BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022284
(299 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 95/234 (40%), Gaps = 32/234 (13%)
Query: 14 GTLSCGLTHTAVTPLDLVKCNMQIDPA--------KYKSITSGFGVLLKEQGLKGFFRGW 65
G ++ ++ TAV P++ VK +Q+ A +YK I + KEQG F+RG
Sbjct: 14 GGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGN 73
Query: 66 VPTLFGYSAQGACXXXXXXXXXXXXSDIAGPEYAAKYKTLIYLAGS-ASAELIADVALC- 123
+ + Y A + G + ++ Y AG+ AS +LC
Sbjct: 74 LANVIRYFPTQALNFAFKDKYKQIF--LGGVDRHKQFWR--YFAGNLASGGAAGATSLCF 129
Query: 124 --PMEAVKVRVQTQPGFA------RGLGDGLPKFLKSDGVSGLYKGLVPLWGRQIPYTMM 175
P++ + R+ G GLG+ + K KSDG+ GLY+G I Y
Sbjct: 130 VYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAA 189
Query: 176 KFASFETIVEMLYKYAIPTPKEQCSKSLQLGVSFAGGYVAGVFCAVVSHPADNL 229
F ++T ML P P K++ + VS+ +VS+P D +
Sbjct: 190 YFGVYDTAKGML-----PDP-----KNVHIIVSWMIAQTVTAVAGLVSYPFDTV 233
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 93/245 (37%), Gaps = 37/245 (15%)
Query: 14 GTLSCGLTHTAVTPLDLVKCNMQID-----------PAKYKSITSGFGVLLKEQGLKGFF 62
GT +C + PLD K +QI A+Y+ + +++ +G + +
Sbjct: 9 GTAAC-IADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLY 67
Query: 63 RGWVPTLFGYSAQGACXXXXXXXXXXXXSDIAGPEYAAKYKTLIYLAGSASAELIADVAL 122
G V L + + + G E+A L LAGS + L VA
Sbjct: 68 NGLVAGLQRQMSFASVRIGLYDSVKQFYTK--GSEHAGIGSRL--LAGSTTGALAVAVAQ 123
Query: 123 CPMEAVKVRVQTQPGFARGLG--------DGLPKFLKSDGVSGLYKGLVPLWGRQIPYTM 174
P + VKVR Q Q AR G + + +G+ GL+KG P R
Sbjct: 124 -PTDVVKVRFQAQ---ARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNC 179
Query: 175 MKFASFETIVEMLYKYAIPTPKEQCSKSLQLGVSFAGGYVAGVFCAVVSHPADNL-VSFL 233
+ +++ I + L K + T C F + AG V++ P D + ++
Sbjct: 180 AELVTYDLIKDTLLKANLMTDDLPC--------HFTSAFGAGFCTTVIASPVDVVKTRYM 231
Query: 234 NNAKG 238
N+A G
Sbjct: 232 NSALG 236
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 20/129 (15%)
Query: 110 GSASAELIADVALCPMEAVKVRVQTQ-----------PGFARGLGDGLPKFLKSDGVSGL 158
G+ +A IAD+ P++ KVR+Q Q RG+ + ++++G L
Sbjct: 7 GAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSL 66
Query: 159 YKGLVPLWGRQIPYTMMKFASFETIVEMLYKYAIPTPKEQCSKSLQLGVSFAGGYVAGVF 218
Y GLV RQ+ + ++ ++++ + K S+ +G G G
Sbjct: 67 YNGLVAGLQRQMSFASVRIGLYDSVKQFYTK---------GSEHAGIGSRLLAGSTTGAL 117
Query: 219 CAVVSHPAD 227
V+ P D
Sbjct: 118 AVAVAQPTD 126
>pdb|2Q6U|A Chain A, Semet-Substituted Form Of Nikd
Length = 384
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 5 AFYAACTAGGTLSCGLTHTAVTPLDLVKC--NMQIDPAKYKSITSGFGVLLKEQGLKGFF 62
AF L G H P + V+C + ++DP + S +G + L G+
Sbjct: 244 AFQQPTPQDTNLFYGFGHNPWAPGEFVRCGPDFEVDPLDHPSAATGVADRRQXDRLSGWL 303
Query: 63 RGWVPTL 69
R +PT+
Sbjct: 304 RDHLPTV 310
>pdb|3HZL|A Chain A, Tyr258phe Mutant Of Nikd, An Unusual Amino Acid Oxidase
Essential For Nikkomycin Biosynthesis: Open Form At
1.55a Resolution
Length = 397
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 5 AFYAACTAGGTLSCGLTHTAVTPLDLVKC--NMQIDPAKYKSITSGFGVLLKEQGLKGFF 62
AF L G H P + V+C + ++DP + S +G + L G+
Sbjct: 245 AFQQPTPQDTNLFFGFGHNPWAPGEFVRCGPDFEVDPLDHPSAATGVADRRQMDRLSGWL 304
Query: 63 RGWVPTL 69
R +PT+
Sbjct: 305 RDHLPTV 311
>pdb|2OLN|A Chain A, Nikd, An Unusual Amino Acid Oxidase Essential For
Nikkomycin Biosynthesis: Closed Form At 1.15 A
Resolution
pdb|2OLO|A Chain A, Nikd, An Unusual Amino Acid Oxidase Essential For
Nikkomycin Biosynthesis: Open Form At 1.9a Resolution
Length = 397
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 5 AFYAACTAGGTLSCGLTHTAVTPLDLVKC--NMQIDPAKYKSITSGFGVLLKEQGLKGFF 62
AF L G H P + V+C + ++DP + S +G + L G+
Sbjct: 245 AFQQPTPQDTNLFYGFGHNPWAPGEFVRCGPDFEVDPLDHPSAATGVADRRQMDRLSGWL 304
Query: 63 RGWVPTL 69
R +PT+
Sbjct: 305 RDHLPTV 311
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,194,240
Number of Sequences: 62578
Number of extensions: 317577
Number of successful extensions: 490
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 483
Number of HSP's gapped (non-prelim): 6
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)