BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022280
(300 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5BJJ6|MAT2B_DANRE Methionine adenosyltransferase 2 subunit beta OS=Danio rerio
GN=mat2b PE=2 SV=1
Length = 323
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 139/313 (44%), Gaps = 43/313 (13%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
+RVLV G TG LG+ + + E + +D ++ P F +L
Sbjct: 18 RRVLVTGATGLLGRAVYK---EFKNNDWDALGCGYNRARP-----------FFLKCNLLD 63
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
V F QP V+V+CAA P V E ++AM++NV + + E + L
Sbjct: 64 EDAVRGVIQSF-QPHVIVHCAAERRPDVVERHTEAAMNLNVHACA----TLAKEAGGSFL 118
Query: 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
I++STD V++G Y E D P+N+YGKSK+ E+ I C A+LR I++G +
Sbjct: 119 IYISTDYVFDGRNPPYGENDAPNPLNLYGKSKLEGEREILRHCPGAAVLRVPILFG--EV 176
Query: 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243
V +S + V E H + R P Y DV ++ + R L +D+ ++ +
Sbjct: 177 EKVEESAVTVLFERVQEGAESCTIDHCQQRFPTYTNDVARVCRNMAERAL-QDQSLRGIF 235
Query: 244 NVGGPDRVSRVQMA--------------------EVDRGVQSPADISMDITKL-VQTLNI 282
+ +++++ +M G Q P + ++ ++L + L++
Sbjct: 236 HYSAKEQMTKYEMTCAIADAFNLPSSHLIPMTEQPAGAGAQRPQNAQLECSRLELLGLSV 295
Query: 283 DPVTYKDGVKLTL 295
+ +K+ ++ +L
Sbjct: 296 ESTPFKNAIRDSL 308
>sp|Q5R4E0|MAT2B_PONAB Methionine adenosyltransferase 2 subunit beta OS=Pongo abelii
GN=MAT2B PE=2 SV=1
Length = 334
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 142/312 (45%), Gaps = 41/312 (13%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
+RVLV G TG LG+ + + E + + P+ F V+L
Sbjct: 29 RRVLVTGATGLLGRAVHK---EFQQNNWHAVGCGFRRARPK-----------FEQVNLLD 74
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
+ + F QP V+V+CAA P V EN PD+A +NV +S L+ L
Sbjct: 75 SNAVHHIIHDF-QPHVIVHCAAERRPDVVENQPDAASQLNVDAS--GNLAKEAAAVGAFL 131
Query: 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
I++S+D V++G Y+EED AP+N+YGK+K+ EK + E A+LR I+YG +
Sbjct: 132 IYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGAAVLRIPILYG--EV 189
Query: 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243
+ +S D V + H + R P +V+DV + L + + D ++
Sbjct: 190 EKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRML-DPSIKGTF 248
Query: 244 NVGGPDRVSRVQMAEVDR-------------------GVQSPADISMDITKLVQTLNIDP 284
+ G +++++ +MA G Q P + +D +KL +TL I
Sbjct: 249 HWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKL-ETLGIGQ 307
Query: 285 VT-YKDGVKLTL 295
T ++ G+K +L
Sbjct: 308 RTPFRIGIKESL 319
>sp|Q9NZL9|MAT2B_HUMAN Methionine adenosyltransferase 2 subunit beta OS=Homo sapiens
GN=MAT2B PE=1 SV=1
Length = 334
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 142/312 (45%), Gaps = 41/312 (13%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
+RVLV G TG LG+ + + E + + P+ F V+L
Sbjct: 29 RRVLVTGATGLLGRAVHK---EFQQNNWHAVGCGFRRARPK-----------FEQVNLLD 74
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
+ + F QP V+V+CAA P V EN PD+A +NV +S L+ L
Sbjct: 75 SNAVHHIIHDF-QPHVIVHCAAERRPDVVENQPDAASQLNVDAS--GNLAKEAAAVGAFL 131
Query: 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
I++S+D V++G Y+EED AP+N+YGK+K+ EK + E A+LR I+YG +
Sbjct: 132 IYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGAAVLRIPILYG--EV 189
Query: 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243
+ +S D V + H + R P +V+DV + L + + D ++
Sbjct: 190 EKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRML-DPSIKGTF 248
Query: 244 NVGGPDRVSRVQMAEVDR-------------------GVQSPADISMDITKLVQTLNIDP 284
+ G +++++ +MA G Q P + +D +KL +TL I
Sbjct: 249 HWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKL-ETLGIGQ 307
Query: 285 VT-YKDGVKLTL 295
T ++ G+K +L
Sbjct: 308 RTPFRIGIKESL 319
>sp|Q29RI9|MAT2B_BOVIN Methionine adenosyltransferase 2 subunit beta OS=Bos taurus
GN=MAT2B PE=2 SV=1
Length = 334
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 142/315 (45%), Gaps = 41/315 (13%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD 60
+ +RVL+ G TG LG+ + + E + + P+ F V+
Sbjct: 26 IPNRRVLITGATGLLGRAVYK---EFQQNNWHAVGCGFRRARPK-----------FEQVN 71
Query: 61 LKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE 120
L + + F QP V+V+CAA P V EN PD+A +NV +S L+
Sbjct: 72 LLDSNAVHHIIYDF-QPHVIVHCAAERRPDVVENHPDAASQLNVDAS--GNLAKEAAAIG 128
Query: 121 NLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGP 180
LI++S+D V++G Y+EED P+N+YGK+K+ EK + E A+LR ++YG
Sbjct: 129 AFLIYISSDYVFDGTNPPYREEDIPNPLNLYGKTKLEGEKAVLENNLGAAVLRIPVLYG- 187
Query: 181 QTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQ 240
+ + +S D V + H + R P +V+DV + L + + D ++
Sbjct: 188 -EVERLEESAVTIMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRML-DPSIK 245
Query: 241 LLLNVGGPDRVSRVQMAEVDR-------------------GVQSPADISMDITKLVQTLN 281
+ G +++++ +MA G Q P + +D ++L +TL
Sbjct: 246 GTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVVGAQRPRNAQLDCSRL-ETLG 304
Query: 282 IDPVT-YKDGVKLTL 295
I T ++ G+K +L
Sbjct: 305 IGQRTPFRIGIKESL 319
>sp|Q99LB6|MAT2B_MOUSE Methionine adenosyltransferase 2 subunit beta OS=Mus musculus
GN=Mat2b PE=2 SV=1
Length = 334
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 140/312 (44%), Gaps = 41/312 (13%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
+RVL+ G TG LG+ + + E + + P+ F V+L
Sbjct: 29 RRVLITGATGLLGRAVYK---EFQQSNWHTVGCGFRRARPK-----------FEQVNLLD 74
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
+ F QP V+V+CAA P V E+ PD+A +NV +S L+ L
Sbjct: 75 SEAVHHLIHDF-QPHVIVHCAAERRPDVVESQPDAASQLNVGAS--GNLAKEAAAIGAFL 131
Query: 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
I++S+D V++G Y EED +P+N+YGK+K+ EK + E A+LR ++YG +
Sbjct: 132 IYISSDYVFDGTNPPYTEEDIPSPLNLYGKTKLDGEKAVLENNLGAAVLRIPVLYG--EV 189
Query: 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243
+ +S D V + H + R P +V+DV + L + + D ++
Sbjct: 190 EKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVASVCRQLAEKRML-DPSIKGTF 248
Query: 244 NVGGPDRVSRVQMAEVDR-------------------GVQSPADISMDITKLVQTLNIDP 284
+ G +++++ +MA G Q P + +D +KL +TL I
Sbjct: 249 HWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVIGAQRPKNAQLDCSKL-ETLGIGQ 307
Query: 285 VT-YKDGVKLTL 295
T ++ G+K +L
Sbjct: 308 RTPFRTGIKESL 319
>sp|Q5U2R0|MAT2B_RAT Methionine adenosyltransferase 2 subunit beta OS=Rattus norvegicus
GN=Mat2b PE=2 SV=1
Length = 334
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 140/312 (44%), Gaps = 41/312 (13%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
+RVL+ G TG LG+ + + E + + P+ F V+L
Sbjct: 29 RRVLITGATGLLGRAVYK---EFQQSNWHAVGCGFRRARPK-----------FEQVNLLD 74
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
+ F QP V+V+CAA P V E+ PD+A +NV +S L+ L
Sbjct: 75 SEAVHHLIHDF-QPHVIVHCAAERRPDVVESQPDAASQLNVGAS--GNLAKEAAAIGAFL 131
Query: 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
I++S+D V++G Y EED +P+N+YGK+K+ EK + E A+LR ++YG +
Sbjct: 132 IYISSDYVFDGTNPPYTEEDIPSPLNLYGKTKLDGEKAVLENNLGAAVLRIPVLYG--EV 189
Query: 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243
+ +S D V + H + R P +V+DV + L + + D ++
Sbjct: 190 EKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVASVCRQLAEKRML-DPSIKGTF 248
Query: 244 NVGGPDRVSRVQMAEVDR-------------------GVQSPADISMDITKLVQTLNIDP 284
+ G +++++ +MA G Q P + +D +KL +TL I
Sbjct: 249 HWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVIGAQRPKNAQLDCSKL-ETLGIGQ 307
Query: 285 VT-YKDGVKLTL 295
T ++ G+K +L
Sbjct: 308 RTPFRIGIKESL 319
>sp|Q566L8|MAT2B_XENTR Methionine adenosyltransferase 2 subunit beta OS=Xenopus tropicalis
GN=mat2b PE=2 SV=1
Length = 334
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 123/253 (48%), Gaps = 20/253 (7%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
+R L+ G TG LG+ + + E + + V +S P+ F ++L
Sbjct: 29 RRALITGATGLLGRAVYK---EFKENSWHVLGCGYSRARPR-----------FEYLNLLD 74
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
+ A+ F +P V+++CAA P + E+ P+ A +NV +S L+ L
Sbjct: 75 AAAVKALIQDF-KPHVIIHCAAERRPDIVESQPEFASLLNVVAS--ENLAKEAAGVGAFL 131
Query: 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
I++S+D V++G Y+E+ P+N+YGK+K+ E+ + A+LR ++YG +
Sbjct: 132 IYVSSDYVFDGTSPPYREDSVPNPLNLYGKTKLEGERAVLHNNEGAAVLRVPVLYG--DV 189
Query: 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243
+ +S D V + H + R P YV+DV + L LT R L +D ++ +
Sbjct: 190 EKLSESAVTILFDKVQFSNKSANMDHWQQRFPTYVKDVASVCLQLTERRL-QDPSIKGIY 248
Query: 244 NVGGPDRVSRVQM 256
+ G +++++ +M
Sbjct: 249 HWSGNEQMTKYEM 261
>sp|Q4QQZ4|MAT2B_XENLA Methionine adenosyltransferase 2 subunit beta OS=Xenopus laevis
GN=mat2b PE=2 SV=1
Length = 334
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 125/254 (49%), Gaps = 20/254 (7%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
+R L+ G TG LG+ + + E + + V +S P+ F ++L
Sbjct: 29 RRALITGATGLLGRAVYK---EFKENSWHVLGCGYSRARPR-----------FECLNLLD 74
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
+ A+ F +P V+++CAA P + E+ P+ A +NV +S L+ L
Sbjct: 75 EAAVKALIQDF-KPHVIIHCAAERRPDIVESQPELASLLNVVAS--ENLAKVAAGVGAFL 131
Query: 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
I++S+D V++G Y+E+ P+N+YGK+K+ E+ + + A+LR ++YG +
Sbjct: 132 IYVSSDYVFDGTSPPYREDSIPHPLNLYGKTKLDGERAVLQNNEGAAVLRVPVMYG--DV 189
Query: 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243
+ +S D V + H + R P +V+DV + L LT R + +D ++ +
Sbjct: 190 EKLSESAVTILFDKVQFSNKSANLDHCQQRFPTHVKDVATVCLQLTERKI-QDPSIKGIY 248
Query: 244 NVGGPDRVSRVQMA 257
+ G +++++ ++A
Sbjct: 249 HWSGNEQMTKYEIA 262
>sp|P39631|SPSK_BACSU Spore coat polysaccharide biosynthesis protein SpsK OS=Bacillus
subtilis (strain 168) GN=spsK PE=3 SV=3
Length = 283
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 101/230 (43%), Gaps = 41/230 (17%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLD-----ALPHSFVFFDV 59
+VLV G G LG L + L + Y+V A L + +++ ++ HSF +
Sbjct: 3 KVLVTGAGGQLGLELCRQLKQ---AGYEVIA------LTKKMMNIADQRSVRHSFGHY-- 51
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK 119
QPD+VVN AA + CE + D A IN + L S
Sbjct: 52 ----------------QPDIVVNSAAFTSVDQCEKELDKAYLINGIGAYYTALESTRIGA 95
Query: 120 ENLLIHLSTDQVYEGVKSF-YKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIY 178
+ +H+STD V+ G + Y+E+D + P +YGKSK E+ I + I+R+S +Y
Sbjct: 96 Q--YVHISTDYVFNGKGTQPYREDDPLDPKTIYGKSKRLGEELIRLTTKDSTIIRTSWVY 153
Query: 179 GPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILAL 228
G + V L + +++ D+ P Y +D+ + ++ L
Sbjct: 154 GHGGSNFVETMLKLA------ETKQELRVVSDQIGSPTYTKDLAEAVIKL 197
>sp|P55463|RMLD_RHISN Probable dTDP-4-dehydrorhamnose reductase OS=Rhizobium sp. (strain
NGR234) GN=NGR_a03570 PE=3 SV=1
Length = 296
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 89/192 (46%), Gaps = 10/192 (5%)
Query: 69 AVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLST 128
A +++ PD++V+ AA + E++P A ++N V L+ +IHLST
Sbjct: 43 ASSIRDAAPDIIVSLAAYTAVDKAESEPYEAFAVNRDG--VQALAEAAAGLGVPVIHLST 100
Query: 129 DQVYEGVKSF-YKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVP 187
D V++G K Y EED P++VYG+SK+ E + N ILR+S +Y + V
Sbjct: 101 DYVFDGAKPVPYCEEDRTGPISVYGRSKLEGEFAVASANPNHTILRTSWVYSRYGQNFVK 160
Query: 188 KSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDK-QMQLLLNVG 246
K L + +++ D+ CP D+ ++ + R LS ++ + ++
Sbjct: 161 KMLRLA------DTNDELNVVADQLGCPTSADDISVAVMTIARRMLSSSSADLRGIFHLS 214
Query: 247 GPDRVSRVQMAE 258
G S A+
Sbjct: 215 GSGEASWAAFAK 226
>sp|A0QTF8|RMLD_MYCS2 dTDP-4-dehydrorhamnose reductase OS=Mycobacterium smegmatis (strain
ATCC 700084 / mc(2)155) GN=rmlD PE=1 SV=1
Length = 327
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 15/168 (8%)
Query: 68 DAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINV--PSSLVNWLSSFTENKENLLIH 125
DAV DVV+NCAA + E++P+ A ++N P +L ++ LIH
Sbjct: 74 DAVRRFVANGDVVINCAAYTQVDKAEDEPERAHAVNAVGPGNLAKACAAVDAG----LIH 129
Query: 126 LSTDQVYEGVK--SFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
+STD V+ V + Y+ +DE PVN+YG++K+A E+ + + ++R++ +Y
Sbjct: 130 ISTDYVFGAVDRDTPYEVDDETGPVNIYGRTKLAGEQAVLAAKPDAYVVRTAWVYRGGDG 189
Query: 184 SPVPKSLPIQWIDSVLSKGE-KVEFFHDECRCPVYVRDVVKIILALTN 230
S ++ L+ G+ ++ D+ P Y D+V +L + +
Sbjct: 190 SDFVATM------RRLAAGDGAIDVVADQVGSPTYTGDLVGALLQIVD 231
>sp|P26392|RMLD_SALTY dTDP-4-dehydrorhamnose reductase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=rfbD PE=1 SV=1
Length = 299
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGV 135
+PDV+VN AA + E++P+ A +N S V ++ ++H STD V+ G
Sbjct: 54 RPDVIVNAAAHTAVDKAESEPELAQLLNATS--VEAIAKAANETGAWVVHYSTDYVFPGT 111
Query: 136 KSF-YKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYG 179
++E D +P+NVYGK+K+A EK + + C I R+S +Y
Sbjct: 112 GDIPWQETDATSPLNVYGKTKLAGEKALQDNCPKHLIFRTSWVYA 156
>sp|P37760|RMLD_ECOLI dTDP-4-dehydrorhamnose reductase OS=Escherichia coli (strain K12)
GN=rfbD PE=3 SV=2
Length = 299
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGV 135
+PD++VN AA + E++P+ A IN S V ++ +IH STD V+ G
Sbjct: 54 RPDIIVNAAAHTAVDKAESEPEFAQLINATS--VEAIAKAANEVGAWVIHYSTDYVFPGN 111
Query: 136 KSF-YKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYG 179
+ E D AP+NVYG++K+A EK + E C+ I R+S +Y
Sbjct: 112 GDMPWLETDATAPLNVYGETKLAGEKALQEYCAKHLIFRTSWVYA 156
>sp|P37778|RMLD_SHIFL dTDP-4-dehydrorhamnose reductase OS=Shigella flexneri GN=rfbD PE=1
SV=2
Length = 299
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 22/175 (12%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGS 65
+L+ G TG +G L + L+ PL L+ AL + D +
Sbjct: 3 ILLFGKTGQVGWELQRALA----------------PLGNLI--ALDVHSTDYCGDFSNPE 44
Query: 66 GFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIH 125
G A +K +PDV+VN AA + E++P+ A +N ++ V ++ +IH
Sbjct: 45 GV-AETVKKIRPDVIVNAAAHTAVDKAESEPNFAQLLN--ATCVEAIAKAANEVGAWVIH 101
Query: 126 LSTDQVYEGV-KSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYG 179
STD V+ G + + E D AP+NVYG++K+A EK + E C+ I R+S +Y
Sbjct: 102 YSTDYVFPGNGDTPWLETDATAPLNVYGETKLAGEKALQEHCAKHLIFRTSWVYA 156
>sp|Q46769|RMLD_ECOLX dTDP-4-dehydrorhamnose reductase OS=Escherichia coli GN=rfbD PE=1
SV=1
Length = 301
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 5/106 (4%)
Query: 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGV 135
+PDV+VN AA + E++P+ A +N S V ++ +IH STD V+ G
Sbjct: 54 RPDVIVNAAAHTDVDKAESEPEFAQLLNATS--VEAIAKAANEVGAWVIHYSTDYVFPGT 111
Query: 136 KS--FYKEEDEIAPVNVYGKSKVAAEKFIYEK-CSNFAILRSSIIY 178
+ D AP+NVYG++K+++EK +K C I R+S +Y
Sbjct: 112 GEIPWQGGTDATAPLNVYGETKLSSEKKALQKHCGKHIIFRTSWVY 157
>sp|P29781|RMLD_STRGR dTDP-4-dehydrorhamnose reductase OS=Streptomyces griseus GN=strL
PE=1 SV=1
Length = 304
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 26/179 (14%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK 62
+ R LV G +G LG+ L L + G H +D+
Sbjct: 6 RPRWLVTGASGMLGRELTP-LLDRRGAAVTALGRGH--------------------LDIT 44
Query: 63 SGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL 122
G+ + + +P VVVNCAA + E++P AM++N L+ +
Sbjct: 45 DGAAVRSAVAEH-RPAVVVNCAAWTAVDEAESEPALAMAVN--GEGPRHLAQACRAVGAV 101
Query: 123 LIHLSTDQVYEGVKSF-YKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFA-ILRSSIIYG 179
L+ LSTD V+ G Y+E+ P VYG +K A E+ + E + I+R++ +YG
Sbjct: 102 LLQLSTDYVFPGSGGRPYREDHPTGPRTVYGCTKRAGERAVLEVLPDTGYIVRTAWLYG 160
>sp|O95455|TGDS_HUMAN dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=TGDS PE=2 SV=1
Length = 350
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 122/275 (44%), Gaps = 42/275 (15%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKP----YDVAATHHSTPLPQLLLDALPHSFVFFDV 59
KRVLV GG G++ H++ L +E P ++ + L L + ++ F
Sbjct: 18 KRVLVTGGAGFIASHMIVSL--VEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQG 75
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAA-----LSVPRVCENDPDSAMSINVPSSLVNWLSS 114
D+ S F + + + D+V++ AA LS R E +NV + V +S+
Sbjct: 76 DI-CDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFE-----FTYVNVYGTHV-LVSA 128
Query: 115 FTENKENLLIHLSTDQVYEGVKSFYKEEDEIA---PVNVYGKSKVAAEKFIYEKCSNF-- 169
E + I++STD+VY G S KE DE + P N Y SK AAE F+ +
Sbjct: 129 AHEARVEKFIYVSTDEVYGG--SLDKEFDESSPKQPTNPYASSKAAAECFVQSYWEQYKF 186
Query: 170 --AILRSSIIYGPQTISP--VPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVK 223
I RSS +YGP +PK + S+L K + R +Y DVV+
Sbjct: 187 PVVITRSSNVYGPHQYPEKVIPKFI------SLLQHNRKCCIHGSGLQTRNFLYATDVVE 240
Query: 224 IILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE 258
L + L + K + + N+G +S VQ+A+
Sbjct: 241 AFLTV----LKKGKPGE-IYNIGTNFEMSVVQLAK 270
>sp|O34886|YTCB_BACSU Uncharacterized UDP-glucose epimerase YtcB OS=Bacillus subtilis
(strain 168) GN=ytcB PE=3 SV=1
Length = 316
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 78/320 (24%), Positives = 134/320 (41%), Gaps = 42/320 (13%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDV-------AATHHSTPLPQLLLDALPHSFVFF 57
++LV G G++G HL + L ++ K ++V T S L L F F
Sbjct: 2 KILVTGAAGFIGSHLCEEL--LKDKKHNVIGIDDFIGPTPFSLKLKNLKNLLPEKRFTFI 59
Query: 58 DVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTE 117
+L + D +L G DV+ + AA+ R + + + +L L + E
Sbjct: 60 KENLLTA---DLASLLEGV-DVIFHLAAIPGVRSSWGNHFHPYAAHNIQALQRLLEACRE 115
Query: 118 NKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFA----ILR 173
+ + ST VY + E ++P++ YG +K+ EK + +F ILR
Sbjct: 116 HSIQTFVFASTSSVYGEKQGKVSENTSLSPLSPYGVTKLTGEKLCHVYKQSFGIPIVILR 175
Query: 174 SSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILALTNR 231
+YGP+ P + I L + + + F D + R Y+ D VK I A+
Sbjct: 176 FFTVYGPRQ---RPDMAFHRLIKQHLQQ-KPLTIFGDGQQSRDFTYISDCVKGITAV--- 228
Query: 232 WLSEDKQMQLLLNVGGPDRVSRVQMAEV--------------DRGVQSPADISMDITKLV 277
L + + +N+GG +R S +++ + D+ P++ DI+K
Sbjct: 229 -LGKPHLIGETVNIGGAERASVLKVVSLIEDISGRKATLHFSDKIAGEPSNTWADISKAK 287
Query: 278 QTLNIDPVT-YKDGVKLTLA 296
Q L+ DP T KDG+ +A
Sbjct: 288 QLLHYDPATSLKDGLTNEIA 307
>sp|A6QLW2|TGDS_BOVIN dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TGDS PE=2 SV=1
Length = 355
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 125/273 (45%), Gaps = 38/273 (13%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKP----YDVAATHHSTPLPQLLLDALPHSFVFFDV 59
KRVLV GG G++ H++ L +E P ++ + L L + ++ F
Sbjct: 18 KRVLVTGGAGFIASHMIVSL--VEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQG 75
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAA-----LSVPRVCENDPDSAMSINVPSSLVNWLSS 114
D+ S F + + + D+V++ AA LS R E +NV + V +S+
Sbjct: 76 DI-CDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFE-----FTYVNVYGTHV-LVSA 128
Query: 115 FTENKENLLIHLSTDQVYEGVKSFYKEEDEIA---PVNVYGKSKVAAEKFIYEKCSNF-- 169
E + I++STD+VY G S KE DE + P N Y SK AAE F+ +
Sbjct: 129 AHEARVEKFIYVSTDEVYGG--SLDKEFDESSPKQPTNPYASSKAAAECFVQSYWEQYKF 186
Query: 170 --AILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEK--VEFFHDECRCPVYVRDVVKII 225
I RSS +YGP P+ + ++I S+L K + + R +Y DVV+
Sbjct: 187 PVVITRSSNVYGPHQ---YPEKVIPKFI-SLLQHNRKCCIHGTGLQTRNFLYATDVVEAF 242
Query: 226 LALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE 258
L + L + K + + N+G +S +Q+A+
Sbjct: 243 LTV----LKKGKPGE-IYNIGTNFEMSVLQLAK 270
>sp|P96871|RMLD_MYCTU dTDP-4-dehydrorhamnose reductase OS=Mycobacterium tuberculosis
GN=rmlD PE=1 SV=1
Length = 304
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 11/108 (10%)
Query: 78 DVVVNCAALSVPRVCENDPDSAMSINV--PSSLVNWLSSFTENKENLLIHLSTDQVYEG- 134
DVV+NCAA + E++ A ++N P L + LIH+STD V++G
Sbjct: 56 DVVINCAAYTDVDGAESNEAVAYAVNATGPQHLARACARVGAR----LIHVSTDYVFDGD 111
Query: 135 ----VKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIY 178
Y+ DE AP VY +SK+A E+ + A++R++ +Y
Sbjct: 112 FGGAEPRPYEPTDETAPQGVYARSKLAGEQAVLAAFPEAAVVRTAWVY 159
>sp|B8CVJ3|HLDD_SHEPW ADP-L-glycero-D-manno-heptose-6-epimerase OS=Shewanella
piezotolerans (strain WP3 / JCM 13877) GN=hldD PE=3 SV=1
Length = 317
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 119/254 (46%), Gaps = 29/254 (11%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQL--LLDALPHSFVFFDVDLKS 63
++V G G++G +L++ L+++ G+ D+ A T ++ L D ++ D L+
Sbjct: 2 IVVTGAAGFIGSNLVKALNDM-GRN-DIIAVDDLTDGTKMFNLADCEIADYLDKDQFLEQ 59
Query: 64 GSGFDAVALKF-GQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL 122
+A +F G+ +V+ + A S E D MS N S L F + +
Sbjct: 60 -----IIAGEFDGKIEVIFHQGACS--STTEWDGKFMMSNNYEYSKT--LLQFCDRTKCQ 110
Query: 123 LIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSN--FAILRSSIIYGP 180
I+ S+ VY G + F ++ D P+NVY SK ++++ ++ N A LR +YGP
Sbjct: 111 YIYASSASVYGGSEKFIEQRDLEKPLNVYAYSKFLFDQYVRQQKPNCQVAGLRYFNVYGP 170
Query: 181 QTISPVP-KSLPIQWIDSVLSKG-----EKVEFFHD--ECRCPVYVRDVVKIILALTNRW 232
+ S+ + + + + G E V+ + + + R VYV DVVK+ N W
Sbjct: 171 REQHKGGMASVAFHFNNQLNANGICRLFEGVDGYENGQQLRDFVYVEDVVKV-----NLW 225
Query: 233 LSEDKQMQLLLNVG 246
L ++ ++ + N G
Sbjct: 226 LWQNSEVSGIFNCG 239
>sp|Q8VDR7|TGDS_MOUSE dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=Tgds PE=2 SV=2
Length = 355
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 121/273 (44%), Gaps = 38/273 (13%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKP----YDVAATHHSTPLPQLLLDALPHSFVFFDV 59
KRVLV GG G++ H++ L +E P ++ + L L + ++ F
Sbjct: 18 KRVLVTGGAGFIASHVIVSL--VEDYPDYMIVNLDKLDYCASLKNLEPVSNKQNYKFIQG 75
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAA-----LSVPRVCENDPDSAMSINVPSSLVNWLSS 114
D+ S F + + + D+V++ AA LS R E +NV + V ++
Sbjct: 76 DI-CDSHFVKLLFEVEKIDIVLHFAAQTHVDLSFVRAFE-----FTYVNVYGTHVLVNAA 129
Query: 115 FTENKENLLIHLSTDQVYEGVKSFYKEEDEIA---PVNVYGKSKVAAEKFIYEKCSNF-- 169
+ E I++STD+VY G S +E DE + P N Y SK AAE F+ +
Sbjct: 130 YEAGVEK-FIYVSTDEVYGG--SLDQEFDESSPKQPTNPYASSKAAAECFVQSYWERYKF 186
Query: 170 --AILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKII 225
I RSS +YGP P+ + ++I S+L K + R +Y DVV+
Sbjct: 187 PVVITRSSNVYGPHQY---PEKVIPKFI-SLLQHNRKCCIHGSGLQRRNFLYAADVVEAF 242
Query: 226 LALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAE 258
L + + + + N+G +S VQ+A+
Sbjct: 243 LTVLTK-----GEPGEIYNIGTNFEMSVVQLAK 270
>sp|P55462|RFBB_RHISN Probable dTDP-glucose 4,6-dehydratase OS=Rhizobium sp. (strain
NGR234) GN=NGR_a03580 PE=3 SV=1
Length = 350
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 11/167 (6%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64
R+LV GG G++G L++ L I + +V ++ L L ++ F D+
Sbjct: 2 RILVTGGAGFIGSALVRYLVSINAEVLNVDKLTYAGNLASLKPVEGLRNYRFLRADICDR 61
Query: 65 SGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLV------NWLSSFTEN 118
+ F QPD V++ AA S D + NV + + S+ ++N
Sbjct: 62 VAINEAFETF-QPDYVIHLAAESHVDRSITGADDFVQTNVNGTFTMLETARQYWSNLSQN 120
Query: 119 KENL--LIHLSTDQVYE--GVKSFYKEEDEIAPVNVYGKSKVAAEKF 161
++ ++H+STD+VY G + ++E P + Y SK A++ F
Sbjct: 121 RKAFFKMLHVSTDEVYGSLGDRGQFEEVSPYDPSSPYSASKAASDHF 167
>sp|Q59083|EXOB_AZOBR UDP-glucose 4-epimerase OS=Azospirillum brasilense GN=exoB PE=3
SV=1
Length = 348
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 82/195 (42%), Gaps = 46/195 (23%)
Query: 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPY----DVAATHHSTPLPQLLLDALPHSFVFF 57
+ RVLV GG GY+G H+L L++ G P D++A +A+P +
Sbjct: 7 ASPRVLVTGGAGYIGSHVLHALTD-AGIPAVTIDDLSAGRR---------EAIPAAVPLV 56
Query: 58 DVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTE 117
+ D+ S D V ++ + D V++ A SI VP S+V L +
Sbjct: 57 EGDIGSAELLDRV-MRDHRVDAVMHFAG---------------SIVVPESVVKPLDYYRN 100
Query: 118 NKENLLIHL--------------STDQVYEGVKSF-YKEEDEIAPVNVYGKSKVAAEKFI 162
N N L L ST VY +S +E+ P+N YG SK+ E+ +
Sbjct: 101 NTANSLTLLGACLRAGIDKVVFSSTAAVYGAPESVPIREDAPTVPINPYGASKLMTEQML 160
Query: 163 YEKCSNFAILRSSII 177
+ + LRS I+
Sbjct: 161 RDAGAAHG-LRSVIL 174
>sp|P27830|RMLB2_ECOLI dTDP-glucose 4,6-dehydratase 2 OS=Escherichia coli (strain K12)
GN=rffG PE=1 SV=3
Length = 355
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 115/272 (42%), Gaps = 24/272 (8%)
Query: 4 KRVLVVGGTGYLGQHLLQG-LSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK 62
+++L+ GG G++G L++ ++E V ++ L L A F F VD+
Sbjct: 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDIC 61
Query: 63 SGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLV------NWLSSFT 116
+ V + QPD V++ AA S + P + + N+ + + ++ T
Sbjct: 62 DRAELARVFTEH-QPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALT 120
Query: 117 ENKENLLI--HLSTDQVYEGVKS---FYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFA- 170
E+K++ H+STD+VY + S F+ E AP + Y SK +++ + +
Sbjct: 121 EDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYGL 180
Query: 171 ---ILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILA 227
I S YGP K +P+ ++++ K V + R +YV D + +
Sbjct: 181 PTLITNCSNNYGPYHFP--EKLIPLMILNALAGKSLPVYGNGQQIRDWLYVEDHARALYC 238
Query: 228 LTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEV 259
++ ++ N+GG + + + E
Sbjct: 239 -----VATTGKVGETYNIGGHNERKNLDVVET 265
>sp|Q331Q7|GERKI_STRSQ dTDP-4-dehydro-6-deoxyglucose reductase OS=Streptomyces sp.
GN=gerKI PE=1 SV=1
Length = 326
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 149/329 (45%), Gaps = 54/329 (16%)
Query: 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS-TPLPQLLLDALPHSFVFFDVD 60
+ + VLV G G++G H ++ +++ + +V A + + P Q L AL + +
Sbjct: 7 AGRTVLVTGALGFIGSHFVR---QLDARGAEVLALYRTERPEIQAELAAL-NRVRLVRTE 62
Query: 61 LKSGSGFDAVALKFGQP--DVVVNCAAL------SVPRVCENDPDSAMSINVPSSLVNWL 112
L+ S A K+ P D VV+CAA+ + R E + +I S+L+N +
Sbjct: 63 LRDESDVRG-AFKYLAPSIDTVVHCAAMDGNAQFKLERSAEILDSNQRTI---SNLLNCV 118
Query: 113 SSFTENKENLLIHLSTDQVYEGVKSF-YKEEDEIAPV-----NVYGKSKVAAE---KFIY 163
F + ++ +S+ ++Y + +EED+ N Y SK E +
Sbjct: 119 RDFGVGE---VVVMSSSELYSASPTVAAREEDDFRRSMRYTDNGYVLSKTYGEILARLHR 175
Query: 164 EK-CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRD 220
E+ +N ++R +YGP + I + + GE++E + D + R V+V D
Sbjct: 176 EQFGTNVFLVRPGNVYGPGDGFDCSRGRVIPSMLAKADAGEEIEIWGDGSQTRSFVHVAD 235
Query: 221 VVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEV---------------DRGVQS 265
+V+ L R L K + +NV G ++VS +++A + R V +
Sbjct: 236 LVRASL----RLLETGKYPE--MNVAGAEQVSILELAGMVMAVLGRPERIRLDPSRPVGA 289
Query: 266 PADISMDITKLVQTLNIDPVTYKDGVKLT 294
P+ + +D++++ + ++ DP + G++ T
Sbjct: 290 PSRL-LDLSRMSEVIDFDPQPLRAGLEET 317
>sp|Q57664|GALE_METJA Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0211 PE=3 SV=1
Length = 305
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 103/237 (43%), Gaps = 17/237 (7%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGS 65
+LV GG G++G H++ L E YDV + T + ++ F + D++
Sbjct: 2 ILVTGGAGFIGSHIVDKLIE---NNYDVIILDNLTTGNKNNINPKAE---FVNADIRD-K 54
Query: 66 GFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIH 125
D + F +VV++ AA R +P INV + +N L + + ++
Sbjct: 55 DLDE-KINFKDVEVVIHQAAQINVRNSVENPVYDGDINVLGT-INILEMMRKYDIDKIVF 112
Query: 126 LSTDQVYEGVKSFY--KEEDEIAPVNVYGKSKVAAEKFI--YEKCSN--FAILRSSIIYG 179
S+ G ++ E I P++ YG SK E++I Y + +AILR S +YG
Sbjct: 113 ASSGGAVYGEPNYLPVDENHPINPLSPYGLSKYVGEEYIKLYNRLYGIEYAILRYSNVYG 172
Query: 180 PQTISPVPKSLPIQWIDSVLSKGEKVEFFH-DECRCPVYVRDVVKIILALTNRWLSE 235
+ + +ID +L + F ++ R VYV DV K L N W +E
Sbjct: 173 ERQDPKGEAGVISIFIDKMLKNQSPIIFGDGNQTRDFVYVGDVAKANLMALN-WKNE 228
>sp|A3QJB2|HLDD_SHELP ADP-L-glycero-D-manno-heptose-6-epimerase OS=Shewanella loihica
(strain ATCC BAA-1088 / PV-4) GN=hldD PE=3 SV=1
Length = 317
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 111/255 (43%), Gaps = 31/255 (12%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFD----VDL 61
++V G G++G +L++ L+ + G+ D+ A T ++ A + D ++
Sbjct: 2 IIVTGAAGFIGSNLVKALNNL-GRS-DIIAVDDLTDGTKMFNLADCEIADYLDKADFIEQ 59
Query: 62 KSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN 121
+ FD G+ +V+ + A S E D M+ N S L F E +
Sbjct: 60 IAQGQFD------GKVEVIFHQGACS--STTEWDGKFMMANNYEYSKT--LLHFCERNGS 109
Query: 122 LLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEK--CSNFAILRSSIIYG 179
I+ S+ VY G F ++ + P+NVY SK ++++ + + A LR +YG
Sbjct: 110 QFIYASSASVYGGSDKFIEQRELEKPLNVYAYSKFLFDQYVRQHNFTTQVAGLRYFNVYG 169
Query: 180 PQTISPVP-KSLPIQWIDSVLSKG-----EKVEFFHD--ECRCPVYVRDVVKIILALTNR 231
P+ S+ + + + + G + + F D + R VYV DVVK+ N
Sbjct: 170 PREQHKGGMASVAFHFNNQIKASGICRLFQGHDGFEDGKQLRDFVYVEDVVKV-----NL 224
Query: 232 WLSEDKQMQLLLNVG 246
WL ++ + + N G
Sbjct: 225 WLWQNPGISGVYNCG 239
>sp|Q58461|Y1061_METJA Uncharacterized membrane protein MJ1061 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1061 PE=3 SV=1
Length = 333
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 103/232 (44%), Gaps = 35/232 (15%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
K +LV GGTG +G+ +++ L + K V + T L +L + F D++
Sbjct: 12 KTILVTGGTGSIGKEIVKTLLKFNPKTIRVLDINE-TALFELEHELNSEKIRCFIGDVRD 70
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
D + + DVV + AAL +CE +P A+ NV + N + + +
Sbjct: 71 K---DRLKRAIEEVDVVFHAAALKHVPLCEYNPFEAVKTNVIGTQ-NLIEVAMDEEVEKF 126
Query: 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKF-----IY--EKCSNFAILR-SS 175
I +STD+ + PVNV G +K+ AE+ +Y ++ + F+++R +
Sbjct: 127 ITISTDKA-------------VNPVNVMGATKLLAERLTISANLYKGKRKTAFSVVRFGN 173
Query: 176 IIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH-DECRCPVYVRDVVKIIL 226
++ +I P+ K + KG V H D R + + + VK++L
Sbjct: 174 VLNSRGSILPLLKEQ--------IKKGGPVTLTHPDMTRFIMSINEAVKLVL 217
>sp|Q21Y60|HLDD_RHOFD ADP-L-glycero-D-manno-heptose-6-epimerase OS=Rhodoferax
ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)
GN=hldD PE=3 SV=1
Length = 340
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 111/269 (41%), Gaps = 48/269 (17%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPY----DVAATHHSTPLPQLLLDALPHSFVFFDVD 60
R++V G G++G +++QGL+ D+ L L + + VF+D+
Sbjct: 3 RIVVTGAAGFIGSNIIQGLNARGLNDIIAIDDLTQGDKFRNLAHLKISDYVDASVFYDL- 61
Query: 61 LKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE 120
+G+ +GQ + V + A S E++ M N +S VN + + +
Sbjct: 62 FANGA--------YGQIEAVFHEGACS--DTMESNGKYMMDNNYATS-VNLFQA-CQKRG 109
Query: 121 NLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSI---- 176
L++ S+ Y G +F ++ P+NVYG SK+ ++ + +C N R S+
Sbjct: 110 ARLLYASSAATYGGSDTFREDPAFERPLNVYGYSKLLFDQRMRRECGN--DFRRSVAGKT 167
Query: 177 ----------IYGP-QTISPVPKSLPIQWIDSVLSKGEKVEFFHD--------ECRCPVY 217
+YGP + S+ ++G KV+ F D + R ++
Sbjct: 168 GQVVGFRYFNVYGPHEQHKGRMASVAFHQFHQFQAEG-KVKLFADYGGYAAGAQMRDFIF 226
Query: 218 VRDVVKIILALTNRWLSEDKQMQLLLNVG 246
+ DVV + N W + + + N+G
Sbjct: 227 IDDVVAV-----NLWFFDHPGVSGIFNLG 250
>sp|Q07W60|HLDD_SHEFN ADP-L-glycero-D-manno-heptose-6-epimerase OS=Shewanella
frigidimarina (strain NCIMB 400) GN=hldD PE=3 SV=1
Length = 317
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 114/256 (44%), Gaps = 33/256 (12%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD----- 60
++V G G++G +L++ L+ + G+ D+ A T Q+ A + D D
Sbjct: 2 IVVTGAAGFIGSNLVKQLNAM-GRN-DIIAVDDLTDGTQMFNLADCEIADYLDKDDFIKQ 59
Query: 61 LKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE 120
+K+G FD + +V+ + A S E D M+ N S L +++
Sbjct: 60 IKAGD-FD------NKLEVIFHQGACS--STTEWDGKFMMANNFEYSKT--LLHYSQANN 108
Query: 121 NLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEK--CSNFAILRSSIIY 178
I+ S+ VY G + F ++ + P+NVY SK ++++ ++ A LR +Y
Sbjct: 109 CQFIYASSASVYGGSEKFIEQRELEKPLNVYAYSKFLFDQYVRQQKLTGQVAGLRYFNVY 168
Query: 179 GPQTISPVP-KSLPIQWIDSVLSKG-----EKVEFFHD--ECRCPVYVRDVVKIILALTN 230
GP+ S+ + + + + G E V+ + + + R V+V DVVK+ N
Sbjct: 169 GPREQHKGGMASVAFHFNNQINTNGVCRLFEGVDGYENGQQLRDFVFVEDVVKV-----N 223
Query: 231 RWLSEDKQMQLLLNVG 246
WL ++ + + N G
Sbjct: 224 LWLWQNPSVSGIYNCG 239
>sp|P37761|RMLB_NEIGO dTDP-glucose 4,6-dehydratase OS=Neisseria gonorrhoeae GN=rfbB PE=3
SV=1
Length = 346
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 19/176 (10%)
Query: 2 SKKRVLVVGGTGYLG----QHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFF 57
KK +LV GG G++G +H++Q + ++ ++ L L A + F
Sbjct: 5 GKKNILVTGGAGFIGSAVVRHIIQNTRD---SVVNLDKLTYAGNLESLTDIADNPRYAFE 61
Query: 58 DVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINV-------PSSLVN 110
VD+ + D V ++ +PD V++ AA S + N+ ++
Sbjct: 62 QVDICDRAELDRVFAQY-RPDAVMHLAAESHVDRAIGSAGEFIRTNIVGTFDLLEAARAY 120
Query: 111 WLSSFTENKENLLI-HLSTDQVY---EGVKSFYKEEDEIAPVNVYGKSKVAAEKFI 162
W +E +E H+STD+VY G + E AP + Y SK AA+ +
Sbjct: 121 WQQMPSEKREAFRFHHISTDEVYGDLHGTDDLFTETTPYAPSSPYSASKAAADHLV 176
>sp|P04397|GAL10_YEAST Bifunctional protein GAL10 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GAL10 PE=1 SV=2
Length = 699
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 99/254 (38%), Gaps = 41/254 (16%)
Query: 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVA-------ATHHSTPLPQLLLDALPHSF 54
+ K VLV GG GY+G H + L E YD +T+ S ++L H
Sbjct: 10 TSKIVLVTGGAGYIGSHTVVELIE---NGYDCVVADNLSNSTYDSVARLEVLTK---HHI 63
Query: 55 VFFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSS 114
F++VDL G + V ++ + D V++ A L P N+ ++V L
Sbjct: 64 PFYEVDLCDRKGLEKVFKEY-KIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVV-LLEL 121
Query: 115 FTENKENLLIHLSTDQVYEGVKSF-----YKEEDEIAPVNVYGKSKVAAEKFIYE----- 164
+ + + S+ VY F EE + P N YG +K A E + +
Sbjct: 122 MQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSD 181
Query: 165 -KCSNFAILRSSIIYGPQTISP----------VPKSLPIQWIDSVLSKGEKVEFFHD--E 211
K FAILR + P P +P +L + + EK+ F D +
Sbjct: 182 KKSWKFAILR---YFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYD 238
Query: 212 CRCPVYVRDVVKII 225
R +RD + ++
Sbjct: 239 SRDGTPIRDYIHVV 252
>sp|P53199|ERG26_YEAST Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=ERG26 PE=1 SV=1
Length = 349
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 1 MSK-KRVLVVGGTGYLGQHLLQGLSEIEGKP----YDVAATHHSTPLPQLLLDALPHS-- 53
MSK VL++GG+G+LG HL+Q +I KP +DV LP+ L +
Sbjct: 1 MSKIDSVLIIGGSGFLGLHLIQQFFDINPKPDIHIFDV------RDLPEKLSKQFTFNVD 54
Query: 54 -FVFFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWL 112
F DL S + A+ + +VVV+CA+ P +N PD +NV + N +
Sbjct: 55 DIKFHKGDLTSPDDMEN-AINESKANVVVHCAS---PMHGQN-PDIYDIVNVKGTR-NVI 108
Query: 113 SSFTENKENLLIHLSTDQVYEGVKSFYKEEDEI----APVNVYGKSKVAAEKFIY---EK 165
+ N+L++ S+ V + + ++ P++ Y ++K AE + +
Sbjct: 109 DMCKKCGVNILVYTSSAGVIFNGQDVHNADETWPIPEVPMDAYNETKAIAEDMVLKANDP 168
Query: 166 CSNF--AILRSSIIYGPQTISPVP 187
S+F LR + I+GP VP
Sbjct: 169 SSDFYTVALRPAGIFGPGDRQLVP 192
>sp|Q56623|GALE_VIBCL UDP-glucose 4-epimerase OS=Vibrio cholerae GN=galE PE=3 SV=1
Length = 328
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 44/197 (22%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDV-DLK 62
K +L+ G TG++G +L++ L+ ++ +A H+ LL F+V D+
Sbjct: 10 KSILLTGSTGFVGTNLVKSLT-LKSDYIVKSAVRHAVNKDDGLL---------FEVGDIN 59
Query: 63 SGSGFDAVALKFGQPDVVVNCAALS--------VPRVCENDPDSAMSINVPSSLVN---- 110
+ + F+ L VVV+CAA + P + ++A ++N+ ++
Sbjct: 60 ASTDFE---LPLKNTTVVVHCAARAHVMDDKEAEPLTLYREVNTAGTVNLAKQAIDSGVK 116
Query: 111 ---WLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEK----FIY 163
++SS N E L+ +K ED AP + YG SK AEK
Sbjct: 117 RFIFISSIKVNGEGTLVGCP-----------FKTEDNHAPEDDYGLSKSEAEKQLVALAK 165
Query: 164 EKCSNFAILRSSIIYGP 180
+ I+R +I+YGP
Sbjct: 166 DSSMEVVIIRPTIVYGP 182
>sp|P39858|CAPI_STAAU Protein CapI OS=Staphylococcus aureus GN=capI PE=3 SV=1
Length = 334
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 108/246 (43%), Gaps = 19/246 (7%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPY----DVAATHHSTPLPQLLLDAL-PHSFVFFDV 59
++L+ G G++G HL + L I+ Y D ++S L + L ++ +F F V
Sbjct: 2 KILITGTAGFIGSHLAKKL--IKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKV 59
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK 119
L++ V + QP+VVVN AA + R +P + + N+ + S N
Sbjct: 60 KLENYDDLSKVFVD-EQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI 118
Query: 120 ENLLIHLSTDQVY--EGVKSFYKEEDEIAPVNVYGKSKVAAE--KFIYEKCSNFAI--LR 173
+N LI+ S+ VY K F ++ P+++Y +K + E Y N LR
Sbjct: 119 QN-LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR 177
Query: 174 SSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH-DECRCPVYVRDVVKIILALTNRW 232
+YGP P ++ ++++ + H + R YV D+V+ I L +
Sbjct: 178 FFTVYGPWG---RPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKP 234
Query: 233 LSEDKQ 238
S +K+
Sbjct: 235 ASPNKE 240
>sp|Q31FG4|HLDD_THICR ADP-L-glycero-D-manno-heptose-6-epimerase OS=Thiomicrospira
crunogena (strain XCL-2) GN=hldD PE=3 SV=1
Length = 323
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 113/261 (43%), Gaps = 41/261 (15%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDV------ 59
++V GG G++G ++++ L+ +G+ D+ L++D L + F ++
Sbjct: 2 IVVTGGAGFIGSNIVKALN-AQGRT-DI-----------LVVDNLKNGKKFINIADCDIA 48
Query: 60 DLKSGSGFDA-VALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN 118
D F + + + G PD+ + E D M N S L ++ N
Sbjct: 49 DYLDKEDFQSRIFAEEGLPDIDCVFHEGACSATTEWDGKYMMDNNYEYS--KDLLNYCLN 106
Query: 119 KENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYE----KCSNFAILRS 174
++ ++ S+ VY +F +E P+NVYG SK ++++ S A R
Sbjct: 107 RKIPFLYASSAAVYGDGPTFIEERQYEKPLNVYGYSKFQFDQYVRRILPLAESQVAGFRY 166
Query: 175 SIIYGPQTISPVP-KSLPIQWIDSVLSKGEKVEFF--HD------ECRCPVYVRDVVKII 225
+YGP+ S+ + + VL+ GEK++ F +D + R V++ DVV +
Sbjct: 167 FNVYGPREQHKGDMASVAFKLHNQVLA-GEKLKLFGAYDGYEAGMQTRDFVFIEDVVNV- 224
Query: 226 LALTNRWLSEDKQMQLLLNVG 246
N W E+ + + N+G
Sbjct: 225 ----NLWFMENPEQSGIFNLG 241
>sp|A4SQW9|ARNA_AERS4 Bifunctional polymyxin resistance protein ArnA OS=Aeromonas
salmonicida (strain A449) GN=arnA PE=3 SV=1
Length = 663
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 113/286 (39%), Gaps = 53/286 (18%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64
RVL++G G++G HL + L ++ Y++ S +D FV D+ + +
Sbjct: 319 RVLILGVNGFIGNHLTERL--LKDGRYEIYGLDISASALGRFIDHPHFHFVEGDISIHT- 375
Query: 65 SGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLI 124
+ + + DV++ A++ P +P ++ +L NK +I
Sbjct: 376 ---EWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKR--II 430
Query: 125 HLSTDQVYEGVKSFYKEEDE----IAPVN----VYGKSKVAAEKFIY----EKCSNFAIL 172
ST +VY +EDE + P++ +Y SK ++ I+ ++ NF +
Sbjct: 431 FPSTSEVYGMCDDHSFDEDESRLIVGPIHKQRWIYSVSKQLLDRVIWAYGKKEGLNFTLF 490
Query: 173 RSSIIYGP-----------------QTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCP 215
R GP Q I + PIQ +D K RC
Sbjct: 491 RPFNWMGPRLDSLDSARIGSSRAITQLILNLVDGTPIQLVDGGAQK-----------RCF 539
Query: 216 VYVRDVVKIILALT-NRWLSEDKQMQLLLNVGGPD-RVSRVQMAEV 259
+ D ++ + + N+ D Q ++N+G PD S +QMAEV
Sbjct: 540 TDIEDGIEALFRIIENKGNRCDGQ---IINIGSPDNEASILQMAEV 582
>sp|Q04871|YCL2_ECO11 Uncharacterized 37.6 kDa protein in cld 5'region OS=Escherichia
coli O111:H- PE=3 SV=1
Length = 334
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 75/329 (22%), Positives = 131/329 (39%), Gaps = 49/329 (14%)
Query: 5 RVLVVGGTGYLGQH----LLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPH-SFVFFDV 59
+ LV G G++G H LL+ ++ G D ++ L Q L+ L F F +
Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVG--IDNLNDYYDVSLKQARLELLAQPGFQFHKI 59
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK 119
DL G + V ++ L+V EN P + N+ + +N L NK
Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLEN-PHAYADSNL-TGFLNILEGCRHNK 117
Query: 120 ENLLIHLSTDQVYE-GVKSFYKEEDEI-APVNVYGKSKVAAEKFIYEKCSNFAI----LR 173
L++ S+ VY K + +D + PV++Y +K A E + + + LR
Sbjct: 118 IQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLR 177
Query: 174 SSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKIILALTNR 231
+YGP P ++ ++L +G+ ++ ++ R Y+ D+ + I+ L +
Sbjct: 178 FFTVYGPWG---RPDMALFKFTKAML-EGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDV 233
Query: 232 WLSEDKQMQL-------------LLNVGGPDRVS---RVQMAEVDRGVQS--------PA 267
D Q + + N+G V +Q E G+++ P
Sbjct: 234 IPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPG 293
Query: 268 DI---SMDITKLVQTLNIDP-VTYKDGVK 292
D+ S D L + + P T KDGVK
Sbjct: 294 DVLETSADTKALYEVIGFTPETTVKDGVK 322
>sp|Q3KCC1|ARNA_PSEPF Bifunctional polymyxin resistance protein ArnA OS=Pseudomonas
fluorescens (strain Pf0-1) GN=arnA PE=3 SV=1
Length = 668
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 111/270 (41%), Gaps = 27/270 (10%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK 62
+ RVL++G G++G HL + L + + Y+V + L FV D+ +
Sbjct: 318 RTRVLILGVNGFIGNHLSERL--LRDERYEVYGLDIGSDAIDRLRSHPRFHFVEGDISIH 375
Query: 63 SGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL 122
S + + + DVV+ A++ P +P ++ +L L +
Sbjct: 376 S----EWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLK--LVRYCVKYNKR 429
Query: 123 LIHLSTDQVYEGVKSFYKEEDE----IAPVN----VYGKSKVAAEKFIY---EKCSNFAI 171
+I ST +VY + + +ED + P+N +Y SK ++ I+ K NF +
Sbjct: 430 VIFPSTSEVYGMCQDKHFDEDRSNLIVGPINKQRWIYSVSKQLLDRVIWAYGAKGLNFTL 489
Query: 172 LRSSIIYGPQ----TISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKII 225
R GP+ + + S I + L +G + F ++ RC + D V+ +
Sbjct: 490 FRPFNWMGPRLDRLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCFTDIADGVEAL 549
Query: 226 LALTNRWLSEDKQMQLLLNVGGPDRVSRVQ 255
+ + D ++N+G PD + ++
Sbjct: 550 ARIIDN--DNDVCNGQIINIGNPDNEASIR 577
>sp|Q5QKR8|PSEB_CAMJJ UDP-N-acetylglucosamine 4,6-dehydratase (inverting)
OS=Campylobacter jejuni subsp. jejuni serotype O:23/36
(strain 81-176) GN=pseB PE=3 SV=1
Length = 334
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 29/200 (14%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHS--FVFFDVDL 61
K +L+ GGTG G+ + L E KP + + L Q + ++ +S +F D+
Sbjct: 5 KNILITGGTGSFGKTYTKVLLE-NYKPNKII-IYSRDELKQFEMSSIFNSNCMRYFIGDV 62
Query: 62 KSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN 121
+ +VA++ D V++ AA+ V E +P + N+ + N + + EN
Sbjct: 63 RDKERL-SVAMR--DVDFVIHAAAMKHVPVAEYNPMECIKTNIHGAQ-NVIDACFENGVK 118
Query: 122 LLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIY-------EKCSNFAILRS 174
I LSTD+ PVN+YG +K+A++K K + F++ R
Sbjct: 119 KCIALSTDKA-------------CNPVNLYGATKLASDKLFVAANNIAGNKQTRFSVTRY 165
Query: 175 SIIYGPQ-TISPVPKSLPIQ 193
+ G + ++ P K L Q
Sbjct: 166 GNVVGSRGSVVPFFKKLIAQ 185
>sp|Q12CM2|HLDD_POLSJ ADP-L-glycero-D-manno-heptose-6-epimerase OS=Polaromonas sp.
(strain JS666 / ATCC BAA-500) GN=hldD PE=3 SV=1
Length = 335
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 128/310 (41%), Gaps = 50/310 (16%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDV-DLKS 63
+++V G G++G +L++GL++ G D+ A +D L H F ++ DL+
Sbjct: 2 KIVVTGAAGFIGSNLVKGLND-RGID-DIIA-----------VDDLTHGDKFRNLADLQI 48
Query: 64 GSGFDA-------VALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFT 116
DA FGQ + V + A S E D M N +L L
Sbjct: 49 ADYIDADDFYDLFAEGAFGQVEAVFHEGACS--DTMELDGKYMMDNNY--TLSCELFHAC 104
Query: 117 ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEK--------CSN 168
+ + L++ S+ Y G +F + + P+NVYG SK+ ++ + + +
Sbjct: 105 QEQGTRLLYASSAATYGGSDTFSESPEFERPLNVYGYSKLLFDQRMRRELGARFENAATQ 164
Query: 169 FAILRSSIIYGP-QTISPVPKSLPIQWIDSVLSKGEKVEFFHD--------ECRCPVYVR 219
A R +YGP + S+ + ++G KV+ F D + R V++
Sbjct: 165 VAGFRYFNVYGPREQHKGRMASVAFHQFNQFQAEG-KVKLFGDYGGYQAGGQMRDFVFID 223
Query: 220 DVVKIILALTNRWLSEDKQMQLLLNVGGPDR--VSRVQMAEVDRGVQSPADISMDITKLV 277
DVV + N W + + + N+G + V +A V+ QS +M + V
Sbjct: 224 DVVAV-----NLWFLDHPEKSGIFNLGTGRAQPFNDVALAVVNTLRQSQNAAAMSLEDAV 278
Query: 278 QTLNIDPVTY 287
+ ID +T+
Sbjct: 279 RGGLIDYITF 288
>sp|Q4KC82|ARNA_PSEF5 Bifunctional polymyxin resistance protein ArnA OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=arnA PE=3
SV=1
Length = 668
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 110/270 (40%), Gaps = 27/270 (10%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK 62
+ RVL++G G++G HL + L + YDV + + L FV D+ +
Sbjct: 318 RTRVLILGVNGFIGNHLSERL--LRDDKYDVYGLDIGSDAIERLRSHPNFHFVEGDISIH 375
Query: 63 SGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL 122
S + + + DVV+ A++ P +P ++ +L L +
Sbjct: 376 S----EWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLK--LVRYCVKYNKR 429
Query: 123 LIHLSTDQVYEGVKSFYKEEDE----IAPVN----VYGKSKVAAEKFIY---EKCSNFAI 171
+I ST +VY + +ED + P+N +Y SK ++ I+ K NF +
Sbjct: 430 VIFPSTSEVYGMCQDKNFDEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGAKGLNFTL 489
Query: 172 LRSSIIYGPQ----TISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKII 225
R GP+ + + S I + L +G + F ++ RC + D ++ +
Sbjct: 490 FRPFNWMGPRLDRLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCFTDIADGIEAL 549
Query: 226 LALTNRWLSEDKQMQLLLNVGGPDRVSRVQ 255
+ + D ++N+G PD + ++
Sbjct: 550 ARIVDN--ENDCCNGQIINIGNPDNEASIR 577
>sp|B7N5M0|ARNA_ECOLU Bifunctional polymyxin resistance protein ArnA OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=arnA PE=3 SV=1
Length = 660
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 111/275 (40%), Gaps = 36/275 (13%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK 62
+ RVL++G G++G HL + L + Y+V + L+ FV D+ +
Sbjct: 315 RTRVLILGVNGFIGNHLTERL--LREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIH 372
Query: 63 SGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL 122
S + + + DVV+ A++ P +P ++ +L + +
Sbjct: 373 S----EWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLR--IIRYCVKYRKR 426
Query: 123 LIHLSTDQVYEGVKSFYKEEDE----IAPVN----VYGKSKVAAEKFIY----EKCSNFA 170
+I ST +VY Y +ED + PVN +Y SK ++ I+ ++ F
Sbjct: 427 IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 486
Query: 171 ILRSSIIYGPQ----TISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRD---- 220
+ R GP+ + + S I + L +G ++ + RC +RD
Sbjct: 487 LFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEA 546
Query: 221 VVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ 255
+ +II NR E ++N+G PD + ++
Sbjct: 547 LYRIIENAGNRCDGE------IINIGNPDNEASIE 575
>sp|A0KGY6|ARNA_AERHH Bifunctional polymyxin resistance protein ArnA OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=arnA PE=3 SV=1
Length = 663
Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 58/285 (20%), Positives = 110/285 (38%), Gaps = 51/285 (17%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64
RVL++G G++G HL + L + G Y+V + + FV D+ + +
Sbjct: 319 RVLILGVNGFIGNHLTERLLQDGG--YEVYGLDIGSSAVDRFIGHPNFHFVEGDISIHT- 375
Query: 65 SGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLI 124
+ + + DV++ A++ P +P ++ +L + + +I
Sbjct: 376 ---EWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLK--IVRYCVKYHKRII 430
Query: 125 HLSTDQVYEGVKSFYKEEDE----IAPVN----VYGKSKVAAEKFIY----EKCSNFAIL 172
ST +VY +ED + P+N +Y SK ++ I+ ++ NF +
Sbjct: 431 FPSTSEVYGMCDDHSFDEDSSRLIVGPINKQRWIYSVSKQLLDRVIWAYGKKEGLNFTLF 490
Query: 173 RSSIIYGP-----------------QTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCP 215
R GP Q I + PIQ +D K RC
Sbjct: 491 RPFNWMGPRLDSLDSARIGSSRAITQLILNLVDGTPIQLVDGGAQK-----------RCF 539
Query: 216 VYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRV-QMAEV 259
+ D ++ + + E++ ++N+G PD + + QMAE+
Sbjct: 540 TDIEDGIEALFRIIEN--KENRCDGQIINIGNPDNEASIQQMAEI 582
>sp|Q0P8W4|PSEB_CAMJE UDP-N-acetylglucosamine 4,6-dehydratase (inverting)
OS=Campylobacter jejuni subsp. jejuni serotype O:2
(strain NCTC 11168) GN=pseB PE=1 SV=1
Length = 334
Score = 39.7 bits (91), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 88/210 (41%), Gaps = 37/210 (17%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHS--FVFFD 58
+KK +L+ GGTG G+ + L E KP + + L Q + ++ ++ +F
Sbjct: 2 FNKKNILITGGTGSFGKTYTKVLLE-NYKPNKI-IIYSRDELKQFEMASVFNAPCMRYFI 59
Query: 59 VDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN 118
D++ A A++ D V++ AA+ + E +P + N+ + N + + EN
Sbjct: 60 GDVRDKERLSA-AMR--DVDFVIHAAAMKHVPIAEYNPMECIKTNIHGAQ-NVIDACFEN 115
Query: 119 KENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIY-------EKCSNFAI 171
I LSTD+ PVN+YG +K+A++K K + F +
Sbjct: 116 GVKKCIALSTDKA-------------CNPVNLYGATKLASDKLFVAANNIAGNKQTRFGV 162
Query: 172 LRSSIIYGPQT---------ISPVPKSLPI 192
R + G + IS K LPI
Sbjct: 163 TRYGNVVGSRGSVVPFFKKLISEGAKELPI 192
>sp|C3KAD2|ARNA_PSEFS Bifunctional polymyxin resistance protein ArnA OS=Pseudomonas
fluorescens (strain SBW25) GN=arnA PE=3 SV=1
Length = 663
Score = 38.9 bits (89), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 55/270 (20%), Positives = 111/270 (41%), Gaps = 27/270 (10%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK 62
+ RVL++G G++G HL + L + Y+V + + L +V D+ +
Sbjct: 318 RTRVLILGVNGFIGNHLSERL--LRDDRYEVYGLDIGSDAIERLRSHPNFHYVEGDISIH 375
Query: 63 SGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL 122
+ + + + DVV+ A++ P +P ++ +L L +
Sbjct: 376 T----EWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLK--LVRYCVKYNKR 429
Query: 123 LIHLSTDQVYEGVKSFYKEEDE----IAPVN----VYGKSKVAAEKFIY---EKCSNFAI 171
+I ST +VY + Y +ED + PVN +Y SK ++ I+ K NF +
Sbjct: 430 VIFPSTSEVYGMCQDQYFDEDTSNLVVGPVNKQRWIYSVSKQLLDRVIWAYGAKGLNFTL 489
Query: 172 LRSSIIYGPQ----TISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKII 225
R GP+ + + S I + L +G + F ++ RC + D ++ +
Sbjct: 490 FRPFNWMGPRLDRLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCFTDIADGIEAL 549
Query: 226 LALTNRWLSEDKQMQLLLNVGGPDRVSRVQ 255
+ + D ++N+G P+ + ++
Sbjct: 550 ARIIDN--DNDACNGQIINIGNPENEASIR 577
>sp|Q9R1J0|NSDHL_MOUSE Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Mus
musculus GN=Nsdhl PE=2 SV=1
Length = 362
Score = 38.9 bits (89), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 24/192 (12%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
K+ V+GG+G+LGQH+++ L E G +V H P++ FF DL +
Sbjct: 27 KKCTVIGGSGFLGQHMVEQLLE-RGYTVNVFDIHQGFDNPRVQ---------FFIGDLCN 76
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
ALK V +CA+ P N+ + +N + + + L+
Sbjct: 77 QQDLYP-ALK--GVSTVFHCAS---PPPYSNNKELFYRVNFIGTKTVIETCREAGVQKLI 130
Query: 124 IHLSTDQVYEGVKSFYKEED---EIAPVNVYGKSKVAAEKFIYEKC---SNF--AILRSS 175
+ S V+EGV ED + P++ Y ++K+ E+ + + NF A +R
Sbjct: 131 LTSSASVVFEGVDIKNGTEDLPYAMKPIDYYTETKILQERAVLDANDPKKNFLTAAIRPH 190
Query: 176 IIYGPQTISPVP 187
I+GP+ VP
Sbjct: 191 GIFGPRDPQLVP 202
>sp|Q7N3Q7|ARNA_PHOLL Bifunctional polymyxin resistance protein ArnA OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=arnA PE=3
SV=1
Length = 660
Score = 38.9 bits (89), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 58/277 (20%), Positives = 117/277 (42%), Gaps = 31/277 (11%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK 62
+KRVL++G G++G HL + L + YD+ + + + F+ D+++
Sbjct: 315 RKRVLILGVNGFIGNHLTERL--LRDGNYDIYGMDIGSSAIERFISNPRFHFIEGDINIH 372
Query: 63 SGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL 122
+ + + + DVV+ A++ P +P ++ +L NK
Sbjct: 373 T----EWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKR-- 426
Query: 123 LIHLSTDQVYEGVKSFYKEEDE----IAPVN----VYGKSKVAAEKFIY----EKCSNFA 170
+I ST +VY +ED+ + P+N +Y SK ++ I+ ++ F
Sbjct: 427 IIFPSTSEVYGMCDDKEFDEDDSRLIVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLKFT 486
Query: 171 ILRSSIIYGPQ----TISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKI 224
+ R GP+ + + S I + L +G ++ ++ RC + D ++
Sbjct: 487 LFRPFNWMGPRLDNLNSARIGSSRAITQLILNLVEGSPIKLVDGGEQKRCFTDINDGIEA 546
Query: 225 ILALT-NRWLSEDKQMQLLLNVGGP-DRVSRVQMAEV 259
+ + NR D Q ++N+G P + S Q+AE+
Sbjct: 547 LFRIIENREGLCDGQ---IINIGNPTNEASIRQLAEI 580
>sp|A8GLC8|HLDD_SERP5 ADP-L-glycero-D-manno-heptose-6-epimerase OS=Serratia
proteamaculans (strain 568) GN=hldD PE=3 SV=1
Length = 309
Score = 38.9 bits (89), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 96/237 (40%), Gaps = 33/237 (13%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFD-VDLKSG 64
++V GG G +G ++++ L++ + D+ L++D L F + VDL
Sbjct: 2 IIVTGGAGMIGSNIIKALNDTGYR--DI-----------LVVDNLKDGTKFANLVDLDIA 48
Query: 65 SGFDA--------VALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFT 116
D G+ D + + A S E D M N S L +
Sbjct: 49 DYIDKEDFIANIIAGDDLGEIDAIFHEGACS--STTEWDGKYMMDNNYQYS--KDLLHYC 104
Query: 117 ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIY----EKCSNFAIL 172
++E ++ S+ Y G + F +E AP+NVYG SK ++++ E S
Sbjct: 105 LDREIPFLYASSAATYGGREEFIEERQFEAPLNVYGYSKFLFDQYVREILPEAESQICGF 164
Query: 173 RSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFF---HDECRCPVYVRDVVKIIL 226
R +YGP+ + ++ +++GE + F D R +YV DV + L
Sbjct: 165 RYFNVYGPREGHKGSMASVAFHLNGQINRGENPKLFDGSQDFKRDFIYVGDVAAVNL 221
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,145,375
Number of Sequences: 539616
Number of extensions: 4739766
Number of successful extensions: 12845
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 230
Number of HSP's that attempted gapping in prelim test: 12732
Number of HSP's gapped (non-prelim): 309
length of query: 300
length of database: 191,569,459
effective HSP length: 117
effective length of query: 183
effective length of database: 128,434,387
effective search space: 23503492821
effective search space used: 23503492821
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)