Query 022283
Match_columns 299
No_of_seqs 380 out of 2426
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 16:54:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022283.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022283hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vk6_A NADH pyrophosphatase; 1 100.0 9.4E-39 3.2E-43 294.4 18.7 194 70-268 73-267 (269)
2 3cng_A Nudix hydrolase; struct 100.0 1.1E-34 3.8E-39 252.1 20.8 184 103-286 2-185 (189)
3 2qjt_B Nicotinamide-nucleotide 99.9 1.3E-25 4.6E-30 211.4 5.2 187 70-265 139-348 (352)
4 3i7u_A AP4A hydrolase; nudix p 99.9 1.2E-22 4E-27 167.3 9.2 121 141-266 4-130 (134)
5 2yyh_A MUTT domain, 8-OXO-DGTP 99.9 3.8E-21 1.3E-25 157.3 16.4 126 133-263 2-136 (139)
6 3q1p_A Phosphohydrolase (MUTT/ 99.9 3.5E-21 1.2E-25 169.3 17.0 141 127-274 57-204 (205)
7 3o8s_A Nudix hydrolase, ADP-ri 99.9 5.9E-21 2E-25 168.0 16.6 138 132-274 61-205 (206)
8 2qjo_A Bifunctional NMN adenyl 99.9 1.5E-22 5.1E-27 189.3 5.0 166 89-263 160-339 (341)
9 3shd_A Phosphatase NUDJ; nudix 99.8 1.4E-20 4.9E-25 156.0 13.9 124 139-263 3-132 (153)
10 4dyw_A MUTT/nudix family prote 99.8 4E-20 1.4E-24 155.2 15.1 128 132-261 20-153 (157)
11 3gwy_A Putative CTP pyrophosph 99.8 3.3E-20 1.1E-24 152.1 13.9 123 139-263 4-131 (140)
12 3gg6_A Nudix motif 18, nucleos 99.8 2.9E-20 9.8E-25 154.9 13.4 121 142-264 21-146 (156)
13 3grn_A MUTT related protein; s 99.8 5.2E-20 1.8E-24 153.1 14.0 126 141-266 8-138 (153)
14 3id9_A MUTT/nudix family prote 99.8 3.9E-20 1.3E-24 156.6 12.2 134 126-262 8-149 (171)
15 3f6a_A Hydrolase, nudix family 99.8 2.8E-19 9.5E-24 149.7 16.7 118 141-261 6-147 (159)
16 2pbt_A AP4A hydrolase; nudix p 99.8 1.7E-20 5.7E-25 151.7 8.6 120 142-266 5-130 (134)
17 2b0v_A Nudix hydrolase; struct 99.8 4.1E-20 1.4E-24 152.9 10.7 124 139-262 6-137 (153)
18 3q93_A 7,8-dihydro-8-oxoguanin 99.8 1.8E-19 6.1E-24 154.5 13.6 124 138-263 22-149 (176)
19 2rrk_A ORF135, CTP pyrophospho 99.8 1.9E-19 6.6E-24 146.4 12.5 128 141-270 9-139 (140)
20 2fb1_A Conserved hypothetical 99.8 2E-19 6.8E-24 160.9 13.0 129 135-266 7-144 (226)
21 3f13_A Putative nudix hydrolas 99.8 6.4E-19 2.2E-23 149.9 14.7 116 141-265 16-131 (163)
22 1vcd_A NDX1; nudix protein, di 99.8 1.5E-19 5.1E-24 144.8 10.1 114 145-263 7-122 (126)
23 3exq_A Nudix family hydrolase; 99.8 1.1E-19 3.8E-24 153.0 8.9 123 139-263 8-136 (161)
24 3oga_A Nucleoside triphosphata 99.8 7.1E-19 2.4E-23 147.9 13.5 106 141-246 28-148 (165)
25 3eds_A MUTT/nudix family prote 99.8 2.9E-19 1E-23 149.1 10.7 109 142-254 22-142 (153)
26 3i9x_A MUTT/nudix family prote 99.8 1.6E-19 5.6E-24 155.7 9.3 132 135-267 20-174 (187)
27 2b06_A MUTT/nudix family prote 99.8 8.2E-20 2.8E-24 151.8 7.0 123 138-263 5-134 (155)
28 1rya_A GDP-mannose mannosyl hy 99.8 9.1E-20 3.1E-24 151.8 7.1 117 139-255 16-146 (160)
29 3u53_A BIS(5'-nucleosyl)-tetra 99.8 3.8E-20 1.3E-24 154.8 4.6 128 129-261 3-138 (155)
30 3ees_A Probable pyrophosphohyd 99.8 1.2E-18 4E-23 143.6 13.3 121 140-263 21-145 (153)
31 3rh7_A Hypothetical oxidoreduc 99.8 1.6E-19 5.5E-24 169.9 9.0 126 140-279 182-308 (321)
32 3gz5_A MUTT/nudix family prote 99.8 2.2E-19 7.4E-24 162.1 9.4 138 128-266 9-157 (240)
33 2fml_A MUTT/nudix family prote 99.8 7.4E-19 2.5E-23 161.5 11.3 139 128-267 26-199 (273)
34 3fk9_A Mutator MUTT protein; s 99.8 4.3E-19 1.5E-23 153.9 9.0 119 141-263 4-129 (188)
35 2o1c_A DATP pyrophosphohydrola 99.8 5E-19 1.7E-23 145.1 8.8 124 136-262 5-146 (150)
36 3r03_A Nudix hydrolase; struct 99.8 9.9E-19 3.4E-23 143.1 10.5 119 144-264 12-135 (144)
37 1ktg_A Diadenosine tetraphosph 99.8 1.6E-18 5.6E-23 140.8 11.1 111 151-264 17-134 (138)
38 3son_A Hypothetical nudix hydr 99.8 1.1E-18 3.9E-23 144.1 9.9 115 150-268 18-144 (149)
39 1sjy_A MUTT/nudix family prote 99.8 6.3E-18 2.1E-22 140.5 13.6 106 140-245 12-128 (159)
40 1mut_A MUTT, nucleoside tripho 99.8 7.9E-19 2.7E-23 140.6 7.4 116 143-261 7-126 (129)
41 3hhj_A Mutator MUTT protein; n 99.8 5.8E-18 2E-22 141.3 12.8 119 143-263 32-155 (158)
42 2azw_A MUTT/nudix family prote 99.8 1.5E-18 5E-23 142.5 8.1 113 145-262 23-144 (148)
43 1k2e_A Nudix homolog; nudix/MU 99.7 4.9E-18 1.7E-22 142.0 10.7 115 142-266 2-137 (156)
44 2w4e_A MUTT/nudix family prote 99.7 2.4E-18 8.1E-23 142.4 8.7 107 139-245 4-115 (145)
45 2fkb_A Putative nudix hydrolas 99.7 5.1E-18 1.8E-22 144.6 10.5 122 143-266 39-169 (180)
46 2pqv_A MUTT/nudix family prote 99.7 3.4E-18 1.2E-22 142.0 9.0 105 141-250 19-132 (154)
47 3h95_A Nucleoside diphosphate- 99.7 1E-17 3.5E-22 146.1 12.2 131 137-268 22-161 (199)
48 3fcm_A Hydrolase, nudix family 99.7 2.6E-17 8.8E-22 143.2 10.8 123 142-268 46-187 (197)
49 1f3y_A Diadenosine 5',5'''-P1, 99.7 9.7E-18 3.3E-22 139.7 7.3 117 145-265 19-161 (165)
50 2yvp_A NDX2, MUTT/nudix family 99.7 8.6E-18 2.9E-22 143.8 6.9 108 138-245 39-152 (182)
51 1vhz_A ADP compounds hydrolase 99.7 1.4E-16 4.7E-21 139.4 13.9 107 139-246 48-159 (198)
52 1v8y_A ADP-ribose pyrophosphat 99.7 5E-17 1.7E-21 137.8 10.6 103 142-245 35-142 (170)
53 3e57_A Uncharacterized protein 99.7 1.2E-17 4.1E-22 148.4 6.4 124 142-266 69-207 (211)
54 2a6t_A SPAC19A8.12; alpha/beta 99.7 8.2E-17 2.8E-21 147.9 11.1 128 137-266 97-242 (271)
55 1q27_A Putative nudix hydrolas 99.7 1.8E-17 6.1E-22 140.1 5.9 104 141-245 34-146 (171)
56 1hzt_A Isopentenyl diphosphate 99.7 2.4E-17 8.1E-22 142.3 6.7 121 146-267 38-175 (190)
57 2kdv_A RNA pyrophosphohydrolas 99.7 6.3E-16 2.2E-20 130.9 14.8 103 141-246 8-134 (164)
58 1mk1_A ADPR pyrophosphatase; n 99.7 8.3E-17 2.8E-21 141.4 9.1 108 138-245 41-156 (207)
59 1nqz_A COA pyrophosphatase (MU 99.7 7.1E-17 2.4E-21 139.6 7.5 104 142-245 36-149 (194)
60 2jvb_A Protein PSU1, mRNA-deca 99.7 7.7E-17 2.6E-21 132.4 7.3 102 142-246 5-113 (146)
61 3o6z_A GDP-mannose pyrophospha 99.7 1.7E-16 5.9E-21 137.8 9.5 110 135-245 40-164 (191)
62 2fvv_A Diphosphoinositol polyp 99.7 5.6E-17 1.9E-21 141.7 5.6 93 151-245 53-148 (194)
63 1g0s_A Hypothetical 23.7 kDa p 99.7 2.7E-16 9.3E-21 138.6 9.5 113 133-245 50-177 (209)
64 1x51_A A/G-specific adenine DN 99.6 2.6E-16 8.8E-21 131.0 8.3 109 151-262 33-147 (155)
65 2dsc_A ADP-sugar pyrophosphata 99.6 5.8E-16 2E-20 136.5 10.9 105 141-245 63-181 (212)
66 3fjy_A Probable MUTT1 protein; 99.6 4.7E-16 1.6E-20 147.7 9.4 116 151-270 37-180 (364)
67 3q91_A Uridine diphosphate glu 99.6 8.7E-16 3E-20 136.9 10.4 109 137-245 33-186 (218)
68 1u20_A U8 snoRNA-binding prote 99.6 4.8E-16 1.7E-20 137.4 6.2 111 132-246 36-164 (212)
69 3fsp_A A/G-specific adenine gl 99.6 2.4E-15 8.2E-20 143.7 11.4 113 144-263 243-360 (369)
70 2xsq_A U8 snoRNA-decapping enz 99.6 5.3E-15 1.8E-19 131.7 8.2 109 132-245 45-171 (217)
71 1q33_A Pyrophosphatase, ADP-ri 99.6 3.4E-14 1.2E-18 131.8 14.0 107 153-265 140-277 (292)
72 2dho_A Isopentenyl-diphosphate 99.4 2.2E-13 7.5E-18 122.6 8.4 126 142-268 60-219 (235)
73 2pny_A Isopentenyl-diphosphate 99.4 1.6E-13 5.6E-18 124.3 7.6 126 142-268 71-230 (246)
74 3dup_A MUTT/nudix family prote 99.2 1.9E-11 6.6E-16 113.7 8.7 111 153-264 134-263 (300)
75 3qsj_A Nudix hydrolase; struct 99.2 6.6E-11 2.3E-15 106.3 10.7 92 153-244 25-185 (232)
76 3kvh_A Protein syndesmos; NUDT 99.0 6.1E-11 2.1E-15 103.3 3.3 90 153-246 45-148 (214)
77 3bho_A Cleavage and polyadenyl 98.9 2.6E-09 8.9E-14 93.8 7.3 63 141-207 59-130 (208)
78 3j20_Y 30S ribosomal protein S 97.6 2.3E-05 7.9E-10 53.6 2.0 33 102-138 17-49 (50)
79 3h0g_I DNA-directed RNA polyme 96.3 0.0036 1.2E-07 49.7 4.7 38 102-139 2-39 (113)
80 2k4x_A 30S ribosomal protein S 96.1 0.0032 1.1E-07 43.7 2.9 35 102-140 16-50 (55)
81 3qt1_I DNA-directed RNA polyme 94.3 0.022 7.7E-07 46.5 2.8 36 102-137 22-57 (133)
82 4esj_A Type-2 restriction enzy 93.1 0.037 1.3E-06 49.3 2.2 45 93-137 22-67 (257)
83 1twf_I B12.6, DNA-directed RNA 92.2 0.073 2.5E-06 42.6 2.6 38 102-139 2-39 (122)
84 1pft_A TFIIB, PFTFIIBN; N-term 89.2 0.21 7.1E-06 33.3 2.3 31 104-138 5-36 (50)
85 2hf1_A Tetraacyldisaccharide-1 88.7 0.22 7.4E-06 35.9 2.3 32 102-138 6-37 (68)
86 2jr6_A UPF0434 protein NMA0874 88.5 0.23 7.8E-06 35.7 2.3 34 100-138 4-37 (68)
87 2js4_A UPF0434 protein BB2007; 88.3 0.21 7.3E-06 36.1 2.0 34 100-138 4-37 (70)
88 2pk7_A Uncharacterized protein 86.4 0.52 1.8E-05 33.9 3.1 34 100-138 4-37 (69)
89 1vq8_Z 50S ribosomal protein L 85.7 0.24 8.2E-06 37.0 1.1 33 100-136 23-55 (83)
90 1dl6_A Transcription factor II 85.2 0.55 1.9E-05 32.5 2.7 33 101-137 8-41 (58)
91 1twf_L ABC10-alpha, DNA-direct 83.8 0.34 1.2E-05 35.0 1.1 29 105-138 29-58 (70)
92 2akl_A PHNA-like protein PA012 83.3 0.55 1.9E-05 37.9 2.2 32 102-138 25-56 (138)
93 2jny_A Uncharacterized BCR; st 82.0 1 3.4E-05 32.3 3.0 35 99-138 5-39 (67)
94 2ct7_A Ring finger protein 31; 80.5 0.67 2.3E-05 34.4 1.7 31 102-136 23-53 (86)
95 1gh9_A 8.3 kDa protein (gene M 80.1 0.65 2.2E-05 33.6 1.5 25 107-137 7-31 (71)
96 3v2d_5 50S ribosomal protein L 80.0 0.54 1.9E-05 32.9 1.0 22 103-133 29-50 (60)
97 2zjr_Z 50S ribosomal protein L 79.7 0.62 2.1E-05 32.6 1.2 23 103-134 29-51 (60)
98 2k5c_A Uncharacterized protein 78.7 0.6 2E-05 34.7 0.9 39 102-140 6-65 (95)
99 3m7n_A Putative uncharacterize 77.4 1.2 4.1E-05 37.6 2.6 31 103-139 139-169 (179)
100 4ayb_P DNA-directed RNA polyme 76.7 1.4 4.9E-05 29.2 2.2 31 106-138 5-35 (48)
101 2fiy_A Protein FDHE homolog; F 76.3 1.1 3.6E-05 41.5 2.0 34 103-136 181-218 (309)
102 3h0g_L DNA-directed RNA polyme 75.9 1.2 4.1E-05 31.5 1.8 30 103-137 20-49 (63)
103 2jrp_A Putative cytoplasmic pr 74.9 0.82 2.8E-05 34.0 0.7 6 128-133 33-38 (81)
104 2zkr_2 60S ribosomal protein L 74.4 1 3.6E-05 34.4 1.2 29 102-137 14-42 (97)
105 1k81_A EIF-2-beta, probable tr 73.2 1.7 6E-05 27.1 1.9 30 106-137 2-32 (36)
106 3cc2_Z 50S ribosomal protein L 71.8 1 3.6E-05 35.6 0.7 38 95-136 51-88 (116)
107 3u6p_A Formamidopyrimidine-DNA 71.0 1.6 5.4E-05 39.4 1.8 27 105-133 246-272 (273)
108 2con_A RUH-035 protein, NIN on 70.4 1.5 5E-05 32.4 1.2 15 103-117 29-43 (79)
109 1ee8_A MUTM (FPG) protein; bet 70.4 1.8 6.3E-05 38.9 2.1 28 105-134 236-263 (266)
110 2xzm_9 RPS31E; ribosome, trans 70.3 1.2 4.1E-05 38.2 0.8 31 103-137 112-142 (189)
111 1k82_A Formamidopyrimidine-DNA 69.9 1.7 6E-05 39.0 1.8 27 105-133 241-267 (268)
112 3u5c_f 40S ribosomal protein S 69.8 1.9 6.6E-05 35.5 1.9 33 102-138 116-150 (152)
113 2xzf_A Formamidopyrimidine-DNA 69.6 1.8 6.1E-05 39.0 1.8 28 105-134 243-270 (271)
114 1k3x_A Endonuclease VIII; hydr 69.1 1.8 6.3E-05 38.7 1.8 27 105-133 235-261 (262)
115 3u50_C Telomerase-associated p 69.0 4.6 0.00016 34.0 4.2 48 103-157 41-91 (172)
116 3jyw_9 60S ribosomal protein L 67.1 3.1 0.00011 30.1 2.3 32 101-136 23-54 (72)
117 3iz5_m 60S ribosomal protein L 66.9 2.8 9.7E-05 31.8 2.2 31 102-136 34-64 (92)
118 3w0f_A Endonuclease 8-like 3; 65.3 3 0.0001 38.0 2.4 32 105-136 252-283 (287)
119 3j21_i 50S ribosomal protein L 65.1 3 0.0001 31.1 1.9 33 100-136 31-63 (83)
120 3izc_m 60S ribosomal protein R 64.5 3.3 0.00011 31.4 2.1 33 100-136 32-64 (92)
121 2d74_B Translation initiation 63.6 3.3 0.00011 34.1 2.1 44 93-137 93-136 (148)
122 2e9h_A EIF-5, eukaryotic trans 61.4 5.6 0.00019 33.1 3.1 45 94-138 93-138 (157)
123 3cw2_K Translation initiation 61.3 3.5 0.00012 33.6 1.9 40 96-136 95-134 (139)
124 3j21_e 50S ribosomal protein L 60.9 3.6 0.00012 28.9 1.6 25 103-134 16-40 (62)
125 3j21_g 50S ribosomal protein L 60.9 2.1 7.1E-05 29.0 0.4 27 103-137 13-39 (51)
126 2apo_B Ribosome biogenesis pro 60.8 2.2 7.6E-05 29.8 0.5 25 103-137 5-29 (60)
127 2kpi_A Uncharacterized protein 60.0 4.5 0.00015 27.7 2.0 33 99-138 5-39 (56)
128 1ffk_W Ribosomal protein L37AE 58.5 4.8 0.00017 29.2 2.0 37 96-136 19-55 (73)
129 3ga8_A HTH-type transcriptiona 58.5 3.6 0.00012 29.7 1.3 11 149-159 23-33 (78)
130 4a17_Y RPL37A, 60S ribosomal p 57.2 3.4 0.00011 32.0 1.0 31 101-135 33-63 (103)
131 3k1f_M Transcription initiatio 57.2 4.7 0.00016 34.3 2.0 33 102-136 19-52 (197)
132 3k7a_M Transcription initiatio 56.7 5.2 0.00018 37.0 2.4 32 104-137 21-53 (345)
133 2aus_D NOP10, ribosome biogene 55.9 3.2 0.00011 29.0 0.7 25 103-137 4-28 (60)
134 3vdp_A Recombination protein R 55.3 0.46 1.6E-05 41.6 -4.7 93 86-192 50-144 (212)
135 3o9x_A Uncharacterized HTH-typ 54.8 3.7 0.00013 32.1 0.9 10 104-113 2-11 (133)
136 2lcq_A Putative toxin VAPC6; P 53.7 5 0.00017 33.0 1.6 25 106-136 134-158 (165)
137 1vq8_1 50S ribosomal protein L 52.1 2.6 9E-05 29.1 -0.3 26 102-134 15-40 (57)
138 4bbr_M Transcription initiatio 51.8 6.6 0.00023 36.5 2.3 31 104-136 21-52 (345)
139 2a20_A Regulating synaptic mem 51.2 1.2 4.2E-05 31.0 -2.1 10 105-114 34-43 (62)
140 2k5r_A Uncharacterized protein 51.1 7.7 0.00026 29.6 2.2 18 100-117 4-21 (97)
141 2kdx_A HYPA, hydrogenase/ureas 50.1 4.6 0.00016 31.6 0.8 26 104-135 73-99 (119)
142 2g2k_A EIF-5, eukaryotic trans 49.5 4.7 0.00016 34.0 0.8 44 94-137 86-130 (170)
143 1nee_A EIF-2-beta, probable tr 49.4 3.7 0.00013 33.4 0.1 41 94-136 92-133 (138)
144 2jrp_A Putative cytoplasmic pr 48.7 12 0.00041 27.6 2.8 26 105-136 3-28 (81)
145 1l1o_C Replication protein A 7 47.0 25 0.00085 29.3 5.0 33 104-142 43-77 (181)
146 1nui_A DNA primase/helicase; z 47.0 7.4 0.00025 34.1 1.7 31 102-135 12-42 (255)
147 2jne_A Hypothetical protein YF 46.7 8.9 0.0003 29.4 1.8 25 105-135 33-57 (101)
148 2jmo_A Parkin; IBR, E3 ligase, 45.3 13 0.00046 26.8 2.6 30 103-136 24-60 (80)
149 3irb_A Uncharacterized protein 44.8 6.4 0.00022 32.0 0.9 26 103-136 46-71 (145)
150 2l7x_A Envelope glycoprotein; 44.8 11 0.00036 27.1 1.9 35 94-134 20-54 (77)
151 1vdd_A Recombination protein R 44.4 0.63 2.2E-05 41.1 -5.6 77 87-177 37-113 (228)
152 1yfu_A 3-hydroxyanthranilate-3 44.1 4.7 0.00016 34.1 -0.1 35 106-140 124-173 (174)
153 1vfy_A Phosphatidylinositol-3- 43.6 13 0.00045 26.3 2.3 32 99-137 7-38 (73)
154 3a43_A HYPD, hydrogenase nicke 43.2 7.1 0.00024 31.5 0.9 34 104-137 70-118 (139)
155 1dvp_A HRS, hepatocyte growth 43.2 11 0.00037 32.5 2.2 32 99-137 157-188 (220)
156 2gnr_A Conserved hypothetical 40.6 8.2 0.00028 31.4 0.9 26 102-135 45-70 (145)
157 2kwq_A Protein MCM10 homolog; 40.3 6.8 0.00023 29.7 0.3 31 104-139 48-78 (92)
158 1qyp_A RNA polymerase II; tran 39.4 20 0.0007 24.0 2.7 33 104-136 15-53 (57)
159 1gnf_A Transcription factor GA 39.4 8.9 0.0003 25.2 0.8 32 103-135 3-34 (46)
160 3pwf_A Rubrerythrin; non heme 38.6 11 0.00036 31.5 1.3 21 107-134 141-161 (170)
161 3r8s_0 50S ribosomal protein L 36.7 11 0.00039 25.7 1.0 20 104-133 27-46 (56)
162 1zvf_A 3-hydroxyanthranilate 3 36.4 7.3 0.00025 32.9 -0.1 34 106-139 126-174 (176)
163 4a18_A RPL37, ribosomal protei 36.4 6.6 0.00023 29.7 -0.3 28 101-135 13-40 (94)
164 2gmg_A Hypothetical protein PF 36.3 24 0.00082 27.3 2.9 37 103-144 66-102 (105)
165 2f4m_A Peptide N-glycanase; gl 36.1 25 0.00087 32.0 3.5 25 92-116 62-93 (295)
166 3iz5_l 60S ribosomal protein L 35.0 7.6 0.00026 29.3 -0.1 27 101-134 13-39 (94)
167 3na7_A HP0958; flagellar bioge 34.8 11 0.00036 33.4 0.7 39 103-141 197-237 (256)
168 1wii_A Hypothetical UPF0222 pr 34.5 20 0.00068 26.6 2.1 33 104-136 23-57 (85)
169 1wd2_A Ariadne-1 protein homol 33.8 18 0.0006 24.9 1.6 29 102-134 4-34 (60)
170 2fiy_A Protein FDHE homolog; F 32.9 21 0.00071 32.7 2.4 25 103-135 207-231 (309)
171 2yw8_A RUN and FYVE domain-con 31.9 31 0.001 24.9 2.8 34 98-137 11-46 (82)
172 4gop_C Putative uncharacterize 31.8 41 0.0014 31.8 4.4 44 103-151 307-353 (444)
173 1x4u_A Zinc finger, FYVE domai 31.8 29 0.00099 25.2 2.6 33 99-137 7-41 (84)
174 1x3z_A Peptide: N-glycanase; h 31.5 31 0.0011 32.0 3.3 22 93-114 101-129 (335)
175 2k3r_A Ribonuclease P protein 31.5 27 0.00094 27.5 2.6 34 103-136 59-99 (123)
176 2owo_A DNA ligase; protein-DNA 31.3 15 0.0005 37.4 1.2 27 103-133 404-433 (671)
177 1joc_A EEA1, early endosomal a 30.9 31 0.0011 27.1 2.8 33 99-137 62-96 (125)
178 3dfx_A Trans-acting T-cell-spe 30.7 11 0.00038 26.5 0.1 33 103-136 6-38 (63)
179 1yuz_A Nigerythrin; rubrythrin 30.6 14 0.0005 31.5 0.9 23 106-135 173-195 (202)
180 3zyq_A Hepatocyte growth facto 30.4 24 0.00083 30.5 2.3 33 99-138 160-192 (226)
181 1x0t_A Ribonuclease P protein 30.2 30 0.001 27.1 2.6 33 103-136 64-104 (120)
182 3sgi_A DNA ligase; HET: DNA AM 29.9 11 0.00038 37.9 0.0 25 104-131 415-439 (615)
183 2vut_I AREA, nitrogen regulato 29.5 10 0.00034 24.6 -0.3 31 105-136 2-32 (43)
184 2x5c_A Hypothetical protein OR 29.4 1.2E+02 0.0041 22.9 5.7 19 151-172 72-90 (131)
185 4glx_A DNA ligase; inhibitor, 29.3 18 0.00062 36.1 1.5 24 104-131 405-428 (586)
186 1l8d_A DNA double-strand break 27.9 14 0.00047 28.1 0.3 13 104-116 47-59 (112)
187 1lv3_A Hypothetical protein YA 27.4 20 0.00069 25.5 1.0 29 103-134 8-37 (68)
188 1y02_A CARP2, FYVE-ring finger 27.3 39 0.0013 26.5 2.8 27 105-137 20-46 (120)
189 1lko_A Rubrerythrin all-iron(I 26.9 18 0.00062 30.5 0.8 24 106-135 157-180 (191)
190 1qxf_A GR2, 30S ribosomal prot 26.7 28 0.00096 24.6 1.6 7 107-113 10-16 (66)
191 1z2q_A LM5-1; membrane protein 26.0 43 0.0015 24.2 2.7 33 99-137 14-48 (84)
192 2ea6_A Ring finger protein 4; 25.7 29 0.001 23.1 1.6 21 95-115 47-67 (69)
193 3j20_W 30S ribosomal protein S 24.9 32 0.0011 24.1 1.6 20 125-144 14-35 (63)
194 3twl_A Formamidopyrimidine-DNA 24.7 20 0.00067 32.8 0.7 32 103-136 246-279 (310)
195 1iym_A EL5; ring-H2 finger, ub 24.2 39 0.0013 21.5 2.0 18 97-114 36-53 (55)
196 2qkd_A Zinc finger protein ZPR 24.2 33 0.0011 32.6 2.2 34 104-137 220-260 (404)
197 3bvo_A CO-chaperone protein HS 24.1 37 0.0013 29.1 2.3 30 103-137 9-38 (207)
198 1wfk_A Zinc finger, FYVE domai 24.0 43 0.0015 24.6 2.4 29 104-138 9-37 (88)
199 3t7l_A Zinc finger FYVE domain 23.9 52 0.0018 24.2 2.8 32 100-137 14-47 (90)
200 4gat_A Nitrogen regulatory pro 23.7 12 0.00043 26.4 -0.7 33 103-136 8-40 (66)
201 1tfi_A Transcriptional elongat 23.5 66 0.0023 21.1 3.0 33 104-136 9-47 (50)
202 3p2a_A Thioredoxin 2, putative 23.2 33 0.0011 26.4 1.7 31 106-138 7-37 (148)
203 2pzi_A Probable serine/threoni 22.9 26 0.0009 34.8 1.3 34 103-136 33-66 (681)
204 1dgs_A DNA ligase; AMP complex 22.7 27 0.00091 35.4 1.3 24 104-133 403-428 (667)
205 1wig_A KIAA1808 protein; LIM d 22.6 31 0.0011 23.9 1.3 37 99-137 26-64 (73)
206 3bbo_3 Ribosomal protein L33; 21.9 34 0.0012 24.1 1.3 14 104-117 49-62 (66)
207 1ltl_A DNA replication initiat 21.3 31 0.0011 30.7 1.3 32 105-136 135-166 (279)
208 3lqh_A Histone-lysine N-methyl 21.2 47 0.0016 28.0 2.3 26 105-133 3-28 (183)
209 3po3_S Transcription elongatio 21.0 59 0.002 27.1 2.9 32 105-136 138-175 (178)
No 1
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=100.00 E-value=9.4e-39 Score=294.36 Aligned_cols=194 Identities=19% Similarity=0.267 Sum_probs=170.8
Q ss_pred cccceeccccccCCCCCCcchHHHHHHHHhhhhcCCCCcCCCCCCcccccCCCCcceeecCCCCceeecCCcEEEEEEEe
Q 022283 70 RASRVCATRSESNQDATSSHPSSAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIE 149 (299)
Q Consensus 70 ~~~~~~~~r~~~~~~~~~~~~~~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~vV~~iv~ 149 (299)
.++++.++|+++..+..++.++++|.+|.+|+++++|||.||+++... ++++++.|++||..+||++.++|++++.
T Consensus 73 ~~~~~~~lr~~~~~~~~~~~~~~~a~~l~~w~~~~~fC~~CG~~~~~~----~~~~~~~C~~C~~~~yp~~~~~viv~v~ 148 (269)
T 1vk6_A 73 RRHDMGSVRQVIDLDVGLFQLAGRGVQLAEFYRSHKYCGYCGHEMYPS----KTEWAMLCSHCRERYYPQIAPCIIVAIR 148 (269)
T ss_dssp CSSCEECTTHHHHHCHHHHHHHHHHHHHHHHHHTTSBCTTTCCBEEEC----SSSSCEEESSSSCEECCCCEEEEEEEEE
T ss_pred CCccchhHHHHhcCCHHHhHHHHHHHHHHhhhhcCCccccCCCcCccC----CCceeeeCCCCCCEecCCCCcEEEEEEE
Confidence 466788899765447677889999999999999999999999999775 6889999999999999999999999999
Q ss_pred eCCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeecCCCCEEEEEEEEEecCCCCCC
Q 022283 150 HDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRPHFSP 229 (299)
Q Consensus 150 ~~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~p~~~~~~~~f~a~~~~~~~~~ 229 (299)
++++|||+||+..+ .|.|++|||+||+|||+++||+||++||||+++..+.+++++++++++.++++|.+++.++++.+
T Consensus 149 ~~~~vLL~rr~~~~-~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~~~~~~~~~~~~~~~~f~a~~~~~~~~~ 227 (269)
T 1vk6_A 149 RDDSILLAQHTRHR-NGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGDIVI 227 (269)
T ss_dssp ETTEEEEEEETTTC-SSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEEEEEEECCCCC
T ss_pred eCCEEEEEEecCCC-CCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEEEEEEecCCCCEEEEEEEEEECCCCcCC
Confidence 99999999998776 79999999999999999999999999999999999999999999999999999999988777666
Q ss_pred C-CcceeeEEecCCCCCCCCCCCccHHHHHHHHHHHHHcC
Q 022283 230 G-PESSECRLFALDEIPFDSLAFSSISVTLQLFIDDIRMG 268 (299)
Q Consensus 230 ~-~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~~~~~g 268 (299)
+ +|..+++||++++++......+..+.+++.|++..+++
T Consensus 228 ~~~E~~~~~W~~~~el~~l~~~~si~~~li~~~l~~~r~~ 267 (269)
T 1vk6_A 228 DPKELLEANWYRYDDLPLLPPPGTVARRLIEDTVAMCRAE 267 (269)
T ss_dssp CTTTEEEEEEEETTSCCSCCCTTSHHHHHHHHHHHHHHHC
T ss_pred CCcceEEEEEEEHHHhhhcccCcHHHHHHHHHHHHHHHhh
Confidence 5 78999999999999954443344577888888776644
No 2
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=100.00 E-value=1.1e-34 Score=252.13 Aligned_cols=184 Identities=46% Similarity=0.830 Sum_probs=160.3
Q ss_pred cCCCCcCCCCCCcccccCCCCcceeecCCCCceeecCCcEEEEEEEeeCCEEEEEEeecCCCCCceeeceEEeeCCCCHH
Q 022283 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAA 182 (299)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~vV~~iv~~~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~e 182 (299)
.++|||.||+++....++|+...+..|+.||+..|++|.++|++|+.++++|||++|...+..|.|.+|||+||+|||++
T Consensus 2 ~~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~ii~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~ 81 (189)
T 3cng_A 2 HMKFCSQCGGEVILRIPEGDTLPRYICPKCHTIHYQNPKVIVGCIPEWENKVLLCKRAIAPYRGKWTLPAGFMENNETLV 81 (189)
T ss_dssp -CCBCTTTCCBCEEECCTTCSSCEEEETTTTEEECCCCEEEEEEEEEETTEEEEEEESSSSSTTCEECSEEECCTTCCHH
T ss_pred CcccCchhCCccccccccCCCCcceECCCCCCccCCCCceEEEEEEEeCCEEEEEEccCCCCCCeEECceeeccCCCCHH
Confidence 47999999999998888777888999999999999999999999888899999999987655789999999999999999
Q ss_pred HHHHHHHHHHhCCceeeccceeeeecCCCCEEEEEEEEEecCCCCCCCCcceeeEEecCCCCCCCCCCCccHHHHHHHHH
Q 022283 183 EGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLFI 262 (299)
Q Consensus 183 eAa~REv~EEtGl~v~~~~~~~~~~~p~~~~~~~~f~a~~~~~~~~~~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l 262 (299)
+||+||++||||+++....+++.+.++..+..+++|.+....+++...+|..+++|+++++++...+.++....+|++++
T Consensus 82 ~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~l~~~~~~~~l~~~l 161 (189)
T 3cng_A 82 QGAARETLEEANARVEIRELYAVYSLPHISQVYMLFRAKLLDLDFFPGIESLEVRLFGEQEIPWNDIAFRVIHDPLKRYM 161 (189)
T ss_dssp HHHHHHHHHHHCCCEEEEEEEEEEEEGGGTEEEEEEEEEECCSCCCCCTTEEEEEEECTTTCCGGGBSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCccccceeEEEEecCCCcEEEEEEEEEeCCCccCCCccceeEEEECHHHcCcccccChHHHHHHHHHH
Confidence 99999999999999998888888777777788899999987766555688899999999999866788999999999999
Q ss_pred HHHHcCCceeEeecccCCCCCCCC
Q 022283 263 DDIRMGKLNFHYGTINKRPGSSPS 286 (299)
Q Consensus 263 ~~~~~g~~~~~~~~~~~~~~~~p~ 286 (299)
+....+.|++|.|+.++....+||
T Consensus 162 ~~~~~~~~~~y~g~~~~~~~~~~~ 185 (189)
T 3cng_A 162 EERHHGQPAFHLGIINKPQAGSNS 185 (189)
T ss_dssp HHHHHSSCCCEEEECCCC------
T ss_pred HhccCCCcceEeeeccCcccCCCC
Confidence 999999999999988765555544
No 3
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=99.91 E-value=1.3e-25 Score=211.37 Aligned_cols=187 Identities=14% Similarity=0.198 Sum_probs=142.0
Q ss_pred cccceeccccccC--CCCCC----cchH-HHHHHHHhhhhcCCCCcCCCCCCcccccCCCCcceeecCCCCceeecCCcE
Q 022283 70 RASRVCATRSESN--QDATS----SHPS-SAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKM 142 (299)
Q Consensus 70 ~~~~~~~~r~~~~--~~~~~----~~~~-~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~ 142 (299)
.++....+|+++. .+..+ .... +.|.+|.+|+.+++||+.||.++... ..+. .|+...|+++.+
T Consensus 139 ~~iSST~IR~~~~~~g~~~~~i~~lvP~~~va~~I~~w~~~~r~c~~c~~~~~~~------~~~~---~~~~~~~~~~~~ 209 (352)
T 2qjt_B 139 KNFNATEFRQKFYNGIISKQYMCSNDPKLGTYNFLTKFMDTQVYQDLVAENNYVI------EYKR---LWLKAPFKPNFV 209 (352)
T ss_dssp TCCCHHHHHHHHHTTCCCGGGCSCSSTTSHHHHHHHHHTTSHHHHHHHHHHHHHH------HHHH---HHSSSSSCCEEE
T ss_pred CCCCchHHHHHHhccCcccchhhhcCChHHHHHHHHHHhcChHHhHhhhhHHHHH------HHHH---HhcccCCCCCce
Confidence 3456667776543 23233 3566 89999999999999999999997432 1222 678889999999
Q ss_pred EEEEEEeeCCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccce----eeeecCCC------C
Q 022283 143 VVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPF----AQLDIPRI------G 212 (299)
Q Consensus 143 vV~~iv~~~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~----~~~~~p~~------~ 212 (299)
+|++++.++++|||++|...+..|.|++|||+||+|||+++||+||++||||+++....+. ....++.+ +
T Consensus 210 ~v~~vv~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (352)
T 2qjt_B 210 TVDALVIVNDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVFDYPDRSVRGR 289 (352)
T ss_dssp EEEEEEEETTEEEEEEESSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHHHHHHEEEEEEECCTTSCTTSE
T ss_pred EEEEEEEECCEEEEEEEcCCCCCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcccchhcceeeeeEEecCCCCCCCcc
Confidence 9998888999999999987665689999999999999999999999999999998765432 23333322 2
Q ss_pred EEEEEEEEEecCCC--CC--CCCcceeeEEecC-CCCCCC-CCCCccHHHHHHHHHHHH
Q 022283 213 QIYIIFLAKLKRPH--FS--PGPESSECRLFAL-DEIPFD-SLAFSSISVTLQLFIDDI 265 (299)
Q Consensus 213 ~~~~~f~a~~~~~~--~~--~~~E~~~~~W~~~-deL~~~-~laf~s~~~~l~~~l~~~ 265 (299)
..+++|.+.+..++ +. ..+|..+++|+++ ++++.. ...++..+.+++++++..
T Consensus 290 ~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~~el~~~~~~~~~~~~~il~~~~~~l 348 (352)
T 2qjt_B 290 TISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKNICDRMLEDHYQIITILLEEC 348 (352)
T ss_dssp EEEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHHTTTSBSTTHHHHHHHHHHHT
T ss_pred EEEEEEEEEEeCCCCCCccCCCccceEEEEecHHHHHHhhhhhhChhHHHHHHHHHHHh
Confidence 36778888876654 22 3478999999999 998742 234677788888888654
No 4
>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*
Probab=99.87 E-value=1.2e-22 Score=167.33 Aligned_cols=121 Identities=23% Similarity=0.404 Sum_probs=98.0
Q ss_pred cEEEEEEEeeCCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeec--CCCC----EE
Q 022283 141 KMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI--PRIG----QI 214 (299)
Q Consensus 141 ~~vV~~iv~~~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~--p~~~----~~ 214 (299)
..++++||.++++|||++|. .|.|.+|||+||+|||+++||+||++||||+++....+++...+ +..+ ..
T Consensus 4 ~~aag~vv~~~~~vLL~~r~----~g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~ 79 (134)
T 3i7u_A 4 EFSAGGVLFKDGEVLLIKTP----SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIFKT 79 (134)
T ss_dssp EEEEEEEEEETTEEEEEECT----TSCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEeC----CCcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeeeeeeeeEEecCCCceEEEE
Confidence 45677888889999999874 57899999999999999999999999999999998888775432 1111 23
Q ss_pred EEEEEEEecCCCCCCCCcceeeEEecCCCCCCCCCCCccHHHHHHHHHHHHH
Q 022283 215 YIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLFIDDIR 266 (299)
Q Consensus 215 ~~~f~a~~~~~~~~~~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~~~~ 266 (299)
.++|.+...++++.+++|+.+++||++++++ ..+.++..+.+++++++-..
T Consensus 80 ~~~f~~~~~~~~~~~~~E~~~~~W~~~~e~~-~~l~~~~~r~il~~a~~l~~ 130 (134)
T 3i7u_A 80 VKYYLMKYKEGEPRPSWEVKDAKFFPIKEAK-KLLKYKGDKEIFEKALKLKE 130 (134)
T ss_dssp EEEEEEEEEEECCCCCTTSSEEEEEEHHHHH-HHBCSHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEcCCcCcCChhheEEEEEEHHHHh-hhcCChHHHHHHHHHHHHHH
Confidence 4568888877777778899999999999987 35678888888888876544
No 5
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}
Probab=99.87 E-value=3.8e-21 Score=157.27 Aligned_cols=126 Identities=25% Similarity=0.470 Sum_probs=100.6
Q ss_pred CceeecCCcEEEEEEEee---CCE--EEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeee
Q 022283 133 GKIAYQNPKMVVGCLIEH---DKK--ILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLD 207 (299)
Q Consensus 133 g~~~y~~p~~vV~~iv~~---~~k--ILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~ 207 (299)
|+. |.+|.++|.+++.+ +++ |||++|...+ +.|.+|||++|+|||+++||+||++||||+++....+++.+.
T Consensus 2 ~~~-y~~p~~~v~~vi~~~~~~~~~~vLl~~r~~~~--~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~ 78 (139)
T 2yyh_A 2 GFN-VKTPLLATDVIIRLWDGENFKGIVLIERKYPP--VGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMGVYS 78 (139)
T ss_dssp CCC-CCCCEEEEEEEEEEEETTEEEEEEEEEECSSS--CSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEEEEEC
T ss_pred Ccc-ccCCeEEEEEEEEEEcCCCcEEEEEEEecCCC--CcEECccccCCCCCCHHHHHHHHHHHHHCCCcccceEEEEEC
Confidence 566 89999988887765 777 9999998654 349999999999999999999999999999999888888776
Q ss_pred cCC----CCEEEEEEEEEecCCCCCCCCcceeeEEecCCCCCCCCCCCccHHHHHHHHHH
Q 022283 208 IPR----IGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLFID 263 (299)
Q Consensus 208 ~p~----~~~~~~~f~a~~~~~~~~~~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~ 263 (299)
.+. .+..+++|.+.. .+++...+|..+++|+++++++...+.++. .+++..+++
T Consensus 79 ~~~~~~~~~~~~~~f~~~~-~~~~~~~~e~~~~~W~~~~el~~~~l~~~~-~~~l~~~l~ 136 (139)
T 2yyh_A 79 DPERDPRAHVVSVVWIGDA-QGEPKAGSDAKKVKVYRLEEIPLDKLVFDH-KKIILDFLK 136 (139)
T ss_dssp CTTSCTTSCEEEEEEEEEE-ESCCCCCTTEEEEEEECTTSCCGGGBCTTH-HHHHHHHHH
T ss_pred CCCcCCCceEEEEEEEEec-CCccCCCCCcceEEEEEHHHCCHhhcCCCH-HHHHHHHHh
Confidence 643 345677888887 455555678899999999999833666764 566666654
No 6
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A
Probab=99.87 E-value=3.5e-21 Score=169.32 Aligned_cols=141 Identities=21% Similarity=0.322 Sum_probs=112.9
Q ss_pred eecCCCCceeecCCcEEEEEEEeeCCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeee
Q 022283 127 AICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQL 206 (299)
Q Consensus 127 ~~C~~Cg~~~y~~p~~vV~~iv~~~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~ 206 (299)
..|..++ |++|.++|.++|.++++|||++|.. .|.|.+|||++|+|||+++||+||++||||+++....+++.+
T Consensus 57 ~~~~~~~---~~~~~~~v~~vv~~~~~vLLv~r~~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~l~~~ 130 (205)
T 3q1p_A 57 LFASETG---YQTPKVDIRAVVFQNEKLLFVKEKS---DGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAIF 130 (205)
T ss_dssp HHSCCCS---SCCCEEEEEEEEEETTEEEEEEC------CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEE
T ss_pred HHccccC---CCCCcceEEEEEEECCEEEEEEEcC---CCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Confidence 4555555 8999999988888899999999872 689999999999999999999999999999999988888876
Q ss_pred ec-----C--CCCEEEEEEEEEecCCCCCCCCcceeeEEecCCCCCCCCCCCccHHHHHHHHHHHHHcCCceeEe
Q 022283 207 DI-----P--RIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLFIDDIRMGKLNFHY 274 (299)
Q Consensus 207 ~~-----p--~~~~~~~~f~a~~~~~~~~~~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~~~~~g~~~~~~ 274 (299)
.. + ..+...++|.+....+++..++|..+++|+++++++... ..+.....++.+++.+...++..++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~l~-~~~~~~~~i~~~~~~~~~~~~~~~~ 204 (205)
T 3q1p_A 131 DKEKHQPSPSATHVYKIFIGCEIIGGEKKTSIETEEVEFFGENELPNLS-IARNTEDQIKEMFAYMKDPQKEKLI 204 (205)
T ss_dssp EHHHHSCCCCSSCEEEEEEEEEEEEECCCCCTTSCCEEEECTTSCCCBC-TTTCCHHHHHHHHHHHHCTTSCCEE
T ss_pred eccccCCCCCCceEEEEEEEEEecCCccCCCCcceEEEEEeHHHhhhcC-CCccHHHHHHHHHHHHhCCCCCcCC
Confidence 64 1 124556778888877767677899999999999999322 3456678889999888887766554
No 7
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}
Probab=99.86 E-value=5.9e-21 Score=168.00 Aligned_cols=138 Identities=30% Similarity=0.498 Sum_probs=109.0
Q ss_pred CCceeecCCcEEEEEEEeeCCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeec---
Q 022283 132 CGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI--- 208 (299)
Q Consensus 132 Cg~~~y~~p~~vV~~iv~~~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~--- 208 (299)
|+...|++|.+.|.++|.++++|||++|. .|.|++|||++|+|||+++||+||++||||+++....+++.+.+
T Consensus 61 ~~~~~y~~~~~~v~~vv~~~~~vLLvrr~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~ 136 (206)
T 3o8s_A 61 CNETGYQTPKLDTRAAIFQEDKILLVQEN----DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDKHKN 136 (206)
T ss_dssp -------CCEEEEEEEEEETTEEEEEECT----TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEEEHHHH
T ss_pred ccccCCCCCCccEEEEEEECCEEEEEEec----CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEecccc
Confidence 33444899999998888888999999987 58899999999999999999999999999999999888887763
Q ss_pred CC----CCEEEEEEEEEecCCCCCCCCcceeeEEecCCCCCCCCCCCccHHHHHHHHHHHHHcCCceeEe
Q 022283 209 PR----IGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLFIDDIRMGKLNFHY 274 (299)
Q Consensus 209 p~----~~~~~~~f~a~~~~~~~~~~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~~~~~g~~~~~~ 274 (299)
.. .+...++|.+....+++..++|..+++|+++++++...+ .+.....++.+++.....++..++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~l~~-~~~~~~~l~~~~~~~~~~~~~~~~ 205 (206)
T 3o8s_A 137 NPAKSAHRVTKVFILCRLLGGEFQPNSETVASGFFSLDDLPPLYL-GKNTAEQLALCLEASRSEHWETRF 205 (206)
T ss_dssp CC-----CEEEEEEEEEEEEECCCCCSSCSEEEEECTTSCCCBCT-TTCCHHHHHHHHHHHHCSSCCCEE
T ss_pred CCCCCCceEEEEEEEEEecCCeecCCCCceEEEEEeHHHhhhccC-CCchHHHHHHHHHHHHCCCCCCCC
Confidence 22 245567788888777666668999999999999993322 366688899999998888777654
No 8
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.85 E-value=1.5e-22 Score=189.32 Aligned_cols=166 Identities=17% Similarity=0.276 Sum_probs=123.1
Q ss_pred chHHHHHHHHhhhhcCCCCcCCCCCCcccccCCCCcceeecCCCCceeecCCcEEEEEEEeeCCEEEEEEeecCCCCCce
Q 022283 89 HPSSAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLW 168 (299)
Q Consensus 89 ~~~~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~vV~~iv~~~~kILL~rr~~~p~~g~w 168 (299)
-..+.+..+..|+...+||..||...... ..+. .|+...|+.+.++|++++.++++|||++|...+..|.|
T Consensus 160 vp~~v~~~i~~~~~~~r~~~l~~~~~~~~------~~~~---~~~~~~~~~~~~~v~~vi~~~~~vLL~~r~~~~~~g~w 230 (341)
T 2qjo_A 160 VPPAIADYLQTFQKSERYIALCDEYQFLQ------AYKQ---AWATAPYAPTFITTDAVVVQAGHVLMVRRQAKPGLGLI 230 (341)
T ss_dssp SCHHHHHHHHHHTTSHHHHHHHHHHHHHH------HHHH---TTTTSSSCCCEEEEEEEEEETTEEEEEECCSSSSTTCE
T ss_pred CCHHHHHHHHHhcchHHHHHHHHHHHHHH------HHHh---hhhccCCCCCceEEEEEEEeCCEEEEEEecCCCCCCeE
Confidence 34678889999999999999999875332 1121 27888899999999998889999999999876657899
Q ss_pred eeceEEeeCCCCHHHHHHHHHHHHhCCceeecccee----eeec--CC----CCEEEEEEEEEecCCCC---CCCCccee
Q 022283 169 TLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFA----QLDI--PR----IGQIYIIFLAKLKRPHF---SPGPESSE 235 (299)
Q Consensus 169 ~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~----~~~~--p~----~~~~~~~f~a~~~~~~~---~~~~E~~~ 235 (299)
++|||+||+|||+++||+||++||||+++....+++ ...+ +. .+..+++|.+....++. ..++|..+
T Consensus 231 ~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~ 310 (341)
T 2qjo_A 231 ALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFDAPGRSLRGRTITHAYFIQLPGGELPAVKGGDDAQK 310 (341)
T ss_dssp ECSEEECCTTSCHHHHHHHHHHHHHCCSSCHHHHHHTEEEEEEECCTTSCTTSCEEEEEEEEECCSSSCCCCC------C
T ss_pred ECCCCcCCCCCCHHHHHHHHHhhhhCCccccccccccccceEEEeCCCCCCCCcEEEEEEEEEecCCCcCccCCCCceee
Confidence 999999999999999999999999999998766543 2223 32 13567788888765542 23478889
Q ss_pred eEEecCCCCCCC-CCCCccHHHHHHHHHH
Q 022283 236 CRLFALDEIPFD-SLAFSSISVTLQLFID 263 (299)
Q Consensus 236 ~~W~~~deL~~~-~laf~s~~~~l~~~l~ 263 (299)
++|+++++++.. ...++..+.+++.++.
T Consensus 311 ~~W~~~~el~~~~~~~~~~~~~il~~~~~ 339 (341)
T 2qjo_A 311 AWWMSLADLYAQEEQIYEDHFQIIQHFVS 339 (341)
T ss_dssp EEEEEHHHHHHTGGGBCTTHHHHHHHHC-
T ss_pred EEEeeHHHHhhhhhhhchHHHHHHHHHHh
Confidence 999999999842 1235666777776653
No 9
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A
Probab=99.84 E-value=1.4e-20 Score=156.04 Aligned_cols=124 Identities=23% Similarity=0.431 Sum_probs=99.7
Q ss_pred CCcEEEEEEEeeCCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeecCC---CCEEE
Q 022283 139 NPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR---IGQIY 215 (299)
Q Consensus 139 ~p~~vV~~iv~~~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~p~---~~~~~ 215 (299)
+|.++|++++.++++|||++|.. +..|.|.+|||++|+|||+++||+||++||||+++....+++...+.. .....
T Consensus 3 ~p~~~v~~ii~~~~~vLl~~r~~-~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 81 (153)
T 3shd_A 3 KPHVTVACVVHAEGKFLVVEETI-NGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLR 81 (153)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEE-TTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCTTSCCEEE
T ss_pred CCceEEEEEEEeCCEEEEEEecC-CCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEEecCCCceEEE
Confidence 57788888899999999999973 336889999999999999999999999999999999888888765533 23455
Q ss_pred EEEEEEecCCC-CCC-CCcceeeEEecCCCC-CCCCCCCccHHHHHHHHHH
Q 022283 216 IIFLAKLKRPH-FSP-GPESSECRLFALDEI-PFDSLAFSSISVTLQLFID 263 (299)
Q Consensus 216 ~~f~a~~~~~~-~~~-~~E~~~~~W~~~deL-~~~~laf~s~~~~l~~~l~ 263 (299)
++|.+....+. ..+ ++|..+++|++++++ .......+....++.+|++
T Consensus 82 ~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~~~ 132 (153)
T 3shd_A 82 FLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQS 132 (153)
T ss_dssp EEEEEECSSCCCCCCCSTTCCEEEEECHHHHHTCSCBSSTHHHHHHHHHHH
T ss_pred EEEEEEccccCcCCCCcccceeeEEecHHHhhccccccCchHHHHHHHHHh
Confidence 78888877653 333 478899999999999 3336667777777777765
No 10
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}
Probab=99.84 E-value=4e-20 Score=155.16 Aligned_cols=128 Identities=24% Similarity=0.296 Sum_probs=96.7
Q ss_pred CCceeecCCcEEEEEEEeeCCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeecCC-
Q 022283 132 CGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR- 210 (299)
Q Consensus 132 Cg~~~y~~p~~vV~~iv~~~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~p~- 210 (299)
+.....+.+.++|.+++.++++|||++|.+.+..|.|.+|||++|+|||+++||+||++||||+++....+++.+...+
T Consensus 20 ~~m~~~~~~~~~v~~vi~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~ 99 (157)
T 4dyw_A 20 GSMQHTEQPRVGCGAAIVRDGRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCVVDHIDA 99 (157)
T ss_dssp ------CCCEEEEEEEEEETTEEEEEEECSSSSTTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEEEEEEEEEET
T ss_pred CCCCCCCCceeEEEEEEEECCEEEEEEecCCCCCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEeecc
Confidence 3334445677888888888999999999876667899999999999999999999999999999999888887665432
Q ss_pred -C--CEEEEEEEEEecCCCCCC--CCcceeeEEecCCCCCCCCCCCccHHHHHHHH
Q 022283 211 -I--GQIYIIFLAKLKRPHFSP--GPESSECRLFALDEIPFDSLAFSSISVTLQLF 261 (299)
Q Consensus 211 -~--~~~~~~f~a~~~~~~~~~--~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~ 261 (299)
. +..+++|.+....++... .+|..+++|+++++++. ...+..+.+++.+
T Consensus 100 ~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~--~l~~~~~~~l~~l 153 (157)
T 4dyw_A 100 ANGEHWVAPVYLAHAFSGEPRVVEPDRHEALGWFALDDLPQ--PLTHATRIALEQV 153 (157)
T ss_dssp TTTEEEEEEEEEESEEESCCCCSCTTTEEEEEEEETTSCCS--SBCHHHHHHHHHH
T ss_pred CCCcEEEEEEEEEEEcCCCcccCCCCcEeEEEEECHHHccc--ccCHHHHHHHHHH
Confidence 2 345567888766555332 37889999999999993 4455556666554
No 11
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0
Probab=99.84 E-value=3.3e-20 Score=152.05 Aligned_cols=123 Identities=19% Similarity=0.180 Sum_probs=92.5
Q ss_pred CCcEEEEEEEeeCCEEEEEEeecCC---CCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeecCC--CCE
Q 022283 139 NPKMVVGCLIEHDKKILLCKRKIEP---SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR--IGQ 213 (299)
Q Consensus 139 ~p~~vV~~iv~~~~kILL~rr~~~p---~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~p~--~~~ 213 (299)
++..++++++.++++|||++|...+ ..|.|.+|||++|+||++++||.||++||||+++....+++.+.+.+ .+.
T Consensus 4 ~~~~~v~~vi~~~~~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~ 83 (140)
T 3gwy_A 4 KSIEVVAAVIRLGEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLTVHHTYPDFEI 83 (140)
T ss_dssp SCEEEEEEEEEETTEEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCSSCCE
T ss_pred eEEEEEEEEEEeCCEEEEEEecCCCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceEEEEEEEEeCCceE
Confidence 3455667777779999999998765 46899999999999999999999999999999999998888766543 456
Q ss_pred EEEEEEEEecCCCCCCCCcceeeEEecCCCCCCCCCCCccHHHHHHHHHH
Q 022283 214 IYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLFID 263 (299)
Q Consensus 214 ~~~~f~a~~~~~~~~~~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~ 263 (299)
.+++|.+....+++.. +|..+++|+++++++...+ .+..+.+++.+.+
T Consensus 84 ~~~~f~~~~~~~~~~~-~E~~~~~W~~~~el~~~~~-~~~~~~il~~~~~ 131 (140)
T 3gwy_A 84 TMHAFLCHPVGQRYVL-KEHIAAQWLSTREMAILDW-AEADKPIVRKISE 131 (140)
T ss_dssp EEEEEEEEECCSCCCC-CSSCEEEEECHHHHTTSCB-CGGGHHHHHHHHC
T ss_pred EEEEEEEEecCCcccc-cccceeEeccHHHHhhCCC-CcccHHHHHHHHh
Confidence 7788999887765433 6888999999999984333 2444556655543
No 12
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}
Probab=99.83 E-value=2.9e-20 Score=154.93 Aligned_cols=121 Identities=25% Similarity=0.320 Sum_probs=94.6
Q ss_pred EEEEE-EEeeCCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeecCCCCEEEEEEEE
Q 022283 142 MVVGC-LIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLA 220 (299)
Q Consensus 142 ~vV~~-iv~~~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~p~~~~~~~~f~a 220 (299)
.+|++ +++++++|||++|.+.+..|.|.+|||++|+|||+++||+||++||||+++....+++.+... .+...++|.+
T Consensus 21 ~~v~~~i~~~~~~vLl~~r~~~~~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~-~~~~~~~f~~ 99 (156)
T 3gg6_A 21 YVVLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSVEERG-PSWVRFVFLA 99 (156)
T ss_dssp EEEEEECBCTTSEEEEEECCCTTSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEESS-TTEEEEEEEE
T ss_pred EEEEEEEEeCCCEEEEEEecCCCCCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeEEEEEcCC-CCEEEEEEEE
Confidence 34444 445678999999987665789999999999999999999999999999999999988887643 4566778888
Q ss_pred EecCCCCC----CCCcceeeEEecCCCCCCCCCCCccHHHHHHHHHHH
Q 022283 221 KLKRPHFS----PGPESSECRLFALDEIPFDSLAFSSISVTLQLFIDD 264 (299)
Q Consensus 221 ~~~~~~~~----~~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~~ 264 (299)
....++.. .++|..+++|+++++++. .+.......++......
T Consensus 100 ~~~~~~~~~~~~~~~E~~~~~W~~~~el~~-~~~~~~~~~~l~~~~~~ 146 (156)
T 3gg6_A 100 RPTGGILKTSKEADAESLQAAWYPRTSLPT-PLRAHDILHLVELAAQY 146 (156)
T ss_dssp EEEEECCCCGGGCSSSCSEEEEEETTSCCS-SBSCTHHHHHHHHHHHH
T ss_pred EeeCCeeccCCCCCcceeeeEEEcHHHCcc-cccchhHHHHHHHHHHH
Confidence 87655433 237888999999999983 55556666666655443
No 13
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}
Probab=99.83 E-value=5.2e-20 Score=153.05 Aligned_cols=126 Identities=23% Similarity=0.259 Sum_probs=98.0
Q ss_pred cEEEEEEEe-eCCEEEEEEeecC--CCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeecCC--CCEEE
Q 022283 141 KMVVGCLIE-HDKKILLCKRKIE--PSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR--IGQIY 215 (299)
Q Consensus 141 ~~vV~~iv~-~~~kILL~rr~~~--p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~p~--~~~~~ 215 (299)
..+|++++. .+++|||++|... +..|.|.+|||++|+|||+++||+||++||||+++....+++.+.+.+ ....+
T Consensus 8 ~~~v~~vi~~~~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 87 (153)
T 3grn_A 8 IISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQVNFELTEKKVIA 87 (153)
T ss_dssp EEEEEEEEECTTCCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSEEEEEEEECSSCEEEE
T ss_pred EEEEEEEEEcCCCcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceEEEEEEEecCCceEEE
Confidence 345555554 5789999999864 236999999999999999999999999999999999888888765533 34566
Q ss_pred EEEEEEecCCCCCCCCcceeeEEecCCCCCCCCCCCccHHHHHHHHHHHHH
Q 022283 216 IIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLFIDDIR 266 (299)
Q Consensus 216 ~~f~a~~~~~~~~~~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~~~~ 266 (299)
++|.+....+++..++|..+++|++++++.......+..+.+++.+++...
T Consensus 88 ~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~l~~l~~~~~ 138 (153)
T 3grn_A 88 IVFDGGYVVADVKLSYEHIEYSWVSLEKILGMETLPAYFRDFFERFDRENK 138 (153)
T ss_dssp EEEEEEECCCCCCCCTTEEEEEEECHHHHTTCSSSCHHHHHHHHHHHHHHT
T ss_pred EEEEEEecCCcEecCCCcceEEEEEHHHhhhcccchHHHHHHHHHHhcccc
Confidence 788888777776667899999999999998433134555667777766544
No 14
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}
Probab=99.83 E-value=3.9e-20 Score=156.60 Aligned_cols=134 Identities=20% Similarity=0.287 Sum_probs=91.4
Q ss_pred eeecCCCCceeecCCcEEEEEEEeeCCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceee
Q 022283 126 RAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQ 205 (299)
Q Consensus 126 ~~~C~~Cg~~~y~~p~~vV~~iv~~~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~ 205 (299)
...|+.+.........+.|++++.++++|||++|... .|.|.+|||++|+|||+++||+||++||||+++....+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~v~~ii~~~~~vLL~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~ 85 (171)
T 3id9_A 8 CKFNRKRRLYIENIMQVRVTGILIEDEKVLLVKQKVA--NRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKKLLYV 85 (171)
T ss_dssp --------------CEEEEEEEEEETTEEEEEECSST--TCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_pred cccChhhhhccCCceEEEEEEEEEECCEEEEEEEECC--CCeEECCCccCCCCCCHHHHHHHHHHHHHCCccccceEEEE
Confidence 3456666655555667778888888999999998863 68999999999999999999999999999999988888887
Q ss_pred eecCCC--CEEEEEEEEEecCCCCCC-----C-CcceeeEEecCCCCCCCCCCCccHHHHHHHHH
Q 022283 206 LDIPRI--GQIYIIFLAKLKRPHFSP-----G-PESSECRLFALDEIPFDSLAFSSISVTLQLFI 262 (299)
Q Consensus 206 ~~~p~~--~~~~~~f~a~~~~~~~~~-----~-~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l 262 (299)
+..+.. ...+++|.+....++... + +|..+++|++++++....+. +..+.++++.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~-~~~~~~l~~~~ 149 (171)
T 3id9_A 86 CDKPDASPSLLHITFLLERIEGEITLPSNEFDHNPIHDVQMVPINELSYYGFS-ETFINLISGGL 149 (171)
T ss_dssp EEETTSSSCEEEEEEEEEEC-------------CCCCCEEEEETGGGGGGTCC-TTCSHHHHHGG
T ss_pred EcccCCCCcEEEEEEEEEEcCCcccCCccCCCcCeeeeEEEEeHHHHhhCCCC-HHHHHHHHHhh
Confidence 776543 356677888776655332 2 77889999999999844332 33455555554
No 15
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}
Probab=99.82 E-value=2.8e-19 Score=149.75 Aligned_cols=118 Identities=23% Similarity=0.223 Sum_probs=87.8
Q ss_pred cEEEEEEEeeCCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeee-----------ec-
Q 022283 141 KMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQL-----------DI- 208 (299)
Q Consensus 141 ~~vV~~iv~~~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~-----------~~- 208 (299)
..+|++++.++++|||++|+. .|.|.+|||+||+|||+++||+||++||||+++....+++.+ .+
T Consensus 6 ~~~v~~vi~~~~~vLL~~r~~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (159)
T 3f6a_A 6 HFTVSVFIVCKDKVLLHLHKK---AKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPIDINLKKSCDLSGEKLLI 82 (159)
T ss_dssp CEEEEEEEEETTEEEEEECSS---SCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHTTCEEEC
T ss_pred eEEEEEEEEECCEEEEEEcCC---CCeEECCccCccCCCCHHHHHHHHHHHHhCCCceeccccccccccccccccccccc
Confidence 456666777789999999873 688999999999999999999999999999999887766421 11
Q ss_pred -C----------CCCEEEEEEEEEecCCCCCC-CCcceeeEEecCCCCCCCCCCCccHHHHHHHH
Q 022283 209 -P----------RIGQIYIIFLAKLKRPHFSP-GPESSECRLFALDEIPFDSLAFSSISVTLQLF 261 (299)
Q Consensus 209 -p----------~~~~~~~~f~a~~~~~~~~~-~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~ 261 (299)
| ....+.++|.+....+++.. .+|..+++|+++++++......+..+.+.+.+
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 147 (159)
T 3f6a_A 83 NPIHTILGDVSPNHSHIDFVYYATTTSFETSPEIGESKILKWYSKEDLKNAHNIQENILVMATEA 147 (159)
T ss_dssp CCSEEEEECSSSSSCEEEEEEEEECSCSCCCCCTTSCCCEEEECSSSSTTCSSSCHHHHHHHHHH
T ss_pred CccccccccCCCCceEEEEEEEEEeCCCCcCCCCCcccceEEeeHHHHhhCcCCChhHHHHHHHH
Confidence 1 11244577889887776665 48899999999999994443333333333333
No 16
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Probab=99.82 E-value=1.7e-20 Score=151.68 Aligned_cols=120 Identities=23% Similarity=0.363 Sum_probs=96.0
Q ss_pred EEEEEEEeeCCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeecCCC------CEEE
Q 022283 142 MVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI------GQIY 215 (299)
Q Consensus 142 ~vV~~iv~~~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~p~~------~~~~ 215 (299)
.+|++++.++++|||++|.. |.|.+|||++|+|||+++||.||++||||+++....+++...+.+. +..+
T Consensus 5 ~~~~~vi~~~~~vLl~~r~~----~~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (134)
T 2pbt_A 5 FSAGGVLFKDGEVLLIKTPS----NVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIFKTV 80 (134)
T ss_dssp EEEEEEEEETTEEEEEECTT----SCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred eEEEEEEEECCEEEEEEeCC----CcEECCccccCCCCCHHHHHHHHHHHHHCCccEEeeeeeEEEEEeeCCCcEEEEEE
Confidence 45666676788999999863 8999999999999999999999999999999998888876543221 2455
Q ss_pred EEEEEEecCCCCCCCCcceeeEEecCCCCCCCCCCCccHHHHHHHHHHHHH
Q 022283 216 IIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLFIDDIR 266 (299)
Q Consensus 216 ~~f~a~~~~~~~~~~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~~~~ 266 (299)
++|.+....+...+.+|..+++|+++++++ ..+.++..+.+++.+++...
T Consensus 81 ~~~~~~~~~~~~~~~~e~~~~~W~~~~el~-~~~~~~~~~~~l~~~~~~~~ 130 (134)
T 2pbt_A 81 KYYLMKYKEGEPRPSWEVKDAKFFPIKEAK-KLLKYKGDKEIFEKALKLKE 130 (134)
T ss_dssp EEEEEEEEEECCCCCTTSSEEEEEEHHHHH-HHCCSHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCcCCCcceeEEEEEcHHHHH-hhhcchhHHHHHHHHHHHhh
Confidence 778888776665555689999999999998 34566777888888887654
No 17
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1
Probab=99.82 E-value=4.1e-20 Score=152.85 Aligned_cols=124 Identities=20% Similarity=0.202 Sum_probs=93.2
Q ss_pred CCcEEEEEEEeeCCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeec--CCCC--EE
Q 022283 139 NPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI--PRIG--QI 214 (299)
Q Consensus 139 ~p~~vV~~iv~~~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~--p~~~--~~ 214 (299)
+|.++|++++.++++|||++|...+..|.|.+|||++|+|||+++||+||++||||+++....+++.+.+ +..+ ..
T Consensus 6 ~~~~~v~~ii~~~~~vLl~~r~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 85 (153)
T 2b0v_A 6 KPNVTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNGTTYL 85 (153)
T ss_dssp CCEEEEEEECEETTEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTTEEEE
T ss_pred cCCEEEEEEEeeCCEEEEEEEcCCCCCCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceEEEEEEEeCCCCCcEEE
Confidence 4567777778889999999998653367999999999999999999999999999999998888876644 3222 34
Q ss_pred EEEEEEEecCCC--CCCCCcceeeEEecCCCCCCC--CCCCccHHHHHHHHH
Q 022283 215 YIIFLAKLKRPH--FSPGPESSECRLFALDEIPFD--SLAFSSISVTLQLFI 262 (299)
Q Consensus 215 ~~~f~a~~~~~~--~~~~~E~~~~~W~~~deL~~~--~laf~s~~~~l~~~l 262 (299)
+++|.+....+. ...++|..+++|+++++++.. ....+..+.++.+|+
T Consensus 86 ~~~f~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~~l~~~~ 137 (153)
T 2b0v_A 86 RFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQAMHRTPLVMQCIEDYH 137 (153)
T ss_dssp EEEEEEEEEEECTTSCCCTTEEEEEEEEHHHHHHTGGGBSSTHHHHHHHHHH
T ss_pred EEEEEEEeCCCCCCCCCCCCeeeEEEecHHHHhhhhcccCcHHHHHHHHHHH
Confidence 466888766543 233578889999999999842 233444555555544
No 18
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A
Probab=99.81 E-value=1.8e-19 Score=154.54 Aligned_cols=124 Identities=21% Similarity=0.272 Sum_probs=94.5
Q ss_pred cCCcEEEEEEEeeCCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeecCCC----CE
Q 022283 138 QNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI----GQ 213 (299)
Q Consensus 138 ~~p~~vV~~iv~~~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~p~~----~~ 213 (299)
+.+..++++++.++++|||++|.+.+..|.|.+|||++|+|||+++||+||++||||+++..+.+++.+.+.+. ..
T Consensus 22 ~~~~~~~~~vi~~~~~vLL~~r~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~ 101 (176)
T 3q93_A 22 GASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELM 101 (176)
T ss_dssp -CEEEEEEEEEECSSEEEEEEECSSTTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEEEEEEEEEETTCSCEE
T ss_pred CCCcEEEEEEEEeCCEEEEEEEcCCCCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEEEEEEEEEcCCCCcEE
Confidence 45667778888889999999997665679999999999999999999999999999999998888887654322 24
Q ss_pred EEEEEEEEecCCCCCCCCcceeeEEecCCCCCCCCCCCccHHHHHHHHHH
Q 022283 214 IYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLFID 263 (299)
Q Consensus 214 ~~~~f~a~~~~~~~~~~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~ 263 (299)
.+++|.+....+++.. .|..+++|+++++++...+ .+..+.++..+++
T Consensus 102 ~~~~f~~~~~~~~~~~-~e~~~~~W~~~~el~~~~~-~~~~~~~l~~~~~ 149 (176)
T 3q93_A 102 DVHVFCTDSIQGTPVE-SDEMRPCWFQLDQIPFKDM-WPDDSYWFPLLLQ 149 (176)
T ss_dssp EEEEEEESCEESCCCC-CSSEEEEEEETTCCCGGGB-CTTHHHHHHHHHT
T ss_pred EEEEEEEECCCCCcCC-CcceeeEEeeHHHcccccc-CcchHHHHHHHHc
Confidence 5577888665554433 4566789999999995444 3444555555553
No 19
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Probab=99.81 E-value=1.9e-19 Score=146.42 Aligned_cols=128 Identities=23% Similarity=0.201 Sum_probs=96.6
Q ss_pred cEEEEEEEeeCCEEEEEEeecCC-CCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeecCCCC--EEEEE
Q 022283 141 KMVVGCLIEHDKKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIG--QIYII 217 (299)
Q Consensus 141 ~~vV~~iv~~~~kILL~rr~~~p-~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~p~~~--~~~~~ 217 (299)
..++++|+.++++|||++|...+ ..|.|++|||++|+||++++||+||++||||+++....+++...+.+.+ ..+.+
T Consensus 9 ~~~~~~ii~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 88 (140)
T 2rrk_A 9 IEVVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEYVASHQREVSGRIIHLHA 88 (140)
T ss_dssp EEEEEEEEEETTEEEEEECCSSCSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEEEEEEEEEETTEEEEEEE
T ss_pred ceEEEEEEEcCCEEEEEEcCCCCCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecccEEEEEEEecCCcEEEEEE
Confidence 34455666788999999986543 3699999999999999999999999999999999888887766554333 44566
Q ss_pred EEEEecCCCCCCCCcceeeEEecCCCCCCCCCCCccHHHHHHHHHHHHHcCCc
Q 022283 218 FLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLFIDDIRMGKL 270 (299)
Q Consensus 218 f~a~~~~~~~~~~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~~~~~g~~ 270 (299)
|.+....+.+. ..|..++.|++++++....+ .+..+.+++.+++....+.+
T Consensus 89 ~~~~~~~~~~~-~~e~~~~~W~~~~el~~~~~-~~~~~~~l~~~~~~r~~~~~ 139 (140)
T 2rrk_A 89 WHVPDFHGTLQ-AHEHQALVWCSPEEALQYPL-APADIPLLEAFMALRAARPA 139 (140)
T ss_dssp EEESEEEECCC-CSSCSCEEEECHHHHTTSCC-CTTHHHHHHHHHHHHHHCSC
T ss_pred EEEEeeCCCcC-CCccceeEEeCHHHHhhCCC-ChhHHHHHHHHHHHhhcccC
Confidence 77765544332 36778899999999984333 35567888888887665544
No 20
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6
Probab=99.80 E-value=2e-19 Score=160.93 Aligned_cols=129 Identities=18% Similarity=0.289 Sum_probs=100.5
Q ss_pred eeecCCcEEEEEEEe---e-CCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeecCC
Q 022283 135 IAYQNPKMVVGCLIE---H-DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR 210 (299)
Q Consensus 135 ~~y~~p~~vV~~iv~---~-~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~p~ 210 (299)
..|++|.++|.++|. + +++|||++|...+..|.|.+|||+||+|||+++||+||++||||+++..+..++.+..+.
T Consensus 7 ~~~~~p~v~v~~vi~~~~~~~~~vLLv~r~~~~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~l~~~~~~~ 86 (226)
T 2fb1_A 7 SSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFGAID 86 (226)
T ss_dssp TTSCCEEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEECCTT
T ss_pred ccCCCCeEEEEEEEEEEeCCCCEEEEEECcCCCCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEEEEEeCCCC
Confidence 446788888877775 2 469999999876667899999999999999999999999999999998888787776543
Q ss_pred ----CCEEEEEEEEEecCCCCCC-CCcceeeEEecCCCCCCCCCCCccHHHHHHHHHHHHH
Q 022283 211 ----IGQIYIIFLAKLKRPHFSP-GPESSECRLFALDEIPFDSLAFSSISVTLQLFIDDIR 266 (299)
Q Consensus 211 ----~~~~~~~f~a~~~~~~~~~-~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~~~~ 266 (299)
.+.+.++|.+....+.... ++|..+++|+++++++ .++++. ..+++..++..+
T Consensus 87 r~~~~~~v~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el~--~l~~dh-~~il~~a~~rlr 144 (226)
T 2fb1_A 87 RDPGERVVSIAYYALININEYDRELVQKHNAYWVNINELP--ALIFDH-PEMVDKAREMMK 144 (226)
T ss_dssp SSSSSCEEEEEEEEECCTTSSCHHHHHHTTEEEEETTSCC--CBSTTH-HHHHHHHHHHHH
T ss_pred cCCCceEEEEEEEEEecCcccccCCccccceEEEEHHHhh--hccCCH-HHHHHHHHHHHH
Confidence 2455667888876554332 3678899999999998 677774 566666665543
No 21
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}
Probab=99.80 E-value=6.4e-19 Score=149.87 Aligned_cols=116 Identities=19% Similarity=0.202 Sum_probs=88.8
Q ss_pred cEEEEEEEeeCCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeecCCCCEEEEEEEE
Q 022283 141 KMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLA 220 (299)
Q Consensus 141 ~~vV~~iv~~~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~p~~~~~~~~f~a 220 (299)
..++++|+.+++++||++|+ .|.|.+|||+||+|||+++||+||++||||+++....+++.+..+. ..+++|.+
T Consensus 16 ~~~~~~ii~~~~~vLL~~r~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~--~~~~~f~~ 89 (163)
T 3f13_A 16 ARRATAIIEMPDGVLVTASR----GGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHITPF--NAHKVYLC 89 (163)
T ss_dssp EEEEEEECEETTEEEEEECC-------BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEEEEEEEECSS--EEEEEEEE
T ss_pred eEEEEEEEEeCCEEEEEEEC----CCeEECCceeCCCCCCHHHHHHHHHHHHHCcccceeEEEEEEecCC--eEEEEEEE
Confidence 35556677888999999885 5889999999999999999999999999999999888888776654 67778888
Q ss_pred EecCCCCCCCCcceeeEEecCCCCCCCCCCCccHHHHHHHHHHHH
Q 022283 221 KLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLFIDDI 265 (299)
Q Consensus 221 ~~~~~~~~~~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~~~ 265 (299)
.. .+++.+++|+.+++||+.++++ ..+ .+..+.++..+++..
T Consensus 90 ~~-~~~~~~~~E~~~~~W~~~~~~~-~~l-~~~~~~il~~~~~~~ 131 (163)
T 3f13_A 90 IA-QGQPKPQNEIERIALVSSPDTD-MDL-FVEGRAILRRYARLR 131 (163)
T ss_dssp EC--CCCCCCTTCCEEEEESSTTCS-SCB-CHHHHHHHHHHHHHT
T ss_pred EE-CCcCccCCCceEEEEECccccc-CCC-CHHHHHHHHHHHHhh
Confidence 75 4556666799999999955544 333 345567777776543
No 22
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*
Probab=99.80 E-value=1.5e-19 Score=144.77 Aligned_cols=114 Identities=24% Similarity=0.353 Sum_probs=89.6
Q ss_pred EEEEeeCCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeecCC--CCEEEEEEEEEe
Q 022283 145 GCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR--IGQIYIIFLAKL 222 (299)
Q Consensus 145 ~~iv~~~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~p~--~~~~~~~f~a~~ 222 (299)
+++++.+++|||++|.. |.|.+|||++|+|||+++||.||++||||+++....+++...+++ .+..+.+|.+..
T Consensus 7 ~vi~~~~~~vLl~~r~~----g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (126)
T 1vcd_A 7 GVVFNAKREVLLLRDRM----GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVEREVHWFLMR 82 (126)
T ss_dssp EEEECTTSCEEEEECTT----SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEcCCCEEEEEEECC----CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccEEeEEEEecCCceEEEEEEEEEE
Confidence 34445577999999863 789999999999999999999999999999999888887765533 345567787776
Q ss_pred cCCCCCCCCcceeeEEecCCCCCCCCCCCccHHHHHHHHHH
Q 022283 223 KRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLFID 263 (299)
Q Consensus 223 ~~~~~~~~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~ 263 (299)
..++...++|..+++|+++++++. .+.++..+.+++.+++
T Consensus 83 ~~~~~~~~~e~~~~~w~~~~el~~-~~~~~~~~~~l~~~~~ 122 (126)
T 1vcd_A 83 GEGAPRLEEGMTGAGWFSPEEARA-LLAFPEDLGLLEVALE 122 (126)
T ss_dssp EESCCCCCTTCCEEEEECHHHHHH-HBCSHHHHHHHHHHHH
T ss_pred cCCCCCCCcceeeeEEcCHHHHHH-hhcChhHHHHHHHHHH
Confidence 655544457888999999999973 4556777777777765
No 23
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}
Probab=99.80 E-value=1.1e-19 Score=153.00 Aligned_cols=123 Identities=17% Similarity=0.248 Sum_probs=93.7
Q ss_pred CCcEEEEEEEeeCC--EEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeecCC--C--C
Q 022283 139 NPKMVVGCLIEHDK--KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR--I--G 212 (299)
Q Consensus 139 ~p~~vV~~iv~~~~--kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~p~--~--~ 212 (299)
.+..++.+++.+++ +|||++|...+..|.|++|||++|+|||+++||+||++||||+++....+++.+.+.. . .
T Consensus 8 ~~~~~v~~vi~~~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 87 (161)
T 3exq_A 8 PVELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTCEWFDDDRQHR 87 (161)
T ss_dssp CEEEEEEEEEBCTTTCCEEEECCCCCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEEEEEEEEECSSCSSE
T ss_pred CceEEEEEEEEeCCCCEEEEEEccCCCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcEEEEEecccCCCCeE
Confidence 34566677776655 9999998865556789999999999999999999999999999999888888766533 2 3
Q ss_pred EEEEEEEEEecCCCCCCCCcceeeEEecCCCCCCCCCCCccHHHHHHHHHH
Q 022283 213 QIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLFID 263 (299)
Q Consensus 213 ~~~~~f~a~~~~~~~~~~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~ 263 (299)
..+++|.+....+++. ..|..+++|+++++++...+. +..+.+++.+++
T Consensus 88 ~~~~~~~~~~~~~~~~-~~e~~~~~W~~~~el~~~~~~-~~~~~~l~~~~~ 136 (161)
T 3exq_A 88 KLGLLYRASNFTGTLK-ASAEGQLSWLPITALTRENSA-ASLPEFLQVFTG 136 (161)
T ss_dssp EEEEEEEECCEESCCC-GGGTTTEEEECGGGCCTTTBC-TTHHHHHHHHTT
T ss_pred EEEEEEEEeccCCccC-CCccceEEEeeHHHhhhCccC-hHHHHHHHHHhh
Confidence 4556677766555433 356678999999999954443 455667777765
No 24
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A
Probab=99.79 E-value=7.1e-19 Score=147.95 Aligned_cols=106 Identities=25% Similarity=0.281 Sum_probs=79.5
Q ss_pred cEEEEEEEeeCCEEEEEEeecCC--CCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceee--------eecCC
Q 022283 141 KMVVGCLIEHDKKILLCKRKIEP--SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQ--------LDIPR 210 (299)
Q Consensus 141 ~~vV~~iv~~~~kILL~rr~~~p--~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~--------~~~p~ 210 (299)
..++++|+.++++|||++|.... ..|.|.+|||++|+|||+++||+||++||||+++....+... ..++.
T Consensus 28 ~~~~~~ii~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 107 (165)
T 3oga_A 28 RTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKTYAD 107 (165)
T ss_dssp EEEEEEEEEETTEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEEEEEEEEEEEEEC--
T ss_pred EEEEEEEEeCCCEEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccceeeeeeecceeeEecCC
Confidence 45666677888999999987542 368999999999999999999999999999999876665431 22333
Q ss_pred CC-----EEEEEEEEEecCCCCCCCCcceeeEEecCCCCCC
Q 022283 211 IG-----QIYIIFLAKLKRPHFSPGPESSECRLFALDEIPF 246 (299)
Q Consensus 211 ~~-----~~~~~f~a~~~~~~~~~~~E~~~~~W~~~deL~~ 246 (299)
.. ..+++|.+....+.+..++|..+++|+++++++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 148 (165)
T 3oga_A 108 GRQEEIYMIYLIFDCVSANRDICINDEFQDYAWVKPEELAL 148 (165)
T ss_dssp CCEEEEEEEEEEEEEEESCCCCCCCTTEEEEEEECGGGGGG
T ss_pred CCceeEEEEEEEEEeeccCCCccCCchheeeEEccHHHHhh
Confidence 32 2345677776666666668899999999999983
No 25
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure initiative II(PSI II), nysgxrc; 1.76A {Bacillus thuringiensis str} PDB: 3smd_A
Probab=99.79 E-value=2.9e-19 Score=149.08 Aligned_cols=109 Identities=27% Similarity=0.454 Sum_probs=78.9
Q ss_pred EEEEEEE-eeCCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeee-------cCCCCE
Q 022283 142 MVVGCLI-EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLD-------IPRIGQ 213 (299)
Q Consensus 142 ~vV~~iv-~~~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~-------~p~~~~ 213 (299)
.+|++++ +.+++|||++|. .|.|.+|||++|+|||+++||+||++||||+++....+++.+. ++....
T Consensus 22 ~~v~~ii~~~~~~vLL~~r~----~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (153)
T 3eds_A 22 PSVAAVIKNEQGEILFQYPG----GEYWSLPAGAIELGETPEEAVVREVWEETGLKVQVKKQKGVFGGKEYRYTYSNGDE 97 (153)
T ss_dssp EEEEEEEBCTTCCEEEECC-------CBBCSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEECSGGGEEECTTSCE
T ss_pred eeEEEEEEcCCCeEEEEEcC----CCcEECCccccCCCCCHHHHHHHHHHHHHCccceeeeEEEEecccceeeecCCCCe
Confidence 3444444 456899998876 6889999999999999999999999999999999888877552 233322
Q ss_pred ---EEEEEEEEecCCCCCC-CCcceeeEEecCCCCCCCCCCCccH
Q 022283 214 ---IYIIFLAKLKRPHFSP-GPESSECRLFALDEIPFDSLAFSSI 254 (299)
Q Consensus 214 ---~~~~f~a~~~~~~~~~-~~E~~~~~W~~~deL~~~~laf~s~ 254 (299)
.+++|.+....+++.. ++|..+++|+++++++...+++|..
T Consensus 98 ~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~el~~l~~~~p~~ 142 (153)
T 3eds_A 98 VEYIVVVFECEVTSGELRSIDGESLKLQYFSLSEKPPLALPYPDK 142 (153)
T ss_dssp EEEEEEEEEEEEEEECCC-------CEEEECGGGCCCBSSCCCGG
T ss_pred EEEEEEEEEEEecCCccccCCCcEEEEEEECHHHCchhcccCccc
Confidence 5677888877666555 4788899999999999666666653
No 26
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}
Probab=99.79 E-value=1.6e-19 Score=155.73 Aligned_cols=132 Identities=27% Similarity=0.335 Sum_probs=97.2
Q ss_pred eeecCCc-EEEEEEEee--------CCEEEEEEeec-------CCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCcee
Q 022283 135 IAYQNPK-MVVGCLIEH--------DKKILLCKRKI-------EPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVE 198 (299)
Q Consensus 135 ~~y~~p~-~vV~~iv~~--------~~kILL~rr~~-------~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~ 198 (299)
..|++|. ++|.++|.. +++|||++|.. .+..|.|.+|||+||+|||+++||+||++||||+++.
T Consensus 20 ~~~~~p~~~~v~~vv~~~~~~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~ 99 (187)
T 3i9x_A 20 KEFRTPDGYTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDI 99 (187)
T ss_dssp ---CCCSEEEEEEEEEEEEEETTEEEEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCSC
T ss_pred hHcCCcccceEEEEEEEEcCCCCCCCCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHCCCCc
Confidence 5678888 766665532 46899999943 3457999999999999999999999999999999999
Q ss_pred eccceeeeecCCC----CEEEEEEEEEecCCC---CCCCCcceeeEEecCCCCCCCCCCCccHHHHHHHHHHHHHc
Q 022283 199 VQSPFAQLDIPRI----GQIYIIFLAKLKRPH---FSPGPESSECRLFALDEIPFDSLAFSSISVTLQLFIDDIRM 267 (299)
Q Consensus 199 ~~~~~~~~~~p~~----~~~~~~f~a~~~~~~---~~~~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~~~~~ 267 (299)
.+.+++.+..+.. ....++|.+...... ....+|..+++|+++++++...+.+ ..+.+|..+++..+.
T Consensus 100 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~l~~-~~~~il~~a~~~l~~ 174 (187)
T 3i9x_A 100 PLIPFGVFDKPGRDPRGWIISRAFYAIVPPEALEKRAAGDDAAEIGLFPMTEALELPLAF-DHLDMLKKAFSAITE 174 (187)
T ss_dssp CCEEEEEECCTTSSTTSSEEEEEEEEECCHHHHHHHHHSTTTTTEEEEEHHHHTTSCBST-THHHHHHHHHHHHHH
T ss_pred ceEEEEEEcCCccCCCCCEEEEEEEEEEcCcccCCcCCCCceeEEEEEeHHHcccCCCCc-cHHHHHHHHHHHHHh
Confidence 8888888766442 245566666554322 2235788899999999998555655 457788877776543
No 27
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Probab=99.79 E-value=8.2e-20 Score=151.77 Aligned_cols=123 Identities=23% Similarity=0.246 Sum_probs=89.3
Q ss_pred cCCcEEEEEEEeeCCE----EEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeecCC---
Q 022283 138 QNPKMVVGCLIEHDKK----ILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR--- 210 (299)
Q Consensus 138 ~~p~~vV~~iv~~~~k----ILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~p~--- 210 (299)
+.+..++++++.++++ |||.+|...+..| |.+|||++|+|||+++||+||++||||+++....+++...++.
T Consensus 5 ~~~~~~~~~ii~~~~~~~~~vLl~~r~~~~~~g-w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~ 83 (155)
T 2b06_A 5 QLTILTNICLIEDLETQRVVMQYRAPENNRWSG-YAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLDTG 83 (155)
T ss_dssp GCEEEEEEEEEEETTTTEEEEEEEC-----CCE-EECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECTTS
T ss_pred cCcEEEEEEEEEECCCCeEEEEEEECCCCCCCC-EeccceecCCCCCHHHHHHHHHHHHhCccccCCcEEEEEeeccCCC
Confidence 4566777788877877 9999887654345 9999999999999999999999999999999888887666543
Q ss_pred CCEEEEEEEEEecCCCCCCCCcceeeEEecCCCCCCCCCCCccHHHHHHHHHH
Q 022283 211 IGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLFID 263 (299)
Q Consensus 211 ~~~~~~~f~a~~~~~~~~~~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~ 263 (299)
.+..+++|.+....+.+.. .|..+++|+++++++...+. +..+.+++.++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~-~e~~~~~W~~~~el~~~~~~-~~~~~~l~~~~~ 134 (155)
T 2b06_A 84 GRYIVICYKATEFSGTLQS-SEEGEVSWVQKDQIPNLNLA-YDMLPLMEMMEA 134 (155)
T ss_dssp CEEEEEEEEECEEEECCCC-BTTBEEEEEEGGGGGGSCBC-TTHHHHHHHHHC
T ss_pred ceEEEEEEEEEecCCCCCC-CcceeeEEeeHHHhhhCCCC-hhHHHHHHHHhC
Confidence 3355677777665544333 57789999999999954443 445556555553
No 28
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Probab=99.79 E-value=9.1e-20 Score=151.83 Aligned_cols=117 Identities=15% Similarity=0.234 Sum_probs=87.5
Q ss_pred CCcEEEEEEEee-CCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCcee--eccceeeeec--CCC--
Q 022283 139 NPKMVVGCLIEH-DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVE--VQSPFAQLDI--PRI-- 211 (299)
Q Consensus 139 ~p~~vV~~iv~~-~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~--~~~~~~~~~~--p~~-- 211 (299)
.|.++|.+++.+ +++|||++|...+..|.|.+|||++|+|||+++||+||++||||+++. ...+++...+ +..
T Consensus 16 ~~~~~v~~vi~~~~~~vLl~~r~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 95 (160)
T 1rya_A 16 TPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFS 95 (160)
T ss_dssp SCEEEEEEEEECTTSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBTT
T ss_pred CcEEEEEEEEEcCCCEEEEEeccCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCCCCCcccceEEEEEeEEEccccc
Confidence 455667666654 789999999876557899999999999999999999999999999963 5566665442 221
Q ss_pred ------CEEEEEEEEEecCCCCCC-CCcceeeEEecCCCCCCCCCCCccHH
Q 022283 212 ------GQIYIIFLAKLKRPHFSP-GPESSECRLFALDEIPFDSLAFSSIS 255 (299)
Q Consensus 212 ------~~~~~~f~a~~~~~~~~~-~~E~~~~~W~~~deL~~~~laf~s~~ 255 (299)
+..+++|.+....+++.. .+|..+++|+++++++...+..+..+
T Consensus 96 ~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~ 146 (160)
T 1rya_A 96 GTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVHANSR 146 (160)
T ss_dssp BSSSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHHHCTTBCHHHH
T ss_pred CCCcCcEEEEEEEEEEcCccccccCCCccceEEEecHHHHhhccccCHHHH
Confidence 345677888876555544 37889999999999984334344433
No 29
>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*
Probab=99.79 E-value=3.8e-20 Score=154.76 Aligned_cols=128 Identities=24% Similarity=0.282 Sum_probs=89.7
Q ss_pred cCCCCceeecCCcEEEEEEEeeCCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeec
Q 022283 129 CTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI 208 (299)
Q Consensus 129 C~~Cg~~~y~~p~~vV~~iv~~~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~ 208 (299)
+.+||.+.|.+.... .+.+++.++||++|+.. .|.|.+|||+||+|||+++||+||++||||+++.....+..+..
T Consensus 3 ~ra~G~iifr~~~~~--~~~n~~~e~LL~~r~~~--~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~ 78 (155)
T 3u53_A 3 LRACGLIIFRRCLIP--KVDNNAIEFLLLQASDG--IHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKR 78 (155)
T ss_dssp -CEEEEEEEEECCCS--SSSSCSEEEEEEEESSS--SCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEEEEEEEE
T ss_pred ceEeEEEEEcccccc--ceeCCCcEEEEEEecCC--CCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccceeeeeEee
Confidence 446777777542111 11234568999998754 47899999999999999999999999999999877665543321
Q ss_pred ------CCCCEEEEEEEEEecCCC--CCCCCcceeeEEecCCCCCCCCCCCccHHHHHHHH
Q 022283 209 ------PRIGQIYIIFLAKLKRPH--FSPGPESSECRLFALDEIPFDSLAFSSISVTLQLF 261 (299)
Q Consensus 209 ------p~~~~~~~~f~a~~~~~~--~~~~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~ 261 (299)
........+|.+.....+ +..++|+.+++|++++|+. ..+.++..+.+|++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~ea~-~~~~~~~~~~~L~~a 138 (155)
T 3u53_A 79 ELNYVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEAC-QLAQFKEMKAALQEG 138 (155)
T ss_dssp EEEEEETTEEEEEEEEEEEESCTTCCCCCCTTEEEEEEECHHHHH-HHHCSHHHHHHHHHH
T ss_pred eeecCCCcceeEEEEEEEEEeccCCccCCCcceeEEEEeEHHHHH-HHcCCHHHHHHHHHH
Confidence 222334456666665543 4556899999999999986 345677777776543
No 30
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*
Probab=99.79 E-value=1.2e-18 Score=143.60 Aligned_cols=121 Identities=20% Similarity=0.195 Sum_probs=92.6
Q ss_pred CcEEEEEEEeeCCEEEEEEeecC-CCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeecCCC--CEEEE
Q 022283 140 PKMVVGCLIEHDKKILLCKRKIE-PSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI--GQIYI 216 (299)
Q Consensus 140 p~~vV~~iv~~~~kILL~rr~~~-p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~p~~--~~~~~ 216 (299)
+..++++|+.++++|||++|... +..|.|.+|||++|+||++++||.||++||||+++....+++...+.+. ...++
T Consensus 21 ~~~~~~~i~~~~~~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 100 (153)
T 3ees_A 21 WIPVVAGFLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGELKLACTHSYGDVGILIL 100 (153)
T ss_dssp EEEEEEEEEEETTEEEEEECCTTSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCEEEEEEEEETTEEEEEE
T ss_pred eEEEEEEEEEECCEEEEEEeCCCCCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCceEEEEEEecCCCeEEEE
Confidence 44666677788899999999865 3369999999999999999999999999999999998888876555333 34556
Q ss_pred EEEEEecCCCCCCCCcceeeEEecCCCCCCCCCCC-ccHHHHHHHHHH
Q 022283 217 IFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAF-SSISVTLQLFID 263 (299)
Q Consensus 217 ~f~a~~~~~~~~~~~E~~~~~W~~~deL~~~~laf-~s~~~~l~~~l~ 263 (299)
+|.+....+.+ ..+|..+++|+++++++. +.+ +..+.+++.+.+
T Consensus 101 ~~~~~~~~~~~-~~~e~~~~~W~~~~el~~--~~~~~~~~~~l~~~~~ 145 (153)
T 3ees_A 101 FYEILYWKGEP-RAKHHMMLEWIHPEELKH--RNIPEANRKILHKIYK 145 (153)
T ss_dssp EEEECEEESCC-CCSSSSEEEEECGGGGGG--SCCCHHHHTTHHHHHH
T ss_pred EEEEEECCCCc-CCCccceEEEecHHHhhh--CCCCcchHHHHHHHHH
Confidence 77777665542 246788999999999984 444 344555555554
No 31
>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}
Probab=99.79 E-value=1.6e-19 Score=169.91 Aligned_cols=126 Identities=13% Similarity=0.223 Sum_probs=104.6
Q ss_pred CcEEEEEEEeeCCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHh-CCceeeccceeeeecCCCCEEEEEE
Q 022283 140 PKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEA-RADVEVQSPFAQLDIPRIGQIYIIF 218 (299)
Q Consensus 140 p~~vV~~iv~~~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEt-Gl~v~~~~~~~~~~~p~~~~~~~~f 218 (299)
|.++|++|+.++|+|||+ +..| |.||||.+ ||+..++|+||++||+ |++++...+++.++.+..+...++|
T Consensus 182 p~~~vgaii~~~g~vLL~-----~~~G-W~LPG~~~--~~~~~~~a~RE~~EEttGl~v~~~~L~~v~~~~~~~~~~i~f 253 (321)
T 3rh7_A 182 GEIRLGAVLEQQGAVFLA-----GNET-LSLPNCTV--EGGDPARTLAAYLEQLTGLNVTIGFLYSVYEDKSDGRQNIVY 253 (321)
T ss_dssp SCEEEEEEEESSSCEEEB-----CSSE-EBCCEEEE--SSSCHHHHHHHHHHHHHSSCEEEEEEEEEEECTTTCCEEEEE
T ss_pred CcceEEEEEEECCEEEEe-----eCCC-ccCCcccC--CCChhHHHHHHHHHHhcCCEEeeceEEEEEEcCCCceEEEEE
Confidence 678999999999999999 2468 99998755 4555569999999997 9999999999999988877888999
Q ss_pred EEEecCCCCCCCCcceeeEEecCCCCCCCCCCCccHHHHHHHHHHHHHcCCceeEeecccC
Q 022283 219 LAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLFIDDIRMGKLNFHYGTINK 279 (299)
Q Consensus 219 ~a~~~~~~~~~~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~~~~~g~~~~~~~~~~~ 279 (299)
.|+..+++ ..+++||+++|||+..+.+++.+.+|++|+++.+.|+|++|+|+...
T Consensus 254 ~~~~~~g~------~~e~~~f~~~elp~~~~~~~~~~~~L~~y~~e~~~g~f~i~~g~~~~ 308 (321)
T 3rh7_A 254 HALASDGA------PRQGRFLRPAELAAAKFSSSATADIINRFVLESSIGNFGIYFGDETG 308 (321)
T ss_dssp EEEECSSC------CSSSEEECHHHHTTCEESSHHHHHHHHHHHHTTSCSSCC--------
T ss_pred EEEeCCCC------eeeeEEECHHHCCCcccCCHHHHHHHHHHHHHhhcCCCCceecCCCC
Confidence 99987664 26789999999999999999999999999999999999999997663
No 32
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*
Probab=99.79 E-value=2.2e-19 Score=162.14 Aligned_cols=138 Identities=18% Similarity=0.275 Sum_probs=100.3
Q ss_pred ecCCCCceeecCCcEEEEEEEe--eC--CEEEEEEeecCCCCCceeeceEEeeC--CCCHHHHHHHHHHHHhCCceeecc
Q 022283 128 ICTVCGKIAYQNPKMVVGCLIE--HD--KKILLCKRKIEPSYGLWTLPAGYMEI--GESAAEGAIRETWEEARADVEVQS 201 (299)
Q Consensus 128 ~C~~Cg~~~y~~p~~vV~~iv~--~~--~kILL~rr~~~p~~g~w~lPgG~VE~--GEs~eeAa~REv~EEtGl~v~~~~ 201 (299)
.+..+....|++|.+.|.++|. ++ ++|||++|...+..|.|.+|||+||+ |||+++||+||++||||+++..+.
T Consensus 9 ~l~~~~~~~~~~p~v~v~~vi~~~~~~~~~vLLv~R~~~~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~ 88 (240)
T 3gz5_A 9 YLANYDPKAFKAQLLTVDAVLFTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIE 88 (240)
T ss_dssp ------------CEEEEEEEEEEEETTEEEEEEEECCSSSSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEE
T ss_pred HHhhcCccccCCCccEEEEEEEEEeCCCcEEEEEECcCCCCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCcee
Confidence 3445666788899888877775 33 49999999977767999999999999 999999999999999999998888
Q ss_pred ceeeeecCC----CCEEEEEEEEEecCCCCC-CCCcceeeEEecCCCCCCCCCCCccHHHHHHHHHHHHH
Q 022283 202 PFAQLDIPR----IGQIYIIFLAKLKRPHFS-PGPESSECRLFALDEIPFDSLAFSSISVTLQLFIDDIR 266 (299)
Q Consensus 202 ~~~~~~~p~----~~~~~~~f~a~~~~~~~~-~~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~~~~ 266 (299)
.++.+..+. ...+.++|.+.+..+... ..+|..+++|+++++++...++++. ..++...++..+
T Consensus 89 ~l~~~~~~~r~~~~~~~~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el~~~~l~~dh-~~il~~a~~rlr 157 (240)
T 3gz5_A 89 QLCTVGNNSRDARGWSVTVCYTALMSYQACQIQIASVSDVKWWPLADVLQMPLAFDH-LQLIEQARERLT 157 (240)
T ss_dssp EEEEEEESSSSTTSCEEEEEEEEECCHHHHHHHHTTCTTEEEEEHHHHTTSCCSTTH-HHHHHHHHHHHH
T ss_pred eEEEeCCCccCCCceEEEEEEEEEecccccCCCCCcccceEEecHHHcccCCcchhH-HHHHHHHHHHHH
Confidence 887776533 346677888877554332 2367889999999999866787765 667777766544
No 33
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6
Probab=99.78 E-value=7.4e-19 Score=161.50 Aligned_cols=139 Identities=23% Similarity=0.366 Sum_probs=104.5
Q ss_pred ecCCCCceeecCCcEEEEEEEe--eC----CEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeecc
Q 022283 128 ICTVCGKIAYQNPKMVVGCLIE--HD----KKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQS 201 (299)
Q Consensus 128 ~C~~Cg~~~y~~p~~vV~~iv~--~~----~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~ 201 (299)
.+..|....|++|.++|.+||. ++ ++|||++|...+..|.|.+|||+||+|||+++||+||++||||+++....
T Consensus 26 ~~~~~~~~~~~~p~v~v~~vv~~~~~~~~~~~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~ 105 (273)
T 2fml_A 26 WYHQQELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQEN 105 (273)
T ss_dssp HHTTSCCCCCCCCEEEEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGG
T ss_pred hhhhhhcccCCCCceEEEEEEEEEcCCCCCcEEEEEEccCCCCCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCc
Confidence 3456777789999988887764 23 38999999887767999999999999999999999999999998765433
Q ss_pred --ceeeeecCC----CCEEEEEEEEEecCCCCCCCCcceeeEEecCCC-----------------------CCCCCCCCc
Q 022283 202 --PFAQLDIPR----IGQIYIIFLAKLKRPHFSPGPESSECRLFALDE-----------------------IPFDSLAFS 252 (299)
Q Consensus 202 --~~~~~~~p~----~~~~~~~f~a~~~~~~~~~~~E~~~~~W~~~de-----------------------L~~~~laf~ 252 (299)
.++.+..+. .+...++|.+.+..+.....+|..+++|+++++ ++...++|+
T Consensus 106 l~~l~~~~~~~r~~~~~~~~~~y~a~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~e~~~l~~~~~~~~~~~~~~Lafd 185 (273)
T 2fml_A 106 IEQLHSFSRPDRDPRGWVVTVSYLAFIGEEPLIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKDTLAFD 185 (273)
T ss_dssp EEEEEEECCTTSSTTSSEEEEEEEEECCCCCCCCCTTEEEEEEEEEEEETTEEEEEETTEEEEEETTTCCBCSSSCCSTT
T ss_pred EEEEEEEcCCCCCCCceEEEEEEEEEeCCCCCCCCcceeeEEEEEhhHhhhhhccccchhhhccccccccccCCCccccc
Confidence 344443332 235678888887655444457889999999996 333477777
Q ss_pred cHHHHHHHHHHHHHc
Q 022283 253 SISVTLQLFIDDIRM 267 (299)
Q Consensus 253 s~~~~l~~~l~~~~~ 267 (299)
. ..+|..+++..+.
T Consensus 186 H-~~Il~~al~rlr~ 199 (273)
T 2fml_A 186 H-SEIIIKAFNRVVD 199 (273)
T ss_dssp H-HHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHH
Confidence 6 5577888776553
No 34
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}
Probab=99.77 E-value=4.3e-19 Score=153.93 Aligned_cols=119 Identities=22% Similarity=0.316 Sum_probs=89.4
Q ss_pred cEEEEEEEeeCCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeecCC--CC-----E
Q 022283 141 KMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR--IG-----Q 213 (299)
Q Consensus 141 ~~vV~~iv~~~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~p~--~~-----~ 213 (299)
..++++++.++++|||++|. ..|.|.+|||++|+|||+++||+||++||||+++....+++.+.+.+ .. .
T Consensus 4 ~~v~~~vi~~~~~vLL~~r~---~~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (188)
T 3fk9_A 4 QRVTNCIVVDHDQVLLLQKP---RRGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMVIFDEGKIVSEW 80 (188)
T ss_dssp CEEEEEEEEETTEEEEEECT---TTCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEEEEEEEEEEEETTEEEEEE
T ss_pred eEEEEEEEEECCEEEEEEeC---CCCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceEEEEEEEEecCCCcceEEE
Confidence 45666777788999999975 36899999999999999999999999999999998888777665432 11 1
Q ss_pred EEEEEEEEecCCCCCCCCcceeeEEecCCCCCCCCCCCccHHHHHHHHHH
Q 022283 214 IYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLFID 263 (299)
Q Consensus 214 ~~~~f~a~~~~~~~~~~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~ 263 (299)
.+++|.+....+++....|..+++|+++++++...+. +..+.++..+++
T Consensus 81 ~~~~f~a~~~~~~~~~~~e~~~~~W~~~~el~~~~l~-~~~~~~l~~~l~ 129 (188)
T 3fk9_A 81 MLFTFKATEHEGEMLKQSPEGKLEWKKKDEVLELPMA-AGDKWIFKHVLH 129 (188)
T ss_dssp EEEEEEESCEESCCCSEETTEEEEEEEGGGGGGSCCC-HHHHHHHHHHTT
T ss_pred EEEEEEEECCCCCCcCCCCCEeEEEEEHHHhhhCCCC-HHHHHHHHHHHc
Confidence 5677888766665555555578999999999844443 444555555543
No 35
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A
Probab=99.77 E-value=5e-19 Score=145.14 Aligned_cols=124 Identities=19% Similarity=0.218 Sum_probs=88.5
Q ss_pred eecCCcEEEEEEEee-CCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeec--cceeeee-----
Q 022283 136 AYQNPKMVVGCLIEH-DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQ--SPFAQLD----- 207 (299)
Q Consensus 136 ~y~~p~~vV~~iv~~-~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~--~~~~~~~----- 207 (299)
.|+.+..+.+++++. ++++||++|... .|.|.+|||++|+|||+++||+||++||||+++... .+++...
T Consensus 5 ~~~~~~~v~~~i~~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~ 82 (150)
T 2o1c_A 5 VYKRPVSILVVIYAQDTKRVLMLQRRDD--PDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFE 82 (150)
T ss_dssp CCBCSEEEEEEEEETTTCEEEEEECSSS--TTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCEEEEEEEEEEE
T ss_pred cccCceEEEEEEEeCCCCEEEEEEecCC--CCceECCccccCCCCCHHHHHHHHHHHHhCCCccccceeEEeeeceeeee
Confidence 366665555555555 489999998754 589999999999999999999999999999998763 3333211
Q ss_pred --------cC--CCCEEEEEEEEEecCCCCCCCCcceeeEEecCCCCCCCCCCCccHHHHHHHHH
Q 022283 208 --------IP--RIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLFI 262 (299)
Q Consensus 208 --------~p--~~~~~~~~f~a~~~~~~~~~~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l 262 (299)
++ ..+..+++|.+....+.....+|..+++|+++++++.. ...+..+.+++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~-~~~~~~~~~l~~~~ 146 (150)
T 2o1c_A 83 IFSHLRHRYAPGVTRNTESWFCLALPHERQIVFTEHLAYKWLDAPAAAAL-TKSWSNRQAIEQFV 146 (150)
T ss_dssp CCGGGGGGBCTTCCEEEEEEEEEEESSCCCCCCSSSSCEEEEEHHHHHHH-CSCHHHHHHHHHHT
T ss_pred eecccccccCCCCcceEEEEEEEEcCCCCCcChhHhhccEeecHHHHHhh-hcCHHHHHHHHHHH
Confidence 12 12356678888887654433478899999999999832 23445566666554
No 36
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0
Probab=99.77 E-value=9.9e-19 Score=143.07 Aligned_cols=119 Identities=18% Similarity=0.255 Sum_probs=86.1
Q ss_pred EEEEEeeCCEEEEEEeecCC-CCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeecccee--eeec--CCCCEEEEEE
Q 022283 144 VGCLIEHDKKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFA--QLDI--PRIGQIYIIF 218 (299)
Q Consensus 144 V~~iv~~~~kILL~rr~~~p-~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~--~~~~--p~~~~~~~~f 218 (299)
++++++.+++|||++|.... ..|.|.+|||++|+||++++||.||++||||+++....+.. ...+ +..+..+.+|
T Consensus 12 ~~vi~~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (144)
T 3r03_A 12 AAALIDPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPLAFASHSYDTFHLLMPLY 91 (144)
T ss_dssp EEEEBCTTSCEEEEECCTTSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSSSEEEEEEE
T ss_pred EEEEEcCCCEEEEEEeCCCCCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccceEEEEeeeccCCCeEEEEEEE
Confidence 33444557899999998543 36899999999999999999999999999999998775433 2322 3344566778
Q ss_pred EEEecCCCCCCCCcceeeEEecCCCCCCCCCCCccHHHHHHHHHHH
Q 022283 219 LAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLFIDD 264 (299)
Q Consensus 219 ~a~~~~~~~~~~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~~ 264 (299)
.+....+.+. ..|..+++|+++++++...+. +..+.+++.+.+.
T Consensus 92 ~~~~~~~~~~-~~e~~~~~W~~~~el~~~~~~-~~~~~~l~~~~~~ 135 (144)
T 3r03_A 92 ACRSWRGRAT-AREGQTLAWVRAERLREYPMP-PADLPLIPILQDW 135 (144)
T ss_dssp EECCCBSCCC-CCSSCEEEEECGGGGGGSCCC-TTTTTHHHHHHHH
T ss_pred EEEecCCccC-CCCcceEEEEeHHHhccCCCC-cchHHHHHHHhCc
Confidence 8876655433 467789999999999843332 4445566655543
No 37
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*
Probab=99.77 E-value=1.6e-18 Score=140.77 Aligned_cols=111 Identities=24% Similarity=0.260 Sum_probs=81.5
Q ss_pred CCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeecc----ceeeeec--CCCCEEEEEEEEEecC
Q 022283 151 DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQS----PFAQLDI--PRIGQIYIIFLAKLKR 224 (299)
Q Consensus 151 ~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~----~~~~~~~--p~~~~~~~~f~a~~~~ 224 (299)
+++|||++|+. .+|.|.+|||++|+|||+++||+||++||||+.+..+. +.+...+ +..+..+++|.+....
T Consensus 17 ~~~vLl~~r~~--~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 94 (138)
T 1ktg_A 17 KIEFLLLQASY--PPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGKPKSVKYWLAKLNN 94 (138)
T ss_dssp EEEEEEEEESS--TTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETTEEEEEEEEEEEECS
T ss_pred CcEEEEEEccC--CCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccccceEEEEeCCCceEEEEEEEEecC
Confidence 36899999873 35799999999999999999999999999999554433 3333333 3334566788888876
Q ss_pred C-CCCCCCcceeeEEecCCCCCCCCCCCccHHHHHHHHHHH
Q 022283 225 P-HFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLFIDD 264 (299)
Q Consensus 225 ~-~~~~~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~~ 264 (299)
+ ....++|..+++|+++++++. .+.++..+.+++.+.+.
T Consensus 95 ~~~~~~~~e~~~~~W~~~~el~~-~~~~~~~~~~l~~~~~~ 134 (138)
T 1ktg_A 95 PDDVQLSHEHQNWKWCELEDAIK-IADYAEMGSLLRKFSAF 134 (138)
T ss_dssp CCCCCCCTTEEEEEEECHHHHHH-HHCCHHHHHHHHHHHHH
T ss_pred CcccCCCchhcEeEeccHHHHHH-hhccchHHHHHHHHHHH
Confidence 3 333458889999999999983 33456666677666554
No 38
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Probab=99.77 E-value=1.1e-18 Score=144.10 Aligned_cols=115 Identities=21% Similarity=0.189 Sum_probs=86.5
Q ss_pred eCCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeecc--ceeee-----ecC--C-CCEEEEEEE
Q 022283 150 HDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQS--PFAQL-----DIP--R-IGQIYIIFL 219 (299)
Q Consensus 150 ~~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~--~~~~~-----~~p--~-~~~~~~~f~ 219 (299)
.+++|||++|.. .|.|.+|||++|+|||+++||+||++||||+++.... +.... .+. . .....++|.
T Consensus 18 ~~~~vLl~~r~~---~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 94 (149)
T 3son_A 18 ANYQFGVLHRTD---ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASIPNFHFSFNKPYVVPEYCFA 94 (149)
T ss_dssp SSEEEEEEEESS---SSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGGTCSSSCSEEEEEEEE
T ss_pred CCeEEEEEEEcC---CCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccceEEEEeeecccceeeccCCceEeEEEEEE
Confidence 457899999874 4899999999999999999999999999999987641 11111 122 1 224457788
Q ss_pred EEec--CCCCCCCCcceeeEEecCCCCCCCCCCCccHHHHHHHHHHHHHcC
Q 022283 220 AKLK--RPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLFIDDIRMG 268 (299)
Q Consensus 220 a~~~--~~~~~~~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~~~~~g 268 (299)
+... .+++.+++|..+++|++++++. ..+.++..+.++..+.+.....
T Consensus 95 ~~~~~~~~~~~~~~E~~~~~W~~~~el~-~~~~~~~~~~~l~~~~~~l~~~ 144 (149)
T 3son_A 95 IDLTSCSYQVTLSLEHSELRWVSYESAI-QLLEWDSNKTALYELNERLKNN 144 (149)
T ss_dssp EECTTTGGGCCCCTTEEEEEEECHHHHH-HHCCCHHHHHHHHHHHHHHHTT
T ss_pred EEcCCCCCcccCCCceeeEEEeCHHHHH-HHhcCHHHHHHHHHHHHHHhhc
Confidence 8887 3445556899999999999998 3445677888888877765544
No 39
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*
Probab=99.76 E-value=6.3e-18 Score=140.50 Aligned_cols=106 Identities=25% Similarity=0.388 Sum_probs=83.9
Q ss_pred CcEEEEEEEe-eCCEEEEEEeecC---C-CCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeec--CC-C
Q 022283 140 PKMVVGCLIE-HDKKILLCKRKIE---P-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI--PR-I 211 (299)
Q Consensus 140 p~~vV~~iv~-~~~kILL~rr~~~---p-~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~--p~-~ 211 (299)
...++.+++. .+++|||++|.+. + ..|.|.+|||++|+|||+++||+||++||||+++....+++.+.. +. .
T Consensus 12 ~~~~~~~vi~~~~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~~ 91 (159)
T 1sjy_A 12 ELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRFPDGV 91 (159)
T ss_dssp CEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEECTTSC
T ss_pred EEEeEEEEEEeCCCCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeEEEEEEecccCCCc
Confidence 3455555554 5789999999852 2 358999999999999999999999999999999998888877664 33 2
Q ss_pred CEEEEEEEEEecCCC-CCC--CCcceeeEEecCCCCC
Q 022283 212 GQIYIIFLAKLKRPH-FSP--GPESSECRLFALDEIP 245 (299)
Q Consensus 212 ~~~~~~f~a~~~~~~-~~~--~~E~~~~~W~~~deL~ 245 (299)
+..+++|.+....+. +.+ ++|..++.|++++++.
T Consensus 92 ~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~ 128 (159)
T 1sjy_A 92 LILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFA 128 (159)
T ss_dssp EEEEEEEEEEECSSCCCCCCCCSSEEEEEEECHHHHH
T ss_pred eEEEEEEEEEccCCCccccCCCCceeEEEEecHHHHH
Confidence 356678888887665 554 4788999999999986
No 40
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Probab=99.76 E-value=7.9e-19 Score=140.62 Aligned_cols=116 Identities=18% Similarity=0.241 Sum_probs=87.2
Q ss_pred EEEEEEeeCCEEEEEEeecC-CCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeecCCCC--EEEEEEE
Q 022283 143 VVGCLIEHDKKILLCKRKIE-PSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIG--QIYIIFL 219 (299)
Q Consensus 143 vV~~iv~~~~kILL~rr~~~-p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~p~~~--~~~~~f~ 219 (299)
++++|++++++|||++|... +..|.|.+|||++|+|||+++||.||++||||+++....+++...+.+.+ ..+.+|.
T Consensus 7 ~~~ii~~~~~~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (129)
T 1mut_A 7 AVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLWFWL 86 (129)
T ss_dssp CCEECEETTTEEEEEECSSCCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECCCCCCBCCCSSCEEECCCEE
T ss_pred EEEEEEecCCEEEEEEeCCCCCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccceEEEEEEEecCCceEEEEEEE
Confidence 44555677899999998765 23699999999999999999999999999999999888777766554444 3345688
Q ss_pred EEecCCCCCCCCcceeeEEecCCCCCCCCCCCc-cHHHHHHHH
Q 022283 220 AKLKRPHFSPGPESSECRLFALDEIPFDSLAFS-SISVTLQLF 261 (299)
Q Consensus 220 a~~~~~~~~~~~E~~~~~W~~~deL~~~~laf~-s~~~~l~~~ 261 (299)
+....+.+. .+|..+++|++++++.. +.++ ..+.+++.+
T Consensus 87 ~~~~~~~~~-~~e~~~~~W~~~~el~~--~~~~~~~~~~l~~l 126 (129)
T 1mut_A 87 VERWEGEPW-GKEGQPGEWMSLVGLNA--DDFPPANEPVIAKL 126 (129)
T ss_dssp EEECSSCCC-CCSSCCCEEEESSSCCT--TTSCTTCHHHHHHH
T ss_pred EEccCCccC-CcccceeEEeCHHHccc--ccCCchhHHHHHHH
Confidence 877655432 46778899999999984 4444 335555443
No 41
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}
Probab=99.76 E-value=5.8e-18 Score=141.34 Aligned_cols=119 Identities=19% Similarity=0.319 Sum_probs=86.4
Q ss_pred EEEEEEeeCCEEEEEEeecCC-CCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccc--eeeeec--CCCCEEEEE
Q 022283 143 VVGCLIEHDKKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSP--FAQLDI--PRIGQIYII 217 (299)
Q Consensus 143 vV~~iv~~~~kILL~rr~~~p-~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~--~~~~~~--p~~~~~~~~ 217 (299)
+++++++++++|||++|.... ..|.|.+|||++|+||++++||+||++||||+++....+ ++...+ +..+..+.+
T Consensus 32 ~~~~i~~~~~~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (158)
T 3hhj_A 32 VACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPLTFASHGYETFHLLMPL 111 (158)
T ss_dssp EEEEEBCTTSEEEEEECCCTTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSSCEEEEEE
T ss_pred EEEEEEeCCCEEEEEEeCCCCCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceEEEEEEEeeccCCcEEEEEE
Confidence 344455667899999988542 368999999999999999999999999999999988765 333333 334455667
Q ss_pred EEEEecCCCCCCCCcceeeEEecCCCCCCCCCCCccHHHHHHHHHH
Q 022283 218 FLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLFID 263 (299)
Q Consensus 218 f~a~~~~~~~~~~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~ 263 (299)
|.+....+.+. ..|..+++|++++++....+ .+..+.+++.+.+
T Consensus 112 ~~~~~~~~~~~-~~e~~~~~W~~~~el~~~~~-~~~~~~il~~~~~ 155 (158)
T 3hhj_A 112 YFCSHYKGVAQ-GREGQNLKWIFINDLDKYPM-PEADKPLVQVLKN 155 (158)
T ss_dssp EEESCCBSCCC-CTTSCEEEEEEGGGGGGSCC-CTTTHHHHHHHHH
T ss_pred EEEEECCCccC-CccccceEEEcHHHHhhCCC-CcchHHHHHHHHH
Confidence 77776555332 36788999999999984333 3444666665543
No 42
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Probab=99.75 E-value=1.5e-18 Score=142.46 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=83.8
Q ss_pred EEEEee-CCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeee---cC-CC----CEEE
Q 022283 145 GCLIEH-DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLD---IP-RI----GQIY 215 (299)
Q Consensus 145 ~~iv~~-~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~---~p-~~----~~~~ 215 (299)
++|+++ +++|||++|. .|.|.+|||++|+|||+++||+||++||||+++....+++.+. ++ .. +..+
T Consensus 23 ~vi~~~~~~~vLl~~r~----~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (148)
T 2azw_A 23 IIVSKPENNTMVLVQAP----NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHRQTAYYNPG 98 (148)
T ss_dssp EECEEGGGTEEEEEECT----TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTTTEEEEEEE
T ss_pred EEEECCCCCeEEEEEcC----CCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeEEEEEEEEEcCCCCCcceEEEE
Confidence 334444 5899999973 4899999999999999999999999999999998888776543 21 11 1345
Q ss_pred EEEEEEecCCCCCCCCcceeeEEecCCCCCCCCCCCccHHHHHHHHH
Q 022283 216 IIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLFI 262 (299)
Q Consensus 216 ~~f~a~~~~~~~~~~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l 262 (299)
++|.+....+.....+|..+++|+++++++. .+..+..+.++++++
T Consensus 99 ~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~-~~~~~~~~~~l~~~~ 144 (148)
T 2azw_A 99 YFYVANTWRQLSEPLERTNTLHWVAPEEAVR-LLKRGSHRWAVEKWL 144 (148)
T ss_dssp EEEEEEEEEECSSCC-CCSEEEEECHHHHHH-HBSCHHHHHHHHHHH
T ss_pred EEEEEEcCcCCcCCCCceeeEEEeeHHHHHh-hhcchhHHHHHHHHH
Confidence 6788877655444457788999999999982 344566677777766
No 43
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A
Probab=99.75 E-value=4.9e-18 Score=142.02 Aligned_cols=115 Identities=23% Similarity=0.286 Sum_probs=84.4
Q ss_pred EEEEEEEeeCCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeee---------------
Q 022283 142 MVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQL--------------- 206 (299)
Q Consensus 142 ~vV~~iv~~~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~--------------- 206 (299)
.++++++.++++|||++|.. .|.|.+|||++|+|||+++||+||++||||+++.....++..
T Consensus 2 ~~~~~vi~~~~~vLL~~r~~---~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (156)
T 1k2e_A 2 IVTSGVLVENGKVLLVKHKR---LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPLVIL 78 (156)
T ss_dssp EEEEEECEETTEEEEEECTT---TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCCCCCBSSSEEECCCCSEEE
T ss_pred eEEEEEEEECCEEEEEEEcC---CCcEECCeeecCCCCCHHHHHHHHHHHHHCCcceeccceeeecccccccccccceee
Confidence 34556666699999999863 588999999999999999999999999999999877654311
Q ss_pred ----ecCCCC--EEEEEEEEEecCCCCCCCCcceeeEEecCCCCCCCCCCCccHHHHHHHHHHHHH
Q 022283 207 ----DIPRIG--QIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLFIDDIR 266 (299)
Q Consensus 207 ----~~p~~~--~~~~~f~a~~~~~~~~~~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~~~~ 266 (299)
.++... ...++|.+...+ .|..+++|+++++++...+ ++..+.+++.+++...
T Consensus 79 ~~~~~~~~~~~~~~~~~f~~~~~~------~e~~~~~W~~~~el~~~~~-~~~~~~~l~~~~~~l~ 137 (156)
T 1k2e_A 79 EEVVKYPEETHIHFDLIYLVKRVG------GDLKNGEWIDVREIDRIET-FPNVRKVVSLALSTLY 137 (156)
T ss_dssp EEEEECSSCEEEEEEEEEEEEEEE------ECCCSCEEEEGGGGGGSCB-STTHHHHHHHHHHHHH
T ss_pred eeeecCCCCceEEEEEEEEEEecC------CcEeeeEEeCHHHHhcCCC-ChHHHHHHHHHHHHHH
Confidence 112211 123456666433 3567899999999985443 5777888888877544
No 44
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}
Probab=99.75 E-value=2.4e-18 Score=142.44 Aligned_cols=107 Identities=21% Similarity=0.204 Sum_probs=75.3
Q ss_pred CCcEEEEEEEeeCCEEEEEEeecCCC-CCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeec-CC-CCEEE
Q 022283 139 NPKMVVGCLIEHDKKILLCKRKIEPS-YGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI-PR-IGQIY 215 (299)
Q Consensus 139 ~p~~vV~~iv~~~~kILL~rr~~~p~-~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~-p~-~~~~~ 215 (299)
.|..+++++++.+++|||+++.+.+. .+.|++|||++|+|||+++||+||++||||+++..+.+++.+.. +. .+..+
T Consensus 4 ~~~~v~vi~~~~~~~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~ 83 (145)
T 2w4e_A 4 GPRAVFILPVTAQGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGFYPQPSISGVVF 83 (145)
T ss_dssp CCEEEEEEEEETTSEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEECCCBBSCTTTCCCEE
T ss_pred eCCEEEEEEEcCCCEEEEEEEEecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEEEEecCcCCCCccCceE
Confidence 34455555566788999988765542 45899999999999999999999999999999987776665322 22 23456
Q ss_pred EEEEEEec-CCCCCC-CCcceeeEEecCCCCC
Q 022283 216 IIFLAKLK-RPHFSP-GPESSECRLFALDEIP 245 (299)
Q Consensus 216 ~~f~a~~~-~~~~~~-~~E~~~~~W~~~deL~ 245 (299)
++|.+... .+.... .+|..+++|+++++++
T Consensus 84 ~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~ 115 (145)
T 2w4e_A 84 YPLLALGVTLGAAQLEDTETIERVVLPLAEVY 115 (145)
T ss_dssp EEEEEEEEEEC--------CEEEEEEEHHHHH
T ss_pred EEEEEEecccCCCCCCCCCeEEEEEEeHHHHH
Confidence 67777633 233333 3788899999999986
No 45
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=99.74 E-value=5.1e-18 Score=144.61 Aligned_cols=122 Identities=19% Similarity=0.128 Sum_probs=89.3
Q ss_pred EEEEE-EeeCCEEEEEEeecCCC--CCceee-ceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeecCCC--CEEEE
Q 022283 143 VVGCL-IEHDKKILLCKRKIEPS--YGLWTL-PAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI--GQIYI 216 (299)
Q Consensus 143 vV~~i-v~~~~kILL~rr~~~p~--~g~w~l-PgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~p~~--~~~~~ 216 (299)
+++++ ++.+++|||.+|..... +|.|.+ |||++|+|||+++||+||++||||+++..+..++.+.+... +..++
T Consensus 39 ~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 118 (180)
T 2fkb_A 39 ATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGA 118 (180)
T ss_dssp EEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEETTEEEEEE
T ss_pred EEEEEEECCCCEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEEEEEEEecCCCceEEEE
Confidence 44444 45578999998875422 689999 99999999999999999999999999887777776554333 34556
Q ss_pred EEEEEecCCCCCC-CCcceeeEEecCCCCCCC--CCCCccHHHHHHHHHHHHH
Q 022283 217 IFLAKLKRPHFSP-GPESSECRLFALDEIPFD--SLAFSSISVTLQLFIDDIR 266 (299)
Q Consensus 217 ~f~a~~~~~~~~~-~~E~~~~~W~~~deL~~~--~laf~s~~~~l~~~l~~~~ 266 (299)
+|.+.. .+++.. .+|..+++|+++++++.. .+. +....++..|+....
T Consensus 119 ~f~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~~~~~-~~~~~~l~~~~~~~~ 169 (180)
T 2fkb_A 119 LFSCVS-HGPFALQEDEVSEVCWLTPEEITARCDEFT-PDSLKALALWMKRNA 169 (180)
T ss_dssp EEEEEC-CCCCCCCTTTEEEEEEECHHHHHTTGGGBC-HHHHHHHHHHHHHC-
T ss_pred EEEEec-CCCcCCChhHhheEEEecHHHHHHHHHHhC-CcHHHHHHHHHHhhc
Confidence 777773 444444 478899999999999843 222 556777777776544
No 46
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}
Probab=99.74 E-value=3.4e-18 Score=141.99 Aligned_cols=105 Identities=20% Similarity=0.257 Sum_probs=80.3
Q ss_pred cEEEEEEEeeCCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeec--CCCC----EE
Q 022283 141 KMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI--PRIG----QI 214 (299)
Q Consensus 141 ~~vV~~iv~~~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~--p~~~----~~ 214 (299)
...+.+++.++++|||++| .|.|.+|||++|+||++++||+||++||||+++....+++.... +... ..
T Consensus 19 ~~~~~~ii~~~~~vLl~~r-----~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (154)
T 2pqv_A 19 GVRATALIVQNHKLLVTKD-----KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVDGVSYHNI 93 (154)
T ss_dssp EEEEEECCEETTEEEEEEE-----TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEETTEEEEEE
T ss_pred eEEEEEEEEECCEEEEEec-----CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceEEEEEeeeecCCCCcceEE
Confidence 3456666677899999998 47899999999999999999999999999999988777665432 2122 23
Q ss_pred EEEEEEEecCCCCC---CCCcceeeEEecCCCCCCCCCC
Q 022283 215 YIIFLAKLKRPHFS---PGPESSECRLFALDEIPFDSLA 250 (299)
Q Consensus 215 ~~~f~a~~~~~~~~---~~~E~~~~~W~~~deL~~~~la 250 (299)
.++|.+....+... .++|..+++|+++++++...+.
T Consensus 94 ~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~ 132 (154)
T 2pqv_A 94 EFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQNIQLV 132 (154)
T ss_dssp EEEEEEEESSCCCSEEEETTEEEEEEEEEGGGGGGSCEE
T ss_pred EEEEEEEecCCCCcccCCCCceeeEEEeEHHHHhhcCcC
Confidence 45788887655432 2467889999999999854443
No 47
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=146.12 Aligned_cols=131 Identities=21% Similarity=0.316 Sum_probs=86.4
Q ss_pred ecCCcEEEEEEEee--CCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeee---cCCC
Q 022283 137 YQNPKMVVGCLIEH--DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLD---IPRI 211 (299)
Q Consensus 137 y~~p~~vV~~iv~~--~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~---~p~~ 211 (299)
++++.+.|.+++.+ +++|||++|+.. ..|.|.+|||+||+|||+++||+||++||||+++....+++... .+..
T Consensus 22 ~~~~~v~v~~~v~~~~~~~vLL~~r~~~-~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l~~~~~~~~~~~~ 100 (199)
T 3h95_A 22 SMSHQVGVAGAVFDESTRKILVVQDRNK-LKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGA 100 (199)
T ss_dssp ----CCEEEEEEEETTTTEEEEEEESSS-STTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECC-----
T ss_pred cCcccceEEEEEEeCCCCEEEEEEEcCC-CCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccceEEEEEeeecCCCC
Confidence 45566666554433 589999998753 47899999999999999999999999999999998877776422 2221
Q ss_pred -CEEEEEEEEEecC--CCCCC-CCcceeeEEecCCCCCCCCCCCccHHHHHHHHHHHHHcC
Q 022283 212 -GQIYIIFLAKLKR--PHFSP-GPESSECRLFALDEIPFDSLAFSSISVTLQLFIDDIRMG 268 (299)
Q Consensus 212 -~~~~~~f~a~~~~--~~~~~-~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~~~~~g 268 (299)
....++|.+.+.. ....+ .+|..+++|+++++++......+....++..++.....+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~~~~~~~~ 161 (199)
T 3h95_A 101 FGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAKTENTTPITSRVARLLLYGYREG 161 (199)
T ss_dssp ----CEEEEEEEEESCCCCCCCTTTEEEEEEEEHHHHHHCSSBCHHHHHHHHHHHHHHHHC
T ss_pred ceeEEEEEEEEEcCCCcccCCCccceeeeEEEeHHHHhhhhhcChHHHHHHHHHHhhhhcC
Confidence 1223445555443 33344 378999999999999854444455555555555544443
No 48
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}
Probab=99.71 E-value=2.6e-17 Score=143.19 Aligned_cols=123 Identities=14% Similarity=0.215 Sum_probs=81.8
Q ss_pred EEEEEEE-eeC-CEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCc-eeecc----ceeeeecCC----
Q 022283 142 MVVGCLI-EHD-KKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARAD-VEVQS----PFAQLDIPR---- 210 (299)
Q Consensus 142 ~vV~~iv-~~~-~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~-v~~~~----~~~~~~~p~---- 210 (299)
.++.+++ +.+ ++|||++|+ ..|.|.+|||+||+|||+++||+||++||||++ +..+. .+.....+.
T Consensus 46 ~~~~~vv~~~~~~~vLL~~r~---~~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 122 (197)
T 3fcm_A 46 LTSSAFAVNKERNKFLMIHHN---IYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHIKR 122 (197)
T ss_dssp EEEEEEEECTTSCEEEEEEET---TTTEEECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEEEEEEECCEEET
T ss_pred EEEEEEEEECCCCEEEEEEec---CCCCEECCccccCCCCCHHHHHHHHHHHHHCCCcccccCCCceEEEEeeecCcccc
Confidence 3444444 444 499999986 368999999999999999999999999999998 54321 111111111
Q ss_pred ------CCEEEEEEEEEecCCC-CCCC-CcceeeEEecCCCCCCCCCCCccHHHHHHHHHHHHHcC
Q 022283 211 ------IGQIYIIFLAKLKRPH-FSPG-PESSECRLFALDEIPFDSLAFSSISVTLQLFIDDIRMG 268 (299)
Q Consensus 211 ------~~~~~~~f~a~~~~~~-~~~~-~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~~~~~g 268 (299)
.....+.|.+....+. +.++ +|..+++|+++++++ ..+..+....+++++++....+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~-~~~~~~~~~~il~~~~~~l~~~ 187 (197)
T 3fcm_A 123 GKYVSSHLHLNLTYLIECSEDETLMLKEDENSGVMWIPFNEIS-KYCSEPHMIPIYEKLINKLKTQ 187 (197)
T ss_dssp TEEECCEEEEEEEEEEECCTTSCCCCCC----CEEEEEGGGHH-HHCCCGGGHHHHHHHHHHHHC-
T ss_pred CcccCCceeEEEEEEEEeCCCcccCCCcccccceEEccHHHHH-hhcCCHHHHHHHHHHHHHHHhc
Confidence 1122256777666543 4444 788999999999998 3556777778888888776543
No 49
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Probab=99.71 E-value=9.7e-18 Score=139.74 Aligned_cols=117 Identities=25% Similarity=0.314 Sum_probs=80.8
Q ss_pred EEEEeeCCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccce----eeeecC-----------
Q 022283 145 GCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPF----AQLDIP----------- 209 (299)
Q Consensus 145 ~~iv~~~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~----~~~~~p----------- 209 (299)
+++++.+++|||++|... +|.|.+|||++|+|||+++||+||++||||+++..+... ..+.++
T Consensus 19 ~~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (165)
T 1f3y_A 19 ICLMNNDKKIFAASRLDI--PDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKVREKLNIQW 96 (165)
T ss_dssp EEEECTTSCEEEEEETTE--EEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEEEECSSCCBCCCCHHHHHHHGGGS
T ss_pred EEEECCCCcEEEEecCCC--CCcEECCeeccCCCCCHHHHHHHHHHHhhCCChhhhhcccccceeeecCccccccccccc
Confidence 345566789999998753 489999999999999999999999999999987543211 111111
Q ss_pred ---CCCEEEEEEEEEecCCC--CCC------CCcceeeEEecCCCCCCCCCCCccHHHHHHHHHHHH
Q 022283 210 ---RIGQIYIIFLAKLKRPH--FSP------GPESSECRLFALDEIPFDSLAFSSISVTLQLFIDDI 265 (299)
Q Consensus 210 ---~~~~~~~~f~a~~~~~~--~~~------~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~~~ 265 (299)
..+....+|.+.+.... +.. .+|..+++|++++++. .+..+.....+++.++..
T Consensus 97 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~--~~~~~~~~~~~~~~~~~l 161 (165)
T 1f3y_A 97 GSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLI--DLTVEFKKPVYKEVLSVF 161 (165)
T ss_dssp CSSCCSCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHH--HHBCGGGHHHHHHHHHHH
T ss_pred cccccCceEEEEEEEecCCcccccccCCCCCCChhheeEEecHHHHH--HHhhhhhHHHHHHHHHHh
Confidence 11224566777765432 322 4688999999999998 444443455666665544
No 50
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Probab=99.71 E-value=8.6e-18 Score=143.83 Aligned_cols=108 Identities=23% Similarity=0.221 Sum_probs=81.7
Q ss_pred cCCcEEEEEEEeeCCEEEEEEeecCCC-CCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeecC--CCCEE
Q 022283 138 QNPKMVVGCLIEHDKKILLCKRKIEPS-YGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIP--RIGQI 214 (299)
Q Consensus 138 ~~p~~vV~~iv~~~~kILL~rr~~~p~-~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~p--~~~~~ 214 (299)
.++..+++++++.+++|||++|.+.+. .|.|.+|||++|+|||+++||+||++||||+++..+.+++.+... ..+..
T Consensus 39 ~~~~~v~v~i~~~~~~vLL~~r~~~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~ 118 (182)
T 2yvp_A 39 GPVAASFVLPVTERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFHPQPSFTAVV 118 (182)
T ss_dssp SSCEEEEEEEBCTTSEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEECCCBCSCTTTBCCE
T ss_pred ecCCEEEEEEEcCCCEEEEEEeccCCCCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEEEEEEEeCCCCccccE
Confidence 345555555566789999999886542 678999999999999999999999999999999887777654332 22356
Q ss_pred EEEEEEEecC--CCCCC-CCcceeeEEecCCCCC
Q 022283 215 YIIFLAKLKR--PHFSP-GPESSECRLFALDEIP 245 (299)
Q Consensus 215 ~~~f~a~~~~--~~~~~-~~E~~~~~W~~~deL~ 245 (299)
+.+|.+.... +.... .+|..+++|++++++.
T Consensus 119 ~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~ 152 (182)
T 2yvp_A 119 FHPFLALKARVVTPPTLEEGELLESLELPLTEVY 152 (182)
T ss_dssp EEEEEECSCEECSCCCCCTTCCEEEEEEEHHHHH
T ss_pred EEEEEEeccccCCCCCCCCCceEEEEEEEHHHHH
Confidence 6777776432 33333 4788999999999986
No 51
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Probab=99.70 E-value=1.4e-16 Score=139.44 Aligned_cols=107 Identities=21% Similarity=0.192 Sum_probs=80.1
Q ss_pred CCcEEEEEEEeeCCEEEEEEeecCCC-CCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeec-C-CCCEEE
Q 022283 139 NPKMVVGCLIEHDKKILLCKRKIEPS-YGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI-P-RIGQIY 215 (299)
Q Consensus 139 ~p~~vV~~iv~~~~kILL~rr~~~p~-~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~-p-~~~~~~ 215 (299)
++..+++++++++ +|||++|.+.+. .+.|++|||++|+||++++||+||++||||+++..+.+++.+.. + ..+..+
T Consensus 48 ~~~av~vl~~~~~-~vLLvrq~r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~ 126 (198)
T 1vhz_A 48 NREAVMIVPIVDD-HLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKM 126 (198)
T ss_dssp CCCEEEEEEEETT-EEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTCCCEE
T ss_pred CCCEEEEEEEECC-EEEEEEcccCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEEeCCCCccCcEE
Confidence 4444444444444 999999876542 57899999999999999999999999999999998888876653 2 234566
Q ss_pred EEEEEEecCC-CCCCC-CcceeeEEecCCCCCC
Q 022283 216 IIFLAKLKRP-HFSPG-PESSECRLFALDEIPF 246 (299)
Q Consensus 216 ~~f~a~~~~~-~~~~~-~E~~~~~W~~~deL~~ 246 (299)
.+|.+....+ ....+ +|..++.|+++++++.
T Consensus 127 ~~f~a~~~~~~~~~~~~~E~~~~~w~~~~el~~ 159 (198)
T 1vhz_A 127 NIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMD 159 (198)
T ss_dssp EEEEEEEEEECCCCCCCSSCCCEEEEEGGGGGG
T ss_pred EEEEEEeCCcccCCCCCCceEEEEEEEHHHHHH
Confidence 7787775443 23333 7788899999999873
No 52
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Probab=99.70 E-value=5e-17 Score=137.76 Aligned_cols=103 Identities=20% Similarity=0.233 Sum_probs=74.6
Q ss_pred EEEEEEEeeCCEEEEEEeecCC-CCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeec-CC-CCEEEEEE
Q 022283 142 MVVGCLIEHDKKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI-PR-IGQIYIIF 218 (299)
Q Consensus 142 ~vV~~iv~~~~kILL~rr~~~p-~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~-p~-~~~~~~~f 218 (299)
.+|++++.+++++||++|.+.+ ..|.|.+|||++|+|||+++||+||++||||+ +..+.+++.+.. +. .+..+.+|
T Consensus 35 ~~v~vii~~~~~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~~l~~~~~~~~~~~~~~~~f 113 (170)
T 1v8y_A 35 PAVAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLTYLFSYFVSPGFTDEKTHVF 113 (170)
T ss_dssp CEEEEEEEETTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEEEEEEEESCTTTBCCEEEEE
T ss_pred CeEEEEEEECCEEEEEEEEeCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCceeeEEEecCCCccccEEEEE
Confidence 3444444448999999987654 36899999999999999999999999999999 888888776543 22 23566777
Q ss_pred EEEecC-CCCCC-CCcceeeEEecCCCCC
Q 022283 219 LAKLKR-PHFSP-GPESSECRLFALDEIP 245 (299)
Q Consensus 219 ~a~~~~-~~~~~-~~E~~~~~W~~~deL~ 245 (299)
.+.... ..... .+|..+++|+++++++
T Consensus 114 ~~~~~~~~~~~~~~~E~~~~~W~~~~el~ 142 (170)
T 1v8y_A 114 LAENLKEVEAHPDEDEAIEVVWMRPEEAL 142 (170)
T ss_dssp EEEEEEECC--------CEEEEECHHHHH
T ss_pred EEEeccccCCCCCCCceEEEEEEEHHHHH
Confidence 777644 33333 3788899999999986
No 53
>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}
Probab=99.70 E-value=1.2e-17 Score=148.43 Aligned_cols=124 Identities=18% Similarity=0.183 Sum_probs=88.9
Q ss_pred EEEEEEEeeCCEEEEEEeecCC----CCCceee-ceEEeeCCCC--H----HHHHHHHHHHHhCCceeeccceeeeecCC
Q 022283 142 MVVGCLIEHDKKILLCKRKIEP----SYGLWTL-PAGYMEIGES--A----AEGAIRETWEEARADVEVQSPFAQLDIPR 210 (299)
Q Consensus 142 ~vV~~iv~~~~kILL~rr~~~p----~~g~w~l-PgG~VE~GEs--~----eeAa~REv~EEtGl~v~~~~~~~~~~~p~ 210 (299)
++..||+.++++|||++|...+ ..|.|++ |||+||+||| + ++||+||++||||+++....+++...++.
T Consensus 69 ~i~~~II~~~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~~~~~ig~~~~~~ 148 (211)
T 3e57_A 69 VIPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLRELEFLGLINSST 148 (211)
T ss_dssp EEEEEEEEETTEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECCS
T ss_pred eEEEEEEEECCEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeeeccEEEEEEeccC
Confidence 4556777889999999998654 2378999 9999999999 4 99999999999999999999999887643
Q ss_pred C----CEEEEEEEEEecCCCCCCCCcceeeEEecCCCCCCCCCCCccHHHHHHHHHHHHH
Q 022283 211 I----GQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLFIDDIR 266 (299)
Q Consensus 211 ~----~~~~~~f~a~~~~~~~~~~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~~~~ 266 (299)
. ..+.++|.++...+++ ..+|..+++|+++++|+...-.++.-...+.+.++++.
T Consensus 149 ~~~~~~~l~~~f~~~~~~g~~-~~~E~~~~~W~~~~eL~~~~~~le~wS~lvl~~l~~~~ 207 (211)
T 3e57_A 149 TEVSRVHLGALFLGRGKFFSV-KEKDLFEWELIKLEELEKFSGVMEGWSKISAAVLLNLF 207 (211)
T ss_dssp SHHHHTEEEEEEEEEEEEEEE-SCTTTCEEEEEEHHHHHHHGGGCCHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEEEEEEEeCCcee-CCCCeEEEEEEEHHHHHHhHhhccchhHHHHHHHHHHH
Confidence 2 1344578888765543 23567789999999998432345555556666665543
No 54
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*
Probab=99.69 E-value=8.2e-17 Score=147.95 Aligned_cols=128 Identities=20% Similarity=0.221 Sum_probs=85.4
Q ss_pred ecCCcEEEEEEEee--CCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeecC-CCCE
Q 022283 137 YQNPKMVVGCLIEH--DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIP-RIGQ 213 (299)
Q Consensus 137 y~~p~~vV~~iv~~--~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~p-~~~~ 213 (299)
|.....++++|+.+ +++|||++|.+. +|.|.+|||+||+|||+++||+||++||||+++..+..+..+..+ ..+.
T Consensus 97 ~~~~v~~v~avv~~~~~~~vLLv~r~~~--~g~W~lPgG~ve~gEs~~eAA~REl~EEtGl~~~~l~~~~~~~~~~~~~~ 174 (271)
T 2a6t_A 97 YKTRIPVRGAIMLDMSMQQCVLVKGWKA--SSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQ 174 (271)
T ss_dssp HSCCCCEEEEEEBCSSSSEEEEEEESST--TCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCCTTCEEEEEETTE
T ss_pred cCCCCCeEEEEEEECCCCEEEEEEEeCC--CCeEECCcccCCCCcCHHHHHHHHHHHHhCCCceeeeeeeeeccCCcCCc
Confidence 33344555566644 389999999754 588999999999999999999999999999998765433322221 2344
Q ss_pred EEEEEEEEecCC--CCC--CCCcceeeEEecCCCCCCCCCC-----------CccHHHHHHHHHHHHH
Q 022283 214 IYIIFLAKLKRP--HFS--PGPESSECRLFALDEIPFDSLA-----------FSSISVTLQLFIDDIR 266 (299)
Q Consensus 214 ~~~~f~a~~~~~--~~~--~~~E~~~~~W~~~deL~~~~la-----------f~s~~~~l~~~l~~~~ 266 (299)
.+.+|.+..... ... ..+|+.+++|+++++++..... .......+..|++...
T Consensus 175 ~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~~~p~~~~L~~wl~~~~ 242 (271)
T 2a6t_A 175 NVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKNKPQTMKNKFYMVIPFLAPLKKWIKKRN 242 (271)
T ss_dssp EEEEEEECCCCTTCCCC------EEEEEEEEGGGSTTCC------CCGGGTTTGGGHHHHHHHHHHHH
T ss_pred eEEEEEEEEecCcccCCCCCccceeEEEEEEHHHHHHHHhcCccccccchhhhhHHHHHHHHHHHhcC
Confidence 566777765432 222 3478899999999999842211 1233567777887654
No 55
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=99.69 E-value=1.8e-17 Score=140.11 Aligned_cols=104 Identities=14% Similarity=0.179 Sum_probs=78.8
Q ss_pred cEEEEEE-EeeCCEEEEEEeecCCC--CCcee-eceEEeeCCCCHHHHHHHHHHHHhCCceeec--cceeeee-cCCC-C
Q 022283 141 KMVVGCL-IEHDKKILLCKRKIEPS--YGLWT-LPAGYMEIGESAAEGAIRETWEEARADVEVQ--SPFAQLD-IPRI-G 212 (299)
Q Consensus 141 ~~vV~~i-v~~~~kILL~rr~~~p~--~g~w~-lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~--~~~~~~~-~p~~-~ 212 (299)
..++.++ ++.+++|||++|...+. +|.|. +|||++|+|||+++||+||++||||+++... ..++.+. ++.. .
T Consensus 34 ~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~ 113 (171)
T 1q27_A 34 VRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTLS 113 (171)
T ss_dssp CEEEEEEEEETTTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEEEEECSSSSCCS
T ss_pred ceEEEEEEECCCCeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeccCCCCc
Confidence 4445444 45678999999865432 68998 9999999999999999999999999998774 4455544 4332 2
Q ss_pred EEEEEEEEEecCCCCCCC-CcceeeEEecCCCCC
Q 022283 213 QIYIIFLAKLKRPHFSPG-PESSECRLFALDEIP 245 (299)
Q Consensus 213 ~~~~~f~a~~~~~~~~~~-~E~~~~~W~~~deL~ 245 (299)
..+++|.+.. .+++.++ .|..+++|+++++++
T Consensus 114 ~~~~~f~~~~-~~~~~~~~~E~~~~~W~~~~el~ 146 (171)
T 1q27_A 114 SFMCVYELRS-DATPIFNPNDISGGEWLTPEHLL 146 (171)
T ss_dssp SEEEEEEEEC-CCCCCSCTTTCSCCEEECHHHHH
T ss_pred cEEEEEEEEE-CCccccCchhhheEEEecHHHHH
Confidence 3667788877 4545544 788899999999987
No 56
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=99.69 E-value=2.4e-17 Score=142.33 Aligned_cols=121 Identities=17% Similarity=0.242 Sum_probs=86.5
Q ss_pred EEEeeCCEEEEEEeecCC--CCCceee-ceEEeeCCCCHHHHHHHHHHHHhCCceeec-cceeeeec----CCC---CEE
Q 022283 146 CLIEHDKKILLCKRKIEP--SYGLWTL-PAGYMEIGESAAEGAIRETWEEARADVEVQ-SPFAQLDI----PRI---GQI 214 (299)
Q Consensus 146 ~iv~~~~kILL~rr~~~p--~~g~w~l-PgG~VE~GEs~eeAa~REv~EEtGl~v~~~-~~~~~~~~----p~~---~~~ 214 (299)
+|++.+++|||++|.... .+|.|.+ |||+||+|||+++||+||++||||+++..+ .+++.+.+ +.. +..
T Consensus 38 ~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (190)
T 1hzt_A 38 WLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGIVENEV 117 (190)
T ss_dssp EEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTSCEEEEE
T ss_pred EEEcCCCEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhheeeeeEEEEeeCCCCCcceEE
Confidence 344557899999987532 2689999 999999999999999999999999999877 65554332 222 234
Q ss_pred EEEEEEEecCCCCCC-CCcceeeEEecCCCCCCC-----CCCCccHHHHHHHHHHHHHc
Q 022283 215 YIIFLAKLKRPHFSP-GPESSECRLFALDEIPFD-----SLAFSSISVTLQLFIDDIRM 267 (299)
Q Consensus 215 ~~~f~a~~~~~~~~~-~~E~~~~~W~~~deL~~~-----~laf~s~~~~l~~~l~~~~~ 267 (299)
+.+|.+... +++.+ .+|..+++|+++++++.. ....+..+.+++.+++....
T Consensus 118 ~~~f~~~~~-~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 175 (190)
T 1hzt_A 118 CPVFAARTT-SALQINDDEVMDYQWCDLADVLHGIDATPWAFSPWMVMQATNREARKRL 175 (190)
T ss_dssp CCEEEEEBC-SCCCCCTTTEEEEEEECHHHHHHHHHHCGGGBCHHHHHHHHSHHHHHHH
T ss_pred EEEEEEecC-CCCcCCccceeeEEEecHHHHHHHHHcChhhcCchHHHHHHHHHHHHhh
Confidence 467878764 34444 478899999999998731 11234456667777665543
No 57
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A
Probab=99.68 E-value=6.3e-16 Score=130.86 Aligned_cols=103 Identities=25% Similarity=0.311 Sum_probs=77.7
Q ss_pred cEEEEEEE-eeCCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeee------cCC---
Q 022283 141 KMVVGCLI-EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLD------IPR--- 210 (299)
Q Consensus 141 ~~vV~~iv-~~~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~------~p~--- 210 (299)
..+|++++ +.+++|||++|.. .|.|.+|||++|+|||+++||+||++||||+++..+.+++.+. .+.
T Consensus 8 ~~~v~~~i~~~~~~vLl~~r~~---~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
T 2kdv_A 8 RPNVGIVICNRQGQVMWARRFG---QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRLV 84 (164)
T ss_dssp EEEEEEEEECTTSEEEEEEETT---CCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEECSSCEEEECCTTTC
T ss_pred CcEEEEEEEccCCEEEEEEEcC---CCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEEEEEecceeEEecCccee
Confidence 34455444 5678999998863 6889999999999999999999999999999998777666532 221
Q ss_pred --------CCEEEEEEEEEecCCC--CCC----CCcceeeEEecCCCCCC
Q 022283 211 --------IGQIYIIFLAKLKRPH--FSP----GPESSECRLFALDEIPF 246 (299)
Q Consensus 211 --------~~~~~~~f~a~~~~~~--~~~----~~E~~~~~W~~~deL~~ 246 (299)
.+...++|.+.+..+. +.. .+|+.+++|++++++..
T Consensus 85 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~E~~~~~W~~~~e~~~ 134 (164)
T 2kdv_A 85 RWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRWVSYWYPVR 134 (164)
T ss_dssp CTTSSSCCCEEEEEEEEEEESSCGGGCCSCSSSSCSEEEEEEEETTTGGG
T ss_pred eeccCcccccceeEEEEEEecCCccccccCCCCCchhceEEEecHHHhhh
Confidence 1235678888876542 332 35889999999999863
No 58
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*
Probab=99.68 E-value=8.3e-17 Score=141.40 Aligned_cols=108 Identities=20% Similarity=0.253 Sum_probs=77.6
Q ss_pred cCCcEEEEEEEeeCCEEEEEEeecCCC-CCceeeceEEee-CCCCHHHHHHHHHHHHhCCceeeccceeeee-cCCC-CE
Q 022283 138 QNPKMVVGCLIEHDKKILLCKRKIEPS-YGLWTLPAGYME-IGESAAEGAIRETWEEARADVEVQSPFAQLD-IPRI-GQ 213 (299)
Q Consensus 138 ~~p~~vV~~iv~~~~kILL~rr~~~p~-~g~w~lPgG~VE-~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~-~p~~-~~ 213 (299)
..+..+++++++.+++|||++|.+.+. .|.|++|||++| +|||+++||+||++||||+++..+.+++.+. .+.. ..
T Consensus 41 ~~~~av~v~i~~~~~~vLLvrr~r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~ 120 (207)
T 1mk1_A 41 EHFGAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDE 120 (207)
T ss_dssp EECCEEEEEECCTTSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTBCC
T ss_pred eCCCEEEEEEEcCCCEEEEEEeecCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEEEEEEEcCCCcccc
Confidence 345555555566789999999887653 578999999999 9999999999999999999998887776542 2222 22
Q ss_pred EEEEEEEEecCCCCC---C-CCcceeeEEecCCCCC
Q 022283 214 IYIIFLAKLKRPHFS---P-GPESSECRLFALDEIP 245 (299)
Q Consensus 214 ~~~~f~a~~~~~~~~---~-~~E~~~~~W~~~deL~ 245 (299)
.+.+|.+....+... . .+|..++.|++++++.
T Consensus 121 ~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~ 156 (207)
T 1mk1_A 121 SVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAA 156 (207)
T ss_dssp CEEEEEEEEEEECCC----------CEEEEEHHHHH
T ss_pred EEEEEEEEccccCCCCCCCCCCceEEEEEEEHHHHH
Confidence 466777775543322 2 3678899999999986
No 59
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A
Probab=99.67 E-value=7.1e-17 Score=139.60 Aligned_cols=104 Identities=23% Similarity=0.319 Sum_probs=78.6
Q ss_pred EEEEEEEeeCC--EEEEEEeecC--CCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeec--CCCCEEE
Q 022283 142 MVVGCLIEHDK--KILLCKRKIE--PSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI--PRIGQIY 215 (299)
Q Consensus 142 ~vV~~iv~~~~--kILL~rr~~~--p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~--p~~~~~~ 215 (299)
.++++++++++ +|||++|... +..|.|.+|||++|+|||+++||+||++||||+++..+.+++.+.. ...+..+
T Consensus 36 ~~~~v~i~~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~ 115 (194)
T 1nqz_A 36 AAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTPVGFHV 115 (194)
T ss_dssp EEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEETTTEEE
T ss_pred EEEEEEEecCCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccceEEEEEccCccCCCCeEE
Confidence 34444556667 8999998753 2368999999999999999999999999999999988777765443 2335667
Q ss_pred EEEEEEecCC-C-CCC-CCcceeeEEecCCCC-C
Q 022283 216 IIFLAKLKRP-H-FSP-GPESSECRLFALDEI-P 245 (299)
Q Consensus 216 ~~f~a~~~~~-~-~~~-~~E~~~~~W~~~deL-~ 245 (299)
.+|.+..... + ... .+|..+++|++++++ +
T Consensus 116 ~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 149 (194)
T 1nqz_A 116 TPVLGRIAPEALDTLRVTPEVAQIITPTLAELRA 149 (194)
T ss_dssp EEEEEEECGGGGGGCCCCTTEEEEECCBHHHHHH
T ss_pred EEEEEEecCCccccCCCccceeEEEEEEHHHhcc
Confidence 7788887532 2 333 478899999999999 6
No 60
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=7.7e-17 Score=132.42 Aligned_cols=102 Identities=25% Similarity=0.290 Sum_probs=71.1
Q ss_pred EEEEEEE-eeC-CEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeee-ecCCCCEEEEEE
Q 022283 142 MVVGCLI-EHD-KKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQL-DIPRIGQIYIIF 218 (299)
Q Consensus 142 ~vV~~iv-~~~-~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~-~~p~~~~~~~~f 218 (299)
.++++++ +++ ++|||++|.. .|.|.+|||++|+|||+++||+||++||||+++..+..+..+ ..+..+..+.+|
T Consensus 5 ~~~~~~i~~~~~~~vLl~~r~~---~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 81 (146)
T 2jvb_A 5 PVRGAAIFNENLSKILLVQGTE---SDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQFIERNIQGKNYKIF 81 (146)
T ss_dssp CCEEEEEBCTTSSEEEEECCSS---SSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSSSSCSSCEEEEEETTEEEEEE
T ss_pred EEEEEEEEeCCCCEEEEEEEcC---CCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchHhcccccccccccCCceEEEE
Confidence 3344444 443 8999998753 589999999999999999999999999999998754333222 222233445555
Q ss_pred EEEecCC--C--CCCCCcceeeEEecCCCCCC
Q 022283 219 LAKLKRP--H--FSPGPESSECRLFALDEIPF 246 (299)
Q Consensus 219 ~a~~~~~--~--~~~~~E~~~~~W~~~deL~~ 246 (299)
.+..... . ....+|+.+++|+++++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 113 (146)
T 2jvb_A 82 LISGVSEVFNFKPQVRNEIDKIEWFDFKKISK 113 (146)
T ss_dssp EECCCCSSSCCCCCCSSSCCCEEEEEHHHHHT
T ss_pred EEEeccccccCCcCCcchhheeEEeEHHHHHh
Confidence 5543221 1 22357889999999999874
No 61
>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A
Probab=99.66 E-value=1.7e-16 Score=137.79 Aligned_cols=110 Identities=16% Similarity=0.160 Sum_probs=81.7
Q ss_pred eeecCCcEEEEEEEe-eCCEEEEEEeecCC-------CCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeee
Q 022283 135 IAYQNPKMVVGCLIE-HDKKILLCKRKIEP-------SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQL 206 (299)
Q Consensus 135 ~~y~~p~~vV~~iv~-~~~kILL~rr~~~p-------~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~ 206 (299)
..+.++..+++++++ +++++||+++.+.+ ..+.|++|||++| |||+++||+||++||||+++..+.+++.+
T Consensus 40 ~~~~~~~av~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~~~~l~~~ 118 (191)
T 3o6z_A 40 EVYDRGNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFEL 118 (191)
T ss_dssp EEEECCCEEEEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSCEEEEEEE
T ss_pred EEEecCCEEEEEEEECCCCEEEEEEcCCccccccCCCCCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCcEEEEEEE
Confidence 345666666666665 36899999987643 3678999999999 99999999999999999999888877764
Q ss_pred ec-C-CCCEEEEEEEEEecCCC-----CCCCCcceeeEEecCCCCC
Q 022283 207 DI-P-RIGQIYIIFLAKLKRPH-----FSPGPESSECRLFALDEIP 245 (299)
Q Consensus 207 ~~-p-~~~~~~~~f~a~~~~~~-----~~~~~E~~~~~W~~~deL~ 245 (299)
.. + ..+..+.+|.+...... ....+|..++.|++++++.
T Consensus 119 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~ 164 (191)
T 3o6z_A 119 YMSPGGVTELIHFFIAEYSDNQRANAGGGVEDEAIEVLELPFSQAL 164 (191)
T ss_dssp ESCTTTBCCEEEEEEEECCTTCC--------CCSSEEEEEEHHHHH
T ss_pred EeCCCccCcEEEEEEEEEcccccccCCCCCCCcEEEEEEEEHHHHH
Confidence 32 3 23456778888875431 1225788899999999986
No 62
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Probab=99.66 E-value=5.6e-17 Score=141.66 Aligned_cols=93 Identities=16% Similarity=0.250 Sum_probs=73.4
Q ss_pred CCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeecCCCCEEEEEEEEEecCCC--CC
Q 022283 151 DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRPH--FS 228 (299)
Q Consensus 151 ~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~p~~~~~~~~f~a~~~~~~--~~ 228 (299)
+++|||++|.+. +|.|.+|||++|+|||+++||+||++||||+++....+++.+..+.......+|.+.+.... ..
T Consensus 53 ~~~vLLv~r~~~--~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~ 130 (194)
T 2fvv_A 53 EEEVLLVSSSRH--PDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQERKHRTYVYVLIVTEVLEDWE 130 (194)
T ss_dssp CCEEEEEECSSC--TTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECSSCH
T ss_pred CCEEEEEEEeCC--CCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccceEEEEEEcCCCceEEEEEEEEEccccCCCC
Confidence 589999998754 48999999999999999999999999999999998888888776655556667777654321 11
Q ss_pred CC-CcceeeEEecCCCCC
Q 022283 229 PG-PESSECRLFALDEIP 245 (299)
Q Consensus 229 ~~-~E~~~~~W~~~deL~ 245 (299)
.. .+..+++|+++++++
T Consensus 131 ~~~e~~~~~~W~~~~el~ 148 (194)
T 2fvv_A 131 DSVNIGRKREWFKIEDAI 148 (194)
T ss_dssp HHHHHCCCEEEEEHHHHH
T ss_pred CcccccceEEEEEHHHHH
Confidence 11 234678999999987
No 63
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Probab=99.65 E-value=2.7e-16 Score=138.63 Aligned_cols=113 Identities=18% Similarity=0.138 Sum_probs=82.3
Q ss_pred CceeecCCcEEEEEEEe-eCCEEEEEEeecCCC------CCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceee
Q 022283 133 GKIAYQNPKMVVGCLIE-HDKKILLCKRKIEPS------YGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQ 205 (299)
Q Consensus 133 g~~~y~~p~~vV~~iv~-~~~kILL~rr~~~p~------~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~ 205 (299)
.+..+.++..+++++++ ++++|||+++.+.+. .+.|++|||++|+||++++||+||++||||+++..+.+++.
T Consensus 50 ~r~~~~~~~av~vl~~~~~~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~l~~ 129 (209)
T 1g0s_A 50 RREIFERGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLS 129 (209)
T ss_dssp EEEEEECCCEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_pred EEEEEeCCCEEEEEEEECCCCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEEeEE
Confidence 34455667766666666 478999998876543 36799999999999999999999999999999988877775
Q ss_pred ee-cCCC-CEEEEEEEEEecC----CC-CCCC-CcceeeEEecCCCCC
Q 022283 206 LD-IPRI-GQIYIIFLAKLKR----PH-FSPG-PESSECRLFALDEIP 245 (299)
Q Consensus 206 ~~-~p~~-~~~~~~f~a~~~~----~~-~~~~-~E~~~~~W~~~deL~ 245 (299)
+. .|.. +..+++|.+.... +. ...+ +|..++.|++++++.
T Consensus 130 ~~~~~g~~~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~ 177 (209)
T 1g0s_A 130 FLASPGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAY 177 (209)
T ss_dssp EESCTTTBCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHH
T ss_pred EecCCCccCcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHH
Confidence 53 2322 3466778887532 11 1223 677789999999976
No 64
>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3
Probab=99.65 E-value=2.6e-16 Score=131.05 Aligned_cols=109 Identities=17% Similarity=0.193 Sum_probs=79.9
Q ss_pred CCEEEEEEeecCC-CCCceeeceEEeeCCCCHH-HHHHHHHHHHhC-CceeeccceeeeecCCCC--EEEEEEEEEecCC
Q 022283 151 DKKILLCKRKIEP-SYGLWTLPAGYMEIGESAA-EGAIRETWEEAR-ADVEVQSPFAQLDIPRIG--QIYIIFLAKLKRP 225 (299)
Q Consensus 151 ~~kILL~rr~~~p-~~g~w~lPgG~VE~GEs~e-eAa~REv~EEtG-l~v~~~~~~~~~~~p~~~--~~~~~f~a~~~~~ 225 (299)
+++|||+||.... ..|+|+||||.+|+||+++ +||.||++|||| +++.....++...+.+.+ ..+.+|.+....+
T Consensus 33 ~~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 112 (155)
T 1x51_A 33 GAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFSHIKLTYQVYGLALEGQ 112 (155)
T ss_dssp SEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCSSCEEEEEEEEEECSSC
T ss_pred CCEEEEEECCCCCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeeeeecceEEEecCCccEEEEEEEEEEcCC
Confidence 4799999987542 3689999999999999997 999999999999 887666666554443433 4456788887655
Q ss_pred CCCCCCcceeeEEecCCCCCCCCCCCcc-HHHHHHHHH
Q 022283 226 HFSPGPESSECRLFALDEIPFDSLAFSS-ISVTLQLFI 262 (299)
Q Consensus 226 ~~~~~~E~~~~~W~~~deL~~~~laf~s-~~~~l~~~l 262 (299)
++. ..|..+++|++++++. .+.++. .+.++..++
T Consensus 113 ~~~-~~e~~~~~W~~~~el~--~~~~~~~~~~~l~~~~ 147 (155)
T 1x51_A 113 TPV-TTVPPGARWLTQEEFH--TAAVSTAMKKVFRVYQ 147 (155)
T ss_dssp CCC-CCCCTTEEEEEHHHHH--HSCCCHHHHHHHHHHH
T ss_pred CCC-CCCCCccEEccHHHhh--hcCCCHHHHHHHHHHH
Confidence 432 2466789999999998 556655 344444443
No 65
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*
Probab=99.64 E-value=5.8e-16 Score=136.46 Aligned_cols=105 Identities=19% Similarity=0.168 Sum_probs=75.6
Q ss_pred cEEEEEEEeeC---CEEEEEEeecCCC-CCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeee-cC-CCCEE
Q 022283 141 KMVVGCLIEHD---KKILLCKRKIEPS-YGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLD-IP-RIGQI 214 (299)
Q Consensus 141 ~~vV~~iv~~~---~kILL~rr~~~p~-~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~-~p-~~~~~ 214 (299)
.++|++++.++ ++|||+++.+.+. .+.|++|||++|+||++++||+||++||||+++....+++... .+ +.+..
T Consensus 63 av~v~~v~~~~~~~~~vlLv~q~R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~ 142 (212)
T 2dsc_A 63 GVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNCT 142 (212)
T ss_dssp EEEEEEEEECTTSCCEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEECCCEESCTTTBCCE
T ss_pred EEEEEEEEeCCCCCcEEEEEEeecCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccceEEeccEEcCCCccCce
Confidence 34444445443 4899999866543 4689999999999999999999999999999998777665432 23 23445
Q ss_pred EEEEEEEecCC-------CCCC-CCcceeeEEecCCCCC
Q 022283 215 YIIFLAKLKRP-------HFSP-GPESSECRLFALDEIP 245 (299)
Q Consensus 215 ~~~f~a~~~~~-------~~~~-~~E~~~~~W~~~deL~ 245 (299)
+++|.+.+... ...+ .+|..++.|++++++.
T Consensus 143 ~~~~~a~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~ 181 (212)
T 2dsc_A 143 IHIVTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLL 181 (212)
T ss_dssp EEEEEEEEETTSGGGSSCCCCCCTTCCCEEEEEEGGGHH
T ss_pred EEEEEEEEeCccccccCCCCCCCCCceEEEEEEEHHHHH
Confidence 66677764321 2233 3788899999999987
No 66
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.63 E-value=4.7e-16 Score=147.73 Aligned_cols=116 Identities=21% Similarity=0.346 Sum_probs=89.9
Q ss_pred CCEEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeecCCC---------------CEEE
Q 022283 151 DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI---------------GQIY 215 (299)
Q Consensus 151 ~~kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~p~~---------------~~~~ 215 (299)
+.+|||++|. ..|.|++|||+||+|||+++||+||++||||+++....+++...+.+. ...+
T Consensus 37 ~~~vLLv~r~---~~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~ 113 (364)
T 3fjy_A 37 SIEVCIVHRP---KYDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTADTKHT 113 (364)
T ss_dssp TEEEEEEEET---TTTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEEEEEEEC---------------------CE
T ss_pred ceEEEEEEcC---CCCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeeccccceEEEeccCCCcccccccccccCceEE
Confidence 3589999985 358999999999999999999999999999999988888876555332 3455
Q ss_pred EEEEEEecCCC------------CCCC-CcceeeEEecCCCCCCCCCCCccHHHHHHHHHHHHHcCCc
Q 022283 216 IIFLAKLKRPH------------FSPG-PESSECRLFALDEIPFDSLAFSSISVTLQLFIDDIRMGKL 270 (299)
Q Consensus 216 ~~f~a~~~~~~------------~~~~-~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~~~~~g~~ 270 (299)
.+|.+....++ ...+ +|+.+++|++++++. ..+.++..+.+++.+++....|..
T Consensus 114 ~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~-~~~~~~~~r~il~~~~~~l~~g~~ 180 (364)
T 3fjy_A 114 LYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREAR-KILSHSTDKDTLAVFVDRVQEGAA 180 (364)
T ss_dssp EEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHH-HHCSCHHHHHHHHHHHHHHHTTGG
T ss_pred EEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHH-HHhcchhhHHHHHHHHHHhccCCC
Confidence 77888776542 1233 789999999999987 456678888899999888776553
No 67
>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}
Probab=99.63 E-value=8.7e-16 Score=136.93 Aligned_cols=109 Identities=19% Similarity=0.133 Sum_probs=77.6
Q ss_pred ecCCcEEEEEEEe-eCCEEEEEEeecCCC--------------------------------CCceeeceEEeeC-CCCHH
Q 022283 137 YQNPKMVVGCLIE-HDKKILLCKRKIEPS--------------------------------YGLWTLPAGYMEI-GESAA 182 (299)
Q Consensus 137 y~~p~~vV~~iv~-~~~kILL~rr~~~p~--------------------------------~g~w~lPgG~VE~-GEs~e 182 (299)
..++..|++++++ .++++||+|+.+.+. ++.|++|||++|+ |||++
T Consensus 33 v~~~~aV~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welPgG~ve~~gEs~~ 112 (218)
T 3q91_A 33 MKTHDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGLSLE 112 (218)
T ss_dssp --CCCEEEEEEEEGGGTEEEEEEEECHHHHHHHTC-------------------------CCEEEECEEEECCSSSCCHH
T ss_pred EEcCCeEEEEEEECCCCEEEEEEccccccccccccccccccccccccccccccccccccCCCeEEECCcceeCCCCCCHH
Confidence 3445555555555 468999999875331 4689999999999 99999
Q ss_pred HHHHHHHHHHhCCce--eeccceeeeec-C-CCCEEEEEEEEEecCC------CCCCC-CcceeeEEecCCCCC
Q 022283 183 EGAIRETWEEARADV--EVQSPFAQLDI-P-RIGQIYIIFLAKLKRP------HFSPG-PESSECRLFALDEIP 245 (299)
Q Consensus 183 eAa~REv~EEtGl~v--~~~~~~~~~~~-p-~~~~~~~~f~a~~~~~------~~~~~-~E~~~~~W~~~deL~ 245 (299)
+||+||++||||+++ ..+..++.+.. + ..+..+.+|.+..... ...++ +|..++.|++++++.
T Consensus 113 eaA~REl~EEtGl~~~~~~l~~l~~~~~~~g~~~~~~~~f~a~~~~~~~~~~~~~~~d~~E~~ev~wv~l~el~ 186 (218)
T 3q91_A 113 EVACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGELIEVVHLPLEGAQ 186 (218)
T ss_dssp HHHHHHHHHHHCBCCCGGGCEEEEEEEEC---CCEEEEEEEEEECGGGBCC---------CCEEEEEEEGGGHH
T ss_pred HHHHHHHHHHhCCccccCceEEEEEEecCCCccceEEEEEEEEECCcccccCCCCCCCCCcEEEEEEEEHHHHH
Confidence 999999999999998 66666665432 2 3456778888886531 22333 788999999999975
No 68
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Probab=99.61 E-value=4.8e-16 Score=137.42 Aligned_cols=111 Identities=16% Similarity=0.137 Sum_probs=81.9
Q ss_pred CCceeecCCcEEEEEEEeeCCEEEEEEeecCCCCCceeeceEEeeCCC-CHHHHHHHHHHHHhCCceeecc-----ceee
Q 022283 132 CGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGE-SAAEGAIRETWEEARADVEVQS-----PFAQ 205 (299)
Q Consensus 132 Cg~~~y~~p~~vV~~iv~~~~kILL~rr~~~p~~g~w~lPgG~VE~GE-s~eeAa~REv~EEtGl~v~~~~-----~~~~ 205 (299)
|....|.....+++++++++++|||.+|. .|.|++|||++|+|| |+++||+||++||||+++.... +++.
T Consensus 36 ~~~~l~~~~~~vv~~i~~~~~~vLl~~r~----~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~ 111 (212)
T 1u20_A 36 CHALLHAPSQAKLFDRVPIRRVLLMMMRF----DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSS 111 (212)
T ss_dssp EEEEEEEECCCEETTTEECCEEEEEEEET----TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEE
T ss_pred ceEEEeCCCceEEEEEEecCCEEEEEEeC----CCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCccccceeeeeEEEe
Confidence 44455544444445556667889998872 689999999999999 9999999999999999987553 4555
Q ss_pred eecCCC-CEEEEEEEEEecCCCC----------C-CCCcceeeEEecCCCCCC
Q 022283 206 LDIPRI-GQIYIIFLAKLKRPHF----------S-PGPESSECRLFALDEIPF 246 (299)
Q Consensus 206 ~~~p~~-~~~~~~f~a~~~~~~~----------~-~~~E~~~~~W~~~deL~~ 246 (299)
..+.++ +..+++|.+....+++ . .+.|..++.|+++++++.
T Consensus 112 ~~~~~~~~~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~ 164 (212)
T 1u20_A 112 QVREHPQKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRD 164 (212)
T ss_dssp EEECTTSCEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTT
T ss_pred ccccCCCcEEEEEEEEEecCCCcccccccccccccCCcceEEEEEEEHHHhhh
Confidence 544343 6677888888654321 1 236778899999999974
No 69
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=99.60 E-value=2.4e-15 Score=143.66 Aligned_cols=113 Identities=19% Similarity=0.280 Sum_probs=85.9
Q ss_pred EEEEE-eeCCEEEEEEeecCC-CCCceeeceEEeeCCCCHHHHHHHHHHHHhCCceeeccceeeeecCCCC--EEEEEEE
Q 022283 144 VGCLI-EHDKKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIG--QIYIIFL 219 (299)
Q Consensus 144 V~~iv-~~~~kILL~rr~~~p-~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~~~~~~~~p~~~--~~~~~f~ 219 (299)
+++|+ +++++|||+||.... ..|+|+||||.+|+| |+++|+.||++||+|+++....+++...+.+.+ ..+.+|.
T Consensus 243 ~~~vi~~~~g~vLL~rR~~~g~~~GlWefPGG~ve~g-t~~~al~REl~EE~Gl~v~~~~~l~~~~h~~~h~~~~~~~~~ 321 (369)
T 3fsp_A 243 AVAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGA-DGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQLTVFP 321 (369)
T ss_dssp EEEEEECSSSEEEEEECCSSSTTTTCEECCEEECSSS-CTHHHHHHHHTTSSSCCEEECCCCCEEEEECSSEEEEEEEEE
T ss_pred EEEEEEeCCCEEEEEECCCCCCcCCcccCCCcccCCC-CcHHHHHHHHHHHhCCceeeecccccEEEEcceEEEEEEEEE
Confidence 34444 467999999998643 379999999999999 999999999999999999998888876665554 4556787
Q ss_pred EEecCCCCCCCCcceeeEEecCCCCCCCCCCCccH-HHHHHHHHH
Q 022283 220 AKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSI-SVTLQLFID 263 (299)
Q Consensus 220 a~~~~~~~~~~~E~~~~~W~~~deL~~~~laf~s~-~~~l~~~l~ 263 (299)
+....+ ..|..+++|+++++++ .+.++.. +.+++.+.+
T Consensus 322 ~~~~~~----~~e~~~~~Wv~~~el~--~~~l~~~~~~il~~l~~ 360 (369)
T 3fsp_A 322 GRLVHG----GPVEEPYRLAPEDELK--AYAFPVSHQRVWREYKE 360 (369)
T ss_dssp EEECCS----SCCCTTEEEEEGGGGG--GSCCCHHHHHHHHHHHH
T ss_pred EEEcCC----CCCccccEEeeHHHhh--hCCCCHHHHHHHHHHHH
Confidence 876543 3567789999999998 4555543 444444443
No 70
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A
Probab=99.56 E-value=5.3e-15 Score=131.68 Aligned_cols=109 Identities=18% Similarity=0.170 Sum_probs=77.5
Q ss_pred CCceeecCCcEEEE-EEEeeCCEEEEEEeecCCCCCceeeceEEeeCCC-CHHHHHHHHHHHHhCCceee--c---ccee
Q 022283 132 CGKIAYQNPKMVVG-CLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGE-SAAEGAIRETWEEARADVEV--Q---SPFA 204 (299)
Q Consensus 132 Cg~~~y~~p~~vV~-~iv~~~~kILL~rr~~~p~~g~w~lPgG~VE~GE-s~eeAa~REv~EEtGl~v~~--~---~~~~ 204 (299)
|+...|+ +.+.++ +++..++++||..|. .|.|++|||+||+|| |+++||+||++||||+++.. + .++.
T Consensus 45 ~~~~~~~-~~~~~v~~vi~~~~~~ll~~r~----~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~~~~l~~l~~~~ 119 (217)
T 2xsq_A 45 CHALLYA-PDPGMLFGRIPLRYAILMQMRF----DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRS 119 (217)
T ss_dssp EEEEEEE-EEEEEETTTEEEEEEEEEEEET----TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGGCCCCGGGEEE
T ss_pred eeeEEEc-CCCcEEEEEEEeeCcEEEEEcc----CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCccceeEEEEEEe
Confidence 7778886 444433 333222356666553 588999999999999 99999999999999999873 2 2333
Q ss_pred eeecCCCCEEEEEEEEEecCCCC----------CC-CCcceeeEEecCCCCC
Q 022283 205 QLDIPRIGQIYIIFLAKLKRPHF----------SP-GPESSECRLFALDEIP 245 (299)
Q Consensus 205 ~~~~p~~~~~~~~f~a~~~~~~~----------~~-~~E~~~~~W~~~deL~ 245 (299)
..+....+..+++|.+.+..+++ .. .+|..++.|++++++.
T Consensus 120 ~~~~~~~~~~~~~f~~~l~~~~~~~~e~~~~~~~~~~~E~~~v~~vPl~~l~ 171 (217)
T 2xsq_A 120 SHVGSGPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTLR 171 (217)
T ss_dssp EEECSSSSEEEEEEEEECCHHHHHHHHHHGGGSTTBTTTEEEEEECCCSBCT
T ss_pred ecCCCCCeEEEEEEEEEeccccceecccccccccccCCceeeEEEEEHHHhh
Confidence 33333456778888888754332 22 3678889999999997
No 71
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*
Probab=99.56 E-value=3.4e-14 Score=131.78 Aligned_cols=107 Identities=21% Similarity=0.299 Sum_probs=76.3
Q ss_pred EEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhCCce------------eeccce---ee--e----ecCCC
Q 022283 153 KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADV------------EVQSPF---AQ--L----DIPRI 211 (299)
Q Consensus 153 kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGl~v------------~~~~~~---~~--~----~~p~~ 211 (299)
+|||++|.. .|.|.+|||+||+||++++||+||++||||+++ ....++ +. + ..+..
T Consensus 140 ~vLl~~r~~---~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~~~~~~~~~~~l~~~l~~l~~~~g~~vy~~~~~dpr~ 216 (292)
T 1q33_A 140 QFVAIKRKD---CGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRN 216 (292)
T ss_dssp EEEEEECTT---TCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCTTC
T ss_pred EEEEEEecC---CCcEeCCCcccCCCCCHHHHHHHHHHHHhCCccccccccchhhHHHHHHHhhcccceeecccccCCCC
Confidence 699999863 489999999999999999999999999999983 112222 11 1 11211
Q ss_pred ----CEEEEEEEEEecCCC------CCCCCcceeeEEecCCCCCCCCCCCccHHHHHHHHHHHH
Q 022283 212 ----GQIYIIFLAKLKRPH------FSPGPESSECRLFALDEIPFDSLAFSSISVTLQLFIDDI 265 (299)
Q Consensus 212 ----~~~~~~f~a~~~~~~------~~~~~E~~~~~W~~~deL~~~~laf~s~~~~l~~~l~~~ 265 (299)
....++|.+....++ +..++|+.+++|+++++++ .+ ++....+|+++++..
T Consensus 217 ~d~~~~~~~~f~~~~~~g~~~~~~~~~~~~E~~~~~W~~~del~--~L-~~~h~~il~~~~~~~ 277 (292)
T 1q33_A 217 TDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKL--KL-YASHSQFIKLVAEKR 277 (292)
T ss_dssp CSSEEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTC--CC-STTHHHHHHHHHHHH
T ss_pred CcccEEEEEEEEEEeCCCccccccccCCCCccceEEEEEcccCc--cc-CHhHHHHHHHHHHHh
Confidence 234466766654332 2345788999999999998 45 556688888888664
No 72
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=99.43 E-value=2.2e-13 Score=122.59 Aligned_cols=126 Identities=13% Similarity=0.126 Sum_probs=87.2
Q ss_pred EEEEEE-EeeCCEEEEEEeecCC--CCCceeec-eEEeeCC------CC---HHHHHHHHHHHHhCCceee-----ccce
Q 022283 142 MVVGCL-IEHDKKILLCKRKIEP--SYGLWTLP-AGYMEIG------ES---AAEGAIRETWEEARADVEV-----QSPF 203 (299)
Q Consensus 142 ~vV~~i-v~~~~kILL~rr~~~p--~~g~w~lP-gG~VE~G------Es---~eeAa~REv~EEtGl~v~~-----~~~~ 203 (299)
.++.++ ++.+++|||+||+... .+|.|++| ||++++| |+ +++||+||++|||||.+.. +.++
T Consensus 60 ~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~~l~~l 139 (235)
T 2dho_A 60 RAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYL 139 (235)
T ss_dssp EEEEEEEECTTCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGSCGGGSEEE
T ss_pred EEEEEEEEcCCCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCccccChhhcEEE
Confidence 344444 4557899999987542 36899999 5999999 88 5999999999999998752 4455
Q ss_pred eeeec--CCC-----CEEEEEEEEEecCCCCCCC-CcceeeEEecCCCCCC-------CCCCC-ccHHHHHHHHHHHHHc
Q 022283 204 AQLDI--PRI-----GQIYIIFLAKLKRPHFSPG-PESSECRLFALDEIPF-------DSLAF-SSISVTLQLFIDDIRM 267 (299)
Q Consensus 204 ~~~~~--p~~-----~~~~~~f~a~~~~~~~~~~-~E~~~~~W~~~deL~~-------~~laf-~s~~~~l~~~l~~~~~ 267 (299)
+.+.+ +.. +....+|.+... +++.++ +|+.+++|++++++.. .+..| |....++++|+..+-.
T Consensus 140 ~~~~y~~~~~~~~~~~e~~~vf~~~~~-~~~~~~~~Ev~~~~wv~~~el~~~l~~~~~~~~~ftp~~~~i~~~~L~~ww~ 218 (235)
T 2dho_A 140 TRIHYKAQSDGIWGEHEIDYILLVRMN-VTLNPDPNEIKSYCYVSKEELKELLKKAASGEIKITPWFKIIAATFLFKWWD 218 (235)
T ss_dssp EEEEEEEECSSSBEEEEEEEEEEEECC-CCCCCCTTTEEEEEEECHHHHHHHHHHHHTTSSCBCHHHHHHHHHTHHHHHT
T ss_pred EEEEEeccCCCccceeEEEEEEEEEEC-CCCcCChHHEEEEEEEcHHHHHHHHhhccCCCcEECHhHHHHHHHHHHHHHh
Confidence 54432 211 224466777753 445555 8899999999999863 11123 4456778888887765
Q ss_pred C
Q 022283 268 G 268 (299)
Q Consensus 268 g 268 (299)
+
T Consensus 219 ~ 219 (235)
T 2dho_A 219 N 219 (235)
T ss_dssp T
T ss_pred h
Confidence 4
No 73
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=99.43 E-value=1.6e-13 Score=124.29 Aligned_cols=126 Identities=13% Similarity=0.079 Sum_probs=87.0
Q ss_pred EEEEEEE-eeCCEEEEEEeecCC--CCCceeece-EEeeCC------CCH---HHHHHHHHHHHhCCceee-----ccce
Q 022283 142 MVVGCLI-EHDKKILLCKRKIEP--SYGLWTLPA-GYMEIG------ESA---AEGAIRETWEEARADVEV-----QSPF 203 (299)
Q Consensus 142 ~vV~~iv-~~~~kILL~rr~~~p--~~g~w~lPg-G~VE~G------Es~---eeAa~REv~EEtGl~v~~-----~~~~ 203 (299)
.++.+++ +.+++|||+||+... .+|+|++|+ |++++| |++ ++||+||++|||||.+.. +.++
T Consensus 71 ~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~~v~~~~l~~l 150 (246)
T 2pny_A 71 RAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVFM 150 (246)
T ss_dssp EEEEEEEECTTCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTTTCCGGGSEEE
T ss_pred EEEEEEEEeCCCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCccccCccccEEE
Confidence 3444444 557899999987542 378999995 999999 887 999999999999998652 3455
Q ss_pred eeeec--CCC-----CEEEEEEEEEecCCCCCCC-CcceeeEEecCCCCCC-------CCCC-CccHHHHHHHHHHHHHc
Q 022283 204 AQLDI--PRI-----GQIYIIFLAKLKRPHFSPG-PESSECRLFALDEIPF-------DSLA-FSSISVTLQLFIDDIRM 267 (299)
Q Consensus 204 ~~~~~--p~~-----~~~~~~f~a~~~~~~~~~~-~E~~~~~W~~~deL~~-------~~la-f~s~~~~l~~~l~~~~~ 267 (299)
+.+.+ +.. +....+|.+... +++.++ +|+.+++|++++++.. .+.. .|..+.++++|+..+-.
T Consensus 151 ~~~~y~~~~~~~~~~~e~~~vf~~~~~-~~~~~~~~Ev~~~~wv~~eel~~~l~~~~~~~~~ftp~~~~i~~~~l~~ww~ 229 (246)
T 2pny_A 151 TIYHHKAKSDRIWGEHEICYLLLVRKN-VTLNPDPSETKSILYLSQEELWELLEREARGEVKVTPWLRTIAERFLYRWWP 229 (246)
T ss_dssp EEEEEEEESSSSBEEEEEEEEEEEECC-CCCCCCTTTEEEEEEECHHHHHHHHHHHHHTSSCBCHHHHHHHHHTHHHHGG
T ss_pred EEEEEEecCCCceeeeEEEEEEEEEEC-CCCCCChHHeeEEEEEeHHHHHHHHHhccCCCceECHhHHHHHHHHHHHHHH
Confidence 54332 211 234456777653 445565 8999999999999863 1112 34456777888887754
Q ss_pred C
Q 022283 268 G 268 (299)
Q Consensus 268 g 268 (299)
+
T Consensus 230 ~ 230 (246)
T 2pny_A 230 H 230 (246)
T ss_dssp G
T ss_pred h
Confidence 3
No 74
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}
Probab=99.22 E-value=1.9e-11 Score=113.74 Aligned_cols=111 Identities=16% Similarity=0.182 Sum_probs=76.0
Q ss_pred EEEEEEeecCCC--CCce-eeceEEeeCCCCHHHHHHHHHHHHhCCceeecc---ceeeeec----CC--CCEEEEEEEE
Q 022283 153 KILLCKRKIEPS--YGLW-TLPAGYMEIGESAAEGAIRETWEEARADVEVQS---PFAQLDI----PR--IGQIYIIFLA 220 (299)
Q Consensus 153 kILL~rr~~~p~--~g~w-~lPgG~VE~GEs~eeAa~REv~EEtGl~v~~~~---~~~~~~~----p~--~~~~~~~f~a 220 (299)
++||.||+.... +|+| .++||++++|||+++||+||++||+||.+..+. ..+...+ +. .+..+.+|.+
T Consensus 134 ~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~l~~~g~i~y~~~~~~G~~~E~~~vy~~ 213 (300)
T 3dup_A 134 HLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAITYCMESPAGIKPDTLFLYDL 213 (300)
T ss_dssp EEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTCEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChhhhhhccccceEEEEEecCCCeEEEEEEEEEE
Confidence 899999986543 8999 588999999999999999999999999875432 2222221 21 1234566777
Q ss_pred EecCCC-CCCC-CcceeeEEecCCCCCC-----CCCCCccHHHHHHHHHHH
Q 022283 221 KLKRPH-FSPG-PESSECRLFALDEIPF-----DSLAFSSISVTLQLFIDD 264 (299)
Q Consensus 221 ~~~~~~-~~~~-~E~~~~~W~~~deL~~-----~~laf~s~~~~l~~~l~~ 264 (299)
.+..+. +.++ +|+.+++|++++|+.. ..+. +....++.+|+.+
T Consensus 214 ~l~~~~~p~~~~~EV~~~~~v~~~El~~~l~~pg~F~-p~~~lV~ldfl~R 263 (300)
T 3dup_A 214 ALPEDFRPHNTDGEMADFMLWPAAKVVEAVRTTEAFK-FNVNLTVIDFAIR 263 (300)
T ss_dssp ECCTTCCCCCTTSSEEEEEEEEHHHHHHHHHHCCCBC-TTHHHHHHHHHHH
T ss_pred EecCCCcCCCCchHhheEEEECHHHHHHHHhcCCCcC-ccHHHHHHHHHHH
Confidence 665432 3444 8999999999998742 2333 3334445566544
No 75
>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}
Probab=99.20 E-value=6.6e-11 Score=106.34 Aligned_cols=92 Identities=18% Similarity=0.101 Sum_probs=65.5
Q ss_pred EEEEEEeecCCC--CCceeeceEEeeCCCC--------------------HHHHHHHHHHHHhCCceeeccc--------
Q 022283 153 KILLCKRKIEPS--YGLWTLPAGYMEIGES--------------------AAEGAIRETWEEARADVEVQSP-------- 202 (299)
Q Consensus 153 kILL~rr~~~p~--~g~w~lPgG~VE~GEs--------------------~eeAa~REv~EEtGl~v~~~~~-------- 202 (299)
+|||+||..... +|.|.||||.||+||+ +.+||+||++|||||.+....-
T Consensus 25 ~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~Gl~l~~~~~~~~~~~~~ 104 (232)
T 3qsj_A 25 EVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEIGWLLAVRDGEGTKMDTP 104 (232)
T ss_dssp EEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHHSCCCSEECTTCCBCCSC
T ss_pred EEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHHhCceeccccccCcccChh
Confidence 899999987653 6999999999999997 5899999999999997632110
Q ss_pred --------------------------------eeeeec--CC--CC-EEEEEEEEEecCCC-CCCC-CcceeeEEecCCC
Q 022283 203 --------------------------------FAQLDI--PR--IG-QIYIIFLAKLKRPH-FSPG-PESSECRLFALDE 243 (299)
Q Consensus 203 --------------------------------~~~~~~--p~--~~-~~~~~f~a~~~~~~-~~~~-~E~~~~~W~~~de 243 (299)
.-...| |. +. ....+|.+.+.... ...+ .|+.+++|+++++
T Consensus 105 ~~~~~r~~l~~~~~~f~~~~~~~~l~~~~~~L~~~arWiTP~~~~rRfdT~FFla~lpq~~~v~~d~~E~~~~~W~~p~e 184 (232)
T 3qsj_A 105 LAPDEQADLCKGGDALSAWLSARGLAFDLGLLRRIGRFVTPPTQPVRFDTRFFLCVGQHLGEPRLHGAELDAALWTPARD 184 (232)
T ss_dssp CCHHHHHHHTTCTTHHHHHHHTTTCEEBGGGCEEEEEEECCTTSSSEEEEEEEEEECSSCCCCCCCSSSEEEEEEEEHHH
T ss_pred hHHHHHHHHHcCchhHHHHHHHCCCccChhhceeeEEEcCCcCCceeEEEEEEEEECCCCCCCCCCCCceEEEEEEcHHH
Confidence 000112 21 12 44567777766322 1333 8999999999998
Q ss_pred C
Q 022283 244 I 244 (299)
Q Consensus 244 L 244 (299)
+
T Consensus 185 a 185 (232)
T 3qsj_A 185 M 185 (232)
T ss_dssp H
T ss_pred H
Confidence 7
No 76
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}
Probab=99.05 E-value=6.1e-11 Score=103.32 Aligned_cols=90 Identities=14% Similarity=0.077 Sum_probs=65.7
Q ss_pred EEEEEEeecCCCCCceeeceEEeeCCC-CHHHHHHHHHHHHhCC-ceeeccceeeeecCCC-CEEEEEEEEEecCCCC--
Q 022283 153 KILLCKRKIEPSYGLWTLPAGYMEIGE-SAAEGAIRETWEEARA-DVEVQSPFAQLDIPRI-GQIYIIFLAKLKRPHF-- 227 (299)
Q Consensus 153 kILL~rr~~~p~~g~w~lPgG~VE~GE-s~eeAa~REv~EEtGl-~v~~~~~~~~~~~p~~-~~~~~~f~a~~~~~~~-- 227 (299)
.|||..|. .|.|+||||+||+|| |+++|+.||+.||+|+ .+....++.+..+.++ ...+.+|.++...+++
T Consensus 45 ~iLmQ~R~----~G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y~~s~~~~yp~~V~LHfY~crl~~Ge~~~ 120 (214)
T 3kvh_A 45 SVLMQMRF----DGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSSHLTEGPHRVVAHLYARQLTLEQLHA 120 (214)
T ss_dssp EEEEEEET----TSCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGEEEEEEC----CEEEEEEEEECCHHHHHH
T ss_pred eEEEeeee----CCEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeeeEEEEeccCCCEEEEEEEEEEeeCCccch
Confidence 56666654 699999999999999 9999999999999997 6888888887766554 6778889998876541
Q ss_pred ------C---CCCcceeeEEecCCCCCC
Q 022283 228 ------S---PGPESSECRLFALDEIPF 246 (299)
Q Consensus 228 ------~---~~~E~~~~~W~~~deL~~ 246 (299)
. .+-|+....-+|+-.+.+
T Consensus 121 lE~~A~~A~d~G~EvlGlvRVPlytl~D 148 (214)
T 3kvh_A 121 VEISAVHSRDHGLEVLGLVRVPLYTQKD 148 (214)
T ss_dssp HHHHHHTSTTBTTTEEEEEEECCCBCTT
T ss_pred hhhcccCCcccCceecceEEeeeEEecc
Confidence 1 125666666777766653
No 77
>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A
Probab=98.88 E-value=2.6e-09 Score=93.80 Aligned_cols=63 Identities=25% Similarity=0.331 Sum_probs=47.7
Q ss_pred cEEEEEEE-eeCC--EEEEEEeecCCCCCceeeceEEeeCCCCHHHHHHHHHHHHhC------Cceeeccceeeee
Q 022283 141 KMVVGCLI-EHDK--KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEAR------ADVEVQSPFAQLD 207 (299)
Q Consensus 141 ~~vV~~iv-~~~~--kILL~rr~~~p~~g~w~lPgG~VE~GEs~eeAa~REv~EEtG------l~v~~~~~~~~~~ 207 (299)
..|+++++ .+.+ +|||+|+. .+.|.+|||.+|+||+.++|+.||+.||+| .+++...+++.+-
T Consensus 59 ~sV~avil~~~~~~phVLLlq~~----~~~f~LPGGkle~gE~~~eaL~REL~EELg~~~~~~~~~eIge~lg~ww 130 (208)
T 3bho_A 59 RTVEGVLIVHEHRLPHVLLLQLG----TTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNWW 130 (208)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEE----TTEEECSEEECCTTCCHHHHHHHHHHHHHCCCC-----CEEEEEEEEEE
T ss_pred eEEEEEEEEcCCCCcEEEEEEcC----CCcEECCCcccCCCCCHHHHHHHHHHHHhCCCcCCCccEEEhheEEEEe
Confidence 34444444 3444 79999974 468999999999999999999999999999 4556666777643
No 78
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.59 E-value=2.3e-05 Score=53.64 Aligned_cols=33 Identities=27% Similarity=0.555 Sum_probs=27.2
Q ss_pred hcCCCCcCCCCCCcccccCCCCcceeecCCCCceeec
Q 022283 102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (299)
Q Consensus 102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (299)
+.++|||.||+...+. +...+.+|+.||+++|.
T Consensus 17 ~~~k~CP~CG~~~fm~----~~~~R~~C~kCG~t~~~ 49 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMA----DHGDRWACGKCGYTEWK 49 (50)
T ss_dssp CSSEECSSSCSSCEEE----ECSSEEECSSSCCEEEC
T ss_pred EecccCCCCCCceEEe----cCCCeEECCCCCCEEEC
Confidence 4689999999987665 33568999999999985
No 79
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=96.35 E-value=0.0036 Score=49.67 Aligned_cols=38 Identities=13% Similarity=0.306 Sum_probs=30.4
Q ss_pred hcCCCCcCCCCCCcccccCCCCcceeecCCCCceeecC
Q 022283 102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQN 139 (299)
Q Consensus 102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~ 139 (299)
..++|||.||.-|......+++..+..|..|++.++..
T Consensus 2 ~~m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (113)
T 3h0g_I 2 SNFQYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAA 39 (113)
T ss_dssp -CCCCCSSSCCCCEECCCTTTCCCCEECSSSCCEECCS
T ss_pred CcceeCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcC
Confidence 45799999999998875544466789999999988754
No 80
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=96.15 E-value=0.0032 Score=43.71 Aligned_cols=35 Identities=29% Similarity=0.557 Sum_probs=26.4
Q ss_pred hcCCCCcCCCCCCcccccCCCCcceeecCCCCceeecCC
Q 022283 102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNP 140 (299)
Q Consensus 102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p 140 (299)
+..+|||.||.-+... ....+..|..||.+.|-.+
T Consensus 16 ~~~~fCPkCG~~~~ma----~~~dr~~C~kCgyt~~~~~ 50 (55)
T 2k4x_A 16 RKHRFCPRCGPGVFLA----EHADRYSCGRCGYTEFKKA 50 (55)
T ss_dssp CSSCCCTTTTTTCCCE----ECSSEEECTTTCCCEECCC
T ss_pred EccccCcCCCCceeEe----ccCCEEECCCCCCEEEeCc
Confidence 4579999999976544 2245899999999887543
No 81
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=94.30 E-value=0.022 Score=46.45 Aligned_cols=36 Identities=14% Similarity=0.375 Sum_probs=27.5
Q ss_pred hcCCCCcCCCCCCcccccCCCCcceeecCCCCceee
Q 022283 102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (299)
Q Consensus 102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (299)
..++|||.||.-|.+......+..+..|+.|++..-
T Consensus 22 ~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~~ 57 (133)
T 3qt1_I 22 TTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEE 57 (133)
T ss_dssp CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBCC
T ss_pred cCCeeCCCCCCEeeECccCCCceeEEECCCCCCcEE
Confidence 568999999999987632222456899999998664
No 82
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=93.14 E-value=0.037 Score=49.26 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=28.0
Q ss_pred HHHHHH-hhhhcCCCCcCCCCCCcccccCCCCcceeecCCCCceee
Q 022283 93 AAVHSA-GNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (299)
Q Consensus 93 ~a~~l~-~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (299)
.|+=|. .|...+.|||.||+......+.+.----+.|+.|+..+-
T Consensus 22 ~aRVLTE~Wv~~n~yCPnCG~~~l~~f~nN~PVaDF~C~~C~EeyE 67 (257)
T 4esj_A 22 KARILTEDWVYRQSYCPNCGNNPLNHFENNRPVADFYCNHCSEEFE 67 (257)
T ss_dssp HHHHHHHHHHHHHCCCTTTCCSSCEEC----CCCEEECTTTCCEEE
T ss_pred eehhhhHHHHHHCCcCCCCCChhhhhccCCCcccccccCCcchhhe
Confidence 344443 699999999999995332222221222379999987654
No 83
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=92.15 E-value=0.073 Score=42.60 Aligned_cols=38 Identities=13% Similarity=0.358 Sum_probs=27.7
Q ss_pred hcCCCCcCCCCCCcccccCCCCcceeecCCCCceeecC
Q 022283 102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQN 139 (299)
Q Consensus 102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~ 139 (299)
...+|||.||.-|...........+..|..||+..-..
T Consensus 2 ~~~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (122)
T 1twf_I 2 TTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAG 39 (122)
T ss_dssp CCCCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEECS
T ss_pred CCCCcccccCccCcccccCcCCCCEEECCcCCCeeecC
Confidence 35789999999998663211345789999999877533
No 84
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=89.22 E-value=0.21 Score=33.31 Aligned_cols=31 Identities=19% Similarity=0.523 Sum_probs=21.9
Q ss_pred CCCCcCCCC-CCcccccCCCCcceeecCCCCceeec
Q 022283 104 ISFCQWCGG-QTKHEVPHGEEKMRAICTVCGKIAYQ 138 (299)
Q Consensus 104 ~~fC~~CG~-~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (299)
...||.||+ ++... .+....+|+.||.++-.
T Consensus 5 ~~~CP~C~~~~l~~d----~~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 5 QKVCPACESAELIYD----PERGEIVCAKCGYVIEE 36 (50)
T ss_dssp CCSCTTTSCCCEEEE----TTTTEEEESSSCCBCCC
T ss_pred cEeCcCCCCcceEEc----CCCCeEECcccCCcccc
Confidence 457999999 65543 23346899999986543
No 85
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=88.70 E-value=0.22 Score=35.86 Aligned_cols=32 Identities=28% Similarity=0.555 Sum_probs=23.5
Q ss_pred hcCCCCcCCCCCCcccccCCCCcceeecCCCCceeec
Q 022283 102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (299)
Q Consensus 102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (299)
...--||.|++++... ..+...+|+.|| ..||
T Consensus 6 L~iL~CP~ck~~L~~~----~~~~~LiC~~cg-~~YP 37 (68)
T 2hf1_A 6 LEILVCPLCKGPLVFD----KSKDELICKGDR-LAFP 37 (68)
T ss_dssp EEECBCTTTCCBCEEE----TTTTEEEETTTT-EEEE
T ss_pred hhheECCCCCCcCeEe----CCCCEEEcCCCC-cEec
Confidence 3445799999999876 334578999998 4454
No 86
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=88.51 E-value=0.23 Score=35.74 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=24.8
Q ss_pred hhhcCCCCcCCCCCCcccccCCCCcceeecCCCCceeec
Q 022283 100 NVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (299)
Q Consensus 100 w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (299)
|....--||.|++++... ......+|+.||. .||
T Consensus 4 ~LL~iL~CP~ck~~L~~~----~~~~~LiC~~cg~-~YP 37 (68)
T 2jr6_A 4 KFLDILVCPVTKGRLEYH----QDKQELWSRQAKL-AYP 37 (68)
T ss_dssp SSSCCCBCSSSCCBCEEE----TTTTEEEETTTTE-EEE
T ss_pred HHhhheECCCCCCcCeEe----CCCCEEEcCCCCc-Eec
Confidence 344556799999999876 3345789999984 454
No 87
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=88.26 E-value=0.21 Score=36.12 Aligned_cols=34 Identities=21% Similarity=0.577 Sum_probs=24.8
Q ss_pred hhhcCCCCcCCCCCCcccccCCCCcceeecCCCCceeec
Q 022283 100 NVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (299)
Q Consensus 100 w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (299)
|....--||.|++++... ..+...+|+.|| ..||
T Consensus 4 ~LL~iL~CP~ck~~L~~~----~~~~~LiC~~cg-~~YP 37 (70)
T 2js4_A 4 RLLDILVCPVCKGRLEFQ----RAQAELVCNADR-LAFP 37 (70)
T ss_dssp CCCCCCBCTTTCCBEEEE----TTTTEEEETTTT-EEEE
T ss_pred HHhhheECCCCCCcCEEe----CCCCEEEcCCCC-ceec
Confidence 344556799999998876 334578999998 4454
No 88
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=86.36 E-value=0.52 Score=33.92 Aligned_cols=34 Identities=32% Similarity=0.574 Sum_probs=25.2
Q ss_pred hhhcCCCCcCCCCCCcccccCCCCcceeecCCCCceeec
Q 022283 100 NVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (299)
Q Consensus 100 w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (299)
|....--||.|++++... ..+...+|+.|| ..||
T Consensus 4 ~LLeiL~CP~ck~~L~~~----~~~~~LiC~~cg-~~YP 37 (69)
T 2pk7_A 4 KLLDILACPICKGPLKLS----ADKTELISKGAG-LAYP 37 (69)
T ss_dssp CGGGTCCCTTTCCCCEEC----TTSSEEEETTTT-EEEE
T ss_pred HHHhheeCCCCCCcCeEe----CCCCEEEcCCCC-cEec
Confidence 445567899999999875 334578999998 4454
No 89
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=85.68 E-value=0.24 Score=37.04 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=23.6
Q ss_pred hhhcCCCCcCCCCCCcccccCCCCcceeecCCCCcee
Q 022283 100 NVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (299)
Q Consensus 100 w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (299)
-+...-.||.||+.+... .+-..+.|+.||...
T Consensus 23 ~q~~~y~Cp~CG~~~v~r----~atGiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 23 EMNEDHACPNCGEDRVDR----QGTGIWQCSYCDYKF 55 (83)
T ss_dssp HHHSCEECSSSCCEEEEE----EETTEEEETTTCCEE
T ss_pred hccccCcCCCCCCcceec----cCCCeEECCCCCCEe
Confidence 344566899999976555 233478999999863
No 90
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=85.19 E-value=0.55 Score=32.53 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=22.0
Q ss_pred hhcCCCCcCCCCC-CcccccCCCCcceeecCCCCceee
Q 022283 101 VLKISFCQWCGGQ-TKHEVPHGEEKMRAICTVCGKIAY 137 (299)
Q Consensus 101 ~~~~~fC~~CG~~-~~~~~~~~~~~~~~~C~~Cg~~~y 137 (299)
......||.||.. +... ....-.+|..||.+.=
T Consensus 8 ll~~~~Cp~C~~~~lv~D----~~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 8 ALPRVTCPNHPDAILVED----YRAGDMICPECGLVVG 41 (58)
T ss_dssp CCSCCSBTTBSSSCCEEC----SSSCCEECTTTCCEEC
T ss_pred ccccccCcCCCCCceeEe----CCCCeEEeCCCCCEEe
Confidence 3455689999984 3322 2334589999997654
No 91
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=83.81 E-value=0.34 Score=35.05 Aligned_cols=29 Identities=21% Similarity=0.499 Sum_probs=21.5
Q ss_pred CCCcCCCCCCcccccCCCCcceeecCCCCc-eeec
Q 022283 105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGK-IAYQ 138 (299)
Q Consensus 105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~-~~y~ 138 (299)
--|+.||...... .+....|+.||. +.|.
T Consensus 29 Y~C~~CG~~~e~~-----~~d~irCp~CG~RILyK 58 (70)
T 1twf_L 29 YICAECSSKLSLS-----RTDAVRCKDCGHRILLK 58 (70)
T ss_dssp EECSSSCCEECCC-----TTSTTCCSSSCCCCCBC
T ss_pred EECCCCCCcceeC-----CCCCccCCCCCceEeEe
Confidence 3599999997664 223468999998 6674
No 92
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=83.27 E-value=0.55 Score=37.92 Aligned_cols=32 Identities=16% Similarity=0.357 Sum_probs=25.9
Q ss_pred hcCCCCcCCCCCCcccccCCCCcceeecCCCCceeec
Q 022283 102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (299)
Q Consensus 102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (299)
....-||+|++...+. ++.-..||.|++.+-+
T Consensus 25 ~~lP~CP~C~seytYe-----Dg~l~vCPeC~hEW~~ 56 (138)
T 2akl_A 25 STLPPCPQCNSEYTYE-----DGALLVCPECAHEWSP 56 (138)
T ss_dssp CCSCCCTTTCCCCCEE-----CSSSEEETTTTEEECT
T ss_pred ccCCCCCCCCCcceEe-----cCCeEECCccccccCC
Confidence 3568899999997764 4567999999999854
No 93
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=82.01 E-value=1 Score=32.25 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=26.5
Q ss_pred hhhhcCCCCcCCCCCCcccccCCCCcceeecCCCCceeec
Q 022283 99 GNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (299)
Q Consensus 99 ~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (299)
.|....--||.|++++... ..+...+|+.|| ..||
T Consensus 5 ~~LLeiL~CP~ck~~L~~~----~~~g~LvC~~c~-~~YP 39 (67)
T 2jny_A 5 PQLLEVLACPKDKGPLRYL----ESEQLLVNERLN-LAYR 39 (67)
T ss_dssp GGGTCCCBCTTTCCBCEEE----TTTTEEEETTTT-EEEE
T ss_pred HHHHHHhCCCCCCCcCeEe----CCCCEEEcCCCC-cccc
Confidence 4566677899999999876 334578999998 4554
No 94
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=80.52 E-value=0.67 Score=34.40 Aligned_cols=31 Identities=26% Similarity=0.475 Sum_probs=22.0
Q ss_pred hcCCCCcCCCCCCcccccCCCCcceeecCCCCcee
Q 022283 102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (299)
Q Consensus 102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (299)
..++|||.|+..+... .+.....|+.|+...
T Consensus 23 ~~~~wCP~C~~~~~~~----~~~~~v~C~~C~~~F 53 (86)
T 2ct7_A 23 PKFLWCAQCSFGFIYE----REQLEATCPQCHQTF 53 (86)
T ss_dssp CCEECCSSSCCCEECC----CSCSCEECTTTCCEE
T ss_pred CCEeECcCCCchheec----CCCCceEeCCCCCcc
Confidence 4567899999987443 234567899998654
No 95
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=80.07 E-value=0.65 Score=33.63 Aligned_cols=25 Identities=28% Similarity=0.728 Sum_probs=19.0
Q ss_pred CcCCCCCCcccccCCCCcceeecCCCCceee
Q 022283 107 CQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (299)
Q Consensus 107 C~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (299)
|| ||...... ++.....|+ ||...-
T Consensus 7 C~-C~~~~~~~----~~~kT~~C~-CG~~~~ 31 (71)
T 1gh9_A 7 CD-CGRALYSR----EGAKTRKCV-CGRTVN 31 (71)
T ss_dssp ET-TSCCEEEE----TTCSEEEET-TTEEEE
T ss_pred CC-CCCEEEEc----CCCcEEECC-CCCeee
Confidence 89 99987665 456678898 997654
No 96
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=80.01 E-value=0.54 Score=32.93 Aligned_cols=22 Identities=23% Similarity=0.687 Sum_probs=17.0
Q ss_pred cCCCCcCCCCCCcccccCCCCcceeecCCCC
Q 022283 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCG 133 (299)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg 133 (299)
....||.||...... ..|+.||
T Consensus 29 ~l~~c~~cGe~~~~H---------~vc~~CG 50 (60)
T 3v2d_5 29 TLVPCPECKAMKPPH---------TVCPECG 50 (60)
T ss_dssp CCEECTTTCCEECTT---------SCCTTTC
T ss_pred ceeECCCCCCeecce---------EEcCCCC
Confidence 356899999975443 5799999
No 97
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=79.69 E-value=0.62 Score=32.63 Aligned_cols=23 Identities=30% Similarity=0.797 Sum_probs=17.3
Q ss_pred cCCCCcCCCCCCcccccCCCCcceeecCCCCc
Q 022283 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGK 134 (299)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~ 134 (299)
...-||.||..... ...|+.||+
T Consensus 29 ~l~~c~~cG~~~~p---------H~vc~~CG~ 51 (60)
T 2zjr_Z 29 NLTECPQCHGKKLS---------HHICPNCGY 51 (60)
T ss_dssp CCEECTTTCCEECT---------TBCCTTTCB
T ss_pred CceECCCCCCEeCC---------ceEcCCCCc
Confidence 45679999998433 368999993
No 98
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=78.73 E-value=0.6 Score=34.74 Aligned_cols=39 Identities=28% Similarity=0.561 Sum_probs=24.5
Q ss_pred hcCCCCcCCCCCCccc------ccCCC---------------CcceeecCCCCceeecCC
Q 022283 102 LKISFCQWCGGQTKHE------VPHGE---------------EKMRAICTVCGKIAYQNP 140 (299)
Q Consensus 102 ~~~~fC~~CG~~~~~~------~~~~~---------------~~~~~~C~~Cg~~~y~~p 140 (299)
..+.-||.||+++.-. ...+. .+....||.||...|-+.
T Consensus 6 ~~~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~~ 65 (95)
T 2k5c_A 6 HHMAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGKT 65 (95)
T ss_dssp --CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETTS
T ss_pred cccccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhccc
Confidence 3455799999997432 00000 125689999999999653
No 99
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=77.37 E-value=1.2 Score=37.59 Aligned_cols=31 Identities=19% Similarity=0.473 Sum_probs=24.9
Q ss_pred cCCCCcCCCCCCcccccCCCCcceeecCCCCceeecC
Q 022283 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQN 139 (299)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~ 139 (299)
-..+|+.||.+|.+. . ....||.||......
T Consensus 139 v~a~~~~~g~~m~~~----~--~~~~cp~~g~~e~RK 169 (179)
T 3m7n_A 139 LRALCSNCKTEMVRE----G--DILKCPECGRVEKRK 169 (179)
T ss_dssp EECBCTTTCCBCEEC----S--SSEECSSSCCEECCC
T ss_pred EEecccccCCceEEC----C--CEEECCCCCCEEEEe
Confidence 467899999999775 2 579999999887654
No 100
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=76.68 E-value=1.4 Score=29.22 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=21.1
Q ss_pred CCcCCCCCCcccccCCCCcceeecCCCCceeec
Q 022283 106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (299)
Q Consensus 106 fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (299)
-|.+||+.+..... +--.--.||-||+..+-
T Consensus 5 ~C~rCg~~fs~~el--~~lP~IrCpyCGyrii~ 35 (48)
T 4ayb_P 5 RCGKCWKTFTDEQL--KVLPGVRCPYCGYKIIF 35 (48)
T ss_dssp CCCCTTTTCCCCCS--CCCSSSCCTTTCCSCEE
T ss_pred EeeccCCCccHHHH--hhCCCcccCccCcEEEE
Confidence 49999999755421 12234689999987764
No 101
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=76.30 E-value=1.1 Score=41.48 Aligned_cols=34 Identities=18% Similarity=0.381 Sum_probs=22.4
Q ss_pred cCCCCcCCCCCCcccccC--C--CCcceeecCCCCcee
Q 022283 103 KISFCQWCGGQTKHEVPH--G--EEKMRAICTVCGKIA 136 (299)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~--~--~~~~~~~C~~Cg~~~ 136 (299)
...|||.||+.-...... | ++....+|.-|+..+
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W 218 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEW 218 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEE
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEE
Confidence 468999999996543221 1 334467888888665
No 102
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=75.88 E-value=1.2 Score=31.48 Aligned_cols=30 Identities=27% Similarity=0.563 Sum_probs=22.5
Q ss_pred cCCCCcCCCCCCcccccCCCCcceeecCCCCceee
Q 022283 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (299)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (299)
..=-|+.||...... .+....|+.||....
T Consensus 20 v~Y~C~~Cg~~~~l~-----~~~~iRC~~CG~RIL 49 (63)
T 3h0g_L 20 MIYLCADCGARNTIQ-----AKEVIRCRECGHRVM 49 (63)
T ss_dssp CCCBCSSSCCBCCCC-----SSSCCCCSSSCCCCC
T ss_pred eEEECCCCCCeeecC-----CCCceECCCCCcEEE
Confidence 445699999998764 345689999997653
No 103
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=74.86 E-value=0.82 Score=33.98 Aligned_cols=6 Identities=33% Similarity=1.220 Sum_probs=2.3
Q ss_pred ecCCCC
Q 022283 128 ICTVCG 133 (299)
Q Consensus 128 ~C~~Cg 133 (299)
.||+||
T Consensus 33 fCPeCg 38 (81)
T 2jrp_A 33 LCPDCR 38 (81)
T ss_dssp ECSSSC
T ss_pred cCcchh
Confidence 344333
No 104
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=74.43 E-value=1 Score=34.41 Aligned_cols=29 Identities=28% Similarity=0.656 Sum_probs=22.2
Q ss_pred hcCCCCcCCCCCCcccccCCCCcceeecCCCCceee
Q 022283 102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (299)
Q Consensus 102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (299)
..+..|++||...... .+..|..||+..+
T Consensus 14 KtH~lCrRCG~~sfH~-------qK~~CgkCGYpa~ 42 (97)
T 2zkr_2 14 KTHTLCRRCGSKAYHL-------QKSTCGKCGYPAK 42 (97)
T ss_dssp CCEECCTTTCSSCEET-------TSCCBTTTCTTTS
T ss_pred CCCCcCCCCCCccCcC-------ccccCcccCCchH
Confidence 5678999999995432 3679999997554
No 105
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=73.21 E-value=1.7 Score=27.05 Aligned_cols=30 Identities=30% Similarity=0.500 Sum_probs=21.3
Q ss_pred CCcCCCCC-CcccccCCCCcceeecCCCCceee
Q 022283 106 FCQWCGGQ-TKHEVPHGEEKMRAICTVCGKIAY 137 (299)
Q Consensus 106 fC~~CG~~-~~~~~~~~~~~~~~~C~~Cg~~~y 137 (299)
-|+.||+| |.... .++..-..|..||...-
T Consensus 2 lC~~C~~peT~l~~--~~~~~~l~C~aCG~~~~ 32 (36)
T 1k81_A 2 ICRECGKPDTKIIK--EGRVHLLKCMACGAIRP 32 (36)
T ss_dssp CCSSSCSCEEEEEE--ETTEEEEEEETTTEEEE
T ss_pred CCcCCCCCCcEEEE--eCCcEEEEhhcCCCccc
Confidence 49999999 33332 24567788999998754
No 106
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=71.82 E-value=1 Score=35.58 Aligned_cols=38 Identities=13% Similarity=0.220 Sum_probs=25.2
Q ss_pred HHHHhhhhcCCCCcCCCCCCcccccCCCCcceeecCCCCcee
Q 022283 95 VHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (299)
Q Consensus 95 ~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (299)
..+..-....-+||.||.....+ .+-..+.|..|+...
T Consensus 51 kkiE~~q~akytCPfCGk~~vKR----~avGIW~C~~Cgk~f 88 (116)
T 3cc2_Z 51 AEIESEMNEDHACPNCGEDRVDR----QGTGIWQCSYCDYKF 88 (116)
T ss_dssp HHHHHHHHSCEECSSSCCEEEEE----EETTEEEETTTCCEE
T ss_pred HHHHHHhccCCcCCCCCCceeEe----cCceeEECCCCCCEE
Confidence 33434556677999999854333 233468999999764
No 107
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=70.99 E-value=1.6 Score=39.44 Aligned_cols=27 Identities=22% Similarity=0.554 Sum_probs=21.3
Q ss_pred CCCcCCCCCCcccccCCCCcceeecCCCC
Q 022283 105 SFCQWCGGQTKHEVPHGEEKMRAICTVCG 133 (299)
Q Consensus 105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg 133 (299)
+-|++||++...... .+..-..||.|.
T Consensus 246 ~pC~~CG~~I~~~~~--~gR~t~~CP~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVV--AGRGTHYCPRCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEE--TTEEEEECTTTC
T ss_pred CCCCCCCCeEEEEEE--CCCCeEECCCCC
Confidence 679999999876544 356778999997
No 108
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=70.43 E-value=1.5 Score=32.44 Aligned_cols=15 Identities=33% Similarity=0.806 Sum_probs=11.9
Q ss_pred cCCCCcCCCCCCccc
Q 022283 103 KISFCQWCGGQTKHE 117 (299)
Q Consensus 103 ~~~fC~~CG~~~~~~ 117 (299)
.-.|||.||.++-.+
T Consensus 29 ~k~FCp~CGn~TL~R 43 (79)
T 2con_A 29 NRVFCGHCGNKTLKK 43 (79)
T ss_dssp SCCSCSSSCCSCCEE
T ss_pred ccccccccCcccceE
Confidence 457999999997544
No 109
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=70.39 E-value=1.8 Score=38.85 Aligned_cols=28 Identities=21% Similarity=0.500 Sum_probs=21.9
Q ss_pred CCCcCCCCCCcccccCCCCcceeecCCCCc
Q 022283 105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGK 134 (299)
Q Consensus 105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~ 134 (299)
+-|++||++...... .+..-..||.|..
T Consensus 236 ~pC~~CG~~I~~~~~--~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 236 LPCPACGRPVERRVV--AGRGTHFCPTCQG 263 (266)
T ss_dssp SBCTTTCCBCEEEES--SSCEEEECTTTTT
T ss_pred CCCCCCCCEeeEEEE--CCCceEECCCCCC
Confidence 559999999876654 3567789999985
No 110
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=70.31 E-value=1.2 Score=38.22 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=23.4
Q ss_pred cCCCCcCCCCCCcccccCCCCcceeecCCCCceee
Q 022283 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (299)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (299)
..+.||+||....+.. ...|.+|-.|+.+++
T Consensus 112 ~~~~Cp~Cg~g~fma~----h~dR~~CGkC~~t~~ 142 (189)
T 2xzm_9 112 QQKGCPKCGPGIFMAK----HYDRHYCGKCHLTLK 142 (189)
T ss_dssp CSEECSTTCSSCEEEE----CSSCEEETTTCCCBC
T ss_pred ccccCCccCCCccccC----ccCCCccCCceeEEE
Confidence 4689999998866652 234789999998874
No 111
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=69.87 E-value=1.7 Score=39.04 Aligned_cols=27 Identities=19% Similarity=0.475 Sum_probs=21.1
Q ss_pred CCCcCCCCCCcccccCCCCcceeecCCCC
Q 022283 105 SFCQWCGGQTKHEVPHGEEKMRAICTVCG 133 (299)
Q Consensus 105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg 133 (299)
+-|++||++...... .+..-..||.|.
T Consensus 241 ~pC~~CG~~I~~~~~--~gR~t~~CP~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKH--AQRATFYCRQCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEE--TTEEEEECTTTC
T ss_pred CCCCCCCCEeeEEEE--CCCceEECCCCC
Confidence 459999999876654 356778999997
No 112
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=69.78 E-value=1.9 Score=35.51 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=25.3
Q ss_pred hcCCCCcC--CCCCCcccccCCCCcceeecCCCCceeec
Q 022283 102 LKISFCQW--CGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (299)
Q Consensus 102 ~~~~fC~~--CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (299)
+..+.||. ||.-.-+. +...|.+|-.||.+++-
T Consensus 116 ~~~~~c~~~~cg~g~fma----~h~~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 116 KLRRECSNPTCGAGVFLA----NHKDRLYCGKCHSVYKV 150 (152)
T ss_dssp CCSCBCCSTTSCSSSBEE----ECSSCEEESSSSSCCEE
T ss_pred ECcCcCCCccCCCceEec----ccCCCcccCCCceEEEe
Confidence 45789999 99976665 33458999999988753
No 113
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=69.62 E-value=1.8 Score=39.00 Aligned_cols=28 Identities=21% Similarity=0.572 Sum_probs=21.7
Q ss_pred CCCcCCCCCCcccccCCCCcceeecCCCCc
Q 022283 105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGK 134 (299)
Q Consensus 105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~ 134 (299)
+-|++||++...... .+..-..||.|..
T Consensus 243 ~pC~~CG~~I~~~~~--~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKV--AGRGTHFCPVCQQ 270 (271)
T ss_dssp SBCTTTCCBCEEEEE--TTEEEEECTTTSC
T ss_pred CCCCCCCCEeeEEEE--CCCceEECCCCCC
Confidence 459999999876654 3567789999974
No 114
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=69.13 E-value=1.8 Score=38.71 Aligned_cols=27 Identities=19% Similarity=0.442 Sum_probs=21.1
Q ss_pred CCCcCCCCCCcccccCCCCcceeecCCCC
Q 022283 105 SFCQWCGGQTKHEVPHGEEKMRAICTVCG 133 (299)
Q Consensus 105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg 133 (299)
+-|+.||++...... .+..-..||.|.
T Consensus 235 ~pC~~CG~~I~~~~~--~gR~t~~CP~CQ 261 (262)
T 1k3x_A 235 EPCERCGSIIEKTTL--SSRPFYWCPGCQ 261 (262)
T ss_dssp SBCTTTCCBCEEEEE--TTEEEEECTTTC
T ss_pred CCCCCCCCEeEEEEE--CCCCeEECCCCC
Confidence 459999999876654 356778999997
No 115
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=69.01 E-value=4.6 Score=34.01 Aligned_cols=48 Identities=15% Similarity=0.311 Sum_probs=30.3
Q ss_pred cCCCCcCCCCCCcccccCCCCcceeecCCCCceeecCCcE--EEEEEE-eeCCEEEEE
Q 022283 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKM--VVGCLI-EHDKKILLC 157 (299)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~--vV~~iv-~~~~kILL~ 157 (299)
-+.=||.|.+++... ......|+.|+.. ++|.. .+-+-| ++.|.+-+.
T Consensus 41 ~Y~ACp~CnKKV~~~-----~~g~~~CekC~~~--~~~~~RYil~~~i~D~TG~~wvt 91 (172)
T 3u50_C 41 YYYRCTCQGKSVLKY-----HGDSFFCESCQQF--INPQVHLMLRAFVQDSTGTIPVM 91 (172)
T ss_dssp EEEECTTSCCCEEEE-----TTTEEEETTTTEE--CCCEEEECEEEEEEETTEEEEEE
T ss_pred EehhchhhCCEeeeC-----CCCeEECCCCCCC--CCceEEEEEEEEEEeCCCCEEEE
Confidence 356799999997632 2347899999998 55553 333333 444554443
No 116
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=67.06 E-value=3.1 Score=30.15 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=22.3
Q ss_pred hhcCCCCcCCCCCCcccccCCCCcceeecCCCCcee
Q 022283 101 VLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (299)
Q Consensus 101 ~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (299)
+...-.||.||+....+ .+--...|..|+...
T Consensus 23 q~~ky~C~fCgk~~vkR----~a~GIW~C~~C~~~~ 54 (72)
T 3jyw_9 23 QHARYDCSFCGKKTVKR----GAAGIWTCSCCKKTV 54 (72)
T ss_dssp HHSCBCCSSCCSSCBSB----CSSSCBCCSSSCCCC
T ss_pred hccCccCCCCCCceeEe----cCCCeEECCCCCCEE
Confidence 34556899999885444 234467899998754
No 117
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=66.85 E-value=2.8 Score=31.75 Aligned_cols=31 Identities=26% Similarity=0.544 Sum_probs=21.9
Q ss_pred hcCCCCcCCCCCCcccccCCCCcceeecCCCCcee
Q 022283 102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (299)
Q Consensus 102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (299)
..--.||.||+....+ .+-..+.|..|+...
T Consensus 34 ~~ky~CpfCgk~~vkR----~a~GIW~C~~Cg~~~ 64 (92)
T 3iz5_m 34 HSKYFCEFCGKFAVKR----KAVGIWGCKDCGKVK 64 (92)
T ss_dssp HSCBCCTTTCSSCBEE----EETTEEECSSSCCEE
T ss_pred hccccCcccCCCeeEe----cCcceEEcCCCCCEE
Confidence 4445899999985444 233468999999754
No 118
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=65.34 E-value=3 Score=38.03 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=22.9
Q ss_pred CCCcCCCCCCcccccCCCCcceeecCCCCcee
Q 022283 105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (299)
Q Consensus 105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (299)
.-|++||++.........+..-..||.|.+.+
T Consensus 252 ~pC~~CGt~I~~~~~g~~gRsTyfCp~~~~~~ 283 (287)
T 3w0f_A 252 PNCDQCHSKITVCRFGENSRMTYFCPHCQKHH 283 (287)
T ss_dssp SBCTTTCCBCEEECSSTTCCCEEECTTTSCC-
T ss_pred CCCCCCCCEEEEEEecCCCCCEEECCCccccc
Confidence 37999999987654322246778999998755
No 119
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=65.15 E-value=3 Score=31.07 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=23.4
Q ss_pred hhhcCCCCcCCCCCCcccccCCCCcceeecCCCCcee
Q 022283 100 NVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (299)
Q Consensus 100 w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (299)
-+...-.||.||+....+ .+-..+.|..|+...
T Consensus 31 ~q~~ky~CpfCGk~~vkR----~a~GIW~C~kCg~~~ 63 (83)
T 3j21_i 31 KMRQKHTCPVCGRKAVKR----ISTGIWQCQKCGATF 63 (83)
T ss_dssp HHHSCBCCSSSCSSCEEE----EETTEEEETTTCCEE
T ss_pred HhhcccCCCCCCCceeEe----cCcCeEEcCCCCCEE
Confidence 344566899999985444 233468999999765
No 120
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=64.49 E-value=3.3 Score=31.38 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=22.9
Q ss_pred hhhcCCCCcCCCCCCcccccCCCCcceeecCCCCcee
Q 022283 100 NVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (299)
Q Consensus 100 w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (299)
-+...-.||.||+....+ .+-..+.|..|+...
T Consensus 32 ~q~~ky~CpfCgk~~vkR----~a~GIW~C~~C~~~~ 64 (92)
T 3izc_m 32 QQHARYDCSFCGKKTVKR----GAAGIWTCSCCKKTV 64 (92)
T ss_dssp HHHSCCCCSSSCSSCCEE----EETTEEECTTTCCEE
T ss_pred HHhcCCcCCCCCCceeee----cccceEEcCCCCCEE
Confidence 345567899999885444 233467999998754
No 121
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=63.63 E-value=3.3 Score=34.11 Aligned_cols=44 Identities=16% Similarity=0.309 Sum_probs=31.2
Q ss_pred HHHHHHhhhhcCCCCcCCCCCCcccccCCCCcceeecCCCCceee
Q 022283 93 AAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (299)
Q Consensus 93 ~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (299)
-...|-++...+--|+.||+|=...... ++..-..|..||...-
T Consensus 93 i~~~L~~yI~~yVlC~~C~sPdT~L~k~-~r~~~l~C~ACGa~~~ 136 (148)
T 2d74_B 93 IANKLKKYIKEYVICPVCGSPDTKIIKR-DRFHFLKCEACGAETP 136 (148)
T ss_dssp HHHHHHHHHHHHSSCSSSCCTTCCCCBS-SSSBCCCCSSSCCCCC
T ss_pred HHHHHHHHHHHEEECCCCCCcCcEEEEe-CCEEEEEecCCCCCcc
Confidence 3455667888999999999993332222 4567789999997543
No 122
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.40 E-value=5.6 Score=33.07 Aligned_cols=45 Identities=20% Similarity=0.364 Sum_probs=32.2
Q ss_pred HHHHHhhhhcCCCCcCCCCC-CcccccCCCCcceeecCCCCceeec
Q 022283 94 AVHSAGNVLKISFCQWCGGQ-TKHEVPHGEEKMRAICTVCGKIAYQ 138 (299)
Q Consensus 94 a~~l~~w~~~~~fC~~CG~~-~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (299)
...|.++...+--|+.|++| |...........-..|..||...-.
T Consensus 93 ~~~L~~yI~~YVlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~~V 138 (157)
T 2e9h_A 93 QDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGML 138 (157)
T ss_dssp HHHHHHHHHHTTSCTTTCCSCCEEEEETTTTEEEEECSSSCCEEEC
T ss_pred HHHHHHHHHHeEECCCCCCCccEEEEecCCCEEEEEccCCCCCCcc
Confidence 35577889999999999999 3333211245678899999977653
No 123
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=61.25 E-value=3.5 Score=33.59 Aligned_cols=40 Identities=13% Similarity=0.205 Sum_probs=25.1
Q ss_pred HHHhhhhcCCCCcCCCCCCcccccCCCCcceeecCCCCcee
Q 022283 96 HSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (299)
Q Consensus 96 ~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (299)
.|-++...+--|+.||+|=..... .++-.-..|..||...
T Consensus 95 ~L~~yI~~yVlC~~C~sPdT~l~k-~~r~~~l~C~ACGa~~ 134 (139)
T 3cw2_K 95 LMERFLKAYVECSTCKSLDTILKK-EKKSWYIVCLACGAQT 134 (139)
T ss_dssp TTTTTSSCCSSCCSSSSSCCCSCS-SCSTTTSSCCC-----
T ss_pred HHHHHHHHeeECCCCCCcCcEEEE-eCCeEEEEecCCCCCC
Confidence 455688889999999999332222 2455778999999654
No 124
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=60.90 E-value=3.6 Score=28.85 Aligned_cols=25 Identities=24% Similarity=0.623 Sum_probs=20.1
Q ss_pred cCCCCcCCCCCCcccccCCCCcceeecCCCCc
Q 022283 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGK 134 (299)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~ 134 (299)
+|.-|.+||...... ....|..||+
T Consensus 16 tH~lCrRCG~~syH~-------qK~~Ca~CGy 40 (62)
T 3j21_e 16 THIRCRRCGRVSYNV-------KKGYCAACGF 40 (62)
T ss_dssp CCCBCSSSCSBCEET-------TTTEETTTCT
T ss_pred ceeeecccCcchhcc-------ccccccccCC
Confidence 688999999995443 3679999997
No 125
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=60.86 E-value=2.1 Score=28.95 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=19.7
Q ss_pred cCCCCcCCCCCCcccccCCCCcceeecCCCCceee
Q 022283 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (299)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (299)
...-|+.||+... -....|..||+...
T Consensus 13 ~k~iCpkC~a~~~--------~gaw~CrKCG~~~l 39 (51)
T 3j21_g 13 KKYVCLRCGATNP--------WGAKKCRKCGYKRL 39 (51)
T ss_dssp SEEECTTTCCEEC--------TTCSSCSSSSSCCC
T ss_pred CCccCCCCCCcCC--------CCceecCCCCCccc
Confidence 4457999999832 23678999998743
No 126
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=60.80 E-value=2.2 Score=29.81 Aligned_cols=25 Identities=32% Similarity=0.740 Sum_probs=18.1
Q ss_pred cCCCCcCCCCCCcccccCCCCcceeecCCCCceee
Q 022283 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (299)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (299)
..+.|+.||.-+- ...||.||....
T Consensus 5 ~mr~C~~CgvYTL----------k~~CP~CG~~T~ 29 (60)
T 2apo_B 5 RMKKCPKCGLYTL----------KEICPKCGEKTV 29 (60)
T ss_dssp CCEECTTTCCEES----------SSBCSSSCSBCB
T ss_pred hceeCCCCCCEec----------cccCcCCCCcCC
Confidence 5678999987753 346999986644
No 127
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=59.95 E-value=4.5 Score=27.68 Aligned_cols=33 Identities=33% Similarity=0.693 Sum_probs=23.9
Q ss_pred hhhhcCCCCcCCCCCCcccccCCCCcceeecC--CCCceeec
Q 022283 99 GNVLKISFCQWCGGQTKHEVPHGEEKMRAICT--VCGKIAYQ 138 (299)
Q Consensus 99 ~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~--~Cg~~~y~ 138 (299)
.|....--||.|.+++... + ...+|+ .||. .||
T Consensus 5 ~~lL~iL~CP~c~~~L~~~----~--~~L~C~~~~c~~-~YP 39 (56)
T 2kpi_A 5 AGLLEILACPACHAPLEER----D--AELICTGQDCGL-AYP 39 (56)
T ss_dssp CSCTTSCCCSSSCSCEEEE----T--TEEEECSSSCCC-EEE
T ss_pred HHHHhheeCCCCCCcceec----C--CEEEcCCcCCCc-EEe
Confidence 3455667899999998775 2 468899 8984 443
No 128
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=58.53 E-value=4.8 Score=29.16 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=24.8
Q ss_pred HHHhhhhcCCCCcCCCCCCcccccCCCCcceeecCCCCcee
Q 022283 96 HSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (299)
Q Consensus 96 ~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (299)
.+..-+...-.||.||+....+ ..-....|..|+...
T Consensus 19 kie~~q~~ky~C~fCgk~~vkR----~a~GIW~C~~C~~~~ 55 (73)
T 1ffk_W 19 DVEIKHKKKYKCPVCGFPKLKR----ASTSIWVCGHCGYKI 55 (73)
T ss_pred HHHHhcccCccCCCCCCceeEE----EEeEEEECCCCCcEE
Confidence 3334456677899999864333 233468999999874
No 129
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=58.47 E-value=3.6 Score=29.72 Aligned_cols=11 Identities=9% Similarity=0.008 Sum_probs=5.9
Q ss_pred eeCCEEEEEEe
Q 022283 149 EHDKKILLCKR 159 (299)
Q Consensus 149 ~~~~kILL~rr 159 (299)
..+|+.+.++.
T Consensus 23 ~~~G~~~~I~~ 33 (78)
T 3ga8_A 23 TFRGRKTVLKG 33 (78)
T ss_dssp EETTEEEEEEE
T ss_pred EECCEEEEEcC
Confidence 44555555544
No 130
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=57.23 E-value=3.4 Score=31.96 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=20.7
Q ss_pred hhcCCCCcCCCCCCcccccCCCCcceeecCCCCce
Q 022283 101 VLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKI 135 (299)
Q Consensus 101 ~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~ 135 (299)
+...-.||.||+....+ .+-..+.|..|+..
T Consensus 33 q~aky~CpfCgk~~vKR----~a~GIW~C~kCg~~ 63 (103)
T 4a17_Y 33 QHAKYGCPFCGKVAVKR----AAVGIWKCKPCKKI 63 (103)
T ss_dssp HHSCEECTTTCCEEEEE----EETTEEEETTTTEE
T ss_pred hhcCCCCCCCCCceeee----cCcceEEcCCCCCE
Confidence 34556799999885444 23346789999864
No 131
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=57.20 E-value=4.7 Score=34.29 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=20.6
Q ss_pred hcCCCCcCCCCC-CcccccCCCCcceeecCCCCcee
Q 022283 102 LKISFCQWCGGQ-TKHEVPHGEEKMRAICTVCGKIA 136 (299)
Q Consensus 102 ~~~~fC~~CG~~-~~~~~~~~~~~~~~~C~~Cg~~~ 136 (299)
.....||.||+. ..... +....-.+|.+||.+.
T Consensus 19 n~~~~CPECGs~~t~IV~--D~erGE~VCsdCGLVL 52 (197)
T 3k1f_M 19 NIVLTCPECKVYPPKIVE--RFSEGDVVCALCGLVL 52 (197)
T ss_dssp CCCCCCTTTCCSSCCEEE--EGGGTEEEETTTCBBC
T ss_pred ccCeECcCCCCcCCeEEE--eCCCCEEEEcCCCCCc
Confidence 345589999983 22221 1234468999999754
No 132
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=56.68 E-value=5.2 Score=37.05 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=20.4
Q ss_pred CCCCcCCCCCC-cccccCCCCcceeecCCCCceee
Q 022283 104 ISFCQWCGGQT-KHEVPHGEEKMRAICTVCGKIAY 137 (299)
Q Consensus 104 ~~fC~~CG~~~-~~~~~~~~~~~~~~C~~Cg~~~y 137 (299)
...||.||+.. .... +....-.+|..||.+.=
T Consensus 21 ~~~Cp~Cg~~~~~iv~--D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVE--RFSEGDVVCALCGLVLS 53 (345)
T ss_dssp CCCCSTTCCSCCCCCC--CSSSCSCCCSSSCCCCC
T ss_pred CCcCcCCCCCCCceEE--ECCCCCEecCCCCeEcc
Confidence 45899999962 1111 12334579999997663
No 133
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=55.89 E-value=3.2 Score=28.98 Aligned_cols=25 Identities=36% Similarity=0.794 Sum_probs=18.4
Q ss_pred cCCCCcCCCCCCcccccCCCCcceeecCCCCceee
Q 022283 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (299)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (299)
..+.|+.||.-+- ...||.||...+
T Consensus 4 ~mr~C~~Cg~YTL----------k~~CP~CG~~t~ 28 (60)
T 2aus_D 4 RIRKCPKCGRYTL----------KETCPVCGEKTK 28 (60)
T ss_dssp CCEECTTTCCEES----------SSBCTTTCSBCE
T ss_pred cceECCCCCCEEc----------cccCcCCCCccC
Confidence 5788999987653 246999987654
No 134
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=55.26 E-value=0.46 Score=41.56 Aligned_cols=93 Identities=19% Similarity=0.353 Sum_probs=60.1
Q ss_pred CCcchHHHHHHHHhhhhcCCCCcCCCCCCcccccCCCCcceeecCCCCceeecCCcEEEEEEEeeCCEEEEEEeecCCCC
Q 022283 86 TSSHPSSAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSY 165 (299)
Q Consensus 86 ~~~~~~~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~vV~~iv~~~~kILL~rr~~~p~~ 165 (299)
+......-|.+|..-..+.++|..||.-+... .|+-| .-++.+..++|||.+-.-|+-+.+... ..
T Consensus 50 ~~~~~~~La~al~~~~~~i~~C~~C~nlte~~----------~C~IC---~d~~Rd~~~iCVVE~~~Dv~aiE~t~~-y~ 115 (212)
T 3vdp_A 50 PLDEVRSLSQAIIEAKEKLRYCKICFNITDKE----------VCDIC---SDENRDHSTICVVSHPMDVVAMEKVKE-YK 115 (212)
T ss_dssp CHHHHHHHHHHHHHHHHHCEECTTTCCEESSS----------SCHHH---HCTTSEEEEEEEESSHHHHHHHHTTSC-CC
T ss_pred CHHHHHHHHHHHHHHHHhCCcCCCCCCCCCCC----------cCCCC---CCCCCCCCEEEEECCHHHHHHHHhhCc-cc
Confidence 33334455667777788999999999875321 24444 345667778888876555665555543 37
Q ss_pred CceeeceEEeeCCC--CHHHHHHHHHHHH
Q 022283 166 GLWTLPAGYMEIGE--SAAEGAIRETWEE 192 (299)
Q Consensus 166 g~w~lPgG~VE~GE--s~eeAa~REv~EE 192 (299)
|.|-+.+|.+.|-+ .+++--..++.+-
T Consensus 116 G~YhVLgG~iSPldGigP~~L~i~~L~~R 144 (212)
T 3vdp_A 116 GVYHVLHGVISPIEGVGPEDIRIKELLER 144 (212)
T ss_dssp EEEEECSSCCBTTTTBCGGGTTHHHHHHH
T ss_pred eEEEecCCccCccCCCCccccCHHHHHHH
Confidence 99999999987433 4555445555443
No 135
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=54.77 E-value=3.7 Score=32.08 Aligned_cols=10 Identities=20% Similarity=0.331 Sum_probs=7.6
Q ss_pred CCCCcCCCCC
Q 022283 104 ISFCQWCGGQ 113 (299)
Q Consensus 104 ~~fC~~CG~~ 113 (299)
+..||.||+.
T Consensus 2 ~M~Cp~Cg~~ 11 (133)
T 3o9x_A 2 HMKCPVCHQG 11 (133)
T ss_dssp CCBCTTTSSS
T ss_pred CcCCCcCCCC
Confidence 4578888876
No 136
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=53.66 E-value=5 Score=32.96 Aligned_cols=25 Identities=24% Similarity=0.582 Sum_probs=17.4
Q ss_pred CCcCCCCCCcccccCCCCcceeecCCCCcee
Q 022283 106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (299)
Q Consensus 106 fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (299)
.|..||+..... .....||.||...
T Consensus 134 ~C~~Cg~~~~~~------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 134 VCIGCGRKFSTL------PPGGVCPDCGSKV 158 (165)
T ss_dssp EESSSCCEESSC------CGGGBCTTTCCBE
T ss_pred ECCCCCCcccCC------CCCCcCCCCCCcc
Confidence 599999886532 2235899999753
No 137
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=52.13 E-value=2.6 Score=29.07 Aligned_cols=26 Identities=27% Similarity=0.783 Sum_probs=20.2
Q ss_pred hcCCCCcCCCCCCcccccCCCCcceeecCCCCc
Q 022283 102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGK 134 (299)
Q Consensus 102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~ 134 (299)
.+|.-|.+||...... ....|..||+
T Consensus 15 ktH~~CrRCG~~syH~-------qK~~Ca~CGy 40 (57)
T 1vq8_1 15 TTHTKCRRCGEKSYHT-------KKKVCSSCGF 40 (57)
T ss_dssp CCEEECTTTCSEEEET-------TTTEETTTCT
T ss_pred CccccccccCChhhhc-------cccccccccC
Confidence 5678899999995433 3678999996
No 138
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=51.77 E-value=6.6 Score=36.47 Aligned_cols=31 Identities=19% Similarity=0.408 Sum_probs=19.1
Q ss_pred CCCCcCCCC-CCcccccCCCCcceeecCCCCcee
Q 022283 104 ISFCQWCGG-QTKHEVPHGEEKMRAICTVCGKIA 136 (299)
Q Consensus 104 ~~fC~~CG~-~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (299)
..+||.||+ +...... ....-.+|..||.+.
T Consensus 21 ~~~Cp~C~~~~~~lv~D--~~~G~~vC~~CGlVl 52 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVER--FSEGDVVCALCGLVL 52 (345)
T ss_dssp -CCCSSCCCSSCCEEEE--GGGTEEEETTTCBEE
T ss_pred CCcCCCCCCCCCceeEE--CCCCcEEeCCCCCCc
Confidence 458999997 3222111 234468999999653
No 139
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=51.16 E-value=1.2 Score=31.03 Aligned_cols=10 Identities=50% Similarity=1.431 Sum_probs=4.1
Q ss_pred CCCcCCCCCC
Q 022283 105 SFCQWCGGQT 114 (299)
Q Consensus 105 ~fC~~CG~~~ 114 (299)
+||.+||..+
T Consensus 34 r~CaRCGg~v 43 (62)
T 2a20_A 34 KFCARCGGRV 43 (62)
T ss_dssp EECTTSEEEE
T ss_pred eeecccCCEe
Confidence 3444444443
No 140
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=51.06 E-value=7.7 Score=29.63 Aligned_cols=18 Identities=6% Similarity=-0.123 Sum_probs=13.5
Q ss_pred hhhcCCCCcCCCCCCccc
Q 022283 100 NVLKISFCQWCGGQTKHE 117 (299)
Q Consensus 100 w~~~~~fC~~CG~~~~~~ 117 (299)
|.-..--||.|.+++...
T Consensus 4 ~LLdILaCP~cK~pL~l~ 21 (97)
T 2k5r_A 4 KLLHLLCSPDTRQPLSLL 21 (97)
T ss_dssp TTCSSCCCCTTSSCCEEC
T ss_pred HHhhheECCCCCCccccc
Confidence 445566799999998764
No 141
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=50.09 E-value=4.6 Score=31.57 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=17.2
Q ss_pred CCCCcCCCCCCcccccCCCCccee-ecCCCCce
Q 022283 104 ISFCQWCGGQTKHEVPHGEEKMRA-ICTVCGKI 135 (299)
Q Consensus 104 ~~fC~~CG~~~~~~~~~~~~~~~~-~C~~Cg~~ 135 (299)
.-.|..||...... .... .||.||..
T Consensus 73 ~~~C~~CG~~~e~~------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 73 ELECKDCSHVFKPN------ALDYGVCEKCHSK 99 (119)
T ss_dssp EEECSSSSCEECSC------CSTTCCCSSSSSC
T ss_pred eEEcCCCCCEEeCC------CCCCCcCccccCC
Confidence 34788888876542 2245 78988865
No 142
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=49.53 E-value=4.7 Score=33.96 Aligned_cols=44 Identities=16% Similarity=0.325 Sum_probs=31.4
Q ss_pred HHHHHhhhhcCCCCcCCCCCCcccccC-CCCcceeecCCCCceee
Q 022283 94 AVHSAGNVLKISFCQWCGGQTKHEVPH-GEEKMRAICTVCGKIAY 137 (299)
Q Consensus 94 a~~l~~w~~~~~fC~~CG~~~~~~~~~-~~~~~~~~C~~Cg~~~y 137 (299)
...|-++...+--|+.||.|=...... .+...-..|..||...-
T Consensus 86 ~~~L~~yI~~YVlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~ 130 (170)
T 2g2k_A 86 QDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGM 130 (170)
T ss_dssp HHHHHHHHHHHHSCTTTSSSCEEEEEETTTTEEEEEETTTCCCCC
T ss_pred HHHHHHHHHHeEECCCCCCCccEEEEecCCCEEEEEccccCCccc
Confidence 455667888999999999993332221 24567789999997654
No 143
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=49.41 E-value=3.7 Score=33.43 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=30.1
Q ss_pred HHHHHhhhhcCCCCcCCCCC-CcccccCCCCcceeecCCCCcee
Q 022283 94 AVHSAGNVLKISFCQWCGGQ-TKHEVPHGEEKMRAICTVCGKIA 136 (299)
Q Consensus 94 a~~l~~w~~~~~fC~~CG~~-~~~~~~~~~~~~~~~C~~Cg~~~ 136 (299)
...|-++...+--|+.||+| |.... .++-.-..|..||...
T Consensus 92 ~~~L~~yI~~yVlC~~C~sPdT~l~k--~~r~~~l~C~ACGa~~ 133 (138)
T 1nee_A 92 NERIEDYVNKFVICHECNRPDTRIIR--EGRISLLKCEACGAKA 133 (138)
T ss_dssp HHHHHHHHTHHHHHTCCSSCSSCCEE--ETTTTEEECSTTSCCC
T ss_pred HHHHHHHHhhEEECCCCCCcCcEEEE--cCCeEEEEccCCCCCc
Confidence 34566788889999999999 33332 2456788999999754
No 144
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=48.74 E-value=12 Score=27.61 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=18.1
Q ss_pred CCCcCCCCCCcccccCCCCcceeecCCCCcee
Q 022283 105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (299)
Q Consensus 105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (299)
..||.|++++... +....|..|+..+
T Consensus 3 ~~CP~C~~~l~~~------~~~~~C~~C~~~~ 28 (81)
T 2jrp_A 3 ITCPVCHHALERN------GDTAHCETCAKDF 28 (81)
T ss_dssp CCCSSSCSCCEEC------SSEEECTTTCCEE
T ss_pred CCCCCCCCccccC------CCceECccccccC
Confidence 5788888887643 2256788888643
No 145
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=47.02 E-value=25 Score=29.34 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=23.1
Q ss_pred CCCCcC--CCCCCcccccCCCCcceeecCCCCceeecCCcE
Q 022283 104 ISFCQW--CGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKM 142 (299)
Q Consensus 104 ~~fC~~--CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~ 142 (299)
+.-||. |.+++... +.....|+.|+.. +++|..
T Consensus 43 Y~aC~~~~CnKKv~~~-----~~g~~~CekC~~~-~~~~~~ 77 (181)
T 1l1o_C 43 YQACPTQDCNKKVIDQ-----QNGLYRCEKCDTE-FPNFKY 77 (181)
T ss_dssp EEBCCSTTCCCBCEEE-----TTTEEEETTTTEE-ESSCCE
T ss_pred ECCCCchhcCCccccC-----CCCeEECCCCCCc-CCCceE
Confidence 668999 99997643 2236899999854 555543
No 146
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=47.01 E-value=7.4 Score=34.07 Aligned_cols=31 Identities=26% Similarity=0.507 Sum_probs=21.0
Q ss_pred hcCCCCcCCCCCCcccccCCCCcceeecCCCCce
Q 022283 102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKI 135 (299)
Q Consensus 102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~ 135 (299)
..+.-||.||+.-...+. ++++ ..|.+||..
T Consensus 12 ~~~~~CP~Cg~~d~~~~~--~dg~-~~C~~Cg~~ 42 (255)
T 1nui_A 12 LYHIPCDNCGSSDGNSLF--SDGH-TFCYVCEKW 42 (255)
T ss_dssp EEEECCSSSCCSSCEEEE--TTSC-EEETTTCCE
T ss_pred ecCCcCCCCCCCCCceEe--CCCC-eecccCCCc
Confidence 457899999996333332 2343 899999964
No 147
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=46.66 E-value=8.9 Score=29.35 Aligned_cols=25 Identities=24% Similarity=0.610 Sum_probs=18.2
Q ss_pred CCCcCCCCCCcccccCCCCcceeecCCCCce
Q 022283 105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGKI 135 (299)
Q Consensus 105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~ 135 (299)
..||.|++++... + ....|..|+..
T Consensus 33 ~~CP~Cq~eL~~~-----g-~~~hC~~C~~~ 57 (101)
T 2jne_A 33 LHCPQCQHVLDQD-----N-GHARCRSCGEF 57 (101)
T ss_dssp CBCSSSCSBEEEE-----T-TEEEETTTCCE
T ss_pred ccCccCCCcceec-----C-CEEECccccch
Confidence 8999999998753 2 24568888763
No 148
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=45.29 E-value=13 Score=26.83 Aligned_cols=30 Identities=23% Similarity=0.510 Sum_probs=21.2
Q ss_pred cCCCCcC--CCCCCcccccCCCCcceeecC-----CCCcee
Q 022283 103 KISFCQW--CGGQTKHEVPHGEEKMRAICT-----VCGKIA 136 (299)
Q Consensus 103 ~~~fC~~--CG~~~~~~~~~~~~~~~~~C~-----~Cg~~~ 136 (299)
..+|||+ ||..+... .+.....|+ .||+.+
T Consensus 24 ~~~~CP~p~C~~~v~~~----~~~~~v~C~~~~~~~C~~~F 60 (80)
T 2jmo_A 24 GGVLCPRPGCGAGLLPE----PDQRKVTCEGGNGLGCGFAF 60 (80)
T ss_dssp SSCCCCSSSCCCCCCCC----SCTTSBCTTSSSTTCCSCCE
T ss_pred CcEECCCCCCCcccEEC----CCCCcCCCCCCCCCCCCCee
Confidence 3789999 99987543 234557898 888643
No 149
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=44.84 E-value=6.4 Score=31.98 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=19.1
Q ss_pred cCCCCcCCCCCCcccccCCCCcceeecCCCCcee
Q 022283 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (299)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (299)
.-+.|+.||+...+- +..|+.|+...
T Consensus 46 ~~~rC~~CG~~~~PP--------r~~Cp~C~s~~ 71 (145)
T 3irb_A 46 IGSKCSKCGRIFVPA--------RSYCEHCFVKI 71 (145)
T ss_dssp EEEECTTTCCEEESC--------CSEETTTTEEC
T ss_pred EEEEeCCCCcEEcCc--------hhhCcCCCCCc
Confidence 467899999885442 57899998654
No 150
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=44.78 E-value=11 Score=27.13 Aligned_cols=35 Identities=14% Similarity=0.345 Sum_probs=26.4
Q ss_pred HHHHHhhhhcCCCCcCCCCCCcccccCCCCcceeecCCCCc
Q 022283 94 AVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGK 134 (299)
Q Consensus 94 a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~ 134 (299)
-..|-+-.=+++-||.|+.++. ++|.+++-+.|-+
T Consensus 20 DqelHdlnCs~NiCPYC~nRls------~eGl~RHV~~CPK 54 (77)
T 2l7x_A 20 DAEMHDLNCSYNICPYCASRLT------SDGLARHVTQCPK 54 (77)
T ss_dssp HHHHHHHHHTTTCCTTTCCCCC------TTTHHHHHTTCSH
T ss_pred HHHHHHcCCCcccChhhhccCC------ccchhhhcccCcc
Confidence 3556667788999999999974 4577777777753
No 151
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=44.36 E-value=0.63 Score=41.06 Aligned_cols=77 Identities=18% Similarity=0.288 Sum_probs=49.7
Q ss_pred CcchHHHHHHHHhhhhcCCCCcCCCCCCcccccCCCCcceeecCCCCceeecCCcEEEEEEEeeCCEEEEEEeecCCCCC
Q 022283 87 SSHPSSAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYG 166 (299)
Q Consensus 87 ~~~~~~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~vV~~iv~~~~kILL~rr~~~p~~g 166 (299)
......-|.+|..-..+.++|..||.-++. -.|+-|. -++.+...+|||.+-.-|+-+.+... ..|
T Consensus 37 ~~~~~~La~al~~~~~~i~~C~~C~nlte~----------~~C~IC~---d~~Rd~~~iCVVE~~~Dv~aiE~t~~-y~G 102 (228)
T 1vdd_A 37 REDIERLASALLEAKRDLHVCPICFNITDA----------EKCDVCA---DPSRDQRTICVVEEPGDVIALERSGE-YRG 102 (228)
T ss_dssp HHHHHHHHHHHHHHHHHCEECSSSCCEESS----------SSCHHHH---CSSSCTTEEEEESSHHHHHHTTTTSS-CCS
T ss_pred HHHHHHHHHHHHHHHhcCeEcCCCCCCcCC----------CcCCCCC---CCCcCCCeEEEECCHHHHHHHHHhcc-cce
Confidence 333445567777778899999999998532 2366564 33334445666765444555555433 379
Q ss_pred ceeeceEEeeC
Q 022283 167 LWTLPAGYMEI 177 (299)
Q Consensus 167 ~w~lPgG~VE~ 177 (299)
.|-+.+|.+.|
T Consensus 103 ~YhVLgG~lSP 113 (228)
T 1vdd_A 103 LYHVLHGVLSP 113 (228)
T ss_dssp EEEECSSCCBG
T ss_pred EEEecCCccCc
Confidence 99999998764
No 152
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=44.07 E-value=4.7 Score=34.09 Aligned_cols=35 Identities=17% Similarity=0.457 Sum_probs=22.7
Q ss_pred CCcCCCCCCcccccC---------------CCCcceeecCCCCceeecCC
Q 022283 106 FCQWCGGQTKHEVPH---------------GEEKMRAICTVCGKIAYQNP 140 (299)
Q Consensus 106 fC~~CG~~~~~~~~~---------------~~~~~~~~C~~Cg~~~y~~p 140 (299)
||+.|+..+...... ..+...+.|..||.++..++
T Consensus 124 yc~~c~~~~~e~~f~~~dl~~~l~~~~~~f~~~~~~rtc~~Cg~~~~~~~ 173 (174)
T 1yfu_A 124 YCDACGHLVHRVEVQLKSIVTDLPPLFESFYASEDKRRCPHCGQVHPGRA 173 (174)
T ss_dssp ECTTTCCEEEEEEECCSCHHHHSHHHHHHHHTCHHHHBCTTTCCBCCCSC
T ss_pred EcCCCCCEEEEEEEEEechhHhHHHHHHHHhcCHhhccCCCCCCcCCCCC
Confidence 899998865433100 02345688999998877654
No 153
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=43.58 E-value=13 Score=26.35 Aligned_cols=32 Identities=16% Similarity=0.361 Sum_probs=24.1
Q ss_pred hhhhcCCCCcCCCCCCcccccCCCCcceeecCCCCceee
Q 022283 99 GNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (299)
Q Consensus 99 ~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (299)
.|... .-|..|+.+.... ..+.+|..||.+.=
T Consensus 7 ~W~~~-~~C~~C~~~F~~~------~RrHHCR~CG~v~C 38 (73)
T 1vfy_A 7 DWIDS-DACMICSKKFSLL------NRKHHCRSCGGVFC 38 (73)
T ss_dssp CCCCC-SBCTTTCCBCBTT------BCCEECTTTCCEEC
T ss_pred cCccC-CcccCCCCccCCc------cccccCCCCCEEEc
Confidence 47654 5899999987653 45789999998664
No 154
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=43.23 E-value=7.1 Score=31.53 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=19.7
Q ss_pred CCCCcCCCCCCcccc-----cCCCCcc----------eeecCCCCceee
Q 022283 104 ISFCQWCGGQTKHEV-----PHGEEKM----------RAICTVCGKIAY 137 (299)
Q Consensus 104 ~~fC~~CG~~~~~~~-----~~~~~~~----------~~~C~~Cg~~~y 137 (299)
.-.|..||....... .+..... ...||.||....
T Consensus 70 ~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~ 118 (139)
T 3a43_A 70 VFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDF 118 (139)
T ss_dssp EEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCE
T ss_pred cEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCcc
Confidence 457999998865431 0000112 567999986543
No 155
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=43.18 E-value=11 Score=32.48 Aligned_cols=32 Identities=16% Similarity=0.389 Sum_probs=23.9
Q ss_pred hhhhcCCCCcCCCCCCcccccCCCCcceeecCCCCceee
Q 022283 99 GNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (299)
Q Consensus 99 ~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (299)
.|... ..|..|+.+.... ..+.+|..||.++=
T Consensus 157 ~W~~~-~~C~~C~~~F~~~------~rrhhCr~CG~v~C 188 (220)
T 1dvp_A 157 NWADG-RVCHRCRVEFTFT------NRKHHCRNCGQVFC 188 (220)
T ss_dssp CCCCC-SBCTTTCCBCCSS------SCCEECTTTCCEEC
T ss_pred cCCCC-CccCCCCCccCCc------ccccccCCcCCEEC
Confidence 47654 7999999987543 45789999997654
No 156
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=40.57 E-value=8.2 Score=31.43 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=18.8
Q ss_pred hcCCCCcCCCCCCcccccCCCCcceeecCCCCce
Q 022283 102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKI 135 (299)
Q Consensus 102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~ 135 (299)
-..+.|+.||+...+- +..|+.|+..
T Consensus 45 L~~~rC~~CG~~~fPP--------r~~Cp~C~s~ 70 (145)
T 2gnr_A 45 IIGSKCSKCGRIFVPA--------RSYCEHCFVK 70 (145)
T ss_dssp CEEEECTTTCCEEESC--------CSEETTTTEE
T ss_pred EEEEEECCCCcEEeCC--------CCCCCCCCCC
Confidence 3467899999885432 5689999865
No 157
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=40.31 E-value=6.8 Score=29.65 Aligned_cols=31 Identities=23% Similarity=0.624 Sum_probs=23.3
Q ss_pred CCCCcCCCCCCcccccCCCCcceeecCCCCceeecC
Q 022283 104 ISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQN 139 (299)
Q Consensus 104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~ 139 (299)
|--|+ ||..+... +.-....|+.||...|.+
T Consensus 48 FFkC~-C~~Rt~sl----~r~P~~~C~~Cg~~~wer 78 (92)
T 2kwq_A 48 FFKCP-CGNRTISL----DRLPKKHCSTCGLFKWER 78 (92)
T ss_dssp EEECT-TSCEEEES----SSSCCSCCTTTCSCCCEE
T ss_pred EEECC-CCCceeEe----eeCCCCCCCCCCCCceEE
Confidence 44697 99997665 455667999999887744
No 158
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=39.44 E-value=20 Score=23.99 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=18.3
Q ss_pred CCCCcCCCCCCccc----c-cCCC-CcceeecCCCCcee
Q 022283 104 ISFCQWCGGQTKHE----V-PHGE-EKMRAICTVCGKIA 136 (299)
Q Consensus 104 ~~fC~~CG~~~~~~----~-~~~~-~~~~~~C~~Cg~~~ 136 (299)
..-||.||+.-... . ..++ .-.-..|..||...
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w 53 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTW 53 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEe
Confidence 34699999863211 0 1111 12346899998764
No 159
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=39.42 E-value=8.9 Score=25.18 Aligned_cols=32 Identities=19% Similarity=0.430 Sum_probs=22.4
Q ss_pred cCCCCcCCCCCCcccccCCCCcceeecCCCCce
Q 022283 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKI 135 (299)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~ 135 (299)
..+.|..||.......-.+..+. ..|..||..
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~ 34 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGLY 34 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHH
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHH
Confidence 35789999998665543344444 789999863
No 160
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=38.61 E-value=11 Score=31.53 Aligned_cols=21 Identities=38% Similarity=0.903 Sum_probs=14.6
Q ss_pred CcCCCCCCcccccCCCCcceeecCCCCc
Q 022283 107 CQWCGGQTKHEVPHGEEKMRAICTVCGK 134 (299)
Q Consensus 107 C~~CG~~~~~~~~~~~~~~~~~C~~Cg~ 134 (299)
|+.||--.... ....||.||.
T Consensus 141 C~~CG~i~~~~-------~p~~CP~Cg~ 161 (170)
T 3pwf_A 141 CPICGYTAVDE-------APEYCPVCGA 161 (170)
T ss_dssp CTTTCCEEESC-------CCSBCTTTCC
T ss_pred eCCCCCeeCCC-------CCCCCCCCCC
Confidence 99999875422 2238999984
No 161
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=36.71 E-value=11 Score=25.68 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=14.4
Q ss_pred CCCCcCCCCCCcccccCCCCcceeecCCCC
Q 022283 104 ISFCQWCGGQTKHEVPHGEEKMRAICTVCG 133 (299)
Q Consensus 104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg 133 (299)
...||.||...... ..|++ |
T Consensus 27 l~~c~~cGe~~l~H---------~vc~~-G 46 (56)
T 3r8s_0 27 LSVDKTSGEKHLRH---------HITAD-G 46 (56)
T ss_dssp EEECTTTCCEEETT---------BCCTT-S
T ss_pred eeECCCCCCeeccc---------EECCC-C
Confidence 37899999975443 57887 6
No 162
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=36.42 E-value=7.3 Score=32.95 Aligned_cols=34 Identities=15% Similarity=0.501 Sum_probs=21.4
Q ss_pred CCcCCCCCCcccccC---------------CCCcceeecCCCCceeecC
Q 022283 106 FCQWCGGQTKHEVPH---------------GEEKMRAICTVCGKIAYQN 139 (299)
Q Consensus 106 fC~~CG~~~~~~~~~---------------~~~~~~~~C~~Cg~~~y~~ 139 (299)
||+.|+..+...... ..+...+.|..||.++...
T Consensus 126 yc~~c~~~~~e~~f~~~dl~~ql~~~~~~f~~~~e~rtc~~CG~~~~~~ 174 (176)
T 1zvf_A 126 YCSHCRQVVHESELQMLDLGTQVKEAILDFENDVEKRTCFHCKTLNYAR 174 (176)
T ss_dssp ECTTTCCEEEEEECCSSSTTHHHHHHHHHHHTCHHHHBCTTTCCBCCSS
T ss_pred EcCCCCCEEEEEEEEEechhHhHHHHHHHHhcChhhccCCCCCCcCCCC
Confidence 899998865433100 0233568899999887643
No 163
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=36.41 E-value=6.6 Score=29.66 Aligned_cols=28 Identities=29% Similarity=0.682 Sum_probs=21.0
Q ss_pred hhcCCCCcCCCCCCcccccCCCCcceeecCCCCce
Q 022283 101 VLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKI 135 (299)
Q Consensus 101 ~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~ 135 (299)
..+|.-|.+||...... ....|..||+.
T Consensus 13 ~KtHtlCrRCG~~syH~-------qK~~Ca~CGyp 40 (94)
T 4a18_A 13 QKTHTLCRRCGKATYHK-------QKLRCAACGYP 40 (94)
T ss_dssp CCCEEECTTTCSEEEET-------TTTEESSSCGG
T ss_pred CCccceecCcCchhhhh-------ccccccccCCc
Confidence 45678899999995443 35689999963
No 164
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=36.30 E-value=24 Score=27.27 Aligned_cols=37 Identities=24% Similarity=0.453 Sum_probs=26.5
Q ss_pred cCCCCcCCCCCCcccccCCCCcceeecCCCCceeecCCcEEE
Q 022283 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVV 144 (299)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~vV 144 (299)
.---|-.||-.... .-+..-.||.|+-..-..|...+
T Consensus 66 ~p~~C~~CG~~F~~-----~~~kPsrCP~CkSe~Ie~P~F~I 102 (105)
T 2gmg_A 66 KPAQCRKCGFVFKA-----EINIPSRCPKCKSEWIEEPRFKL 102 (105)
T ss_dssp CCCBBTTTCCBCCC-----CSSCCSSCSSSCCCCBCCCCEEE
T ss_pred ECcChhhCcCeecc-----cCCCCCCCcCCCCCccCCcceee
Confidence 35579999999721 22345789999988887776654
No 165
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A*
Probab=36.08 E-value=25 Score=32.00 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=19.2
Q ss_pred HHHHHHHhhhhcCCC-------CcCCCCCCcc
Q 022283 92 SAAVHSAGNVLKISF-------CQWCGGQTKH 116 (299)
Q Consensus 92 ~~a~~l~~w~~~~~f-------C~~CG~~~~~ 116 (299)
....+|++|.++--| |..||+++..
T Consensus 62 ~~~~~ll~wFk~~fF~~~~~P~c~~C~~~~~~ 93 (295)
T 2f4m_A 62 FLLLELLHWFKEEFFRWVNNIVCSKCGGETRS 93 (295)
T ss_dssp HHHHHHHHHHHHTTCEECSSCCCTTTCCCCEE
T ss_pred HHHHHHHHHHHhcCCEEeCCCCCcccCCcccc
Confidence 457899999987444 9999987655
No 166
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=34.98 E-value=7.6 Score=29.34 Aligned_cols=27 Identities=26% Similarity=0.688 Sum_probs=21.0
Q ss_pred hhcCCCCcCCCCCCcccccCCCCcceeecCCCCc
Q 022283 101 VLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGK 134 (299)
Q Consensus 101 ~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~ 134 (299)
..+|.-|.+||...... ....|..||+
T Consensus 13 ~KtHtlCrRCG~~syH~-------qK~~Ca~CGy 39 (94)
T 3iz5_l 13 NKTHTLCVRCGRRSFHL-------QKSTCSSCGY 39 (94)
T ss_dssp CCSEEECTTTCSEEEEG-------GGTEETTTCS
T ss_pred CCccceecCcCchhhhc-------ccccccccCC
Confidence 45788899999995443 3579999996
No 167
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=34.81 E-value=11 Score=33.37 Aligned_cols=39 Identities=21% Similarity=0.363 Sum_probs=25.8
Q ss_pred cCCCCcCCCCCCcccccCC--CCcceeecCCCCceeecCCc
Q 022283 103 KISFCQWCGGQTKHEVPHG--EEKMRAICTVCGKIAYQNPK 141 (299)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~--~~~~~~~C~~Cg~~~y~~p~ 141 (299)
...-|+.|.-.+.+..... .+.....||.||.+.|..+.
T Consensus 197 ~~~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~~~~~ 237 (256)
T 3na7_A 197 KKQACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILYAEGA 237 (256)
T ss_dssp BTTBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEECSCC
T ss_pred eCCccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEEeCcc
Confidence 3568999998875432100 12345899999999986554
No 168
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=34.45 E-value=20 Score=26.62 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=17.1
Q ss_pred CCCCcCCCCC-Ccc-cccCCCCcceeecCCCCcee
Q 022283 104 ISFCQWCGGQ-TKH-EVPHGEEKMRAICTVCGKIA 136 (299)
Q Consensus 104 ~~fC~~CG~~-~~~-~~~~~~~~~~~~C~~Cg~~~ 136 (299)
.--||.||+. ... .+.-..+.-...|..||..+
T Consensus 23 ~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~ 57 (85)
T 1wii_A 23 QFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF 57 (85)
T ss_dssp CCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEE
T ss_pred eEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeE
Confidence 3457777777 221 11111234456777777544
No 169
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=33.84 E-value=18 Score=24.89 Aligned_cols=29 Identities=14% Similarity=0.337 Sum_probs=21.3
Q ss_pred hcCCCCcCCCCCCcccccCCCCcceeecCC--CCc
Q 022283 102 LKISFCQWCGGQTKHEVPHGEEKMRAICTV--CGK 134 (299)
Q Consensus 102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~--Cg~ 134 (299)
.+.+-||.|+.+.+.. ++=....|.. |+.
T Consensus 4 ~~~k~CP~C~~~Iek~----~GCnhmtC~~~~C~~ 34 (60)
T 1wd2_A 4 ANTKECPKCHVTIEKD----GGCNHMVCRNQNCKA 34 (60)
T ss_dssp CCCCCCTTTCCCCSSC----CSCCSSSCCSSGGGS
T ss_pred ccceECcCCCCeeEeC----CCCCcEEECCCCcCC
Confidence 3568899999997765 4556778876 764
No 170
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=32.90 E-value=21 Score=32.73 Aligned_cols=25 Identities=20% Similarity=0.523 Sum_probs=17.5
Q ss_pred cCCCCcCCCCCCcccccCCCCcceeecCCCCce
Q 022283 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKI 135 (299)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~ 135 (299)
++-+|+.||+.=.. .|..|+.||..
T Consensus 207 R~l~Cs~C~t~W~~--------~R~~C~~Cg~~ 231 (309)
T 2fiy_A 207 RYLSCSLCACEWHY--------VRIKCSHCEES 231 (309)
T ss_dssp EEEEETTTCCEEEC--------CTTSCSSSCCC
T ss_pred EEEEeCCCCCEEee--------cCcCCcCCCCC
Confidence 46788888887433 36678888864
No 171
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=31.86 E-value=31 Score=24.94 Aligned_cols=34 Identities=18% Similarity=0.433 Sum_probs=22.4
Q ss_pred Hhhhhc--CCCCcCCCCCCcccccCCCCcceeecCCCCceee
Q 022283 98 AGNVLK--ISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (299)
Q Consensus 98 ~~w~~~--~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (299)
..|..+ ...|..|+.+.... ..+.+|..||.++=
T Consensus 11 ~~W~~d~~~~~C~~C~~~Fs~~------~RrHHCR~CG~v~C 46 (82)
T 2yw8_A 11 HAWLKDDEATHCRQCEKEFSIS------RRKHHCRNCGHIFC 46 (82)
T ss_dssp ----CCCCCCBCTTTCCBCBTT------BCCEECTTTCCEEC
T ss_pred CccccCccCCcccCcCCcccCc------cccccCCCCCCEEC
Confidence 457765 45899999997643 45789999997653
No 172
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=31.84 E-value=41 Score=31.83 Aligned_cols=44 Identities=9% Similarity=0.268 Sum_probs=27.2
Q ss_pred cCCCCcC--CCCCCcccccCCCCcceeecCCCCcee-ecCCcEEEEEEEeeC
Q 022283 103 KISFCQW--CGGQTKHEVPHGEEKMRAICTVCGKIA-YQNPKMVVGCLIEHD 151 (299)
Q Consensus 103 ~~~fC~~--CG~~~~~~~~~~~~~~~~~C~~Cg~~~-y~~p~~vV~~iv~~~ 151 (299)
-+.-||. |++++... ......|+.|+... -+.++..+.+.+.++
T Consensus 307 ~Y~aC~~~~C~kkv~~~-----~~g~~~C~~C~~~~~~~~~ry~l~~~v~D~ 353 (444)
T 4gop_C 307 YYTACASEGCNKKVNLD-----HENNWRCEKCDRSYATPEYRYILSTNVADA 353 (444)
T ss_dssp EEEECCSTTCCCBEEEC-----TTSCEEETTTTEEESSCEEEECEEEEEEET
T ss_pred EEccCCcccCCCccccC-----CCccEECCCCCCcCccccEEEEEEEEEEeC
Confidence 3567999 99997543 22368999999663 233344444444444
No 173
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.80 E-value=29 Score=25.17 Aligned_cols=33 Identities=24% Similarity=0.446 Sum_probs=23.6
Q ss_pred hhhhc--CCCCcCCCCCCcccccCCCCcceeecCCCCceee
Q 022283 99 GNVLK--ISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (299)
Q Consensus 99 ~w~~~--~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (299)
.|..+ ...|..|+.+.... ..+.+|..||.++=
T Consensus 7 ~W~pd~~~~~C~~C~~~F~~~------~RrHHCR~CG~vfC 41 (84)
T 1x4u_A 7 GRYPTNNFGNCTGCSATFSVL------KKRRSCSNCGNSFC 41 (84)
T ss_dssp CSCSCCCCSSCSSSCCCCCSS------SCCEECSSSCCEEC
T ss_pred ccccCCCCCcCcCcCCccccc------hhhhhhcCCCcEEC
Confidence 46644 46899999997543 45778999987653
No 174
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=31.48 E-value=31 Score=32.02 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=17.4
Q ss_pred HHHHHHhhhhcC-------CCCcCCCCCC
Q 022283 93 AAVHSAGNVLKI-------SFCQWCGGQT 114 (299)
Q Consensus 93 ~a~~l~~w~~~~-------~fC~~CG~~~ 114 (299)
--.+|++|.++. .=|+.||+++
T Consensus 101 ll~~LL~WFk~~fF~wvn~p~C~~Cg~~~ 129 (335)
T 1x3z_A 101 LVKELLRYFKQDFFKWCNKPDCNHCGQNT 129 (335)
T ss_dssp HHHHHHHHHHHTTCEECSSCCCSSSCSSC
T ss_pred HHHHHHHHHHhcCCEeeCCCCccccCCCc
Confidence 458899999774 4599999874
No 175
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=31.48 E-value=27 Score=27.47 Aligned_cols=34 Identities=21% Similarity=0.479 Sum_probs=20.7
Q ss_pred cCCCCcCCCCCCcccc-----cCCC--CcceeecCCCCcee
Q 022283 103 KISFCQWCGGQTKHEV-----PHGE--EKMRAICTVCGKIA 136 (299)
Q Consensus 103 ~~~fC~~CG~~~~~~~-----~~~~--~~~~~~C~~Cg~~~ 136 (299)
.-.||..||+.+.+-. ..+. ......|..||...
T Consensus 59 KR~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~k 99 (123)
T 2k3r_A 59 KRRYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIM 99 (123)
T ss_dssp TTSBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEE
T ss_pred HHHhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEE
Confidence 4569999999876431 1111 02455788888654
No 176
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=31.33 E-value=15 Score=37.39 Aligned_cols=27 Identities=33% Similarity=0.662 Sum_probs=19.6
Q ss_pred cCCCCcCCCCCCcccccCCCCcceeecCC---CC
Q 022283 103 KISFCQWCGGQTKHEVPHGEEKMRAICTV---CG 133 (299)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~---Cg 133 (299)
.-..||.||+++... +++...+|+. |.
T Consensus 404 ~P~~CP~Cgs~l~~~----~~~~~~rC~n~~~Cp 433 (671)
T 2owo_A 404 FPTHCPVCGSDVERV----EGEAVARCTGGLICG 433 (671)
T ss_dssp CCSBCTTTCCBEEEC----TTCSCEEECCGGGCH
T ss_pred CCCCCCCCCCEeEEe----cCCEEEECCCCCCCH
Confidence 346899999998653 4456778983 74
No 177
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=30.87 E-value=31 Score=27.11 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=24.8
Q ss_pred hhhhc--CCCCcCCCCCCcccccCCCCcceeecCCCCceee
Q 022283 99 GNVLK--ISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (299)
Q Consensus 99 ~w~~~--~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (299)
.|... ...|..|+.+.... ..+.+|..||.++=
T Consensus 62 ~W~~d~~~~~C~~C~~~Fs~~------~RrHHCR~CG~vfC 96 (125)
T 1joc_A 62 KWAEDNEVQNCMACGKGFSVT------VRRHHCRQCGNIFC 96 (125)
T ss_dssp CCCCGGGCCBCTTTCCBCCSS------SCCEECTTTCCEEC
T ss_pred ccccCCCCCCCcCcCCccccc------cccccCCCCCeEEC
Confidence 58754 57899999997543 45779999997654
No 178
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=30.73 E-value=11 Score=26.45 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=23.5
Q ss_pred cCCCCcCCCCCCcccccCCCCcceeecCCCCcee
Q 022283 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (299)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (299)
....|..||.......-.|..|. ..|..||..+
T Consensus 6 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~ 38 (63)
T 3dfx_A 6 AGTSCANCQTTTTTLWRRNANGD-PVCNACGLYY 38 (63)
T ss_dssp TTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHH
T ss_pred CCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHH
Confidence 45789999998665544445555 7899998644
No 179
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=30.59 E-value=14 Score=31.53 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=15.6
Q ss_pred CCcCCCCCCcccccCCCCcceeecCCCCce
Q 022283 106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKI 135 (299)
Q Consensus 106 fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~ 135 (299)
.|+.||--... .....||.||..
T Consensus 173 ~C~~CG~i~~g-------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 173 LCPICGYIHKG-------EDFEKCPICFRP 195 (202)
T ss_dssp ECSSSCCEEES-------SCCSBCTTTCCB
T ss_pred EECCCCCEEcC-------cCCCCCCCCCCC
Confidence 59999976431 233689999853
No 180
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=30.37 E-value=24 Score=30.49 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=24.0
Q ss_pred hhhhcCCCCcCCCCCCcccccCCCCcceeecCCCCceeec
Q 022283 99 GNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (299)
Q Consensus 99 ~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (299)
.|... ..|..|+.+.... ..+.+|..||.+.=.
T Consensus 160 ~W~~~-~~C~~C~~~F~~~------~RrhHCR~CG~v~C~ 192 (226)
T 3zyq_A 160 DWVDA-EECHRCRVQFGVM------TRKHHCRACGQIFCG 192 (226)
T ss_dssp CCCCC-SBCTTTCCBCBTT------BCCEECTTTCCEECT
T ss_pred ccccC-CCCcCcCCCCCcc------ccccccCCCcCEeCh
Confidence 36544 6899999987643 457899999977643
No 181
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=30.19 E-value=30 Score=27.06 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=20.6
Q ss_pred cCCCCcCCCCCCcccc-----cCCCC---cceeecCCCCcee
Q 022283 103 KISFCQWCGGQTKHEV-----PHGEE---KMRAICTVCGKIA 136 (299)
Q Consensus 103 ~~~fC~~CG~~~~~~~-----~~~~~---~~~~~C~~Cg~~~ 136 (299)
.-.||..||+.+.+-. .. .+ .....|..||...
T Consensus 64 KR~~Ck~C~s~LiPG~t~~vri~-~~~~~~vv~tCl~Cg~~k 104 (120)
T 1x0t_A 64 KRRYCKRCHTFLIPGVNARVRLR-TKRMPHVVITCLECGYIM 104 (120)
T ss_dssp TTSBCTTTCCBCCBTTTEEEEEE-CSSSCEEEEEETTTCCEE
T ss_pred HHHhccCCCCEeECCCceEEEEe-cCCccEEEEECCCCCCEE
Confidence 4569999999876431 11 11 2455788888654
No 182
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=29.94 E-value=11 Score=37.90 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=0.4
Q ss_pred CCCCcCCCCCCcccccCCCCcceeecCC
Q 022283 104 ISFCQWCGGQTKHEVPHGEEKMRAICTV 131 (299)
Q Consensus 104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~ 131 (299)
-..||.||+++.... +++...+|++
T Consensus 415 P~~CP~Cgs~l~~~~---~~~~~~rC~n 439 (615)
T 3sgi_A 415 PTTCPECGSPLAPEK---EGDADIRCPN 439 (615)
T ss_dssp C---------------------------
T ss_pred CCCCCCCCCeeeecC---CCCEEEEcCC
Confidence 467999999986521 3455678875
No 183
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=29.50 E-value=10 Score=24.56 Aligned_cols=31 Identities=26% Similarity=0.467 Sum_probs=21.2
Q ss_pred CCCcCCCCCCcccccCCCCcceeecCCCCcee
Q 022283 105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (299)
Q Consensus 105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (299)
+.|..||.......-.+..|. ..|..||..+
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~ 32 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFL 32 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSC-EECHHHHHHH
T ss_pred CcCCccCCCCCCccccCCCCC-cccHHHHHHH
Confidence 469999988655443344454 7899999653
No 184
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=29.36 E-value=1.2e+02 Score=22.92 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=12.4
Q ss_pred CCEEEEEEeecCCCCCceeece
Q 022283 151 DKKILLCKRKIEPSYGLWTLPA 172 (299)
Q Consensus 151 ~~kILL~rr~~~p~~g~w~lPg 172 (299)
+-+.|++|+. ..|.-.+|.
T Consensus 72 gykylvirhp---dggthtvpk 90 (131)
T 2x5c_A 72 GYKYLVIRHP---DGGTHTVPK 90 (131)
T ss_dssp SCEEEEEECT---TSCEEECCT
T ss_pred CcEEEEEECC---CCCcccccc
Confidence 3478888754 466677774
No 185
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=29.31 E-value=18 Score=36.09 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=18.0
Q ss_pred CCCCcCCCCCCcccccCCCCcceeecCC
Q 022283 104 ISFCQWCGGQTKHEVPHGEEKMRAICTV 131 (299)
Q Consensus 104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~ 131 (299)
-.+||.||+++... +++...+|++
T Consensus 405 P~~CP~Cgs~~~~~----~~~~~~rC~n 428 (586)
T 4glx_A 405 PTHCPVCGSDVERV----EGEAVARCTG 428 (586)
T ss_dssp CSBCTTTCCBEECC----TTCSCCEESC
T ss_pred CCcCCCCCCchhhh----hcccccEeCC
Confidence 46899999998665 4556778874
No 186
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=27.94 E-value=14 Score=28.13 Aligned_cols=13 Identities=23% Similarity=0.557 Sum_probs=10.3
Q ss_pred CCCCcCCCCCCcc
Q 022283 104 ISFCQWCGGQTKH 116 (299)
Q Consensus 104 ~~fC~~CG~~~~~ 116 (299)
..-||.||+++..
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 5579999999754
No 187
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=27.38 E-value=20 Score=25.50 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=18.3
Q ss_pred cCCCCcCCCCCCcccccCCCCcceeecC-CCCc
Q 022283 103 KISFCQWCGGQTKHEVPHGEEKMRAICT-VCGK 134 (299)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~-~Cg~ 134 (299)
..+.||.||++..-.. ....+..|. .|..
T Consensus 8 ~~~~CP~Cgkp~~W~~---~~~~rPFCSeRCr~ 37 (68)
T 1lv3_A 8 ITVNCPTCGKTVVWGE---ISPFRPFCSKRCQL 37 (68)
T ss_dssp CEEECTTTCCEEECSS---SSSCCSSSSHHHHH
T ss_pred CcCcCCCCCCcccccc---cCCCCcccCHHHHh
Confidence 4467999999976431 234567776 3643
No 188
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=27.29 E-value=39 Score=26.55 Aligned_cols=27 Identities=22% Similarity=0.503 Sum_probs=21.3
Q ss_pred CCCcCCCCCCcccccCCCCcceeecCCCCceee
Q 022283 105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (299)
Q Consensus 105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (299)
..|..|+.+.... ..+.+|..||.++=
T Consensus 20 ~~C~~C~~~Fs~~------~RkHHCR~CG~ifC 46 (120)
T 1y02_A 20 PSCKSCGAHFANT------ARKQTCLDCKKNFC 46 (120)
T ss_dssp CCCTTTCCCCSSG------GGCEECTTTCCEEC
T ss_pred CcccCcCCccccc------cccccCCCCCCeeC
Confidence 6899999996543 46789999998764
No 189
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=26.93 E-value=18 Score=30.51 Aligned_cols=24 Identities=21% Similarity=0.556 Sum_probs=15.5
Q ss_pred CCcCCCCCCcccccCCCCcceeecCCCCce
Q 022283 106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKI 135 (299)
Q Consensus 106 fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~ 135 (299)
-|+.||--..-. .....||.||..
T Consensus 157 ~C~~CG~~~~g~------~~p~~CP~C~~~ 180 (191)
T 1lko_A 157 RCRNCGYVHEGT------GAPELCPACAHP 180 (191)
T ss_dssp EETTTCCEEEEE------ECCSBCTTTCCB
T ss_pred EECCCCCEeeCC------CCCCCCCCCcCC
Confidence 399999774321 122389999864
No 190
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=26.66 E-value=28 Score=24.61 Aligned_cols=7 Identities=29% Similarity=0.814 Sum_probs=3.5
Q ss_pred CcCCCCC
Q 022283 107 CQWCGGQ 113 (299)
Q Consensus 107 C~~CG~~ 113 (299)
||.|+..
T Consensus 10 Cp~C~ni 16 (66)
T 1qxf_A 10 CPDCEHE 16 (66)
T ss_dssp CTTTCCE
T ss_pred CCCCCCc
Confidence 4555444
No 191
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=26.02 E-value=43 Score=24.22 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=24.4
Q ss_pred hhhh--cCCCCcCCCCCCcccccCCCCcceeecCCCCceee
Q 022283 99 GNVL--KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (299)
Q Consensus 99 ~w~~--~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (299)
.|.. ....|..|+.+.... ..+.+|..||.++=
T Consensus 14 ~W~pd~~~~~C~~C~~~Fs~~------~RrHHCR~CG~v~C 48 (84)
T 1z2q_A 14 YWQEDEDAPACNGCGCVFTTT------VRRHHCRNCGYVLC 48 (84)
T ss_dssp CCCCTTTCCBCTTTCCBCCTT------SCCEECTTTCCEEC
T ss_pred ccccCCCCCCCcCcCCccccc------hhcccccCCCcEEC
Confidence 4754 467899999997554 35789999997654
No 192
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.68 E-value=29 Score=23.08 Aligned_cols=21 Identities=10% Similarity=0.205 Sum_probs=15.8
Q ss_pred HHHHhhhhcCCCCcCCCCCCc
Q 022283 95 VHSAGNVLKISFCQWCGGQTK 115 (299)
Q Consensus 95 ~~l~~w~~~~~fC~~CG~~~~ 115 (299)
.=+..|......||.|..++.
T Consensus 47 ~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 47 QCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp HHHHHHHHHCSSCTTTCCCCC
T ss_pred HHHHHHHHcCCCCCCCCCccC
Confidence 445667777889999988764
No 193
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.86 E-value=32 Score=24.10 Aligned_cols=20 Identities=30% Similarity=0.738 Sum_probs=9.2
Q ss_pred ceeecCCCCcee--ecCCcEEE
Q 022283 125 MRAICTVCGKIA--YQNPKMVV 144 (299)
Q Consensus 125 ~~~~C~~Cg~~~--y~~p~~vV 144 (299)
.+-.|++|+.+. |.+...+|
T Consensus 14 m~VkCp~C~~~q~VFSha~t~V 35 (63)
T 3j20_W 14 LRVKCIDCGNEQIVFSHPATKV 35 (63)
T ss_dssp EEEECSSSCCEEEEESSCSSCE
T ss_pred EEEECCCCCCeeEEEecCCeEE
Confidence 344566665432 44444333
No 194
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=24.74 E-value=20 Score=32.84 Aligned_cols=32 Identities=9% Similarity=-0.049 Sum_probs=19.6
Q ss_pred cCCCCc--CCCCCCcccccCCCCcceeecCCCCcee
Q 022283 103 KISFCQ--WCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (299)
Q Consensus 103 ~~~fC~--~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (299)
.-+=|+ .||++...... .+..-..||.|....
T Consensus 246 ~g~pC~~~~CG~~I~~~~~--~gR~t~~CP~CQ~~~ 279 (310)
T 3twl_A 246 EKKPGKAFVDGKKIDFITA--GGRTTAYVPELQKLY 279 (310)
T ss_dssp TSCTTSCEETTEECEECCE--------ECTTTCCCC
T ss_pred CCCCCCCCCCCCeEEEEEE--CCcccEECCCCcCCC
Confidence 346788 99999766543 346678999999743
No 195
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=24.24 E-value=39 Score=21.49 Aligned_cols=18 Identities=17% Similarity=0.069 Sum_probs=13.0
Q ss_pred HHhhhhcCCCCcCCCCCC
Q 022283 97 SAGNVLKISFCQWCGGQT 114 (299)
Q Consensus 97 l~~w~~~~~fC~~CG~~~ 114 (299)
+..|......||.|.+++
T Consensus 36 i~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 36 VDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp HHHTTTTCCSCSSSCCCS
T ss_pred HHHHHHcCCcCcCCCCEe
Confidence 456777778888887764
No 196
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=24.22 E-value=33 Score=32.64 Aligned_cols=34 Identities=24% Similarity=0.462 Sum_probs=21.6
Q ss_pred CCCCcCCCCCCcccc-----cCC--CCcceeecCCCCceee
Q 022283 104 ISFCQWCGGQTKHEV-----PHG--EEKMRAICTVCGKIAY 137 (299)
Q Consensus 104 ~~fC~~CG~~~~~~~-----~~~--~~~~~~~C~~Cg~~~y 137 (299)
..-||.||++...+. |.= --.....|++||+...
T Consensus 220 ~s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr~n 260 (404)
T 2qkd_A 220 NTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTN 260 (404)
T ss_dssp EECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCEEE
T ss_pred cccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCccc
Confidence 456999999865431 100 0114578999998775
No 197
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=24.14 E-value=37 Score=29.07 Aligned_cols=30 Identities=23% Similarity=0.480 Sum_probs=19.8
Q ss_pred cCCCCcCCCCCCcccccCCCCcceeecCCCCceee
Q 022283 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (299)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (299)
...-|..||.+.... ......|+.|+...-
T Consensus 9 ~~~~Cw~C~~~~~~~-----~~~~~fC~~c~~~q~ 38 (207)
T 3bvo_A 9 NYPRCWNCGGPWGPG-----REDRFFCPQCRALQA 38 (207)
T ss_dssp --CBCSSSCCBCCSS-----CSCCCBCTTTCCBCC
T ss_pred CCCCCCCCCCCcccc-----cccccccccccccCC
Confidence 456899999874211 234688999997654
No 198
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=24.04 E-value=43 Score=24.60 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=21.3
Q ss_pred CCCCcCCCCCCcccccCCCCcceeecCCCCceeec
Q 022283 104 ISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (299)
Q Consensus 104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (299)
...|..|+.+.... ..+.+|..||.++=.
T Consensus 9 ~~~C~~C~~~F~~~------~RrHHCR~CG~vfC~ 37 (88)
T 1wfk_A 9 ESRCYGCAVKFTLF------KKEYGCKNCGRAFCN 37 (88)
T ss_dssp CSBCTTTCCBCCSS------SCEEECSSSCCEEET
T ss_pred CCCCcCcCCcccCc------cccccCCCCCCEECh
Confidence 35799999986543 457889999976643
No 199
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=23.95 E-value=52 Score=24.17 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=23.3
Q ss_pred hhh--cCCCCcCCCCCCcccccCCCCcceeecCCCCceee
Q 022283 100 NVL--KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (299)
Q Consensus 100 w~~--~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (299)
|.. ....|..|+.+.... ..+.+|..||.+.=
T Consensus 14 W~~d~~~~~C~~C~~~F~~~------~RrhhCr~CG~v~C 47 (90)
T 3t7l_A 14 WVPDSEAPNCMNCQVKFTFT------KRRHHCRACGKVFC 47 (90)
T ss_dssp CCCGGGCCBCTTTCCBCCSS------SCCEECTTTCCEEC
T ss_pred CcccccCCcCcCCCCcccch------hhCccccCCCCEEC
Confidence 543 457899999987543 35788999997664
No 200
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=23.71 E-value=12 Score=26.38 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=22.3
Q ss_pred cCCCCcCCCCCCcccccCCCCcceeecCCCCcee
Q 022283 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (299)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (299)
....|..||.......=.+..|. ..|..||..+
T Consensus 8 ~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~ 40 (66)
T 4gat_A 8 GPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFL 40 (66)
T ss_dssp SSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHH
T ss_pred CCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHH
Confidence 45789999988655432234444 7899998644
No 201
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=23.48 E-value=66 Score=21.12 Aligned_cols=33 Identities=18% Similarity=0.397 Sum_probs=17.5
Q ss_pred CCCCcCCCCCCccccc----CCCC--cceeecCCCCcee
Q 022283 104 ISFCQWCGGQTKHEVP----HGEE--KMRAICTVCGKIA 136 (299)
Q Consensus 104 ~~fC~~CG~~~~~~~~----~~~~--~~~~~C~~Cg~~~ 136 (299)
..-||.||+.-..... ..|+ -.-..|..||+.+
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w 47 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 47 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeE
Confidence 3469999987432110 0011 1235788888754
No 202
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=23.25 E-value=33 Score=26.39 Aligned_cols=31 Identities=23% Similarity=0.534 Sum_probs=21.7
Q ss_pred CCcCCCCCCcccccCCCCcceeecCCCCceeec
Q 022283 106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (299)
Q Consensus 106 fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (299)
-||.||+.... +.........|..|+...+.
T Consensus 7 ~c~~c~~~n~~--p~~~~~~~~~~~~~~~~~~~ 37 (148)
T 3p2a_A 7 VCTACMATNRL--PEERIDDGAKCGRCGHSLFD 37 (148)
T ss_dssp ECTTTCCEEEE--ESSCSCSCCBCTTTCCBTTC
T ss_pred ECcccccccCC--CCcccccCCcchhcCCcccc
Confidence 49999998533 33345567789999876654
No 203
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=22.85 E-value=26 Score=34.76 Aligned_cols=34 Identities=21% Similarity=0.442 Sum_probs=20.2
Q ss_pred cCCCCcCCCCCCcccccCCCCcceeecCCCCcee
Q 022283 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (299)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (299)
..++|+.||.+...............|+.||...
T Consensus 33 ~~~~c~~c~~~~~~~~~~~~~~~~~~c~~c~~~~ 66 (681)
T 2pzi_A 33 SKRFCWNCGRPVGRSDSETKGASEGWCPYCGSPY 66 (681)
T ss_dssp GGCBCTTTCCBCSCC-----CCSEEECTTTCCEE
T ss_pred ccccCccCCCcCCCcccCCCcccCCcCCCCCCcc
Confidence 3468999999864432111222346799998754
No 204
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=22.69 E-value=27 Score=35.45 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=17.6
Q ss_pred CCCCcCCCCCCcccccCCCCcceeecCC--CC
Q 022283 104 ISFCQWCGGQTKHEVPHGEEKMRAICTV--CG 133 (299)
Q Consensus 104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~--Cg 133 (299)
-..||.||+++ . +++...+|++ |.
T Consensus 403 P~~CP~Cgs~l--~----~g~~~~~C~n~~Cp 428 (667)
T 1dgs_A 403 PEACPECGHRL--V----KEGKVHRCPNPLCP 428 (667)
T ss_dssp CSBCTTTCCBC--E----EETTEEECCCTTCG
T ss_pred CCCCCCCCCCc--c----CCCeEEEeCCCCCh
Confidence 46899999998 2 3455678886 64
No 205
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.60 E-value=31 Score=23.89 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=24.0
Q ss_pred hhhhcCCCCcCCCCCCcc--cccCCCCcceeecCCCCceee
Q 022283 99 GNVLKISFCQWCGGQTKH--EVPHGEEKMRAICTVCGKIAY 137 (299)
Q Consensus 99 ~w~~~~~fC~~CG~~~~~--~~~~~~~~~~~~C~~Cg~~~y 137 (299)
.||...--|..|+.++.. ... ..+...+|..|....+
T Consensus 26 ~wH~~CF~C~~C~~~L~~~~~f~--~~~~~~yC~~C~~~~~ 64 (73)
T 1wig_A 26 HYHPSCALCVRCGQMFAEGEEMY--LQGSSIWHPACRQAAR 64 (73)
T ss_dssp CBCTTTSCCSSSCCCCCSSCCCE--EETTEEECTTHHHHTS
T ss_pred CCCCCcCEeCCCCCCCCCCCeeE--eeCCEEEChHHChHhh
Confidence 588888889999888752 111 1233577888765443
No 206
>3bbo_3 Ribosomal protein L33; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=21.94 E-value=34 Score=24.15 Aligned_cols=14 Identities=36% Similarity=0.793 Sum_probs=11.5
Q ss_pred CCCCcCCCCCCccc
Q 022283 104 ISFCQWCGGQTKHE 117 (299)
Q Consensus 104 ~~fC~~CG~~~~~~ 117 (299)
.+|||.|...+...
T Consensus 49 kKycp~c~kHtlhk 62 (66)
T 3bbo_3 49 RKFCPYCYKHTIHG 62 (66)
T ss_dssp CCCCCSSSSCCCCC
T ss_pred EccCCCCCCeeeEE
Confidence 57999999997654
No 207
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=21.28 E-value=31 Score=30.69 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=18.6
Q ss_pred CCCcCCCCCCcccccCCCCcceeecCCCCcee
Q 022283 105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (299)
Q Consensus 105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (299)
-.|..||+........+.-.....|+.|+...
T Consensus 135 f~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~~ 166 (279)
T 1ltl_A 135 FECRGCMRHHAVTQSTNMITEPSLCSECGGRS 166 (279)
T ss_dssp EEETTTCCEEEEECSSSSCCCCSCCTTTCCCC
T ss_pred EEcCCCCCEEEEEecCCcccCCCcCCCCCCCC
Confidence 37999997643322111112345899998653
No 208
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=21.17 E-value=47 Score=27.96 Aligned_cols=26 Identities=23% Similarity=0.526 Sum_probs=18.2
Q ss_pred CCCcCCCCCCcccccCCCCcceeecCCCC
Q 022283 105 SFCQWCGGQTKHEVPHGEEKMRAICTVCG 133 (299)
Q Consensus 105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg 133 (299)
+|||.|+.+..... .+.....|..|.
T Consensus 3 ~~CpiC~k~Y~~~~---~~~~MIqCd~C~ 28 (183)
T 3lqh_A 3 NFCPLCDKCYDDDD---YESKMMQCGKCD 28 (183)
T ss_dssp CBCTTTCCBCTTCC---TTCCEEECTTTC
T ss_pred CcCCCCcCccCCcc---cCCCeEECCCCC
Confidence 68999998854430 123567899997
No 209
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=20.95 E-value=59 Score=27.14 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=18.3
Q ss_pred CCCcCCCCCCcccc-----cCCC-CcceeecCCCCcee
Q 022283 105 SFCQWCGGQTKHEV-----PHGE-EKMRAICTVCGKIA 136 (299)
Q Consensus 105 ~fC~~CG~~~~~~~-----~~~~-~~~~~~C~~Cg~~~ 136 (299)
.-||.||+.-.... ..++ --.-..|..||+.+
T Consensus 138 ~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w 175 (178)
T 3po3_S 138 FTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRW 175 (178)
T ss_dssp SCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEE
T ss_pred cCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCee
Confidence 36999998743221 0111 12345788998765
Done!