Your job contains 1 sequence.
>022280
MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD
LKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE
NLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGP
QTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQ
LLLNVGGPDRVSRVQMAEVDRGVQSPADISMDITKLVQTLNIDPVTYKDGVKLTLAAEAT
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 022280
(300 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
MGI|MGI:1913667 - symbol:Mat2b "methionine adenosyltransf... 219 8.2e-21 2
UNIPROTKB|I3LU04 - symbol:MAT2B "Uncharacterized protein"... 242 1.7e-20 1
UNIPROTKB|Q9NZL9 - symbol:MAT2B "Methionine adenosyltrans... 234 1.2e-19 1
UNIPROTKB|E2RT47 - symbol:MAT2B "Uncharacterized protein"... 231 2.5e-19 1
UNIPROTKB|H7C0X7 - symbol:MAT2B "Methionine adenosyltrans... 229 4.0e-19 1
UNIPROTKB|Q29RI9 - symbol:MAT2B "Methionine adenosyltrans... 226 8.3e-19 1
UNIPROTKB|E1BTX6 - symbol:MAT2B "Uncharacterized protein"... 220 3.8e-18 1
ZFIN|ZDB-GENE-030131-786 - symbol:mat2b "methionine adeno... 220 3.8e-18 1
RGD|1593534 - symbol:Mat2b "methionine adenosyltransferas... 219 1.5e-17 1
UNIPROTKB|Q5U2R0 - symbol:Mat2b "Methionine adenosyltrans... 219 1.5e-17 1
ASPGD|ASPL0000013988 - symbol:AN8032 species:162425 "Emer... 194 9.4e-15 2
TIGR_CMR|SO_4174 - symbol:SO_4174 "NAD dependent epimeras... 200 1.3e-14 1
UNIPROTKB|P55463 - symbol:NGR_a03570 "Probable dTDP-4-deh... 179 7.2e-12 1
UNIPROTKB|Q4K6E9 - symbol:PFL_5105 "Uncharacterized prote... 173 3.3e-11 1
TIGR_CMR|CHY_0978 - symbol:CHY_0978 "dTDP-4-dehydrorhamno... 170 7.7e-11 1
UNIPROTKB|P26392 - symbol:rfbD "dTDP-4-dehydrorhamnose re... 170 1.0e-10 1
TIGR_CMR|BA_1231 - symbol:BA_1231 "dTDP-4-dehydrorhamnose... 149 1.3e-10 2
TIGR_CMR|GSU_2365 - symbol:GSU_2365 "dTDP-4-dehydrorhamno... 168 1.3e-10 1
UNIPROTKB|P37760 - symbol:rfbD "dTDP-4-dehydrorhamnose re... 163 7.3e-10 1
UNIPROTKB|P37778 - symbol:rfbD "dTDP-4-dehydrorhamnose re... 163 7.3e-10 1
DICTYBASE|DDB_G0280135 - symbol:DDB_G0280135 "methionine ... 160 2.2e-09 1
UNIPROTKB|O95455 - symbol:TGDS "dTDP-D-glucose 4,6-dehydr... 155 1.0e-08 1
UNIPROTKB|A0QTF8 - symbol:rmlD "dTDP-4-dehydrorhamnose re... 154 1.1e-08 1
UNIPROTKB|F1RP60 - symbol:TGDS "Uncharacterized protein" ... 153 1.8e-08 1
UNIPROTKB|A6QLW2 - symbol:TGDS "dTDP-D-glucose 4,6-dehydr... 152 2.4e-08 1
ZFIN|ZDB-GENE-030131-5718 - symbol:tgds "TDP-glucose 4,6-... 151 3.0e-08 1
UNIPROTKB|E2QWQ8 - symbol:TGDS "Uncharacterized protein" ... 149 5.4e-08 1
UNIPROTKB|Q46769 - symbol:rfbD "dTDP-4-dehydrorhamnose re... 144 1.3e-07 1
TIGR_CMR|BA_0507 - symbol:BA_0507 "NAD-dependent epimeras... 134 1.5e-07 2
UNIPROTKB|Q74AV3 - symbol:GSU2247 "UDP-2-acetamido-2, 6-d... 143 1.8e-07 1
TIGR_CMR|GSU_2247 - symbol:GSU_2247 "carbohydrate oxidore... 143 1.8e-07 1
MGI|MGI:1923605 - symbol:Tgds "TDP-glucose 4,6-dehydratas... 143 2.7e-07 1
UNIPROTKB|P96871 - symbol:rmlD "dTDP-4-dehydrorhamnose re... 134 4.8e-07 2
TIGR_CMR|GSU_1975 - symbol:GSU_1975 "NAD-dependent epimer... 140 5.2e-07 1
TIGR_CMR|GSU_2240 - symbol:GSU_2240 "UDP-glucose 4-epimer... 138 8.1e-07 1
RGD|1306544 - symbol:Tgds "TDP-glucose 4,6-dehydratase" s... 137 1.3e-06 1
DICTYBASE|DDB_G0276473 - symbol:DDB_G0276473 "NAD-depende... 136 1.8e-06 1
UNIPROTKB|F1P029 - symbol:TGDS "Uncharacterized protein" ... 136 1.8e-06 1
CGD|CAL0000450 - symbol:GAL102 species:5476 "Candida albi... 132 3.9e-06 1
UNIPROTKB|Q59VY4 - symbol:TGD99 "Putative uncharacterized... 132 3.9e-06 1
TIGR_CMR|BA_5505 - symbol:BA_5505 "UDP-glucose 4-epimeras... 127 1.5e-05 1
TIGR_CMR|BA_1230 - symbol:BA_1230 "dTDP-glucose 4,6-dehyd... 126 1.9e-05 1
UNIPROTKB|P29781 - symbol:strL "dTDP-4-dehydrorhamnose re... 124 2.0e-05 2
UNIPROTKB|P27830 - symbol:rffG "dTDP-glucose 4,6-dehydrat... 125 3.0e-05 1
RGD|1583401 - symbol:LOC682491 "similar to methionine ade... 121 4.2e-05 1
UNIPROTKB|Q0BYW6 - symbol:HNE_2639 "UDP-glucuronate 5'-ep... 122 5.9e-05 1
ZFIN|ZDB-GENE-050417-163 - symbol:nsdhl "NAD(P) dependent... 122 6.3e-05 1
SGD|S000002969 - symbol:ERG26 "C-3 sterol dehydrogenase" ... 122 6.4e-05 1
TIGR_CMR|CJE_1273 - symbol:CJE_1273 "UDP-glucose 4-epimer... 120 9.6e-05 1
TIGR_CMR|CJE_1513 - symbol:CJE_1513 "NAD-dependent epimer... 119 0.00012 1
TIGR_CMR|SO_1653 - symbol:SO_1653 "dTDP-4-dehydrorhamnose... 116 0.00027 1
UNIPROTKB|P37761 - symbol:rfbB "dTDP-glucose 4,6-dehydrat... 115 0.00039 1
TIGR_CMR|CHY_0979 - symbol:CHY_0979 "dTDP-glucose 4,6-deh... 113 0.00053 1
SGD|S000000223 - symbol:GAL10 "UDP-glucose-4-epimerase" s... 116 0.00087 1
WB|WBGene00015298 - symbol:C01F1.3 species:6239 "Caenorha... 115 0.00098 1
>MGI|MGI:1913667 [details] [associations]
symbol:Mat2b "methionine adenosyltransferase II, beta"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006556
"S-adenosylmethionine biosynthetic process" evidence=ISO]
[GO:0006730 "one-carbon metabolic process" evidence=IEA]
[GO:0008831 "dTDP-4-dehydrorhamnose reductase activity"
evidence=IEA] [GO:0045226 "extracellular polysaccharide
biosynthetic process" evidence=IEA] [GO:0048269 "methionine
adenosyltransferase complex" evidence=ISO] [GO:0048270 "methionine
adenosyltransferase regulator activity" evidence=ISO] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR005913
Pfam:PF04321 UniPathway:UPA00315 InterPro:IPR016040 MGI:MGI:1913667
GO:GO:0005739 GO:GO:0005634 GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0006730 EMBL:AL646055 CTD:27430 eggNOG:COG1091
GeneTree:ENSGT00390000006721 HOGENOM:HOG000227713
HOVERGEN:HBG105851 KO:K00789 OMA:MTKYQML OrthoDB:EOG4W9J47
GO:GO:0048269 GO:GO:0008831 GO:GO:0048270 GO:GO:0045226
GO:GO:0006556 EMBL:AB070267 EMBL:AK038303 EMBL:AK075947
EMBL:AK162087 EMBL:BC003457 IPI:IPI00468802 IPI:IPI00649402
RefSeq:NP_001186203.1 RefSeq:NP_598778.1 UniGene:Mm.293771
ProteinModelPortal:Q99LB6 SMR:Q99LB6 IntAct:Q99LB6 STRING:Q99LB6
PhosphoSite:Q99LB6 REPRODUCTION-2DPAGE:IPI00649402
REPRODUCTION-2DPAGE:Q99LB6 PaxDb:Q99LB6 PRIDE:Q99LB6
Ensembl:ENSMUST00000040167 Ensembl:ENSMUST00000101347 GeneID:108645
KEGG:mmu:108645 UCSC:uc007ilp.2 UCSC:uc007ilq.2 InParanoid:Q99LB6
NextBio:361155 Bgee:Q99LB6 CleanEx:MM_MAT2B Genevestigator:Q99LB6
Uniprot:Q99LB6
Length = 334
Score = 219 (82.2 bits), Expect = 8.2e-21, Sum P(2) = 8.2e-21
Identities = 55/182 (30%), Positives = 95/182 (52%)
Query: 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGV 135
QP V+V+CAA P V E+ PD+A +NV +S L+ LI++S+D V++G
Sbjct: 86 QPHVIVHCAAERRPDVVESQPDAASQLNVGAS--GNLAKEAAAIGAFLIYISSDYVFDGT 143
Query: 136 KSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWI 195
Y EED +P+N+YGK+K+ EK + E A+LR ++YG + + +S
Sbjct: 144 NPPYTEEDIPSPLNLYGKTKLDGEKAVLENNLGAAVLRIPVLYGE--VEKLEESAVTVMF 201
Query: 196 DSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ 255
D V + H + R P +V+DV + L + + D ++ + G +++++ +
Sbjct: 202 DKVQFSNKSANMDHWQQRFPTHVKDVASVCRQLAEKRML-DPSIKGTFHWSGNEQMTKYE 260
Query: 256 MA 257
MA
Sbjct: 261 MA 262
Score = 50 (22.7 bits), Expect = 8.2e-21, Sum P(2) = 8.2e-21
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 262 GVQSPADISMDITKLVQTLNIDPVT-YKDGVKLTL 295
G Q P + +D +KL +TL I T ++ G+K +L
Sbjct: 286 GAQRPKNAQLDCSKL-ETLGIGQRTPFRTGIKESL 319
>UNIPROTKB|I3LU04 [details] [associations]
symbol:MAT2B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048270 "methionine adenosyltransferase regulator
activity" evidence=IEA] [GO:0048269 "methionine adenosyltransferase
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0045226 "extracellular
polysaccharide biosynthetic process" evidence=IEA] [GO:0008831
"dTDP-4-dehydrorhamnose reductase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR005913
Pfam:PF04321 InterPro:IPR016040 GO:GO:0005739 GO:GO:0005634
GO:GO:0000166 Gene3D:3.40.50.720 GeneTree:ENSGT00390000006721
OMA:MTKYQML GO:GO:0048269 GO:GO:0008831 GO:GO:0048270 GO:GO:0045226
EMBL:CU571276 Ensembl:ENSSSCT00000025011 Uniprot:I3LU04
Length = 325
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 71/254 (27%), Positives = 120/254 (47%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
+RVL+ G TG LG+ + + E + + P+ F V+L
Sbjct: 29 RRVLITGATGLLGRAVYK---EFQQNNWHAVGCGFRRARPK-----------FEQVNLLD 74
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
+ + F QP V+V+CAA P V EN PD+A +NV +S N L
Sbjct: 75 SNAVHHIIYDF-QPHVIVHCAAERRPDVVENQPDAASQLNVDAS-GNLAKEAVAAIGAFL 132
Query: 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
I++STD V++G Y+EED +P+N+YGK+K+ EK + E A+LR ++YG +
Sbjct: 133 IYISTDYVFDGKNPPYREEDMPSPLNLYGKTKLEGEKAVLENNLGAAVLRIPVLYGE--V 190
Query: 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243
+ +S D V + H + R P +V+DV + L + + D ++
Sbjct: 191 EKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRML-DPSIKGTF 249
Query: 244 NVGGPDRVSRVQMA 257
+ G +++++ +MA
Sbjct: 250 HWSGNEQMTKYEMA 263
>UNIPROTKB|Q9NZL9 [details] [associations]
symbol:MAT2B "Methionine adenosyltransferase 2 subunit
beta" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008831 "dTDP-4-dehydrorhamnose reductase
activity" evidence=IEA] [GO:0045226 "extracellular polysaccharide
biosynthetic process" evidence=IEA] [GO:0006730 "one-carbon
metabolic process" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0006556 "S-adenosylmethionine biosynthetic
process" evidence=IEA;IDA] [GO:0048270 "methionine
adenosyltransferase regulator activity" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005622 "intracellular"
evidence=IC] [GO:0048269 "methionine adenosyltransferase complex"
evidence=IDA] [GO:0000096 "sulfur amino acid metabolic process"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006805
"xenobiotic metabolic process" evidence=TAS] [GO:0032259
"methylation" evidence=TAS] [GO:0034641 "cellular nitrogen compound
metabolic process" evidence=TAS] [GO:0044281 "small molecule
metabolic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] Reactome:REACT_111217 InterPro:IPR005913 Pfam:PF04321
UniPathway:UPA00315 InterPro:IPR016040 GO:GO:0005829 GO:GO:0005739
GO:GO:0005634 EMBL:CH471062 GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0006805 GO:GO:0032259 GO:GO:0006730 DrugBank:DB00134
GO:GO:0000096 DrugBank:DB00118 CTD:27430 eggNOG:COG1091
HOVERGEN:HBG105851 KO:K00789 GO:GO:0048269 GO:GO:0008831
GO:GO:0048270 GO:GO:0045226 GO:GO:0006556 EMBL:AF182814
EMBL:AJ243721 EMBL:DQ395260 EMBL:DQ413183 EMBL:AL136664
EMBL:AB073390 EMBL:AY358695 EMBL:AK312365 EMBL:BC005218
EMBL:BC066645 EMBL:BC093030 EMBL:AF113225 IPI:IPI00002324
IPI:IPI00181717 IPI:IPI00845294 IPI:IPI00845444 IPI:IPI00845510
RefSeq:NP_037415.1 RefSeq:NP_877725.1 UniGene:Hs.54642 PDB:2YDX
PDB:2YDY PDBsum:2YDX PDBsum:2YDY ProteinModelPortal:Q9NZL9
SMR:Q9NZL9 STRING:Q9NZL9 PhosphoSite:Q9NZL9 DMDM:74719662
REPRODUCTION-2DPAGE:IPI00002324 PaxDb:Q9NZL9 PRIDE:Q9NZL9
DNASU:27430 Ensembl:ENST00000280969 Ensembl:ENST00000321757
Ensembl:ENST00000518095 GeneID:27430 KEGG:hsa:27430 UCSC:uc003lzj.3
UCSC:uc003lzk.3 UCSC:uc003lzl.1 GeneCards:GC05P162930
HGNC:HGNC:6905 HPA:HPA037721 HPA:HPA037722 MIM:605527
neXtProt:NX_Q9NZL9 PharmGKB:PA30648 InParanoid:Q9NZL9 OMA:SPTYTKD
PhylomeDB:Q9NZL9 BRENDA:2.5.1.6 ChiTaRS:MAT2B
EvolutionaryTrace:Q9NZL9 GenomeRNAi:27430 NextBio:50469
ArrayExpress:Q9NZL9 Bgee:Q9NZL9 Genevestigator:Q9NZL9
Uniprot:Q9NZL9
Length = 334
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 62/202 (30%), Positives = 103/202 (50%)
Query: 56 FFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSF 115
F V+L + + F QP V+V+CAA P V EN PD+A +NV +S L+
Sbjct: 67 FEQVNLLDSNAVHHIIHDF-QPHVIVHCAAERRPDVVENQPDAASQLNVDAS--GNLAKE 123
Query: 116 TENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSS 175
LI++S+D V++G Y+EED AP+N+YGK+K+ EK + E A+LR
Sbjct: 124 AAAVGAFLIYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGAAVLRIP 183
Query: 176 IIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSE 235
I+YG + + +S D V + H + R P +V+DV + L + +
Sbjct: 184 ILYGE--VEKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRML- 240
Query: 236 DKQMQLLLNVGGPDRVSRVQMA 257
D ++ + G +++++ +MA
Sbjct: 241 DPSIKGTFHWSGNEQMTKYEMA 262
>UNIPROTKB|E2RT47 [details] [associations]
symbol:MAT2B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048270 "methionine adenosyltransferase
regulator activity" evidence=IEA] [GO:0048269 "methionine
adenosyltransferase complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0045226 "extracellular polysaccharide biosynthetic process"
evidence=IEA] [GO:0008831 "dTDP-4-dehydrorhamnose reductase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR005913 Pfam:PF04321 InterPro:IPR016040
GO:GO:0005739 GO:GO:0005634 GO:GO:0000166 Gene3D:3.40.50.720
CTD:27430 GeneTree:ENSGT00390000006721 KO:K00789 OMA:MTKYQML
GO:GO:0048269 GO:GO:0008831 GO:GO:0048270 GO:GO:0045226
EMBL:AAEX03003040 RefSeq:XP_003434556.1 ProteinModelPortal:E2RT47
Ensembl:ENSCAFT00000027206 GeneID:479301 KEGG:cfa:479301
NextBio:20854500 Uniprot:E2RT47
Length = 334
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 75/260 (28%), Positives = 124/260 (47%)
Query: 56 FFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSF 115
F V+L + F QP V+V+CAA P V EN PD+A +NV +S L+
Sbjct: 67 FEQVNLLDSEAVHHIIHDF-QPHVIVHCAAERRPDVVENQPDAASQLNVDAS--GNLAKE 123
Query: 116 TENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSS 175
LI++S+D V++G Y+EED +P+N+YGK+K+ EK + E A+LR
Sbjct: 124 AALIGAFLIYISSDYVFDGTNPPYREEDVPSPLNLYGKTKLEGEKAVLENNLGAAVLRIP 183
Query: 176 IIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSE 235
++YG + + +S D V + H + R P +V+DV + L + +
Sbjct: 184 VLYGE--VEKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRML- 240
Query: 236 DKQMQLLLNVGGPDRVSRVQMA--EVDR-----------------GVQSPADISMDITKL 276
D ++ + G +++++ +MA D G Q P + +D TKL
Sbjct: 241 DPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCTKL 300
Query: 277 VQTLNIDPVT-YKDGVKLTL 295
+TL I T ++ G+K +L
Sbjct: 301 -ETLGIGQRTPFRIGIKESL 319
>UNIPROTKB|H7C0X7 [details] [associations]
symbol:MAT2B "Methionine adenosyltransferase 2 subunit
beta" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008831 "dTDP-4-dehydrorhamnose reductase
activity" evidence=IEA] [GO:0045226 "extracellular polysaccharide
biosynthetic process" evidence=IEA] InterPro:IPR005913 Pfam:PF04321
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 EMBL:AC112205
GO:GO:0008831 GO:GO:0045226 HGNC:HGNC:6905 ChiTaRS:MAT2B
ProteinModelPortal:H7C0X7 SMR:H7C0X7 Ensembl:ENST00000421814
Bgee:H7C0X7 Uniprot:H7C0X7
Length = 198
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 57/182 (31%), Positives = 96/182 (52%)
Query: 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGV 135
+P V+V+CAA P V EN PD+A +NV +S L+ LI++S+D V++G
Sbjct: 21 EPHVIVHCAAERRPDVVENQPDAASQLNVDAS--GNLAKEAAAVGAFLIYISSDYVFDGT 78
Query: 136 KSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWI 195
Y+EED AP+N+YGK+K+ EK + E A+LR I+YG + + +S
Sbjct: 79 NPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGAAVLRIPILYGE--VEKLEESAVTVMF 136
Query: 196 DSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ 255
D V + H + R P +V+DV + L + + D ++ + G +++++ +
Sbjct: 137 DKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRML-DPSIKGTFHWSGNEQMTKYE 195
Query: 256 MA 257
MA
Sbjct: 196 MA 197
>UNIPROTKB|Q29RI9 [details] [associations]
symbol:MAT2B "Methionine adenosyltransferase 2 subunit
beta" species:9913 "Bos taurus" [GO:0006556 "S-adenosylmethionine
biosynthetic process" evidence=IEA] [GO:0048270 "methionine
adenosyltransferase regulator activity" evidence=IEA] [GO:0048269
"methionine adenosyltransferase complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006730 "one-carbon metabolic process" evidence=IEA]
[GO:0045226 "extracellular polysaccharide biosynthetic process"
evidence=IEA] [GO:0008831 "dTDP-4-dehydrorhamnose reductase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR005913 Pfam:PF04321 UniPathway:UPA00315
InterPro:IPR016040 GO:GO:0005739 GO:GO:0005634 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0006730 EMBL:BC114151 IPI:IPI00711397
RefSeq:NP_001039991.1 UniGene:Bt.2109 ProteinModelPortal:Q29RI9
STRING:Q29RI9 PRIDE:Q29RI9 Ensembl:ENSBTAT00000016399 GeneID:614177
KEGG:bta:614177 CTD:27430 eggNOG:COG1091
GeneTree:ENSGT00390000006721 HOGENOM:HOG000227713
HOVERGEN:HBG105851 InParanoid:Q29RI9 KO:K00789 OMA:MTKYQML
OrthoDB:EOG4W9J47 NextBio:20898979 GO:GO:0048269 GO:GO:0008831
GO:GO:0048270 GO:GO:0045226 GO:GO:0006556 Uniprot:Q29RI9
Length = 334
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 60/202 (29%), Positives = 102/202 (50%)
Query: 56 FFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSF 115
F V+L + + F QP V+V+CAA P V EN PD+A +NV +S L+
Sbjct: 67 FEQVNLLDSNAVHHIIYDF-QPHVIVHCAAERRPDVVENHPDAASQLNVDAS--GNLAKE 123
Query: 116 TENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSS 175
LI++S+D V++G Y+EED P+N+YGK+K+ EK + E A+LR
Sbjct: 124 AAAIGAFLIYISSDYVFDGTNPPYREEDIPNPLNLYGKTKLEGEKAVLENNLGAAVLRIP 183
Query: 176 IIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSE 235
++YG + + +S D V + H + R P +V+DV + L + +
Sbjct: 184 VLYGE--VERLEESAVTIMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRML- 240
Query: 236 DKQMQLLLNVGGPDRVSRVQMA 257
D ++ + G +++++ +MA
Sbjct: 241 DPSIKGTFHWSGNEQMTKYEMA 262
>UNIPROTKB|E1BTX6 [details] [associations]
symbol:MAT2B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008831
"dTDP-4-dehydrorhamnose reductase activity" evidence=IEA]
[GO:0045226 "extracellular polysaccharide biosynthetic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0048269 "methionine
adenosyltransferase complex" evidence=IEA] [GO:0048270 "methionine
adenosyltransferase regulator activity" evidence=IEA]
InterPro:IPR005913 Pfam:PF04321 InterPro:IPR016040 GO:GO:0005739
GO:GO:0005634 GO:GO:0000166 Gene3D:3.40.50.720
GeneTree:ENSGT00390000006721 OMA:MTKYQML GO:GO:0048269
GO:GO:0008831 GO:GO:0048270 GO:GO:0045226 EMBL:AADN02035885
EMBL:AADN02035886 EMBL:AADN02035887 IPI:IPI00595304
ProteinModelPortal:E1BTX6 Ensembl:ENSGALT00000002683
NextBio:20819668 Uniprot:E1BTX6
Length = 334
Score = 220 (82.5 bits), Expect = 3.8e-18, P = 3.8e-18
Identities = 56/182 (30%), Positives = 93/182 (51%)
Query: 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGV 135
QP V+V+CAA P V E+ PD+A +NV +S L+ LI++STD V++G
Sbjct: 86 QPHVIVHCAAERRPDVVESQPDAASQLNVAAS--GNLAKEAAGIGAFLIYISTDYVFDGT 143
Query: 136 KSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWI 195
YKE D P+N+YGK+K+ EK + E A+LR ++YG + + +S
Sbjct: 144 SPPYKETDVPNPLNLYGKTKLEGEKAVLENNEGAAVLRIPVLYGE--VERLEESAVTVMF 201
Query: 196 DSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ 255
D V + H + R P V+DV + L + + D ++ + G +++++ +
Sbjct: 202 DKVQFSNKSANMDHWQQRFPTNVKDVAVVCRQLAEKRML-DPSIKGTFHWSGNEQMTKYE 260
Query: 256 MA 257
MA
Sbjct: 261 MA 262
>ZFIN|ZDB-GENE-030131-786 [details] [associations]
symbol:mat2b "methionine adenosyltransferase II,
beta" species:7955 "Danio rerio" [GO:0045226 "extracellular
polysaccharide biosynthetic process" evidence=IEA] [GO:0008831
"dTDP-4-dehydrorhamnose reductase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006730
"one-carbon metabolic process" evidence=IEA] InterPro:IPR005913
Pfam:PF04321 InterPro:IPR016040 ZFIN:ZDB-GENE-030131-786
GO:GO:0000166 Gene3D:3.40.50.720 GeneTree:ENSGT00390000006721
GO:GO:0008831 GO:GO:0045226 EMBL:BX927388 IPI:IPI00852201
PRIDE:E9QCP2 Ensembl:ENSDART00000135659 ArrayExpress:E9QCP2
Bgee:E9QCP2 Uniprot:E9QCP2
Length = 334
Score = 220 (82.5 bits), Expect = 3.8e-18, P = 3.8e-18
Identities = 60/201 (29%), Positives = 100/201 (49%)
Query: 56 FFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSF 115
F +L V +F QP V+V+CAA P V E ++AM++NV + L+
Sbjct: 67 FLKCNLLDEDAVRGVIQRF-QPHVIVHCAAERRPDVVERHTEAAMNLNVHACAT--LAK- 122
Query: 116 TENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSS 175
E + LI++STD V++G Y E D P+N+YGKSK+ E+ I C AILR
Sbjct: 123 -EAGGSFLIYISTDYVFDGRNPPYGENDAPNPLNLYGKSKLEGEREILRHCPGAAILRVP 181
Query: 176 IIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSE 235
I++G + V +S + V E H + R P Y DV ++ + R L +
Sbjct: 182 ILFGE--VEKVEESAVTVLFERVQEGAESCTIDHCQQRFPTYTNDVARVCRNMAERAL-Q 238
Query: 236 DKQMQLLLNVGGPDRVSRVQM 256
D+ ++ + + +++++ +M
Sbjct: 239 DQSLRGIFHYSAKEQMTKYEM 259
>RGD|1593534 [details] [associations]
symbol:Mat2b "methionine adenosyltransferase II, beta"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005739
"mitochondrion" evidence=ISO] [GO:0006556 "S-adenosylmethionine
biosynthetic process" evidence=IEA;ISO] [GO:0006730 "one-carbon
metabolic process" evidence=IEA] [GO:0008831
"dTDP-4-dehydrorhamnose reductase activity" evidence=IEA]
[GO:0045226 "extracellular polysaccharide biosynthetic process"
evidence=IEA] [GO:0048269 "methionine adenosyltransferase complex"
evidence=ISO] [GO:0048270 "methionine adenosyltransferase regulator
activity" evidence=ISO] InterPro:IPR005913 Pfam:PF04321
UniPathway:UPA00315 InterPro:IPR016040 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0006730 CTD:27430 eggNOG:COG1091
HOGENOM:HOG000227713 HOVERGEN:HBG105851 KO:K00789 OrthoDB:EOG4W9J47
GO:GO:0008831 GO:GO:0045226 GO:GO:0006556 EMBL:BC085899
IPI:IPI00198904 RefSeq:NP_001037747.1 UniGene:Rn.1752
ProteinModelPortal:Q5U2R0 STRING:Q5U2R0 PRIDE:Q5U2R0 GeneID:683630
KEGG:rno:683630 RGD:1584521 InParanoid:Q5U2R0 SABIO-RK:Q5U2R0
NextBio:725565 ArrayExpress:Q5U2R0 Genevestigator:Q5U2R0
Uniprot:Q5U2R0
Length = 334
Score = 219 (82.2 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 55/182 (30%), Positives = 95/182 (52%)
Query: 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGV 135
QP V+V+CAA P V E+ PD+A +NV +S L+ LI++S+D V++G
Sbjct: 86 QPHVIVHCAAERRPDVVESQPDAASQLNVGAS--GNLAKEAAAIGAFLIYISSDYVFDGT 143
Query: 136 KSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWI 195
Y EED +P+N+YGK+K+ EK + E A+LR ++YG + + +S
Sbjct: 144 NPPYTEEDIPSPLNLYGKTKLDGEKAVLENNLGAAVLRIPVLYGE--VEKLEESAVTVMF 201
Query: 196 DSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ 255
D V + H + R P +V+DV + L + + D ++ + G +++++ +
Sbjct: 202 DKVQFSNKSANMDHWQQRFPTHVKDVASVCRQLAEKRML-DPSIKGTFHWSGNEQMTKYE 260
Query: 256 MA 257
MA
Sbjct: 261 MA 262
>UNIPROTKB|Q5U2R0 [details] [associations]
symbol:Mat2b "Methionine adenosyltransferase 2 subunit
beta" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008831 "dTDP-4-dehydrorhamnose
reductase activity" evidence=IEA] [GO:0045226 "extracellular
polysaccharide biosynthetic process" evidence=IEA]
InterPro:IPR005913 Pfam:PF04321 UniPathway:UPA00315
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0006730
CTD:27430 eggNOG:COG1091 HOGENOM:HOG000227713 HOVERGEN:HBG105851
KO:K00789 OrthoDB:EOG4W9J47 GO:GO:0008831 GO:GO:0045226
GO:GO:0006556 EMBL:BC085899 IPI:IPI00198904 RefSeq:NP_001037747.1
UniGene:Rn.1752 ProteinModelPortal:Q5U2R0 STRING:Q5U2R0
PRIDE:Q5U2R0 GeneID:683630 KEGG:rno:683630 RGD:1584521
InParanoid:Q5U2R0 SABIO-RK:Q5U2R0 NextBio:725565
ArrayExpress:Q5U2R0 Genevestigator:Q5U2R0 Uniprot:Q5U2R0
Length = 334
Score = 219 (82.2 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 55/182 (30%), Positives = 95/182 (52%)
Query: 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGV 135
QP V+V+CAA P V E+ PD+A +NV +S L+ LI++S+D V++G
Sbjct: 86 QPHVIVHCAAERRPDVVESQPDAASQLNVGAS--GNLAKEAAAIGAFLIYISSDYVFDGT 143
Query: 136 KSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWI 195
Y EED +P+N+YGK+K+ EK + E A+LR ++YG + + +S
Sbjct: 144 NPPYTEEDIPSPLNLYGKTKLDGEKAVLENNLGAAVLRIPVLYGE--VEKLEESAVTVMF 201
Query: 196 DSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ 255
D V + H + R P +V+DV + L + + D ++ + G +++++ +
Sbjct: 202 DKVQFSNKSANMDHWQQRFPTHVKDVASVCRQLAEKRML-DPSIKGTFHWSGNEQMTKYE 260
Query: 256 MA 257
MA
Sbjct: 261 MA 262
>ASPGD|ASPL0000013988 [details] [associations]
symbol:AN8032 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008831
"dTDP-4-dehydrorhamnose reductase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045226
"extracellular polysaccharide biosynthetic process" evidence=IEA]
InterPro:IPR005913 Pfam:PF04321 InterPro:IPR016040 GO:GO:0000166
Gene3D:3.40.50.720 EMBL:BN001302 EMBL:AACD01000139 eggNOG:COG1091
HOGENOM:HOG000227713 OMA:MTKYQML GO:GO:0008831 GO:GO:0045226
RefSeq:XP_681301.1 ProteinModelPortal:Q5AUJ8 STRING:Q5AUJ8
EnsemblFungi:CADANIAT00004052 GeneID:2869288 KEGG:ani:AN8032.2
OrthoDB:EOG45B4QQ Uniprot:Q5AUJ8
Length = 314
Score = 194 (73.4 bits), Expect = 9.4e-15, Sum P(2) = 9.4e-15
Identities = 57/194 (29%), Positives = 101/194 (52%)
Query: 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGV 135
+P +V++CAA P +C+ DP+ A +NV ++ L+ T + LL+++STD V+ GV
Sbjct: 61 KPQIVIHCAANRSPDLCDKDPERARRVNVDATRT--LAELTAERNILLVYISTDYVFPGV 118
Query: 136 KSF--YKEEDEIAPVNVYGKSKVAAEKFIYE--KCSNFAI-LRSSIIYGPQTISPVPKSL 190
+ Y+ + P N+YG+ K E+ + E K S I LR ++YG T + +S
Sbjct: 119 EGEAPYEADAPTKPPNLYGELKRDGEQVVLEATKKSGMGIILRVPVLYG--TANENSESA 176
Query: 191 PIQWIDSVL-SKGEKVEFFHDEC--RCPVYVRDVVKIILALTNRWLSEDKQ-MQL--LLN 244
+DSV ++ E D+ R P DV +++ + ++L E Q M+L +L
Sbjct: 177 VNTLVDSVWKAQDENAGIKMDDWAQRYPTNTEDVARVLRDIVIKYLKERGQIMKLPKILQ 236
Query: 245 VGGPDRVSRVQMAE 258
D++++ +M E
Sbjct: 237 FSSEDKMTKYEMCE 250
Score = 40 (19.1 bits), Expect = 9.4e-15, Sum P(2) = 9.4e-15
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 6 VLVVGGTGYLGQHL 19
VLV G TG LG+ +
Sbjct: 5 VLVTGATGLLGRQV 18
>TIGR_CMR|SO_4174 [details] [associations]
symbol:SO_4174 "NAD dependent epimerase/dehydratase family
protein" species:211586 "Shewanella oneidensis MR-1" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0009243 "O antigen
biosynthetic process" evidence=ISS] InterPro:IPR005913 Pfam:PF04321
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 EMBL:AE014299
GenomeReviews:AE014299_GR HOGENOM:HOG000227713 OMA:MTKYQML
GO:GO:0008831 GO:GO:0045226 RefSeq:NP_719703.1
ProteinModelPortal:Q8E9T9 GeneID:1171780 KEGG:son:SO_4174
PATRIC:23527976 ProtClustDB:CLSK907528 Uniprot:Q8E9T9
Length = 306
Score = 200 (75.5 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 56/199 (28%), Positives = 101/199 (50%)
Query: 59 VDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN 118
+DL +A + +P+V+V+CAA P V E P+ A+++N+ +S L+ +
Sbjct: 43 LDLTQAIAVEAFIAR-ERPEVIVHCAAERRPDVSEQSPEQALALNLSASQT--LAKAAKQ 99
Query: 119 KENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIY 178
L+++STD V++G Y E+ PVN YG+SK+ E + S FA+LR I+Y
Sbjct: 100 HGAWLLYISTDYVFDGTTPPYAEDAAPNPVNFYGESKLQGETCVLNTDSRFAVLRLPILY 159
Query: 179 GPQTISPVPKSLPIQWIDSVL-SKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDK 237
G ++ + +S + I+ +L S+ ++V+ + R P D+ I L R L
Sbjct: 160 GE--VTQLSESAVLVLINQLLDSRPQRVDAW--AIRSPTSTADIAGAIAKLIKRQLHAAD 215
Query: 238 QMQLLLNVGGPDRVSRVQM 256
+ + + P +++ QM
Sbjct: 216 VLGIY-HFSSPQTMTKYQM 233
>UNIPROTKB|P55463 [details] [associations]
symbol:NGR_a03570 "Probable dTDP-4-dehydrorhamnose
reductase" species:394 "Sinorhizobium fredii NGR234" [GO:0008831
"dTDP-4-dehydrorhamnose reductase activity" evidence=ISS]
[GO:0045226 "extracellular polysaccharide biosynthetic process"
evidence=ISS] InterPro:IPR005913 Pfam:PF04321 UniPathway:UPA00124
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 eggNOG:COG1091
GO:GO:0008831 GO:GO:0045226 OMA:SPTYTKD EMBL:U00090
GenomeReviews:U00090_GR GO:GO:0019305 HOGENOM:HOG000227712
KO:K00067 TIGRFAMs:TIGR01214 RefSeq:NP_443869.1
ProteinModelPortal:P55463 STRING:P55463 GeneID:962163
KEGG:rhi:NGR_a03570 PATRIC:32301459 ProtClustDB:CLSK513391
Uniprot:P55463
Length = 296
Score = 179 (68.1 bits), Expect = 7.2e-12, P = 7.2e-12
Identities = 52/192 (27%), Positives = 91/192 (47%)
Query: 69 AVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLST 128
A +++ PD++V+ AA + E++P A ++N V L+ +IHLST
Sbjct: 43 ASSIRDAAPDIIVSLAAYTAVDKAESEPYEAFAVNRDG--VQALAEAAAGLGVPVIHLST 100
Query: 129 DQVYEGVKSF-YKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVP 187
D V++G K Y EED P++VYG+SK+ E + N ILR+S +Y + V
Sbjct: 101 DYVFDGAKPVPYCEEDRTGPISVYGRSKLEGEFAVASANPNHTILRTSWVYSRYGQNFVK 160
Query: 188 KSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDK-QMQLLLNVG 246
K L + D+ +++ D+ CP D+ ++ + R LS ++ + ++
Sbjct: 161 KMLRLA--DT----NDELNVVADQLGCPTSADDISVAVMTIARRMLSSSSADLRGIFHLS 214
Query: 247 GPDRVSRVQMAE 258
G S A+
Sbjct: 215 GSGEASWAAFAK 226
>UNIPROTKB|Q4K6E9 [details] [associations]
symbol:PFL_5105 "Uncharacterized protein" species:220664
"Pseudomonas protegens Pf-5" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR005913
Pfam:PF04321 InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720
EMBL:CP000076 GenomeReviews:CP000076_GR eggNOG:COG1091
GO:GO:0008831 GO:GO:0045226 KO:K00067 RefSeq:YP_262184.1
ProteinModelPortal:Q4K6E9 STRING:Q4K6E9 GeneID:3479509
KEGG:pfl:PFL_5105 HOGENOM:HOG000224133 OMA:ESDFPDC
ProtClustDB:CLSK2464156 BioCyc:PFLU220664:GIX8-5146-MONOMER
Uniprot:Q4K6E9
Length = 285
Score = 173 (66.0 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 58/173 (33%), Positives = 84/173 (48%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64
+VLV+G TG LGQ + + S G +D T S + + HS + VD+
Sbjct: 2 KVLVLGVTGMLGQAVFRVFSSDTG--HDTWGTLRSPSALRYFAETY-HSHLITGVDVLDQ 58
Query: 65 SGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLI 124
V K +PDVV+NC L NDP +A+ IN + L + L+ LI
Sbjct: 59 DALATVLAKV-RPDVVINCVGLIKQLADANDPLTALPIN--AMLPHRLARLCALAHARLI 115
Query: 125 HLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSII 177
H+STD V+ G K Y E D ++YGKSK E ++++ + LR+SII
Sbjct: 116 HVSTDCVFSGNKGGYLESDISDAEDLYGKSKYIGE--LHDE-PHAITLRTSII 165
>TIGR_CMR|CHY_0978 [details] [associations]
symbol:CHY_0978 "dTDP-4-dehydrorhamnose reductase"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008831 "dTDP-4-dehydrorhamnose reductase activity"
evidence=ISS] [GO:0009243 "O antigen biosynthetic process"
evidence=ISS] [GO:0019305 "dTDP-rhamnose biosynthetic process"
evidence=ISS] InterPro:IPR005913 Pfam:PF04321 InterPro:IPR016040
GO:GO:0000166 Gene3D:3.40.50.720 EMBL:CP000141
GenomeReviews:CP000141_GR eggNOG:COG1091 GO:GO:0008831
GO:GO:0045226 OMA:SPTYTKD KO:K00067 TIGRFAMs:TIGR01214
HOGENOM:HOG000227711 RefSeq:YP_359825.1 ProteinModelPortal:Q3ADF9
STRING:Q3ADF9 GeneID:3727962 KEGG:chy:CHY_0978 PATRIC:21275089
BioCyc:CHYD246194:GJCN-977-MONOMER Uniprot:Q3ADF9
Length = 283
Score = 170 (64.9 bits), Expect = 7.7e-11, P = 7.7e-11
Identities = 46/158 (29%), Positives = 77/158 (48%)
Query: 72 LKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQV 131
L F +P ++NCAA + E + + A+ +N + ++ + + +IH STD V
Sbjct: 49 LNF-RPQYLINCAAYNEVDKAEEEKEKALLVN--GIALRYIGNLAAQYQTTVIHYSTDYV 105
Query: 132 YEGVKSF-YKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSL 190
+ G K Y D+ P+N YG++K+ EK I ++R S ++G + + K L
Sbjct: 106 FNGEKEEPYLISDQPKPINHYGRTKLLGEKEILTHNPKTYVIRVSWVFGDGEQNFIYKLL 165
Query: 191 PIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILAL 228
W SK EK++ D+ P Y ++VKI L L
Sbjct: 166 --NWA----SKNEKLKIVADQVSSPTYTEEIVKITLDL 197
>UNIPROTKB|P26392 [details] [associations]
symbol:rfbD "dTDP-4-dehydrorhamnose reductase"
species:99287 "Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2" [GO:0008831 "dTDP-4-dehydrorhamnose reductase
activity" evidence=IDA] [GO:0009103 "lipopolysaccharide
biosynthetic process" evidence=IDA] [GO:0045226 "extracellular
polysaccharide biosynthetic process" evidence=IDA]
InterPro:IPR005913 Pfam:PF04321 UniPathway:UPA00124
UniPathway:UPA00281 InterPro:IPR016040 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0046872 EMBL:AE006468 EMBL:X56793
GenomeReviews:AE006468_GR GO:GO:0009103 eggNOG:COG1091
GO:GO:0008831 GO:GO:0045226 GO:GO:0009243 GO:GO:0019305
HOGENOM:HOG000227712 KO:K00067 ProtClustDB:PRK09987
TIGRFAMs:TIGR01214 PIR:S15300 RefSeq:NP_461041.1 PDB:1KBZ PDB:1KC1
PDB:1KC3 PDB:1N2S PDBsum:1KBZ PDBsum:1KC1 PDBsum:1KC3 PDBsum:1N2S
ProteinModelPortal:P26392 SMR:P26392 PRIDE:P26392 GeneID:1253617
KEGG:stm:STM2096 PATRIC:32382775 OMA:ETHWHAY SABIO-RK:P26392
EvolutionaryTrace:P26392 Uniprot:P26392
Length = 299
Score = 170 (64.9 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 46/140 (32%), Positives = 71/140 (50%)
Query: 41 PLPQLL-LDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSA 99
P+ L+ LD HS F D + G K +PDV+VN AA + E++P+ A
Sbjct: 22 PVGNLIALDV--HSKEFCG-DFSNPKGVAETVRKL-RPDVIVNAAAHTAVDKAESEPELA 77
Query: 100 MSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSF-YKEEDEIAPVNVYGKSKVAA 158
+N S V ++ ++H STD V+ G ++E D +P+NVYGK+K+A
Sbjct: 78 QLLNATS--VEAIAKAANETGAWVVHYSTDYVFPGTGDIPWQETDATSPLNVYGKTKLAG 135
Query: 159 EKFIYEKCSNFAILRSSIIY 178
EK + + C I R+S +Y
Sbjct: 136 EKALQDNCPKHLIFRTSWVY 155
>TIGR_CMR|BA_1231 [details] [associations]
symbol:BA_1231 "dTDP-4-dehydrorhamnose reductase"
species:198094 "Bacillus anthracis str. Ames" [GO:0008831
"dTDP-4-dehydrorhamnose reductase activity" evidence=ISS]
[GO:0009243 "O antigen biosynthetic process" evidence=ISS]
[GO:0019305 "dTDP-rhamnose biosynthetic process" evidence=ISS]
InterPro:IPR005913 Pfam:PF04321 InterPro:IPR016040 GO:GO:0000166
Gene3D:3.40.50.720 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0008831 GO:GO:0045226 KO:K00067
TIGRFAMs:TIGR01214 HOGENOM:HOG000227711 OMA:ETHWHAY
RefSeq:NP_843703.1 RefSeq:YP_017845.1 RefSeq:YP_027410.1 PDB:3SC6
PDBsum:3SC6 ProteinModelPortal:Q81TN9 IntAct:Q81TN9 DNASU:1087655
EnsemblBacteria:EBBACT00000012169 EnsemblBacteria:EBBACT00000017132
EnsemblBacteria:EBBACT00000023236 GeneID:1087655 GeneID:2817044
GeneID:2848637 KEGG:ban:BA_1231 KEGG:bar:GBAA_1231 KEGG:bat:BAS1138
ProtClustDB:CLSK916142 BioCyc:BANT260799:GJAJ-1214-MONOMER
BioCyc:BANT261594:GJ7F-1268-MONOMER Uniprot:Q81TN9
Length = 284
Score = 149 (57.5 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 43/148 (29%), Positives = 75/148 (50%)
Query: 76 QPDVVVNCAALSVPRVCENDPDSAMSIN-VPSSLVNWLSSFTENKENLLIHLSTDQVYEG 134
+P ++++CAA + E + D A IN + + V S K L+++STD V++G
Sbjct: 53 RPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGAK---LVYISTDYVFQG 109
Query: 135 VK-SFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQ 193
+ Y E AP+N+YG SK A E+F+ E + + I+R+S +YG + V + +
Sbjct: 110 DRPEGYDEFHNPAPINIYGASKYAGEQFVKELHNKYFIVRTSWLYGKYGNNFVKTMIRLG 169
Query: 194 WIDSVLSKGEKVEFFHDECRCPVYVRDV 221
+ E++ D+ P YV D+
Sbjct: 170 ------KEREEISVVADQIGSPTYVADL 191
Score = 57 (25.1 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLS--EIEGKPYD--VAATHHSTPLPQLLLDALPHSFV 55
K+RV++ G G LG+ L + L+ E + P+D + + + + Q++ + PH +
Sbjct: 2 KERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEIRPHIII 58
>TIGR_CMR|GSU_2365 [details] [associations]
symbol:GSU_2365 "dTDP-4-dehydrorhamnose reductase"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008831
"dTDP-4-dehydrorhamnose reductase activity" evidence=ISS]
[GO:0009243 "O antigen biosynthetic process" evidence=ISS]
[GO:0019305 "dTDP-rhamnose biosynthetic process" evidence=ISS]
InterPro:IPR005913 Pfam:PF04321 InterPro:IPR016040 GO:GO:0000166
Gene3D:3.40.50.720 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0008831 GO:GO:0045226 KO:K00067 TIGRFAMs:TIGR01214
HOGENOM:HOG000227711 HSSP:P26392 RefSeq:NP_953412.1
ProteinModelPortal:Q74AI9 GeneID:2686653 KEGG:gsu:GSU2365
PATRIC:22027579 OMA:TWAGRIA ProtClustDB:CLSK828807
BioCyc:GSUL243231:GH27-2367-MONOMER Uniprot:Q74AI9
Length = 280
Score = 168 (64.2 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 45/123 (36%), Positives = 70/123 (56%)
Query: 58 DVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTE 117
++D+ S V L +P VVVNCAA + CE + D AM++N V L++ T
Sbjct: 30 EIDITSPESVRRVILTL-KPRVVVNCAAYTDVDGCETNADLAMAVNGEG--VGHLAAVTR 86
Query: 118 NKENLLIHLSTDQVYEGVK-SFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSI 176
LL+ +STD V++GVK S + E+D P++VYG+SK+ E+ E + I+R+
Sbjct: 87 EIGALLVQMSTDYVFDGVKESPFLEDDPPNPLSVYGRSKLMGEEQARETPDHL-IVRTQW 145
Query: 177 IYG 179
+YG
Sbjct: 146 LYG 148
>UNIPROTKB|P37760 [details] [associations]
symbol:rfbD "dTDP-4-dehydrorhamnose reductase"
species:83333 "Escherichia coli K-12" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019305 "dTDP-rhamnose biosynthetic
process" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0045226 "extracellular polysaccharide
biosynthetic process" evidence=IEA;ISS] [GO:0016491 "oxidoreductase
activity" evidence=IEA] [GO:0009103 "lipopolysaccharide
biosynthetic process" evidence=IEA;ISS] [GO:0008831
"dTDP-4-dehydrorhamnose reductase activity" evidence=IEA;ISS]
[GO:0009243 "O antigen biosynthetic process" evidence=IEA]
InterPro:IPR005913 Pfam:PF04321 UniPathway:UPA00124
UniPathway:UPA00281 InterPro:IPR016040 GO:GO:0000166
Gene3D:3.40.50.720 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046872
GO:GO:0009103 EMBL:U09876 GO:GO:0008831 GO:GO:0045226 GO:GO:0009243
GO:GO:0019305 PIR:G64969 RefSeq:NP_416544.1 RefSeq:YP_490282.1
ProteinModelPortal:P37760 SMR:P37760 IntAct:P37760 PRIDE:P37760
EnsemblBacteria:EBESCT00000000387 EnsemblBacteria:EBESCT00000016738
GeneID:12932555 GeneID:947117 KEGG:ecj:Y75_p2003 KEGG:eco:b2040
PATRIC:32119413 EchoBASE:EB2310 EcoGene:EG12411
HOGENOM:HOG000227712 KO:K00067 OMA:KNFIKTM ProtClustDB:PRK09987
BioCyc:EcoCyc:DTDPDEHYRHAMREDUCT-MONOMER
BioCyc:ECOL316407:JW2025-MONOMER
BioCyc:MetaCyc:DTDPDEHYRHAMREDUCT-MONOMER Genevestigator:P37760
TIGRFAMs:TIGR01214 Uniprot:P37760
Length = 299
Score = 163 (62.4 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 38/104 (36%), Positives = 58/104 (55%)
Query: 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGV 135
+PD++VN AA + E++P+ A IN S V ++ +IH STD V+ G
Sbjct: 54 RPDIIVNAAAHTAVDKAESEPEFAQLINATS--VEAIAKAANEVGAWVIHYSTDYVFPGN 111
Query: 136 KSF-YKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIY 178
+ E D AP+NVYG++K+A EK + E C+ I R+S +Y
Sbjct: 112 GDMPWLETDATAPLNVYGETKLAGEKALQEYCAKHLIFRTSWVY 155
>UNIPROTKB|P37778 [details] [associations]
symbol:rfbD "dTDP-4-dehydrorhamnose reductase" species:623
"Shigella flexneri" [GO:0008831 "dTDP-4-dehydrorhamnose reductase
activity" evidence=ISS] [GO:0009103 "lipopolysaccharide
biosynthetic process" evidence=ISS] [GO:0045226 "extracellular
polysaccharide biosynthetic process" evidence=ISS]
InterPro:IPR005913 Pfam:PF04321 UniPathway:UPA00124
UniPathway:UPA00281 InterPro:IPR016040 GO:GO:0000166
Gene3D:3.40.50.720 EMBL:X71970 EMBL:AE005674 EMBL:AE014073
GenomeReviews:AE005674_GR GenomeReviews:AE014073_GR GO:GO:0009103
eggNOG:COG1091 GO:GO:0008831 GO:GO:0045226 GO:GO:0009243
GO:GO:0019305 EMBL:L14842 HOGENOM:HOG000227712 KO:K00067
ProtClustDB:PRK09987 TIGRFAMs:TIGR01214 PIR:C55213 PIR:S41535
RefSeq:NP_707935.1 RefSeq:NP_837662.1 ProteinModelPortal:P37778
SMR:P37778 EnsemblBacteria:EBESCT00000086701
EnsemblBacteria:EBESCT00000090020 GeneID:1025316 GeneID:1078509
KEGG:sfl:SF2103 KEGG:sfx:S2226 PATRIC:18705959 OMA:ARFVIEQ
Uniprot:P37778
Length = 299
Score = 163 (62.4 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 48/140 (34%), Positives = 74/140 (52%)
Query: 41 PLPQLL-LDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSA 99
PL L+ LD HS + D + G A +K +PDV+VN AA + E++P+ A
Sbjct: 22 PLGNLIALDV--HSTDYCG-DFSNPEGV-AETVKKIRPDVIVNAAAHTAVDKAESEPNFA 77
Query: 100 MSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSF-YKEEDEIAPVNVYGKSKVAA 158
+N ++ V ++ +IH STD V+ G + E D AP+NVYG++K+A
Sbjct: 78 QLLN--ATCVEAIAKAANEVGAWVIHYSTDYVFPGNGDTPWLETDATAPLNVYGETKLAG 135
Query: 159 EKFIYEKCSNFAILRSSIIY 178
EK + E C+ I R+S +Y
Sbjct: 136 EKALQEHCAKHLIFRTSWVY 155
>DICTYBASE|DDB_G0280135 [details] [associations]
symbol:DDB_G0280135 "methionine adenosyltransferase
regulatory beta subunit" species:44689 "Dictyostelium discoideum"
[GO:0045226 "extracellular polysaccharide biosynthetic process"
evidence=IEA] [GO:0008831 "dTDP-4-dehydrorhamnose reductase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048270 "methionine adenosyltransferase regulator
activity" evidence=ISS] [GO:0048269 "methionine adenosyltransferase
complex" evidence=ISS] [GO:0006556 "S-adenosylmethionine
biosynthetic process" evidence=ISS] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR005913 Pfam:PF04321 InterPro:IPR016040
dictyBase:DDB_G0280135 GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0016740 EMBL:AAFI02000035 eggNOG:COG1091 OMA:MTKYQML
GO:GO:0048269 GO:GO:0008831 GO:GO:0048270 GO:GO:0045226
GO:GO:0006556 RefSeq:XP_641262.1 ProteinModelPortal:Q54VU3
STRING:Q54VU3 PRIDE:Q54VU3 EnsemblProtists:DDB0231749
GeneID:8622394 KEGG:ddi:DDB_G0280135 InParanoid:Q54VU3
Uniprot:Q54VU3
Length = 327
Score = 160 (61.4 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 63/285 (22%), Positives = 129/285 (45%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD 60
+ K +VL+ G TG LG+ L++ ++ + + S + ++ P+ +D
Sbjct: 6 LPKTKVLITGATGLLGRALMKVFTQPPLEHIKLVGLGWSRY--EKYVNQFPNELR--KLD 61
Query: 61 LKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE 120
+ + S F +P+V+++ AA P CE D + +NV ++ L +++
Sbjct: 62 ITNDSELSEFVNDF-KPNVIIHAAAERRPDQCEGDKEKTQKLNVGTT--EKLIELSKSVN 118
Query: 121 NLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYE--KCSN---FAILRSS 175
L ++S+D V++G Y + + P++ YGK+K +E+ I + K S+ + ILR
Sbjct: 119 ATLFYISSDYVFDGENPPYDIDAKTNPLSFYGKTKEESEQLIIKASKESDSFKYIILRVP 178
Query: 176 IIYG-PQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLS 234
++YG + + + + + + +E + + R P V DV ++ L +S
Sbjct: 179 VLYGYVENLKECAVTAVAEQVIKARDANQPIEIDNWQIRYPTCVEDVARVCYELM---IS 235
Query: 235 EDKQMQLLLNVGGPDRVSRVQMAEVDR----GVQSPADISMDITK 275
KQ + + G ++ MA +D G+ +P I I +
Sbjct: 236 --KQYNSIYHFSGQQMKTKYDMA-IDMANVLGITNPQSIIKPINE 277
>UNIPROTKB|O95455 [details] [associations]
symbol:TGDS "dTDP-D-glucose 4,6-dehydratase" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0009225 "nucleotide-sugar metabolic process" evidence=IEA]
[GO:0050662 "coenzyme binding" evidence=IEA] [GO:0008460
"dTDP-glucose 4,6-dehydratase activity" evidence=IEA]
InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
GO:GO:0009225 EMBL:AL359708 GO:GO:0008460 eggNOG:COG1088
HOGENOM:HOG000168006 KO:K01710 PANTHER:PTHR10366:SF41 OMA:GFIASHM
CTD:23483 HOVERGEN:HBG007741 OrthoDB:EOG4PVP08 EMBL:AJ006068
EMBL:AF048686 EMBL:AL139318 EMBL:BC033675 IPI:IPI00003774
RefSeq:NP_055120.1 UniGene:Hs.12393 ProteinModelPortal:O95455
SMR:O95455 IntAct:O95455 MINT:MINT-4773441 STRING:O95455
PhosphoSite:O95455 PRIDE:O95455 DNASU:23483 Ensembl:ENST00000261296
GeneID:23483 KEGG:hsa:23483 UCSC:uc001vlw.3 GeneCards:GC13M095226
HGNC:HGNC:20324 HPA:HPA039927 HPA:HPA040857 neXtProt:NX_O95455
PharmGKB:PA128395791 InParanoid:O95455 PhylomeDB:O95455
GenomeRNAi:23483 NextBio:45843 ArrayExpress:O95455 Bgee:O95455
CleanEx:HS_TGDS Genevestigator:O95455 GermOnline:ENSG00000088451
Uniprot:O95455
Length = 350
Score = 155 (59.6 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 79/269 (29%), Positives = 128/269 (47%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKP-Y---DVAATHHSTPLPQLLLDALPHSFVFFDV 59
KRVLV GG G++ H++ L +E P Y ++ + L L + ++ F
Sbjct: 18 KRVLVTGGAGFIASHMIVSL--VEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQG 75
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK 119
D+ S F + + + D+V++ AA + + +NV + V +S+ E +
Sbjct: 76 DI-CDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHV-LVSAAHEAR 133
Query: 120 ENLLIHLSTDQVYEGVKSFYKEEDEIAP---VNVYGKSKVAAEKFI--YEKCSNFAIL-- 172
I++STD+VY G S KE DE +P N Y SK AAE F+ Y + F ++
Sbjct: 134 VEKFIYVSTDEVYGG--SLDKEFDESSPKQPTNPYASSKAAAECFVQSYWEQYKFPVVIT 191
Query: 173 RSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD---ECRCPVYVRDVVKIILALT 229
RSS +YGP P K +P ++I S+L K H + R +Y DVV+ L +
Sbjct: 192 RSSNVYGPHQY-P-EKVIP-KFI-SLLQHNRKC-CIHGSGLQTRNFLYATDVVEAFLTV- 245
Query: 230 NRWLSEDKQMQLLLNVGGPDRVSRVQMAE 258
L + K ++ N+G +S VQ+A+
Sbjct: 246 ---LKKGKPGEIY-NIGTNFEMSVVQLAK 270
>UNIPROTKB|A0QTF8 [details] [associations]
symbol:rmlD "dTDP-4-dehydrorhamnose reductase"
species:246196 "Mycobacterium smegmatis str. MC2 155" [GO:0008831
"dTDP-4-dehydrorhamnose reductase activity" evidence=IGI]
[GO:0045226 "extracellular polysaccharide biosynthetic process"
evidence=IGI] InterPro:IPR005913 Pfam:PF04321 UniPathway:UPA00124
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 EMBL:CP000480
EMBL:CP001663 GenomeReviews:CP000480_GR eggNOG:COG1091
GO:GO:0008831 GO:GO:0045226 GO:GO:0019305 KO:K00067
TIGRFAMs:TIGR01214 RefSeq:YP_006566549.1 RefSeq:YP_886196.1
ProteinModelPortal:A0QTF8 STRING:A0QTF8
EnsemblBacteria:EBMYCT00000045200 GeneID:13429595 GeneID:4533132
KEGG:msm:MSMEG_1825 PATRIC:18076099 HOGENOM:HOG000227711
OMA:GSPTYVG BioCyc:MSME246196:GJ4Y-1825-MONOMER Uniprot:A0QTF8
Length = 327
Score = 154 (59.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 46/168 (27%), Positives = 84/168 (50%)
Query: 68 DAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINV--PSSLVNWLSSFTENKENLLIH 125
DAV DVV+NCAA + E++P+ A ++N P +L ++ LIH
Sbjct: 74 DAVRRFVANGDVVINCAAYTQVDKAEDEPERAHAVNAVGPGNLAKACAAVDAG----LIH 129
Query: 126 LSTDQVYEGVK--SFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
+STD V+ V + Y+ +DE PVN+YG++K+A E+ + + ++R++ +Y
Sbjct: 130 ISTDYVFGAVDRDTPYEVDDETGPVNIYGRTKLAGEQAVLAAKPDAYVVRTAWVYRGGDG 189
Query: 184 SPVPKSLPIQWIDSVLSKGE-KVEFFHDECRCPVYVRDVVKIILALTN 230
S ++ L+ G+ ++ D+ P Y D+V +L + +
Sbjct: 190 SDFVATM------RRLAAGDGAIDVVADQVGSPTYTGDLVGALLQIVD 231
>UNIPROTKB|F1RP60 [details] [associations]
symbol:TGDS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050662 "coenzyme binding" evidence=IEA] [GO:0009225
"nucleotide-sugar metabolic process" evidence=IEA] [GO:0008460
"dTDP-glucose 4,6-dehydratase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001509
InterPro:IPR005888 Pfam:PF01370 InterPro:IPR016040 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0009225
GeneTree:ENSGT00530000063128 GO:GO:0008460 KO:K01710
PANTHER:PTHR10366:SF41 OMA:GFIASHM EMBL:CU986273
RefSeq:XP_003131096.2 Ensembl:ENSSSCT00000010407 GeneID:100517301
KEGG:ssc:100517301 Uniprot:F1RP60
Length = 355
Score = 153 (58.9 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 79/269 (29%), Positives = 127/269 (47%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKP-YDVA---ATHHSTPLPQLLLDALPHSFVFFDV 59
KRVLV GG G++ H++ L +E P Y + + L L + ++ F
Sbjct: 18 KRVLVTGGAGFIASHVIVSL--VEDYPNYMIVNLDKLDYCASLKNLETISDKQNYKFIQG 75
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK 119
D+ S F + + + D+V++ AA + + +NV + V LS+ E +
Sbjct: 76 DI-CDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHV-LLSAAHEAR 133
Query: 120 ENLLIHLSTDQVYEGVKSFYKEEDEIAP---VNVYGKSKVAAEKFI--YEKCSNFAIL-- 172
I++STD+VY G S KE DE +P N Y SK AAE F+ Y + F ++
Sbjct: 134 VEKFIYVSTDEVYGG--SLDKEFDESSPKQPTNPYASSKAAAECFVQSYWERYKFPVVIT 191
Query: 173 RSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD---ECRCPVYVRDVVKIILALT 229
RSS +YGP P K +P ++I S+L K H + R +Y DVV+ L +
Sbjct: 192 RSSNVYGPHQY-P-EKVIP-KFI-SLLQHNRKC-CIHGSGLQTRNFLYATDVVEAFLTV- 245
Query: 230 NRWLSEDKQMQLLLNVGGPDRVSRVQMAE 258
L + K ++ N+G +S +Q+A+
Sbjct: 246 ---LKKGKPGEIY-NIGTNFEMSVLQLAK 270
>UNIPROTKB|A6QLW2 [details] [associations]
symbol:TGDS "dTDP-D-glucose 4,6-dehydratase" species:9913
"Bos taurus" [GO:0008460 "dTDP-glucose 4,6-dehydratase activity"
evidence=IEA] [GO:0050662 "coenzyme binding" evidence=IEA]
[GO:0009225 "nucleotide-sugar metabolic process" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR001509
InterPro:IPR005888 Pfam:PF01370 InterPro:IPR016040 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0009225
GeneTree:ENSGT00530000063128 GO:GO:0008460 eggNOG:COG1088
HOGENOM:HOG000168006 KO:K01710 PANTHER:PTHR10366:SF41 OMA:GFIASHM
EMBL:BC148106 IPI:IPI00704940 RefSeq:NP_001094629.1
UniGene:Bt.41863 ProteinModelPortal:A6QLW2 STRING:A6QLW2
Ensembl:ENSBTAT00000006984 GeneID:534594 KEGG:bta:534594 CTD:23483
HOVERGEN:HBG007741 InParanoid:A6QLW2 OrthoDB:EOG4PVP08
NextBio:20876459 Uniprot:A6QLW2
Length = 355
Score = 152 (58.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 78/269 (28%), Positives = 128/269 (47%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKP-Y---DVAATHHSTPLPQLLLDALPHSFVFFDV 59
KRVLV GG G++ H++ L +E P Y ++ + L L + ++ F
Sbjct: 18 KRVLVTGGAGFIASHMIVSL--VEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQG 75
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK 119
D+ S F + + + D+V++ AA + + +NV + V +S+ E +
Sbjct: 76 DI-CDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHV-LVSAAHEAR 133
Query: 120 ENLLIHLSTDQVYEGVKSFYKEEDEIAP---VNVYGKSKVAAEKFI--YEKCSNFAIL-- 172
I++STD+VY G S KE DE +P N Y SK AAE F+ Y + F ++
Sbjct: 134 VEKFIYVSTDEVYGG--SLDKEFDESSPKQPTNPYASSKAAAECFVQSYWEQYKFPVVIT 191
Query: 173 RSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD---ECRCPVYVRDVVKIILALT 229
RSS +YGP P K +P ++I S+L K H + R +Y DVV+ L +
Sbjct: 192 RSSNVYGPHQY-P-EKVIP-KFI-SLLQHNRKC-CIHGTGLQTRNFLYATDVVEAFLTV- 245
Query: 230 NRWLSEDKQMQLLLNVGGPDRVSRVQMAE 258
L + K ++ N+G +S +Q+A+
Sbjct: 246 ---LKKGKPGEIY-NIGTNFEMSVLQLAK 270
>ZFIN|ZDB-GENE-030131-5718 [details] [associations]
symbol:tgds "TDP-glucose 4,6-dehydratase"
species:7955 "Danio rerio" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0008460 "dTDP-glucose 4,6-dehydratase activity"
evidence=IEA] [GO:0050662 "coenzyme binding" evidence=IEA]
[GO:0009225 "nucleotide-sugar metabolic process" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] InterPro:IPR001509
InterPro:IPR005888 Pfam:PF01370 InterPro:IPR016040
ZFIN:ZDB-GENE-030131-5718 GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0050662 GO:GO:0009225 GO:GO:0008460 PANTHER:PTHR10366:SF41
HOVERGEN:HBG007741 HSSP:P26391 EMBL:BC066615 IPI:IPI00496965
UniGene:Dr.80538 ProteinModelPortal:Q6NYF5 Uniprot:Q6NYF5
Length = 347
Score = 151 (58.2 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 82/307 (26%), Positives = 138/307 (44%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEI--EGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD 60
++ VLV GG G++G HL+ L+ + +V + + L L S+ F D
Sbjct: 6 RRTVLVTGGAGFIGSHLICALAGRFPHWRIINVDNLQYCSNLKNLRSVQASSSYSFIPGD 65
Query: 61 LKSGSGFDAVALKFGQPDVVVNCAALS-VPR--VCENDPDSAMSINVPSSLVNWLSSFTE 117
+ F DVV +CAA + V VC P M +NV + V +S
Sbjct: 66 VCDPL-FIKHLFSTEHIDVVFHCAAETHVENSFVC---PSRFMRVNVDGTAVLVRASLEA 121
Query: 118 NKENLLIHLSTDQVY-EGVKSFYKEEDEIAPVNVYGKSKVAAEKFI--YEKCSNF--AIL 172
+ + I++STD+VY + V + E P N Y +SK AAE + Y F I
Sbjct: 122 SVQRF-IYISTDEVYGDSVDQPFDELSPKRPTNPYSRSKAAAESIVTSYWLKHKFPAVIT 180
Query: 173 RSSIIYGPQTISPVPKSLPIQWIDSVLSKGEK--VEFFHDECRCPVYVRDVVKIILALTN 230
RSS +YGP+ K +P +++ S+L + +K ++ + R +YV DV L +
Sbjct: 181 RSSNVYGPRQHHE--KVIP-RFL-SLLQQQQKCTIQGSGLQSRHFLYVSDVTDAFLTVME 236
Query: 231 RWLSEDKQMQLLLNVGGPDRVSRVQMAE--VDRGVQSPADISMDI-TKLVQTLNIDPVTY 287
+ + + + N+G + +Q+A V V+S + S+D + V+ + + Y
Sbjct: 237 KGILGE-----IYNIGTGFEIPIIQLARELVQMTVKSVSAESLDDWLEFVEDRPVTELRY 291
Query: 288 K-DGVKL 293
+ VKL
Sbjct: 292 PMNSVKL 298
>UNIPROTKB|E2QWQ8 [details] [associations]
symbol:TGDS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050662 "coenzyme binding" evidence=IEA]
[GO:0009225 "nucleotide-sugar metabolic process" evidence=IEA]
[GO:0008460 "dTDP-glucose 4,6-dehydratase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR001509
InterPro:IPR005888 Pfam:PF01370 InterPro:IPR016040 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0009225
GeneTree:ENSGT00530000063128 GO:GO:0008460 KO:K01710
PANTHER:PTHR10366:SF41 OMA:GFIASHM CTD:23483 EMBL:AAEX03013308
RefSeq:XP_542640.3 Ensembl:ENSCAFT00000008577 GeneID:485521
KEGG:cfa:485521 Uniprot:E2QWQ8
Length = 355
Score = 149 (57.5 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 78/269 (28%), Positives = 127/269 (47%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKP-Y---DVAATHHSTPLPQLLLDALPHSFVFFDV 59
KR+LV GG G++ H++ L +E P Y ++ + L L + ++ F
Sbjct: 18 KRLLVTGGAGFIASHVIVSL--VEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQG 75
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK 119
D+ S F + + + D+V++ AA + + +NV + V +S+ E +
Sbjct: 76 DI-CNSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHV-LVSAAHEAR 133
Query: 120 ENLLIHLSTDQVYEGVKSFYKEEDEIAP---VNVYGKSKVAAEKFI--YEKCSNF--AIL 172
I++STD+VY G S KE DE +P N Y SK AAE F+ Y + F I
Sbjct: 134 VEKFIYVSTDEVYGG--SLDKEFDESSPKQPTNPYASSKAAAECFVQSYWERYKFPAVIT 191
Query: 173 RSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD---ECRCPVYVRDVVKIILALT 229
RSS +YGP P K +P ++I S+L K H + R +Y DVV+ L +
Sbjct: 192 RSSNVYGPHQY-P-EKVIP-KFI-SLLQHNRKC-CIHGSGLQTRNFLYATDVVEAFLTV- 245
Query: 230 NRWLSEDKQMQLLLNVGGPDRVSRVQMAE 258
L + K ++ N+G +S +Q+A+
Sbjct: 246 ---LKKGKPGEIY-NIGTNFEMSVLQLAK 270
>UNIPROTKB|Q46769 [details] [associations]
symbol:rfbD "dTDP-4-dehydrorhamnose reductase" species:562
"Escherichia coli" [GO:0008831 "dTDP-4-dehydrorhamnose reductase
activity" evidence=ISS] [GO:0009103 "lipopolysaccharide
biosynthetic process" evidence=ISS] [GO:0045226 "extracellular
polysaccharide biosynthetic process" evidence=ISS]
InterPro:IPR005913 Pfam:PF04321 UniPathway:UPA00124
UniPathway:UPA00281 InterPro:IPR016040 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0046872 EMBL:AF125322 GO:GO:0009103
eggNOG:COG1091 GO:GO:0008831 GO:GO:0045226 GO:GO:0009243
GO:GO:0019305 TIGRFAMs:TIGR01214 PIR:S78543
ProteinModelPortal:Q46769 SMR:Q46769 PaxDb:Q46769 Uniprot:Q46769
Length = 301
Score = 144 (55.7 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 47/142 (33%), Positives = 72/142 (50%)
Query: 41 PLPQLL-LDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSA 99
PL L+ LD HS + D + G A +K +PDV+VN AA + E++P+ A
Sbjct: 22 PLGNLIALDV--HSTDYCG-DFSNPEGV-AETVKKIRPDVIVNAAAHTDVDKAESEPEFA 77
Query: 100 MSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKE--EDEIAPVNVYGKSKVA 157
+N S V ++ +IH STD V+ G + D AP+NVYG++K++
Sbjct: 78 QLLNATS--VEAIAKAANEVGAWVIHYSTDYVFPGTGEIPWQGGTDATAPLNVYGETKLS 135
Query: 158 AEKFIYEK-CSNFAILRSSIIY 178
+EK +K C I R+S +Y
Sbjct: 136 SEKKALQKHCGKHIIFRTSWVY 157
>TIGR_CMR|BA_0507 [details] [associations]
symbol:BA_0507 "NAD-dependent epimerase/dehydratase family
protein" species:198094 "Bacillus anthracis str. Ames" [GO:0000271
"polysaccharide biosynthetic process" evidence=ISS] [GO:0003824
"catalytic activity" evidence=ISS] InterPro:IPR001509 Pfam:PF01370
InterPro:IPR016040 GO:GO:0003824 GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0050662 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0044237 KO:K01784
HOGENOM:HOG000168004 HSSP:P32054 RefSeq:NP_843043.1
RefSeq:YP_017126.1 RefSeq:YP_026759.1 ProteinModelPortal:Q81YX3
DNASU:1087740 EnsemblBacteria:EBBACT00000010883
EnsemblBacteria:EBBACT00000018378 EnsemblBacteria:EBBACT00000021242
GeneID:1087740 GeneID:2816749 GeneID:2850006 KEGG:ban:BA_0507
KEGG:bar:GBAA_0507 KEGG:bat:BAS0479 OMA:IRWSYAV
ProtClustDB:CLSK915839 BioCyc:BANT260799:GJAJ-522-MONOMER
BioCyc:BANT261594:GJ7F-544-MONOMER Uniprot:Q81YX3
Length = 321
Score = 134 (52.2 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 77/277 (27%), Positives = 123/277 (44%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD 60
MSKK L+ GG G++G HL + E+ G+ Y+V + D L +
Sbjct: 1 MSKK-CLITGGAGFIGSHLAE---ELVGRGYNVTIVDNFYKGKNKYHDELMKEIRVIPIS 56
Query: 61 -LKSGSGFDAVALKFGQPDVVVNCAA-LSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN 118
L S ++ V Q DVV + AA L V E + + N + N L + +
Sbjct: 57 VLDKNSIYELV----NQHDVVFHLAAILGVKTTMEKSIE-LIETNFDGTR-NILQAALKG 110
Query: 119 KENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGK-SKV----AAEKFIYEK-CSNFA-- 170
K+ + + ST +VY K + EE + +YG SK+ A K + E C +A
Sbjct: 111 KKKV-VFASTSEVYGKAKPPFSEEGD----RLYGATSKIRWSYAICKTLEETLCLGYALE 165
Query: 171 -----ILRSSIIYGPQTIS-PVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVV 222
I+R IYGP+ P +P ++I + L +GE + + D + RC YV D V
Sbjct: 166 GLPVTIVRYFNIYGPRAKDGPYAGVIP-RFISAAL-QGEDILVYGDGEQTRCFTYVSDAV 223
Query: 223 KIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEV 259
+ T R + E +++ N+G + S ++AEV
Sbjct: 224 EA----TIRAMDEKVNGEII-NIGSENEKSIKEVAEV 255
Score = 48 (22.0 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 250 RVSRVQMAEV-DRGVQSPADISMDITKLVQTLNIDP-VTYKDGVKLTL 295
++ +V EV G + + D+TKL + VT++DG+K T+
Sbjct: 265 KIVQVPFEEVYPHGFEEIPNRRPDVTKLKDLVQFQAKVTWEDGLKETI 312
>UNIPROTKB|Q74AV3 [details] [associations]
symbol:GSU2247 "UDP-2-acetamido-2,
6-dideoxy-beta-L-arabino-4-hexulose 3-epimerase and
UDP-2-acetamido-2,6-dideoxy-beta-L-lyxo-4-hexulose 4-reductase,
putative" species:243231 "Geobacter sulfurreducens PCA" [GO:0000271
"polysaccharide biosynthetic process" evidence=ISS] [GO:0016614
"oxidoreductase activity, acting on CH-OH group of donors"
evidence=ISS] InterPro:IPR005913 Pfam:PF04321 InterPro:IPR016040
GO:GO:0000166 Gene3D:3.40.50.720 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0016614 GO:GO:0000271 GO:GO:0008831
GO:GO:0045226 KO:K00067 HOGENOM:HOG000224133 OMA:ESDFPDC
RefSeq:NP_953296.1 ProteinModelPortal:Q74AV3 GeneID:2685635
KEGG:gsu:GSU2247 PATRIC:22027347 ProtClustDB:CLSK2462725
BioCyc:GSUL243231:GH27-2227-MONOMER Uniprot:Q74AV3
Length = 304
Score = 143 (55.4 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 58/183 (31%), Positives = 85/183 (46%)
Query: 1 MSKK-RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS-TPLPQLLLDALPHSF-VFF 57
MS + VL+VG +G LG H L G E D AT S + L + D H +
Sbjct: 1 MSHRINVLIVGASGMLG-HTLFGRL-FENDKLDTHATVRSVSELSRWFTD--DHLLKIHG 56
Query: 58 DVDLKSGSGFDAVALKFGQ--PDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSF 115
+D FD+V Q PDVV+NC + DP ++ N + + L+
Sbjct: 57 GID---ADNFDSVLAVLAQIKPDVVINCVGVIKQLPAAEDPVVCIATN--ALFPHRLAVA 111
Query: 116 TENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAI-LRS 174
+ L+H+STD V+ G K Y+E D ++YG+SK F+ E S+ + LR+
Sbjct: 112 CKAAGARLVHISTDCVFSGEKGDYRETDRSDATDLYGRSK-----FLGEVTSDHCVTLRT 166
Query: 175 SII 177
SII
Sbjct: 167 SII 169
>TIGR_CMR|GSU_2247 [details] [associations]
symbol:GSU_2247 "carbohydrate oxidoreductase, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000271
"polysaccharide biosynthetic process" evidence=ISS] [GO:0016614
"oxidoreductase activity, acting on CH-OH group of donors"
evidence=ISS] InterPro:IPR005913 Pfam:PF04321 InterPro:IPR016040
GO:GO:0000166 Gene3D:3.40.50.720 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0016614 GO:GO:0000271 GO:GO:0008831
GO:GO:0045226 KO:K00067 HOGENOM:HOG000224133 OMA:ESDFPDC
RefSeq:NP_953296.1 ProteinModelPortal:Q74AV3 GeneID:2685635
KEGG:gsu:GSU2247 PATRIC:22027347 ProtClustDB:CLSK2462725
BioCyc:GSUL243231:GH27-2227-MONOMER Uniprot:Q74AV3
Length = 304
Score = 143 (55.4 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 58/183 (31%), Positives = 85/183 (46%)
Query: 1 MSKK-RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS-TPLPQLLLDALPHSF-VFF 57
MS + VL+VG +G LG H L G E D AT S + L + D H +
Sbjct: 1 MSHRINVLIVGASGMLG-HTLFGRL-FENDKLDTHATVRSVSELSRWFTD--DHLLKIHG 56
Query: 58 DVDLKSGSGFDAVALKFGQ--PDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSF 115
+D FD+V Q PDVV+NC + DP ++ N + + L+
Sbjct: 57 GID---ADNFDSVLAVLAQIKPDVVINCVGVIKQLPAAEDPVVCIATN--ALFPHRLAVA 111
Query: 116 TENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAI-LRS 174
+ L+H+STD V+ G K Y+E D ++YG+SK F+ E S+ + LR+
Sbjct: 112 CKAAGARLVHISTDCVFSGEKGDYRETDRSDATDLYGRSK-----FLGEVTSDHCVTLRT 166
Query: 175 SII 177
SII
Sbjct: 167 SII 169
>MGI|MGI:1923605 [details] [associations]
symbol:Tgds "TDP-glucose 4,6-dehydratase" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0008460 "dTDP-glucose 4,6-dehydratase activity" evidence=IEA]
[GO:0009225 "nucleotide-sugar metabolic process" evidence=IEA]
[GO:0016829 "lyase activity" evidence=IEA] [GO:0044237 "cellular
metabolic process" evidence=IEA] [GO:0050662 "coenzyme binding"
evidence=IEA] InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
InterPro:IPR016040 MGI:MGI:1923605 GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0050662 GO:GO:0009225 GeneTree:ENSGT00530000063128
GO:GO:0008460 eggNOG:COG1088 HOGENOM:HOG000168006 KO:K01710
PANTHER:PTHR10366:SF41 OMA:GFIASHM CTD:23483 HOVERGEN:HBG007741
OrthoDB:EOG4PVP08 EMBL:AK154341 EMBL:BC021419 IPI:IPI00405383
RefSeq:NP_083854.3 UniGene:Mm.251537 ProteinModelPortal:Q8VDR7
SMR:Q8VDR7 STRING:Q8VDR7 PhosphoSite:Q8VDR7 PRIDE:Q8VDR7
Ensembl:ENSMUST00000022727 GeneID:76355 KEGG:mmu:76355
InParanoid:Q3U4A6 NextBio:344957 Bgee:Q8VDR7 CleanEx:MM_TGDS
Genevestigator:Q8VDR7 GermOnline:ENSMUSG00000022130 Uniprot:Q8VDR7
Length = 355
Score = 143 (55.4 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 81/274 (29%), Positives = 128/274 (46%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKP-YDVA---ATHHSTPLPQLLLDALPHSFVFFDV 59
KRVLV GG G++ H++ L +E P Y + + L L + ++ F
Sbjct: 18 KRVLVTGGAGFIASHVIVSL--VEDYPDYMIVNLDKLDYCASLKNLEPVSNKQNYKFIQG 75
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAA-----LSVPRVCENDPDSAMSINVPSSLVNWLSS 114
D+ S F + + + D+V++ AA LS R E + +V LVN ++
Sbjct: 76 DI-CDSHFVKLLFEVEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHV---LVN--AA 129
Query: 115 FTENKENLLIHLSTDQVYEGVKSFYKEEDEIAP---VNVYGKSKVAAEKFI--YEKCSNF 169
+ E I++STD+VY G S +E DE +P N Y SK AAE F+ Y + F
Sbjct: 130 YEAGVEKF-IYVSTDEVYGG--SLDQEFDESSPKQPTNPYASSKAAAECFVQSYWERYKF 186
Query: 170 AIL--RSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD---ECRCPVYVRDVVKI 224
++ RSS +YGP P K +P ++I S+L K H + R +Y DVV+
Sbjct: 187 PVVITRSSNVYGPHQY-P-EKVIP-KFI-SLLQHNRKC-CIHGSGLQRRNFLYAADVVEA 241
Query: 225 ILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE 258
L + + E + + N+G +S VQ+A+
Sbjct: 242 FLTVLTK--GEPGE---IYNIGTNFEMSVVQLAK 270
>UNIPROTKB|P96871 [details] [associations]
symbol:rmlD "dTDP-4-dehydrorhamnose reductase" species:1773
"Mycobacterium tuberculosis" [GO:0008831 "dTDP-4-dehydrorhamnose
reductase activity" evidence=IGI;IDA] [GO:0019305 "dTDP-rhamnose
biosynthetic process" evidence=IDA] [GO:0045226 "extracellular
polysaccharide biosynthetic process" evidence=IGI]
InterPro:IPR005913 Pfam:PF04321 UniPathway:UPA00124
InterPro:IPR016040 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0000166 Gene3D:3.40.50.720
EMBL:BX842582 eggNOG:COG1091 GO:GO:0008831 GO:GO:0045226
GO:GO:0019305 KO:K00067 TIGRFAMs:TIGR01214 HOGENOM:HOG000227711
OMA:GSPTYVG PIR:C70978 RefSeq:NP_217783.1 RefSeq:NP_337893.1
RefSeq:YP_006516743.1 HSSP:P26392 ProteinModelPortal:P96871
SMR:P96871 EnsemblBacteria:EBMYCT00000002125
EnsemblBacteria:EBMYCT00000071952 GeneID:13318089 GeneID:888704
GeneID:922434 KEGG:mtc:MT3366 KEGG:mtu:Rv3266c KEGG:mtv:RVBD_3266c
PATRIC:18129154 TubercuList:Rv3266c ProtClustDB:CLSK792390
BindingDB:P96871 ChEMBL:CHEMBL1938225 Uniprot:P96871
Length = 304
Score = 134 (52.2 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 46/159 (28%), Positives = 75/159 (47%)
Query: 78 DVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEG--- 134
DVV+NCAA + E++ A ++N L+ LIH+STD V++G
Sbjct: 56 DVVINCAAYTDVDGAESNEAVAYAVNATGP--QHLARACARVGARLIHVSTDYVFDGDFG 113
Query: 135 --VKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPI 192
Y+ DE AP VY +SK+A E+ + A++R++ +Y T K
Sbjct: 114 GAEPRPYEPTDETAPQGVYARSKLAGEQAVLAAFPEAAVVRTAWVYTGGT----GKDFVA 169
Query: 193 QWIDSVLSKGE-KVEFFHDECRCPVYVRDVVKIILALTN 230
+ L+ G +V+ D+ P YV D+ + +LAL +
Sbjct: 170 --VMRRLAAGHGRVDVVDDQTGSPTYVADLAEALLALAD 206
Score = 42 (19.8 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 4 KRVLVVGGTGYLGQHL 19
+R+++ G G LG HL
Sbjct: 6 ERLVITGAGGQLGSHL 21
>TIGR_CMR|GSU_1975 [details] [associations]
symbol:GSU_1975 "NAD-dependent epimerase/dehydratase
family protein" species:243231 "Geobacter sulfurreducens PCA"
[GO:0009225 "nucleotide-sugar metabolic process" evidence=ISS]
[GO:0016829 "lyase activity" evidence=ISS] [GO:0016857 "racemase
and epimerase activity, acting on carbohydrates and derivatives"
evidence=ISS] InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
GO:GO:0009225 EMBL:AE017180 GenomeReviews:AE017180_GR
HOGENOM:HOG000167994 GO:GO:0008460 PANTHER:PTHR10366:SF41
HSSP:P95780 ProtClustDB:CLSK864552 RefSeq:NP_953024.1
ProteinModelPortal:Q74BR6 GeneID:2685764 KEGG:gsu:GSU1975
PATRIC:22026813 OMA:AMKGCDV BioCyc:GSUL243231:GH27-1926-MONOMER
InterPro:IPR026390 TIGRFAMs:TIGR04180 Uniprot:Q74BR6
Length = 336
Score = 140 (54.3 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 78/279 (27%), Positives = 126/279 (45%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAA-THHSTPLPQLLLDAL-PHSFVFFDV-- 59
K++LV G G++G HL + L + G YD A ++++ LD L P DV
Sbjct: 6 KKILVTGADGFIGSHLTEALL-MRG--YDTRAFVYYNSFNSWGWLDHLDPELLKSLDVFA 62
Query: 60 -DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN 118
D++ G A+K G DVV++ AAL + PD+ + NV +L N + + E
Sbjct: 63 GDIRDPHGVRE-AMK-GC-DVVLHLAALIAIPYSYHSPDTYVDTNVKGTL-NVVQAAREL 118
Query: 119 KENLLIHLSTDQVYEGVKSFYK--EEDEIAPVNVYGKSKVAAEKFIYEKCSNF----AIL 172
++H ST +VY G F EE + + Y SK+ A++ S+F AI+
Sbjct: 119 GVAKVVHTSTSEVY-GTARFVPITEEHPLQGQSPYSASKIGADQIAMSFYSSFDTPVAII 177
Query: 173 RSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRW 232
R YGP+ + I I S ++ ++ H R YV D V +A+
Sbjct: 178 RPFNTYGPRQSARAFIPTVITQIASG-ARTLRLGALHPT-RDLNYVADTVAGFIAVAE-- 233
Query: 233 LSEDKQMQLLLNVGGPDRVSRVQMAEVDRGVQSPADISM 271
SE K + ++N+G +S + A + V AD+ +
Sbjct: 234 -SE-KSVGEVINIGSNFEISMGETARMIADVMG-ADVEI 269
>TIGR_CMR|GSU_2240 [details] [associations]
symbol:GSU_2240 "UDP-glucose 4-epimerase" species:243231
"Geobacter sulfurreducens PCA" [GO:0003978 "UDP-glucose 4-epimerase
activity" evidence=ISS] [GO:0006012 "galactose metabolic process"
evidence=ISS] InterPro:IPR001509 InterPro:IPR005886 Pfam:PF01370
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0044237
HOGENOM:HOG000168001 GO:GO:0003978 GO:GO:0006012 InterPro:IPR025308
PANTHER:PTHR10366:SF39 Pfam:PF13950 TIGRFAMs:TIGR01179 KO:K01784
HSSP:P09147 RefSeq:NP_953289.1 ProteinModelPortal:Q74AW0
GeneID:2687202 KEGG:gsu:GSU2240 PATRIC:22027335 OMA:VEHARQG
ProtClustDB:CLSK828777 BioCyc:GSUL243231:GH27-2212-MONOMER
Uniprot:Q74AW0
Length = 326
Score = 138 (53.6 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 51/165 (30%), Positives = 76/165 (46%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHH-STPLPQLLLDALPHSFVFFDVDLKSG 64
VLV GG GY+G H+++ LSE G Y V + ST P DAL H DL
Sbjct: 3 VLVTGGAGYIGSHVVRQLSEA-G--YTVVVYDNLSTGFP----DALVHGERLVTGDLSDT 55
Query: 65 SGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLI 124
+ DA+ +++G V+ A++ P P N ++L N L + ++ I
Sbjct: 56 ARLDALFVEYGFSTVLHFAASIIAPESV-TAPLKYYGNNTRNTL-NLLGACVKHGVERFI 113
Query: 125 HLSTDQVYEGV--KSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCS 167
ST VY G+ EE P+N YG SK+ +E + + C+
Sbjct: 114 FSSTAAVY-GIPDSGVAAEESATVPINPYGTSKLMSEWMLRDVCA 157
>RGD|1306544 [details] [associations]
symbol:Tgds "TDP-glucose 4,6-dehydratase" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008460 "dTDP-glucose 4,6-dehydratase activity" evidence=IEA]
[GO:0009225 "nucleotide-sugar metabolic process" evidence=IEA]
[GO:0050662 "coenzyme binding" evidence=IEA] InterPro:IPR001509
InterPro:IPR005888 Pfam:PF01370 InterPro:IPR016040 RGD:1306544
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0009225
GO:GO:0008460 PANTHER:PTHR10366:SF41 OMA:GFIASHM IPI:IPI00373689
Ensembl:ENSRNOT00000012925 UCSC:RGD:1306544 Uniprot:F1M7R7
Length = 355
Score = 137 (53.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 81/274 (29%), Positives = 128/274 (46%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKP-Y---DVAATHHSTPLPQLLLDALPHSFVFFDV 59
KRVLV GG G++ H++ L +E P Y ++ + L L + ++ F
Sbjct: 18 KRVLVTGGAGFIASHVIVSL--VEDYPNYMIINLDKLDYCASLKNLEPVSNKQNYKFIQG 75
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAA-----LSVPRVCENDPDSAMSINVPSSLVNWLSS 114
D+ S F + + D+V++ AA LS R E + +V LVN ++
Sbjct: 76 DI-CDSHFVKRLFESEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHV---LVN--TA 129
Query: 115 FTENKENLLIHLSTDQVYEGVKSFYKEEDEIAP---VNVYGKSKVAAEKFI--YEKCSNF 169
+ E I++STD+VY G S +E DE +P N Y SK AAE F+ Y + F
Sbjct: 130 YEARVEKF-IYVSTDEVYGG--SLDQEFDESSPKQPTNPYASSKAAAECFVQSYWERYKF 186
Query: 170 AIL--RSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD---ECRCPVYVRDVVKI 224
++ RSS +YGP P K +P ++I S+L K H + R +Y DVV+
Sbjct: 187 PVVITRSSNVYGPHQY-P-EKVIP-KFI-SLLQHDRKC-CIHGSGLQRRNFLYAADVVEA 241
Query: 225 ILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE 258
L + + E + + N+G +S VQ+A+
Sbjct: 242 FLTVLTK--GEPGE---IYNIGTNFEMSVVQLAK 270
>DICTYBASE|DDB_G0276473 [details] [associations]
symbol:DDB_G0276473 "NAD-dependent
epimerase/dehydratase family protein" species:44689 "Dictyostelium
discoideum" [GO:0045335 "phagocytic vesicle" evidence=IDA]
[GO:0050662 "coenzyme binding" evidence=IEA] [GO:0044237 "cellular
metabolic process" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR001509
Pfam:PF01370 InterPro:IPR016040 dictyBase:DDB_G0276473
GO:GO:0045335 GO:GO:0003824 GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0050662 GO:GO:0044237 EMBL:AAFI02000015 eggNOG:COG1088
OMA:ETMKLLW RefSeq:XP_643167.1 ProteinModelPortal:Q86HU8
PRIDE:Q86HU8 EnsemblProtists:DDB0234265 GeneID:8620575
KEGG:ddi:DDB_G0276473 InParanoid:Q86HU8 ProtClustDB:CLSZ2430901
Uniprot:Q86HU8
Length = 363
Score = 136 (52.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 65/242 (26%), Positives = 105/242 (43%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFD-- 58
MSK VL++GG G++G++L+Q L +E K + LP H F D
Sbjct: 1 MSKPNVLILGGVGFIGRNLVQYL--VEQKCCNKIRVADKV-LPATAFLGAKHLEAFADPS 57
Query: 59 VDLKSGSGFDAVA------LKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWL 112
V+ G+ A + L+ G+ ++V N A D+ + V V
Sbjct: 58 VEYMQGNLASAASITKCFTLEGGKFNIVFNLAG----ETKYGQTDAVYNEKVYDVSVKCA 113
Query: 113 SSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYE-KCSNFAI 171
+ + + I +ST Q+Y K KE D+ P + K+ AEK + E N I
Sbjct: 114 TEAAKVGVDKFIEVSTAQIYSSNKKPSKEGDKTDPWTLIASHKLKAEKALKEINGLNLII 173
Query: 172 LRSSIIYGPQTISPVPKSLPIQWIDSVLSK--GEKVEFFHD-ECRC-PVYVRDVVKIILA 227
+R S++YGP I + + I + K EK++F D + + V+V DV K +
Sbjct: 174 VRPSVVYGPGDILGISPRI----ITGAVYKHTNEKMKFLWDGDLKYNTVHVNDVCKALWF 229
Query: 228 LT 229
L+
Sbjct: 230 LS 231
>UNIPROTKB|F1P029 [details] [associations]
symbol:TGDS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008460
"dTDP-glucose 4,6-dehydratase activity" evidence=IEA] [GO:0009225
"nucleotide-sugar metabolic process" evidence=IEA] [GO:0050662
"coenzyme binding" evidence=IEA] InterPro:IPR001509
InterPro:IPR005888 Pfam:PF01370 InterPro:IPR016040 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0009225
GeneTree:ENSGT00530000063128 GO:GO:0008460 PANTHER:PTHR10366:SF41
OMA:GFIASHM EMBL:AADN02029320 IPI:IPI00594682
Ensembl:ENSGALT00000027315 Uniprot:F1P029
Length = 365
Score = 136 (52.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 72/268 (26%), Positives = 122/268 (45%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKP-Y---DVAATHHSTPLPQLLLDALPHSFVFFD 58
+KR+LV GG G++ H++ L + P Y ++ + L L + ++ F
Sbjct: 22 EKRLLVTGGAGFIASHVVVSL--VRNYPNYLIINLDKLDYCASLKNLETVSEKENYKFIQ 79
Query: 59 VDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN 118
D+ F + + D+V++ AA + + +NV + V ++ N
Sbjct: 80 GDICEPH-FIKQLFETEKIDIVLHFAAQTHVDLSFWHALEFTYVNVYGTNVLVAAAHEAN 138
Query: 119 KENLLIHLSTDQVYEG-VKSFYKEEDEIAPVNVYGKSKVAAEKFI--YEKCSNFAIL--R 173
E +++STD+VY G + E P N Y SK AAE F+ Y + F ++ R
Sbjct: 139 VEKF-VYVSTDEVYGGSTDQEFDESSPKCPTNPYASSKAAAECFVQSYWERYQFPVVITR 197
Query: 174 SSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD---ECRCPVYVRDVVKIILALTN 230
SS +YGP P K +P ++I S+L + K H + R +Y DVV+ L +
Sbjct: 198 SSNVYGPHQY-P-EKVIP-KFI-SLLQQNRKC-CIHGSGLQRRNFLYATDVVEAFLTV-- 250
Query: 231 RWLSEDKQMQLLLNVGGPDRVSRVQMAE 258
L E K ++ N+G +S VQ+A+
Sbjct: 251 --LKEGKPGEIY-NIGTNFEMSIVQLAK 275
>CGD|CAL0000450 [details] [associations]
symbol:GAL102 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0008460
"dTDP-glucose 4,6-dehydratase activity" evidence=IDA] [GO:0009225
"nucleotide-sugar metabolic process" evidence=IC] [GO:0009272
"fungal-type cell wall biogenesis" evidence=IMP] InterPro:IPR001509
InterPro:IPR005888 Pfam:PF01370 InterPro:IPR016040 CGD:CAL0000450
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0009225
GO:GO:0035690 GO:GO:0009272 EMBL:AACQ01000118 EMBL:AACQ01000119
GO:GO:0008460 eggNOG:COG1088 KO:K01710 PANTHER:PTHR10366:SF41
RefSeq:XP_713734.1 RefSeq:XP_713768.1 ProteinModelPortal:Q59VY4
STRING:Q59VY4 GeneID:3644585 GeneID:3644611 KEGG:cal:CaO19.11158
KEGG:cal:CaO19.3674 Uniprot:Q59VY4
Length = 320
Score = 132 (51.5 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 65/265 (24%), Positives = 111/265 (41%)
Query: 4 KRVLVVGGTGYLGQHLL-QGLSEIEGKPYD-VAATHHSTPLPQLLLDALPHSFVFFDVDL 61
KR++V GG G++G H L + + + + ++++ ++ +F F +DL
Sbjct: 7 KRIVVSGGAGFIGIHFLCYMVKKYPNFHFTCIDKLNYASNATEIENLKSFSNFEFVHLDL 66
Query: 62 KSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE- 120
+ + + D++ A SV R + DP N+ ++ N L N
Sbjct: 67 SDNLEY-LLKITKNTTDIINFAAESSVDRSFK-DPVYFTKNNILATQ-NLLECHRLNPSI 123
Query: 121 NLLIHLSTDQVYEGV-KSFYKEEDEIAPVNVYGKSKVAAEKFI----YEKCSNFAILRSS 175
+H+STD+VY V + KE + P N Y SK A + I Y ILR +
Sbjct: 124 GYFLHISTDEVYGDVYEGDNKENAVMNPTNPYSASKAAIDLIIKSYQYSYKLPITILRPN 183
Query: 176 IIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSE 235
+YGP L IQ I+ K V R +YV D+V LA+ W+
Sbjct: 184 NVYGPLQYPEKIIPLTIQCINE--KKPIPVHGKGTNKRKYLYVLDIV---LAIETVWIKN 238
Query: 236 DKQ-MQLLLNVGGPDRVSRVQMAEV 259
+ + N+GG D + + + ++
Sbjct: 239 PMTTVNQIYNIGGTDELDNLSLIKL 263
>UNIPROTKB|Q59VY4 [details] [associations]
symbol:TGD99 "Putative uncharacterized protein TGD99"
species:237561 "Candida albicans SC5314" [GO:0008460 "dTDP-glucose
4,6-dehydratase activity" evidence=IDA] [GO:0009225
"nucleotide-sugar metabolic process" evidence=IC] [GO:0009272
"fungal-type cell wall biogenesis" evidence=IMP] [GO:0035690
"cellular response to drug" evidence=IMP] InterPro:IPR001509
InterPro:IPR005888 Pfam:PF01370 InterPro:IPR016040 CGD:CAL0000450
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0009225
GO:GO:0035690 GO:GO:0009272 EMBL:AACQ01000118 EMBL:AACQ01000119
GO:GO:0008460 eggNOG:COG1088 KO:K01710 PANTHER:PTHR10366:SF41
RefSeq:XP_713734.1 RefSeq:XP_713768.1 ProteinModelPortal:Q59VY4
STRING:Q59VY4 GeneID:3644585 GeneID:3644611 KEGG:cal:CaO19.11158
KEGG:cal:CaO19.3674 Uniprot:Q59VY4
Length = 320
Score = 132 (51.5 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 65/265 (24%), Positives = 111/265 (41%)
Query: 4 KRVLVVGGTGYLGQHLL-QGLSEIEGKPYD-VAATHHSTPLPQLLLDALPHSFVFFDVDL 61
KR++V GG G++G H L + + + + ++++ ++ +F F +DL
Sbjct: 7 KRIVVSGGAGFIGIHFLCYMVKKYPNFHFTCIDKLNYASNATEIENLKSFSNFEFVHLDL 66
Query: 62 KSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE- 120
+ + + D++ A SV R + DP N+ ++ N L N
Sbjct: 67 SDNLEY-LLKITKNTTDIINFAAESSVDRSFK-DPVYFTKNNILATQ-NLLECHRLNPSI 123
Query: 121 NLLIHLSTDQVYEGV-KSFYKEEDEIAPVNVYGKSKVAAEKFI----YEKCSNFAILRSS 175
+H+STD+VY V + KE + P N Y SK A + I Y ILR +
Sbjct: 124 GYFLHISTDEVYGDVYEGDNKENAVMNPTNPYSASKAAIDLIIKSYQYSYKLPITILRPN 183
Query: 176 IIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSE 235
+YGP L IQ I+ K V R +YV D+V LA+ W+
Sbjct: 184 NVYGPLQYPEKIIPLTIQCINE--KKPIPVHGKGTNKRKYLYVLDIV---LAIETVWIKN 238
Query: 236 DKQ-MQLLLNVGGPDRVSRVQMAEV 259
+ + N+GG D + + + ++
Sbjct: 239 PMTTVNQIYNIGGTDELDNLSLIKL 263
>TIGR_CMR|BA_5505 [details] [associations]
symbol:BA_5505 "UDP-glucose 4-epimerase" species:198094
"Bacillus anthracis str. Ames" [GO:0003978 "UDP-glucose 4-epimerase
activity" evidence=ISS] [GO:0006012 "galactose metabolic process"
evidence=ISS] InterPro:IPR001509 InterPro:IPR005886 Pfam:PF01370
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
GO:GO:0046872 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0044237 HOGENOM:HOG000168001
OMA:SHPNGYN GO:GO:0003978 GO:GO:0006012 InterPro:IPR025308
PANTHER:PTHR10366:SF39 Pfam:PF13950 TIGRFAMs:TIGR01179 KO:K01784
RefSeq:NP_847665.1 RefSeq:YP_022172.1 RefSeq:YP_031353.1 PDB:2C20
PDBsum:2C20 ProteinModelPortal:Q81K34 SMR:Q81K34 DNASU:1085150
EnsemblBacteria:EBBACT00000011015 EnsemblBacteria:EBBACT00000018769
EnsemblBacteria:EBBACT00000021224 GeneID:1085150 GeneID:2819098
GeneID:2850681 KEGG:ban:BA_5505 KEGG:bar:GBAA_5505 KEGG:bat:BAS5114
ProtClustDB:CLSK917664 BioCyc:BANT260799:GJAJ-5189-MONOMER
BioCyc:BANT261594:GJ7F-5367-MONOMER EvolutionaryTrace:Q81K34
Uniprot:Q81K34
Length = 330
Score = 127 (49.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 65/235 (27%), Positives = 101/235 (42%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGS 65
+L+ GG GY+G H ++ L + EG V + T DA+ F++ DL+ +
Sbjct: 4 ILICGGAGYIGSHAVKKLVD-EGLSV-VVVDNLQTGHE----DAITEGAKFYNGDLRDKA 57
Query: 66 GFDAVALKFGQPDV--VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
V F Q ++ V++ AA S+ V P + NV +L L E K +
Sbjct: 58 FLRDV---FTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALC-LLEVMDEFKVDKF 113
Query: 124 IHLSTDQVYEGVK-SFYKEEDEIAPVNVYGKSKVAAEKFI--YEKCSN--FAILRSSIIY 178
I ST Y V EE P N YG++K+A EK + Y + SN + I R +
Sbjct: 114 IFSSTAATYGEVDVDLITEETMTNPTNTYGETKLAIEKMLHWYSQASNLRYKIFRYFNVA 173
Query: 179 G--PQTI-----SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCP--VYVRDVVKI 224
G P I P +P+ + L + EK+ F D+ P +RD + +
Sbjct: 174 GATPNGIIGEDHRPETHLIPLV-LQVALGQREKIMMFGDDYNTPDGTCIRDYIHV 227
>TIGR_CMR|BA_1230 [details] [associations]
symbol:BA_1230 "dTDP-glucose 4,6-dehydratase"
species:198094 "Bacillus anthracis str. Ames" [GO:0008460
"dTDP-glucose 4,6-dehydratase activity" evidence=ISS] [GO:0009243
"O antigen biosynthetic process" evidence=ISS] [GO:0019305
"dTDP-rhamnose biosynthetic process" evidence=ISS]
InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0009225
GO:GO:0008460 TIGRFAMs:TIGR01181 HSSP:P27830 HOGENOM:HOG000168006
KO:K01710 PANTHER:PTHR10366:SF41 OMA:GFIASHM RefSeq:NP_843702.1
RefSeq:YP_017844.1 RefSeq:YP_027409.1 PDB:4EGB PDBsum:4EGB
ProteinModelPortal:Q81TP0 SMR:Q81TP0 DNASU:1085406
EnsemblBacteria:EBBACT00000011863 EnsemblBacteria:EBBACT00000016310
EnsemblBacteria:EBBACT00000023983 GeneID:1085406 GeneID:2815086
GeneID:2848339 KEGG:ban:BA_1230 KEGG:bar:GBAA_1230 KEGG:bat:BAS1137
ProtClustDB:CLSK916141 BioCyc:BANT260799:GJAJ-1213-MONOMER
BioCyc:BANT261594:GJ7F-1267-MONOMER Uniprot:Q81TP0
Length = 322
Score = 126 (49.4 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 69/266 (25%), Positives = 120/266 (45%)
Query: 6 VLVVGGTGYLGQ----HLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDL 61
+LV GG G++G ++LQ + +D A T+ + P+ + F ++
Sbjct: 3 ILVTGGAGFIGSNFVHYMLQSYETYKIINFD-ALTYSGNLNNVKSIQDHPN-YYFVKGEI 60
Query: 62 KSGSGFDAVALKFGQPDVVVNCAALS-VPRVCENDPDSAMSINVPSSLVNWLSSFTENKE 120
++G + V +K V+VN AA S V R EN P NV + V L +
Sbjct: 61 QNGELLEHV-IKERDVQVIVNFAAESHVDRSIEN-PIPFYDTNVIGT-VTLLELVKKYPH 117
Query: 121 NLLIHLSTDQVYE--GVKSFYKEEDEIAPVNVYGKSKVAAEKFI--YEKCSNFAIL--RS 174
L+ +STD+VY G + EE +AP + Y SK +A+ Y K ++ R
Sbjct: 118 IKLVQVSTDEVYGSLGKTGRFTEETPLAPNSPYSSSKASADMIALAYYKTYQLPVIVTRC 177
Query: 175 SIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILALTNRW 232
S YGP P K +P+ + + L +G+K+ + D R ++V D I + ++
Sbjct: 178 SNNYGPYQY-P-EKLIPLM-VTNAL-EGKKLPLYGDGLNVRDWLHVTDHCSAIDVVLHKG 233
Query: 233 LSEDKQMQLLLNVGGPDRVSRVQMAE 258
++ + N+GG + + V++ E
Sbjct: 234 -----RVGEVYNIGGNNEKTNVEVVE 254
>UNIPROTKB|P29781 [details] [associations]
symbol:strL "dTDP-4-dehydrorhamnose reductase" species:1911
"Streptomyces griseus" [GO:0008831 "dTDP-4-dehydrorhamnose
reductase activity" evidence=ISS] [GO:0045226 "extracellular
polysaccharide biosynthetic process" evidence=ISS]
InterPro:IPR005913 Pfam:PF04321 UniPathway:UPA00066
UniPathway:UPA00124 InterPro:IPR016040 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0019872 GO:GO:0008831 GO:GO:0045226
GO:GO:0019305 EMBL:X62567 TIGRFAMs:TIGR01214 PIR:S18618
ProteinModelPortal:P29781 Uniprot:P29781
Length = 304
Score = 124 (48.7 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 37/123 (30%), Positives = 62/123 (50%)
Query: 59 VDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN 118
+D+ G+ + + +P VVVNCAA + E++P AM++N L+
Sbjct: 41 LDITDGAAVRSAVAEH-RPAVVVNCAAWTAVDEAESEPALAMAVNGEGP--RHLAQACRA 97
Query: 119 KENLLIHLSTDQVYEGVKSF-YKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFA-ILRSSI 176
+L+ LSTD V+ G Y+E+ P VYG +K A E+ + E + I+R++
Sbjct: 98 VGAVLLQLSTDYVFPGSGGRPYREDHPTGPRTVYGCTKRAGERAVLEVLPDTGYIVRTAW 157
Query: 177 IYG 179
+YG
Sbjct: 158 LYG 160
Score = 38 (18.4 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 3 KKRVLVVGGTGYLGQHL 19
+ R LV G +G LG+ L
Sbjct: 6 RPRWLVTGASGMLGREL 22
>UNIPROTKB|P27830 [details] [associations]
symbol:rffG "dTDP-glucose 4,6-dehydratase 2" species:83333
"Escherichia coli K-12" [GO:0050662 "coenzyme binding"
evidence=IEA] [GO:0009225 "nucleotide-sugar metabolic process"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0019305 "dTDP-rhamnose biosynthetic process" evidence=IEA]
[GO:0045226 "extracellular polysaccharide biosynthetic process"
evidence=IDA] [GO:0009103 "lipopolysaccharide biosynthetic process"
evidence=IEA;IDA] [GO:0008460 "dTDP-glucose 4,6-dehydratase
activity" evidence=IEA;IDA] [GO:0009243 "O antigen biosynthetic
process" evidence=IEA] InterPro:IPR001509 InterPro:IPR005888
Pfam:PF01370 UniPathway:UPA00124 UniPathway:UPA00281
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0009103 EMBL:M87049 OMA:RAYRQQM
GO:GO:0045226 GO:GO:0009243 GO:GO:0008460 TIGRFAMs:TIGR01181
eggNOG:COG1088 GO:GO:0019305 HOGENOM:HOG000168006 KO:K01710
PANTHER:PTHR10366:SF41 PIR:G65182 RefSeq:YP_026255.1
RefSeq:YP_491651.1 PDB:1BXK PDBsum:1BXK ProteinModelPortal:P27830
SMR:P27830 PRIDE:P27830 EnsemblBacteria:EBESCT00000002573
EnsemblBacteria:EBESCT00000015511 GeneID:12933083 GeneID:948300
KEGG:ecj:Y75_p3387 KEGG:eco:b3788 PATRIC:32123069 EchoBASE:EB1422
EcoGene:EG11453 ProtClustDB:PRK10217
BioCyc:EcoCyc:DTDPGLUCDEHYDRAT2-MONOMER
BioCyc:ECOL316407:JW5598-MONOMER
BioCyc:MetaCyc:DTDPGLUCDEHYDRAT2-MONOMER EvolutionaryTrace:P27830
Genevestigator:P27830 Uniprot:P27830
Length = 355
Score = 125 (49.1 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 60/235 (25%), Positives = 106/235 (45%)
Query: 4 KRVLVVGGTGYLGQHLLQGL-SEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK 62
+++L+ GG G++G L++ + +E V ++ L L A F F VD+
Sbjct: 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDIC 61
Query: 63 SGSGFDAVALKFGQPDVVVNCAALS-VPRVCENDPDSAMSINVPSS--LVN-----WLSS 114
+ V + QPD V++ AA S V R + P + + N+ + L+ W ++
Sbjct: 62 DRAELARVFTEH-QPDCVMHLAAESHVDRSIDG-PAAFIETNIVGTYTLLEAARAYW-NA 118
Query: 115 FTENKENLLI--HLSTDQVYEGVKS---FYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNF 169
TE+K++ H+STD+VY + S F+ E AP + Y SK +++ + +
Sbjct: 119 LTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTY 178
Query: 170 A----ILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220
I S YGP P K +P+ ++++ K V + R +YV D
Sbjct: 179 GLPTLITNCSNNYGPYHF-P-EKLIPLMILNALAGKSLPVYGNGQQIRDWLYVED 231
>RGD|1583401 [details] [associations]
symbol:LOC682491 "similar to methionine adenosyltransferase II,
beta" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008831 "dTDP-4-dehydrorhamnose
reductase activity" evidence=IEA] [GO:0045226 "extracellular
polysaccharide biosynthetic process" evidence=IEA]
InterPro:IPR005913 Pfam:PF04321 InterPro:IPR016040 RGD:1583401
GO:GO:0000166 Gene3D:3.40.50.720 GeneTree:ENSGT00390000006721
OrthoDB:EOG4W9J47 GO:GO:0008831 GO:GO:0045226 IPI:IPI00782614
Ensembl:ENSRNOT00000061920 Uniprot:D3ZPH4
Length = 258
Score = 121 (47.7 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 32/104 (30%), Positives = 56/104 (53%)
Query: 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGV 135
QP V+V+CAA V E+ PD+A +NV + N L+ L+++ +D V++G
Sbjct: 86 QPHVIVHCAAERRADV-ESHPDAASQLNVAAG--N-LAKVAAGVGTFLMYIRSDYVFDGT 141
Query: 136 KSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYG 179
Y D I P+++ GK+K+ +K + E +LR +++ G
Sbjct: 142 NPAYMVVD-IGPLDLCGKTKLDGKKVVLENNLGNVVLRITVLNG 184
>UNIPROTKB|Q0BYW6 [details] [associations]
symbol:HNE_2639 "UDP-glucuronate 5'-epimerase"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0009103
"lipopolysaccharide biosynthetic process" evidence=ISS] [GO:0050379
"UDP-glucuronate 5'-epimerase activity" evidence=ISS]
InterPro:IPR001509 InterPro:IPR008089 Pfam:PF01370 PRINTS:PR01713
InterPro:IPR016040 eggNOG:COG0451 GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0050662 GO:GO:0009103 EMBL:CP000158 GenomeReviews:CP000158_GR
HOGENOM:HOG000168000 KO:K08679 GO:GO:0050379 RefSeq:YP_761327.1
ProteinModelPortal:Q0BYW6 STRING:Q0BYW6 GeneID:4289771
KEGG:hne:HNE_2639 PATRIC:32218139 OMA:NSAYSAN
BioCyc:HNEP228405:GI69-2655-MONOMER Uniprot:Q0BYW6
Length = 334
Score = 122 (48.0 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 60/238 (25%), Positives = 103/238 (43%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPL--PQLLLDALPHSFVFFDVDLK 62
++LV G G++G + L + EG + V TP PQL D F D L+
Sbjct: 2 KILVTGAAGFIGSEMALRLLK-EG--HSVTGVDCFTPYYDPQLKEDRAARLTAFDDFRLE 58
Query: 63 SGSGFDAVALK--FGQ--PDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN 118
D+ A++ F + P++V++ AA + R + P + N+ S N + +
Sbjct: 59 RIRIEDSEAMEAVFQRDTPEMVLHFAAQAGVRYSLDHPRDFIDANIVGSF-NIIDLSRRH 117
Query: 119 KENLLIHLSTDQVYEGVKSFYKEEDEIAP--VNVYGKSKVAAEKFIYEKCSNFAI----L 172
L+ ST Y + F EE + AP + +Y +K+A+E + + + L
Sbjct: 118 GTQHLVMASTSSAYGANQKFPFEERDSAPYPLTIYAATKLASELIAHSHAHLYGVPTTVL 177
Query: 173 RSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKIILAL 228
R +YGP P + D + KG+ ++ F+ D R Y+ D+V+ I L
Sbjct: 178 RFFSVYGPWGR---PDMAFFLFTDKIF-KGQPIDVFNHGDLLRDFTYIDDLVEAIRRL 231
>ZFIN|ZDB-GENE-050417-163 [details] [associations]
symbol:nsdhl "NAD(P) dependent steroid
dehydrogenase-like" species:7955 "Danio rerio" [GO:0016616
"oxidoreductase activity, acting on the CH-OH group of donors, NAD
or NADP as acceptor" evidence=IEA] [GO:0055114 "oxidation-reduction
process" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006694 "steroid biosynthetic process"
evidence=IEA] [GO:0003854 "3-beta-hydroxy-delta5-steroid
dehydrogenase activity" evidence=IEA] [GO:0016491 "oxidoreductase
activity" evidence=IEA] InterPro:IPR002225 Pfam:PF01073
InterPro:IPR016040 ZFIN:ZDB-GENE-050417-163 eggNOG:COG0451
HOGENOM:HOG000167989 GO:GO:0003854 GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0006694 KO:K07748 CTD:50814 HOVERGEN:HBG054675 EMBL:BC093332
IPI:IPI00570211 RefSeq:NP_001017674.1 UniGene:Dr.84494
ProteinModelPortal:Q566U2 STRING:Q566U2 GeneID:550369
KEGG:dre:550369 InParanoid:Q566U2 NextBio:20879621
ArrayExpress:Q566U2 Uniprot:Q566U2
Length = 345
Score = 122 (48.0 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 52/195 (26%), Positives = 89/195 (45%)
Query: 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDL 61
S KR V+GG+G+LG+HL++ L + G +V + LP + F+ DL
Sbjct: 8 SSKRCTVIGGSGFLGRHLVERLVD-RGYTVNVFDIRQAYELPGV---------TFYQGDL 57
Query: 62 KSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN 121
+ALK + +V +CA+ P +D +N+ + + +
Sbjct: 58 CDKLAL-VMALK--EVSIVFHCAS---PAPGSDDGALFQRVNIDGTRTVIQACHEAGVQK 111
Query: 122 LLIHLSTDQVYEG--VKSFYKEEDEIA--PVNVYGKSKVAAEKFIYEKCSN---F--AIL 172
L++ S V+EG +K+ KE+ A P++ Y ++K+ EK + E CS F +
Sbjct: 112 LILTSSASVVFEGTDIKNG-KEDLPYAKKPIDYYTETKIKQEKLVLEACSKEKGFLTVAI 170
Query: 173 RSSIIYGPQTISPVP 187
R I+GP+ VP
Sbjct: 171 RPHGIFGPRDPQLVP 185
>SGD|S000002969 [details] [associations]
symbol:ERG26 "C-3 sterol dehydrogenase" species:4932
"Saccharomyces cerevisiae" [GO:0047012 "sterol-4-alpha-carboxylate
3-dehydrogenase (decarboxylating) activity" evidence=IEA]
[GO:0005789 "endoplasmic reticulum membrane" evidence=IEA;IDA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA] [GO:0016020
"membrane" evidence=IEA] [GO:0003854 "3-beta-hydroxy-delta5-steroid
dehydrogenase activity" evidence=IEA] [GO:0006694 "steroid
biosynthetic process" evidence=IEA] [GO:0016491 "oxidoreductase
activity" evidence=IEA] [GO:0006696 "ergosterol biosynthetic
process" evidence=IDA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0016126 "sterol biosynthetic process"
evidence=IEA] [GO:0016616 "oxidoreductase activity, acting on the
CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA]
[GO:0008202 "steroid metabolic process" evidence=IEA] [GO:0006629
"lipid metabolic process" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000252 "C-3 sterol dehydrogenase (C-4
sterol decarboxylase) activity" evidence=IDA] UniPathway:UPA00770
InterPro:IPR002225 Pfam:PF01073 InterPro:IPR016040 SGD:S000002969
EMBL:BK006941 eggNOG:COG0451 HOGENOM:HOG000167989 GO:GO:0003854
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0005789
GeneTree:ENSGT00550000074557 OMA:IQLQPTF GO:GO:0006696 KO:K07748
OrthoDB:EOG4DNJD4 GO:GO:0000252 GO:GO:0047012 EMBL:Z72523
EMBL:AY693026 PIR:S64003 RefSeq:NP_011514.1
ProteinModelPortal:P53199 SMR:P53199 DIP:DIP-6786N IntAct:P53199
MINT:MINT-666123 STRING:P53199 PaxDb:P53199 PeptideAtlas:P53199
EnsemblFungi:YGL001C GeneID:852883 KEGG:sce:YGL001C CYGD:YGL001c
BioCyc:MetaCyc:YGL001C-MONOMER NextBio:972532 Genevestigator:P53199
GermOnline:YGL001C Uniprot:P53199
Length = 349
Score = 122 (48.0 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 58/201 (28%), Positives = 94/201 (46%)
Query: 1 MSK-KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHS---FVF 56
MSK VL++GG+G+LG HL+Q +I KP D+ LP+ L + F
Sbjct: 1 MSKIDSVLIIGGSGFLGLHLIQQFFDINPKP-DIHI-FDVRDLPEKLSKQFTFNVDDIKF 58
Query: 57 FDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFT 116
DL S + A+ + +VVV+CA+ P +N PD +NV + N +
Sbjct: 59 HKGDLTSPDDMEN-AINESKANVVVHCAS---PMHGQN-PDIYDIVNVKGTR-NVIDMCK 112
Query: 117 ENKENLLIHLSTDQV-YEGVKSFYKEED----EIAPVNVYGKSKVAAEKFIY---EKCSN 168
+ N+L++ S+ V + G +E E+ P++ Y ++K AE + + S+
Sbjct: 113 KCGVNILVYTSSAGVIFNGQDVHNADETWPIPEV-PMDAYNETKAIAEDMVLKANDPSSD 171
Query: 169 F--AILRSSIIYGPQTISPVP 187
F LR + I+GP VP
Sbjct: 172 FYTVALRPAGIFGPGDRQLVP 192
>TIGR_CMR|CJE_1273 [details] [associations]
symbol:CJE_1273 "UDP-glucose 4-epimerase" species:195099
"Campylobacter jejuni RM1221" [GO:0003978 "UDP-glucose 4-epimerase
activity" evidence=ISS] [GO:0006012 "galactose metabolic process"
evidence=ISS] InterPro:IPR001509 InterPro:IPR005886 Pfam:PF01370
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0044237
eggNOG:COG1087 HOGENOM:HOG000168001 GO:GO:0003978 GO:GO:0006012
InterPro:IPR025308 PANTHER:PTHR10366:SF39 Pfam:PF13950
TIGRFAMs:TIGR01179 KO:K01784 RefSeq:YP_179261.1
ProteinModelPortal:Q5HTX4 STRING:Q5HTX4 GeneID:3231780
KEGG:cjr:CJE1273 PATRIC:20044342 OMA:MMSERIL ProtClustDB:CLSK879103
BioCyc:CJEJ195099:GJC0-1299-MONOMER Uniprot:Q5HTX4
Length = 328
Score = 120 (47.3 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 40/162 (24%), Positives = 78/162 (48%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALP--HSFVFFDVDLK 62
++L+ GG GY+G H L+ + + +++ + + ++ ++ L +F FF+ DL
Sbjct: 2 KILISGGAGYIGSHTLRQFLKTD---HEICVLDNLSKGSKIAIEDLQKIRAFKFFEQDLS 58
Query: 63 SGSGFDAVALKFGQPDVVVNCAA-LSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN 121
G A+ + + D +V+ AA + V +N M+ V ++ N + + + N
Sbjct: 59 DFQGVKAL-FEREKFDAIVHFAASIEVFESMQNPLKYYMNNTVNTT--NLIETCLQTGVN 115
Query: 122 LLIHLSTDQVY-EGVKSFYKEEDEIAPVNVYGKSKVAAEKFI 162
I ST Y E E +AP+N YG+SK+ +E+ +
Sbjct: 116 KFIFSSTAATYGEPQTPVVSETSPLAPINPYGRSKLMSEEVL 157
>TIGR_CMR|CJE_1513 [details] [associations]
symbol:CJE_1513 "NAD-dependent epimerase/dehydratase
family protein" species:195099 "Campylobacter jejuni RM1221"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0009225
"nucleotide-sugar metabolic process" evidence=ISS]
InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
InterPro:IPR016040 eggNOG:COG0451 GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0050662 GO:GO:0009225 EMBL:CP000025 GenomeReviews:CP000025_GR
HOGENOM:HOG000167994 GO:GO:0008460 PANTHER:PTHR10366:SF41
RefSeq:YP_179498.1 ProteinModelPortal:Q5HT87 STRING:Q5HT87
GeneID:3232144 KEGG:cjr:CJE1513 PATRIC:20044818 OMA:EVFRLCC
ProtClustDB:CLSK864552 BioCyc:CJEJ195099:GJC0-1541-MONOMER
Uniprot:Q5HT87
Length = 323
Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
Identities = 54/187 (28%), Positives = 81/187 (43%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
K +LV G G++G HL + L + K + V A L S D+++ S
Sbjct: 2 KNILVTGADGFIGSHLCESLVK---KGFKVRALSQYNSFN--FWGHLEKSPFLKDMEVVS 56
Query: 64 GSGFDAVAL-KFGQP-DVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN 121
G D+ K + D + + AL P S + NV +L N L + +N+ +
Sbjct: 57 GDLRDSFFCEKITKNIDAIFHLGALIAIPYSYTAPQSYVDTNVNGTL-NMLEAAKKNEIS 115
Query: 122 LLIHLSTDQVYEGVKSFYKEEDE---IAPVNVYGKSKVAAEKFI---YEKCS-NFAILRS 174
IH ST +VY G +FY DE + P + Y SK+AA+ Y + N I R
Sbjct: 116 HFIHTSTSEVY-GT-AFYVPIDEKHPLQPQSPYSASKIAADMMALSYYNSFNLNVNIARP 173
Query: 175 SIIYGPQ 181
YGP+
Sbjct: 174 FNTYGPR 180
>TIGR_CMR|SO_1653 [details] [associations]
symbol:SO_1653 "dTDP-4-dehydrorhamnose reductase"
species:211586 "Shewanella oneidensis MR-1" [GO:0008831
"dTDP-4-dehydrorhamnose reductase activity" evidence=ISS]
[GO:0009103 "lipopolysaccharide biosynthetic process" evidence=ISS]
InterPro:IPR005913 Pfam:PF04321 InterPro:IPR016040 GO:GO:0000166
Gene3D:3.40.50.720 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0008831 GO:GO:0045226 KO:K00067 TIGRFAMs:TIGR01214
HOGENOM:HOG000227711 HSSP:P26392 RefSeq:NP_717264.1
ProteinModelPortal:Q8EGF1 GeneID:1169447 KEGG:son:SO_1653
PATRIC:23522945 OMA:ECALTGA ProtClustDB:CLSK906362 Uniprot:Q8EGF1
Length = 328
Score = 116 (45.9 bits), Expect = 0.00027, P = 0.00027
Identities = 38/120 (31%), Positives = 62/120 (51%)
Query: 69 AVALKFGQ--PDVVVNCAALSVPRVCENDPDSAMSIN-VPSSLVNWLSSFTENKENLLIH 125
+VA F Q PD V+NCAA + E D A +N + L+ + T + L+H
Sbjct: 52 SVAEVFAQVKPDWVINCAAYNAVDKAETAVDEAYRVNSLGPELLATECALTGAR---LVH 108
Query: 126 LSTDQVYEGV-----KSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAI-LRSSIIYG 179
+S+D V+ G+ + E +P++VYGKSK+A E+ + AI +R++ +YG
Sbjct: 109 ISSDYVFSGLLTGVEANALSETVTPSPLSVYGKSKLAGEQAVQRILGERAIVIRTAWLYG 168
>UNIPROTKB|P37761 [details] [associations]
symbol:rfbB "dTDP-glucose 4,6-dehydratase" species:485
"Neisseria gonorrhoeae" [GO:0008460 "dTDP-glucose 4,6-dehydratase
activity" evidence=ISS] [GO:0009103 "lipopolysaccharide
biosynthetic process" evidence=ISS] [GO:0045226 "extracellular
polysaccharide biosynthetic process" evidence=ISS]
InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
UniPathway:UPA00124 UniPathway:UPA00281 InterPro:IPR016040
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0009103
GO:GO:0045226 GO:GO:0009243 GO:GO:0008460 TIGRFAMs:TIGR01181
GO:GO:0019305 PANTHER:PTHR10366:SF41 EMBL:Z32742 EMBL:Z21508
PIR:S47045 ProteinModelPortal:P37761 SMR:P37761 Uniprot:P37761
Length = 346
Score = 115 (45.5 bits), Expect = 0.00039, P = 0.00039
Identities = 58/275 (21%), Positives = 119/275 (43%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSE-IEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDL 61
KK +LV GG G++G +++ + + ++ ++ L L A + F VD+
Sbjct: 6 KKNILVTGGAGFIGSAVVRHIIQNTRDSVVNLDKLTYAGNLESLTDIADNPRYAFEQVDI 65
Query: 62 KSGSGFDAVALKFGQPDVVVNCAALS-VPRVCENDPDSAMSINVPSSL-------VNWLS 113
+ D V ++ +PD V++ AA S V R + N+ + W
Sbjct: 66 CDRAELDRVFAQY-RPDAVMHLAAESHVDRAI-GSAGEFIRTNIVGTFDLLEAARAYWQQ 123
Query: 114 SFTENKENLLIH-LSTDQVY---EGVKSFYKEEDEIAPVNVYGKSKVAAEKFI--YEKCS 167
+E +E H +STD+VY G + E AP + Y SK AA+ + +++
Sbjct: 124 MPSEKREAFRFHHISTDEVYGDLHGTDDLFTETTPYAPSSPYSASKAAADHLVRAWQRTY 183
Query: 168 NFAILRSSII--YGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVK 223
+ S+ YGP+ P K +P+ ++++ G+ + + D + R ++V D +
Sbjct: 184 RLPSIVSNCSNNYGPRQF-P-EKLIPLMILNAL--SGKPLPVYGDGAQIRDWLFVEDHAR 239
Query: 224 IILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE 258
+ + + + N+GG + + +++ +
Sbjct: 240 ALYQVVTEGVVGETY-----NIGGHNEKTNLEVVK 269
>TIGR_CMR|CHY_0979 [details] [associations]
symbol:CHY_0979 "dTDP-glucose 4,6-dehydratase"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008460 "dTDP-glucose 4,6-dehydratase activity" evidence=ISS]
[GO:0009103 "lipopolysaccharide biosynthetic process" evidence=ISS]
[GO:0019305 "dTDP-rhamnose biosynthetic process" evidence=ISS]
InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0009225 GO:GO:0008460
TIGRFAMs:TIGR01181 eggNOG:COG1088 HOGENOM:HOG000168006 KO:K01710
PANTHER:PTHR10366:SF41 RefSeq:YP_359826.1 ProteinModelPortal:Q3ADF8
SMR:Q3ADF8 STRING:Q3ADF8 GeneID:3726804 KEGG:chy:CHY_0979
PATRIC:21275091 OMA:AEFRPEA ProtClustDB:CLSK2310403
BioCyc:CHYD246194:GJCN-978-MONOMER Uniprot:Q3ADF8
Length = 309
Score = 113 (44.8 bits), Expect = 0.00053, P = 0.00053
Identities = 59/229 (25%), Positives = 106/229 (46%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64
++LV GG G++G ++ + + + V ++ L ++ + + F+ D+
Sbjct: 2 KILVTGGAGFIGSAFVRKYA-YDHELIIVDKLTYAGDLRRI--EEVRDRIKFYKADVADK 58
Query: 65 SGFDAVALKFGQPDVVVNCAALS-VPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
+ + + K +P+ VV+ AA S V R + DP + NV + V +S E
Sbjct: 59 TAIEEIFDK-EKPEAVVHFAAESHVDRSIQ-DPTPFIETNVKGTQVMLDASRKYGIEKF- 115
Query: 124 IHLSTDQVYE--GVKSFYKEEDEIAPVNVYGKSKVAAEKFI--YEKCSNFAIL--RSSII 177
+H+STD+VY G + + EE + P + Y SK AA+ Y + ++ R
Sbjct: 116 VHISTDEVYGELGKEGQFTEESPLRPNSPYSVSKAAADMLARAYHRTYGLPVIVARPCNN 175
Query: 178 YGP----QTISPV--PKSLPIQWIDSVLSKGEKV-EFFH-DECRCPVYV 218
YGP + + PV K+L + I V +G V E+ + D+C VY+
Sbjct: 176 YGPWQYPEKLIPVVIKKALNNEPIP-VYGQGLNVREWLYVDDCIEAVYL 223
>SGD|S000000223 [details] [associations]
symbol:GAL10 "UDP-glucose-4-epimerase" species:4932
"Saccharomyces cerevisiae" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0004034 "aldose 1-epimerase activity"
evidence=IEA;IDA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016853
"isomerase activity" evidence=IEA] [GO:0006012 "galactose metabolic
process" evidence=IEA] [GO:0005975 "carbohydrate metabolic process"
evidence=IEA] [GO:0003978 "UDP-glucose 4-epimerase activity"
evidence=IEA;IMP;IDA] [GO:0033499 "galactose catabolic process via
UDP-galactose" evidence=IMP;IDA] [GO:0019318 "hexose metabolic
process" evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0008152 "metabolic process" evidence=IEA] [GO:0050662 "coenzyme
binding" evidence=IEA] [GO:0030246 "carbohydrate binding"
evidence=IEA] InterPro:IPR001509 InterPro:IPR005886
InterPro:IPR008183 InterPro:IPR011013 InterPro:IPR014718
Pfam:PF01263 Pfam:PF01370 UniPathway:UPA00214 UniPathway:UPA00242
InterPro:IPR016040 SGD:S000000223 GO:GO:0005829 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0030246 EMBL:BK006936
GO:GO:0044237 SUPFAM:SSF74650 GO:GO:0003978 InterPro:IPR025308
PANTHER:PTHR10366:SF39 Pfam:PF13950 TIGRFAMs:TIGR01179
Gene3D:2.70.98.10 eggNOG:COG2017 HOGENOM:HOG000247896 KO:K15917
OMA:CKDLWKW OrthoDB:EOG4NKG3T GO:GO:0004034 GO:GO:0033499
InterPro:IPR018052 PROSITE:PS00545 EMBL:Z35888 EMBL:X81324
EMBL:K02115 EMBL:M12348 EMBL:K01609 PIR:S45875 RefSeq:NP_009575.1
PDB:1Z45 PDBsum:1Z45 ProteinModelPortal:P04397 SMR:P04397
DIP:DIP-4891N MINT:MINT-526001 STRING:P04397 PeptideAtlas:P04397
PRIDE:P04397 EnsemblFungi:YBR019C GeneID:852307 KEGG:sce:YBR019C
CYGD:YBR019c GeneTree:ENSGT00530000063128 EvolutionaryTrace:P04397
NextBio:970981 Genevestigator:P04397 GermOnline:YBR019C
Uniprot:P04397
Length = 699
Score = 116 (45.9 bits), Expect = 0.00087, P = 0.00087
Identities = 56/187 (29%), Positives = 81/187 (43%)
Query: 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYD-VAATH--HSTPLPQLLLDALP-HSFVFF 57
+ K VLV GG GY+G H + L E G YD V A + +ST L+ L H F+
Sbjct: 10 TSKIVLVTGGAGYIGSHTVVELIE-NG--YDCVVADNLSNSTYDSVARLEVLTKHHIPFY 66
Query: 58 DVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTE 117
+VDL G + V ++ + D V++ A L P N+ ++V L +
Sbjct: 67 EVDLCDRKGLEKVFKEY-KIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVV-LLELMQQ 124
Query: 118 NKENLLIHLSTDQVYEGVKSF-----YKEEDEIAPVNVYGKSKVAAEKFI---Y---EKC 166
+ + S+ VY F EE + P N YG +K A E + Y +K
Sbjct: 125 YNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKS 184
Query: 167 SNFAILR 173
FAILR
Sbjct: 185 WKFAILR 191
>WB|WBGene00015298 [details] [associations]
symbol:C01F1.3 species:6239 "Caenorhabditis elegans"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0050662 "coenzyme
binding" evidence=IEA] [GO:0003854 "3-beta-hydroxy-delta5-steroid
dehydrogenase activity" evidence=IEA] [GO:0006694 "steroid
biosynthetic process" evidence=IEA] [GO:0016616 "oxidoreductase
activity, acting on the CH-OH group of donors, NAD or NADP as
acceptor" evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0009058 "biosynthetic process" evidence=IEA]
[GO:0008460 "dTDP-glucose 4,6-dehydratase activity" evidence=IEA]
[GO:0009225 "nucleotide-sugar metabolic process" evidence=IEA]
[GO:0008831 "dTDP-4-dehydrorhamnose reductase activity"
evidence=IEA] [GO:0045226 "extracellular polysaccharide
biosynthetic process" evidence=IEA] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0018991 "oviposition"
evidence=IMP] InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
InterPro:IPR016040 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0009225
GO:GO:0040011 GeneTree:ENSGT00530000063128 KO:K12450 GO:GO:0008460
eggNOG:COG1088 OMA:TARMNNI PANTHER:PTHR10366:SF41 HSSP:P26391
EMBL:FO080258 PIR:T15370 RefSeq:NP_001040727.1
ProteinModelPortal:Q17556 SMR:Q17556 STRING:Q17556
World-2DPAGE:0020:Q17556 PaxDb:Q17556 EnsemblMetazoa:C01F1.3a
GeneID:173762 KEGG:cel:CELE_C01F1.3 UCSC:C01F1.3a CTD:173762
WormBase:C01F1.3a HOGENOM:HOG000017218 InParanoid:Q17556
NextBio:880983 ArrayExpress:Q17556 Uniprot:Q17556
Length = 631
Score = 115 (45.5 bits), Expect = 0.00099, P = 0.00098
Identities = 49/206 (23%), Positives = 92/206 (44%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEI----EGKPYDVAATHHSTP-LPQLLLDALPHSFVFFD 58
K V++ GG G++G + + + + D + T + + + ++ + V
Sbjct: 6 KNVVITGGCGFIGSNFVNYIHDAWPTCNFVNIDKLILNSDTQNVAESVRNSPRYKLVL-- 63
Query: 59 VDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSF-TE 117
D+K+ + V + + D V++ AA C N+ A+ NV S + +L + T
Sbjct: 64 TDIKNEAAILNV-FEQNEIDTVIHFAADCTSTRCYNETAEAVQNNV-LSFIQFLETVRTY 121
Query: 118 NKENLLIHLSTDQVYEGVKSFYKEEDEI-----APVNVYGKSKVAAEKFI--YEKCSNFA 170
K +H+STD+VY E+ ++ P N Y +K+A E ++ Y+ N
Sbjct: 122 GKIKRFVHISTDEVYGDSDLSENEQGKVEFSRLVPGNPYAATKIAGEAYVRAYQTQYNLP 181
Query: 171 IL--RSSIIYGPQT--ISPVPKSLPI 192
I+ R + IYGP + VP+ + I
Sbjct: 182 IVTARMNNIYGPNQWDVKVVPRFIEI 207
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 300 300 0.00095 115 3 11 22 0.41 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 55
No. of states in DFA: 609 (65 KB)
Total size of DFA: 210 KB (2117 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.36u 0.14s 25.50t Elapsed: 00:00:01
Total cpu time: 25.37u 0.14s 25.51t Elapsed: 00:00:01
Start: Sat May 11 13:57:50 2013 End: Sat May 11 13:57:51 2013