Query 022284
Match_columns 299
No_of_seqs 154 out of 1702
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 16:55:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022284.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022284hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 1.7E-55 6E-60 381.6 25.0 268 4-283 4-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 2.2E-55 7.6E-60 381.8 22.4 262 10-285 4-288 (303)
3 2lck_A Mitochondrial uncouplin 100.0 1.3E-35 4.5E-40 257.4 13.2 180 7-190 104-289 (303)
4 1okc_A ADP, ATP carrier protei 100.0 2E-34 6.8E-39 249.4 17.6 178 102-284 5-202 (297)
5 4b19_A PEPA1; toxin, toxin apo 36.1 10 0.00035 19.5 0.5 24 205-228 3-26 (30)
6 3f2e_A SIRV coat protein; four 27.8 40 0.0014 21.6 2.3 37 35-71 1-41 (100)
7 3tgu_G UQCRQ, mitochondrial ub 19.3 1.2E+02 0.0041 19.7 3.4 34 158-191 37-70 (81)
8 2a3d_A Protein (de novo three- 17.4 1.2E+02 0.004 18.1 2.8 39 27-65 10-48 (73)
9 3vjj_A P9-1; 3.00A {Rice black 16.1 86 0.0029 25.7 2.6 34 217-250 273-308 (368)
10 2acm_A Mucin-1; auto-catalytic 15.1 25 0.00086 21.3 -0.6 19 141-159 41-59 (66)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.7e-55 Score=381.60 Aligned_cols=268 Identities=23% Similarity=0.288 Sum_probs=231.5
Q ss_pred hHHHHHHHHHHHHHhhhhhcccchhhhhhhhhhcCC--------CCCCChHHHHHHHHHhhchhhhhhchhHhHHhHhhh
Q 022284 4 PAFYAACTAGGTLSCGLTHTAVTPLDLVKCNMQIDP--------AKYKSITSGFGVLLKEQGLKGFFRGWVPTLFGYSAQ 75 (299)
Q Consensus 4 ~~~~~~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~--------~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~ 75 (299)
+..+...+++|+++++++.++++|+|++|+|+|++. ..++++++++++++++||++|||||+.+++++.++.
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 345678899999999999999999999999999874 257899999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHhcCC------CCCCCHHhHHHHH
Q 022284 76 GACKFGFYEFFKKYYSDIAGPEYAAKYKTLIYLAGSASAELIADVALCPMEAVKVRVQTQP------GFARGLGDGLPKF 149 (299)
Q Consensus 76 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~Pld~iktr~q~~~------~~~~~~~~~~~~i 149 (299)
.+++|.+|+.+++.+....+.+..........+++|++||+++.++++|+|+||+|+|++. .+|++.+++++++
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i 163 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKI 163 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHH
Confidence 9999999999999654322222222234566889999999999999999999999999874 3688999999999
Q ss_pred HHhcCccccccchHHHHhhHhhHHHHHHHHHHHHHHHHHhccCCCCccccccccchhHHHHhHHHHHHhHHhhhcchhHH
Q 022284 150 LKSDGVSGLYKGLVPLWGRQIPYTMMKFASFETIVEMLYKYAIPTPKEQCSKSLQLGVSFAGGYVAGVFCAVVSHPADNL 229 (299)
Q Consensus 150 ~~~~G~~gly~G~~~~~l~~~~~~~~~~~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~Pld~v 229 (299)
+++||++|||||+.+++++.+++.+++|.+||.+|+.+.+. ...+....+++|+++|++++++++|+|+|
T Consensus 164 ~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~----------~~~~~~~~~~~g~~ag~~a~~~t~P~dvv 233 (297)
T 1okc_A 164 FKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP----------KNVHIIVSWMIAQTVTAVAGLVSYPFDTV 233 (297)
T ss_dssp HHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG----------GCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC----------CCccHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 99999999999999999999999999999999999865332 12346678999999999999999999999
Q ss_pred HHHHhccCC------------chHHHHHHHhchhhhhhcCcchhHHHHhhhhHHHHHHHHHHHHHh
Q 022284 230 VSFLNNAKG------------ASVGDAVKKMGLWGLCTRGLPLRIVMIGTLTGAQWGIYDAFKVFV 283 (299)
Q Consensus 230 r~r~q~~~~------------~~~~~i~~~~G~~~~y~rG~~~~~~~~~~~~~~~~~~~e~~~~~~ 283 (299)
|+|||.+.. +++++|+|+||++||| ||+.|+++|. +..++.|.+||.+++.+
T Consensus 234 ktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~gly-rG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 234 RRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFF-KGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGG-TTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEe-cchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 999998641 5799999999999999 8999999995 67899999999988753
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.2e-55 Score=381.82 Aligned_cols=262 Identities=19% Similarity=0.305 Sum_probs=235.9
Q ss_pred HHHHHHHHhhhhhcccchhhhhhhhhhcCCC-----------CCCChHHHHHHHHHhhchhhhhhchhHhHHhHhhhhhh
Q 022284 10 CTAGGTLSCGLTHTAVTPLDLVKCNMQIDPA-----------KYKSITSGFGVLLKEQGLKGFFRGWVPTLFGYSAQGAC 78 (299)
Q Consensus 10 ~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~-----------~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~ 78 (299)
.+++|++|++++.+++||+|++|+|+|++.. .++++++++++++++||+++||||+.+++++.+++.++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 4678888899999999999999999999753 57899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHhcCCC-----CCCCHHhHHHHHHHhc
Q 022284 79 KFGFYEFFKKYYSDIAGPEYAAKYKTLIYLAGSASAELIADVALCPMEAVKVRVQTQPG-----FARGLGDGLPKFLKSD 153 (299)
Q Consensus 79 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~Pld~iktr~q~~~~-----~~~~~~~~~~~i~~~~ 153 (299)
+|.+|+.+++.+.+..+ ..+....+++|++||+++.++++|+|+||+|+|++.. +|++.++++++|+++|
T Consensus 84 ~f~~ye~~k~~~~~~~~-----~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~e 158 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSE-----HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREE 158 (303)
T ss_dssp TTTHHHHHHHHHSCCCS-----SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCc-----CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhc
Confidence 99999999998865321 1345678899999999999999999999999998753 6899999999999999
Q ss_pred CccccccchHHHHhhHhhHHHHHHHHHHHHHHHHHhccCCCCccccccccchhHHHHhHHHHHHhHHhhhcchhHHHHHH
Q 022284 154 GVSGLYKGLVPLWGRQIPYTMMKFASFETIVEMLYKYAIPTPKEQCSKSLQLGVSFAGGYVAGVFCAVVSHPADNLVSFL 233 (299)
Q Consensus 154 G~~gly~G~~~~~l~~~~~~~~~~~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~Pld~vr~r~ 233 (299)
|++|||||+.+++++.+++.+++|.+||.+|+.+.+... ...+...++++|++||++++++++|+|+||+||
T Consensus 159 G~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~--------~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrl 230 (303)
T 2lck_A 159 GIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL--------MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRY 230 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS--------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC--------CCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 999999999999999999999999999999998765421 123456789999999999999999999999999
Q ss_pred hccCC-------chHHHHHHHhchhhhhhcCcchhHHHHhhhhHHHHHHHHHHHHHhCC
Q 022284 234 NNAKG-------ASVGDAVKKMGLWGLCTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGL 285 (299)
Q Consensus 234 q~~~~-------~~~~~i~~~~G~~~~y~rG~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 285 (299)
|.+.. +++++|+|+||++||| ||+.++++|.+|..++.|.+||.+++.+..
T Consensus 231 q~~~~~~y~~~~~~~~~i~~~eG~~gly-rG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 231 MNSALGQYHSAGHCALTMLRKEGPRAFY-KGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp TTCCSSSCCSHHHHHHHHHHSSCTHHHH-SCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HhccccccCCHHHHHHHHHHHcChHHhh-ccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 98752 6899999999999999 899999999999999999999999988753
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.3e-35 Score=257.42 Aligned_cols=180 Identities=18% Similarity=0.330 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHhhhhhcccchhhhhhhhhhcCCC-----CCCChHHHHHHHHHhhchhhhhhchhHhHHhHhhhhhhHHH
Q 022284 7 YAACTAGGTLSCGLTHTAVTPLDLVKCNMQIDPA-----KYKSITSGFGVLLKEQGLKGFFRGWVPTLFGYSAQGACKFG 81 (299)
Q Consensus 7 ~~~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~-----~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~ 81 (299)
....+++|+++++++.++++|+|++|+|+|.+.. .+++.++++++++++||++|||||+.+++++.++..+++|.
T Consensus 104 ~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~ 183 (303)
T 2lck_A 104 IGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELV 183 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999753 57899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCCchhhhhHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHhcCCC-CCCCHHhHHHHHHHhcCcccccc
Q 022284 82 FYEFFKKYYSDIAGPEYAAKYKTLIYLAGSASAELIADVALCPMEAVKVRVQTQPG-FARGLGDGLPKFLKSDGVSGLYK 160 (299)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~Pld~iktr~q~~~~-~~~~~~~~~~~i~~~~G~~gly~ 160 (299)
+|+.+++.+.+..... ......+++|++||+++.++++|+|+||+|+|++.. .|+++++++++++++||++||||
T Consensus 184 ~ye~~k~~l~~~~~~~----~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyr 259 (303)
T 2lck_A 184 TYDLIKDTLLKANLMT----DDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYK 259 (303)
T ss_dssp HHHHHHHTTTTTTSCC----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHS
T ss_pred HHHHHHHHHHhccCCC----CchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhc
Confidence 9999999887543211 234567899999999999999999999999999853 68999999999999999999999
Q ss_pred chHHHHhhHhhHHHHHHHHHHHHHHHHHhc
Q 022284 161 GLVPLWGRQIPYTMMKFASFETIVEMLYKY 190 (299)
Q Consensus 161 G~~~~~l~~~~~~~~~~~~ye~~~~~~~~~ 190 (299)
|+.++++|.+|..+++|.+||.+|+.+.+.
T Consensus 260 G~~~~~~r~~p~~~i~f~~ye~~k~~l~~~ 289 (303)
T 2lck_A 260 GFMPSFLRLGSWNVVMFVTYEQLKRALMAA 289 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999876443
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2e-34 Score=249.37 Aligned_cols=178 Identities=22% Similarity=0.250 Sum_probs=155.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHhcCC--------CCCCCHHhHHHHHHHhcCccccccchHHHHhhHhhHH
Q 022284 102 YKTLIYLAGSASAELIADVALCPMEAVKVRVQTQP--------GFARGLGDGLPKFLKSDGVSGLYKGLVPLWGRQIPYT 173 (299)
Q Consensus 102 ~~~~~~~~~g~~ag~~~~~v~~Pld~iktr~q~~~--------~~~~~~~~~~~~i~~~~G~~gly~G~~~~~l~~~~~~ 173 (299)
.+.+..+++|++||+++.++++|+|++|+|+|++. ..|++.++++++++++||++|||||+.+.+++.++..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 35567899999999999999999999999999874 2689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCccccccccchhHHHHhHHHHHHhHHhhhcchhHHHHHHhccCC------------chH
Q 022284 174 MMKFASFETIVEMLYKYAIPTPKEQCSKSLQLGVSFAGGYVAGVFCAVVSHPADNLVSFLNNAKG------------ASV 241 (299)
Q Consensus 174 ~~~~~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~Pld~vr~r~q~~~~------------~~~ 241 (299)
+++|.+||.+|+.+...... ..+.......++++|++||++++++++|+|+||+|||.+.. +++
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~----~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~ 160 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDR----HKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCI 160 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCT----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHH
T ss_pred HHHHHHHHHHHHHhccccCc----ccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHH
Confidence 99999999999965432111 00111245678999999999999999999999999998731 578
Q ss_pred HHHHHHhchhhhhhcCcchhHHHHhhhhHHHHHHHHHHHHHhC
Q 022284 242 GDAVKKMGLWGLCTRGLPLRIVMIGTLTGAQWGIYDAFKVFVG 284 (299)
Q Consensus 242 ~~i~~~~G~~~~y~rG~~~~~~~~~~~~~~~~~~~e~~~~~~~ 284 (299)
++|+++||++||| ||+.++++|.+|..++.|.+||.+++.+.
T Consensus 161 ~~i~~~eG~~gly-rG~~~~l~~~~~~~~~~f~~ye~~k~~~~ 202 (297)
T 1okc_A 161 TKIFKSDGLRGLY-QGFNVSVQGIIIYRAAYFGVYDTAKGMLP 202 (297)
T ss_dssp HHHHHHHCHHHHT-TTHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhccHHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999 89999999999999999999999999774
No 5
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=36.10 E-value=10 Score=19.54 Aligned_cols=24 Identities=17% Similarity=0.049 Sum_probs=19.3
Q ss_pred hhHHHHhHHHHHHhHHhhhcchhH
Q 022284 205 LGVSFAGGYVAGVFCAVVSHPADN 228 (299)
Q Consensus 205 ~~~~~~~g~~ag~~~~~~~~Pld~ 228 (299)
.+++.++-.++|++-++++|.|+.
T Consensus 3 ifv~iia~visGcivalF~hWL~~ 26 (30)
T 4b19_A 3 IFVHIIAPVISGCAIAFFSYWLSR 26 (30)
T ss_dssp GGTSSTTTTHHHHHHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHHHHHHHHHHh
Confidence 456677788899999999999874
No 6
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=27.77 E-value=40 Score=21.64 Aligned_cols=37 Identities=16% Similarity=0.446 Sum_probs=21.1
Q ss_pred hhcCCCCCCChHHHHHHHHHhhch----hhhhhchhHhHHh
Q 022284 35 MQIDPAKYKSITSGFGVLLKEQGL----KGFFRGWVPTLFG 71 (299)
Q Consensus 35 ~q~~~~~~~~~~~~~~~i~~~~G~----~~ly~G~~~~~~~ 71 (299)
+|++-+++.++-.-...++.+-|+ +.+|+|++.-+.|
T Consensus 1 mqtnvpkftsvne~vsavltqygvtgpnraiyqgfglkvar 41 (100)
T 3f2e_A 1 MQTNVPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVAR 41 (100)
T ss_dssp -------CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHH
T ss_pred CCCCCccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHH
Confidence 356656777777777777887776 5677777665544
No 7
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=19.32 E-value=1.2e+02 Score=19.73 Aligned_cols=34 Identities=3% Similarity=0.018 Sum_probs=25.9
Q ss_pred cccchHHHHhhHhhHHHHHHHHHHHHHHHHHhcc
Q 022284 158 LYKGLVPLWGRQIPYTMMKFASFETIVEMLYKYA 191 (299)
Q Consensus 158 ly~G~~~~~l~~~~~~~~~~~~ye~~~~~~~~~~ 191 (299)
.+|-+...++..+|..++.+.+|+..++.-....
T Consensus 37 ~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~ 70 (81)
T 3tgu_G 37 VWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3444566778888999999999999988876653
No 8
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=17.44 E-value=1.2e+02 Score=18.05 Aligned_cols=39 Identities=10% Similarity=-0.006 Sum_probs=20.7
Q ss_pred hhhhhhhhhhcCCCCCCChHHHHHHHHHhhchhhhhhch
Q 022284 27 PLDLVKCNMQIDPAKYKSITSGFGVLLKEQGLKGFFRGW 65 (299)
Q Consensus 27 Pld~ik~~~q~~~~~~~~~~~~~~~i~~~~G~~~ly~G~ 65 (299)
-+..||+|+|.-+..-..+..+-++|..-|.-..-|+|-
T Consensus 10 rlaaiktrlqalggseaelaafekeiaafeselqaykgk 48 (73)
T 2a3d_A 10 RLAAIKTRLQALGGSEAELAAFEKEIAAFESELQAYKGK 48 (73)
T ss_dssp HHHHHHHHHHHCSSGGGTHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhccC
Confidence 456789999986543234444444444433333445543
No 9
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=16.14 E-value=86 Score=25.69 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=27.6
Q ss_pred HhHHhhhcchhHHHHHHhcc--CCchHHHHHHHhch
Q 022284 217 VFCAVVSHPADNLVSFLNNA--KGASVGDAVKKMGL 250 (299)
Q Consensus 217 ~~~~~~~~Pld~vr~r~q~~--~~~~~~~i~~~~G~ 250 (299)
.++++=.||||.+|-.++.. ....+.+.+.++|+
T Consensus 273 qLaTFdnypfdllRfqL~Slistp~~I~e~i~K~GL 308 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSLISTPALIREKIAKEGL 308 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSCCCCCHHHHHHHHHSCS
T ss_pred eeecCCCCCHHHHHHHhhhhccChHHHHHHHHhcCc
Confidence 46778889999999988764 35779999999974
No 10
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=15.13 E-value=25 Score=21.31 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=15.5
Q ss_pred CHHhHHHHHHHhcCccccc
Q 022284 141 GLGDGLPKFLKSDGVSGLY 159 (299)
Q Consensus 141 ~~~~~~~~i~~~~G~~gly 159 (299)
++.+.+.+||+++++.|++
T Consensus 41 ~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 41 DISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHccCCeeeee
Confidence 5677888899999988875
Done!