Query 022279
Match_columns 300
No_of_seqs 77 out of 79
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 09:24:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022279.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022279hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01658 EYA-cons_domain eyes 100.0 1E-134 3E-139 931.2 24.4 274 5-282 1-274 (274)
2 KOG3107 Predicted haloacid deh 100.0 1E-115 3E-120 841.4 20.0 260 1-282 192-468 (468)
3 PRK13288 pyrophosphatase PpaX; 98.2 1.6E-05 3.5E-10 69.2 11.0 84 183-268 98-185 (214)
4 TIGR03351 PhnX-like phosphonat 98.0 0.00013 2.8E-09 63.4 12.6 83 183-267 103-193 (220)
5 TIGR01428 HAD_type_II 2-haloal 97.9 0.00087 1.9E-08 57.5 15.2 82 183-266 108-193 (198)
6 TIGR02254 YjjG/YfnB HAD superf 97.9 0.00027 5.9E-09 60.9 12.0 81 184-266 113-199 (224)
7 PRK09449 dUMP phosphatase; Pro 97.8 0.0014 3.1E-08 57.1 16.1 83 183-267 110-198 (224)
8 PLN02770 haloacid dehalogenase 97.8 0.00045 9.7E-09 62.5 12.5 82 183-266 124-209 (248)
9 TIGR02009 PGMB-YQAB-SF beta-ph 97.7 0.00066 1.4E-08 56.9 12.3 76 183-262 104-183 (185)
10 PRK13222 phosphoglycolate phos 97.7 0.00037 8.1E-09 60.3 10.6 82 183-266 109-194 (226)
11 PLN03243 haloacid dehalogenase 97.7 0.0011 2.4E-08 61.3 13.7 81 183-265 125-209 (260)
12 PLN02575 haloacid dehalogenase 97.7 0.001 2.2E-08 65.8 14.2 83 183-267 232-318 (381)
13 PHA02597 30.2 hypothetical pro 97.7 0.00092 2E-08 57.5 12.0 82 186-269 92-178 (197)
14 TIGR01449 PGP_bact 2-phosphogl 97.6 0.00075 1.6E-08 58.0 10.6 82 183-267 101-187 (213)
15 TIGR01422 phosphonatase phosph 97.5 0.0044 9.5E-08 55.6 14.8 84 184-268 116-204 (253)
16 PRK10748 flavin mononucleotide 97.5 0.0037 8.1E-08 56.1 13.9 96 184-286 129-235 (238)
17 PF13419 HAD_2: Haloacid dehal 97.5 0.00097 2.1E-08 53.7 9.1 80 183-264 93-176 (176)
18 TIGR02253 CTE7 HAD superfamily 97.4 0.001 2.2E-08 57.6 9.5 85 183-269 110-199 (221)
19 PRK10725 fructose-1-P/6-phosph 97.4 0.0014 3E-08 55.5 10.0 78 186-265 105-186 (188)
20 PLN02940 riboflavin kinase 97.3 0.0025 5.4E-08 62.2 11.6 84 183-268 109-197 (382)
21 TIGR01454 AHBA_synth_RP 3-amin 97.3 0.0012 2.6E-08 57.1 8.2 84 183-268 91-178 (205)
22 TIGR01509 HAD-SF-IA-v3 haloaci 97.3 0.0019 4.1E-08 53.6 8.9 77 183-263 101-182 (183)
23 PRK13226 phosphoglycolate phos 97.3 0.0069 1.5E-07 54.0 12.9 83 183-267 111-197 (229)
24 TIGR01549 HAD-SF-IA-v1 haloaci 97.2 0.0083 1.8E-07 49.3 12.1 70 183-258 80-154 (154)
25 PRK11587 putative phosphatase; 97.1 0.0057 1.2E-07 53.8 10.8 83 183-268 99-185 (218)
26 PRK06698 bifunctional 5'-methy 97.1 0.0055 1.2E-07 60.5 11.9 82 183-268 346-430 (459)
27 PRK10826 2-deoxyglucose-6-phos 97.1 0.0061 1.3E-07 53.5 10.9 83 183-267 108-194 (222)
28 PRK09456 ?-D-glucose-1-phospha 97.1 0.0022 4.9E-08 55.6 7.8 88 183-273 100-193 (199)
29 TIGR01993 Pyr-5-nucltdase pyri 97.0 0.0025 5.5E-08 54.2 6.8 76 186-263 100-183 (184)
30 PRK14988 GMP/IMP nucleotidase; 96.8 0.0063 1.4E-07 54.5 8.6 84 183-268 109-197 (224)
31 TIGR01990 bPGM beta-phosphoglu 96.7 0.0065 1.4E-07 51.0 7.5 78 183-264 103-184 (185)
32 TIGR02247 HAD-1A3-hyp Epoxide 96.4 0.005 1.1E-07 53.4 4.9 88 183-272 110-203 (211)
33 cd01427 HAD_like Haloacid deha 96.4 0.016 3.5E-07 44.2 7.1 43 221-263 96-138 (139)
34 PRK10563 6-phosphogluconate ph 96.3 0.011 2.5E-07 51.5 6.3 82 185-267 103-188 (221)
35 PLN02779 haloacid dehalogenase 96.2 0.073 1.6E-06 49.8 11.6 85 183-268 160-249 (286)
36 PRK13478 phosphonoacetaldehyde 96.1 0.068 1.5E-06 48.6 10.6 85 183-268 117-206 (267)
37 TIGR02252 DREG-2 REG-2-like, H 96.0 0.036 7.8E-07 47.7 8.0 77 183-262 121-202 (203)
38 PRK13225 phosphoglycolate phos 95.9 0.053 1.1E-06 50.7 9.4 83 183-267 158-241 (273)
39 COG0546 Gph Predicted phosphat 95.8 0.22 4.8E-06 44.3 12.3 84 183-268 105-192 (220)
40 PF12710 HAD: haloacid dehalog 95.7 0.12 2.7E-06 43.2 10.1 34 222-255 157-192 (192)
41 PLN02919 haloacid dehalogenase 95.7 0.12 2.6E-06 57.1 12.5 98 148-267 162-264 (1057)
42 PLN02954 phosphoserine phospha 95.6 0.38 8.1E-06 42.0 12.8 40 221-262 154-193 (224)
43 COG1011 Predicted hydrolase (H 95.4 0.059 1.3E-06 46.6 7.3 83 184-268 115-202 (229)
44 PLN02811 hydrolase 95.3 0.092 2E-06 46.3 8.3 84 183-268 94-187 (220)
45 TIGR01691 enolase-ppase 2,3-di 94.6 0.25 5.5E-06 45.1 9.3 80 183-266 111-197 (220)
46 TIGR00338 serB phosphoserine p 94.6 0.2 4.3E-06 43.6 8.3 79 183-262 101-192 (219)
47 TIGR01662 HAD-SF-IIIA HAD-supe 94.5 0.29 6.2E-06 39.5 8.4 79 183-265 41-131 (132)
48 PRK13223 phosphoglycolate phos 94.0 0.4 8.7E-06 44.4 9.3 82 183-267 117-203 (272)
49 TIGR01491 HAD-SF-IB-PSPlk HAD- 93.9 0.32 6.9E-06 41.2 7.8 42 222-263 147-188 (201)
50 TIGR01685 MDP-1 magnesium-depe 93.4 0.38 8.3E-06 42.8 7.8 83 183-269 61-161 (174)
51 TIGR01668 YqeG_hyp_ppase HAD s 93.3 0.98 2.1E-05 39.0 9.9 83 183-271 59-142 (170)
52 TIGR00213 GmhB_yaeD D,D-heptos 93.2 0.88 1.9E-05 39.1 9.6 45 223-267 108-153 (176)
53 PRK06769 hypothetical protein; 93.1 0.73 1.6E-05 39.9 8.9 46 223-268 95-140 (173)
54 TIGR01489 DKMTPPase-SF 2,3-dik 93.0 0.41 9E-06 39.9 7.1 40 221-263 148-187 (188)
55 PRK08942 D,D-heptose 1,7-bisph 92.4 1.2 2.7E-05 38.1 9.4 46 223-268 105-150 (181)
56 TIGR01261 hisB_Nterm histidino 92.3 0.88 1.9E-05 39.5 8.4 46 222-267 104-149 (161)
57 TIGR01548 HAD-SF-IA-hyp1 haloa 91.5 1.2 2.5E-05 38.6 8.2 72 183-256 122-196 (197)
58 PF13242 Hydrolase_like: HAD-h 91.4 0.4 8.7E-06 35.9 4.6 48 224-271 7-55 (75)
59 TIGR01656 Histidinol-ppas hist 90.6 2.5 5.3E-05 35.3 9.1 45 221-265 101-145 (147)
60 TIGR01664 DNA-3'-Pase DNA 3'-p 90.1 1.7 3.7E-05 37.7 8.0 77 183-261 58-158 (166)
61 KOG3107 Predicted haloacid deh 89.3 0.8 1.7E-05 46.5 6.0 134 69-257 253-389 (468)
62 COG0637 Predicted phosphatase/ 88.7 14 0.00029 33.4 12.9 80 187-267 105-188 (221)
63 TIGR01672 AphA HAD superfamily 88.5 6.5 0.00014 36.6 11.1 119 122-271 93-217 (237)
64 TIGR01681 HAD-SF-IIIC HAD-supe 87.8 3.6 7.9E-05 33.9 8.0 48 206-255 76-126 (128)
65 TIGR01458 HAD-SF-IIA-hyp3 HAD- 87.6 0.33 7.2E-06 44.6 2.0 81 187-267 140-226 (257)
66 PRK09484 3-deoxy-D-manno-octul 87.6 2 4.2E-05 37.6 6.6 71 185-262 66-136 (183)
67 TIGR01460 HAD-SF-IIA Haloacid 86.5 0.49 1.1E-05 42.8 2.4 82 185-266 146-235 (236)
68 PRK05446 imidazole glycerol-ph 85.9 4.3 9.4E-05 40.1 8.7 45 222-266 105-149 (354)
69 TIGR01493 HAD-SF-IA-v2 Haloaci 85.6 0.85 1.8E-05 38.2 3.2 67 188-256 104-174 (175)
70 TIGR01490 HAD-SF-IB-hyp1 HAD-s 83.5 19 0.00042 30.7 10.7 43 222-264 155-197 (202)
71 TIGR01670 YrbI-phosphatas 3-de 82.6 4.6 0.0001 34.3 6.5 72 183-261 44-115 (154)
72 TIGR01452 PGP_euk phosphoglyco 82.4 1.6 3.6E-05 40.3 4.0 81 187-267 162-249 (279)
73 PRK13582 thrH phosphoserine ph 79.0 3.2 6.9E-05 35.6 4.4 37 222-262 132-168 (205)
74 TIGR01457 HAD-SF-IIA-hyp2 HAD- 76.8 5.8 0.00012 36.3 5.6 48 221-268 176-226 (249)
75 TIGR02726 phenyl_P_delta pheny 76.1 5.4 0.00012 35.2 5.0 77 187-270 54-130 (169)
76 TIGR01459 HAD-SF-IIA-hyp4 HAD- 75.5 4.6 0.0001 36.4 4.6 78 187-265 157-241 (242)
77 PRK11009 aphA acid phosphatase 75.3 32 0.00069 32.1 10.1 80 184-270 131-216 (237)
78 TIGR01484 HAD-SF-IIB HAD-super 73.9 5.2 0.00011 34.5 4.3 43 219-261 160-202 (204)
79 PRK11133 serB phosphoserine ph 72.1 22 0.00048 34.4 8.6 49 221-270 247-295 (322)
80 PF09949 DUF2183: Uncharacteri 70.3 7.9 0.00017 31.8 4.4 56 193-250 11-76 (100)
81 PRK09552 mtnX 2-hydroxy-3-keto 67.9 27 0.00057 30.9 7.5 38 226-263 148-185 (219)
82 PF13344 Hydrolase_6: Haloacid 66.7 21 0.00045 28.6 6.0 68 183-258 30-99 (101)
83 PHA02530 pseT polynucleotide k 65.1 32 0.00068 31.6 7.7 40 226-265 256-296 (300)
84 PLN02645 phosphoglycolate phos 64.9 13 0.00029 35.1 5.3 48 221-268 228-278 (311)
85 TIGR03333 salvage_mtnX 2-hydro 64.7 31 0.00067 30.4 7.3 36 228-263 146-181 (214)
86 smart00577 CPDc catalytic doma 64.3 5.9 0.00013 33.3 2.6 73 187-261 64-138 (148)
87 TIGR02250 FCP1_euk FCP1-like p 62.0 3.9 8.6E-05 35.4 1.1 17 5-21 5-21 (156)
88 TIGR01487 SPP-like sucrose-pho 60.9 13 0.00029 32.4 4.3 51 218-268 143-193 (215)
89 TIGR01285 nifN nitrogenase mol 60.8 1.5E+02 0.0033 29.8 12.1 75 187-267 315-400 (432)
90 PF00702 Hydrolase: haloacid d 60.3 55 0.0012 27.6 7.8 86 147-257 127-214 (215)
91 cd03073 PDI_b'_ERp72_ERp57 PDI 59.1 20 0.00043 29.4 4.8 48 225-275 38-92 (111)
92 TIGR01488 HAD-SF-IB Haloacid D 58.2 56 0.0012 27.0 7.4 37 220-256 140-176 (177)
93 cd00027 BRCT Breast Cancer Sup 58.0 20 0.00042 24.2 3.9 41 224-264 15-64 (72)
94 PF00533 BRCT: BRCA1 C Terminu 57.3 20 0.00043 25.7 4.0 37 228-264 25-71 (78)
95 TIGR01686 FkbH FkbH-like domai 56.3 70 0.0015 30.4 8.6 70 183-257 47-122 (320)
96 TIGR01681 HAD-SF-IIIC HAD-supe 55.0 5.5 0.00012 32.8 0.8 12 7-18 1-12 (128)
97 PRK10444 UMP phosphatase; Prov 55.0 26 0.00056 32.4 5.3 47 223-269 176-223 (248)
98 PF14824 Sirohm_synth_M: Siroh 55.0 13 0.00028 25.0 2.4 22 182-203 2-23 (30)
99 PRK13707 conjugal transfer pil 54.0 9.4 0.0002 31.6 2.0 28 4-31 17-44 (101)
100 TIGR01491 HAD-SF-IB-PSPlk HAD- 52.4 7.3 0.00016 32.9 1.2 18 6-23 4-21 (201)
101 TIGR02137 HSK-PSP phosphoserin 52.1 7.7 0.00017 34.8 1.3 54 219-277 129-182 (203)
102 PRK14476 nitrogenase molybdenu 52.1 2.7E+02 0.0059 28.2 12.6 72 187-268 315-399 (455)
103 smart00292 BRCT breast cancer 51.9 18 0.00038 25.1 2.9 28 238-265 41-71 (80)
104 PF02350 Epimerase_2: UDP-N-ac 51.8 56 0.0012 31.7 7.3 82 183-267 9-100 (346)
105 PRK01158 phosphoglycolate phos 49.5 23 0.0005 30.9 3.9 49 220-268 155-203 (230)
106 PF12689 Acid_PPase: Acid Phos 48.9 65 0.0014 28.8 6.6 92 183-286 60-163 (169)
107 TIGR02137 HSK-PSP phosphoserin 48.2 72 0.0016 28.6 6.9 24 7-33 2-25 (203)
108 TIGR01482 SPP-subfamily Sucros 46.8 29 0.00064 30.0 4.1 49 220-268 147-195 (225)
109 PF05152 DUF705: Protein of un 46.2 10 0.00022 37.2 1.2 15 4-18 120-134 (297)
110 PLN02846 digalactosyldiacylgly 44.9 36 0.00077 34.9 4.9 34 225-260 248-284 (462)
111 COG4850 Uncharacterized conser 44.5 38 0.00083 34.1 4.9 75 184-260 215-302 (373)
112 TIGR02253 CTE7 HAD superfamily 43.9 12 0.00026 32.4 1.2 20 7-26 3-22 (221)
113 TIGR01686 FkbH FkbH-like domai 43.2 13 0.00027 35.4 1.3 14 5-18 2-15 (320)
114 PRK07478 short chain dehydroge 42.9 2.1E+02 0.0046 25.0 9.0 41 210-250 151-191 (254)
115 PF07178 TraL: TraL protein; 42.0 17 0.00037 29.2 1.7 28 4-31 11-38 (95)
116 PRK14988 GMP/IMP nucleotidase; 41.8 12 0.00025 33.6 0.8 14 6-19 10-23 (224)
117 PF03031 NIF: NLI interacting 41.0 11 0.00023 31.5 0.5 16 8-23 2-17 (159)
118 TIGR03492 conserved hypothetic 40.9 1.2E+02 0.0027 29.8 7.8 113 123-263 58-184 (396)
119 KOG1111 N-acetylglucosaminyltr 39.9 38 0.00082 34.7 4.1 41 226-268 216-261 (426)
120 KOG1099 SAM-dependent methyltr 39.6 31 0.00068 33.5 3.4 43 205-248 81-124 (294)
121 PF08411 Exonuc_X-T_C: Exonucl 39.6 57 0.0012 31.0 5.1 45 102-152 191-236 (269)
122 cd01973 Nitrogenase_VFe_beta_l 39.5 81 0.0018 32.0 6.5 24 243-267 385-408 (454)
123 PRK10563 6-phosphogluconate ph 38.5 15 0.00033 32.0 1.0 25 7-31 5-29 (221)
124 TIGR00685 T6PP trehalose-phosp 38.5 58 0.0013 29.5 4.8 46 220-265 165-217 (244)
125 COG5439 Uncharacterized conser 38.4 26 0.00056 29.7 2.3 40 230-281 72-111 (112)
126 TIGR00655 PurU formyltetrahydr 37.4 57 0.0012 31.2 4.8 46 222-267 93-141 (280)
127 PF13692 Glyco_trans_1_4: Glyc 37.0 36 0.00079 26.6 2.9 23 226-250 24-46 (135)
128 cd01966 Nitrogenase_NifN_1 Nit 36.8 4.5E+02 0.0097 26.3 12.2 72 187-268 304-388 (417)
129 cd02966 TlpA_like_family TlpA- 36.7 71 0.0015 23.3 4.3 56 225-281 39-100 (116)
130 TIGR01993 Pyr-5-nucltdase pyri 36.3 17 0.00036 30.9 0.9 18 8-25 2-19 (184)
131 COG4229 Predicted enolase-phos 35.4 56 0.0012 30.8 4.2 79 184-264 119-203 (229)
132 cd05015 SIS_PGI_1 Phosphogluco 35.3 48 0.001 28.5 3.6 50 227-278 97-148 (158)
133 cd02012 TPP_TK Thiamine pyroph 35.3 1.2E+02 0.0025 27.9 6.4 73 186-260 51-157 (255)
134 PRK09533 bifunctional transald 35.2 56 0.0012 36.7 4.9 54 224-278 524-583 (948)
135 TIGR01278 DPOR_BchB light-inde 35.0 1.1E+02 0.0024 31.3 6.8 89 187-278 299-401 (511)
136 TIGR02471 sucr_syn_bact_C sucr 34.8 49 0.0011 29.4 3.7 49 220-268 157-205 (236)
137 TIGR01459 HAD-SF-IIA-hyp4 HAD- 34.7 77 0.0017 28.5 5.0 23 212-235 70-92 (242)
138 smart00775 LNS2 LNS2 domain. T 34.5 57 0.0012 28.2 3.9 68 186-265 78-146 (157)
139 PRK13010 purU formyltetrahydro 34.4 46 0.00099 32.0 3.6 46 223-268 103-151 (289)
140 TIGR03087 stp1 sugar transfera 33.9 52 0.0011 31.2 3.9 25 225-251 248-272 (397)
141 TIGR00250 RNAse_H_YqgF RNAse H 32.9 75 0.0016 26.9 4.3 55 210-267 23-92 (130)
142 PF06506 PrpR_N: Propionate ca 32.8 31 0.00066 30.1 2.0 26 242-268 128-153 (176)
143 PRK14477 bifunctional nitrogen 31.7 7.7E+02 0.017 27.6 13.9 74 187-268 791-876 (917)
144 PRK11590 hypothetical protein; 31.2 29 0.00062 30.7 1.6 14 5-18 5-18 (211)
145 PF08812 YtxC: YtxC-like famil 30.8 3.5E+02 0.0076 25.0 8.7 123 44-192 14-146 (221)
146 cd02970 PRX_like2 Peroxiredoxi 30.6 73 0.0016 25.4 3.8 42 227-269 46-89 (149)
147 PRK10530 pyridoxal phosphate ( 30.5 71 0.0015 28.5 4.0 42 220-261 197-238 (272)
148 PTZ00225 60S ribosomal protein 30.5 56 0.0012 30.2 3.4 28 237-265 58-85 (214)
149 PRK07774 short chain dehydroge 30.4 1.9E+02 0.0042 25.0 6.6 36 213-248 152-187 (250)
150 TIGR02762 TraL_TIGR type IV co 30.2 43 0.00094 27.1 2.3 28 4-31 11-38 (95)
151 PRK00192 mannosyl-3-phosphogly 29.7 1.5E+02 0.0032 27.1 6.1 56 222-277 190-246 (273)
152 PRK05749 3-deoxy-D-manno-octul 29.4 95 0.0021 29.9 4.9 38 225-264 251-292 (425)
153 PRK13478 phosphonoacetaldehyde 29.1 25 0.00055 32.0 0.9 17 7-23 5-21 (267)
154 PRK10307 putative glycosyl tra 28.6 70 0.0015 30.4 3.8 24 237-260 258-284 (412)
155 TIGR01485 SPP_plant-cyano sucr 28.1 69 0.0015 28.8 3.5 52 219-270 164-216 (249)
156 cd03812 GT1_CapH_like This fam 28.0 86 0.0019 28.2 4.1 35 224-260 211-248 (358)
157 PRK08238 hypothetical protein; 27.9 4.6E+02 0.0099 27.1 9.7 32 228-261 131-162 (479)
158 TIGR00099 Cof-subfamily Cof su 27.5 89 0.0019 28.0 4.1 50 219-268 185-234 (256)
159 cd03018 PRX_AhpE_like Peroxire 27.4 95 0.0021 25.1 3.9 24 227-250 51-74 (149)
160 PF08282 Hydrolase_3: haloacid 27.3 1E+02 0.0022 26.2 4.3 51 218-268 182-232 (254)
161 cd04951 GT1_WbdM_like This fam 27.3 82 0.0018 28.1 3.8 35 224-260 207-244 (360)
162 TIGR01533 lipo_e_P4 5'-nucleot 26.8 2.6E+02 0.0055 26.7 7.2 78 148-250 119-200 (266)
163 TIGR00236 wecB UDP-N-acetylglu 26.5 3.2E+02 0.0068 25.7 7.8 79 184-266 30-118 (365)
164 TIGR02252 DREG-2 REG-2-like, H 26.2 29 0.00063 29.7 0.7 25 7-31 1-25 (203)
165 PRK13011 formyltetrahydrofolat 26.1 1.3E+02 0.0028 28.9 5.1 45 224-268 100-147 (286)
166 PTZ00175 diphthine synthase; P 26.0 1.5E+02 0.0033 28.2 5.5 66 223-290 63-137 (270)
167 PRK13225 phosphoglycolate phos 25.0 31 0.00068 32.3 0.8 19 7-25 63-81 (273)
168 PF13549 ATP-grasp_5: ATP-gras 24.7 83 0.0018 29.1 3.4 46 228-273 16-61 (222)
169 PRK15376 pathogenicity island 24.6 71 0.0015 33.9 3.2 55 84-141 499-560 (670)
170 TIGR01286 nifK nitrogenase mol 24.2 8.3E+02 0.018 25.5 13.1 74 187-266 367-463 (515)
171 TIGR01169 rplA_bact ribosomal 24.2 87 0.0019 29.2 3.5 26 236-262 68-93 (227)
172 PRK09288 purT phosphoribosylgl 24.0 1.6E+02 0.0034 28.2 5.3 42 221-262 112-153 (395)
173 PRK08642 fabG 3-ketoacyl-(acyl 24.0 3.6E+02 0.0077 23.3 7.1 36 213-248 156-191 (253)
174 PRK09437 bcp thioredoxin-depen 23.8 1.4E+02 0.0031 24.5 4.4 38 227-264 53-92 (154)
175 PRK06027 purU formyltetrahydro 23.6 80 0.0017 30.2 3.2 45 224-268 100-147 (286)
176 TIGR01283 nifE nitrogenase mol 23.6 7.6E+02 0.016 24.8 12.3 72 187-265 330-420 (456)
177 TIGR02834 spo_ytxC putative sp 23.3 4.8E+02 0.011 25.2 8.4 121 47-193 75-204 (276)
178 cd02007 TPP_DXS Thiamine pyrop 23.1 1.5E+02 0.0032 26.5 4.6 34 237-270 97-137 (195)
179 cd00568 TPP_enzymes Thiamine p 23.0 1.2E+02 0.0026 25.0 3.8 83 186-270 15-102 (168)
180 PLN02501 digalactosyldiacylgly 23.0 78 0.0017 35.0 3.3 32 226-259 567-601 (794)
181 cd03072 PDI_b'_ERp44 PDIb' fam 22.9 1.6E+02 0.0035 23.9 4.5 59 225-286 34-104 (111)
182 PRK05424 rplA 50S ribosomal pr 22.8 92 0.002 29.1 3.4 26 236-262 69-94 (230)
183 TIGR00756 PPR pentatricopeptid 22.8 92 0.002 18.4 2.4 27 19-50 2-28 (35)
184 TIGR03568 NeuC_NnaA UDP-N-acet 22.4 4.7E+02 0.01 25.4 8.3 83 184-268 30-127 (365)
185 TIGR00639 PurN phosphoribosylg 22.4 1.6E+02 0.0035 26.4 4.8 45 222-266 9-58 (190)
186 cd01977 Nitrogenase_VFe_alpha 22.3 2.9E+02 0.0062 27.4 6.9 71 188-264 293-382 (415)
187 PF09419 PGP_phosphatase: Mito 22.2 56 0.0012 29.3 1.8 38 221-258 114-157 (168)
188 TIGR01170 rplA_mito ribosomal 22.0 1.2E+02 0.0025 26.5 3.6 27 236-262 50-76 (141)
189 TIGR01456 CECR5 HAD-superfamil 22.0 3.5E+02 0.0076 25.8 7.2 63 187-258 40-104 (321)
190 KOG1089 Myotubularin-related p 21.7 1.7E+02 0.0038 31.3 5.5 53 132-203 311-369 (573)
191 PRK05800 cobU adenosylcobinami 21.7 1.2E+02 0.0027 26.5 3.8 40 215-255 6-45 (170)
192 COG5275 BRCT domain type II [G 21.6 1.2E+02 0.0027 29.2 3.9 25 238-262 194-220 (276)
193 CHL00073 chlN photochlorophyll 21.2 1.7E+02 0.0038 30.2 5.3 41 225-266 87-136 (457)
194 TIGR01650 PD_CobS cobaltochela 21.1 77 0.0017 31.3 2.6 25 253-277 84-109 (327)
195 TIGR01486 HAD-SF-IIB-MPGP mann 20.9 1.6E+02 0.0034 26.6 4.4 49 220-268 174-224 (256)
196 TIGR02463 MPGP_rel mannosyl-3- 20.7 2.1E+02 0.0046 24.9 5.1 42 220-261 177-218 (221)
197 PF01076 Mob_Pre: Plasmid reco 20.7 89 0.0019 28.0 2.8 27 223-251 104-130 (196)
198 cd04175 Rap1 Rap1 subgroup. T 20.7 2.2E+02 0.0048 23.0 4.9 83 184-269 50-148 (164)
199 PRK06195 DNA polymerase III su 20.6 1.4E+02 0.0031 28.4 4.3 35 228-262 241-297 (309)
200 cd01965 Nitrogenase_MoFe_beta_ 20.5 90 0.0019 30.9 3.0 76 187-267 303-398 (428)
201 PRK10187 trehalose-6-phosphate 20.5 2.5E+02 0.0053 26.1 5.7 59 219-277 171-233 (266)
202 PF04068 RLI: Possible Fer4-li 20.4 62 0.0013 22.1 1.3 9 7-15 2-10 (35)
203 PLN02779 haloacid dehalogenase 20.4 49 0.0011 31.0 1.1 27 6-32 40-67 (286)
204 PRK13223 phosphoglycolate phos 20.3 54 0.0012 30.4 1.3 26 5-30 12-37 (272)
205 PRK06063 DNA polymerase III su 20.3 84 0.0018 30.4 2.6 36 227-262 251-296 (313)
206 cd03012 TlpA_like_DipZ_like Tl 20.3 1.6E+02 0.0035 23.5 3.9 37 226-262 44-88 (126)
207 cd03008 TryX_like_RdCVF Trypar 20.3 1.1E+02 0.0023 26.7 3.0 55 227-281 51-115 (146)
No 1
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=100.00 E-value=1.3e-134 Score=931.24 Aligned_cols=274 Identities=62% Similarity=1.084 Sum_probs=266.7
Q ss_pred cceEEEeeCchhhhhHhhhhhhhhhhhcCCCCChhhhhHHHHHHHHHHHHhhhhhhchhhhhhcCccccccccccCCCCC
Q 022279 5 LTKVFIWDMDETLILLKSLLNGTFAQSFNDLKDADKGVQIGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYDDGRD 84 (300)
Q Consensus 5 l~rVFIWDLDETlIif~SLLtg~yA~~~~g~KD~~~~v~LG~~mE~~If~l~D~hfFfndlee~d~~~iddv~~dDnG~D 84 (300)
++||||||||||||||||||||+||++|+|+||++++++||+|||+|||++||+||||||+|||||||||||++||||||
T Consensus 1 ~e~VfvWDlDETlIif~SLL~GsyA~~f~g~KD~~~~v~lG~r~E~lIl~l~D~~fFf~~lEe~dq~~lddv~~~DdG~D 80 (274)
T TIGR01658 1 PENVYVWDMDETLILLHSLLNGSYAESFNGSKDHKRGVEIGRRWEEMILEICDTHFFYEEIEECNEPFLDDVRSYDDGKD 80 (274)
T ss_pred CceeEEEeccchHHHHHHhhcchHHHHcCCCcCcHHHHHHHHHHHHHHHHHHHhhhhhhhHHhcCccchhhhhhcccccC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCCCCCCCCCchhhhHHHHHHHHHHHHHhcCcccccChHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhcCCc
Q 022279 85 LSDYEFDRDGLCPPFDDLSLKKIAYRHRAIAHKYKEGLQNIFDKEMLRVWDELYDMTDEYTDRWLSSARVLLEQCSSGKE 164 (300)
Q Consensus 85 Ls~y~F~~dgf~~p~~~~nmRKLA~ryR~I~e~Y~~~l~~ll~~~~~~~w~~L~~~~d~~Td~WLs~A~k~L~~i~~~~~ 164 (300)
||+|||.+|||++|.++.|+||||||||+|+|+|+++|++||+|++++.|++||++||.+||+|||+|+|||++|+++.+
T Consensus 81 Ls~Y~F~~D~f~~p~~~~~~rKLAyR~R~I~e~Y~~~v~~lL~~~~~~~w~~L~~e~d~~TD~WLs~A~k~l~~~~~~~~ 160 (274)
T TIGR01658 81 LSRYEFKTDGFSTPTDDLNKRKLAYRHRAVAEIYEKGLGPLLDPESMEALDELYSETDVYTDRWLSSALKFLEQCSCVEE 160 (274)
T ss_pred ccccccccccCCCCccchhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred ccccccccccccccccCCceeEEEEcCCcchHHHHHHHHhhcCcccccCccccccccChhhHHHHHHHHhCCCCcEEEEe
Q 022279 165 VSTSSLGLASLDSADTKSEHVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVGKLQCFQWIKERFNNPNVQFCVI 244 (300)
Q Consensus 165 ~~~~~~~~~~~~~~~sr~~~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvGKesCFerI~~RFgg~k~~fvvI 244 (300)
++ .+++++.+++|++||||||||||||||||||||||||++|||||||||+|||||||||||++|||+|||+||||
T Consensus 161 ~~----~~~~~~~i~sr~~~vNvLVTs~qLVPaLaKcLLy~L~~~f~ieNIYSa~kvGK~~cFe~I~~Rfg~p~~~f~~I 236 (274)
T TIGR01658 161 SS----DGTSLIEISSRDNCINVLVTSGQLIPSLAKCLLFRLDTIFRIENVYSSIKVGKLQCFKWIKERFGHPKVRFCAI 236 (274)
T ss_pred cc----cccchhccccCCceeEEEEEcCccHHHHHHHHHhccCCccccccccchhhcchHHHHHHHHHHhCCCCceEEEe
Confidence 43 34677888999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred cCChhHHHHHHHcCCceEEeecCCCCCCCCCCCccccc
Q 022279 245 GDGWEEGEAAQAMQWPFVKIDLGPGSCHRFPGLSLRTL 282 (300)
Q Consensus 245 GDG~eEe~aAk~~~~PFwrI~s~~d~~~~~p~l~~~~~ 282 (300)
|||+|||+|||+||||||||++|||++||||||+|+||
T Consensus 237 GDG~eEe~aAk~l~wPFw~I~~h~Dl~~l~~aL~l~~l 274 (274)
T TIGR01658 237 GDGWEECTAAQAMNWPFVKIDLHPDSSHRFPGLTLKTL 274 (274)
T ss_pred CCChhHHHHHHhcCCCeEEeecCCCHHHhCccCCcCCC
Confidence 99999999999999999999999999999999999986
No 2
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=100.00 E-value=1.3e-115 Score=841.43 Aligned_cols=260 Identities=37% Similarity=0.623 Sum_probs=251.9
Q ss_pred CCCccceEEEeeCchhhhhHhhhhhhhhhhhcCCCCChhhhhHHHHHHHHHHHHhhhhhhchhhhhhcCccccccccccC
Q 022279 1 MDATLTKVFIWDMDETLILLKSLLNGTFAQSFNDLKDADKGVQIGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYD 80 (300)
Q Consensus 1 ~d~~l~rVFIWDLDETlIif~SLLtg~yA~~~~g~KD~~~~v~LG~~mE~~If~l~D~hfFfndlee~d~~~iddv~~dD 80 (300)
.|++||||||||||||||||||||+|+||++|+ ||+..+++||+|||+||||+||+||||||||||||+|||||++||
T Consensus 192 ~ds~~eRVFiWDlDEtiIifhslL~gsya~~y~--kd~~~~v~ig~~mE~mifn~aDth~F~ndleecdq~~vDdvs~dD 269 (468)
T KOG3107|consen 192 GDSTLERVFIWDLDETIIIFHSLLTGSYATRYG--KDPRAAVSIGLMMEEMIFNLADTHLFFNDLEECDQVHVDDVSSDD 269 (468)
T ss_pred CCCcceeEEEeeccchHHHHHHHhhhhhhhhcc--CCchhhhHHHHHHHHHHHHhhhHHHHHHHHhhhcccccccccccC
Confidence 489999999999999999999999999999997 999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccCCCCCCCCC--------------CchhhhHHHHHHHHHHHHH---hcCcccccChHHHHHHHHHHhhhhh
Q 022279 81 DGRDLSDYEFDRDGLCPPF--------------DDLSLKKIAYRHRAIAHKY---KEGLQNIFDKEMLRVWDELYDMTDE 143 (300)
Q Consensus 81 nG~DLs~y~F~~dgf~~p~--------------~~~nmRKLA~ryR~I~e~Y---~~~l~~ll~~~~~~~w~~L~~~~d~ 143 (300)
||||||.|+|.+|||+++. +.+||||||||||++||+| +++++++++|.+++.|.+||+++|.
T Consensus 270 ngqdLs~y~f~~d~fsa~~~~~~~l~~~~~v~g~vd~mr~laFr~re~~e~~~~y~nnv~~l~~p~~~eaw~~lr~~~ev 349 (468)
T KOG3107|consen 270 NGQDLSTYNFVTDGFSAFTAFSANLCLKTGVRGGVDWMRKLAFRYREVKEIYNTYKNNVGGLTGPNKREAWLQLRAEIEV 349 (468)
T ss_pred CcccccceeeccCCCcCcCccccccccccccchhhhhhhccchhhHHHHHHHHHHHhhhhcccCchhhHHHHHHHHHHHH
Confidence 9999999999999999853 4588999999999999875 7899999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhhcCCcccccccccccccccccCCceeEEEEcCCcchHHHHHHHHhhcCcccccCccccccccCh
Q 022279 144 YTDRWLSSARVLLEQCSSGKEVSTSSLGLASLDSADTKSEHVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVGK 223 (300)
Q Consensus 144 ~Td~WLs~A~k~L~~i~~~~~~~~~~~~~~~~~~~~sr~~~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvGK 223 (300)
.||.||++|+++|.+++ +|.||||||||||||||+||||||||||++||||||||++||||
T Consensus 350 ~tdsw~tsaLka~s~i~-------------------sr~ncvnVlvTttqLipalaKvLL~gLg~~fpiENIYSa~kiGK 410 (468)
T KOG3107|consen 350 LTDSWLTSALKALSLIS-------------------SRKNCVNVLVTTTQLIPALAKVLLYGLGSSFPIENIYSATKIGK 410 (468)
T ss_pred hhhhhhhhHHHHHhhhh-------------------cccceeEEEEeccchhHHHHHHHHHhcCCcccchhhhhhhhccH
Confidence 99999999999999998 56799999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCceEEeecCCCCCCCCCCCccccc
Q 022279 224 LQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFVKIDLGPGSCHRFPGLSLRTL 282 (300)
Q Consensus 224 esCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFwrI~s~~d~~~~~p~l~~~~~ 282 (300)
|||||||++||| |||+|||||||+|||+|||+||||||||++|+|++||||+|++++|
T Consensus 411 escFerI~~RFg-~K~~yvvIgdG~eee~aAK~ln~PfwrI~~h~Dl~~l~~aL~~~~l 468 (468)
T KOG3107|consen 411 ESCFERIQSRFG-RKVVYVVIGDGVEEEQAAKALNMPFWRISSHSDLDALYSALELEYL 468 (468)
T ss_pred HHHHHHHHHHhC-CceEEEEecCcHHHHHHHHhhCCceEeeccCccHHHHhhhcccccC
Confidence 999999999996 8999999999999999999999999999999999999999999875
No 3
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.20 E-value=1.6e-05 Score=69.15 Aligned_cols=84 Identities=13% Similarity=-0.048 Sum_probs=64.3
Q ss_pred ceeEEEEcCCcchHHHHHHHHhhcCcccccCcccccccc----ChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcC
Q 022279 183 EHVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEV----GKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQ 258 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kv----GKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~ 258 (300)
+..-++||++.---.-.++=-+|+..+|. .|+++-.+ .|...|+++.+++|-+.-..++|||...--+||++.|
T Consensus 98 g~~~~i~S~~~~~~~~~~l~~~gl~~~f~--~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~iGDs~~Di~aa~~aG 175 (214)
T PRK13288 98 GYKLGIVTTKMRDTVEMGLKLTGLDEFFD--VVITLDDVEHAKPDPEPVLKALELLGAKPEEALMVGDNHHDILAGKNAG 175 (214)
T ss_pred CCeEEEEeCCCHHHHHHHHHHcCChhcee--EEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCC
Confidence 44567788876433334444578888874 58876554 3578999999999865668899999999999999999
Q ss_pred CceEEeecCC
Q 022279 259 WPFVKIDLGP 268 (300)
Q Consensus 259 ~PFwrI~s~~ 268 (300)
++++-|....
T Consensus 176 ~~~i~v~~g~ 185 (214)
T PRK13288 176 TKTAGVAWTI 185 (214)
T ss_pred CeEEEEcCCC
Confidence 9999887654
No 4
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=98.00 E-value=0.00013 Score=63.45 Aligned_cols=83 Identities=16% Similarity=-0.056 Sum_probs=63.4
Q ss_pred ceeEEEEcCCcchHHHHHHHHhhcC--cccccCcccccccc--C--hhhHHHHHHHHhCCC-CcEEEEecCChhHHHHHH
Q 022279 183 EHVNILVTSGSLIPSLVKCLLFRLD--NLITHGNVYSSWEV--G--KLQCFQWIKERFNNP-NVQFCVIGDGWEEGEAAQ 255 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LLygL~--~~fpieNIYSa~kv--G--KesCFerI~~RFgg~-k~~fvvIGDG~eEe~aAk 255 (300)
+..-.+||++.---.-.++=-++|. .+|+ -||++..+ + +...|++..+|+|-+ .-.-++|||+..--+|||
T Consensus 103 g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~--~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~~igD~~~Di~aa~ 180 (220)
T TIGR03351 103 GIKVALTTGFDRDTAERLLEKLGWTVGDDVD--AVVCPSDVAAGRPAPDLILRAMELTGVQDVQSVAVAGDTPNDLEAGI 180 (220)
T ss_pred CCEEEEEeCCchHHHHHHHHHhhhhhhccCC--EEEcCCcCCCCCCCHHHHHHHHHHcCCCChhHeEEeCCCHHHHHHHH
Confidence 5666888888754444444446776 7786 48887664 3 459999999999854 368999999999999999
Q ss_pred HcCCce-EEeecC
Q 022279 256 AMQWPF-VKIDLG 267 (300)
Q Consensus 256 ~~~~PF-wrI~s~ 267 (300)
+.|||+ +-+...
T Consensus 181 ~aG~~~~i~~~~g 193 (220)
T TIGR03351 181 NAGAGAVVGVLTG 193 (220)
T ss_pred HCCCCeEEEEecC
Confidence 999999 777653
No 5
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=97.86 E-value=0.00087 Score=57.54 Aligned_cols=82 Identities=15% Similarity=0.041 Sum_probs=62.4
Q ss_pred ceeEEEEcCCcchHHHHHHHHhhcCcccccCccccccccC----hhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcC
Q 022279 183 EHVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVG----KLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQ 258 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvG----KesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~ 258 (300)
+..-+++|++.---.-.++=-+||..+| +-|+++-.+| +...|+.+.+++|-+.-.-++|||+..--+||++.|
T Consensus 108 g~~~~i~Sn~~~~~~~~~l~~~gl~~~f--d~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~~vgD~~~Di~~A~~~G 185 (198)
T TIGR01428 108 GYRLAILSNGSPAMLKSLVKHAGLDDPF--DAVLSADAVRAYKPAPQVYQLALEALGVPPDEVLFVASNPWDLGGAKKFG 185 (198)
T ss_pred CCeEEEEeCCCHHHHHHHHHHCCChhhh--heeEehhhcCCCCCCHHHHHHHHHHhCCChhhEEEEeCCHHHHHHHHHCC
Confidence 4566788887643333333345666676 5688888776 367999999999866667889999999999999999
Q ss_pred CceEEeec
Q 022279 259 WPFVKIDL 266 (300)
Q Consensus 259 ~PFwrI~s 266 (300)
|+.+-|.-
T Consensus 186 ~~~i~v~r 193 (198)
T TIGR01428 186 FKTAWVNR 193 (198)
T ss_pred CcEEEecC
Confidence 99988864
No 6
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=97.86 E-value=0.00027 Score=60.85 Aligned_cols=81 Identities=16% Similarity=0.178 Sum_probs=60.9
Q ss_pred eeEEEEcCCcchHHHHHHHHhhcCcccccCccccccccC----hhhHHHHHHHHh-CCCCcEEEEecCCh-hHHHHHHHc
Q 022279 184 HVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVG----KLQCFQWIKERF-NNPNVQFCVIGDGW-EEGEAAQAM 257 (300)
Q Consensus 184 ~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvG----KesCFerI~~RF-gg~k~~fvvIGDG~-eEe~aAk~~ 257 (300)
..-++||++.---.-.++=-++|+.+| +.||++..+| +..+|+...+++ |-+.-.=|+|||.. .--+||++.
T Consensus 113 ~~~~i~Sn~~~~~~~~~l~~~~l~~~f--d~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~igD~~~~di~~A~~~ 190 (224)
T TIGR02254 113 FRLYIVTNGVRETQYKRLRKSGLFPFF--DDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEVLMIGDSLTADIKGGQNA 190 (224)
T ss_pred CcEEEEeCCchHHHHHHHHHCCcHhhc--CEEEEcCccCCCCCCHHHHHHHHHHhcCCCchheEEECCCcHHHHHHHHHC
Confidence 455777777532222333346778887 6899988765 446999999999 75556789999997 488899999
Q ss_pred CCceEEeec
Q 022279 258 QWPFVKIDL 266 (300)
Q Consensus 258 ~~PFwrI~s 266 (300)
||+++-++.
T Consensus 191 G~~~i~~~~ 199 (224)
T TIGR02254 191 GLDTCWMNP 199 (224)
T ss_pred CCcEEEECC
Confidence 999988864
No 7
>PRK09449 dUMP phosphatase; Provisional
Probab=97.83 E-value=0.0014 Score=57.11 Aligned_cols=83 Identities=16% Similarity=0.154 Sum_probs=62.4
Q ss_pred ceeEEEEcCCcchHHHHHHHHhhcCcccccCccccccccC----hhhHHHHHHHHhCCCC-cEEEEecCChh-HHHHHHH
Q 022279 183 EHVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVG----KLQCFQWIKERFNNPN-VQFCVIGDGWE-EGEAAQA 256 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvG----KesCFerI~~RFgg~k-~~fvvIGDG~e-Ee~aAk~ 256 (300)
+..=.+|||+.---...++=-++|..+| +-|+++..+| +...|+.+.+++|... -.-++|||..+ --+||++
T Consensus 110 ~~~~~i~Tn~~~~~~~~~l~~~~l~~~f--d~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~~vgD~~~~Di~~A~~ 187 (224)
T PRK09449 110 KVKMGIITNGFTELQQVRLERTGLRDYF--DLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRVLMVGDNLHSDILGGIN 187 (224)
T ss_pred CCeEEEEeCCcHHHHHHHHHhCChHHHc--CEEEEECccCCCCCCHHHHHHHHHHcCCCCcccEEEEcCCcHHHHHHHHH
Confidence 3455678988755445555567788887 5588887654 4569999999997433 47899999985 7889999
Q ss_pred cCCceEEeecC
Q 022279 257 MQWPFVKIDLG 267 (300)
Q Consensus 257 ~~~PFwrI~s~ 267 (300)
.||+++-+..+
T Consensus 188 aG~~~i~~~~~ 198 (224)
T PRK09449 188 AGIDTCWLNAH 198 (224)
T ss_pred CCCcEEEECCC
Confidence 99999988643
No 8
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=97.78 E-value=0.00045 Score=62.53 Aligned_cols=82 Identities=16% Similarity=0.059 Sum_probs=66.1
Q ss_pred ceeEEEEcCCcchHHHHHHHHhhcCcccccCcccccccc--C--hhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcC
Q 022279 183 EHVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEV--G--KLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQ 258 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kv--G--KesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~ 258 (300)
++--.+||+++-.-.-.++=-++|..+|.. |+++..+ + +..+|+++.+|+|-+.-.-++|||..---+||++.|
T Consensus 124 g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~--iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~l~vgDs~~Di~aA~~aG 201 (248)
T PLN02770 124 GLKRAAVTNAPRENAELMISLLGLSDFFQA--VIIGSECEHAKPHPDPYLKALEVLKVSKDHTFVFEDSVSGIKAGVAAG 201 (248)
T ss_pred CCeEEEEeCCCHHHHHHHHHHcCChhhCcE--EEecCcCCCCCCChHHHHHHHHHhCCChhHEEEEcCCHHHHHHHHHCC
Confidence 456679999886666666666888888854 6777654 3 457999999999866667899999999999999999
Q ss_pred CceEEeec
Q 022279 259 WPFVKIDL 266 (300)
Q Consensus 259 ~PFwrI~s 266 (300)
|+++-+..
T Consensus 202 i~~i~v~~ 209 (248)
T PLN02770 202 MPVVGLTT 209 (248)
T ss_pred CEEEEEeC
Confidence 99998864
No 9
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=97.75 E-value=0.00066 Score=56.94 Aligned_cols=76 Identities=17% Similarity=0.037 Sum_probs=54.9
Q ss_pred ceeEEEEcCCcchHHHHHHHHhhcCcccccCccccccccC----hhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcC
Q 022279 183 EHVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVG----KLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQ 258 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvG----KesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~ 258 (300)
+..-+++|++..+.. ++=.++|..+| +.|+++-.++ +..+|+++.+++|-+.-.-++|||...--+||++.|
T Consensus 104 g~~i~i~S~~~~~~~--~l~~~~l~~~f--~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~IgD~~~di~aA~~~G 179 (185)
T TIGR02009 104 GIAVGLGSSSKNADR--ILAKLGLTDYF--DAIVDADEVKEGKPHPETFLLAAELLGVSPNECVVFEDALAGVQAARAAG 179 (185)
T ss_pred CCeEEEEeCchhHHH--HHHHcChHHHC--CEeeehhhCCCCCCChHHHHHHHHHcCCCHHHeEEEeCcHhhHHHHHHCC
Confidence 444567777622221 22246777776 4677765543 456899999999866667889999999999999999
Q ss_pred CceE
Q 022279 259 WPFV 262 (300)
Q Consensus 259 ~PFw 262 (300)
||++
T Consensus 180 ~~~i 183 (185)
T TIGR02009 180 MFAV 183 (185)
T ss_pred CeEe
Confidence 9986
No 10
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=97.72 E-value=0.00037 Score=60.27 Aligned_cols=82 Identities=13% Similarity=0.043 Sum_probs=59.2
Q ss_pred ceeEEEEcCCcchHHHHHHHHhhcCcccccCccccccccC----hhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcC
Q 022279 183 EHVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVG----KLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQ 258 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvG----KesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~ 258 (300)
++.-+++|++.-.-.-.++=-++|..+|. -++++-.++ |-.+|+.+.+++|-+.-+-++|||+...-+||++.|
T Consensus 109 g~~~~i~S~~~~~~~~~~l~~~~l~~~f~--~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~igD~~~Di~~a~~~g 186 (226)
T PRK13222 109 GYPLAVVTNKPTPFVAPLLEALGIADYFS--VVIGGDSLPNKKPDPAPLLLACEKLGLDPEEMLFVGDSRNDIQAARAAG 186 (226)
T ss_pred CCeEEEEeCCCHHHHHHHHHHcCCccCcc--EEEcCCCCCCCCcChHHHHHHHHHcCCChhheEEECCCHHHHHHHHHCC
Confidence 44456778775332223333457777765 356554432 568999999999876677889999999999999999
Q ss_pred CceEEeec
Q 022279 259 WPFVKIDL 266 (300)
Q Consensus 259 ~PFwrI~s 266 (300)
|+++-|..
T Consensus 187 ~~~i~v~~ 194 (226)
T PRK13222 187 CPSVGVTY 194 (226)
T ss_pred CcEEEECc
Confidence 99998864
No 11
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.68 E-value=0.0011 Score=61.34 Aligned_cols=81 Identities=16% Similarity=0.106 Sum_probs=64.1
Q ss_pred ceeEEEEcCCcchHHHHHHHHhhcCcccccCcccccccc--C--hhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcC
Q 022279 183 EHVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEV--G--KLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQ 258 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kv--G--KesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~ 258 (300)
.+.-.||||++-.-.-.++=-++|..+|.. |+++-.+ + +..+|.++.+|+|-+.-.-++|||...--+||++.|
T Consensus 125 g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~--ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~l~IgDs~~Di~aA~~aG 202 (260)
T PLN03243 125 EIPIAVASTRPRRYLERAIEAVGMEGFFSV--VLAAEDVYRGKPDPEMFMYAAERLGFIPERCIVFGNSNSSVEAAHDGC 202 (260)
T ss_pred CCEEEEEeCcCHHHHHHHHHHcCCHhhCcE--EEecccCCCCCCCHHHHHHHHHHhCCChHHeEEEcCCHHHHHHHHHcC
Confidence 566778898876555555555788888764 6666554 3 457999999999877778899999999999999999
Q ss_pred CceEEee
Q 022279 259 WPFVKID 265 (300)
Q Consensus 259 ~PFwrI~ 265 (300)
|+++-+.
T Consensus 203 ~~~i~v~ 209 (260)
T PLN03243 203 MKCVAVA 209 (260)
T ss_pred CEEEEEe
Confidence 9999886
No 12
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=97.67 E-value=0.001 Score=65.82 Aligned_cols=83 Identities=13% Similarity=0.058 Sum_probs=63.6
Q ss_pred ceeEEEEcCCcchHHHHHHHHhhcCcccccCccccccccC----hhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcC
Q 022279 183 EHVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVG----KLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQ 258 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvG----KesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~ 258 (300)
++--.|||+..-.-.-.++=-+||..+|. -|+++-.++ +...|..+.+++|-+.-.-++|||...--+||+..|
T Consensus 232 GiklaIaSn~~~~~~~~~L~~lgL~~yFd--~Iv~sddv~~~KP~Peifl~A~~~lgl~Peecl~IGDS~~DIeAAk~AG 309 (381)
T PLN02575 232 KIPMALVSTRPRKTLENAIGSIGIRGFFS--VIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCIVFGNSNQTVEAAHDAR 309 (381)
T ss_pred CCeEEEEeCCCHHHHHHHHHHcCCHHHce--EEEecCcCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHcC
Confidence 45567888887333222333367778876 488887653 456999999999866678999999999999999999
Q ss_pred CceEEeecC
Q 022279 259 WPFVKIDLG 267 (300)
Q Consensus 259 ~PFwrI~s~ 267 (300)
|+++-|...
T Consensus 310 m~~IgV~~~ 318 (381)
T PLN02575 310 MKCVAVASK 318 (381)
T ss_pred CEEEEECCC
Confidence 999999764
No 13
>PHA02597 30.2 hypothetical protein; Provisional
Probab=97.65 E-value=0.00092 Score=57.50 Aligned_cols=82 Identities=21% Similarity=0.218 Sum_probs=59.9
Q ss_pred EEEEcCCcchHHHHHHHHhhcCccccc--Cccccc-cccChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHc--CCc
Q 022279 186 NILVTSGSLIPSLVKCLLFRLDNLITH--GNVYSS-WEVGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAM--QWP 260 (300)
Q Consensus 186 NVLVTs~qLVPaLaK~LLygL~~~fpi--eNIYSa-~kvGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~--~~P 260 (300)
-+++||+.--+...+.-.++|..+|+- +-|+++ ...+|...|..+.+++| ++ ..|+|||...--+||++. ||+
T Consensus 92 ~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~~~~kp~~~~~a~~~~~-~~-~~v~vgDs~~di~aA~~a~~Gi~ 169 (197)
T PHA02597 92 FVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGHDESKEKLFIKAKEKYG-DR-VVCFVDDLAHNLDAAHEALSQLP 169 (197)
T ss_pred EEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEeccCcccHHHHHHHHHHhC-CC-cEEEeCCCHHHHHHHHHHHcCCc
Confidence 367788765554434445566666641 344332 23579999999999997 64 578999999999999998 999
Q ss_pred eEEeecCCC
Q 022279 261 FVKIDLGPG 269 (300)
Q Consensus 261 FwrI~s~~d 269 (300)
++-+..+..
T Consensus 170 ~i~~~~~~~ 178 (197)
T PHA02597 170 VIHMLRGER 178 (197)
T ss_pred EEEecchhh
Confidence 999977654
No 14
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.59 E-value=0.00075 Score=57.99 Aligned_cols=82 Identities=21% Similarity=0.158 Sum_probs=59.2
Q ss_pred ceeEEEEcCCcchHHHHHH-HHhhcCcccccCcccccccc--C--hhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHc
Q 022279 183 EHVNILVTSGSLIPSLVKC-LLFRLDNLITHGNVYSSWEV--G--KLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAM 257 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~-LLygL~~~fpieNIYSa~kv--G--KesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~ 257 (300)
+.--+++|++.- ..+-++ =-+++..+|+ -|+++-.+ + +..+|.++.+++|-+.-.-++|||...--+||++.
T Consensus 101 g~~~~i~S~~~~-~~~~~~l~~~~l~~~f~--~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~igDs~~d~~aa~~a 177 (213)
T TIGR01449 101 GLRLGLVTNKPT-PLARPLLELLGLAKYFS--VLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMVYVGDSRVDIQAARAA 177 (213)
T ss_pred CCeEEEEeCCCH-HHHHHHHHHcCcHhhCc--EEEecCCCCCCCCChHHHHHHHHHcCCChhHeEEeCCCHHHHHHHHHC
Confidence 344567777643 222222 2256777775 46776543 2 45799999999986666788999999999999999
Q ss_pred CCceEEeecC
Q 022279 258 QWPFVKIDLG 267 (300)
Q Consensus 258 ~~PFwrI~s~ 267 (300)
|||++-+...
T Consensus 178 G~~~i~v~~g 187 (213)
T TIGR01449 178 GCPSVLLTYG 187 (213)
T ss_pred CCeEEEEccC
Confidence 9999999653
No 15
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.51 E-value=0.0044 Score=55.59 Aligned_cols=84 Identities=11% Similarity=-0.191 Sum_probs=59.7
Q ss_pred eeEEEEcCCcchHHHHHHHHhhcCcccccCccccccccC----hhhHHHHHHHHhCCC-CcEEEEecCChhHHHHHHHcC
Q 022279 184 HVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVG----KLQCFQWIKERFNNP-NVQFCVIGDGWEEGEAAQAMQ 258 (300)
Q Consensus 184 ~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvG----KesCFerI~~RFgg~-k~~fvvIGDG~eEe~aAk~~~ 258 (300)
.--.|||++.--..-.++=-+++..+| .+-|+++-.++ +..+|.++.+|+|-. .-.-++|||..---+||+..|
T Consensus 116 ~~l~IvT~~~~~~~~~~l~~~gl~~~f-~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~l~IGDs~~Di~aA~~aG 194 (253)
T TIGR01422 116 IKIGSTTGYTREMMDVVAPEAALQGYR-PDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAACVKVGDTVPDIEEGRNAG 194 (253)
T ss_pred CeEEEECCCcHHHHHHHHHHHHhcCCC-CceEEccccCCCCCCCHHHHHHHHHHcCCCCchheEEECCcHHHHHHHHHCC
Confidence 344566666533222222236787776 25577766542 568999999999853 457899999999999999999
Q ss_pred CceEEeecCC
Q 022279 259 WPFVKIDLGP 268 (300)
Q Consensus 259 ~PFwrI~s~~ 268 (300)
|+++-+....
T Consensus 195 i~~i~v~~g~ 204 (253)
T TIGR01422 195 MWTVGLILSS 204 (253)
T ss_pred CeEEEEecCC
Confidence 9999997543
No 16
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=97.48 E-value=0.0037 Score=56.14 Aligned_cols=96 Identities=19% Similarity=0.243 Sum_probs=69.3
Q ss_pred eeEEEEcCCcchHHHHHHHHhhcCcccccCccccccccC----hhhHHHHHHHHhCCCCcEEEEecCCh-hHHHHHHHcC
Q 022279 184 HVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVG----KLQCFQWIKERFNNPNVQFCVIGDGW-EEGEAAQAMQ 258 (300)
Q Consensus 184 ~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvG----KesCFerI~~RFgg~k~~fvvIGDG~-eEe~aAk~~~ 258 (300)
+.=++|||+.--. =.+||..+|. .|+++-.+| +...|+.+.+++|-+.-.-++|||.. .--+||++.|
T Consensus 129 ~~l~i~Tn~~~~~-----~~~gl~~~fd--~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG 201 (238)
T PRK10748 129 WPLVAITNGNAQP-----ELFGLGDYFE--FVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEILHVGDDLTTDVAGAIRCG 201 (238)
T ss_pred CCEEEEECCCchH-----HHCCcHHhhc--eeEecccCCcCCCcHHHHHHHHHHcCCChhHEEEEcCCcHHHHHHHHHCC
Confidence 4456788876432 3468888884 788887653 57799999999986667899999994 7788999999
Q ss_pred CceEEeecCCC------CCCCCCCCccccccccc
Q 022279 259 WPFVKIDLGPG------SCHRFPGLSLRTLGCYL 286 (300)
Q Consensus 259 ~PFwrI~s~~d------~~~~~p~l~~~~~~~~~ 286 (300)
|.++-|..... ..+-.|..+++++....
T Consensus 202 ~~~i~v~~~~~~~~~~~~~~~~p~~~i~~l~el~ 235 (238)
T PRK10748 202 MQACWINPENGDLMQTWDSRLLPHIEISRLASLT 235 (238)
T ss_pred CeEEEEcCCCccccccccccCCCCEEECCHHHHH
Confidence 99998875432 12244666666665433
No 17
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.47 E-value=0.00097 Score=53.74 Aligned_cols=80 Identities=20% Similarity=0.209 Sum_probs=61.4
Q ss_pred ceeEEEEcCCcchHHHHHHHHhhcCcccccCccccccccC----hhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcC
Q 022279 183 EHVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVG----KLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQ 258 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvG----KesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~ 258 (300)
++--++||++.-.-.-.++=-+++..+|+ .|+++...| +..+|+++.+++|-+.-..++|||....-+||+++|
T Consensus 93 ~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~--~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~~vgD~~~d~~~A~~~G 170 (176)
T PF13419_consen 93 GIPLVIVSNGSRERIERVLERLGLDDYFD--EIISSDDVGSRKPDPDAYRRALEKLGIPPEEILFVGDSPSDVEAAKEAG 170 (176)
T ss_dssp TSEEEEEESSEHHHHHHHHHHTTHGGGCS--EEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEEEEESSHHHHHHHHHTT
T ss_pred cceeEEeecCCcccccccccccccccccc--cccccchhhhhhhHHHHHHHHHHHcCCCcceEEEEeCCHHHHHHHHHcC
Confidence 66677888886322223333345555555 888887766 369999999999877889999999999999999999
Q ss_pred CceEEe
Q 022279 259 WPFVKI 264 (300)
Q Consensus 259 ~PFwrI 264 (300)
|+.+-|
T Consensus 171 ~~~i~v 176 (176)
T PF13419_consen 171 IKTIWV 176 (176)
T ss_dssp SEEEEE
T ss_pred CeEEeC
Confidence 998754
No 18
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.44 E-value=0.001 Score=57.63 Aligned_cols=85 Identities=19% Similarity=0.172 Sum_probs=68.6
Q ss_pred ceeEEEEcCCcchHHHHHHHHhhcCcccccCccccccccC--h--hhHHHHHHHHhCCCCcEEEEecCCh-hHHHHHHHc
Q 022279 183 EHVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVG--K--LQCFQWIKERFNNPNVQFCVIGDGW-EEGEAAQAM 257 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvG--K--esCFerI~~RFgg~k~~fvvIGDG~-eEe~aAk~~ 257 (300)
+..-+|||++.-.....++--++|..+| +.|+++..+| | ..+|+.+.+++|-+.-.-|+|||.. ---+||++.
T Consensus 110 g~~~~i~Tn~~~~~~~~~l~~~~l~~~f--~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~igDs~~~di~~A~~a 187 (221)
T TIGR02253 110 GYRLGIITDGLPVKQWEKLERLGVRDFF--DAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAVMVGDRLDKDIKGAKNL 187 (221)
T ss_pred CCEEEEEeCCchHHHHHHHHhCChHHhc--cEEEEeccCCCCCCCHHHHHHHHHHcCCChhhEEEECCChHHHHHHHHHC
Confidence 4667899999755555566667888888 5799887776 4 4799999999986667899999998 588999999
Q ss_pred CCceEEeecCCC
Q 022279 258 QWPFVKIDLGPG 269 (300)
Q Consensus 258 ~~PFwrI~s~~d 269 (300)
||+++-+.....
T Consensus 188 G~~~i~~~~~~~ 199 (221)
T TIGR02253 188 GMKTVWINQGKS 199 (221)
T ss_pred CCEEEEECCCCC
Confidence 999998876543
No 19
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=97.43 E-value=0.0014 Score=55.47 Aligned_cols=78 Identities=15% Similarity=0.006 Sum_probs=58.1
Q ss_pred EEEEcCCcchHHHHHHHHhhcCcccccCccccccccC----hhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCce
Q 022279 186 NILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVG----KLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPF 261 (300)
Q Consensus 186 NVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvG----KesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PF 261 (300)
-+|+|++.---.-.++=-+++..+|.. |.++-.++ +...|+++.+|+|-+.-.-++|||..---+||+..|||+
T Consensus 105 l~I~T~~~~~~~~~~l~~~~l~~~fd~--i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~igDs~~di~aA~~aG~~~ 182 (188)
T PRK10725 105 MAVGTGSESAIAEALLAHLGLRRYFDA--VVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVVFEDADFGIQAARAAGMDA 182 (188)
T ss_pred EEEEcCCchHHHHHHHHhCCcHhHceE--EEehhhccCCCCChHHHHHHHHHcCCCHHHeEEEeccHhhHHHHHHCCCEE
Confidence 356666543334444555788888864 77776543 567899999999854556778899999999999999999
Q ss_pred EEee
Q 022279 262 VKID 265 (300)
Q Consensus 262 wrI~ 265 (300)
+-+.
T Consensus 183 i~~~ 186 (188)
T PRK10725 183 VDVR 186 (188)
T ss_pred Eeec
Confidence 8764
No 20
>PLN02940 riboflavin kinase
Probab=97.32 E-value=0.0025 Score=62.15 Aligned_cols=84 Identities=17% Similarity=0.038 Sum_probs=65.8
Q ss_pred ceeEEEEcCCcchHHHHHHH-HhhcCcccccCccccccccC--h--hhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHc
Q 022279 183 EHVNILVTSGSLIPSLVKCL-LFRLDNLITHGNVYSSWEVG--K--LQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAM 257 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~L-LygL~~~fpieNIYSa~kvG--K--esCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~ 257 (300)
+..-.+||++.-.....++. .+++..+|.. |+++..++ | ...|.++.+++|-+.-.-++|||...--+||++.
T Consensus 109 g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~--ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~~l~VGDs~~Di~aA~~a 186 (382)
T PLN02940 109 GVPMALASNSPRANIEAKISCHQGWKESFSV--IVGGDEVEKGKPSPDIFLEAAKRLNVEPSNCLVIEDSLPGVMAGKAA 186 (382)
T ss_pred CCcEEEEeCCcHHHHHHHHHhccChHhhCCE--EEehhhcCCCCCCHHHHHHHHHHcCCChhHEEEEeCCHHHHHHHHHc
Confidence 55667888886544444555 5788888864 67776653 4 4899999999987777899999999999999999
Q ss_pred CCceEEeecCC
Q 022279 258 QWPFVKIDLGP 268 (300)
Q Consensus 258 ~~PFwrI~s~~ 268 (300)
||+++-|....
T Consensus 187 Gi~~I~v~~g~ 197 (382)
T PLN02940 187 GMEVIAVPSIP 197 (382)
T ss_pred CCEEEEECCCC
Confidence 99999997643
No 21
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=97.28 E-value=0.0012 Score=57.08 Aligned_cols=84 Identities=18% Similarity=0.026 Sum_probs=66.1
Q ss_pred ceeEEEEcCCcchHHHHHHHHhhcCcccccCccccccccC----hhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcC
Q 022279 183 EHVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVG----KLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQ 258 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvG----KesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~ 258 (300)
+..-+++|++.-.-...++=-+++..+|+ .||++-..+ |..+|+++.+++|-+.-.-++|||+..--+||++.|
T Consensus 91 g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~--~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l~igD~~~Di~aA~~~G 168 (205)
T TIGR01454 91 GVGTAIATGKSGPRARSLLEALGLLPLFD--HVIGSDEVPRPKPAPDIVREALRLLDVPPEDAVMVGDAVTDLASARAAG 168 (205)
T ss_pred CCeEEEEeCCchHHHHHHHHHcCChhhee--eEEecCcCCCCCCChHHHHHHHHHcCCChhheEEEcCCHHHHHHHHHcC
Confidence 56778899887655555555677887775 578775543 689999999999855667899999998899999999
Q ss_pred CceEEeecCC
Q 022279 259 WPFVKIDLGP 268 (300)
Q Consensus 259 ~PFwrI~s~~ 268 (300)
|+++-+.-..
T Consensus 169 i~~i~~~~g~ 178 (205)
T TIGR01454 169 TATVAALWGE 178 (205)
T ss_pred CeEEEEEecC
Confidence 9998876443
No 22
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=97.27 E-value=0.0019 Score=53.64 Aligned_cols=77 Identities=19% Similarity=0.091 Sum_probs=58.7
Q ss_pred ceeEEEEcCCcchHHHHHHHH-hhcCcccccCcccccccc--Ch--hhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHc
Q 022279 183 EHVNILVTSGSLIPSLVKCLL-FRLDNLITHGNVYSSWEV--GK--LQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAM 257 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LL-ygL~~~fpieNIYSa~kv--GK--esCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~ 257 (300)
++.-++||++.-.. .+++. ++|..+| +.|+++..+ +| ..+|+++.+++|-+.-..++|||...--+||++.
T Consensus 101 g~~~~i~Tn~~~~~--~~~~~~~~l~~~f--~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~vgD~~~di~aA~~~ 176 (183)
T TIGR01509 101 GKKLALLTNSPRDH--AVLVQELGLRDLF--DVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECLFVDDSPAGIEAAKAA 176 (183)
T ss_pred CCeEEEEeCCchHH--HHHHHhcCCHHHC--CEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEEEEcCCHHHHHHHHHc
Confidence 34457788877554 55555 7887776 456665544 35 6899999999985556789999999999999999
Q ss_pred CCceEE
Q 022279 258 QWPFVK 263 (300)
Q Consensus 258 ~~PFwr 263 (300)
||+.+-
T Consensus 177 G~~~i~ 182 (183)
T TIGR01509 177 GMHTVL 182 (183)
T ss_pred CCEEEe
Confidence 998874
No 23
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=97.26 E-value=0.0069 Score=53.99 Aligned_cols=83 Identities=16% Similarity=0.014 Sum_probs=59.1
Q ss_pred ceeEEEEcCCcchHHHHHHHHhhcCcccccCcccccccc--C--hhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcC
Q 022279 183 EHVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEV--G--KLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQ 258 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kv--G--KesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~ 258 (300)
+..-.+||++.--....++=-+++..+|.+ |+++..+ + +..+|.++.+++|-+.-.-++|||+..--+|||..|
T Consensus 111 g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~--i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~l~IGDs~~Di~aA~~aG 188 (229)
T PRK13226 111 GCVWGIVTNKPEYLARLILPQLGWEQRCAV--LIGGDTLAERKPHPLPLLVAAERIGVAPTDCVYVGDDERDILAARAAG 188 (229)
T ss_pred CCeEEEECCCCHHHHHHHHHHcCchhcccE--EEecCcCCCCCCCHHHHHHHHHHhCCChhhEEEeCCCHHHHHHHHHCC
Confidence 345568888754322222223566666753 5555433 2 567899999999876678999999999999999999
Q ss_pred CceEEeecC
Q 022279 259 WPFVKIDLG 267 (300)
Q Consensus 259 ~PFwrI~s~ 267 (300)
|+++-|.-.
T Consensus 189 ~~~i~v~~g 197 (229)
T PRK13226 189 MPSVAALWG 197 (229)
T ss_pred CcEEEEeec
Confidence 999887543
No 24
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=97.23 E-value=0.0083 Score=49.26 Aligned_cols=70 Identities=21% Similarity=0.233 Sum_probs=47.5
Q ss_pred ceeEEEEcCCcc--hHHHHHHHHhhcCcccccCccccccccC---hhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHc
Q 022279 183 EHVNILVTSGSL--IPSLVKCLLFRLDNLITHGNVYSSWEVG---KLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAM 257 (300)
Q Consensus 183 ~~vNVLVTs~qL--VPaLaK~LLygL~~~fpieNIYSa~kvG---KesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~ 257 (300)
+.--.+||++.- +..+.|.+ +..+|. -|+++-.++ +...|+++.+++|-++ .-++|||....-+||++.
T Consensus 80 g~~~~i~T~~~~~~~~~~~~~~---l~~~f~--~i~~~~~~~~Kp~~~~~~~~~~~~~~~~-~~l~iGDs~~Di~aa~~a 153 (154)
T TIGR01549 80 GIKLGIISNGSLRAQKLLLRKH---LGDYFD--LILGSDEFGAKPEPEIFLAALESLGLPP-EVLHVGDNLNDIEGARNA 153 (154)
T ss_pred cCeEEEEeCCchHHHHHHHHHH---HHhcCc--EEEecCCCCCCcCHHHHHHHHHHcCCCC-CEEEEeCCHHHHHHHHHc
Confidence 455677777652 22223332 555553 245444333 5688999999998766 899999999999999876
Q ss_pred C
Q 022279 258 Q 258 (300)
Q Consensus 258 ~ 258 (300)
|
T Consensus 154 G 154 (154)
T TIGR01549 154 G 154 (154)
T ss_pred c
Confidence 4
No 25
>PRK11587 putative phosphatase; Provisional
Probab=97.13 E-value=0.0057 Score=53.80 Aligned_cols=83 Identities=12% Similarity=-0.010 Sum_probs=60.5
Q ss_pred ceeEEEEcCCcchHHHHHHHHhhcCcccccCcccccccc----ChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcC
Q 022279 183 EHVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEV----GKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQ 258 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kv----GKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~ 258 (300)
+.--.+|||+.--....++-..++. .| .-|+++-.+ .+..+|..+.+++|-+.-.-++|||...--+||++.|
T Consensus 99 g~~~~ivTn~~~~~~~~~l~~~~l~-~~--~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~l~igDs~~di~aA~~aG 175 (218)
T PRK11587 99 GIPWAIVTSGSVPVASARHKAAGLP-AP--EVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVVVEDAPAGVLSGLAAG 175 (218)
T ss_pred CCcEEEEcCCCchHHHHHHHhcCCC-Cc--cEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccEEEEecchhhhHHHHHCC
Confidence 4556788888754444444445553 33 346665333 4568999999999876678899999999999999999
Q ss_pred CceEEeecCC
Q 022279 259 WPFVKIDLGP 268 (300)
Q Consensus 259 ~PFwrI~s~~ 268 (300)
|+++-+....
T Consensus 176 ~~~i~v~~~~ 185 (218)
T PRK11587 176 CHVIAVNAPA 185 (218)
T ss_pred CEEEEECCCC
Confidence 9999997543
No 26
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=97.13 E-value=0.0055 Score=60.54 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=64.7
Q ss_pred ceeEEEEcCCcchHHHHHHHHhhcCcccccCcccccccc---ChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCC
Q 022279 183 EHVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEV---GKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQW 259 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kv---GKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~ 259 (300)
+.--.|||+++---.-.++=-+++..+|+. |.++-.+ +|...|..+.++++ ++ .-++|||...--+|||+.||
T Consensus 346 g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~--i~~~d~v~~~~kP~~~~~al~~l~-~~-~~v~VGDs~~Di~aAk~AG~ 421 (459)
T PRK06698 346 NCSIYIASNGLTEYLRAIVSYYDLDQWVTE--TFSIEQINSLNKSDLVKSILNKYD-IK-EAAVVGDRLSDINAAKDNGL 421 (459)
T ss_pred CCeEEEEeCCchHHHHHHHHHCCcHhhcce--eEecCCCCCCCCcHHHHHHHHhcC-cc-eEEEEeCCHHHHHHHHHCCC
Confidence 556778999877666666666777777743 6665433 68899999999996 65 68999999999999999999
Q ss_pred ceEEeecCC
Q 022279 260 PFVKIDLGP 268 (300)
Q Consensus 260 PFwrI~s~~ 268 (300)
+++-+....
T Consensus 422 ~~I~v~~~~ 430 (459)
T PRK06698 422 IAIGCNFDF 430 (459)
T ss_pred eEEEEeCCC
Confidence 999887643
No 27
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=97.12 E-value=0.0061 Score=53.49 Aligned_cols=83 Identities=11% Similarity=0.056 Sum_probs=61.8
Q ss_pred ceeEEEEcCCcchHHHHHHHHhhcCcccccCccccccccC----hhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcC
Q 022279 183 EHVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVG----KLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQ 258 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvG----KesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~ 258 (300)
+.--+|||++.-.-.-..+=-+++..+| +.|+++-.+| +...|+++.+++|-+.-.-++|||...--+||++.|
T Consensus 108 g~~~~i~S~~~~~~~~~~l~~~~l~~~f--~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~igDs~~Di~aA~~aG 185 (222)
T PRK10826 108 GLKIGLASASPLHMLEAVLTMFDLRDYF--DALASAEKLPYSKPHPEVYLNCAAKLGVDPLTCVALEDSFNGMIAAKAAR 185 (222)
T ss_pred CCeEEEEeCCcHHHHHHHHHhCcchhcc--cEEEEcccCCCCCCCHHHHHHHHHHcCCCHHHeEEEcCChhhHHHHHHcC
Confidence 4556778886643222222237788887 4688876643 346999999999866677899999999999999999
Q ss_pred CceEEeecC
Q 022279 259 WPFVKIDLG 267 (300)
Q Consensus 259 ~PFwrI~s~ 267 (300)
||++-+...
T Consensus 186 ~~~i~v~~~ 194 (222)
T PRK10826 186 MRSIVVPAP 194 (222)
T ss_pred CEEEEecCC
Confidence 999888643
No 28
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=97.09 E-value=0.0022 Score=55.58 Aligned_cols=88 Identities=11% Similarity=0.077 Sum_probs=66.1
Q ss_pred ceeEEEEcCCcchHHHHHHH-H-hhcCcccccCccccccccC----hhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHH
Q 022279 183 EHVNILVTSGSLIPSLVKCL-L-FRLDNLITHGNVYSSWEVG----KLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQA 256 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~L-L-ygL~~~fpieNIYSa~kvG----KesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~ 256 (300)
+.--+++||+.-. ...+++ . .++..+| +.||++-.+| +...|+.+.+++|-+.-.-++|||...--+|||+
T Consensus 100 g~~~~i~Sn~~~~-~~~~~~~~~~~l~~~f--d~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~vgD~~~di~aA~~ 176 (199)
T PRK09456 100 GHRVVVLSNTNRL-HTTFWPEEYPEVRAAA--DHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAVFFDDNADNIEAANA 176 (199)
T ss_pred CCcEEEEcCCchh-hHHHHHhhchhHHHhc--CEEEEecccCCCCCCHHHHHHHHHHcCCChhHeEEeCCCHHHHHHHHH
Confidence 4667888888633 222222 1 2566665 6899998775 4789999999998666778899999999999999
Q ss_pred cCCceEEeecCCCCCCC
Q 022279 257 MQWPFVKIDLGPGSCHR 273 (300)
Q Consensus 257 ~~~PFwrI~s~~d~~~~ 273 (300)
+||.++.+....++.+.
T Consensus 177 aG~~~i~~~~~~~~~~~ 193 (199)
T PRK09456 177 LGITSILVTDKQTIPDY 193 (199)
T ss_pred cCCEEEEecCCccHHHH
Confidence 99999999876655443
No 29
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=96.96 E-value=0.0025 Score=54.22 Aligned_cols=76 Identities=12% Similarity=0.061 Sum_probs=61.3
Q ss_pred EEEEcCCcchHHHHHHHHhhcCcccccCccccccccC--------hhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHc
Q 022279 186 NILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVG--------KLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAM 257 (300)
Q Consensus 186 NVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvG--------KesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~ 257 (300)
.+++||+.....-.++=-+||..+|. .||++..+| +...|+++.+++|-+.-.-++|||...--+||++.
T Consensus 100 ~~i~Tn~~~~~~~~~l~~~gl~~~fd--~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~vgD~~~di~aA~~~ 177 (184)
T TIGR01993 100 KIIFTNGDRAHARRALNRLGIEDCFD--GIFCFDTANPDYLLPKPSPQAYEKALREAGVDPERAIFFDDSARNIAAAKAL 177 (184)
T ss_pred EEEEeCCCHHHHHHHHHHcCcHhhhC--eEEEeecccCccCCCCCCHHHHHHHHHHhCCCccceEEEeCCHHHHHHHHHc
Confidence 57899998766666666667777775 688886654 45699999999986667789999999999999999
Q ss_pred CCceEE
Q 022279 258 QWPFVK 263 (300)
Q Consensus 258 ~~PFwr 263 (300)
||+.+-
T Consensus 178 G~~~i~ 183 (184)
T TIGR01993 178 GMKTVL 183 (184)
T ss_pred CCEEee
Confidence 999764
No 30
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=96.82 E-value=0.0063 Score=54.52 Aligned_cols=84 Identities=19% Similarity=0.102 Sum_probs=67.1
Q ss_pred ceeEEEEcCCcchHHHHHHHHhhcCcccccCccccccccC--h--hhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcC
Q 022279 183 EHVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVG--K--LQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQ 258 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvG--K--esCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~ 258 (300)
++.-.|+||+.-.-...++=-++|..+|. .|+++..+| | ..+|+++.+|+|-+.-.-++|||...--+||+..|
T Consensus 109 g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd--~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~igDs~~di~aA~~aG 186 (224)
T PRK14988 109 GKRRILLTNAHPHNLAVKLEHTGLDAHLD--LLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTLFIDDSEPILDAAAQFG 186 (224)
T ss_pred CCeEEEEeCcCHHHHHHHHHHCCcHHHCC--EEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHcC
Confidence 56678999987666666665678888884 588877664 5 57999999999866678999999999999999999
Q ss_pred Cce-EEeecCC
Q 022279 259 WPF-VKIDLGP 268 (300)
Q Consensus 259 ~PF-wrI~s~~ 268 (300)
|++ |-|..+.
T Consensus 187 ~~~~~~v~~~~ 197 (224)
T PRK14988 187 IRYCLGVTNPD 197 (224)
T ss_pred CeEEEEEeCCC
Confidence 996 6666544
No 31
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=96.73 E-value=0.0065 Score=50.96 Aligned_cols=78 Identities=15% Similarity=0.044 Sum_probs=57.5
Q ss_pred ceeEEEEcCCcchHHHHHHHHhhcCcccccCcccccccc----ChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcC
Q 022279 183 EHVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEV----GKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQ 258 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kv----GKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~ 258 (300)
+..-.|+|++.-.+. ++--++|..+| +.++++-.+ .+..+|+++.+|+|=+.-.-|+|||...--+||++.|
T Consensus 103 g~~~~i~s~~~~~~~--~l~~~~l~~~f--~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v~vgD~~~di~aA~~aG 178 (185)
T TIGR01990 103 NIKIALASASKNAPT--VLEKLGLIDYF--DAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECIGIEDAQAGIEAIKAAG 178 (185)
T ss_pred CCeEEEEeCCccHHH--HHHhcCcHhhC--cEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeEEEecCHHHHHHHHHcC
Confidence 344566777654433 33345777776 567766554 3788999999999855567899999999999999999
Q ss_pred CceEEe
Q 022279 259 WPFVKI 264 (300)
Q Consensus 259 ~PFwrI 264 (300)
|+++-|
T Consensus 179 ~~~i~v 184 (185)
T TIGR01990 179 MFAVGV 184 (185)
T ss_pred CEEEec
Confidence 998754
No 32
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=96.40 E-value=0.005 Score=53.36 Aligned_cols=88 Identities=17% Similarity=0.086 Sum_probs=63.1
Q ss_pred ceeEEEEcCCcchH--HHHHHHHhhcCcccccCccccccccC--h--hhHHHHHHHHhCCCCcEEEEecCChhHHHHHHH
Q 022279 183 EHVNILVTSGSLIP--SLVKCLLFRLDNLITHGNVYSSWEVG--K--LQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQA 256 (300)
Q Consensus 183 ~~vNVLVTs~qLVP--aLaK~LLygL~~~fpieNIYSa~kvG--K--esCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~ 256 (300)
++.-+++||+.-.. .....+-+++..+| +-||++..+| | ...|+.+.+++|-+.-.-++|||....-+||++
T Consensus 110 g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~f--d~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~~~l~i~D~~~di~aA~~ 187 (211)
T TIGR02247 110 GFKTACITNNFPTDHSAEEALLPGDIMALF--DAVVESCLEGLRKPDPRIYQLMLERLGVAPEECVFLDDLGSNLKPAAA 187 (211)
T ss_pred CCeEEEEeCCCCccchhhhHhhhhhhHhhC--CEEEEeeecCCCCCCHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHH
Confidence 45667888875433 22223335676777 4678776654 6 569999999998555566777999999999999
Q ss_pred cCCceEEeecCCCCCC
Q 022279 257 MQWPFVKIDLGPGSCH 272 (300)
Q Consensus 257 ~~~PFwrI~s~~d~~~ 272 (300)
.||+.+.+....++.+
T Consensus 188 aG~~~i~v~~~~~~~~ 203 (211)
T TIGR02247 188 LGITTIKVSDEEQAIH 203 (211)
T ss_pred cCCEEEEECCHHHHHH
Confidence 9999999876554433
No 33
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=96.39 E-value=0.016 Score=44.22 Aligned_cols=43 Identities=14% Similarity=-0.021 Sum_probs=37.0
Q ss_pred cChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCceEE
Q 022279 221 VGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFVK 263 (300)
Q Consensus 221 vGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFwr 263 (300)
.+|...++++.++++.+.-..+.|||+....++|+.++++.+-
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~~i~ 138 (139)
T cd01427 96 KPNPDKLLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGVA 138 (139)
T ss_pred CCCHHHHHHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCceee
Confidence 3578999999999985557788999999999999999998764
No 34
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=96.26 E-value=0.011 Score=51.50 Aligned_cols=82 Identities=9% Similarity=0.039 Sum_probs=61.9
Q ss_pred eEEEEcCCcchHHHHHHHHhhcCcccccCccccccccC----hhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCc
Q 022279 185 VNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVG----KLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWP 260 (300)
Q Consensus 185 vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvG----KesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~P 260 (300)
.=+|||++.-...-.++=.++|..+|+- -|+|+..+| +..+|+.+.+++|-+.-.-++|||...==+||++.||+
T Consensus 103 ~~~ivTn~~~~~~~~~l~~~~l~~~F~~-~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l~igDs~~di~aA~~aG~~ 181 (221)
T PRK10563 103 PMCVVSNGPVSKMQHSLGKTGMLHYFPD-KLFSGYDIQRWKPDPALMFHAAEAMNVNVENCILVDDSSAGAQSGIAAGME 181 (221)
T ss_pred CEEEEeCCcHHHHHHHHHhcChHHhCcc-eEeeHHhcCCCCCChHHHHHHHHHcCCCHHHeEEEeCcHhhHHHHHHCCCE
Confidence 3456788875444444445799999972 266765543 46999999999986556789999999999999999999
Q ss_pred eEEeecC
Q 022279 261 FVKIDLG 267 (300)
Q Consensus 261 FwrI~s~ 267 (300)
++-+...
T Consensus 182 ~i~~~~~ 188 (221)
T PRK10563 182 VFYFCAD 188 (221)
T ss_pred EEEECCC
Confidence 9877543
No 35
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=96.18 E-value=0.073 Score=49.77 Aligned_cols=85 Identities=12% Similarity=0.025 Sum_probs=56.4
Q ss_pred ceeEEEEcCCcchHHHHHHHH-hhcCcccccCcccccccc--Chh--hHHHHHHHHhCCCCcEEEEecCChhHHHHHHHc
Q 022279 183 EHVNILVTSGSLIPSLVKCLL-FRLDNLITHGNVYSSWEV--GKL--QCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAM 257 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LL-ygL~~~fpieNIYSa~kv--GKe--sCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~ 257 (300)
+.-=.|||++. .+.+.++|= +....+|..-.++++..+ +|. .+|.++.+++|-+.-..++|||+..--+||++.
T Consensus 160 g~~l~IvTn~~-~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l~IGDs~~Di~aA~~a 238 (286)
T PLN02779 160 GIKVAVCSTSN-EKAVSKIVNTLLGPERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSRCVVVEDSVIGLQAAKAA 238 (286)
T ss_pred CCeEEEEeCCC-HHHHHHHHHHhccccccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHHEEEEeCCHHhHHHHHHc
Confidence 34445677654 344444432 111234443233344433 454 599999999986667899999999999999999
Q ss_pred CCceEEeecCC
Q 022279 258 QWPFVKIDLGP 268 (300)
Q Consensus 258 ~~PFwrI~s~~ 268 (300)
||+++-+....
T Consensus 239 G~~~i~v~~g~ 249 (286)
T PLN02779 239 GMRCIVTKSSY 249 (286)
T ss_pred CCEEEEEccCC
Confidence 99999986543
No 36
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=96.07 E-value=0.068 Score=48.64 Aligned_cols=85 Identities=11% Similarity=-0.196 Sum_probs=59.9
Q ss_pred ceeEEEEcCCcchHHHHHHHHhhcCcccccCccccccccC--h--hhHHHHHHHHhCCC-CcEEEEecCChhHHHHHHHc
Q 022279 183 EHVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVG--K--LQCFQWIKERFNNP-NVQFCVIGDGWEEGEAAQAM 257 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvG--K--esCFerI~~RFgg~-k~~fvvIGDG~eEe~aAk~~ 257 (300)
+..-.|||++.-...-.++=.+++..+|. +-|+++-.++ | ..+|..+.+|+|-. .-.-++|||...--+||++.
T Consensus 117 g~~l~I~T~~~~~~~~~~l~~~~l~~~~~-d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e~l~IGDs~~Di~aA~~a 195 (267)
T PRK13478 117 GIKIGSTTGYTREMMDVVVPLAAAQGYRP-DHVVTTDDVPAGRPYPWMALKNAIELGVYDVAACVKVDDTVPGIEEGLNA 195 (267)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhhcCCCc-eEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcceEEEcCcHHHHHHHHHC
Confidence 34445566555443333333556666653 5677776543 4 57999999999853 35789999999999999999
Q ss_pred CCceEEeecCC
Q 022279 258 QWPFVKIDLGP 268 (300)
Q Consensus 258 ~~PFwrI~s~~ 268 (300)
||+++-|....
T Consensus 196 G~~~i~v~~g~ 206 (267)
T PRK13478 196 GMWTVGVILSG 206 (267)
T ss_pred CCEEEEEccCc
Confidence 99999997543
No 37
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=95.98 E-value=0.036 Score=47.66 Aligned_cols=77 Identities=22% Similarity=0.158 Sum_probs=56.1
Q ss_pred ceeEEEEcCCcchHHHHHHHHhhcCcccccCccccccccC--h--hhHHHHHHHHhCCCCcEEEEecCCh-hHHHHHHHc
Q 022279 183 EHVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVG--K--LQCFQWIKERFNNPNVQFCVIGDGW-EEGEAAQAM 257 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvG--K--esCFerI~~RFgg~k~~fvvIGDG~-eEe~aAk~~ 257 (300)
+..=++||++.- ....++=-++|..+| +.||++..+| | ..+|+.+.+++|-+.-.-++|||.. ..-+||++.
T Consensus 121 g~~~~i~Sn~~~-~~~~~l~~~~l~~~f--d~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~IgD~~~~Di~~A~~a 197 (203)
T TIGR02252 121 GLILGVISNFDS-RLRGLLEALGLLEYF--DFVVTSYEVGAEKPDPKIFQEALERAGISPEEALHIGDSLRNDYQGARAA 197 (203)
T ss_pred CCEEEEEeCCch-hHHHHHHHCCcHHhc--ceEEeecccCCCCCCHHHHHHHHHHcCCChhHEEEECCCchHHHHHHHHc
Confidence 445678888753 222233235666666 5788887765 5 4589999999987778899999997 579999999
Q ss_pred CCceE
Q 022279 258 QWPFV 262 (300)
Q Consensus 258 ~~PFw 262 (300)
||..+
T Consensus 198 G~~~i 202 (203)
T TIGR02252 198 GWRAL 202 (203)
T ss_pred CCeee
Confidence 99753
No 38
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=95.93 E-value=0.053 Score=50.72 Aligned_cols=83 Identities=17% Similarity=0.069 Sum_probs=63.4
Q ss_pred ceeEEEEcCCcchHHHHHHHHhhcCcccccCcccccccc-ChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCce
Q 022279 183 EHVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEV-GKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPF 261 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kv-GKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PF 261 (300)
+..-.+||++.-...-.++=-+||..+|.. |.++..+ .|...|+++.+++|-+.-.-++|||+..--+||++.||.+
T Consensus 158 gi~laIvSn~~~~~~~~~L~~~gl~~~F~~--vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~IGDs~~Di~aA~~AG~~~ 235 (273)
T PRK13225 158 SLCLGILSSNSRQNIEAFLQRQGLRSLFSV--VQAGTPILSKRRALSQLVAREGWQPAAVMYVGDETRDVEAARQVGLIA 235 (273)
T ss_pred CCeEEEEeCCCHHHHHHHHHHcCChhheEE--EEecCCCCCCHHHHHHHHHHhCcChhHEEEECCCHHHHHHHHHCCCeE
Confidence 445667888875544444445677788763 5555443 4789999999999866667899999999999999999999
Q ss_pred EEeecC
Q 022279 262 VKIDLG 267 (300)
Q Consensus 262 wrI~s~ 267 (300)
+-|...
T Consensus 236 I~v~~g 241 (273)
T PRK13225 236 VAVTWG 241 (273)
T ss_pred EEEecC
Confidence 888654
No 39
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=95.75 E-value=0.22 Score=44.32 Aligned_cols=84 Identities=18% Similarity=0.080 Sum_probs=60.4
Q ss_pred ceeEEEEcC--CcchHHHHHHHHhhcCcccccCccccccccCh--hhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcC
Q 022279 183 EHVNILVTS--GSLIPSLVKCLLFRLDNLITHGNVYSSWEVGK--LQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQ 258 (300)
Q Consensus 183 ~~vNVLVTs--~qLVPaLaK~LLygL~~~fpieNIYSa~kvGK--esCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~ 258 (300)
.+-..+||+ ...+..+.|- +||+.+|..-=-++.....| ..=...+.+++|...-+=+.|||....-+|||+-|
T Consensus 105 g~~l~i~T~k~~~~~~~~l~~--~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l~VGDs~~Di~aA~~Ag 182 (220)
T COG0546 105 GYKLGIVTNKPERELDILLKA--LGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEALMVGDSLNDILAAKAAG 182 (220)
T ss_pred CCeEEEEeCCcHHHHHHHHHH--hCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheEEECCCHHHHHHHHHcC
Confidence 566777885 3444444443 89999998744455444444 45566888999744226799999999999999999
Q ss_pred CceEEeecCC
Q 022279 259 WPFVKIDLGP 268 (300)
Q Consensus 259 ~PFwrI~s~~ 268 (300)
+|++=+....
T Consensus 183 ~~~v~v~~g~ 192 (220)
T COG0546 183 VPAVGVTWGY 192 (220)
T ss_pred CCEEEEECCC
Confidence 9998888754
No 40
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=95.74 E-value=0.12 Score=43.23 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=24.4
Q ss_pred ChhhHHHHHHHHh--CCCCcEEEEecCChhHHHHHH
Q 022279 222 GKLQCFQWIKERF--NNPNVQFCVIGDGWEEGEAAQ 255 (300)
Q Consensus 222 GKesCFerI~~RF--gg~k~~fvvIGDG~eEe~aAk 255 (300)
||..+.++++.+. +.+.-..++||||..-..++|
T Consensus 157 ~K~~~l~~~~~~~~~~~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 157 GKAEALKELYIRDEEDIDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp HHHHHHHHHHHHHHHTHTCCEEEEEESSGGGHHHHH
T ss_pred cHHHHHHHHHHHhhcCCCCCeEEEEECCHHHHHHhC
Confidence 4999999992211 334568999999987766554
No 41
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.74 E-value=0.12 Score=57.14 Aligned_cols=98 Identities=17% Similarity=0.134 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhhcCCcccccccccccccccccCCceeEEEEcCCcchHHHHHHHHhhcC-cccccCccccccccC--h-
Q 022279 148 WLSSARVLLEQCSSGKEVSTSSLGLASLDSADTKSEHVNILVTSGSLIPSLVKCLLFRLD-NLITHGNVYSSWEVG--K- 223 (300)
Q Consensus 148 WLs~A~k~L~~i~~~~~~~~~~~~~~~~~~~~sr~~~vNVLVTs~qLVPaLaK~LLygL~-~~fpieNIYSa~kvG--K- 223 (300)
++.-+..+|+.+.++ ..--++||++...-.-.++=-+++. .+| +-|+++-.++ |
T Consensus 162 ~~pG~~elL~~Lk~~--------------------G~~l~IvSn~~~~~~~~~L~~~gl~~~~F--d~iv~~~~~~~~KP 219 (1057)
T PLN02919 162 GFPGALELITQCKNK--------------------GLKVAVASSADRIKVDANLAAAGLPLSMF--DAIVSADAFENLKP 219 (1057)
T ss_pred cCccHHHHHHHHHhC--------------------CCeEEEEeCCcHHHHHHHHHHcCCChhHC--CEEEECcccccCCC
Confidence 445667777777531 4556788887644332222224453 344 5677776655 4
Q ss_pred -hhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCceEEeecC
Q 022279 224 -LQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFVKIDLG 267 (300)
Q Consensus 224 -esCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFwrI~s~ 267 (300)
..+|+.+.+|+|-..-.-++|||...-.+||+..||+++-|...
T Consensus 220 ~Pe~~~~a~~~lgv~p~e~v~IgDs~~Di~AA~~aGm~~I~v~~~ 264 (1057)
T PLN02919 220 APDIFLAAAKILGVPTSECVVIEDALAGVQAARAAGMRCIAVTTT 264 (1057)
T ss_pred CHHHHHHHHHHcCcCcccEEEEcCCHHHHHHHHHcCCEEEEECCC
Confidence 58999999999866667899999999999999999999999764
No 42
>PLN02954 phosphoserine phosphatase
Probab=95.56 E-value=0.38 Score=42.00 Aligned_cols=40 Identities=28% Similarity=0.339 Sum_probs=32.5
Q ss_pred cChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCceE
Q 022279 221 VGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFV 262 (300)
Q Consensus 221 vGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFw 262 (300)
.+|..+++++++++|. + .-++|||+.---+||+.-++.++
T Consensus 154 ~~K~~~i~~~~~~~~~-~-~~i~iGDs~~Di~aa~~~~~~~~ 193 (224)
T PLN02954 154 GGKAEAVQHIKKKHGY-K-TMVMIGDGATDLEARKPGGADLF 193 (224)
T ss_pred ccHHHHHHHHHHHcCC-C-ceEEEeCCHHHHHhhhcCCCCEE
Confidence 4699999999999973 3 56789999999999888666654
No 43
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=95.44 E-value=0.059 Score=46.58 Aligned_cols=83 Identities=24% Similarity=0.256 Sum_probs=65.6
Q ss_pred eeEEEEcCCcchHHHHHHHHhhcCcccccCccccccccC--h--hhHHHHHHHHhCCCCcEEEEecCChhHH-HHHHHcC
Q 022279 184 HVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVG--K--LQCFQWIKERFNNPNVQFCVIGDGWEEG-EAAQAMQ 258 (300)
Q Consensus 184 ~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvG--K--esCFerI~~RFgg~k~~fvvIGDG~eEe-~aAk~~~ 258 (300)
+--+++|||.-.-+..|+--.||..+| +-|+.|-.+| | ...|+...+++|-++-.-+.|||..+.- .+|+++|
T Consensus 115 ~~l~ilTNg~~~~~~~~l~~~gl~~~F--d~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l~VgD~~~~di~gA~~~G 192 (229)
T COG1011 115 YKLGILTNGARPHQERKLRQLGLLDYF--DAVFISEDVGVAKPDPEIFEYALEKLGVPPEEALFVGDSLENDILGARALG 192 (229)
T ss_pred ccEEEEeCCChHHHHHHHHHcCChhhh--heEEEecccccCCCCcHHHHHHHHHcCCCcceEEEECCChhhhhHHHHhcC
Confidence 667899999544445555445555555 6799999999 4 5799999999986667899999999999 9999999
Q ss_pred CceEEeecCC
Q 022279 259 WPFVKIDLGP 268 (300)
Q Consensus 259 ~PFwrI~s~~ 268 (300)
|--+-|..+.
T Consensus 193 ~~~vwi~~~~ 202 (229)
T COG1011 193 MKTVWINRGG 202 (229)
T ss_pred cEEEEECCCC
Confidence 9987666554
No 44
>PLN02811 hydrolase
Probab=95.34 E-value=0.092 Score=46.35 Aligned_cols=84 Identities=21% Similarity=0.059 Sum_probs=59.7
Q ss_pred ceeEEEEcCCcchHHHHHHHH-hhcCcccccCcccccc--cc--Ch--hhHHHHHHHHhC--CC-CcEEEEecCChhHHH
Q 022279 183 EHVNILVTSGSLIPSLVKCLL-FRLDNLITHGNVYSSW--EV--GK--LQCFQWIKERFN--NP-NVQFCVIGDGWEEGE 252 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LL-ygL~~~fpieNIYSa~--kv--GK--esCFerI~~RFg--g~-k~~fvvIGDG~eEe~ 252 (300)
++.-.|||+.+-.-...+.+- .+|..+|. -|+++- .+ +| ...|....+++| |- .-..|+|||...--+
T Consensus 94 g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~--~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~~v~IgDs~~di~ 171 (220)
T PLN02811 94 GIPIAIATGSHKRHFDLKTQRHGELFSLMH--HVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVDPGKVLVFEDAPSGVE 171 (220)
T ss_pred CCcEEEEeCCchhhHHHHHcccHHHHhhCC--EEEECChhhccCCCCCcHHHHHHHHHhCCCCCCccceEEEeccHhhHH
Confidence 566778888764333333332 35666664 467777 44 34 469999999996 12 246999999999999
Q ss_pred HHHHcCCceEEeecCC
Q 022279 253 AAQAMQWPFVKIDLGP 268 (300)
Q Consensus 253 aAk~~~~PFwrI~s~~ 268 (300)
||++.|||++-|....
T Consensus 172 aA~~aG~~~i~v~~~~ 187 (220)
T PLN02811 172 AAKNAGMSVVMVPDPR 187 (220)
T ss_pred HHHHCCCeEEEEeCCC
Confidence 9999999999996543
No 45
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=94.62 E-value=0.25 Score=45.14 Aligned_cols=80 Identities=16% Similarity=0.101 Sum_probs=54.6
Q ss_pred ceeEEEEcCCcchHHHHHHHHh-----hcCcccccCccccccc--cChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHH
Q 022279 183 EHVNILVTSGSLIPSLVKCLLF-----RLDNLITHGNVYSSWE--VGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQ 255 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LLy-----gL~~~fpieNIYSa~k--vGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk 255 (300)
+.--.++||++.- ..|.++- +|..+| +.+++..- -.+...|++|.+++|-+.-.-++|||...+-+||+
T Consensus 111 G~~l~I~Sn~s~~--~~~~~~~~~~~~~L~~~f--~~~fd~~~g~KP~p~~y~~i~~~lgv~p~e~lfVgDs~~Di~AA~ 186 (220)
T TIGR01691 111 GLRLAVYSSGSVP--AQKLLFGHSDAGNLTPYF--SGYFDTTVGLKTEAQSYVKIAGQLGSPPREILFLSDIINELDAAR 186 (220)
T ss_pred CCEEEEEeCCCHH--HHHHHHhhccccchhhhc--ceEEEeCcccCCCHHHHHHHHHHhCcChhHEEEEeCCHHHHHHHH
Confidence 4556788888542 2333332 233332 22333221 22578999999999866667899999999999999
Q ss_pred HcCCceEEeec
Q 022279 256 AMQWPFVKIDL 266 (300)
Q Consensus 256 ~~~~PFwrI~s 266 (300)
+.||+.+-+..
T Consensus 187 ~AG~~ti~v~r 197 (220)
T TIGR01691 187 KAGLHTGQLVR 197 (220)
T ss_pred HcCCEEEEEEC
Confidence 99999987753
No 46
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=94.60 E-value=0.2 Score=43.56 Aligned_cols=79 Identities=10% Similarity=-0.003 Sum_probs=51.9
Q ss_pred ceeEEEEcCCcchHHHHHHH-HhhcCccccc-----Cccccc-----cc--cChhhHHHHHHHHhCCCCcEEEEecCChh
Q 022279 183 EHVNILVTSGSLIPSLVKCL-LFRLDNLITH-----GNVYSS-----WE--VGKLQCFQWIKERFNNPNVQFCVIGDGWE 249 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~L-LygL~~~fpi-----eNIYSa-----~k--vGKesCFerI~~RFgg~k~~fvvIGDG~e 249 (300)
+..=++||++. -+.+-.++ .+++..+|.. +++|.. .. .+|...|+.+.+++|-+.-.-++|||+..
T Consensus 101 g~~~~IvS~~~-~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~i~iGDs~~ 179 (219)
T TIGR00338 101 GYKVAVISGGF-DLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLRKEGISPENTVAVGDGAN 179 (219)
T ss_pred CCEEEEECCCc-HHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHHHcCCCHHHEEEEECCHH
Confidence 34446777764 22222222 3577766642 233222 11 24899999999999755555667999999
Q ss_pred HHHHHHHcCCceE
Q 022279 250 EGEAAQAMQWPFV 262 (300)
Q Consensus 250 Ee~aAk~~~~PFw 262 (300)
--+||++.++|+.
T Consensus 180 Di~aa~~ag~~i~ 192 (219)
T TIGR00338 180 DLSMIKAAGLGIA 192 (219)
T ss_pred HHHHHHhCCCeEE
Confidence 9999999999974
No 47
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=94.51 E-value=0.29 Score=39.55 Aligned_cols=79 Identities=19% Similarity=0.181 Sum_probs=51.8
Q ss_pred ceeEEEEcCCcc-------hHHHHHHH-HhhcCcccccCccccccccC--hhhHHHHHHHHh-CCCCcEEEEecC-ChhH
Q 022279 183 EHVNILVTSGSL-------IPSLVKCL-LFRLDNLITHGNVYSSWEVG--KLQCFQWIKERF-NNPNVQFCVIGD-GWEE 250 (300)
Q Consensus 183 ~~vNVLVTs~qL-------VPaLaK~L-LygL~~~fpieNIYSa~kvG--KesCFerI~~RF-gg~k~~fvvIGD-G~eE 250 (300)
++.=+++|++.- -..+.+.| -++|. | .-+|++...+ |.+.|+++.+++ +-+.-.-++||| -...
T Consensus 41 g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~--~--~~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~D 116 (132)
T TIGR01662 41 GYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP--I--DVLYACPHCRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTD 116 (132)
T ss_pred CCEEEEEECCccccccHHHHHHHHHHHHHCCCC--E--EEEEECCCCCCCChHHHHHHHHHcCCCChhheEEEcCCCccc
Confidence 556678888761 22222222 23443 2 1223332333 569999999999 355678999999 4788
Q ss_pred HHHHHHcCCceEEee
Q 022279 251 GEAAQAMQWPFVKID 265 (300)
Q Consensus 251 e~aAk~~~~PFwrI~ 265 (300)
-++|+++||+++-+.
T Consensus 117 i~~A~~~Gi~~i~~~ 131 (132)
T TIGR01662 117 LQAAKRAGLAFILVA 131 (132)
T ss_pred HHHHHHCCCeEEEee
Confidence 899999999998765
No 48
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=93.97 E-value=0.4 Score=44.40 Aligned_cols=82 Identities=15% Similarity=0.124 Sum_probs=57.6
Q ss_pred ceeEEEEcCCcchHHHHHHH-HhhcCcccccCccccccc----cChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHc
Q 022279 183 EHVNILVTSGSLIPSLVKCL-LFRLDNLITHGNVYSSWE----VGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAM 257 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~L-LygL~~~fpieNIYSa~k----vGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~ 257 (300)
+.--+|||++.- +.+.++| .++++.+|+. |+++-. ..+...|+++.+++|-+.-.-++|||+..--++|++.
T Consensus 117 g~~l~ivTn~~~-~~~~~~l~~~~i~~~f~~--i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l~IGD~~~Di~aA~~a 193 (272)
T PRK13223 117 GVEMALITNKPE-RFVAPLLDQMKIGRYFRW--IIGGDTLPQKKPDPAALLFVMKMAGVPPSQSLFVGDSRSDVLAAKAA 193 (272)
T ss_pred CCeEEEEECCcH-HHHHHHHHHcCcHhhCeE--EEecCCCCCCCCCcHHHHHHHHHhCCChhHEEEECCCHHHHHHHHHC
Confidence 344466676543 3333332 3577777763 666543 2355799999999974445788999999999999999
Q ss_pred CCceEEeecC
Q 022279 258 QWPFVKIDLG 267 (300)
Q Consensus 258 ~~PFwrI~s~ 267 (300)
||+++-|...
T Consensus 194 Gi~~i~v~~G 203 (272)
T PRK13223 194 GVQCVALSYG 203 (272)
T ss_pred CCeEEEEecC
Confidence 9999888653
No 49
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=93.89 E-value=0.32 Score=41.21 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=35.5
Q ss_pred ChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCceEE
Q 022279 222 GKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFVK 263 (300)
Q Consensus 222 GKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFwr 263 (300)
+|...++++.+++|-+.-.-++|||+..--++|+..++||.-
T Consensus 147 ~k~~~~~~~~~~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~ 188 (201)
T TIGR01491 147 NKGEAVERLKRELNPSLTETVAVGDSKNDLPMFEVADISISL 188 (201)
T ss_pred cHHHHHHHHHHHhCCCHHHEEEEcCCHhHHHHHHhcCCeEEE
Confidence 466789999999975455679999999999999999999864
No 50
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=93.42 E-value=0.38 Score=42.75 Aligned_cols=83 Identities=8% Similarity=-0.047 Sum_probs=57.9
Q ss_pred ceeEEEEcCC-cchHHHHHHH--HhhcC---------cccccCccccccccCh----hhHHHHHHHHh--CCCCcEEEEe
Q 022279 183 EHVNILVTSG-SLIPSLVKCL--LFRLD---------NLITHGNVYSSWEVGK----LQCFQWIKERF--NNPNVQFCVI 244 (300)
Q Consensus 183 ~~vNVLVTs~-qLVPaLaK~L--LygL~---------~~fpieNIYSa~kvGK----esCFerI~~RF--gg~k~~fvvI 244 (300)
+..-.++|+. +- ..++-+ .+++. .+| +.|+++.+.+| ..+++.+.+++ |-+.-.-++|
T Consensus 61 G~~l~I~Sn~~~~--~~~~~~L~~~~l~~~~~~~~~~~~F--d~iv~~~~~~~~kp~~~i~~~~~~~~~~gl~p~e~l~V 136 (174)
T TIGR01685 61 GTYLATASWNDVP--EWAYEILGTFEITYAGKTVPMHSLF--DDRIEIYKPNKAKQLEMILQKVNKVDPSVLKPAQILFF 136 (174)
T ss_pred CCEEEEEeCCCCh--HHHHHHHHhCCcCCCCCcccHHHhc--eeeeeccCCchHHHHHHHHHHhhhcccCCCCHHHeEEE
Confidence 4455677766 32 222222 34554 666 67888877765 45667777766 4456789999
Q ss_pred cCChhHHHHHHHcCCceEEeecCCC
Q 022279 245 GDGWEEGEAAQAMQWPFVKIDLGPG 269 (300)
Q Consensus 245 GDG~eEe~aAk~~~~PFwrI~s~~d 269 (300)
||...--+||++.|++++-+.....
T Consensus 137 gDs~~di~aA~~aGi~~i~v~~g~~ 161 (174)
T TIGR01685 137 DDRTDNVREVWGYGVTSCYCPSGMD 161 (174)
T ss_pred cChhHhHHHHHHhCCEEEEcCCCcc
Confidence 9999999999999999999976543
No 51
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=93.26 E-value=0.98 Score=38.98 Aligned_cols=83 Identities=11% Similarity=-0.031 Sum_probs=56.5
Q ss_pred ceeEEEEcCCcchHHHHHHHHhhcCcccccCccccccccChhhHHHHHHHHhCCCCcEEEEecCCh-hHHHHHHHcCCce
Q 022279 183 EHVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVGKLQCFQWIKERFNNPNVQFCVIGDGW-EEGEAAQAMQWPF 261 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvGKesCFerI~~RFgg~k~~fvvIGDG~-eEe~aAk~~~~PF 261 (300)
+.--+++|+..- ...++-++-.++-. .|+...-.+..+|+.+.+++|-++-.-++|||.. ..-+||+.+||++
T Consensus 59 g~~l~I~Sn~~~-~~~~~~~~~~~gl~-----~~~~~~KP~p~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~~ 132 (170)
T TIGR01668 59 GRKLLIVSNNAG-EQRAKAVEKALGIP-----VLPHAVKPPGCAFRRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSYT 132 (170)
T ss_pred CCEEEEEeCCch-HHHHHHHHHHcCCE-----EEcCCCCCChHHHHHHHHHcCCCHHHEEEECCcchHHHHHHHHcCCeE
Confidence 355678888652 34455444333321 1222223467899999999986667789999998 5788999999999
Q ss_pred EEeecCCCCC
Q 022279 262 VKIDLGPGSC 271 (300)
Q Consensus 262 wrI~s~~d~~ 271 (300)
+-|.......
T Consensus 133 i~v~~g~~~~ 142 (170)
T TIGR01668 133 ILVEPLVHPD 142 (170)
T ss_pred EEEccCcCCc
Confidence 9997665443
No 52
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=93.23 E-value=0.88 Score=39.07 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=38.4
Q ss_pred hhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCce-EEeecC
Q 022279 223 KLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPF-VKIDLG 267 (300)
Q Consensus 223 KesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PF-wrI~s~ 267 (300)
+..+|.++.+|+|-..-.-++|||...--+||++.||++ +=+...
T Consensus 108 ~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~g 153 (176)
T TIGR00213 108 KPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRTG 153 (176)
T ss_pred CHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcEEEEEecC
Confidence 678999999999866677888999999999999999998 455544
No 53
>PRK06769 hypothetical protein; Validated
Probab=93.08 E-value=0.73 Score=39.86 Aligned_cols=46 Identities=22% Similarity=0.248 Sum_probs=40.8
Q ss_pred hhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCceEEeecCC
Q 022279 223 KLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFVKIDLGP 268 (300)
Q Consensus 223 KesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFwrI~s~~ 268 (300)
+..+|..+.+|+|-+.-.-++|||...--+||++.||.++-+....
T Consensus 95 ~p~~~~~~~~~l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v~~g~ 140 (173)
T PRK06769 95 STGMLLQAAEKHGLDLTQCAVIGDRWTDIVAAAKVNATTILVRTGA 140 (173)
T ss_pred CHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCCeEEEEecCC
Confidence 5679999999998655689999999999999999999999998754
No 54
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=93.01 E-value=0.41 Score=39.95 Aligned_cols=40 Identities=23% Similarity=0.172 Sum_probs=32.8
Q ss_pred cChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCceEE
Q 022279 221 VGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFVK 263 (300)
Q Consensus 221 vGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFwr 263 (300)
..|..+++++++++ .-.-+.||||..=-+||+..++-|-|
T Consensus 148 ~~K~~~~~~~~~~~---~~~~i~iGD~~~D~~aa~~~d~~~ar 187 (188)
T TIGR01489 148 CCKGKVIHKLSEPK---YQHIIYIGDGVTDVCPAKLSDVVFAK 187 (188)
T ss_pred CCHHHHHHHHHhhc---CceEEEECCCcchhchHhcCCccccC
Confidence 45999999999886 23577789999999999998887754
No 55
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=92.43 E-value=1.2 Score=38.14 Aligned_cols=46 Identities=26% Similarity=0.179 Sum_probs=40.6
Q ss_pred hhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCceEEeecCC
Q 022279 223 KLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFVKIDLGP 268 (300)
Q Consensus 223 KesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFwrI~s~~ 268 (300)
+...|..+.+++|-+.-.-++|||...--+||+..||++|-+..+.
T Consensus 105 ~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~~g~ 150 (181)
T PRK08942 105 KPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGK 150 (181)
T ss_pred CHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEEEcCCC
Confidence 3689999999998666788899999999999999999999997654
No 56
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=92.33 E-value=0.88 Score=39.48 Aligned_cols=46 Identities=15% Similarity=0.070 Sum_probs=40.5
Q ss_pred ChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCceEEeecC
Q 022279 222 GKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFVKIDLG 267 (300)
Q Consensus 222 GKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFwrI~s~ 267 (300)
.|...|+.+.+++|-.+-.-++|||+..--++|++.||++..+...
T Consensus 104 P~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~~~~ 149 (161)
T TIGR01261 104 PKIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQYDEE 149 (161)
T ss_pred CCHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEEChh
Confidence 5779999999999866667999999999999999999999988653
No 57
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=91.49 E-value=1.2 Score=38.57 Aligned_cols=72 Identities=8% Similarity=-0.051 Sum_probs=55.2
Q ss_pred ceeEEEEcCCcchHHHHHHHHhhcCcccccCcccccccc---ChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHH
Q 022279 183 EHVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEV---GKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQA 256 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kv---GKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~ 256 (300)
...-.|+|++.-.-.-.++=-+||..+| +.|+++-.+ .+...|+.+.++.|-+.-.-++|||+..--+||++
T Consensus 122 g~~~~i~T~~~~~~~~~~l~~~gl~~~f--~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~i~vGD~~~Di~aA~~ 196 (197)
T TIGR01548 122 PKGMAVVTGRPRKDAAKFLTTHGLEILF--PVQIWMEDCPPKPNPEPLILAAKALGVEACHAAMVGDTVDDIITGRK 196 (197)
T ss_pred CCcEEEECCCCHHHHHHHHHHcCchhhC--CEEEeecCCCCCcCHHHHHHHHHHhCcCcccEEEEeCCHHHHHHHHh
Confidence 4556889988766555555567888888 467766553 35889999999998666678999999988888875
No 58
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=91.35 E-value=0.4 Score=35.87 Aligned_cols=48 Identities=19% Similarity=0.092 Sum_probs=41.9
Q ss_pred hhHHHHHHHHhCCCCcEEEEecCC-hhHHHHHHHcCCceEEeecCCCCC
Q 022279 224 LQCFQWIKERFNNPNVQFCVIGDG-WEEGEAAQAMQWPFVKIDLGPGSC 271 (300)
Q Consensus 224 esCFerI~~RFgg~k~~fvvIGDG-~eEe~aAk~~~~PFwrI~s~~d~~ 271 (300)
...|+.+.+++|-+.-+.++|||. ...-++|+++||..+-|.+.....
T Consensus 7 p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~ 55 (75)
T PF13242_consen 7 PGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSP 55 (75)
T ss_dssp HHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCC
T ss_pred HHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCH
Confidence 468999999998677899999999 899999999999999998865443
No 59
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=90.62 E-value=2.5 Score=35.33 Aligned_cols=45 Identities=18% Similarity=0.061 Sum_probs=38.6
Q ss_pred cChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCceEEee
Q 022279 221 VGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFVKID 265 (300)
Q Consensus 221 vGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFwrI~ 265 (300)
-.|...|+.+.+++|-+.-.-++|||...--++|+..||+.+-|.
T Consensus 101 KP~~~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~v~i~ 145 (147)
T TIGR01656 101 KPKPGLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAAVLLV 145 (147)
T ss_pred CCCHHHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCEEEec
Confidence 457889999999998544568889999999999999999998764
No 60
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=90.14 E-value=1.7 Score=37.71 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=49.0
Q ss_pred ceeEEEEcCCcchH----------HHHHHHHhhcCcccccCccccccc--cCh--hhHHHHHHHHhC--CCCcEEEEecC
Q 022279 183 EHVNILVTSGSLIP----------SLVKCLLFRLDNLITHGNVYSSWE--VGK--LQCFQWIKERFN--NPNVQFCVIGD 246 (300)
Q Consensus 183 ~~vNVLVTs~qLVP----------aLaK~LLygL~~~fpieNIYSa~k--vGK--esCFerI~~RFg--g~k~~fvvIGD 246 (300)
++-=++||+.+-+. ..+.-+|=.++-.+ ..++++.. .+| ..+|+++.+++| -..-.-++|||
T Consensus 58 G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~--~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD 135 (166)
T TIGR01664 58 GYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPI--QVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGD 135 (166)
T ss_pred CCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCE--EEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEEC
Confidence 56667888866431 12223343444322 33443332 345 569999999997 33457999999
Q ss_pred Ch--------hHHHHHHHcCCce
Q 022279 247 GW--------EEGEAAQAMQWPF 261 (300)
Q Consensus 247 G~--------eEe~aAk~~~~PF 261 (300)
.. ..-+||++.|++|
T Consensus 136 ~~~~~~~~~~~Di~aA~~aGi~~ 158 (166)
T TIGR01664 136 AAGRKLDFSDADIKFAKNLGLEF 158 (166)
T ss_pred CCCCCCCCchhHHHHHHHCCCCc
Confidence 86 4666999999998
No 61
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=89.34 E-value=0.8 Score=46.50 Aligned_cols=134 Identities=11% Similarity=0.016 Sum_probs=104.8
Q ss_pred CccccccccccCCCCCCCCCccCCCCCCCCCCchh---hhHHHHHHHHHHHHHhcCcccccChHHHHHHHHHHhhhhhhh
Q 022279 69 NTPFLDALKQYDDGRDLSDYEFDRDGLCPPFDDLS---LKKIAYRHRAIAHKYKEGLQNIFDKEMLRVWDELYDMTDEYT 145 (300)
Q Consensus 69 d~~~iddv~~dDnG~DLs~y~F~~dgf~~p~~~~n---mRKLA~ryR~I~e~Y~~~l~~ll~~~~~~~w~~L~~~~d~~T 145 (300)
|...+|++..||--+|=.--+.++-.|..+.-.++ .-+|+++++....+|..+.-.+...+-++..+.+++.++.+|
T Consensus 253 dleecdq~~vDdvs~dDngqdLs~y~f~~d~fsa~~~~~~~l~~~~~v~g~vd~mr~laFr~re~~e~~~~y~nnv~~l~ 332 (468)
T KOG3107|consen 253 DLEECDQVHVDDVSSDDNGQDLSTYNFVTDGFSAFTAFSANLCLKTGVRGGVDWMRKLAFRYREVKEIYNTYKNNVGGLT 332 (468)
T ss_pred HHhhhcccccccccccCCcccccceeeccCCCcCcCccccccccccccchhhhhhhccchhhHHHHHHHHHHHhhhhccc
Confidence 56788888888877773344444555666655553 468999999999999999999998889999999999999999
Q ss_pred hhHHHHHHHHHHHhhcCCcccccccccccccccccCCceeEEEEcCCcchHHHHHHHHhhcCcccccCccccccccChhh
Q 022279 146 DRWLSSARVLLEQCSSGKEVSTSSLGLASLDSADTKSEHVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVGKLQ 225 (300)
Q Consensus 146 d~WLs~A~k~L~~i~~~~~~~~~~~~~~~~~~~~sr~~~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvGKes 225 (300)
+.|+..|..||..|.+. +| ++|-.-++.
T Consensus 333 ~p~~~eaw~~lr~~~ev--------------------------~t--------------------------dsw~tsaLk 360 (468)
T KOG3107|consen 333 GPNKREAWLQLRAEIEV--------------------------LT--------------------------DSWLTSALK 360 (468)
T ss_pred CchhhHHHHHHHHHHHH--------------------------hh--------------------------hhhhhhHHH
Confidence 99999999999887741 11 245555677
Q ss_pred HHHHHHHHhCCCCcEEEEecCChhHHHHHHHc
Q 022279 226 CFQWIKERFNNPNVQFCVIGDGWEEGEAAQAM 257 (300)
Q Consensus 226 CFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~ 257 (300)
|-..|.+|= ||.=|+|..+.==-.+||.|
T Consensus 361 a~s~i~sr~---ncvnVlvTttqLipalaKvL 389 (468)
T KOG3107|consen 361 ALSLISSRK---NCVNVLVTTTQLIPALAKVL 389 (468)
T ss_pred HHhhhhccc---ceeEEEEeccchhHHHHHHH
Confidence 777788874 69999998888777788875
No 62
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=88.71 E-value=14 Score=33.36 Aligned_cols=80 Identities=20% Similarity=0.125 Sum_probs=56.4
Q ss_pred EEEcCCcchHHHHHHH-HhhcCcccccCccccccc-cC--hhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCceE
Q 022279 187 ILVTSGSLIPSLVKCL-LFRLDNLITHGNVYSSWE-VG--KLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFV 262 (300)
Q Consensus 187 VLVTs~qLVPaLaK~L-LygL~~~fpieNIYSa~k-vG--KesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFw 262 (300)
+-|+|++=-...-..| ..||..+|+. .|++.-- .| ...+|-.=.+|+|-..-..|||-|..-==+||++.||-.+
T Consensus 105 ~avaS~s~~~~~~~~L~~~gl~~~f~~-~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~CvviEDs~~Gi~Aa~aAGm~vv 183 (221)
T COG0637 105 LAVASSSPRRAAERVLARLGLLDYFDV-IVTADDVARGKPAPDIYLLAAERLGVDPEECVVVEDSPAGIQAAKAAGMRVV 183 (221)
T ss_pred EEEecCChHHHHHHHHHHccChhhcch-hccHHHHhcCCCCCHHHHHHHHHcCCChHHeEEEecchhHHHHHHHCCCEEE
Confidence 3444444333333333 4788888875 3443322 33 4579999999987566789999999999999999999999
Q ss_pred EeecC
Q 022279 263 KIDLG 267 (300)
Q Consensus 263 rI~s~ 267 (300)
=|...
T Consensus 184 ~v~~~ 188 (221)
T COG0637 184 GVPAG 188 (221)
T ss_pred EecCC
Confidence 98863
No 63
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=88.51 E-value=6.5 Score=36.60 Aligned_cols=119 Identities=14% Similarity=0.060 Sum_probs=72.0
Q ss_pred cccccChHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhcCCcccccccccccccccccCCceeEEEEcCCc---chHHH
Q 022279 122 LQNIFDKEMLRVWDELYDMTDEYTDRWLSSARVLLEQCSSGKEVSTSSLGLASLDSADTKSEHVNILVTSGS---LIPSL 198 (300)
Q Consensus 122 l~~ll~~~~~~~w~~L~~~~d~~Td~WLs~A~k~L~~i~~~~~~~~~~~~~~~~~~~~sr~~~vNVLVTs~q---LVPaL 198 (300)
+.-+.++.-.+.|.++...-...- ..|..+|+.+.++ +.-=.+||+.. --+.+
T Consensus 93 ~~~l~g~~~w~~~~~~~~~~s~p~----~~a~elL~~l~~~--------------------G~~i~iVTnr~~~k~~~~a 148 (237)
T TIGR01672 93 EDYLKNQVFWEKVNNGWDEFSIPK----EVARQLIDMHQRR--------------------GDAIFFVTGRTPGKTDTVS 148 (237)
T ss_pred hhhhcChHHHHHHHHhcccCCcch----hHHHHHHHHHHHC--------------------CCEEEEEeCCCCCcCHHHH
Confidence 344555655666665542100000 1178888887642 33345777752 22333
Q ss_pred HHHH-HhhcCcccccCcccccccc--ChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCceEEeecCCCCC
Q 022279 199 VKCL-LFRLDNLITHGNVYSSWEV--GKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFVKIDLGPGSC 271 (300)
Q Consensus 199 aK~L-LygL~~~fpieNIYSa~kv--GKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFwrI~s~~d~~ 271 (300)
..++ -+|+..+|+. ||++... +|.....++ +++| - | +.|||..---+|||..+++.+++.-.....
T Consensus 149 ~~ll~~lGi~~~f~~--i~~~d~~~~~Kp~~~~~l-~~~~-i-~--i~vGDs~~DI~aAk~AGi~~I~V~~g~~s~ 217 (237)
T TIGR01672 149 KTLAKNFHIPAMNPV--IFAGDKPGQYQYTKTQWI-QDKN-I-R--IHYGDSDNDITAAKEAGARGIRILRASNST 217 (237)
T ss_pred HHHHHHhCCchheeE--EECCCCCCCCCCCHHHHH-HhCC-C-e--EEEeCCHHHHHHHHHCCCCEEEEEecCCCC
Confidence 3333 3788888865 5665554 345555444 5665 2 3 789999999999999999999997555443
No 64
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=87.77 E-value=3.6 Score=33.91 Aligned_cols=48 Identities=13% Similarity=0.055 Sum_probs=36.2
Q ss_pred cCcccccCccccccccChhhHHHHHHHHhC--CCCcEEEEecCChhH-HHHHH
Q 022279 206 LDNLITHGNVYSSWEVGKLQCFQWIKERFN--NPNVQFCVIGDGWEE-GEAAQ 255 (300)
Q Consensus 206 L~~~fpieNIYSa~kvGKesCFerI~~RFg--g~k~~fvvIGDG~eE-e~aAk 255 (300)
|..+| +.++++-...|..+|..+.+++| -++-.-++|||.... ++.+|
T Consensus 76 l~~~f--~~~~~~~~~pkp~~~~~a~~~lg~~~~p~~~l~igDs~~n~~~~~~ 126 (128)
T TIGR01681 76 LAEYF--DPLTIGYWLPKSPRLVEIALKLNGVLKPKSILFVDDRPDNNEEVDY 126 (128)
T ss_pred hHhhh--hhhhhcCCCcHHHHHHHHHHHhcCCCCcceEEEECCCHhHHHHHHh
Confidence 44444 45666645689999999999998 577789999999988 44443
No 65
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=87.62 E-value=0.33 Score=44.65 Aligned_cols=81 Identities=15% Similarity=0.101 Sum_probs=53.3
Q ss_pred EEEcCCcchHHHHHHHHhhcCcccc-cCcccc--ccccChhh--HHHHHHHHhCCCCcEEEEecCCh-hHHHHHHHcCCc
Q 022279 187 ILVTSGSLIPSLVKCLLFRLDNLIT-HGNVYS--SWEVGKLQ--CFQWIKERFNNPNVQFCVIGDGW-EEGEAAQAMQWP 260 (300)
Q Consensus 187 VLVTs~qLVPaLaK~LLygL~~~fp-ieNIYS--a~kvGKes--CFerI~~RFgg~k~~fvvIGDG~-eEe~aAk~~~~P 260 (300)
+++|+............++++.+|. ++..-+ ..-+||.+ .|+.+.+++|-+.-..++|||.. .--.+|++.||+
T Consensus 140 ~iatn~~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~~G~~ 219 (257)
T TIGR01458 140 LIAIGKGRYYKRKDGLALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEAVMIGDDCRDDVGGAQDCGMR 219 (257)
T ss_pred EEEeCCCCCCcCCCCCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhEEEECCCcHHHHHHHHHcCCe
Confidence 4555544433333334456666664 121111 11136554 89999999986677899999996 678899999999
Q ss_pred eEEeecC
Q 022279 261 FVKIDLG 267 (300)
Q Consensus 261 FwrI~s~ 267 (300)
.+-|...
T Consensus 220 ~i~v~~G 226 (257)
T TIGR01458 220 GIQVRTG 226 (257)
T ss_pred EEEECCC
Confidence 9999654
No 66
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=87.56 E-value=2 Score=37.56 Aligned_cols=71 Identities=18% Similarity=0.202 Sum_probs=49.7
Q ss_pred eEEEEcCCcchHHHHHHHHhhcCcccccCccccccccChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCceE
Q 022279 185 VNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFV 262 (300)
Q Consensus 185 vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFw 262 (300)
--+++|+... ..++-++=.++ ++.+|+. ..+|..+++++.+++|-+.-.-++|||+.---++|+..++++.
T Consensus 66 ~v~I~T~~~~--~~v~~~l~~lg----l~~~f~g-~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~~~ 136 (183)
T PRK09484 66 EVAIITGRKS--KLVEDRMTTLG----ITHLYQG-QSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLSVA 136 (183)
T ss_pred EEEEEeCCCc--HHHHHHHHHcC----CceeecC-CCcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCeEe
Confidence 3346776644 22333333332 3344443 3569999999999998555678999999999999999999965
No 67
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=86.46 E-value=0.49 Score=42.83 Aligned_cols=82 Identities=9% Similarity=0.012 Sum_probs=51.4
Q ss_pred eEEEEcC-CcchHHHHHHHHhhcCcccc-cCcccccc--ccC--hhhHHHHHHHHhCCCCc-EEEEecCCh-hHHHHHHH
Q 022279 185 VNILVTS-GSLIPSLVKCLLFRLDNLIT-HGNVYSSW--EVG--KLQCFQWIKERFNNPNV-QFCVIGDGW-EEGEAAQA 256 (300)
Q Consensus 185 vNVLVTs-~qLVPaLaK~LLygL~~~fp-ieNIYSa~--kvG--KesCFerI~~RFgg~k~-~fvvIGDG~-eEe~aAk~ 256 (300)
+-+++|+ ..+.|.-.-.+.++++.+|. ++++.+.. -.| +...|+.+.+++|-++- ++++|||.. ..=++|++
T Consensus 146 ~~~i~tN~d~~~~~~~g~~~~~~g~~~~~i~~~~g~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~ 225 (236)
T TIGR01460 146 VPFIAANRDDLVRLGDGRFRPGAGAIAAGIKELSGREPTVVGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDILGAKN 225 (236)
T ss_pred CeEEEECCCCCCCCCCCcEeecchHHHHHHHHHhCceeeeecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHHHH
Confidence 4566666 33333212234445555443 23333332 134 47899999999973333 358999998 57889999
Q ss_pred cCCceEEeec
Q 022279 257 MQWPFVKIDL 266 (300)
Q Consensus 257 ~~~PFwrI~s 266 (300)
.||+++-|.+
T Consensus 226 ~G~~~i~v~~ 235 (236)
T TIGR01460 226 AGFDTLLVLT 235 (236)
T ss_pred CCCcEEEEec
Confidence 9999988753
No 68
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=85.90 E-value=4.3 Score=40.10 Aligned_cols=45 Identities=16% Similarity=-0.044 Sum_probs=38.4
Q ss_pred ChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCceEEeec
Q 022279 222 GKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFVKIDL 266 (300)
Q Consensus 222 GKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFwrI~s 266 (300)
.|..+|..+.++.+-..-.-++|||+..--+||+..||+|+-|+.
T Consensus 105 P~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I~v~~ 149 (354)
T PRK05446 105 PKTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGIRYAR 149 (354)
T ss_pred CCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEEEEEC
Confidence 356699999998865556788899999999999999999999955
No 69
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=85.56 E-value=0.85 Score=38.16 Aligned_cols=67 Identities=10% Similarity=-0.005 Sum_probs=47.1
Q ss_pred EEcCCcchHHHHHHHHhhcCcccccCccccccccC--h--hhHHHHHHHHhCCCCcEEEEecCChhHHHHHHH
Q 022279 188 LVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVG--K--LQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQA 256 (300)
Q Consensus 188 LVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvG--K--esCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~ 256 (300)
++||+.---.-.++=-++|..+|. .|+|+-.+| | ..+|+++.+|+|-+.-.-++|||..---+|||+
T Consensus 104 i~Tn~~~~~~~~~l~~~~l~~~fd--~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l~vgD~~~Di~~A~~ 174 (175)
T TIGR01493 104 ILSNASHWAFDQFAQQAGLPWYFD--RAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVLMVAAHQWDLIGARK 174 (175)
T ss_pred hhhCCCHHHHHHHHHHCCCHHHHh--hhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeEeEecChhhHHHHhc
Confidence 566664332223333356666664 588887654 4 779999999998666778999999877778875
No 70
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=83.47 E-value=19 Score=30.68 Aligned_cols=43 Identities=14% Similarity=0.106 Sum_probs=33.8
Q ss_pred ChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCceEEe
Q 022279 222 GKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFVKI 264 (300)
Q Consensus 222 GKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFwrI 264 (300)
+|....+++.++.|-..-.-++|||+..--++++..+.|++..
T Consensus 155 ~K~~~l~~~~~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~ 197 (202)
T TIGR01490 155 GKVHALAELLAEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVN 197 (202)
T ss_pred HHHHHHHHHHHHcCCCHHHcEeeeCCcccHHHHHhCCCcEEeC
Confidence 4666788888888632224567899999999999999999864
No 71
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=82.61 E-value=4.6 Score=34.27 Aligned_cols=72 Identities=15% Similarity=0.131 Sum_probs=50.2
Q ss_pred ceeEEEEcCCcchHHHHHHHHhhcCcccccCccccccccChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCce
Q 022279 183 EHVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPF 261 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PF 261 (300)
++.=++||+..--.....+=-+|+..+| ... .+|..-++++.+++|-+.=.-++|||+.---++++..+++|
T Consensus 44 G~~i~IvTn~~~~~~~~~l~~~gi~~~~------~~~-~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ag~~~ 115 (154)
T TIGR01670 44 GIEVAIITGRKAKLVEDRCKTLGITHLY------QGQ-SNKLIAFSDILEKLALAPENVAYIGDDLIDWPVMEKVGLSV 115 (154)
T ss_pred CCEEEEEECCCCHHHHHHHHHcCCCEEE------ecc-cchHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCeE
Confidence 3444567777654332222133444444 332 47999999999999856667889999999999999999994
No 72
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=82.39 E-value=1.6 Score=40.28 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=54.2
Q ss_pred EEEcCCcchHHHHH-HHHhhcCccccc-Ccccc--ccccChhh--HHHHHHHHhCCCCcEEEEecCCh-hHHHHHHHcCC
Q 022279 187 ILVTSGSLIPSLVK-CLLFRLDNLITH-GNVYS--SWEVGKLQ--CFQWIKERFNNPNVQFCVIGDGW-EEGEAAQAMQW 259 (300)
Q Consensus 187 VLVTs~qLVPaLaK-~LLygL~~~fpi-eNIYS--a~kvGKes--CFerI~~RFgg~k~~fvvIGDG~-eEe~aAk~~~~ 259 (300)
.++|+....-...+ ...++++.+|.. +.+.+ ....||.+ -|+.+++++|-++-.-++|||.. .--++|++.||
T Consensus 162 ~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~lmIGD~~~tDI~~A~~aGi 241 (279)
T TIGR01452 162 FVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPARTLMVGDRLETDILFGHRCGM 241 (279)
T ss_pred EEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhEEEECCChHHHHHHHHHcCC
Confidence 56677665322222 234566666542 22222 12357766 78999999986667889999995 56789999999
Q ss_pred ceEEeecC
Q 022279 260 PFVKIDLG 267 (300)
Q Consensus 260 PFwrI~s~ 267 (300)
+++-+...
T Consensus 242 ~si~V~~G 249 (279)
T TIGR01452 242 TTVLVLSG 249 (279)
T ss_pred cEEEECCC
Confidence 99888654
No 73
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=79.03 E-value=3.2 Score=35.59 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=26.7
Q ss_pred ChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCceE
Q 022279 222 GKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFV 262 (300)
Q Consensus 222 GKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFw 262 (300)
+|..+.+++... ...=++||||.---++|+..+++.+
T Consensus 132 ~k~~~l~~~~~~----~~~~v~iGDs~~D~~~~~aa~~~v~ 168 (205)
T PRK13582 132 GKRQAVKALKSL----GYRVIAAGDSYNDTTMLGEADAGIL 168 (205)
T ss_pred hHHHHHHHHHHh----CCeEEEEeCCHHHHHHHHhCCCCEE
Confidence 455666555433 2355889999998889999998875
No 74
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=76.82 E-value=5.8 Score=36.30 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=40.3
Q ss_pred cCh--hhHHHHHHHHhCCCCcEEEEecCCh-hHHHHHHHcCCceEEeecCC
Q 022279 221 VGK--LQCFQWIKERFNNPNVQFCVIGDGW-EEGEAAQAMQWPFVKIDLGP 268 (300)
Q Consensus 221 vGK--esCFerI~~RFgg~k~~fvvIGDG~-eEe~aAk~~~~PFwrI~s~~ 268 (300)
.|| ...|+.+.+++|-+.-..++|||.. ..-.+|++.||+.+-|...-
T Consensus 176 ~gKP~~~~~~~~~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~v~v~~G~ 226 (249)
T TIGR01457 176 IGKPNAIIMEKAVEHLGTEREETLMVGDNYLTDIRAGIDAGIDTLLVHTGV 226 (249)
T ss_pred cCCChHHHHHHHHHHcCCCcccEEEECCCchhhHHHHHHcCCcEEEEcCCC
Confidence 455 6799999999975556899999996 68889999999999997643
No 75
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=76.13 E-value=5.4 Score=35.16 Aligned_cols=77 Identities=12% Similarity=0.124 Sum_probs=59.1
Q ss_pred EEEcCCcchHHHHHHHHhhcCcccccCccccccccChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCceEEeec
Q 022279 187 ILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFVKIDL 266 (300)
Q Consensus 187 VLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFwrI~s 266 (300)
.++|+..--..-..+=-+++..+|.. .| .|...|+.+.+++|-..-.-++|||+.---++++..+++|-.-+.
T Consensus 54 aIiT~k~~~~~~~~l~~lgi~~~f~~------~k-pkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~am~nA 126 (169)
T TIGR02726 54 AIITSKKSGAVRHRAEELKIKRFHEG------IK-KKTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAVAVGDA 126 (169)
T ss_pred EEEECCCcHHHHHHHHHCCCcEEEec------CC-CCHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeEECcCc
Confidence 36676655544444445677777752 23 789999999999974445788999999999999999999999988
Q ss_pred CCCC
Q 022279 267 GPGS 270 (300)
Q Consensus 267 ~~d~ 270 (300)
++.+
T Consensus 127 ~~~l 130 (169)
T TIGR02726 127 VADV 130 (169)
T ss_pred hHHH
Confidence 8754
No 76
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=75.51 E-value=4.6 Score=36.37 Aligned_cols=78 Identities=9% Similarity=0.003 Sum_probs=49.5
Q ss_pred EEEcCCcchHHHHHHHHhhcCccccc-Cccccc--cccCh--hhHHHHHHHHhCCCC-cEEEEecCC-hhHHHHHHHcCC
Q 022279 187 ILVTSGSLIPSLVKCLLFRLDNLITH-GNVYSS--WEVGK--LQCFQWIKERFNNPN-VQFCVIGDG-WEEGEAAQAMQW 259 (300)
Q Consensus 187 VLVTs~qLVPaLaK~LLygL~~~fpi-eNIYSa--~kvGK--esCFerI~~RFgg~k-~~fvvIGDG-~eEe~aAk~~~~ 259 (300)
.++||....-.-.-...++.+.+|.. +. ++. ...|| ...|+.+.+++|.++ -.-++|||. ...-++|++.||
T Consensus 157 ~i~tN~d~~~~~~~~~~~~~g~~~~~i~~-~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~~G~ 235 (242)
T TIGR01459 157 NICANPDRGINQHGIYRYGAGYYAELIKQ-LGGKVIYSGKPYPAIFHKALKECSNIPKNRMLMVGDSFYTDILGANRLGI 235 (242)
T ss_pred EEEECCCEeccCCCceEecccHHHHHHHH-hCCcEecCCCCCHHHHHHHHHHcCCCCcccEEEECCCcHHHHHHHHHCCC
Confidence 35566443322223344556655552 11 222 23576 467999999997443 368899999 577889999999
Q ss_pred ceEEee
Q 022279 260 PFVKID 265 (300)
Q Consensus 260 PFwrI~ 265 (300)
++.-+.
T Consensus 236 ~~i~v~ 241 (242)
T TIGR01459 236 DTALVL 241 (242)
T ss_pred eEEEEe
Confidence 987654
No 77
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=75.30 E-value=32 Score=32.14 Aligned_cols=80 Identities=21% Similarity=0.271 Sum_probs=51.8
Q ss_pred eeEEEEcCCc--chHHHHHHHH--hhc--CcccccCccccccccChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHc
Q 022279 184 HVNILVTSGS--LIPSLVKCLL--FRL--DNLITHGNVYSSWEVGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAM 257 (300)
Q Consensus 184 ~vNVLVTs~q--LVPaLaK~LL--ygL--~~~fpieNIYSa~kvGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~ 257 (300)
.-=++||+.. .--..++-|+ +|+ ..+|++ +++....+|..=.++++ +.| + =+.|||..---+||+..
T Consensus 131 ~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~v--il~gd~~~K~~K~~~l~-~~~---i-~I~IGDs~~Di~aA~~A 203 (237)
T PRK11009 131 DSIYFITGRTATKTETVSKTLADDFHIPADNMNPV--IFAGDKPGQYTKTQWLK-KKN---I-RIFYGDSDNDITAAREA 203 (237)
T ss_pred CeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeE--EEcCCCCCCCCHHHHHH-hcC---C-eEEEcCCHHHHHHHHHc
Confidence 3345667642 3334445554 888 777764 55555333333334444 564 3 35699999999999999
Q ss_pred CCceEEeecCCCC
Q 022279 258 QWPFVKIDLGPGS 270 (300)
Q Consensus 258 ~~PFwrI~s~~d~ 270 (300)
|++++++.-.+..
T Consensus 204 Gi~~I~v~~G~~~ 216 (237)
T PRK11009 204 GARGIRILRAANS 216 (237)
T ss_pred CCcEEEEecCCCC
Confidence 9999999876654
No 78
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=73.92 E-value=5.2 Score=34.47 Aligned_cols=43 Identities=16% Similarity=0.143 Sum_probs=37.2
Q ss_pred cccChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCce
Q 022279 219 WEVGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPF 261 (300)
Q Consensus 219 ~kvGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PF 261 (300)
..++|..+.+++.+++|-+.-.-++|||+..-..+++..++++
T Consensus 160 ~~~~K~~~~~~~~~~~~~~~~~~~~~GD~~nD~~~~~~~~~~v 202 (204)
T TIGR01484 160 AGVDKGSALQALLKELNGKRDEILAFGDSGNDEEMFEVAGLAV 202 (204)
T ss_pred CCCChHHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHHHcCCce
Confidence 3578999999999999755556899999999999999999886
No 79
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=72.12 E-value=22 Score=34.42 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=41.1
Q ss_pred cChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCceEEeecCCCC
Q 022279 221 VGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFVKIDLGPGS 270 (300)
Q Consensus 221 vGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFwrI~s~~d~ 270 (300)
.+|..+++++.+++|-+.-.=++||||..--.+++.-++++-- +..|.+
T Consensus 247 k~K~~~L~~la~~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA~-nAkp~V 295 (322)
T PRK11133 247 QYKADTLTRLAQEYEIPLAQTVAIGDGANDLPMIKAAGLGIAY-HAKPKV 295 (322)
T ss_pred ccHHHHHHHHHHHcCCChhhEEEEECCHHHHHHHHHCCCeEEe-CCCHHH
Confidence 5799999999999986556788999999999999999998875 555543
No 80
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=70.28 E-value=7.9 Score=31.83 Aligned_cols=56 Identities=25% Similarity=0.324 Sum_probs=38.0
Q ss_pred cchHHHHHHHHhh-c--Ccc------cccCcccccccc-ChhhHHHHHHHHhCCCCcEEEEecCChhH
Q 022279 193 SLIPSLVKCLLFR-L--DNL------ITHGNVYSSWEV-GKLQCFQWIKERFNNPNVQFCVIGDGWEE 250 (300)
Q Consensus 193 qLVPaLaK~LLyg-L--~~~------fpieNIYSa~kv-GKesCFerI~~RFgg~k~~fvvIGDG~eE 250 (300)
+|-|.|.+.|-.. + |++ .......++... .|..-.++|.+.| |+.+||.|||..+.
T Consensus 11 nly~~l~~Fl~~~~~P~G~~~Lr~~~~~~~~~~~~~~~~~K~~~i~~i~~~f--P~~kfiLIGDsgq~ 76 (100)
T PF09949_consen 11 NLYPFLRDFLRRNGFPAGPLLLRDYGPSLSGLFKSGAEEHKRDNIERILRDF--PERKFILIGDSGQH 76 (100)
T ss_pred HHHHHHHHHHHhcCCCCCceEcccCCccccccccCCchhHHHHHHHHHHHHC--CCCcEEEEeeCCCc
Confidence 5777777777442 2 221 111233444554 7999999999999 78999999997653
No 81
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=67.94 E-value=27 Score=30.88 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=30.1
Q ss_pred HHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCceEE
Q 022279 226 CFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFVK 263 (300)
Q Consensus 226 CFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFwr 263 (300)
|...+.++++.++-.-++||||.---+||+..+++|.|
T Consensus 148 ~K~~~l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a~ 185 (219)
T PRK09552 148 CKPSLIRKLSDTNDFHIVIGDSITDLEAAKQADKVFAR 185 (219)
T ss_pred chHHHHHHhccCCCCEEEEeCCHHHHHHHHHCCcceeH
Confidence 45567777765544678999999999999999998884
No 82
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=66.69 E-value=21 Score=28.63 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=42.2
Q ss_pred ceeEEEEcCCcchH--HHHHHHHhhcCcccccCccccccccChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcC
Q 022279 183 EHVNILVTSGSLIP--SLVKCLLFRLDNLITHGNVYSSWEVGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQ 258 (300)
Q Consensus 183 ~~vNVLVTs~qLVP--aLaK~LLygL~~~fpieNIYSa~kvGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~ 258 (300)
+.-=++|||.+--+ .+++-| -++|--++-++|++|... +=+.++++++ .+-.||+-.++..++ .+.+|
T Consensus 30 g~~~~~lTNns~~s~~~~~~~L-~~~Gi~~~~~~i~ts~~~----~~~~l~~~~~-~~~v~vlG~~~l~~~--l~~~G 99 (101)
T PF13344_consen 30 GKPVVFLTNNSSRSREEYAKKL-KKLGIPVDEDEIITSGMA----AAEYLKEHKG-GKKVYVLGSDGLREE--LREAG 99 (101)
T ss_dssp TSEEEEEES-SSS-HHHHHHHH-HHTTTT--GGGEEEHHHH----HHHHHHHHTT-SSEEEEES-HHHHHH--HHHTT
T ss_pred CCCEEEEeCCCCCCHHHHHHHH-HhcCcCCCcCEEEChHHH----HHHHHHhcCC-CCEEEEEcCHHHHHH--HHHcC
Confidence 34557899987665 666666 678877888999999864 5567777775 444666666644443 44444
No 83
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=65.10 E-value=32 Score=31.61 Aligned_cols=40 Identities=5% Similarity=-0.185 Sum_probs=30.5
Q ss_pred HHHHHHHHhCC-CCcEEEEecCChhHHHHHHHcCCceEEee
Q 022279 226 CFQWIKERFNN-PNVQFCVIGDGWEEGEAAQAMQWPFVKID 265 (300)
Q Consensus 226 CFerI~~RFgg-~k~~fvvIGDG~eEe~aAk~~~~PFwrI~ 265 (300)
-.+.+.++.+. +.-.-++|||...--+||+..|+|+|-+.
T Consensus 256 ~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v~ 296 (300)
T PHA02530 256 VKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGLECWQVA 296 (300)
T ss_pred HHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCCeEEEec
Confidence 44444445553 22578889999999999999999999884
No 84
>PLN02645 phosphoglycolate phosphatase
Probab=64.87 E-value=13 Score=35.12 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=40.4
Q ss_pred cChh--hHHHHHHHHhCCCCcEEEEecCCh-hHHHHHHHcCCceEEeecCC
Q 022279 221 VGKL--QCFQWIKERFNNPNVQFCVIGDGW-EEGEAAQAMQWPFVKIDLGP 268 (300)
Q Consensus 221 vGKe--sCFerI~~RFgg~k~~fvvIGDG~-eEe~aAk~~~~PFwrI~s~~ 268 (300)
+||. ..|+.+.+++|-++-.-++|||.. ..-++|++.||++.-|.+..
T Consensus 228 ~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~ilV~~G~ 278 (311)
T PLN02645 228 VGKPSTFMMDYLANKFGIEKSQICMVGDRLDTDILFGQNGGCKTLLVLSGV 278 (311)
T ss_pred CCCChHHHHHHHHHHcCCCcccEEEEcCCcHHHHHHHHHcCCCEEEEcCCC
Confidence 3655 589999999987778999999997 67889999999999886543
No 85
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=64.75 E-value=31 Score=30.42 Aligned_cols=36 Identities=28% Similarity=0.378 Sum_probs=25.3
Q ss_pred HHHHHHhCCCCcEEEEecCChhHHHHHHHcCCceEE
Q 022279 228 QWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFVK 263 (300)
Q Consensus 228 erI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFwr 263 (300)
..+.++++.++-.-++||||..--.||+.-++-|.|
T Consensus 146 ~~~l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~~~ar 181 (214)
T TIGR03333 146 PSLIRKLSEPNDYHIVIGDSVTDVEAAKQSDLCFAR 181 (214)
T ss_pred HHHHHHHhhcCCcEEEEeCCHHHHHHHHhCCeeEeh
Confidence 344444332222348899999999999999997776
No 86
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=64.29 E-value=5.9 Score=33.32 Aligned_cols=73 Identities=11% Similarity=-0.067 Sum_probs=46.9
Q ss_pred EEEcCCcchHHHHHHHHhhcCcccccCcccccccc--ChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCce
Q 022279 187 ILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEV--GKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPF 261 (300)
Q Consensus 187 VLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kv--GKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PF 261 (300)
+++|++.---+-..+=.+++...| ...|+++-.+ +|.. |.+..+++|-+.-.-++|||...-.+||+..+++.
T Consensus 64 ~I~Ts~~~~~~~~il~~l~~~~~~-f~~i~~~~d~~~~KP~-~~k~l~~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i 138 (148)
T smart00577 64 VVFTAGLRMYADPVLDLLDPKKYF-GYRRLFRDECVFVKGK-YVKDLSLLGRDLSNVIIIDDSPDSWPFHPENLIPI 138 (148)
T ss_pred EEEeCCcHHHHHHHHHHhCcCCCE-eeeEEECccccccCCe-EeecHHHcCCChhcEEEEECCHHHhhcCccCEEEe
Confidence 455555543222222223443322 2556666554 5766 88888999866678889999999999998776653
No 87
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=62.04 E-value=3.9 Score=35.45 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=13.2
Q ss_pred cceEEEeeCchhhhhHh
Q 022279 5 LTKVFIWDMDETLILLK 21 (300)
Q Consensus 5 l~rVFIWDLDETlIif~ 21 (300)
-+.+-|+|||||||=..
T Consensus 5 ~kl~LVLDLDeTLihs~ 21 (156)
T TIGR02250 5 KKLHLVLDLDQTLIHTT 21 (156)
T ss_pred CceEEEEeCCCCccccc
Confidence 35678999999998443
No 88
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=60.86 E-value=13 Score=32.42 Aligned_cols=51 Identities=14% Similarity=0.080 Sum_probs=43.7
Q ss_pred ccccChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCceEEeecCC
Q 022279 218 SWEVGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFVKIDLGP 268 (300)
Q Consensus 218 a~kvGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFwrI~s~~ 268 (300)
+..+.|.+..+++.+++|-+.-..++|||+.--.+..+..+++|---+.++
T Consensus 143 ~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~~ml~~ag~~vam~na~~ 193 (215)
T TIGR01487 143 KKGVDKGVGVEKLKELLGIKPEEVAAIGDSENDIDLFRVVGFKVAVANADD 193 (215)
T ss_pred cCCCChHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHhCCCeEEcCCccH
Confidence 456789999999999998554578999999999999999999988777666
No 89
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=60.76 E-value=1.5e+02 Score=29.79 Aligned_cols=75 Identities=12% Similarity=0.192 Sum_probs=48.1
Q ss_pred EEEcCCcchHHHHHHHHhhcCcccccCcccc-----------ccccChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHH
Q 022279 187 ILVTSGSLIPSLVKCLLFRLDNLITHGNVYS-----------SWEVGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQ 255 (300)
Q Consensus 187 VLVTs~qLVPaLaK~LLygL~~~fpieNIYS-----------a~kvGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk 255 (300)
++.+.+.++-+|+++|. .||--+..=-+.+ ...++...=++++..+.+ +. ++||...+ ...|+
T Consensus 315 ai~~~~~~~~~l~~~l~-elGm~v~~~~~~~~~~~~~~~~~~~~~~~D~~~l~~~i~~~~-~d---liig~s~~-k~~A~ 388 (432)
T TIGR01285 315 AIAAEPDLLAAWATFFT-SMGAQIVAAVTTTGSPLLQKLPVETVVIGDLEDLEDLACAAG-AD---LLITNSHG-RALAQ 388 (432)
T ss_pred EEEcCHHHHHHHHHHHH-HCCCEEEEEEeCCCCHHHHhCCcCcEEeCCHHHHHHHHhhcC-CC---EEEECcch-HHHHH
Confidence 56677788899999965 6775432211111 112244444566666663 43 67788876 66899
Q ss_pred HcCCceEEeecC
Q 022279 256 AMQWPFVKIDLG 267 (300)
Q Consensus 256 ~~~~PFwrI~s~ 267 (300)
++++||+|++.-
T Consensus 389 ~l~ip~ir~g~P 400 (432)
T TIGR01285 389 RLALPLVRAGFP 400 (432)
T ss_pred HcCCCEEEecCC
Confidence 999999998763
No 90
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=60.30 E-value=55 Score=27.57 Aligned_cols=86 Identities=13% Similarity=0.133 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHhhcCCcccccccccccccccccCCceeEEEEcCCcchHHHHHHHHhhcCcccccCcccccc--ccChh
Q 022279 147 RWLSSARVLLEQCSSGKEVSTSSLGLASLDSADTKSEHVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSW--EVGKL 224 (300)
Q Consensus 147 ~WLs~A~k~L~~i~~~~~~~~~~~~~~~~~~~~sr~~~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~--kvGKe 224 (300)
.-...|..+|..+... +.--+++|......+-+.+-..|+.. .+||+-. |- ..
T Consensus 127 ~~~~~~~~~l~~L~~~--------------------Gi~~~i~TGD~~~~a~~~~~~lgi~~----~~v~a~~~~kP-~~ 181 (215)
T PF00702_consen 127 PLRPGAKEALQELKEA--------------------GIKVAILTGDNESTASAIAKQLGIFD----SIVFARVIGKP-EP 181 (215)
T ss_dssp EBHTTHHHHHHHHHHT--------------------TEEEEEEESSEHHHHHHHHHHTTSCS----EEEEESHETTT-HH
T ss_pred cchhhhhhhhhhhhcc--------------------Ccceeeeecccccccccccccccccc----ccccccccccc-cc
Confidence 3344567777776531 34456778777777666666677733 2244443 32 12
Q ss_pred hHHHHHHHHhCCCCcEEEEecCChhHHHHHHHc
Q 022279 225 QCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAM 257 (300)
Q Consensus 225 sCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~ 257 (300)
..|.+|.++.+-++-+=++||||.---.|+|+.
T Consensus 182 k~~~~~i~~l~~~~~~v~~vGDg~nD~~al~~A 214 (215)
T PF00702_consen 182 KIFLRIIKELQVKPGEVAMVGDGVNDAPALKAA 214 (215)
T ss_dssp HHHHHHHHHHTCTGGGEEEEESSGGHHHHHHHS
T ss_pred hhHHHHHHHHhcCCCEEEEEccCHHHHHHHHhC
Confidence 388999999973444889999999888888864
No 91
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=59.06 E-value=20 Score=29.42 Aligned_cols=48 Identities=17% Similarity=0.293 Sum_probs=35.1
Q ss_pred hHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcC-------CceEEeecCCCCCCCCC
Q 022279 225 QCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQ-------WPFVKIDLGPGSCHRFP 275 (300)
Q Consensus 225 sCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~-------~PFwrI~s~~d~~~~~p 275 (300)
.-|+-|.+.|.|.|+.||+ .|..++..+++.+| +|.++|....+ ++||
T Consensus 38 ~~~~~vAk~fk~gki~Fv~-~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~--~KY~ 92 (111)
T cd03073 38 NRVLKVAKDFPDRKLNFAV-ADKEDFSHELEEFGLDFSGGEKPVVAIRTAKG--KKYV 92 (111)
T ss_pred HHHHHHHHHCcCCeEEEEE-EcHHHHHHHHHHcCCCcccCCCCEEEEEeCCC--CccC
Confidence 4577888899523678776 67777766777765 89999977644 7887
No 92
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=58.19 E-value=56 Score=26.98 Aligned_cols=37 Identities=11% Similarity=0.011 Sum_probs=28.2
Q ss_pred ccChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHH
Q 022279 220 EVGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQA 256 (300)
Q Consensus 220 kvGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~ 256 (300)
..+|....+++.++.|-+.-.-++||||..--.+++.
T Consensus 140 ~~~K~~~l~~~~~~~~~~~~~~~~iGDs~~D~~~~~~ 176 (177)
T TIGR01488 140 GECKGKVLKELLEESKITLKKIIAVGDSVNDLPMLKL 176 (177)
T ss_pred cchHHHHHHHHHHHhCCCHHHEEEEeCCHHHHHHHhc
Confidence 4578889999999876333456899999988877663
No 93
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=57.96 E-value=20 Score=24.22 Aligned_cols=41 Identities=12% Similarity=0.153 Sum_probs=29.6
Q ss_pred hhHHHHHHHHhCC-------CCcEEEEecCChhHH--HHHHHcCCceEEe
Q 022279 224 LQCFQWIKERFNN-------PNVQFCVIGDGWEEG--EAAQAMQWPFVKI 264 (300)
Q Consensus 224 esCFerI~~RFgg-------~k~~fvvIGDG~eEe--~aAk~~~~PFwrI 264 (300)
.+-++++.+.+|| +.+++||+++..... ..|+..+.|+++.
T Consensus 15 ~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~~~~~~~~~~~~~iV~~ 64 (72)
T cd00027 15 RDELKELIEKLGGKVTSSVSKKTTHVIVGSDAGPKKLLKAIKLGIPIVTP 64 (72)
T ss_pred HHHHHHHHHHcCCEEeccccCCceEEEECCCCCchHHHHHHHcCCeEecH
Confidence 3456666677765 379999999887764 5677788887764
No 94
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=57.33 E-value=20 Score=25.68 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=27.7
Q ss_pred HHHHHHhCC-------CCcEEEEecC---ChhHHHHHHHcCCceEEe
Q 022279 228 QWIKERFNN-------PNVQFCVIGD---GWEEGEAAQAMQWPFVKI 264 (300)
Q Consensus 228 erI~~RFgg-------~k~~fvvIGD---G~eEe~aAk~~~~PFwrI 264 (300)
+++++++|| ++|+++|++. ...+..+|...+.|+++.
T Consensus 25 ~~~i~~~GG~v~~~~~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~~ 71 (78)
T PF00533_consen 25 EQLIKKHGGTVSNSFSKKTTHVIVGNPNKRTKKYKAAIANGIPIVSP 71 (78)
T ss_dssp HHHHHHTTEEEESSSSTTSSEEEESSSHCCCHHHHHHHHTTSEEEET
T ss_pred HHHHHHcCCEEEeecccCcEEEEeCCCCCccHHHHHHHHCCCeEecH
Confidence 556666654 5689999995 556677889999999864
No 95
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=56.33 E-value=70 Score=30.38 Aligned_cols=70 Identities=14% Similarity=0.095 Sum_probs=48.3
Q ss_pred ceeEEEEcCCcchHHHHHHHHh------hcCcccccCccccccccChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHH
Q 022279 183 EHVNILVTSGSLIPSLVKCLLF------RLDNLITHGNVYSSWEVGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQA 256 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LLy------gL~~~fpieNIYSa~kvGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~ 256 (300)
...-.++|+..- ..|+-+|- ++..+|.. +...|| .|-..+..|.+++|-..=.+|.|||..-|.++++.
T Consensus 47 Gi~lai~S~n~~--~~a~~~l~~~~~~~~~~~~f~~--~~~~~~-pk~~~i~~~~~~l~i~~~~~vfidD~~~d~~~~~~ 121 (320)
T TIGR01686 47 GFLLALASKNDE--DDAKKVFERRKDFILQAEDFDA--RSINWG-PKSESLRKIAKKLNLGTDSFLFIDDNPAERANVKI 121 (320)
T ss_pred CCEEEEEcCCCH--HHHHHHHHhCccccCcHHHeeE--EEEecC-chHHHHHHHHHHhCCCcCcEEEECCCHHHHHHHHH
Confidence 445556666643 33444443 34444533 334465 79999999999998555699999999999998887
Q ss_pred c
Q 022279 257 M 257 (300)
Q Consensus 257 ~ 257 (300)
.
T Consensus 122 ~ 122 (320)
T TIGR01686 122 T 122 (320)
T ss_pred H
Confidence 4
No 96
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=55.02 E-value=5.5 Score=32.84 Aligned_cols=12 Identities=50% Similarity=0.891 Sum_probs=10.8
Q ss_pred eEEEeeCchhhh
Q 022279 7 KVFIWDMDETLI 18 (300)
Q Consensus 7 rVFIWDLDETlI 18 (300)
+++|||||.||.
T Consensus 1 kli~~DlD~Tl~ 12 (128)
T TIGR01681 1 KVIVFDLDNTLW 12 (128)
T ss_pred CEEEEeCCCCCC
Confidence 578999999998
No 97
>PRK10444 UMP phosphatase; Provisional
Probab=55.02 E-value=26 Score=32.42 Aligned_cols=47 Identities=9% Similarity=0.029 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHhCCCCcEEEEecCCh-hHHHHHHHcCCceEEeecCCC
Q 022279 223 KLQCFQWIKERFNNPNVQFCVIGDGW-EEGEAAQAMQWPFVKIDLGPG 269 (300)
Q Consensus 223 KesCFerI~~RFgg~k~~fvvIGDG~-eEe~aAk~~~~PFwrI~s~~d 269 (300)
+...|+.+++++|-++-.-++|||.. ..-.+|+..+|+++-|.+...
T Consensus 176 ~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~G~~ 223 (248)
T PRK10444 176 SPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVS 223 (248)
T ss_pred CHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEEEECCCCC
Confidence 45789999999975566789999997 578899999999999976543
No 98
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=54.96 E-value=13 Score=25.02 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=17.7
Q ss_pred CceeEEEEcCCcchHHHHHHHH
Q 022279 182 SEHVNILVTSGSLIPSLVKCLL 203 (300)
Q Consensus 182 ~~~vNVLVTs~qLVPaLaK~LL 203 (300)
...+.|.|||+.--|.||+.+=
T Consensus 2 ~g~LqI~ISTnG~sP~la~~iR 23 (30)
T PF14824_consen 2 RGPLQIAISTNGKSPRLARLIR 23 (30)
T ss_dssp -TTEEEEEEESSS-HHHHHHHH
T ss_pred CCCeEEEEECCCCChHHHHHHH
Confidence 4568899999999999999873
No 99
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=53.96 E-value=9.4 Score=31.57 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=22.6
Q ss_pred ccceEEEeeCchhhhhHhhhhhhhhhhh
Q 022279 4 TLTKVFIWDMDETLILLKSLLNGTFAQS 31 (300)
Q Consensus 4 ~l~rVFIWDLDETlIif~SLLtg~yA~~ 31 (300)
+-+|++.|++||-++++-.+.=|-.++.
T Consensus 17 ~~~ri~~~~~DE~~~~~~~~~~Gi~~~~ 44 (101)
T PRK13707 17 NQSRWFGLPLDELIPAAICIGWGITTSK 44 (101)
T ss_pred CCCeEEeeeHHHHHHHHHHHHHHHHHch
Confidence 4589999999999998877777666654
No 100
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=52.41 E-value=7.3 Score=32.90 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=14.3
Q ss_pred ceEEEeeCchhhhhHhhh
Q 022279 6 TKVFIWDMDETLILLKSL 23 (300)
Q Consensus 6 ~rVFIWDLDETlIif~SL 23 (300)
.+..|||||.|||=..+.
T Consensus 4 ~k~viFD~DGTLid~~~~ 21 (201)
T TIGR01491 4 IKLIIFDLDGTLTDVMSS 21 (201)
T ss_pred ceEEEEeCCCCCcCCccH
Confidence 468999999999975543
No 101
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=52.10 E-value=7.7 Score=34.82 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=38.5
Q ss_pred cccChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCceEEeecCCCCCCCCCCC
Q 022279 219 WEVGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFVKIDLGPGSCHRFPGL 277 (300)
Q Consensus 219 ~kvGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFwrI~s~~d~~~~~p~l 277 (300)
.+-+|....+.++ +-| ..-++||||..--.+++.-+.|+.-. ..|.+....|.+
T Consensus 129 ~~~~K~~~l~~l~-~~~---~~~v~vGDs~nDl~ml~~Ag~~ia~~-ak~~~~~~~~~~ 182 (203)
T TIGR02137 129 QKDPKRQSVIAFK-SLY---YRVIAAGDSYNDTTMLSEAHAGILFH-APENVIREFPQF 182 (203)
T ss_pred CcchHHHHHHHHH-hhC---CCEEEEeCCHHHHHHHHhCCCCEEec-CCHHHHHhCCCC
Confidence 4567998888884 443 25678899999999999999998743 344444445543
No 102
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=52.08 E-value=2.7e+02 Score=28.24 Aligned_cols=72 Identities=15% Similarity=0.247 Sum_probs=45.3
Q ss_pred EEEcCCcchHHHHHHHHhhcCcccccCccccccc-------------cChhhHHHHHHHHhCCCCcEEEEecCChhHHHH
Q 022279 187 ILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWE-------------VGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEA 253 (300)
Q Consensus 187 VLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~k-------------vGKesCFerI~~RFgg~k~~fvvIGDG~eEe~a 253 (300)
++++....+-+|+|.|. .||-.+.. +++... ++-.+-+|.... + .=++||++.+ ...
T Consensus 315 ai~~~~~~~~~la~~L~-elG~~v~~--~~~~~~~~~~~~~~~~~i~~~D~~~le~~~~-----~-~dliig~s~~-~~~ 384 (455)
T PRK14476 315 AIAAEPDLLLALGSFLA-EMGAEIVA--AVTTTKSPALEDLPAEEVLIGDLEDLEELAE-----G-ADLLITNSHG-RQA 384 (455)
T ss_pred EEEeCHHHHHHHHHHHH-HCCCEEEE--EEeCCCcHHHHhCCcCcEEeCCHHHHHHhcc-----C-CCEEEECchh-HHH
Confidence 45666778889999998 88865544 222111 222233333322 2 2367888876 557
Q ss_pred HHHcCCceEEeecCC
Q 022279 254 AQAMQWPFVKIDLGP 268 (300)
Q Consensus 254 Ak~~~~PFwrI~s~~ 268 (300)
|++++.||.+++...
T Consensus 385 a~~~gip~~~~g~Pi 399 (455)
T PRK14476 385 AERLGIPLLRVGFPI 399 (455)
T ss_pred HHHcCCCEEEecCCc
Confidence 999999999987654
No 103
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=51.87 E-value=18 Score=25.08 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=21.4
Q ss_pred CcEEEEecCChhHH---HHHHHcCCceEEee
Q 022279 238 NVQFCVIGDGWEEG---EAAQAMQWPFVKID 265 (300)
Q Consensus 238 k~~fvvIGDG~eEe---~aAk~~~~PFwrI~ 265 (300)
++++||+++...++ .+|...+.|.++.+
T Consensus 41 ~~thvi~~~~~~~~~~~~~~~~~~~~iV~~~ 71 (80)
T smart00292 41 TTTHVIVGSPEGGKLELLLAIALGIPIVTED 71 (80)
T ss_pred ceeEEEEcCCCCccHHHHHHHHcCCCCccHH
Confidence 78999999877655 66777888887653
No 104
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=51.81 E-value=56 Score=31.66 Aligned_cols=82 Identities=23% Similarity=0.278 Sum_probs=54.2
Q ss_pred ceeEEEEcCCcchHHHHHHHHhhcCc-----ccccCccccccc-cC-hhhHHHHHHHHhCCCCcEEEEecCChhH---HH
Q 022279 183 EHVNILVTSGSLIPSLVKCLLFRLDN-----LITHGNVYSSWE-VG-KLQCFQWIKERFNNPNVQFCVIGDGWEE---GE 252 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LLygL~~-----~fpieNIYSa~k-vG-KesCFerI~~RFgg~k~~fvvIGDG~eE---e~ 252 (300)
--+-++||..+|.|.+..-+.-+++- .++.++ -|-.+ +| =..+|..+.++.. |. --+|.||..+- ..
T Consensus 9 ~~~~li~tG~H~~~~~g~~~~~~f~i~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~-Pd-~Vlv~GD~~~~la~al 85 (346)
T PF02350_consen 9 FELILIVTGQHLDPEMGDTFFEGFGIPKPDYLLDSDS-QSMAKSTGLAIIELADVLEREK-PD-AVLVLGDRNEALAAAL 85 (346)
T ss_dssp EEEEEEEECSS--CHHHHHHHHHTT--SEEEE--STT-S-HHHHHHHHHHHHHHHHHHHT--S-EEEEETTSHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHhhCCCCCCCccccccc-chHHHHHHHHHHHHHHHHHhcC-CC-EEEEEcCCchHHHHHH
Confidence 45778999999999999998877766 122233 22222 34 3578999999994 76 55689999885 55
Q ss_pred HHHHcCCceEEeecC
Q 022279 253 AAQAMQWPFVKIDLG 267 (300)
Q Consensus 253 aAk~~~~PFwrI~s~ 267 (300)
||..+++|+..|...
T Consensus 86 aA~~~~ipv~HieaG 100 (346)
T PF02350_consen 86 AAFYLNIPVAHIEAG 100 (346)
T ss_dssp HHHHTT-EEEEES--
T ss_pred HHHHhCCCEEEecCC
Confidence 788999999999876
No 105
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=49.54 E-value=23 Score=30.87 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=41.8
Q ss_pred ccChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCceEEeecCC
Q 022279 220 EVGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFVKIDLGP 268 (300)
Q Consensus 220 kvGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFwrI~s~~ 268 (300)
.+.|....+++.+++|=++-.-++|||+.--.+.++..+++|.--+.++
T Consensus 155 ~~~Kg~al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~Na~~ 203 (230)
T PRK01158 155 GVNKGTGLKKLAELMGIDPEEVAAIGDSENDLEMFEVAGFGVAVANADE 203 (230)
T ss_pred CCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhcCceEEecCccH
Confidence 3569999999999998555678999999999999999999997666555
No 106
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=48.88 E-value=65 Score=28.79 Aligned_cols=92 Identities=20% Similarity=0.238 Sum_probs=59.1
Q ss_pred ceeEEEEcCCcchHHHHHHHH--hhcC----------cccccCccccccccChhhHHHHHHHHhCCCCcEEEEecCChhH
Q 022279 183 EHVNILVTSGSLIPSLVKCLL--FRLD----------NLITHGNVYSSWEVGKLQCFQWIKERFNNPNVQFCVIGDGWEE 250 (300)
Q Consensus 183 ~~vNVLVTs~qLVPaLaK~LL--ygL~----------~~fpieNIYSa~kvGKesCFerI~~RFgg~k~~fvvIGDG~eE 250 (300)
+.+-+-|-|..=-|..||=+| +++. .+|...-||.. .|-.=|++|+++-|=+--..+-.=|-.-.
T Consensus 60 ~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~g---sK~~Hf~~i~~~tgI~y~eMlFFDDe~~N 136 (169)
T PF12689_consen 60 RGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPG---SKTTHFRRIHRKTGIPYEEMLFFDDESRN 136 (169)
T ss_dssp CT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS----HHHHHHHHHHHH---GGGEEEEES-HHH
T ss_pred CCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecC---chHHHHHHHHHhcCCChhHEEEecCchhc
Confidence 345566666666788888776 5667 77877778875 58899999999988666777888888888
Q ss_pred HHHHHHcCCceEEeecCCCCCCCCCCCccccccccc
Q 022279 251 GEAAQAMQWPFVKIDLGPGSCHRFPGLSLRTLGCYL 286 (300)
Q Consensus 251 e~aAk~~~~PFwrI~s~~d~~~~~p~l~~~~~~~~~ 286 (300)
.+..+++|.-|+.+.. |++.+.++..+
T Consensus 137 ~~~v~~lGV~~v~v~~---------Glt~~~~~~gL 163 (169)
T PF12689_consen 137 IEVVSKLGVTCVLVPD---------GLTWDEFERGL 163 (169)
T ss_dssp HHHHHTTT-EEEE-SS---------S--HHHHHHHH
T ss_pred ceeeEecCcEEEEeCC---------CCCHHHHHHHH
Confidence 8888889999998865 66666555433
No 107
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=48.23 E-value=72 Score=28.61 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=17.2
Q ss_pred eEEEeeCchhhhhHhhhhhhhhhhhcC
Q 022279 7 KVFIWDMDETLILLKSLLNGTFAQSFN 33 (300)
Q Consensus 7 rVFIWDLDETlIif~SLLtg~yA~~~~ 33 (300)
|+.++|||+|||=- + -..|+.+.|
T Consensus 2 ~la~FDlD~TLi~~--~-w~~~~~~~g 25 (203)
T TIGR02137 2 EIACLDLEGVLVPE--I-WIAFAEKTG 25 (203)
T ss_pred eEEEEeCCcccHHH--H-HHHHHHHcC
Confidence 67899999999943 2 346666654
No 108
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=46.78 E-value=29 Score=30.02 Aligned_cols=49 Identities=16% Similarity=0.123 Sum_probs=42.0
Q ss_pred ccChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCceEEeecCC
Q 022279 220 EVGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFVKIDLGP 268 (300)
Q Consensus 220 kvGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFwrI~s~~ 268 (300)
.++|-.-.+++.+++|-+.-.-++|||+.---+.++..+++|--=+.++
T Consensus 147 ~~~K~~~i~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~Na~~ 195 (225)
T TIGR01482 147 GVNKGVAVKKLKEKLGIKPGETLVCGDSENDIDLFEVPGFGVAVANAQP 195 (225)
T ss_pred CCCHHHHHHHHHHHhCCCHHHEEEECCCHhhHHHHHhcCceEEcCChhH
Confidence 4689999999999998555578999999999999999999987666655
No 109
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=46.22 E-value=10 Score=37.18 Aligned_cols=15 Identities=40% Similarity=0.718 Sum_probs=13.2
Q ss_pred ccceEEEeeCchhhh
Q 022279 4 TLTKVFIWDMDETLI 18 (300)
Q Consensus 4 ~l~rVFIWDLDETlI 18 (300)
+.+.|-|+|||+|||
T Consensus 120 ~~phVIVfDlD~TLI 134 (297)
T PF05152_consen 120 EPPHVIVFDLDSTLI 134 (297)
T ss_pred CCCcEEEEECCCccc
Confidence 457799999999999
No 110
>PLN02846 digalactosyldiacylglycerol synthase
Probab=44.94 E-value=36 Score=34.94 Aligned_cols=34 Identities=12% Similarity=0.262 Sum_probs=24.1
Q ss_pred hHHHHHHHHhCCCCcEEEEecCChhHH---HHHHHcCCc
Q 022279 225 QCFQWIKERFNNPNVQFCVIGDGWEEG---EAAQAMQWP 260 (300)
Q Consensus 225 sCFerI~~RFgg~k~~fvvIGDG~eEe---~aAk~~~~P 260 (300)
..|..|+++. +++++++||||++++ +.|+++++.
T Consensus 248 ~a~~~l~~~~--~~~~l~ivGdGp~~~~L~~~a~~l~l~ 284 (462)
T PLN02846 248 KLLHKHQKEL--SGLEVDLYGSGEDSDEVKAAAEKLELD 284 (462)
T ss_pred HHHHHHHhhC--CCeEEEEECCCccHHHHHHHHHhcCCc
Confidence 4556665555 578999999999984 456666664
No 111
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=44.49 E-value=38 Score=34.13 Aligned_cols=75 Identities=25% Similarity=0.224 Sum_probs=53.9
Q ss_pred eeEEEEcC-CcchHHHHHHHHhhcCccccc---------CccccccccChhhHHHHHHHHhCCCCcEEEEecCChh---H
Q 022279 184 HVNILVTS-GSLIPSLVKCLLFRLDNLITH---------GNVYSSWEVGKLQCFQWIKERFNNPNVQFCVIGDGWE---E 250 (300)
Q Consensus 184 ~vNVLVTs-~qLVPaLaK~LLygL~~~fpi---------eNIYSa~kvGKesCFerI~~RFgg~k~~fvvIGDG~e---E 250 (300)
.+-.|=+| -|+-|.|-|.+=++-=++-|+ .||--+.-..|-|-..-|..||+ +-+||.|||..| |
T Consensus 215 pvfYvSnSPw~~f~~L~efi~~~~~P~GPl~L~~~g~~~~~i~~sga~rK~~~l~nil~~~p--~~kfvLVGDsGE~Dpe 292 (373)
T COG4850 215 PVFYVSNSPWQLFPTLQEFITNRNFPYGPLLLRRWGGVLDNIIESGAARKGQSLRNILRRYP--DRKFVLVGDSGEHDPE 292 (373)
T ss_pred CeEEecCChhHhHHHHHHHHhcCCCCCCchhHhhcCCcccccccchhhhcccHHHHHHHhCC--CceEEEecCCCCcCHH
Confidence 34443333 289999999988773333332 67777777889999999999995 568999999865 5
Q ss_pred HHHHHHcCCc
Q 022279 251 GEAAQAMQWP 260 (300)
Q Consensus 251 e~aAk~~~~P 260 (300)
-=|+....||
T Consensus 293 IYae~v~~fP 302 (373)
T COG4850 293 IYAEMVRCFP 302 (373)
T ss_pred HHHHHHHhCc
Confidence 5555566666
No 112
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=43.88 E-value=12 Score=32.40 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=16.3
Q ss_pred eEEEeeCchhhhhHhhhhhh
Q 022279 7 KVFIWDMDETLILLKSLLNG 26 (300)
Q Consensus 7 rVFIWDLDETlIif~SLLtg 26 (300)
++.|||||.||+=......-
T Consensus 3 ~~viFDlDGTL~ds~~~~~~ 22 (221)
T TIGR02253 3 KAIFFDLDDTLIDTSGLAEK 22 (221)
T ss_pred eEEEEeCCCCCcCCCCccCH
Confidence 57899999999988776544
No 113
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=43.19 E-value=13 Score=35.38 Aligned_cols=14 Identities=43% Similarity=0.627 Sum_probs=12.3
Q ss_pred cceEEEeeCchhhh
Q 022279 5 LTKVFIWDMDETLI 18 (300)
Q Consensus 5 l~rVFIWDLDETlI 18 (300)
..+++|||||.||.
T Consensus 2 ~~k~~v~DlDnTlw 15 (320)
T TIGR01686 2 ALKVLVLDLDNTLW 15 (320)
T ss_pred CeEEEEEcCCCCCC
Confidence 56899999999994
No 114
>PRK07478 short chain dehydrogenase; Provisional
Probab=42.87 E-value=2.1e+02 Score=25.02 Aligned_cols=41 Identities=10% Similarity=0.171 Sum_probs=33.1
Q ss_pred cccCccccccccChhhHHHHHHHHhCCCCcEEEEecCChhH
Q 022279 210 ITHGNVYSSWEVGKLQCFQWIKERFNNPNVQFCVIGDGWEE 250 (300)
Q Consensus 210 fpieNIYSa~kvGKesCFerI~~RFgg~k~~fvvIGDG~eE 250 (300)
.|--..|+++|.+=+.-.+-+...++.++++..+|--|.=.
T Consensus 151 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~ 191 (254)
T PRK07478 151 FPGMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTD 191 (254)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCccc
Confidence 34557899999998888888889997667999988877643
No 115
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=41.95 E-value=17 Score=29.20 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=22.2
Q ss_pred ccceEEEeeCchhhhhHhhhhhhhhhhh
Q 022279 4 TLTKVFIWDMDETLILLKSLLNGTFAQS 31 (300)
Q Consensus 4 ~l~rVFIWDLDETlIif~SLLtg~yA~~ 31 (300)
+-.|++.|++||-++.+-.+.-|-..+.
T Consensus 11 ~p~~il~~~~De~~~~~~~~~~gi~~~~ 38 (95)
T PF07178_consen 11 DPPRILFWPMDEFIPALILFVIGILSGH 38 (95)
T ss_pred CcceeeeecHHHHHHHHHHHHHHHHHhh
Confidence 4579999999999998888777755443
No 116
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=41.76 E-value=12 Score=33.65 Aligned_cols=14 Identities=36% Similarity=0.499 Sum_probs=12.2
Q ss_pred ceEEEeeCchhhhh
Q 022279 6 TKVFIWDMDETLIL 19 (300)
Q Consensus 6 ~rVFIWDLDETlIi 19 (300)
-+++|||||.||+=
T Consensus 10 ~k~vIFDlDGTL~d 23 (224)
T PRK14988 10 VDTVLLDMDGTLLD 23 (224)
T ss_pred CCEEEEcCCCCccc
Confidence 36799999999987
No 117
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=41.03 E-value=11 Score=31.49 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=10.9
Q ss_pred EEEeeCchhhhhHhhh
Q 022279 8 VFIWDMDETLILLKSL 23 (300)
Q Consensus 8 VFIWDLDETlIif~SL 23 (300)
.-|+|||||||-....
T Consensus 2 ~LVlDLD~TLv~~~~~ 17 (159)
T PF03031_consen 2 TLVLDLDGTLVHSSSK 17 (159)
T ss_dssp EEEEE-CTTTEEEESS
T ss_pred EEEEeCCCcEEEEeec
Confidence 4689999998765543
No 118
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=40.89 E-value=1.2e+02 Score=29.80 Aligned_cols=113 Identities=8% Similarity=0.031 Sum_probs=69.0
Q ss_pred ccccChHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhcCCcccccccccccccccccCCceeEEEEcCCcchHHHHHHH
Q 022279 123 QNIFDKEMLRVWDELYDMTDEYTDRWLSSARVLLEQCSSGKEVSTSSLGLASLDSADTKSEHVNILVTSGSLIPSLVKCL 202 (300)
Q Consensus 123 ~~ll~~~~~~~w~~L~~~~d~~Td~WLs~A~k~L~~i~~~~~~~~~~~~~~~~~~~~sr~~~vNVLVTs~qLVPaLaK~L 202 (300)
+|+-...-.+.+.+++. |.+..-.+++.++... .+.-.++|.+|..||-+|=.|
T Consensus 58 gg~~~~~~~~~~~~~~~-------gl~~~~~~~~~~~~~~-------------------~~~p~~v~~~Gg~v~~~aA~~ 111 (396)
T TIGR03492 58 GGFSYQSLRGLLRDLRA-------GLVGLTLGQWRALRKW-------------------AKKGDLIVAVGDIVPLLFAWL 111 (396)
T ss_pred CCccCCCHHHHHHHHHh-------hHHHHHHHHHHHHHHH-------------------hhcCCEEEEECcHHHHHHHHH
Confidence 34433333445555555 5556666666666532 124568888899998877755
Q ss_pred HhhcCccc---ccCccc--cccccChhhHHHHH--H-------HHhCCCCcEEEEecCChhHHHHHHHcCCceEE
Q 022279 203 LFRLDNLI---THGNVY--SSWEVGKLQCFQWI--K-------ERFNNPNVQFCVIGDGWEEGEAAQAMQWPFVK 263 (300)
Q Consensus 203 LygL~~~f---pieNIY--Sa~kvGKesCFerI--~-------~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFwr 263 (300)
+ |.--+| +--|.| |-.-.+..+|+++. . -|.-.+.|..|.++|..+++ --++.|.+..-
T Consensus 112 ~-~~p~~~~~~~esn~~~~~~~~~~~~~~~~~~~G~~~~p~e~n~l~~~~a~~v~~~~~~t~~-~l~~~g~k~~~ 184 (396)
T TIGR03492 112 S-GKPYAFVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLPWERWLMRSRRCLAVFVRDRLTAR-DLRRQGVRASY 184 (396)
T ss_pred c-CCCceEEEeeccceeecCCCCCccchhhhccCCCccCHHHHHHhhchhhCEEeCCCHHHHH-HHHHCCCeEEE
Confidence 4 888888 778888 33333455555555 2 35555678999999955444 34555565443
No 119
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=39.90 E-value=38 Score=34.70 Aligned_cols=41 Identities=29% Similarity=0.370 Sum_probs=28.8
Q ss_pred HHHHHHHHhCCCCcEEEEecCCh-----hHHHHHHHcCCceEEeecCC
Q 022279 226 CFQWIKERFNNPNVQFCVIGDGW-----EEGEAAQAMQWPFVKIDLGP 268 (300)
Q Consensus 226 CFerI~~RFgg~k~~fvvIGDG~-----eEe~aAk~~~~PFwrI~s~~ 268 (300)
...++.+++ |+++|+++|||+ ||-.---.+++|..-+.+-+
T Consensus 216 iIp~vc~~~--p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~ 261 (426)
T KOG1111|consen 216 IIPSVCDKH--PEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVP 261 (426)
T ss_pred HHHHHHhcC--CCeeEEEecCCcccchHHHHHHHhhccCceEEecccc
Confidence 455667776 899999999999 33333345788877666544
No 120
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=39.60 E-value=31 Score=33.53 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=34.0
Q ss_pred hcCcccccCcccccc-ccChhhHHHHHHHHhCCCCcEEEEecCCh
Q 022279 205 RLDNLITHGNVYSSW-EVGKLQCFQWIKERFNNPNVQFCVIGDGW 248 (300)
Q Consensus 205 gL~~~fpieNIYSa~-kvGKesCFerI~~RFgg~k~~fvvIGDG~ 248 (300)
.|-++.||+-|---- .|-+.+|-|.|++.|||-|..+ ||.||.
T Consensus 81 DLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdl-VvcDGA 124 (294)
T KOG1099|consen 81 DLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADL-VVCDGA 124 (294)
T ss_pred ecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccE-EEeCCC
Confidence 577899999886543 3779999999999999877665 556774
No 121
>PF08411 Exonuc_X-T_C: Exonuclease C-terminal; InterPro: IPR013620 This bacterial domain is found at the C terminus of exodeoxyribonuclease I/Exonuclease I (IPR013520 from INTERPRO), which is a single-strand specific DNA nuclease affecting recombination and expression pathways. The exonuclease I protein in Escherichia coli is associated with DNA deoxyribophosphodiesterase (dRPase) []. ; GO: 0008852 exodeoxyribonuclease I activity, 0006281 DNA repair; PDB: 2QXF_A 3C94_A 3HL8_A 3C95_A 1FXX_A 3HP9_A.
Probab=39.59 E-value=57 Score=30.96 Aligned_cols=45 Identities=20% Similarity=0.423 Sum_probs=25.6
Q ss_pred hhhhHHHHHHHHHHHHHhcCcccccChHHHHHHHHHH-hhhhhhhhhHHHHH
Q 022279 102 LSLKKIAYRHRAIAHKYKEGLQNIFDKEMLRVWDELY-DMTDEYTDRWLSSA 152 (300)
Q Consensus 102 ~nmRKLA~ryR~I~e~Y~~~l~~ll~~~~~~~w~~L~-~~~d~~Td~WLs~A 152 (300)
.-++.|+||||+ .|....|+.++++.|.+-+ .-+-.-.++|++..
T Consensus 191 ~RL~eLlfRyra------RN~P~tL~~~E~~~W~~~~~~rL~~~~~~~~tl~ 236 (269)
T PF08411_consen 191 PRLPELLFRYRA------RNFPETLSEEEQQRWQEYCQQRLTDPDGGWLTLE 236 (269)
T ss_dssp THHHHHHHHHHH------HH-GGG--HHHHHHHHHHHHHHS-HHH-----HH
T ss_pred hhHHHHHHHHHH------hcChhhCCHHHHHHHHHHHHHHccCCccchHHHH
Confidence 335778888883 5678899999999999865 33333337887765
No 122
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=39.50 E-value=81 Score=31.99 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=16.8
Q ss_pred EecCChhHHHHHHHcCCceEEeecC
Q 022279 243 VIGDGWEEGEAAQAMQWPFVKIDLG 267 (300)
Q Consensus 243 vIGDG~eEe~aAk~~~~PFwrI~s~ 267 (300)
+||...+ ..+|++++.||++++..
T Consensus 385 iig~s~~-~~~A~~~gip~~~~g~P 408 (454)
T cd01973 385 ILGHSKG-RYIAIDNNIPMVRVGFP 408 (454)
T ss_pred EEECCcc-HHHHHHcCCCEEEecCC
Confidence 3454433 45688899999999754
No 123
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=38.51 E-value=15 Score=31.96 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=18.0
Q ss_pred eEEEeeCchhhhhHhhhhhhhhhhh
Q 022279 7 KVFIWDMDETLILLKSLLNGTFAQS 31 (300)
Q Consensus 7 rVFIWDLDETlIif~SLLtg~yA~~ 31 (300)
+..|||+|.|||=...+..-.|.+.
T Consensus 5 ~~viFD~DGTL~d~~~~~~~a~~~~ 29 (221)
T PRK10563 5 EAVFFDCDGTLVDSEVICSRAYVTM 29 (221)
T ss_pred CEEEECCCCCCCCChHHHHHHHHHH
Confidence 5779999999998766654444433
No 124
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=38.46 E-value=58 Score=29.50 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=37.4
Q ss_pred ccChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHc-------CCceEEee
Q 022279 220 EVGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAM-------QWPFVKID 265 (300)
Q Consensus 220 kvGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~-------~~PFwrI~ 265 (300)
.+.|-...++|.++++.+...=++|||+..-+.+++.. +...+.+.
T Consensus 165 ~~~Kg~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~ 217 (244)
T TIGR00685 165 FVNKGEIVKRLLWHQPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIG 217 (244)
T ss_pred CCCHHHHHHHHHHhcccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEe
Confidence 56899999999999986656669999999888888887 45566664
No 125
>COG5439 Uncharacterized conserved protein [Function unknown]
Probab=38.40 E-value=26 Score=29.70 Aligned_cols=40 Identities=28% Similarity=0.403 Sum_probs=32.5
Q ss_pred HHHHhCCCCcEEEEecCChhHHHHHHHcCCceEEeecCCCCCCCCCCCcccc
Q 022279 230 IKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFVKIDLGPGSCHRFPGLSLRT 281 (300)
Q Consensus 230 I~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFwrI~s~~d~~~~~p~l~~~~ 281 (300)
|.-|- .|+++|||=|.. ++| |...|.|.+.++-|+|+|.-
T Consensus 72 ievRk-~pd~~fvvrGs~----------~ip-WQ~KSLpNLkkLhP~l~L~~ 111 (112)
T COG5439 72 IEVRK-KPDTSFVVRGSK----------NIP-WQMKSLPNLKKLHPDLTLEF 111 (112)
T ss_pred hhhhc-CCCceEEEecCC----------CCc-chhccccchHhhCCCceEee
Confidence 44454 589999999864 566 89999999999999999864
No 126
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=37.42 E-value=57 Score=31.21 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=35.3
Q ss_pred ChhhHHHHHHHHhCCCC--cE-EEEecCChhHHHHHHHcCCceEEeecC
Q 022279 222 GKLQCFQWIKERFNNPN--VQ-FCVIGDGWEEGEAAQAMQWPFVKIDLG 267 (300)
Q Consensus 222 GKesCFerI~~RFgg~k--~~-fvvIGDG~eEe~aAk~~~~PFwrI~s~ 267 (300)
|.-+||+-|..+.-... +. =+||++..+=..-|+++|+|+..+...
T Consensus 93 g~g~nl~~l~~~~~~g~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~~ 141 (280)
T TIGR00655 93 KEDHCLGDLLWRWYSGELDAEIALVISNHEDLRSLVERFGIPFHYIPAT 141 (280)
T ss_pred CCChhHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEcCCC
Confidence 45599999999884332 33 457788888777899999999998753
No 127
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=37.01 E-value=36 Score=26.63 Aligned_cols=23 Identities=30% Similarity=0.784 Sum_probs=19.5
Q ss_pred HHHHHHHHhCCCCcEEEEecCChhH
Q 022279 226 CFQWIKERFNNPNVQFCVIGDGWEE 250 (300)
Q Consensus 226 CFerI~~RFgg~k~~fvvIGDG~eE 250 (300)
+++++++++ |+++++++|.+.++
T Consensus 24 ~~~~l~~~~--p~~~l~i~G~~~~~ 46 (135)
T PF13692_consen 24 ALERLKEKH--PDIELIIIGNGPDE 46 (135)
T ss_dssp HHHHHHHHS--TTEEEEEECESS-H
T ss_pred HHHHHHHHC--cCEEEEEEeCCHHH
Confidence 788899998 78999999999883
No 128
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=36.77 E-value=4.5e+02 Score=26.31 Aligned_cols=72 Identities=14% Similarity=0.224 Sum_probs=42.8
Q ss_pred EEEcCCcchHHHHHHHHhhcCcccccCccccccc-------------cChhhHHHHHHHHhCCCCcEEEEecCChhHHHH
Q 022279 187 ILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWE-------------VGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEA 253 (300)
Q Consensus 187 VLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~k-------------vGKesCFerI~~RFgg~k~~fvvIGDG~eEe~a 253 (300)
.+++.+.++-+++++|. .||--... +.+..+ ++-.+-+| ++-. + .=++||+.++-. .
T Consensus 304 ai~~~~~~~~~l~~~L~-ElG~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~e---~~~~--~-~dllig~s~~~~-~ 373 (417)
T cd01966 304 AIALEPDLLAALSSFLA-EMGAEIVA--AVATTDSPALEKLPAEEVVVGDLEDLE---DLAA--E-ADLLVTNSHGRQ-A 373 (417)
T ss_pred EEEeCHHHHHHHHHHHH-HCCCEEEE--EEECCCCHHHHhCcccceEeCCHHHHH---Hhcc--c-CCEEEEcchhHH-H
Confidence 55566678999999998 88654433 111111 12222233 2321 2 335667666555 7
Q ss_pred HHHcCCceEEeecCC
Q 022279 254 AQAMQWPFVKIDLGP 268 (300)
Q Consensus 254 Ak~~~~PFwrI~s~~ 268 (300)
|+++|.||+++....
T Consensus 374 A~~~~ip~~~~g~Pi 388 (417)
T cd01966 374 AERLGIPLLRAGFPI 388 (417)
T ss_pred HHhcCCCEEEecCCc
Confidence 889999999987653
No 129
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=36.71 E-value=71 Score=23.33 Aligned_cols=56 Identities=7% Similarity=0.079 Sum_probs=32.6
Q ss_pred hHHHHHHHHhCCCCcEEEEecCChh-HHH---HHHHc--CCceEEeecCCCCCCCCCCCcccc
Q 022279 225 QCFQWIKERFNNPNVQFCVIGDGWE-EGE---AAQAM--QWPFVKIDLGPGSCHRFPGLSLRT 281 (300)
Q Consensus 225 sCFerI~~RFgg~k~~fvvIGDG~e-Ee~---aAk~~--~~PFwrI~s~~d~~~~~p~l~~~~ 281 (300)
.=+..+.++|+.+++.++.|.-..+ +++ .++++ +||++.-. ...+...|.....++
T Consensus 39 ~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~P~ 100 (116)
T cd02966 39 PELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDP-DGELAKAYGVRGLPT 100 (116)
T ss_pred HHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcC-cchHHHhcCcCccce
Confidence 4467788889767899999877653 222 22333 45544422 344566665555444
No 130
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=36.27 E-value=17 Score=30.88 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=13.3
Q ss_pred EEEeeCchhhhhHhhhhh
Q 022279 8 VFIWDMDETLILLKSLLN 25 (300)
Q Consensus 8 VFIWDLDETlIif~SLLt 25 (300)
++|||||.||+=....+.
T Consensus 2 ~viFDlDGTL~ds~~~~~ 19 (184)
T TIGR01993 2 VWFFDLDNTLYPHSAGIF 19 (184)
T ss_pred eEEEeCCCCCCCCcccHH
Confidence 689999999995543333
No 131
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=35.44 E-value=56 Score=30.83 Aligned_cols=79 Identities=18% Similarity=0.202 Sum_probs=62.8
Q ss_pred eeEEEEcCCcchHHHHHHHHhhcCcccccCccccc---cccC-hh--hHHHHHHHHhCCCCcEEEEecCChhHHHHHHHc
Q 022279 184 HVNILVTSGSLIPSLVKCLLFRLDNLITHGNVYSS---WEVG-KL--QCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAM 257 (300)
Q Consensus 184 ~vNVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa---~kvG-Ke--sCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~ 257 (300)
.+-|-|=|..=|| |+=|+||-...=.+.|.+|- |++| |- +-+.+|..--|-+...-+.+.|-.+|-.||+..
T Consensus 119 g~~vyiYSSGSV~--AQkL~Fghs~agdL~~lfsGyfDttiG~KrE~~SY~kIa~~iGl~p~eilFLSDn~~EL~AA~~v 196 (229)
T COG4229 119 GMRVYIYSSGSVK--AQKLFFGHSDAGDLNSLFSGYFDTTIGKKRESQSYAKIAGDIGLPPAEILFLSDNPEELKAAAGV 196 (229)
T ss_pred CCcEEEEcCCCch--hHHHhhcccccccHHhhhcceeeccccccccchhHHHHHHhcCCCchheEEecCCHHHHHHHHhc
Confidence 4455555555566 57899999888888888775 5677 33 569999999998888999999999999999999
Q ss_pred CCceEEe
Q 022279 258 QWPFVKI 264 (300)
Q Consensus 258 ~~PFwrI 264 (300)
+|--.-+
T Consensus 197 Gl~t~l~ 203 (229)
T COG4229 197 GLATGLA 203 (229)
T ss_pred chheeee
Confidence 9876544
No 132
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=35.29 E-value=48 Score=28.45 Aligned_cols=50 Identities=22% Similarity=0.143 Sum_probs=31.9
Q ss_pred HHHHHHHhC-CCCcEEEEecCChhHHHH-HHHcCCceEEeecCCCCCCCCCCCc
Q 022279 227 FQWIKERFN-NPNVQFCVIGDGWEEGEA-AQAMQWPFVKIDLGPGSCHRFPGLS 278 (300)
Q Consensus 227 FerI~~RFg-g~k~~fvvIGDG~eEe~a-Ak~~~~PFwrI~s~~d~~~~~p~l~ 278 (300)
.+|+.++.| ....++|||.+..+.-.. |+..++|.+.+. +++.-||..|+
T Consensus 97 ~~~l~~~~~~~~~~~~vaiT~~~s~l~~~a~~~~~~~~~~~--~~vggR~S~Ls 148 (158)
T cd05015 97 REWLEEAGGDDLAKHFVAITDNGSGLLKKAGIEGLNTFEIP--DWVGGRFSVLS 148 (158)
T ss_pred HHHHHHhccccccceEEEEcCCChHHHHHcCCCcceeeeCC--CCCCchHHHHh
Confidence 344444432 155799999997776555 778888887754 33456666554
No 133
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=35.27 E-value=1.2e+02 Score=27.94 Aligned_cols=73 Identities=18% Similarity=0.359 Sum_probs=43.5
Q ss_pred EEEEcCCcchHHHHHHHHhhcCcccccCcccccccc-------------------------C-hhhHHHHHHHHhCC-CC
Q 022279 186 NILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEV-------------------------G-KLQCFQWIKERFNN-PN 238 (300)
Q Consensus 186 NVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kv-------------------------G-KesCFerI~~RFgg-~k 238 (300)
.++++.|+-.|++--+|. +-++||.+++-+-.+. | =..+--.+..|+.+ .+
T Consensus 51 ~~v~s~gH~~~~~ya~l~--~~g~~~~~~l~~~~~~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~~~~ 128 (255)
T cd02012 51 RFVLSKGHASPALYAVLA--LAGYLPEEDLKTFRQLGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLGFDY 128 (255)
T ss_pred eEEEcCCcHHHHHHHHHH--HcCCCCHHHHHHhcccCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhCCCC
Confidence 488899999999766654 4445544333211111 1 01122234444322 45
Q ss_pred cEEEEecCC-------hhHHHHHHHcCCc
Q 022279 239 VQFCVIGDG-------WEEGEAAQAMQWP 260 (300)
Q Consensus 239 ~~fvvIGDG-------~eEe~aAk~~~~P 260 (300)
-+||++||| +||-..|..++.|
T Consensus 129 ~v~~i~GDG~~~~G~~~eal~~a~~~~l~ 157 (255)
T cd02012 129 RVYVLLGDGELQEGSVWEAASFAGHYKLD 157 (255)
T ss_pred EEEEEECcccccccHHHHHHHHHHHcCCC
Confidence 799999998 5666788888987
No 134
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=35.21 E-value=56 Score=36.69 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=39.1
Q ss_pred hhHHHHHHHHh----C-CCCcEEEEecC-ChhHHHHHHHcCCceEEeecCCCCCCCCCCCc
Q 022279 224 LQCFQWIKERF----N-NPNVQFCVIGD-GWEEGEAAQAMQWPFVKIDLGPGSCHRFPGLS 278 (300)
Q Consensus 224 esCFerI~~RF----g-g~k~~fvvIGD-G~eEe~aAk~~~~PFwrI~s~~d~~~~~p~l~ 278 (300)
.++|+++++.+ | .++.++|+|.| |..=++.|+++|+|.+- ...|+..=||..||
T Consensus 524 ~sa~~~~~~~l~~~~g~~~~~~~VaVTdpgs~L~~~A~~~G~~~vf-~~~p~VGGRYSVLS 583 (948)
T PRK09533 524 NIFKDYFFARVKEVLGAKAGRHFVAVTDPGSSLEKVAKEDGFRKIF-HGDPDIGGRYSVLS 583 (948)
T ss_pred HHHHHHHHHHhhhhcccccCCeEEEEeCCCChHHHHHHHcCCeeEe-cCCCCCCcchHHhh
Confidence 46888887766 3 24678999998 54566679999998322 44588888988654
No 135
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=35.05 E-value=1.1e+02 Score=31.32 Aligned_cols=89 Identities=18% Similarity=0.184 Sum_probs=47.9
Q ss_pred EEEcCCcchHHHHHHHHhhcCcccccCcccccccc------ChhhH--------HHHHHHHhCCCCcEEEEecCChhHHH
Q 022279 187 ILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEV------GKLQC--------FQWIKERFNNPNVQFCVIGDGWEEGE 252 (300)
Q Consensus 187 VLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kv------GKesC--------FerI~~RFgg~k~~fvvIGDG~eEe~ 252 (300)
+++.....+-+++|.|.=.||--+-.-..|+.... -|..| ++.|.++-. +.--=++||+. -|+.
T Consensus 299 ~I~gd~~~a~~l~~~L~~ElG~~vv~~gt~~~~~~~~~~~~~~~~~~~~~i~dD~~ei~~~i~-~~~pdliiG~~-~er~ 376 (511)
T TIGR01278 299 FVFGDATHAVGMTKILARELGIHIVGAGTYCKYDADWVREQVAGYVDEVLITDDFQEVADAIA-ALEPELVLGTQ-MERH 376 (511)
T ss_pred EEEcCcHHHHHHHHHHHHhCCCEEEecCCchhhhHHHHHHHHHhcCCCeEEeCCHHHHHHHHH-hcCCCEEEECh-HHHH
Confidence 56667789999999998555543322222322000 00000 223332221 11122677777 5566
Q ss_pred HHHHcCCceEEeecCCCCCCCCCCCc
Q 022279 253 AAQAMQWPFVKIDLGPGSCHRFPGLS 278 (300)
Q Consensus 253 aAk~~~~PFwrI~s~~d~~~~~p~l~ 278 (300)
.|++++.|+.+|+. |--..++|...
T Consensus 377 ~a~~lgip~~~i~~-Pv~~~~~~~~~ 401 (511)
T TIGR01278 377 SAKRLDIPCGVISA-PTHIQNFPLGY 401 (511)
T ss_pred HHHHcCCCEEEecC-cchhhcccccC
Confidence 79999999999988 43333444443
No 136
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=34.80 E-value=49 Score=29.40 Aligned_cols=49 Identities=20% Similarity=0.271 Sum_probs=38.5
Q ss_pred ccChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCceEEeecCC
Q 022279 220 EVGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFVKIDLGP 268 (300)
Q Consensus 220 kvGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFwrI~s~~ 268 (300)
.++|..-.+++.+|+|-+.-.-++|||+.--.++.+..+.+|.-=+..+
T Consensus 157 ~~~K~~al~~l~~~~g~~~~~~i~~GD~~nD~~ml~~~~~~iav~na~~ 205 (236)
T TIGR02471 157 RASKGLALRYLSYRWGLPLEQILVAGDSGNDEEMLRGLTLGVVVGNHDP 205 (236)
T ss_pred CCChHHHHHHHHHHhCCCHHHEEEEcCCccHHHHHcCCCcEEEEcCCcH
Confidence 4689999999999998554567899999988888888888875433333
No 137
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=34.72 E-value=77 Score=28.52 Aligned_cols=23 Identities=30% Similarity=0.257 Sum_probs=10.6
Q ss_pred cCccccccccChhhHHHHHHHHhC
Q 022279 212 HGNVYSSWEVGKLQCFQWIKERFN 235 (300)
Q Consensus 212 ieNIYSa~kvGKesCFerI~~RFg 235 (300)
.+.|+++..+.. ..+.++.+++|
T Consensus 70 ~~~Ii~s~~~~~-~~l~~~~~~~~ 92 (242)
T TIGR01459 70 PEMIISSGEIAV-QMILESKKRFD 92 (242)
T ss_pred cceEEccHHHHH-HHHHhhhhhcc
Confidence 355666554333 24444444443
No 138
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=34.48 E-value=57 Score=28.15 Aligned_cols=68 Identities=22% Similarity=0.246 Sum_probs=49.5
Q ss_pred EEEEcCCcchHHHHHHHHhhcCcccccCccccccccChhhHHHHHHHHhCCCCcEEE-EecCChhHHHHHHHcCCceEEe
Q 022279 186 NILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVGKLQCFQWIKERFNNPNVQFC-VIGDGWEEGEAAQAMQWPFVKI 264 (300)
Q Consensus 186 NVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvGKesCFerI~~RFgg~k~~fv-vIGDG~eEe~aAk~~~~PFwrI 264 (300)
-|+..++.+++++- -|-++.....=|..|.++|++.|...+..|+ ++|++..--+|=++.++|=-||
T Consensus 78 ~li~~~g~~~~~~~------------~e~i~~~~~~~K~~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~~~~i 145 (157)
T smart00775 78 PVLLSPDRLFAALH------------REVISKKPEVFKIACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIPPSRI 145 (157)
T ss_pred eEEEcCCcchhhhh------------cccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCChhhE
Confidence 45667777776432 2344554444599999999999953456666 5999999999999999997766
Q ss_pred e
Q 022279 265 D 265 (300)
Q Consensus 265 ~ 265 (300)
=
T Consensus 146 ~ 146 (157)
T smart00775 146 F 146 (157)
T ss_pred E
Confidence 3
No 139
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=34.43 E-value=46 Score=32.04 Aligned_cols=46 Identities=15% Similarity=0.207 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHhCCC--Cc-EEEEecCChhHHHHHHHcCCceEEeecCC
Q 022279 223 KLQCFQWIKERFNNP--NV-QFCVIGDGWEEGEAAQAMQWPFVKIDLGP 268 (300)
Q Consensus 223 KesCFerI~~RFgg~--k~-~fvvIGDG~eEe~aAk~~~~PFwrI~s~~ 268 (300)
.-+||+-|..+.-.. ++ -=+||++..+=.+-|+++|+|+..++..+
T Consensus 103 ~g~nl~al~~~~~~~~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~~~ 151 (289)
T PRK13010 103 FDHCLNDLLYRWRMGELDMDIVGIISNHPDLQPLAVQHDIPFHHLPVTP 151 (289)
T ss_pred CCccHHHHHHHHHCCCCCcEEEEEEECChhHHHHHHHcCCCEEEeCCCc
Confidence 349999999987422 23 44678888888899999999999887554
No 140
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=33.89 E-value=52 Score=31.24 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=20.2
Q ss_pred hHHHHHHHHhCCCCcEEEEecCChhHH
Q 022279 225 QCFQWIKERFNNPNVQFCVIGDGWEEG 251 (300)
Q Consensus 225 sCFerI~~RFgg~k~~fvvIGDG~eEe 251 (300)
.+|..|+++. +++++++||+|.+++
T Consensus 248 ~~~~~l~~~~--p~~~l~ivG~g~~~~ 272 (397)
T TIGR03087 248 RVFPAVRARR--PAAEFYIVGAKPSPA 272 (397)
T ss_pred HHHHHHHHHC--CCcEEEEECCCChHH
Confidence 4677777776 789999999998764
No 141
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=32.90 E-value=75 Score=26.93 Aligned_cols=55 Identities=15% Similarity=0.063 Sum_probs=34.6
Q ss_pred cccCccccccccChhhHHHHHHHHhCCCCcEEEEec-----CChhHHHHH------HH----cCCceEEeecC
Q 022279 210 ITHGNVYSSWEVGKLQCFQWIKERFNNPNVQFCVIG-----DGWEEGEAA------QA----MQWPFVKIDLG 267 (300)
Q Consensus 210 fpieNIYSa~kvGKesCFerI~~RFgg~k~~fvvIG-----DG~eEe~aA------k~----~~~PFwrI~s~ 267 (300)
.|++.+.......-..-++.|.+.++ +.-+||| ||.+-++|. ++ .+.|++-++=+
T Consensus 23 ~pl~~i~~~~~~~~~~~l~~~i~~~~---~~~iVvGlP~~~dG~~~~~a~~v~~f~~~L~~~~~~~v~~~DEr 92 (130)
T TIGR00250 23 QGIPTIKAQDGEPDWSRIEELLKEWT---PDKIVVGLPLNMDGTEGPLTERAQKFANRLEGRFGVPVVLWDER 92 (130)
T ss_pred eceEEEEecCCcHHHHHHHHHHHHcC---CCEEEEeccCCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 35555544322223456667777775 6789999 999888433 33 37787776543
No 142
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=32.85 E-value=31 Score=30.05 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=20.5
Q ss_pred EEecCChhHHHHHHHcCCceEEeecCC
Q 022279 242 CVIGDGWEEGEAAQAMQWPFVKIDLGP 268 (300)
Q Consensus 242 vvIGDG~eEe~aAk~~~~PFwrI~s~~ 268 (300)
|+||++.- ++.|+++|+|.+.|.+..
T Consensus 128 viVGg~~~-~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 128 VIVGGGVV-CRLARKLGLPGVLIESGE 153 (176)
T ss_dssp EEEESHHH-HHHHHHTTSEEEESS--H
T ss_pred EEECCHHH-HHHHHHcCCcEEEEEecH
Confidence 78898876 678999999999998744
No 143
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=31.71 E-value=7.7e+02 Score=27.57 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=46.6
Q ss_pred EEEcCCcchHHHHHHHHhhcCccccc--Cccccc---------cccChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHH
Q 022279 187 ILVTSGSLIPSLVKCLLFRLDNLITH--GNVYSS---------WEVGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQ 255 (300)
Q Consensus 187 VLVTs~qLVPaLaK~LLygL~~~fpi--eNIYSa---------~kvGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk 255 (300)
.+.+-+.++-+++++|. .||--+.. -+.++. ..+|-.+-||. +..++. ++||.+++ ..+|+
T Consensus 791 ai~~~~d~~~~l~~~l~-elG~~v~~~~~~~~~~~~~~l~~~~v~v~D~~~~e~---~~~~~d---llig~s~~-~~~A~ 862 (917)
T PRK14477 791 ALALEPDLLKALTSFLA-GMGCEIQAAVAATRSRGLDRLPAENVFVGDLEDLET---AAAGAD---LLVANSNG-RQAAA 862 (917)
T ss_pred EEEeChHHHHHHHHHHH-HcCCeEEEEEeCCChHHHHhCCcCcEEeCCHHHHHh---hccCCC---EEEECchH-HHHHH
Confidence 56667788888999888 88875443 111110 01233445555 222232 56788766 66899
Q ss_pred HcCC-ceEEeecCC
Q 022279 256 AMQW-PFVKIDLGP 268 (300)
Q Consensus 256 ~~~~-PFwrI~s~~ 268 (300)
+++. ||+|+..+.
T Consensus 863 ~l~i~p~~r~g~Pi 876 (917)
T PRK14477 863 RLGIKAHLRAGLPV 876 (917)
T ss_pred HcCCCceEEecCCc
Confidence 9999 999988775
No 144
>PRK11590 hypothetical protein; Provisional
Probab=31.16 E-value=29 Score=30.68 Aligned_cols=14 Identities=36% Similarity=0.560 Sum_probs=12.6
Q ss_pred cceEEEeeCchhhh
Q 022279 5 LTKVFIWDMDETLI 18 (300)
Q Consensus 5 l~rVFIWDLDETlI 18 (300)
-.++.|+|+|.||+
T Consensus 5 ~~k~~iFD~DGTL~ 18 (211)
T PRK11590 5 ERRVVFFDLDGTLH 18 (211)
T ss_pred cceEEEEecCCCCc
Confidence 46789999999999
No 145
>PF08812 YtxC: YtxC-like family; InterPro: IPR014199 This uncharacterised protein is one of a number of proteins conserved in all known endospore-forming Firmicutes (low-GC Gram-positive bacteria), including Carboxydothermus hydrogenoformans, and it is not found in non-endospore forming species. It is uniformly distributed in the mother cell cytoplasm in Bacillus subtilis [].
Probab=30.83 E-value=3.5e+02 Score=25.00 Aligned_cols=123 Identities=17% Similarity=0.194 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhhhhhhchhhhhhcCccccccccccCCCCCCCCCccCCCCCCCCCC-chhhhHHHHHHHHHHHHHhc--
Q 022279 44 IGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYDDGRDLSDYEFDRDGLCPPFD-DLSLKKIAYRHRAIAHKYKE-- 120 (300)
Q Consensus 44 LG~~mE~~If~l~D~hfFfndlee~d~~~iddv~~dDnG~DLs~y~F~~dgf~~p~~-~~nmRKLA~ryR~I~e~Y~~-- 120 (300)
+....++++..+..+.|||-+-||..+..=-..+--+++.. ..|.. ...+++-+.-+++|.+--.+
T Consensus 14 i~~~e~~~i~~ii~~~Y~~~~~eE~~~I~~~~~~iL~~~~~-----------~~~~~~~~~~~rk~~I~~~i~~~l~~~~ 82 (221)
T PF08812_consen 14 IEEKEKKLIRKIIEENYFYFDEEEQQQILEIAHEILNGERK-----------DLPEDSIYRINRKNEIIEKILEYLEENS 82 (221)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCcc-----------ccchhcchhhhHHHHHHHHHHHHHhcCC
Confidence 44456677777766666665566655443222222222111 00000 11233335555555554433
Q ss_pred --CcccccChHHHHHHHHHHhhhhhhhhhHHHHH-----HHHHHHhhcCCcccccccccccccccccCCceeEEEEcCC
Q 022279 121 --GLQNIFDKEMLRVWDELYDMTDEYTDRWLSSA-----RVLLEQCSSGKEVSTSSLGLASLDSADTKSEHVNILVTSG 192 (300)
Q Consensus 121 --~l~~ll~~~~~~~w~~L~~~~d~~Td~WLs~A-----~k~L~~i~~~~~~~~~~~~~~~~~~~~sr~~~vNVLVTs~ 192 (300)
++.|++.=.-++-+.+|...+|..-|-++.-= -++|.-.... ..++-..|||+++.+
T Consensus 83 ~i~idGFi~FRLk~y~~~l~~~ve~aVdEy~~EkEY~eFI~lLryFV~~---------------Qe~ki~~vhvv~~~~ 146 (221)
T PF08812_consen 83 EINIDGFITFRLKDYREELEEIVEKAVDEYLMEKEYQEFIQLLRYFVDI---------------QEPKIELVHVVIDED 146 (221)
T ss_pred EEeehhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------cCcCceEEEEEEeCC
Confidence 78899988888888888887888777776543 4445444321 247889999999954
No 146
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=30.62 E-value=73 Score=25.43 Aligned_cols=42 Identities=14% Similarity=0.244 Sum_probs=27.1
Q ss_pred HHHHHHHhCCCCcEEEEecCChhHHHH--HHHcCCceEEeecCCC
Q 022279 227 FQWIKERFNNPNVQFCVIGDGWEEGEA--AQAMQWPFVKIDLGPG 269 (300)
Q Consensus 227 FerI~~RFgg~k~~fvvIGDG~eEe~a--Ak~~~~PFwrI~s~~d 269 (300)
+.++.++|..+++..++|+-...+... ++.+++|| ++=+.++
T Consensus 46 l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~-p~~~D~~ 89 (149)
T cd02970 46 LSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPF-PVYADPD 89 (149)
T ss_pred HHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCC-eEEECCc
Confidence 566777886667888888876665543 55667765 4444443
No 147
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=30.49 E-value=71 Score=28.48 Aligned_cols=42 Identities=12% Similarity=0.001 Sum_probs=36.7
Q ss_pred ccChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCce
Q 022279 220 EVGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPF 261 (300)
Q Consensus 220 kvGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PF 261 (300)
.+.|.+..+++.+++|-+.-.-++|||+.---++++..++++
T Consensus 197 ~~~K~~~l~~l~~~~gi~~~e~i~~GD~~NDi~m~~~ag~~v 238 (272)
T PRK10530 197 GNSKGKRLTQWVEAQGWSMKNVVAFGDNFNDISMLEAAGLGV 238 (272)
T ss_pred CCChHHHHHHHHHHcCCCHHHeEEeCCChhhHHHHHhcCceE
Confidence 356999999999999855567899999999999999999876
No 148
>PTZ00225 60S ribosomal protein L10a; Provisional
Probab=30.46 E-value=56 Score=30.23 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=23.4
Q ss_pred CCcEEEEecCChhHHHHHHHcCCceEEee
Q 022279 237 PNVQFCVIGDGWEEGEAAQAMQWPFVKID 265 (300)
Q Consensus 237 ~k~~fvvIGDG~eEe~aAk~~~~PFwrI~ 265 (300)
++++-|||+||..+++ ||..|.+|+.+.
T Consensus 58 k~~kV~v~~~~~~~~~-Ak~aGad~v~~e 85 (214)
T PTZ00225 58 PRMTVCLLCDLVHEDI-AKKEGVPTMNQE 85 (214)
T ss_pred CCcEEEEECChHHHHH-HHHCCCCEECHH
Confidence 6688999999998664 899999987665
No 149
>PRK07774 short chain dehydrogenase; Provisional
Probab=30.40 E-value=1.9e+02 Score=25.00 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=30.7
Q ss_pred CccccccccChhhHHHHHHHHhCCCCcEEEEecCCh
Q 022279 213 GNVYSSWEVGKLQCFQWIKERFNNPNVQFCVIGDGW 248 (300)
Q Consensus 213 eNIYSa~kvGKesCFerI~~RFgg~k~~fvvIGDG~ 248 (300)
-+.|+++|.+-++..+.+.++++.++++.++|.-|.
T Consensus 152 ~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~ 187 (250)
T PRK07774 152 SNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGP 187 (250)
T ss_pred ccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCc
Confidence 468999999999999999999977789988886553
No 150
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=30.16 E-value=43 Score=27.13 Aligned_cols=28 Identities=14% Similarity=0.074 Sum_probs=21.9
Q ss_pred ccceEEEeeCchhhhhHhhhhhhhhhhh
Q 022279 4 TLTKVFIWDMDETLILLKSLLNGTFAQS 31 (300)
Q Consensus 4 ~l~rVFIWDLDETlIif~SLLtg~yA~~ 31 (300)
+-.|||.|++||-++++-++.-|-..+.
T Consensus 11 ~~~~i~g~t~DE~i~~~~~~~~Gi~~~~ 38 (95)
T TIGR02762 11 EQPRILGLPLDEFLPGATLFGIGILSGK 38 (95)
T ss_pred CCCeEEEeeHHHHHHHHHHHHHHHHHhh
Confidence 3478999999999888888777765543
No 151
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=29.65 E-value=1.5e+02 Score=27.12 Aligned_cols=56 Identities=20% Similarity=0.300 Sum_probs=48.1
Q ss_pred ChhhHHHHHHHHhCCCC-cEEEEecCChhHHHHHHHcCCceEEeecCCCCCCCCCCC
Q 022279 222 GKLQCFQWIKERFNNPN-VQFCVIGDGWEEGEAAQAMQWPFVKIDLGPGSCHRFPGL 277 (300)
Q Consensus 222 GKesCFerI~~RFgg~k-~~fvvIGDG~eEe~aAk~~~~PFwrI~s~~d~~~~~p~l 277 (300)
.|..-.+++.+++|-+. -.=++|||+.--.+.++..++++.-=+.++....+.+++
T Consensus 190 ~Kg~al~~l~~~~~i~~~~~v~~~GDs~NDi~m~~~ag~~vam~NA~~~~k~~~~~~ 246 (273)
T PRK00192 190 DKGKAVRWLKELYRRQDGVETIALGDSPNDLPMLEAADIAVVVPGPDGPNPPLLPGI 246 (273)
T ss_pred CHHHHHHHHHHHHhccCCceEEEEcCChhhHHHHHhCCeeEEeCCCCCCCcccCccc
Confidence 79999999999998677 788999999999999999999999888888776444444
No 152
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=29.36 E-value=95 Score=29.88 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=25.8
Q ss_pred hHHHHHHHHhCCCCcEEEEecCChhH-H---HHHHHcCCceEEe
Q 022279 225 QCFQWIKERFNNPNVQFCVIGDGWEE-G---EAAQAMQWPFVKI 264 (300)
Q Consensus 225 sCFerI~~RFgg~k~~fvvIGDG~eE-e---~aAk~~~~PFwrI 264 (300)
..|..+.+++ +++++++||+|.+. + +-++++++.++..
T Consensus 251 ~A~~~l~~~~--~~~~liivG~g~~r~~~l~~~~~~~gl~~~~~ 292 (425)
T PRK05749 251 DAHRALLKQF--PNLLLILVPRHPERFKEVEELLKKAGLSYVRR 292 (425)
T ss_pred HHHHHHHHhC--CCcEEEEcCCChhhHHHHHHHHHhCCCcEEEc
Confidence 5566666665 68999999999864 2 3345677765443
No 153
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=29.06 E-value=25 Score=31.98 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=14.0
Q ss_pred eEEEeeCchhhhhHhhh
Q 022279 7 KVFIWDMDETLILLKSL 23 (300)
Q Consensus 7 rVFIWDLDETlIif~SL 23 (300)
+..|||||.|||=+.+.
T Consensus 5 k~vIFDlDGTLiDs~~~ 21 (267)
T PRK13478 5 QAVIFDWAGTTVDFGSF 21 (267)
T ss_pred EEEEEcCCCCeecCCCc
Confidence 57899999999987543
No 154
>PRK10307 putative glycosyl transferase; Provisional
Probab=28.65 E-value=70 Score=30.41 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=18.0
Q ss_pred CCcEEEEecCChhHHH---HHHHcCCc
Q 022279 237 PNVQFCVIGDGWEEGE---AAQAMQWP 260 (300)
Q Consensus 237 ~k~~fvvIGDG~eEe~---aAk~~~~P 260 (300)
+++++++||||.++++ .++.++.+
T Consensus 258 ~~~~l~ivG~g~~~~~l~~~~~~~~l~ 284 (412)
T PRK10307 258 PDLIFVICGQGGGKARLEKMAQCRGLP 284 (412)
T ss_pred CCeEEEEECCChhHHHHHHHHHHcCCC
Confidence 5799999999986653 45666665
No 155
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=28.13 E-value=69 Score=28.82 Aligned_cols=52 Identities=17% Similarity=0.095 Sum_probs=40.3
Q ss_pred cccChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHH-cCCceEEeecCCCC
Q 022279 219 WEVGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQA-MQWPFVKIDLGPGS 270 (300)
Q Consensus 219 ~kvGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~-~~~PFwrI~s~~d~ 270 (300)
..++|.+-.+++++++|-+.-.-++|||+.--.+..+. ...++.--+.++.+
T Consensus 164 ~~~~K~~al~~l~~~~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~~na~~~~ 216 (249)
T TIGR01485 164 QGSGKGQALQYLLQKLAMEPSQTLVCGDSGNDIELFEIGSVRGVIVSNAQEEL 216 (249)
T ss_pred CCCChHHHHHHHHHHcCCCccCEEEEECChhHHHHHHccCCcEEEECCCHHHH
Confidence 35789999999999998666678999999998888887 45666555555443
No 156
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=28.01 E-value=86 Score=28.16 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=25.6
Q ss_pred hhHHHHHHHHhCCCCcEEEEecCChhHHH---HHHHcCCc
Q 022279 224 LQCFQWIKERFNNPNVQFCVIGDGWEEGE---AAQAMQWP 260 (300)
Q Consensus 224 esCFerI~~RFgg~k~~fvvIGDG~eEe~---aAk~~~~P 260 (300)
.+.|..++++. +++++++||+|..+.. .+++++++
T Consensus 211 i~a~~~l~~~~--~~~~l~ivG~g~~~~~~~~~~~~~~~~ 248 (358)
T cd03812 211 IEIFAELLKKN--PNAKLLLVGDGELEEEIKKKVKELGLE 248 (358)
T ss_pred HHHHHHHHHhC--CCeEEEEEeCCchHHHHHHHHHhcCCC
Confidence 45778888775 7899999999997643 34456654
No 157
>PRK08238 hypothetical protein; Validated
Probab=27.93 E-value=4.6e+02 Score=27.07 Aligned_cols=32 Identities=13% Similarity=0.062 Sum_probs=20.3
Q ss_pred HHHHHHhCCCCcEEEEecCChhHHHHHHHcCCce
Q 022279 228 QWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPF 261 (300)
Q Consensus 228 erI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PF 261 (300)
+++++++|...+ +.|||...--.+++.-+-|+
T Consensus 131 ~~l~~~l~~~~~--~yvGDS~~Dlp~~~~A~~av 162 (479)
T PRK08238 131 AALVEAFGERGF--DYAGNSAADLPVWAAARRAI 162 (479)
T ss_pred HHHHHHhCccCe--eEecCCHHHHHHHHhCCCeE
Confidence 578899973334 55688876655555555444
No 158
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=27.52 E-value=89 Score=27.96 Aligned_cols=50 Identities=18% Similarity=0.131 Sum_probs=41.7
Q ss_pred cccChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCceEEeecCC
Q 022279 219 WEVGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFVKIDLGP 268 (300)
Q Consensus 219 ~kvGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFwrI~s~~ 268 (300)
..+.|..-.+++.+++|-+.-.-++|||+.---+..+..++++.--+.++
T Consensus 185 ~~~~K~~~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~~na~~ 234 (256)
T TIGR00099 185 KGVSKGSALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAMGNADE 234 (256)
T ss_pred CCCChHHHHHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCceeEecCchH
Confidence 34679999999999998555688999999999999999999876654444
No 159
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=27.37 E-value=95 Score=25.07 Aligned_cols=24 Identities=13% Similarity=-0.065 Sum_probs=13.1
Q ss_pred HHHHHHHhCCCCcEEEEecCChhH
Q 022279 227 FQWIKERFNNPNVQFCVIGDGWEE 250 (300)
Q Consensus 227 FerI~~RFgg~k~~fvvIGDG~eE 250 (300)
++++.++|+.++++++.|.....+
T Consensus 51 l~~~~~~~~~~~v~vi~vs~d~~~ 74 (149)
T cd03018 51 LRDSLELFEAAGAEVLGISVDSPF 74 (149)
T ss_pred HHHHHHHHHhCCCEEEEecCCCHH
Confidence 345555665455666666554433
No 160
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=27.33 E-value=1e+02 Score=26.16 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=40.8
Q ss_pred ccccChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCceEEeecCC
Q 022279 218 SWEVGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFVKIDLGP 268 (300)
Q Consensus 218 a~kvGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFwrI~s~~ 268 (300)
+..+.|.+=.+++.+.+|-+....++|||+.-=-+--+..+.+|.-=++.+
T Consensus 182 ~~~vsK~~ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~~~~am~na~~ 232 (254)
T PF08282_consen 182 PKGVSKGSAIKYLLEYLGISPEDIIAFGDSENDIEMLELAGYSVAMGNATP 232 (254)
T ss_dssp ETTSSHHHHHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSSEEEEETTS-H
T ss_pred eCCCCHHHHHHHHhhhcccccceeEEeecccccHhHHhhcCeEEEEcCCCH
Confidence 345789999999999998777899999999987777777777766544444
No 161
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=27.31 E-value=82 Score=28.13 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=23.6
Q ss_pred hhHHHHHHHHhCCCCcEEEEecCChhHHHH---HHHcCCc
Q 022279 224 LQCFQWIKERFNNPNVQFCVIGDGWEEGEA---AQAMQWP 260 (300)
Q Consensus 224 esCFerI~~RFgg~k~~fvvIGDG~eEe~a---Ak~~~~P 260 (300)
..+|+++.++. ++++|+++|+|.++++- ++.++.+
T Consensus 207 i~a~~~l~~~~--~~~~l~i~G~g~~~~~~~~~~~~~~~~ 244 (360)
T cd04951 207 LKAFAKLLSDY--LDIKLLIAGDGPLRATLERLIKALGLS 244 (360)
T ss_pred HHHHHHHHhhC--CCeEEEEEcCCCcHHHHHHHHHhcCCC
Confidence 45666666665 68999999999876432 3445543
No 162
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=26.77 E-value=2.6e+02 Score=26.73 Aligned_cols=78 Identities=14% Similarity=0.097 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhhcCCcccccccccccccccccCCceeEEEEcCCc---chHHHHHHHHhhcCcccccCcccccc-ccCh
Q 022279 148 WLSSARVLLEQCSSGKEVSTSSLGLASLDSADTKSEHVNILVTSGS---LIPSLVKCLLFRLDNLITHGNVYSSW-EVGK 223 (300)
Q Consensus 148 WLs~A~k~L~~i~~~~~~~~~~~~~~~~~~~~sr~~~vNVLVTs~q---LVPaLaK~LLygL~~~fpieNIYSa~-kvGK 223 (300)
++.-|..+|..+.++ +.--++||+.. .-.++..+--+|+...+ .+.|+.-. .-.|
T Consensus 119 ~ipGA~e~L~~L~~~--------------------G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~-~d~lllr~~~~~K 177 (266)
T TIGR01533 119 PVAGALDFLNYANSK--------------------GVKIFYVSNRSEKEKAATLKNLKRFGFPQAD-EEHLLLKKDKSSK 177 (266)
T ss_pred cCccHHHHHHHHHHC--------------------CCeEEEEeCCCcchHHHHHHHHHHcCcCCCC-cceEEeCCCCCCc
Confidence 567778888777642 34467788854 33445555567876533 24444322 2469
Q ss_pred hhHHHHHHHHhCCCCcEEEEecCChhH
Q 022279 224 LQCFQWIKERFNNPNVQFCVIGDGWEE 250 (300)
Q Consensus 224 esCFerI~~RFgg~k~~fvvIGDG~eE 250 (300)
+..++.|.++|+ + .+.|||...-
T Consensus 178 ~~rr~~I~~~y~---I-vl~vGD~~~D 200 (266)
T TIGR01533 178 ESRRQKVQKDYE---I-VLLFGDNLLD 200 (266)
T ss_pred HHHHHHHHhcCC---E-EEEECCCHHH
Confidence 999999999884 3 8999998543
No 163
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=26.55 E-value=3.2e+02 Score=25.66 Aligned_cols=79 Identities=19% Similarity=0.156 Sum_probs=46.8
Q ss_pred eeEEEEcCCcchHHHHHHH-HhhcCccccc--Cccccccc---cCh-hhHHHHHHHHhCCCCcEEEEecCChh---HHHH
Q 022279 184 HVNILVTSGSLIPSLVKCL-LFRLDNLITH--GNVYSSWE---VGK-LQCFQWIKERFNNPNVQFCVIGDGWE---EGEA 253 (300)
Q Consensus 184 ~vNVLVTs~qLVPaLaK~L-LygL~~~fpi--eNIYSa~k---vGK-esCFerI~~RFgg~k~~fvvIGDG~e---Ee~a 253 (300)
.+-|+||..++ -++...+ .|++..-+++ .. .+.+. .|+ ..-|.++.+++. |.+..|. ||..+ -..|
T Consensus 30 ~~~~~~tg~h~-~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~-pDiv~~~-gd~~~~la~a~a 105 (365)
T TIGR00236 30 DSYVIVTAQHR-EMLDQVLDLFHLPPDYDLNIMS-PGQTLGEITSNMLEGLEELLLEEK-PDIVLVQ-GDTTTTLAGALA 105 (365)
T ss_pred CEEEEEeCCCH-HHHHHHHHhcCCCCCeeeecCC-CCCCHHHHHHHHHHHHHHHHHHcC-CCEEEEe-CCchHHHHHHHH
Confidence 35588888887 3333333 3666543322 22 22221 222 356888888995 7765555 77543 3567
Q ss_pred HHHcCCceEEeec
Q 022279 254 AQAMQWPFVKIDL 266 (300)
Q Consensus 254 Ak~~~~PFwrI~s 266 (300)
|+.++.|...+..
T Consensus 106 a~~~~ipv~h~~~ 118 (365)
T TIGR00236 106 AFYLQIPVGHVEA 118 (365)
T ss_pred HHHhCCCEEEEeC
Confidence 8999999988753
No 164
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=26.24 E-value=29 Score=29.72 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=17.1
Q ss_pred eEEEeeCchhhhhHhhhhhhhhhhh
Q 022279 7 KVFIWDMDETLILLKSLLNGTFAQS 31 (300)
Q Consensus 7 rVFIWDLDETlIif~SLLtg~yA~~ 31 (300)
++.|||||.|||=+.....-.+.+.
T Consensus 1 k~viFDlDGTL~d~~~~~~~a~~~~ 25 (203)
T TIGR02252 1 KLITFDAVGTLLALKEPVGEVYCEI 25 (203)
T ss_pred CeEEEecCCceeeeCCCHHHHHHHH
Confidence 4679999999997655444444433
No 165
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=26.09 E-value=1.3e+02 Score=28.87 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=33.1
Q ss_pred hhHHHHHHHHhCCC--CcEEE-EecCChhHHHHHHHcCCceEEeecCC
Q 022279 224 LQCFQWIKERFNNP--NVQFC-VIGDGWEEGEAAQAMQWPFVKIDLGP 268 (300)
Q Consensus 224 esCFerI~~RFgg~--k~~fv-vIGDG~eEe~aAk~~~~PFwrI~s~~ 268 (300)
-+||+.|..++-.. ++.-+ ||+|..+=...|+++|+|+..+...+
T Consensus 100 g~nl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~~ 147 (286)
T PRK13011 100 DHCLNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWHGIPFHHFPITP 147 (286)
T ss_pred cccHHHHHHHHHcCCCCcEEEEEEECCccHHHHHHHhCCCEEEeCCCc
Confidence 48999999876333 34444 46778777778999999999986543
No 166
>PTZ00175 diphthine synthase; Provisional
Probab=25.99 E-value=1.5e+02 Score=28.23 Aligned_cols=66 Identities=23% Similarity=0.173 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHhCCCCcEEEEecCC------hhHHHHHHHcCCceEEee---cCCCCCCCCCCCccccccccceeee
Q 022279 223 KLQCFQWIKERFNNPNVQFCVIGDG------WEEGEAAQAMQWPFVKID---LGPGSCHRFPGLSLRTLGCYLSVVY 290 (300)
Q Consensus 223 KesCFerI~~RFgg~k~~fvvIGDG------~eEe~aAk~~~~PFwrI~---s~~d~~~~~p~l~~~~~~~~~~~vy 290 (300)
.++.-+.|.++..+++|.|++.||- .++..+|+++|+|+--|- +.+-+.. +||.+..-+.--++.|
T Consensus 63 ~e~~~~~ii~~a~~~~Vv~L~~GDP~i~~t~~~l~~~~~~~gi~vevIPGvSi~sA~~~--~Gl~~~~fg~~~sv~~ 137 (270)
T PTZ00175 63 VEEGCDEILEEAKEKNVAFLVVGDPFCATTHTDLYLRAKKKGIEVEVIHNASIMNAIGC--TGLQLYRFGETVSIPF 137 (270)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCCccCCHHHHHHHHHHCCCcEEEECCcCHHHHHhh--cCCCcCCCCceEEEEE
Confidence 4555566777765689999999994 789999999999988774 3322211 5666665555555544
No 167
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=25.03 E-value=31 Score=32.32 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=13.9
Q ss_pred eEEEeeCchhhhhHhhhhh
Q 022279 7 KVFIWDMDETLILLKSLLN 25 (300)
Q Consensus 7 rVFIWDLDETlIif~SLLt 25 (300)
+.+|||||-|||=......
T Consensus 63 k~vIFDlDGTLiDS~~~~~ 81 (273)
T PRK13225 63 QAIIFDFDGTLVDSLPTVV 81 (273)
T ss_pred CEEEECCcCccccCHHHHH
Confidence 4679999999986544443
No 168
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=24.66 E-value=83 Score=29.11 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=28.4
Q ss_pred HHHHHHhCCCCcEEEEecCChhHHHHHHHcCCceEEeecCCCCCCC
Q 022279 228 QWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFVKIDLGPGSCHR 273 (300)
Q Consensus 228 erI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFwrI~s~~d~~~~ 273 (300)
..+.+.||=+-+...++.+-.|-.+||+.+++|.+==-.+|++.|+
T Consensus 16 ~~lL~~yGI~~~~~~~~~~~~ea~~~a~~ig~PvvlKi~sp~i~HK 61 (222)
T PF13549_consen 16 KELLAAYGIPVPPTRLVTSAEEAVAAAEEIGFPVVLKIVSPDIAHK 61 (222)
T ss_dssp HHHHHTTT------EEESSHHHHHHHHHHH-SSEEEEEE-TT---H
T ss_pred HHHHHHcCcCCCCeeEeCCHHHHHHHHHHhCCCEEEEEecCCCCcC
Confidence 4678899878889999999999999999999997644445666663
No 169
>PRK15376 pathogenicity island 1 effector protein SipA; Provisional
Probab=24.57 E-value=71 Score=33.94 Aligned_cols=55 Identities=11% Similarity=0.305 Sum_probs=40.9
Q ss_pred CCCCCccCCCCCCCCC-CchhhhHHHHHHHHHHHHHhcCcccccChH------HHHHHHHHHhhh
Q 022279 84 DLSDYEFDRDGLCPPF-DDLSLKKIAYRHRAIAHKYKEGLQNIFDKE------MLRVWDELYDMT 141 (300)
Q Consensus 84 DLs~y~F~~dgf~~p~-~~~nmRKLA~ryR~I~e~Y~~~l~~ll~~~------~~~~w~~L~~~~ 141 (300)
-.|...|.++||-+.. ..++||-++|--| +.+-.-+.+-|.|+ .|.++..||++|
T Consensus 499 ~FsglkFkqng~L~~iPs~t~m~~m~~~~R---e~fL~vvR~ALEP~astP~~~RRaFd~LRaeI 560 (670)
T PRK15376 499 PFSGLKFKQNSFLSTVPSVTNMHSMHFDAR---ETFLGVIRKALEPDTSTPFPVRRAFDGLRAEI 560 (670)
T ss_pred CCCcceeccCCceeecchhhhhhhcccchH---HHHHHHHHhhcCcccCCcchHHHHHHHHHhhc
Confidence 4688899999986643 5689999999766 55555555666654 788899888865
No 170
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=24.19 E-value=8.3e+02 Score=25.47 Aligned_cols=74 Identities=16% Similarity=0.188 Sum_probs=45.7
Q ss_pred EEEcCCcchHHHHHHHHhhcCcccccCccccccccChhhHHHHHHHHhC----CCCcE-------------------EEE
Q 022279 187 ILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVGKLQCFQWIKERFN----NPNVQ-------------------FCV 243 (300)
Q Consensus 187 VLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvGKesCFerI~~RFg----g~k~~-------------------fvv 243 (300)
.|..-+.++-+++++|+ .||--. +.-.+-.|...+-+++++.+. |.++. =++
T Consensus 367 aI~gdpd~~~~l~~fL~-ElGmep----v~v~~~~~~~~~~~~l~~ll~~~~~~~~~~v~~~~Dl~~l~~~l~~~~~Dll 441 (515)
T TIGR01286 367 AIYGDPDFVMGLVRFVL-ELGCEP----VHILCTNGTKRWKAEMKALLAASPYGQNATVWIGKDLWHLRSLVFTEPVDFL 441 (515)
T ss_pred EEECCHHHHHHHHHHHH-HCCCEE----EEEEeCCCCHHHHHHHHHHHhcCCCCCccEEEeCCCHHHHHHHHhhcCCCEE
Confidence 67778889999999997 887543 222232333344455554431 12221 134
Q ss_pred ecCChhHHHHHHHcCCceEEeec
Q 022279 244 IGDGWEEGEAAQAMQWPFVKIDL 266 (300)
Q Consensus 244 IGDG~eEe~aAk~~~~PFwrI~s 266 (300)
||... +...|++++.|++||+.
T Consensus 442 iG~s~-~k~~a~~~giPlir~gf 463 (515)
T TIGR01286 442 IGNSY-GKYIQRDTLVPLIRIGF 463 (515)
T ss_pred EECch-HHHHHHHcCCCEEEecC
Confidence 55555 46789999999999985
No 171
>TIGR01169 rplA_bact ribosomal protein L1, bacterial/chloroplast. This model describes bacterial (and chloroplast) ribosomal protein L1. The apparent mitochondrial L1 is sufficiently diverged to be the subject of a separate model.
Probab=24.19 E-value=87 Score=29.18 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=20.6
Q ss_pred CCCcEEEEecCChhHHHHHHHcCCceE
Q 022279 236 NPNVQFCVIGDGWEEGEAAQAMQWPFV 262 (300)
Q Consensus 236 g~k~~fvvIGDG~eEe~aAk~~~~PFw 262 (300)
|++.+-||++||.. ++.|+..|-+++
T Consensus 68 gk~~kV~Vfa~~~~-~~~Ak~aGa~~v 93 (227)
T TIGR01169 68 GKTVRVAVFAKGEK-AEEAKAAGADYV 93 (227)
T ss_pred CCCcEEEEEcCchh-HHHHHHcCCCEe
Confidence 37788999999854 556899998876
No 172
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=24.03 E-value=1.6e+02 Score=28.20 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=32.8
Q ss_pred cChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCceE
Q 022279 221 VGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPFV 262 (300)
Q Consensus 221 vGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PFw 262 (300)
..|....+.+.++.|=|...|..+-+..+=.++++.+++|++
T Consensus 112 ~dK~~~k~~l~~~~gip~p~~~~~~s~~~l~~~~~~~g~P~V 153 (395)
T PRK09288 112 MNREGIRRLAAEELGLPTSPYRFADSLEELRAAVEEIGYPCV 153 (395)
T ss_pred hCHHHHHHHHHHhCCCCCCCceEECCHHHHHHHHHhcCCCEE
Confidence 457776666667888788899999887666677888999975
No 173
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.97 E-value=3.6e+02 Score=23.32 Aligned_cols=36 Identities=8% Similarity=0.118 Sum_probs=30.5
Q ss_pred CccccccccChhhHHHHHHHHhCCCCcEEEEecCCh
Q 022279 213 GNVYSSWEVGKLQCFQWIKERFNNPNVQFCVIGDGW 248 (300)
Q Consensus 213 eNIYSa~kvGKesCFerI~~RFgg~k~~fvvIGDG~ 248 (300)
-+.|+++|.+-++..+.+...++.++++..+|.-|.
T Consensus 156 ~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~ 191 (253)
T PRK08642 156 YHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGL 191 (253)
T ss_pred ccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecc
Confidence 468999999999999999999986678888886553
No 174
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=23.84 E-value=1.4e+02 Score=24.51 Aligned_cols=38 Identities=13% Similarity=0.057 Sum_probs=25.1
Q ss_pred HHHHHHHhCCCCcEEEEecCChhHHHH--HHHcCCceEEe
Q 022279 227 FQWIKERFNNPNVQFCVIGDGWEEGEA--AQAMQWPFVKI 264 (300)
Q Consensus 227 FerI~~RFgg~k~~fvvIGDG~eEe~a--Ak~~~~PFwrI 264 (300)
+.++.++|+++++.++.|.-...++.+ +++++.||.-+
T Consensus 53 l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l 92 (154)
T PRK09437 53 LRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLL 92 (154)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEE
Confidence 678888887778999888876554432 24455554433
No 175
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=23.63 E-value=80 Score=30.20 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=33.8
Q ss_pred hhHHHHHHHHhCCCC--c-EEEEecCChhHHHHHHHcCCceEEeecCC
Q 022279 224 LQCFQWIKERFNNPN--V-QFCVIGDGWEEGEAAQAMQWPFVKIDLGP 268 (300)
Q Consensus 224 esCFerI~~RFgg~k--~-~fvvIGDG~eEe~aAk~~~~PFwrI~s~~ 268 (300)
-+||+-|..+.-..+ + -=+||++..+=...|+++|+|+..++..+
T Consensus 100 gsnl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~~ 147 (286)
T PRK06027 100 DHCLGDLLWRWRSGELPVEIAAVISNHDDLRSLVERFGIPFHHVPVTK 147 (286)
T ss_pred CCCHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEeccCc
Confidence 489999998874322 2 44567788777778999999999987654
No 176
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=23.62 E-value=7.6e+02 Score=24.82 Aligned_cols=72 Identities=24% Similarity=0.256 Sum_probs=43.9
Q ss_pred EEEcCCcchHHHHHHHHhhcCcccccCccccccccChhhHHHHHHHHhCCCCcEE-------------------EEecCC
Q 022279 187 ILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVGKLQCFQWIKERFNNPNVQF-------------------CVIGDG 247 (300)
Q Consensus 187 VLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvGKesCFerI~~RFgg~k~~f-------------------vvIGDG 247 (300)
++.+-+...-++++.| -.||--+..= .+..+-..=.+||+++.+ ..+.. ++||.+
T Consensus 330 ~i~~g~~~~~~l~~~l-~elGmevv~~----~t~~~~~~d~~~l~~~~~-~~~~v~~~~d~~e~~~~i~~~~pDl~ig~~ 403 (456)
T TIGR01283 330 AIYTGGVKSWSLVSAL-QDLGMEVVAT----GTQKGTEEDYARIRELMG-EGTVMLDDANPRELLKLLLEYKADLLIAGG 403 (456)
T ss_pred EEEcCCchHHHHHHHH-HHCCCEEEEE----eeecCCHHHHHHHHHHcC-CCeEEEeCCCHHHHHHHHhhcCCCEEEEcc
Confidence 5667778888999975 5788766542 222221122667777764 33221 345554
Q ss_pred hhHHHHHHHcCCceEEee
Q 022279 248 WEEGEAAQAMQWPFVKID 265 (300)
Q Consensus 248 ~eEe~aAk~~~~PFwrI~ 265 (300)
.+ ...|+++++||.++.
T Consensus 404 ~~-~~~a~k~giP~i~~~ 420 (456)
T TIGR01283 404 KE-RYTALKLGIPFCDIN 420 (456)
T ss_pred ch-HHHHHhcCCCEEEcc
Confidence 44 456778999998874
No 177
>TIGR02834 spo_ytxC putative sporulation protein YtxC. This uncharacterized protein is part of a panel of proteins conserved in all known endospore-forming Firmicutes (low-GC Gram-positive bacteria), including Carboxydothermus hydrogenoformans, and nowhere else.
Probab=23.29 E-value=4.8e+02 Score=25.19 Aligned_cols=121 Identities=19% Similarity=0.231 Sum_probs=69.1
Q ss_pred HHHHHHHHhhhhhhchhhhhhcCccccccccccCCCCCCCCCccCCCCCCCCCCchhhhHHHHHHHHHHHHHhc----Cc
Q 022279 47 MWENHILNVCDECFFYEQIENNNTPFLDALKQYDDGRDLSDYEFDRDGLCPPFDDLSLKKIAYRHRAIAHKYKE----GL 122 (300)
Q Consensus 47 ~mE~~If~l~D~hfFfndlee~d~~~iddv~~dDnG~DLs~y~F~~dgf~~p~~~~nmRKLA~ryR~I~e~Y~~----~l 122 (300)
.=++++..+..+.|||.+-||+.|..=-..+--++..+- .|.....+.+-+.-+.+|.+--+. ++
T Consensus 75 ~e~~~i~~ii~~~Y~f~~~eE~~~I~~~a~~iL~~e~~~-----------~~~~~~~~~rk~~I~~~i~~~l~e~~~i~i 143 (276)
T TIGR02834 75 KEDELILKIIEESYYFTDQEEIEQILAIANSILTGERKD-----------DPSEIYKMNRKNEILDEINEFLEENDEINI 143 (276)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHcCCccC-----------CccchhhhhHHHHHHHHHHHHhccCCEEee
Confidence 445566666666666667777776543333333322210 111112344445555556655433 78
Q ss_pred ccccChHHHHHHHHHHhhhhhhhhhHHHHH-----HHHHHHhhcCCcccccccccccccccccCCceeEEEEcCCc
Q 022279 123 QNIFDKEMLRVWDELYDMTDEYTDRWLSSA-----RVLLEQCSSGKEVSTSSLGLASLDSADTKSEHVNILVTSGS 193 (300)
Q Consensus 123 ~~ll~~~~~~~w~~L~~~~d~~Td~WLs~A-----~k~L~~i~~~~~~~~~~~~~~~~~~~~sr~~~vNVLVTs~q 193 (300)
.|++.=.-++-+.+|+.-+|.--|-.+-.- -+.|.-...- ..++-..|||+++.|+
T Consensus 144 dgFitFRLk~y~~~L~~~Ve~aidEy~~EkEYqeFI~lLryFV~~---------------Qe~ki~~Vhvv~~~~~ 204 (276)
T TIGR02834 144 EGFVTFRLKPYVEELRDIVEKAIDEYLMEKEYQEFIKLLRYFVEI---------------QDSRLEIVHIVVDGGS 204 (276)
T ss_pred ccceeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------cCcCccEEEEEEECCe
Confidence 888887788888888766665555554322 4445444321 2478899999997544
No 178
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=23.14 E-value=1.5e+02 Score=26.51 Aligned_cols=34 Identities=24% Similarity=0.157 Sum_probs=25.0
Q ss_pred CCcEEEEecCCh-------hHHHHHHHcCCceEEeecCCCC
Q 022279 237 PNVQFCVIGDGW-------EEGEAAQAMQWPFVKIDLGPGS 270 (300)
Q Consensus 237 ~k~~fvvIGDG~-------eEe~aAk~~~~PFwrI~s~~d~ 270 (300)
++.+||++|||. |+-..|..++-|++-|=.++..
T Consensus 97 ~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~ 137 (195)
T cd02007 97 KRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEM 137 (195)
T ss_pred CCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCc
Confidence 457899999997 5666666678888877666654
No 179
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=23.04 E-value=1.2e+02 Score=25.02 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=45.5
Q ss_pred EEEEcCCcchHHHHHHHHhhcCcccccCccccccccChhhHHHHHHHHhCCCCcEEEEecCCh-----hHHHHHHHcCCc
Q 022279 186 NILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVGKLQCFQWIKERFNNPNVQFCVIGDGW-----EEGEAAQAMQWP 260 (300)
Q Consensus 186 NVLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvGKesCFerI~~RFgg~k~~fvvIGDG~-----eEe~aAk~~~~P 260 (300)
-|++.+|+-.......+...-...+-+...+++...|=-.-.-.=..+- .+.++|++|||. +|-..|..++.|
T Consensus 15 ~i~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~~a~Gaa~a~~--~~~vv~~~GDG~~~~~~~~l~ta~~~~~~ 92 (168)
T cd00568 15 IVVNDAGNSAYWAYRYLPLRRGRRFLTSTGFGAMGYGLPAAIGAALAAP--DRPVVCIAGDGGFMMTGQELATAVRYGLP 92 (168)
T ss_pred EEEeCCcHHHHHHHHheeeCCCCcEEeCCCchhhhhhHHHHHHHHHhCC--CCcEEEEEcCcHHhccHHHHHHHHHcCCC
Confidence 3555556666666655544222222223334443322111111111111 356899999985 778888899999
Q ss_pred eEEeecCCCC
Q 022279 261 FVKIDLGPGS 270 (300)
Q Consensus 261 FwrI~s~~d~ 270 (300)
+.-|=.++..
T Consensus 93 ~~~iv~nN~~ 102 (168)
T cd00568 93 VIVVVFNNGG 102 (168)
T ss_pred cEEEEEECCc
Confidence 8887766654
No 180
>PLN02501 digalactosyldiacylglycerol synthase
Probab=22.95 E-value=78 Score=35.04 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=21.9
Q ss_pred HHHHHHHHhCCCCcEEEEecCChhHHHH---HHHcCC
Q 022279 226 CFQWIKERFNNPNVQFCVIGDGWEEGEA---AQAMQW 259 (300)
Q Consensus 226 CFerI~~RFgg~k~~fvvIGDG~eEe~a---Ak~~~~ 259 (300)
.|..++.+. +++++++||||+++++. |++++.
T Consensus 567 Ala~L~~~~--pnvrLvIVGDGP~reeLe~la~eLgL 601 (794)
T PLN02501 567 LLAKHKNEL--DGFNLDVFGNGEDAHEVQRAAKRLDL 601 (794)
T ss_pred HHHHHHhhC--CCeEEEEEcCCccHHHHHHHHHHcCC
Confidence 445555554 57999999999987543 455665
No 181
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=22.94 E-value=1.6e+02 Score=23.91 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=39.4
Q ss_pred hHHHHHHHH---hCCCCcEEEEecCChhHHHHHHHcC-----CceEEeecCCCCCCCCCC----Cccccccccc
Q 022279 225 QCFQWIKER---FNNPNVQFCVIGDGWEEGEAAQAMQ-----WPFVKIDLGPGSCHRFPG----LSLRTLGCYL 286 (300)
Q Consensus 225 sCFerI~~R---Fgg~k~~fvvIGDG~eEe~aAk~~~-----~PFwrI~s~~d~~~~~p~----l~~~~~~~~~ 286 (300)
.-|+-+.+. |-| |+. .|++|+.++..+++.+| +|+.+|.+..+ ...||. ++...|...+
T Consensus 34 ~~~~~vAk~~~~~kg-ki~-Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~-~~Ky~~~~~~~t~~~i~~Fv 104 (111)
T cd03072 34 EFKQAVARQLISEKG-AIN-FLTADGDKFRHPLLHLGKTPADLPVIAIDSFRH-MYLFPDFEDVYVPGKLKQFV 104 (111)
T ss_pred HHHHHHHHHHHhcCc-eEE-EEEEechHhhhHHHHcCCCHhHCCEEEEEcchh-cCcCCCCccccCHHHHHHHH
Confidence 347778888 853 555 56678888877887765 79999999843 357763 3444444433
No 182
>PRK05424 rplA 50S ribosomal protein L1; Validated
Probab=22.82 E-value=92 Score=29.06 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=21.0
Q ss_pred CCCcEEEEecCChhHHHHHHHcCCceE
Q 022279 236 NPNVQFCVIGDGWEEGEAAQAMQWPFV 262 (300)
Q Consensus 236 g~k~~fvvIGDG~eEe~aAk~~~~PFw 262 (300)
|++++-||++||...+ .|+..|.+|+
T Consensus 69 gk~~kI~Vfa~~~~~~-~Ak~aGa~~v 94 (230)
T PRK05424 69 GKTVRVAVFAKGEKAE-EAKAAGADIV 94 (230)
T ss_pred CCCcEEEEECChHhHH-HHHHcCCCEe
Confidence 3778999999987544 5899999976
No 183
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=22.81 E-value=92 Score=18.37 Aligned_cols=27 Identities=7% Similarity=0.294 Sum_probs=18.2
Q ss_pred hHhhhhhhhhhhhcCCCCChhhhhHHHHHHHH
Q 022279 19 LLKSLLNGTFAQSFNDLKDADKGVQIGRMWEN 50 (300)
Q Consensus 19 if~SLLtg~yA~~~~g~KD~~~~v~LG~~mE~ 50 (300)
.|+++++| |++. +++.++.++-..|.+
T Consensus 2 ~~n~li~~-~~~~----~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDG-LCKA----GRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHH-HHHC----CCHHHHHHHHHHHHH
Confidence 46667764 5554 788888888777654
No 184
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=22.43 E-value=4.7e+02 Score=25.37 Aligned_cols=83 Identities=24% Similarity=0.266 Sum_probs=52.3
Q ss_pred eeEEEEcCCcchHH----HHHHHHhhcCcccccCc-ccc--cc---c-cCh-hhHHHHHHHHhCCCCcEEEEecCChh--
Q 022279 184 HVNILVTSGSLIPS----LVKCLLFRLDNLITHGN-VYS--SW---E-VGK-LQCFQWIKERFNNPNVQFCVIGDGWE-- 249 (300)
Q Consensus 184 ~vNVLVTs~qLVPa----LaK~LLygL~~~fpieN-IYS--a~---k-vGK-esCFerI~~RFgg~k~~fvvIGDG~e-- 249 (300)
.+-+++|..|+-+. +......+++....++- +-+ .. + +|+ ..-|+++.+++. |. .-+|-||+-+
T Consensus 30 ~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Pd-~vlv~GD~~~~l 107 (365)
T TIGR03568 30 ELQLIVTGMHLSPEYGNTVNEIEKDGFDIDEKIEILLDSDSNAGMAKSMGLTIIGFSDAFERLK-PD-LVVVLGDRFEML 107 (365)
T ss_pred cEEEEEeCCCCChhhccHHHHHHHcCCCCCCccccccCCCCCCCHHHHHHHHHHHHHHHHHHhC-CC-EEEEeCCchHHH
Confidence 45567777788774 56666565643211111 211 11 1 222 367889999995 76 5667788864
Q ss_pred -HHHHHHHcCCceEEeecCC
Q 022279 250 -EGEAAQAMQWPFVKIDLGP 268 (300)
Q Consensus 250 -Ee~aAk~~~~PFwrI~s~~ 268 (300)
-..||..+++|+..|.-..
T Consensus 108 a~alaA~~~~IPv~HveaG~ 127 (365)
T TIGR03568 108 AAAIAAALLNIPIAHIHGGE 127 (365)
T ss_pred HHHHHHHHhCCcEEEEECCc
Confidence 4668899999999887653
No 185
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=22.37 E-value=1.6e+02 Score=26.42 Aligned_cols=45 Identities=20% Similarity=0.130 Sum_probs=30.2
Q ss_pred ChhhHHHHHHHHhCCC--Cc-EEEEecCChhHH--HHHHHcCCceEEeec
Q 022279 222 GKLQCFQWIKERFNNP--NV-QFCVIGDGWEEG--EAAQAMQWPFVKIDL 266 (300)
Q Consensus 222 GKesCFerI~~RFgg~--k~-~fvvIGDG~eEe--~aAk~~~~PFwrI~s 266 (300)
|.-+||+-|.++.-.. ++ .-+||+|..+-. +-|+++|+|+..++.
T Consensus 9 g~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~~ 58 (190)
T TIGR00639 9 GNGSNLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSL 58 (190)
T ss_pred CCChhHHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEECc
Confidence 5568888888877322 22 334568865432 568999999998754
No 186
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=22.34 E-value=2.9e+02 Score=27.39 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=37.1
Q ss_pred EEcCCcchHHHHHHHHhhcCcccccCccccccccChhhHHHHHHHHhC-------------------CCCcEEEEecCCh
Q 022279 188 LVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVGKLQCFQWIKERFN-------------------NPNVQFCVIGDGW 248 (300)
Q Consensus 188 LVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvGKesCFerI~~RFg-------------------g~k~~fvvIGDG~ 248 (300)
+.+.+.++-+|+|.|+-.||--+-. |.+.+ ++..=|+...++.. ..+... +||...
T Consensus 293 i~~~~~~~~~la~~l~~elG~~v~~--i~~~~--~~~~~~~~~~~~~~~~~~~v~d~~~~e~~~~~~~~~pdl-iig~s~ 367 (415)
T cd01977 293 IWTGGPKLWHWTKVIEDELGMQVVA--MSSKF--GHQEDFEKVIARGGEGTIYIDDPNELEFFEILEMLKPDI-ILTGPR 367 (415)
T ss_pred EECCCchHHHHHHHHHHhcCCEEEE--EEEEe--ccHHHHHHHHHhcCCceEEEeCCCHHHHHHHHHhcCCCE-EEecCc
Confidence 3566778899999887444433211 22211 11122333333331 011222 455544
Q ss_pred hHHHHHHHcCCceEEe
Q 022279 249 EEGEAAQAMQWPFVKI 264 (300)
Q Consensus 249 eEe~aAk~~~~PFwrI 264 (300)
+. ..|++++.||+++
T Consensus 368 ~~-~~a~~lgip~~~~ 382 (415)
T cd01977 368 VG-ELVKKLHVPYVNI 382 (415)
T ss_pred cc-hhhhhcCCCEEec
Confidence 44 4788899999998
No 187
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=22.25 E-value=56 Score=29.30 Aligned_cols=38 Identities=26% Similarity=0.292 Sum_probs=27.6
Q ss_pred cChhhHHHHHHHHhCCC-----CcEEEEecCChhH-HHHHHHcC
Q 022279 221 VGKLQCFQWIKERFNNP-----NVQFCVIGDGWEE-GEAAQAMQ 258 (300)
Q Consensus 221 vGKesCFerI~~RFgg~-----k~~fvvIGDG~eE-e~aAk~~~ 258 (300)
..|..||+.|.+.|+.. .=.-|||||..=. --+|..||
T Consensus 114 ~kKP~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G 157 (168)
T PF09419_consen 114 AKKPGCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMG 157 (168)
T ss_pred CCCCccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccC
Confidence 45669999999999744 3368999998644 34566666
No 188
>TIGR01170 rplA_mito ribosomal protein L1, mitochondrial. This model represents the mitochondrial homolog of bacterial ribosomal protein L1. Unlike chloroplast L1, this form was not sufficiently similar to bacterial forms to include in a single bacterial/organellar L1.
Probab=21.99 E-value=1.2e+02 Score=26.52 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=21.5
Q ss_pred CCCcEEEEecCChhHHHHHHHcCCceE
Q 022279 236 NPNVQFCVIGDGWEEGEAAQAMQWPFV 262 (300)
Q Consensus 236 g~k~~fvvIGDG~eEe~aAk~~~~PFw 262 (300)
|++.+-||+++|.++.+.||..+-.++
T Consensus 50 ~k~~kV~Vf~~~~~~~~~Ak~aGa~~v 76 (141)
T TIGR01170 50 GKEPKIAVFTKGASEVEEAREAGADYV 76 (141)
T ss_pred CCCCEEEEECCChHHHHHHHHcCCCEe
Confidence 367899999999997777888876543
No 189
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=21.96 E-value=3.5e+02 Score=25.80 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=40.9
Q ss_pred EEEcCCcchH--HHHHHHHhhcCcccccCccccccccChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcC
Q 022279 187 ILVTSGSLIP--SLVKCLLFRLDNLITHGNVYSSWEVGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQ 258 (300)
Q Consensus 187 VLVTs~qLVP--aLaK~LLygL~~~fpieNIYSa~kvGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~ 258 (300)
++||+..=.| ..++.|+=++|--++.++|+++. .+...+.++++ ++ .||+..+|. .+.++..+
T Consensus 40 ~flTNn~g~s~~~~~~~l~~~lG~~~~~~~i~~s~-----~~~~~ll~~~~-~~-v~viG~~~~--~~~l~~~G 104 (321)
T TIGR01456 40 IFLTNGGGFSERARAEEISSLLGVDVSPLQVIQSH-----SPYKSLVNKYE-KR-ILAVGTGSV--RGVAEGYG 104 (321)
T ss_pred EEEecCCCCCHHHHHHHHHHHcCCCCCHHHHHhhh-----HHHHHHHHHcC-Cc-eEEEeChHH--HHHHHHcC
Confidence 8888766444 55677766777778889999986 36677777885 33 455544443 33355555
No 190
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=21.75 E-value=1.7e+02 Score=31.29 Aligned_cols=53 Identities=26% Similarity=0.439 Sum_probs=34.9
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHhhcCCcccccccccccccccccCCceeEEEEc------CCcchHHHHHHHH
Q 022279 132 RVWDELYDMTDEYTDRWLSSARVLLEQCSSGKEVSTSSLGLASLDSADTKSEHVNILVT------SGSLIPSLVKCLL 203 (300)
Q Consensus 132 ~~w~~L~~~~d~~Td~WLs~A~k~L~~i~~~~~~~~~~~~~~~~~~~~sr~~~vNVLVT------s~qLVPaLaK~LL 203 (300)
+.|..+.. +-+||...+.||+-...-. + .-..+.++|||= .|..|-|||++||
T Consensus 311 ~~~ls~LE-----~SgWL~~i~~~L~~a~~ia------------~--~l~~~~~sVlvhcsdGwDrT~qV~SLaQllL 369 (573)
T KOG1089|consen 311 DKWLSLLE-----SSGWLKHIRAILKAAAEIA------------K--CLSSEGASVLVHCSDGWDRTCQVSSLAQLLL 369 (573)
T ss_pred HHHHHHhh-----hccHHHHHHHHHHHHHHHH------------H--HHHhCCCeEEEEccCCcchhHHHHHHHHHHh
Confidence 44554443 3489999999987543210 1 123356899984 4678999999997
No 191
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=21.68 E-value=1.2e+02 Score=26.45 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=33.0
Q ss_pred cccccccChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHH
Q 022279 215 VYSSWEVGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQ 255 (300)
Q Consensus 215 IYSa~kvGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk 255 (300)
|.+..+.||=.-=+.+.+++| +++.|++-|.-.++|-.++
T Consensus 6 i~G~~~sGKS~~a~~l~~~~~-~~~~~iat~~~~~~e~~~r 45 (170)
T PRK05800 6 VTGGARSGKSRFAERLAAQSG-LQVLYIATAQPFDDEMAAR 45 (170)
T ss_pred EECCCCccHHHHHHHHHHHcC-CCcEeCcCCCCChHHHHHH
Confidence 567788999999999999996 7899999998888775444
No 192
>COG5275 BRCT domain type II [General function prediction only]
Probab=21.55 E-value=1.2e+02 Score=29.20 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=20.2
Q ss_pred CcEEEEecC--ChhHHHHHHHcCCceE
Q 022279 238 NVQFCVIGD--GWEEGEAAQAMQWPFV 262 (300)
Q Consensus 238 k~~fvvIGD--G~eEe~aAk~~~~PFw 262 (300)
|-+|+|.|| |+---|-+|+|++|..
T Consensus 194 kTtflvlGdnaGP~K~ekiKqlkIkai 220 (276)
T COG5275 194 KTTFLVLGDNAGPSKMEKIKQLKIKAI 220 (276)
T ss_pred ceeEEEecCCCChHHHHHHHHhCCccc
Confidence 468999998 6677778999998864
No 193
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=21.19 E-value=1.7e+02 Score=30.15 Aligned_cols=41 Identities=22% Similarity=0.180 Sum_probs=30.6
Q ss_pred hHHHHHHHHhCCCCcEEEE-------ecCChhHH--HHHHHcCCceEEeec
Q 022279 225 QCFQWIKERFNNPNVQFCV-------IGDGWEEG--EAAQAMQWPFVKIDL 266 (300)
Q Consensus 225 sCFerI~~RFgg~k~~fvv-------IGDG~eEe--~aAk~~~~PFwrI~s 266 (300)
.+..+|++||. +++-||+ |||-.|-- ++.+++++|.+.+++
T Consensus 87 ~~i~ei~~~~~-p~~ifv~~TC~t~iIGdDle~va~~~~~~~gipVV~v~~ 136 (457)
T CHL00073 87 RLCLQIKKDRN-PSVIVWIGTCTTEIIKMDLEGMAPKLEAEIGIPIVVARA 136 (457)
T ss_pred HHHHHHHHhCC-CCEEEEEccCcHHhhccCHHHHHHHHHHhhCCCEEEEeC
Confidence 56678899994 9977774 67766543 445578999999988
No 194
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=21.10 E-value=77 Score=31.33 Aligned_cols=25 Identities=24% Similarity=0.586 Sum_probs=18.2
Q ss_pred HHHHcCCceEEeecCCCCCC-CCCCC
Q 022279 253 AAQAMQWPFVKIDLGPGSCH-RFPGL 277 (300)
Q Consensus 253 aAk~~~~PFwrI~s~~d~~~-~~p~l 277 (300)
.|+.+||||.+|+.++++.. -+.|-
T Consensus 84 lA~~l~~~~~rV~~~~~l~~~DliG~ 109 (327)
T TIGR01650 84 IAARLNWPCVRVNLDSHVSRIDLVGK 109 (327)
T ss_pred HHHHHCCCeEEEEecCCCChhhcCCC
Confidence 46667799999999999854 24443
No 195
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=20.91 E-value=1.6e+02 Score=26.56 Aligned_cols=49 Identities=14% Similarity=0.153 Sum_probs=42.4
Q ss_pred ccChhhHHHHHHHHhCCC--CcEEEEecCChhHHHHHHHcCCceEEeecCC
Q 022279 220 EVGKLQCFQWIKERFNNP--NVQFCVIGDGWEEGEAAQAMQWPFVKIDLGP 268 (300)
Q Consensus 220 kvGKesCFerI~~RFgg~--k~~fvvIGDG~eEe~aAk~~~~PFwrI~s~~ 268 (300)
.+.|..-.+++.+++|-+ .-..++|||+.--.+..+..+.++--=+.++
T Consensus 174 ~~~Kg~ai~~l~~~~~i~~~~~~~~a~GD~~ND~~Ml~~ag~~vam~Na~~ 224 (256)
T TIGR01486 174 GSDKGKAANALKQFYNQPGGAIKVVGLGDSPNDLPLLEVVDLAVVVPGPNG 224 (256)
T ss_pred CCCHHHHHHHHHHHHhhcCCCceEEEEcCCHhhHHHHHHCCEEEEeCCCCC
Confidence 467999999999999755 6678999999999999999999998777664
No 196
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=20.75 E-value=2.1e+02 Score=24.88 Aligned_cols=42 Identities=21% Similarity=0.434 Sum_probs=35.2
Q ss_pred ccChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHcCCce
Q 022279 220 EVGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAMQWPF 261 (300)
Q Consensus 220 kvGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~~~PF 261 (300)
.+.|..-.+++.+++|-+.-.-++|||+.---+..+..++++
T Consensus 177 ~~~Kg~al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~v 218 (221)
T TIGR02463 177 SSSKGKAANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAV 218 (221)
T ss_pred CCCHHHHHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceE
Confidence 356999999999999866677999999998888888777765
No 197
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=20.72 E-value=89 Score=27.97 Aligned_cols=27 Identities=26% Similarity=0.580 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHhCCCCcEEEEecCChhHH
Q 022279 223 KLQCFQWIKERFNNPNVQFCVIGDGWEEG 251 (300)
Q Consensus 223 KesCFerI~~RFgg~k~~fvvIGDG~eEe 251 (300)
.+.|++|+.+|||.-+|-++|| ..||.
T Consensus 104 ~~~~~~~~~~r~g~~ni~~a~v--H~DE~ 130 (196)
T PF01076_consen 104 FEDSLEWLQERYGNENIVSAVV--HLDET 130 (196)
T ss_pred HHHHHHHHHHHCCchhEEEEEE--ECCCC
Confidence 4577889999998778888777 45555
No 198
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=20.71 E-value=2.2e+02 Score=23.01 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=47.5
Q ss_pred eeEEEEcCCcc-hHHHHHHHHhhcCcccccCccccccccC----hhhHHHHHHHHhCCCCcEEEEecCChhH--------
Q 022279 184 HVNILVTSGSL-IPSLVKCLLFRLDNLITHGNVYSSWEVG----KLQCFQWIKERFNNPNVQFCVIGDGWEE-------- 250 (300)
Q Consensus 184 ~vNVLVTs~qL-VPaLaK~LLygL~~~fpieNIYSa~kvG----KesCFerI~~RFgg~k~~fvvIGDG~eE-------- 250 (300)
.+++.=|.|+- -.++.+..+-+.+.++= +|+++... -....++|..+...++.-.++||--.|.
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~il---v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~ 126 (164)
T cd04175 50 MLEILDTAGTEQFTAMRDLYMKNGQGFVL---VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGK 126 (164)
T ss_pred EEEEEECCCcccchhHHHHHHhhCCEEEE---EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcH
Confidence 45677788763 33444444444333221 34433211 1235566666554567788998844331
Q ss_pred ---HHHHHHcCCceEEeecCCC
Q 022279 251 ---GEAAQAMQWPFVKIDLGPG 269 (300)
Q Consensus 251 ---e~aAk~~~~PFwrI~s~~d 269 (300)
++.|+++++||..+|+...
T Consensus 127 ~~~~~~~~~~~~~~~~~Sa~~~ 148 (164)
T cd04175 127 EQGQNLARQWGCAFLETSAKAK 148 (164)
T ss_pred HHHHHHHHHhCCEEEEeeCCCC
Confidence 3457889999999988653
No 199
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=20.61 E-value=1.4e+02 Score=28.44 Aligned_cols=35 Identities=11% Similarity=0.150 Sum_probs=22.3
Q ss_pred HHHHHHhCC-------CCcEEEEecCCh----------hHHHHHHHc-----CCceE
Q 022279 228 QWIKERFNN-------PNVQFCVIGDGW----------EEGEAAQAM-----QWPFV 262 (300)
Q Consensus 228 erI~~RFgg-------~k~~fvvIGDG~----------eEe~aAk~~-----~~PFw 262 (300)
+.+.+++|| +|.+|+|+|+.. --.+-|+++ ++|.+
T Consensus 241 ~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l~~~g~~i~ii 297 (309)
T PRK06195 241 MILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIKFL 297 (309)
T ss_pred HHHHHHhCCEecCCcccCceEEEECCCcchhhcccCcChHHHHHHHHHhCCCCcEEe
Confidence 445555776 578999999732 123456666 77765
No 200
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=20.53 E-value=90 Score=30.90 Aligned_cols=76 Identities=12% Similarity=0.122 Sum_probs=43.4
Q ss_pred EEEcCCcchHHHHHHHHhhcCcccccCccccccccChh-------------h-------HHHHHHHHhCCCCcEEEEecC
Q 022279 187 ILVTSGSLIPSLVKCLLFRLDNLITHGNVYSSWEVGKL-------------Q-------CFQWIKERFNNPNVQFCVIGD 246 (300)
Q Consensus 187 VLVTs~qLVPaLaK~LLygL~~~fpieNIYSa~kvGKe-------------s-------CFerI~~RFgg~k~~fvvIGD 246 (300)
++++...++-+|++.|. .+|..++. +++.+...+. . =++.|.++-...+ -=++||+
T Consensus 303 ~i~~~~~~~~~l~~~L~-e~G~~v~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~el~~~i~~~~-pdliig~ 378 (428)
T cd01965 303 AIAGDPDLLLGLSRFLL-EMGAEPVA--AVTGTDNPPFEKRMELLASLEGIPAEVVFVGDLWDLESLAKEEP-VDLLIGN 378 (428)
T ss_pred EEEcChHHHHHHHHHHH-HcCCcceE--EEEcCCCchhHHHHHHhhhhcCCCceEEECCCHHHHHHHhhccC-CCEEEEC
Confidence 45566667778898887 77665532 3333322210 0 0123333332111 2267788
Q ss_pred ChhHHHHHHHcCCceEEeecC
Q 022279 247 GWEEGEAAQAMQWPFVKIDLG 267 (300)
Q Consensus 247 G~eEe~aAk~~~~PFwrI~s~ 267 (300)
..+ ...|++++.||.+++.-
T Consensus 379 ~~~-~~~a~~~~ip~i~~~~P 398 (428)
T cd01965 379 SHG-RYLARDLGIPLVRVGFP 398 (428)
T ss_pred chh-HHHHHhcCCCEEEecCC
Confidence 877 55788899999998753
No 201
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=20.51 E-value=2.5e+02 Score=26.13 Aligned_cols=59 Identities=8% Similarity=0.018 Sum_probs=40.5
Q ss_pred cccChhhHHHHHHHHhCCCCcEEEEecCChhHHHHHHHc----CCceEEeecCCCCCCCCCCC
Q 022279 219 WEVGKLQCFQWIKERFNNPNVQFCVIGDGWEEGEAAQAM----QWPFVKIDLGPGSCHRFPGL 277 (300)
Q Consensus 219 ~kvGKesCFerI~~RFgg~k~~fvvIGDG~eEe~aAk~~----~~PFwrI~s~~d~~~~~p~l 277 (300)
.++.|..--++|.+++|-..-.-++|||+..-+.+=+.. +++|.-=+..+....++++.
T Consensus 171 ~g~~Kg~al~~ll~~~~~~~~~v~~~GD~~nD~~mf~~~~~~~g~~vavg~a~~~A~~~l~~~ 233 (266)
T PRK10187 171 RGTNKGEAIAAFMQEAPFAGRTPVFVGDDLTDEAGFAVVNRLGGISVKVGTGATQASWRLAGV 233 (266)
T ss_pred CCCCHHHHHHHHHHhcCCCCCeEEEEcCCccHHHHHHHHHhcCCeEEEECCCCCcCeEeCCCH
Confidence 357899999999999974444567799998777776665 55543323344446677744
No 202
>PF04068 RLI: Possible Fer4-like domain in RNase L inhibitor, RLI; InterPro: IPR007209 This is a possible metal-binding domain in endoribonuclease RNase L inhibitor. It is found at the N-terminal end of RNase L inhibitor proteins, adjacent to the 4Fe-4S binding domain, fer4, IPR001450 from INTERPRO. Also often found adjacent to IPR007177 from INTERPRO in uncharacterised proteins. The RNase L system plays a major role in the anti-viral and anti-proliferative activities of interferons [], and could possibly play a more general role in the regulation of RNA stability in mammalian cells. Inhibitory activity requires concentration-dependent association of RLI with RNase L [].; PDB: 3J16_B 3BK7_A.
Probab=20.41 E-value=62 Score=22.06 Aligned_cols=9 Identities=33% Similarity=1.191 Sum_probs=5.9
Q ss_pred eEEEeeCch
Q 022279 7 KVFIWDMDE 15 (300)
Q Consensus 7 rVFIWDLDE 15 (300)
||+|||.|+
T Consensus 2 rlav~d~~~ 10 (35)
T PF04068_consen 2 RLAVWDFDQ 10 (35)
T ss_dssp EEEEE-CCC
T ss_pred EEEEEEcCC
Confidence 678888775
No 203
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=20.41 E-value=49 Score=31.01 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=20.1
Q ss_pred ceEEEeeCchhhhhHh-hhhhhhhhhhc
Q 022279 6 TKVFIWDMDETLILLK-SLLNGTFAQSF 32 (300)
Q Consensus 6 ~rVFIWDLDETlIif~-SLLtg~yA~~~ 32 (300)
-+..|||||.||+=.. .+..-.+.+.+
T Consensus 40 ~k~VIFDlDGTLvDS~~~~~~~a~~~~l 67 (286)
T PLN02779 40 PEALLFDCDGVLVETERDGHRVAFNDAF 67 (286)
T ss_pred CcEEEEeCceeEEccccHHHHHHHHHHH
Confidence 3678999999999877 77665555444
No 204
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=20.29 E-value=54 Score=30.38 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=19.3
Q ss_pred cceEEEeeCchhhhhHhhhhhhhhhh
Q 022279 5 LTKVFIWDMDETLILLKSLLNGTFAQ 30 (300)
Q Consensus 5 l~rVFIWDLDETlIif~SLLtg~yA~ 30 (300)
+-.+.|||||.||+=........+..
T Consensus 12 ~~k~viFDlDGTL~Ds~~~~~~a~~~ 37 (272)
T PRK13223 12 LPRLVMFDLDGTLVDSVPDLAAAVDR 37 (272)
T ss_pred cCCEEEEcCCCccccCHHHHHHHHHH
Confidence 45689999999999776666655443
No 205
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=20.28 E-value=84 Score=30.35 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=24.7
Q ss_pred HHHHHHHhCC-------CCcEEEEecCChh---HHHHHHHcCCceE
Q 022279 227 FQWIKERFNN-------PNVQFCVIGDGWE---EGEAAQAMQWPFV 262 (300)
Q Consensus 227 FerI~~RFgg-------~k~~fvvIGDG~e---Ee~aAk~~~~PFw 262 (300)
.+.+.++.|| +|.+|+|+||..- -..-|+++|+|.+
T Consensus 251 ~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~~~gi~ii 296 (313)
T PRK06063 251 LVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHARQLGVPVL 296 (313)
T ss_pred HHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHHHcCCccc
Confidence 3445555554 6789999997433 4566888999865
No 206
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=20.28 E-value=1.6e+02 Score=23.49 Aligned_cols=37 Identities=3% Similarity=0.080 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCCCcEEEEecC-------ChhHH-HHHHHcCCceE
Q 022279 226 CFQWIKERFNNPNVQFCVIGD-------GWEEG-EAAQAMQWPFV 262 (300)
Q Consensus 226 CFerI~~RFgg~k~~fvvIGD-------G~eEe-~aAk~~~~PFw 262 (300)
=++++.++|+.+++.++.|.. ..++- +.+++++++|=
T Consensus 44 ~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p 88 (126)
T cd03012 44 YLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYP 88 (126)
T ss_pred HHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCC
Confidence 367888888766777777742 22222 22566777753
No 207
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=20.26 E-value=1.1e+02 Score=26.67 Aligned_cols=55 Identities=16% Similarity=0.262 Sum_probs=30.9
Q ss_pred HHHHHHHh---CCCCcEEEEecCChhHHH---HHHHcC--CceEEeecCC--CCCCCCCCCcccc
Q 022279 227 FQWIKERF---NNPNVQFCVIGDGWEEGE---AAQAMQ--WPFVKIDLGP--GSCHRFPGLSLRT 281 (300)
Q Consensus 227 FerI~~RF---gg~k~~fvvIGDG~eEe~---aAk~~~--~PFwrI~s~~--d~~~~~p~l~~~~ 281 (300)
++.+.+.+ +++++..|.|....++++ ..++++ ||+..+...+ .+...|..-.++|
T Consensus 51 y~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l~~~y~v~~iPt 115 (146)
T cd03008 51 FVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRELEAQFSVEELPT 115 (146)
T ss_pred HHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHHHHHHcCCCCCCE
Confidence 34455555 345688899987766653 356676 6555444322 2445555444444
Done!