Query 022285
Match_columns 299
No_of_seqs 283 out of 1915
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 02:21:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022285.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022285hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4020 Protein DRE2, required 100.0 4.1E-46 8.8E-51 329.0 12.7 235 11-277 4-255 (257)
2 PF05093 CIAPIN1: Cytokine-ind 100.0 6.2E-40 1.3E-44 258.0 5.3 77 184-260 1-95 (100)
3 COG5636 Uncharacterized conser 100.0 1.5E-39 3.2E-44 285.1 5.0 244 8-272 3-272 (284)
4 COG2226 UbiE Methylase involve 99.5 2.2E-13 4.7E-18 124.4 9.0 98 6-103 51-164 (238)
5 PLN02232 ubiquinone biosynthes 99.3 2E-11 4.3E-16 104.8 10.1 78 21-98 2-84 (160)
6 PF01209 Ubie_methyltran: ubiE 99.3 5.2E-12 1.1E-16 115.1 6.4 82 18-99 74-157 (233)
7 KOG1540 Ubiquinone biosynthesi 99.2 2.7E-11 5.8E-16 110.7 8.4 84 16-99 130-218 (296)
8 PLN02233 ubiquinone biosynthes 99.2 8.4E-11 1.8E-15 108.7 10.2 82 18-99 100-186 (261)
9 PF08241 Methyltransf_11: Meth 99.2 3.6E-11 7.7E-16 91.6 4.9 76 16-93 19-95 (95)
10 PRK11873 arsM arsenite S-adeno 99.1 1.1E-09 2.3E-14 101.1 13.9 123 4-126 75-229 (272)
11 PLN02244 tocopherol O-methyltr 99.0 1.4E-09 2.9E-14 104.3 9.4 123 5-127 117-278 (340)
12 PTZ00098 phosphoethanolamine N 99.0 3E-09 6.4E-14 98.5 9.8 109 18-127 77-202 (263)
13 PLN02490 MPBQ/MSBQ methyltrans 98.9 4.7E-09 1E-13 100.7 10.2 141 6-148 113-283 (340)
14 KOG4300 Predicted methyltransf 98.9 2.9E-09 6.3E-14 94.9 8.0 96 16-111 99-198 (252)
15 TIGR02752 MenG_heptapren 2-hep 98.9 1.5E-08 3.2E-13 90.9 10.6 81 18-98 72-154 (231)
16 PLN02336 phosphoethanolamine N 98.8 2.8E-08 6E-13 98.9 11.0 108 18-125 291-412 (475)
17 PLN02396 hexaprenyldihydroxybe 98.7 2.5E-08 5.5E-13 95.1 6.6 109 17-125 154-287 (322)
18 PRK10258 biotin biosynthesis p 98.7 3.4E-08 7.3E-13 90.0 7.0 80 18-101 66-146 (251)
19 TIGR00740 methyltransferase, p 98.6 7.7E-08 1.7E-12 87.2 7.6 78 18-97 81-163 (239)
20 PRK11036 putative S-adenosyl-L 98.6 7.8E-08 1.7E-12 88.2 5.5 81 17-97 67-151 (255)
21 PF13847 Methyltransf_31: Meth 98.5 1.3E-07 2.8E-12 79.7 5.8 81 16-97 28-112 (152)
22 PRK15068 tRNA mo(5)U34 methylt 98.5 4.3E-07 9.3E-12 86.6 9.9 108 19-127 148-274 (322)
23 PRK08317 hypothetical protein; 98.5 4.1E-07 8.9E-12 80.7 9.1 107 19-125 47-174 (241)
24 PRK00216 ubiE ubiquinone/menaq 98.5 1E-06 2.2E-11 78.5 11.4 80 18-97 78-160 (239)
25 PRK15451 tRNA cmo(5)U34 methyl 98.5 4E-07 8.7E-12 83.3 8.6 78 18-97 84-166 (247)
26 TIGR02072 BioC biotin biosynth 98.5 5.9E-07 1.3E-11 79.8 8.4 78 19-99 61-139 (240)
27 smart00828 PKS_MT Methyltransf 98.4 5.2E-07 1.1E-11 80.5 7.6 110 17-127 24-144 (224)
28 PF13649 Methyltransf_25: Meth 98.4 1.2E-07 2.5E-12 74.6 2.8 73 17-89 25-101 (101)
29 TIGR01934 MenG_MenH_UbiE ubiqu 98.4 2.3E-06 4.9E-11 75.5 10.9 79 18-97 66-145 (223)
30 PRK14103 trans-aconitate 2-met 98.4 3.2E-07 7E-12 84.0 5.0 73 17-96 54-127 (255)
31 TIGR00452 methyltransferase, p 98.3 1.5E-06 3.3E-11 82.7 8.4 109 18-127 146-273 (314)
32 PRK05785 hypothetical protein; 98.3 1.5E-06 3.3E-11 78.8 7.7 64 18-88 76-140 (226)
33 PRK11207 tellurite resistance 98.3 1.1E-06 2.4E-11 77.8 6.6 79 16-95 52-134 (197)
34 PRK00107 gidB 16S rRNA methylt 98.3 4.7E-06 1E-10 73.7 10.3 98 16-125 69-167 (187)
35 TIGR00477 tehB tellurite resis 98.3 1.2E-06 2.7E-11 77.3 6.3 80 16-96 52-134 (195)
36 COG2227 UbiG 2-polyprenyl-3-me 98.3 4.9E-07 1.1E-11 82.4 3.0 83 16-98 81-164 (243)
37 PF12847 Methyltransf_18: Meth 98.3 1.6E-06 3.4E-11 68.6 5.6 80 15-95 24-111 (112)
38 smart00138 MeTrc Methyltransfe 98.3 8.1E-07 1.8E-11 82.4 4.3 80 17-96 133-243 (264)
39 PRK00121 trmB tRNA (guanine-N( 98.2 3.6E-06 7.9E-11 74.8 8.0 100 17-123 65-177 (202)
40 PF13489 Methyltransf_23: Meth 98.2 1.7E-06 3.6E-11 72.2 5.5 82 43-124 62-160 (161)
41 TIGR02716 C20_methyl_CrtF C-20 98.2 1.2E-05 2.5E-10 75.7 10.6 76 19-97 176-256 (306)
42 PRK01683 trans-aconitate 2-met 98.2 2.7E-06 6E-11 77.7 6.0 75 17-96 56-131 (258)
43 PRK06922 hypothetical protein; 98.2 2.2E-06 4.8E-11 88.2 5.8 80 18-97 444-539 (677)
44 COG2521 Predicted archaeal met 98.2 4.5E-06 9.8E-11 76.0 6.9 83 42-126 186-276 (287)
45 TIGR00537 hemK_rel_arch HemK-r 98.2 1.5E-05 3.4E-10 69.0 9.9 99 18-125 43-163 (179)
46 PRK11088 rrmA 23S rRNA methylt 98.1 3E-06 6.5E-11 78.5 5.5 71 19-99 115-185 (272)
47 PRK05134 bifunctional 3-demeth 98.1 2E-05 4.3E-10 70.8 10.3 119 7-125 49-203 (233)
48 PRK04266 fibrillarin; Provisio 98.1 3.1E-05 6.6E-10 70.5 11.5 119 5-130 71-213 (226)
49 PF05148 Methyltransf_8: Hypot 98.1 4.4E-06 9.4E-11 75.0 5.7 80 42-126 105-184 (219)
50 TIGR00091 tRNA (guanine-N(7)-) 98.1 1.1E-05 2.5E-10 71.1 8.3 101 17-124 41-155 (194)
51 KOG3045 Predicted RNA methylas 98.1 7.9E-06 1.7E-10 75.4 6.8 79 42-125 211-289 (325)
52 TIGR00138 gidB 16S rRNA methyl 98.1 1.9E-05 4.2E-10 69.2 8.9 99 18-125 68-167 (181)
53 PRK12335 tellurite resistance 98.1 7.2E-06 1.6E-10 76.7 6.5 79 16-95 142-223 (287)
54 PF08242 Methyltransf_12: Meth 98.1 5.1E-07 1.1E-11 70.3 -1.0 76 16-91 20-99 (99)
55 PLN02336 phosphoethanolamine N 98.1 9.7E-06 2.1E-10 80.7 7.7 105 19-124 62-179 (475)
56 KOG3010 Methyltransferase [Gen 97.9 4.3E-06 9.4E-11 76.3 2.3 83 16-98 55-140 (261)
57 TIGR01983 UbiG ubiquinone bios 97.9 3.2E-05 6.9E-10 68.8 7.9 79 19-97 70-151 (224)
58 COG4106 Tam Trans-aconitate me 97.9 1E-05 2.2E-10 73.0 3.9 80 14-98 52-132 (257)
59 PLN03075 nicotianamine synthas 97.9 3.4E-05 7.5E-10 72.8 7.4 76 19-95 152-233 (296)
60 TIGR01177 conserved hypothetic 97.9 5E-05 1.1E-09 72.4 8.5 97 19-126 207-314 (329)
61 PTZ00146 fibrillarin; Provisio 97.8 0.00064 1.4E-08 64.2 14.8 126 4-131 130-275 (293)
62 PRK13942 protein-L-isoaspartat 97.8 8.9E-05 1.9E-09 66.4 7.8 86 5-95 75-176 (212)
63 TIGR02469 CbiT precorrin-6Y C5 97.8 6E-05 1.3E-09 60.1 5.9 77 17-95 44-122 (124)
64 TIGR03534 RF_mod_PrmC protein- 97.7 0.00024 5.2E-09 64.1 9.6 99 18-125 113-239 (251)
65 PRK08287 cobalt-precorrin-6Y C 97.7 0.00017 3.6E-09 62.9 7.8 96 19-125 58-154 (187)
66 KOG1270 Methyltransferases [Co 97.6 3.6E-05 7.8E-10 71.2 3.2 79 16-97 111-197 (282)
67 PRK06202 hypothetical protein; 97.6 8.8E-05 1.9E-09 66.9 5.7 77 18-98 90-169 (232)
68 PRK00377 cbiT cobalt-precorrin 97.6 0.0003 6.6E-09 62.0 8.9 98 18-125 67-167 (198)
69 PRK13944 protein-L-isoaspartat 97.6 0.00011 2.3E-09 65.5 5.9 73 18-95 99-173 (205)
70 PRK14968 putative methyltransf 97.6 0.00031 6.7E-09 60.4 8.6 100 18-125 47-171 (188)
71 TIGR02021 BchM-ChlM magnesium 97.6 0.00014 3E-09 65.0 6.4 74 18-94 79-157 (219)
72 PF05401 NodS: Nodulation prot 97.6 0.00012 2.6E-09 65.3 5.8 108 19-128 68-180 (201)
73 PRK14967 putative methyltransf 97.6 0.00036 7.8E-09 62.7 9.0 96 18-121 61-178 (223)
74 PRK11705 cyclopropane fatty ac 97.6 0.00011 2.5E-09 71.7 6.0 76 17-97 191-269 (383)
75 TIGR03587 Pse_Me-ase pseudamin 97.6 0.00014 3E-09 65.0 6.0 73 18-97 69-144 (204)
76 KOG2940 Predicted methyltransf 97.6 4.3E-05 9.4E-10 69.6 2.6 77 20-97 99-176 (325)
77 PF02353 CMAS: Mycolic acid cy 97.5 0.00017 3.8E-09 67.3 5.8 91 4-97 60-168 (273)
78 PRK14121 tRNA (guanine-N(7)-)- 97.5 0.00026 5.5E-09 69.4 6.8 78 19-96 149-236 (390)
79 TIGR00080 pimt protein-L-isoas 97.4 0.00046 1E-08 61.7 7.7 72 19-95 105-177 (215)
80 PF03848 TehB: Tellurite resis 97.4 0.00031 6.7E-09 62.5 5.7 82 15-97 51-135 (192)
81 TIGR03840 TMPT_Se_Te thiopurin 97.4 0.00051 1.1E-08 61.9 6.9 81 16-96 56-153 (213)
82 PF08003 Methyltransf_9: Prote 97.3 0.00095 2.1E-08 63.2 8.8 88 42-130 166-270 (315)
83 TIGR03438 probable methyltrans 97.2 0.0006 1.3E-08 64.3 6.3 82 16-97 88-179 (301)
84 PRK09489 rsmC 16S ribosomal RN 97.2 0.00053 1.2E-08 66.1 6.0 78 18-97 222-305 (342)
85 PRK09328 N5-glutamine S-adenos 97.2 0.0023 4.9E-08 58.8 9.9 99 18-125 134-260 (275)
86 PRK07580 Mg-protoporphyrin IX 97.2 0.001 2.2E-08 59.3 7.4 83 7-92 64-163 (230)
87 PRK11188 rrmJ 23S rRNA methylt 97.2 0.0014 2.9E-08 58.8 7.9 95 4-98 49-168 (209)
88 cd02440 AdoMet_MTases S-adenos 97.2 0.0011 2.3E-08 49.4 5.9 79 16-94 21-103 (107)
89 KOG1541 Predicted protein carb 97.1 0.0024 5.1E-08 58.1 8.7 93 21-122 77-182 (270)
90 PF13659 Methyltransf_26: Meth 97.1 0.00041 8.9E-09 55.1 3.4 80 17-96 24-116 (117)
91 PRK15001 SAM-dependent 23S rib 97.1 0.0012 2.6E-08 64.5 7.1 79 17-96 253-341 (378)
92 PF05175 MTS: Methyltransferas 97.0 0.0014 3E-08 56.6 6.1 78 19-97 58-142 (170)
93 COG4123 Predicted O-methyltran 97.0 0.0048 1E-07 57.0 9.8 121 17-145 69-212 (248)
94 PRK00312 pcm protein-L-isoaspa 97.0 0.0028 6E-08 56.3 7.9 86 6-96 78-176 (212)
95 PRK01581 speE spermidine synth 97.0 0.0043 9.4E-08 60.4 9.4 103 19-124 177-294 (374)
96 PRK13255 thiopurine S-methyltr 97.0 0.0021 4.6E-08 58.1 6.7 87 7-93 38-153 (218)
97 TIGR03533 L3_gln_methyl protei 96.9 0.0049 1.1E-07 57.8 9.2 96 18-123 147-270 (284)
98 PRK14966 unknown domain/N5-glu 96.9 0.0057 1.2E-07 60.5 9.9 100 18-125 277-403 (423)
99 PRK00517 prmA ribosomal protei 96.9 0.0024 5.2E-08 58.5 6.6 91 19-126 145-237 (250)
100 PRK10611 chemotaxis methyltran 96.9 0.0013 2.8E-08 62.1 4.8 55 41-95 204-262 (287)
101 PLN02585 magnesium protoporphy 96.8 0.0044 9.5E-08 59.2 8.2 104 17-125 167-297 (315)
102 PF05891 Methyltransf_PK: AdoM 96.8 0.00097 2.1E-08 60.3 3.5 109 18-126 80-200 (218)
103 KOG2361 Predicted methyltransf 96.8 0.0034 7.3E-08 57.7 6.9 83 42-124 127-234 (264)
104 PRK13943 protein-L-isoaspartat 96.8 0.0036 7.7E-08 60.0 7.3 86 5-95 79-180 (322)
105 TIGR00536 hemK_fam HemK family 96.7 0.0065 1.4E-07 56.7 8.3 99 18-125 140-267 (284)
106 PF01739 CheR: CheR methyltran 96.7 0.0024 5.2E-08 56.9 4.9 55 41-95 118-175 (196)
107 TIGR00406 prmA ribosomal prote 96.7 0.0046 9.9E-08 58.0 6.9 75 19-97 185-261 (288)
108 PRK11805 N5-glutamine S-adenos 96.6 0.01 2.2E-07 56.4 8.8 97 18-124 159-283 (307)
109 KOG1269 SAM-dependent methyltr 96.6 0.0039 8.4E-08 60.7 6.1 56 42-97 161-217 (364)
110 COG2519 GCD14 tRNA(1-methylade 96.6 0.0094 2E-07 55.1 8.1 99 17-127 120-220 (256)
111 PRK00811 spermidine synthase; 96.6 0.0039 8.5E-08 58.4 5.7 77 19-95 103-191 (283)
112 TIGR00446 nop2p NOL1/NOP2/sun 96.6 0.0068 1.5E-07 56.1 7.2 79 18-96 98-200 (264)
113 PF00891 Methyltransf_2: O-met 96.5 0.012 2.6E-07 53.2 8.5 55 40-97 142-201 (241)
114 PRK10901 16S rRNA methyltransf 96.5 0.0063 1.4E-07 60.2 7.2 79 18-96 270-373 (427)
115 COG2230 Cfa Cyclopropane fatty 96.5 0.0042 9.1E-08 58.4 5.6 91 5-98 71-179 (283)
116 PRK03612 spermidine synthase; 96.5 0.0052 1.1E-07 62.4 6.7 100 18-120 323-437 (521)
117 PRK07402 precorrin-6B methylas 96.5 0.0049 1.1E-07 54.1 5.7 78 17-97 65-144 (196)
118 KOG1331 Predicted methyltransf 96.5 0.0022 4.8E-08 60.1 3.4 73 21-98 70-146 (293)
119 TIGR00438 rrmJ cell division p 96.4 0.015 3.4E-07 50.6 8.2 93 5-97 31-148 (188)
120 TIGR02081 metW methionine bios 96.4 0.0024 5.3E-08 56.0 3.2 61 21-87 41-104 (194)
121 PRK14901 16S rRNA methyltransf 96.4 0.0075 1.6E-07 59.8 6.9 78 19-96 280-385 (434)
122 PF01135 PCMT: Protein-L-isoas 96.4 0.011 2.5E-07 53.1 7.3 88 4-96 70-173 (209)
123 PHA03411 putative methyltransf 96.4 0.011 2.4E-07 55.4 7.4 100 17-123 89-210 (279)
124 PRK14903 16S rRNA methyltransf 96.2 0.0086 1.9E-07 59.5 6.2 80 18-97 264-368 (431)
125 TIGR00563 rsmB ribosomal RNA s 96.2 0.012 2.5E-07 58.3 7.0 80 18-97 264-370 (426)
126 PRK04457 spermidine synthase; 96.2 0.012 2.7E-07 54.5 6.6 80 18-97 92-179 (262)
127 COG2518 Pcm Protein-L-isoaspar 96.1 0.022 4.7E-07 51.3 7.7 87 5-96 71-170 (209)
128 PRK14904 16S rRNA methyltransf 96.1 0.013 2.7E-07 58.4 6.8 79 18-97 277-379 (445)
129 PF08704 GCD14: tRNA methyltra 96.1 0.029 6.3E-07 51.8 8.7 94 23-127 72-171 (247)
130 PRK14902 16S rRNA methyltransf 96.1 0.013 2.8E-07 58.2 6.7 78 18-96 277-380 (444)
131 TIGR03704 PrmC_rel_meth putati 96.0 0.038 8.2E-07 50.9 9.0 95 18-122 112-235 (251)
132 COG1041 Predicted DNA modifica 96.0 0.037 8.1E-07 53.4 9.1 99 16-126 219-329 (347)
133 TIGR00417 speE spermidine synt 96.0 0.034 7.3E-07 51.6 8.5 89 6-94 72-185 (270)
134 COG4627 Uncharacterized protei 96.0 0.0015 3.2E-08 56.4 -0.6 48 50-97 38-88 (185)
135 PRK01544 bifunctional N5-gluta 95.9 0.028 6E-07 57.0 8.1 99 18-125 164-291 (506)
136 PRK13256 thiopurine S-methyltr 95.9 0.013 2.9E-07 53.4 5.2 82 15-96 64-164 (226)
137 PF06080 DUF938: Protein of un 95.8 0.089 1.9E-06 47.3 9.9 41 56-96 99-142 (204)
138 PF03141 Methyltransf_29: Puta 95.7 0.0077 1.7E-07 60.4 3.0 68 50-117 172-243 (506)
139 COG0500 SmtA SAM-dependent met 95.6 0.076 1.6E-06 40.6 7.8 77 22-98 78-158 (257)
140 PF11968 DUF3321: Putative met 95.5 0.038 8.2E-07 50.1 6.4 84 45-128 87-182 (219)
141 PLN02366 spermidine synthase 95.4 0.022 4.7E-07 54.3 5.0 90 5-94 90-205 (308)
142 PF02390 Methyltransf_4: Putat 95.4 0.039 8.4E-07 49.0 6.2 96 22-124 47-157 (195)
143 COG1352 CheR Methylase of chem 95.4 0.027 6E-07 52.6 5.4 56 41-96 184-242 (268)
144 PF06859 Bin3: Bicoid-interact 95.3 0.0077 1.7E-07 48.9 1.2 36 59-94 1-43 (110)
145 KOG1271 Methyltransferases [Ge 95.3 0.089 1.9E-06 46.8 7.9 100 18-125 93-203 (227)
146 COG2242 CobL Precorrin-6B meth 95.3 0.22 4.7E-06 44.2 10.3 92 20-121 62-154 (187)
147 PF01269 Fibrillarin: Fibrilla 95.1 0.28 6.1E-06 44.8 10.7 121 4-131 71-216 (229)
148 COG4976 Predicted methyltransf 95.0 0.016 3.5E-07 53.1 2.6 104 20-127 151-265 (287)
149 COG2813 RsmC 16S RNA G1207 met 94.7 0.076 1.7E-06 50.3 6.4 78 17-96 183-267 (300)
150 PF07942 N2227: N2227-like pro 94.6 0.078 1.7E-06 49.7 6.2 88 40-127 143-242 (270)
151 PLN02781 Probable caffeoyl-CoA 94.6 0.043 9.4E-07 50.0 4.3 78 17-96 94-179 (234)
152 smart00650 rADc Ribosomal RNA 94.4 0.1 2.2E-06 44.7 5.9 75 18-95 37-113 (169)
153 PF01234 NNMT_PNMT_TEMT: NNMT/ 94.3 0.24 5.1E-06 46.1 8.6 68 59-126 158-238 (256)
154 PF07021 MetW: Methionine bios 94.3 0.039 8.4E-07 49.1 3.3 91 3-96 10-110 (193)
155 PF01170 UPF0020: Putative RNA 94.3 0.11 2.4E-06 45.3 6.1 93 21-125 66-169 (179)
156 COG4798 Predicted methyltransf 94.2 0.21 4.5E-06 44.9 7.5 86 40-126 104-204 (238)
157 KOG1975 mRNA cap methyltransfe 93.9 0.068 1.5E-06 51.3 4.2 83 14-96 135-238 (389)
158 PLN02672 methionine S-methyltr 93.8 0.33 7.2E-06 53.5 9.8 104 17-129 143-305 (1082)
159 PRK00536 speE spermidine synth 93.7 0.2 4.4E-06 46.7 6.8 98 16-124 94-196 (262)
160 COG4122 Predicted O-methyltran 93.6 0.08 1.7E-06 48.1 4.0 81 16-98 84-169 (219)
161 PF05724 TPMT: Thiopurine S-me 93.6 0.27 5.9E-06 44.5 7.4 108 15-123 58-186 (218)
162 COG0220 Predicted S-adenosylme 93.5 0.19 4.2E-06 45.8 6.3 74 23-96 79-165 (227)
163 PF01564 Spermine_synth: Sperm 93.5 0.45 9.8E-06 43.7 8.8 111 7-120 77-213 (246)
164 KOG2899 Predicted methyltransf 93.3 0.1 2.2E-06 48.3 4.1 41 54-94 161-208 (288)
165 PF05219 DREV: DREV methyltran 93.3 0.11 2.5E-06 48.2 4.5 38 57-94 149-187 (265)
166 KOG2352 Predicted spermine/spe 93.2 0.21 4.5E-06 50.2 6.4 76 21-96 76-162 (482)
167 KOG1661 Protein-L-isoaspartate 93.0 0.3 6.5E-06 44.3 6.6 71 21-96 113-194 (237)
168 PLN02823 spermine synthase 92.7 0.16 3.5E-06 49.0 4.7 76 20-95 131-220 (336)
169 PRK13699 putative methylase; P 92.4 0.3 6.4E-06 44.4 5.9 77 45-129 4-99 (227)
170 PRK11783 rlmL 23S rRNA m(2)G24 92.4 0.37 8.1E-06 50.8 7.4 97 19-123 564-676 (702)
171 COG2264 PrmA Ribosomal protein 92.4 0.7 1.5E-05 43.9 8.5 61 58-127 228-288 (300)
172 PHA03412 putative methyltransf 92.1 0.28 6.1E-06 45.2 5.4 69 17-90 77-158 (241)
173 KOG1709 Guanidinoacetate methy 92.1 0.26 5.6E-06 45.0 4.9 72 22-97 134-208 (271)
174 PF06325 PrmA: Ribosomal prote 91.9 0.45 9.7E-06 45.1 6.6 108 5-126 160-282 (295)
175 PF03291 Pox_MCEL: mRNA cappin 91.6 0.6 1.3E-05 45.0 7.2 77 21-97 90-188 (331)
176 PRK13168 rumA 23S rRNA m(5)U19 91.6 0.7 1.5E-05 45.9 7.9 97 19-126 322-423 (443)
177 PF03141 Methyltransf_29: Puta 91.4 0.17 3.6E-06 51.1 3.2 47 51-97 419-469 (506)
178 PRK15128 23S rRNA m(5)C1962 me 91.2 0.94 2E-05 44.6 8.3 78 18-95 245-339 (396)
179 COG0421 SpeE Spermidine syntha 91.0 0.27 5.8E-06 46.4 4.1 77 18-94 102-189 (282)
180 PF05430 Methyltransf_30: S-ad 91.0 0.2 4.4E-06 41.4 2.9 72 42-124 32-108 (124)
181 COG1092 Predicted SAM-dependen 90.9 1.2 2.5E-05 44.0 8.6 113 7-121 218-360 (393)
182 PRK11524 putative methyltransf 90.8 0.23 5E-06 46.4 3.5 53 43-95 9-80 (284)
183 PF03269 DUF268: Caenorhabditi 90.5 0.33 7.2E-06 42.3 3.8 70 57-126 61-144 (177)
184 PLN02476 O-methyltransferase 90.4 0.28 6.1E-06 46.1 3.6 76 19-96 146-229 (278)
185 PRK10909 rsmD 16S rRNA m(2)G96 90.0 0.65 1.4E-05 41.4 5.5 92 6-97 53-161 (199)
186 PRK01544 bifunctional N5-gluta 89.3 0.67 1.4E-05 47.1 5.6 57 40-96 396-463 (506)
187 PF01596 Methyltransf_3: O-met 89.1 0.23 5E-06 44.5 1.9 79 17-97 71-157 (205)
188 COG2890 HemK Methylase of poly 89.0 2.6 5.7E-05 39.5 9.0 97 18-124 136-260 (280)
189 TIGR00479 rumA 23S rRNA (uraci 88.8 1.6 3.6E-05 43.0 7.8 107 7-123 293-416 (431)
190 PLN02589 caffeoyl-CoA O-methyl 88.4 0.33 7.2E-06 44.8 2.5 77 18-96 106-191 (247)
191 PF01861 DUF43: Protein of unk 88.0 5.4 0.00012 36.8 10.1 115 7-125 45-176 (243)
192 PF02527 GidB: rRNA small subu 85.6 1.5 3.2E-05 38.7 4.9 75 40-123 97-171 (184)
193 PF03059 NAS: Nicotianamine sy 84.6 1.6 3.5E-05 41.0 4.9 73 23-95 153-230 (276)
194 COG3963 Phospholipid N-methylt 83.7 1.4 3.1E-05 38.7 3.9 60 38-97 91-158 (194)
195 PRK03522 rumB 23S rRNA methylu 83.1 2.1 4.6E-05 40.5 5.2 77 18-96 197-275 (315)
196 KOG3201 Uncharacterized conser 82.5 2.3 5E-05 37.3 4.6 63 55-123 99-162 (201)
197 PF06962 rRNA_methylase: Putat 82.3 2.6 5.7E-05 35.7 4.9 75 23-97 6-94 (140)
198 PF10354 DUF2431: Domain of un 82.0 8.7 0.00019 33.2 8.1 73 49-126 61-151 (166)
199 PF08090 Enterotoxin_HS1: Heat 81.8 0.54 1.2E-05 29.7 0.4 21 232-252 7-28 (36)
200 PRK11933 yebU rRNA (cytosine-C 81.6 2.7 5.9E-05 42.4 5.5 74 22-95 144-242 (470)
201 PRK11783 rlmL 23S rRNA m(2)G24 80.0 3.7 8E-05 43.4 6.1 79 18-96 258-348 (702)
202 TIGR02085 meth_trns_rumB 23S r 79.5 6 0.00013 38.5 7.0 76 18-95 257-334 (374)
203 PF09243 Rsm22: Mitochondrial 79.5 6.1 0.00013 36.8 6.8 99 20-125 62-166 (274)
204 COG1889 NOP1 Fibrillarin-like 78.7 39 0.00084 30.8 11.2 121 4-131 74-218 (231)
205 PF11899 DUF3419: Protein of u 78.7 3.9 8.4E-05 40.2 5.4 58 41-98 275-337 (380)
206 TIGR03439 methyl_EasF probable 78.3 6.6 0.00014 37.7 6.7 75 21-95 109-197 (319)
207 PF12147 Methyltransf_20: Puta 77.4 14 0.00031 35.2 8.5 107 19-125 164-296 (311)
208 PRK14896 ksgA 16S ribosomal RN 77.1 8.1 0.00018 35.4 6.8 63 6-71 29-103 (258)
209 KOG3987 Uncharacterized conser 76.0 1.6 3.6E-05 39.7 1.8 65 22-94 140-206 (288)
210 COG0357 GidB Predicted S-adeno 75.3 13 0.00027 33.8 7.4 112 7-126 68-194 (215)
211 COG0742 N6-adenine-specific me 75.0 21 0.00045 31.7 8.5 93 6-98 43-157 (187)
212 PF10672 Methyltrans_SAM: S-ad 74.8 2.3 4.9E-05 40.2 2.5 79 19-97 149-240 (286)
213 KOG1663 O-methyltransferase [S 74.5 3.7 8.1E-05 37.7 3.7 82 11-95 93-183 (237)
214 KOG2798 Putative trehalase [Ca 74.5 7.4 0.00016 37.5 5.8 69 58-126 258-336 (369)
215 COG5459 Predicted rRNA methyla 74.5 9.1 0.0002 37.6 6.5 97 19-119 141-246 (484)
216 PF10294 Methyltransf_16: Puta 73.9 6.1 0.00013 34.1 4.8 58 40-97 96-158 (173)
217 TIGR00095 RNA methyltransferas 73.3 14 0.0003 32.5 7.0 90 7-96 50-160 (189)
218 PRK01747 mnmC bifunctional tRN 71.8 7 0.00015 40.8 5.5 71 42-123 148-223 (662)
219 PF05185 PRMT5: PRMT5 arginine 71.4 10 0.00022 38.0 6.4 52 39-92 239-294 (448)
220 PF02475 Met_10: Met-10+ like- 70.5 13 0.00028 33.3 6.2 50 39-92 150-199 (200)
221 PRK04338 N(2),N(2)-dimethylgua 69.7 5.7 0.00012 39.0 4.1 73 19-94 84-157 (382)
222 KOG3178 Hydroxyindole-O-methyl 68.8 11 0.00024 36.6 5.7 54 41-97 221-277 (342)
223 PLN02668 indole-3-acetate carb 68.8 11 0.00024 37.2 5.8 78 49-126 152-277 (386)
224 PF11253 DUF3052: Protein of u 68.6 22 0.00047 29.7 6.6 69 57-127 43-111 (127)
225 PF14740 DUF4471: Domain of un 66.1 12 0.00026 35.5 5.3 64 57-124 220-286 (289)
226 PF03492 Methyltransf_7: SAM d 62.7 25 0.00055 33.8 7.0 81 47-127 95-222 (334)
227 COG0144 Sun tRNA and rRNA cyto 62.7 13 0.00029 35.9 5.1 76 20-95 186-288 (355)
228 KOG1499 Protein arginine N-met 61.9 12 0.00026 36.3 4.5 53 40-92 108-164 (346)
229 PF03602 Cons_hypoth95: Conser 61.3 5.8 0.00013 34.8 2.1 93 6-98 42-156 (183)
230 COG0116 Predicted N6-adenine-s 60.2 17 0.00037 35.8 5.3 76 21-96 259-345 (381)
231 COG4262 Predicted spermidine s 59.1 17 0.00037 36.0 4.9 113 8-123 291-432 (508)
232 TIGR00755 ksgA dimethyladenosi 56.5 15 0.00032 33.5 4.0 66 19-91 54-122 (253)
233 PF01555 N6_N4_Mtase: DNA meth 55.9 7.4 0.00016 33.7 1.9 24 74-97 35-58 (231)
234 COG2520 Predicted methyltransf 55.2 66 0.0014 31.3 8.4 114 3-120 185-313 (341)
235 KOG2904 Predicted methyltransf 53.2 60 0.0013 31.0 7.4 81 16-96 172-286 (328)
236 PF13909 zf-H2C2_5: C2H2-type 52.2 5.5 0.00012 22.7 0.3 11 244-254 1-11 (24)
237 PHA02826 IL-1 receptor-like pr 51.7 6.6 0.00014 35.7 0.9 27 243-271 16-42 (227)
238 PF13578 Methyltransf_24: Meth 50.4 6 0.00013 30.7 0.3 55 40-95 48-105 (106)
239 KOG1500 Protein arginine N-met 50.3 34 0.00074 33.6 5.4 65 26-92 209-279 (517)
240 TIGR01053 LSD1 zinc finger dom 50.1 7.4 0.00016 24.4 0.6 15 236-250 3-26 (31)
241 PF06557 DUF1122: Protein of u 46.1 51 0.0011 28.8 5.3 71 75-148 66-142 (170)
242 KOG1099 SAM-dependent methyltr 45.6 31 0.00067 32.1 4.1 57 41-97 89-165 (294)
243 COG0293 FtsJ 23S rRNA methylas 43.6 91 0.002 28.1 6.8 59 40-98 84-162 (205)
244 PRK00274 ksgA 16S ribosomal RN 42.7 11 0.00024 34.8 0.9 61 6-68 42-114 (272)
245 PRK00432 30S ribosomal protein 41.9 13 0.00028 25.8 0.9 9 243-251 37-45 (50)
246 KOG1562 Spermidine synthase [A 38.0 1.1E+02 0.0023 29.6 6.5 56 40-95 174-236 (337)
247 PRK05031 tRNA (uracil-5-)-meth 37.8 76 0.0017 30.7 5.9 83 9-95 209-320 (362)
248 TIGR00308 TRM1 tRNA(guanine-26 37.7 35 0.00076 33.5 3.5 74 19-95 72-147 (374)
249 KOG1596 Fibrillarin and relate 37.4 3.6E+02 0.0078 25.4 9.9 117 3-126 153-294 (317)
250 PF05566 Pox_vIL-18BP: Orthopo 37.0 8.5 0.00018 31.3 -0.7 13 243-257 36-49 (126)
251 KOG2906 RNA polymerase III sub 37.0 14 0.0003 29.5 0.5 10 243-252 21-30 (105)
252 PHA01519 hypothetical protein 36.8 18 0.0004 29.4 1.2 20 250-269 21-40 (115)
253 COG2813 RsmC 16S RNA G1207 met 36.4 97 0.0021 29.6 6.1 38 59-96 37-74 (300)
254 PRK09489 rsmC 16S ribosomal RN 35.7 45 0.00097 32.2 3.9 40 58-97 75-114 (342)
255 cd05565 PTS_IIB_lactose PTS_II 35.6 97 0.0021 24.5 5.1 76 9-94 2-77 (99)
256 PF01558 POR: Pyruvate ferredo 34.4 80 0.0017 26.8 4.9 45 45-96 42-87 (173)
257 PRK11727 23S rRNA mA1618 methy 34.0 1.4E+02 0.003 28.7 6.9 53 19-71 141-201 (321)
258 COG4121 Uncharacterized conser 33.9 1.7E+02 0.0037 27.2 7.2 73 41-124 146-226 (252)
259 KOG1122 tRNA and rRNA cytosine 33.1 1.7E+02 0.0036 29.6 7.3 55 40-95 291-371 (460)
260 PTZ00338 dimethyladenosine tra 33.0 25 0.00054 33.2 1.6 52 19-72 61-114 (294)
261 PF05484 LRV_FeS: LRV protein 32.7 24 0.00053 25.3 1.1 14 243-256 11-24 (57)
262 PF04816 DUF633: Family of unk 32.2 1.5E+02 0.0033 26.5 6.4 95 21-127 26-124 (205)
263 PF12511 DUF3716: Protein of u 31.7 20 0.00043 25.5 0.6 15 233-247 40-57 (60)
264 TIGR00853 pts-lac PTS system, 31.5 79 0.0017 24.6 4.0 72 8-89 4-75 (95)
265 COG2265 TrmA SAM-dependent met 31.5 76 0.0016 31.8 4.8 96 16-121 315-414 (432)
266 COG3086 RseC Positive regulato 31.1 21 0.00045 30.5 0.7 11 232-242 21-31 (150)
267 PF08123 DOT1: Histone methyla 31.1 57 0.0012 29.2 3.5 53 40-92 100-155 (205)
268 PF10058 DUF2296: Predicted in 30.6 25 0.00055 24.8 0.9 10 243-252 44-53 (54)
269 TIGR02143 trmA_only tRNA (urac 30.2 59 0.0013 31.4 3.7 83 9-95 200-311 (353)
270 PF02384 N6_Mtase: N-6 DNA Met 30.1 1.4E+02 0.003 27.7 6.1 98 23-122 84-208 (311)
271 PF04672 Methyltransf_19: S-ad 30.0 1.5E+02 0.0032 27.9 6.2 57 43-99 123-194 (267)
272 COG2263 Predicted RNA methylas 29.4 99 0.0021 27.8 4.6 95 17-125 69-166 (198)
273 COG2093 DNA-directed RNA polym 29.2 13 0.00029 27.2 -0.7 8 202-209 3-10 (64)
274 PF01728 FtsJ: FtsJ-like methy 28.2 49 0.0011 28.1 2.5 41 58-98 90-142 (181)
275 TIGR00006 S-adenosyl-methyltra 27.6 61 0.0013 31.0 3.2 24 74-97 219-242 (305)
276 COG0275 Predicted S-adenosylme 26.6 67 0.0015 30.8 3.3 24 74-97 223-246 (314)
277 KOG2539 Mitochondrial/chloropl 24.7 1.8E+02 0.0038 29.7 5.9 86 11-99 219-319 (491)
278 PF08468 MTS_N: Methyltransfer 24.2 78 0.0017 27.1 3.0 39 57-95 67-105 (155)
279 PRK00050 16S rRNA m(4)C1402 me 23.7 80 0.0017 30.0 3.2 24 74-97 215-238 (296)
280 COG5561 Predicted metal-bindin 23.4 34 0.00073 27.0 0.5 13 239-252 64-76 (101)
281 COG4332 Uncharacterized protei 23.3 31 0.00068 30.6 0.4 16 233-248 16-33 (203)
282 TIGR02987 met_A_Alw26 type II 22.3 4.4E+02 0.0096 26.6 8.5 19 79-97 180-198 (524)
283 PF06283 ThuA: Trehalose utili 22.0 5.4E+02 0.012 22.5 9.0 38 58-95 51-88 (217)
284 PF01795 Methyltransf_5: MraW 20.8 70 0.0015 30.7 2.2 24 74-97 220-243 (310)
285 cd01098 PAN_AP_plant Plant PAN 20.5 29 0.00062 25.3 -0.4 9 203-211 38-47 (84)
286 cd05564 PTS_IIB_chitobiose_lic 20.3 1.6E+02 0.0034 22.8 3.8 76 9-94 1-77 (96)
287 KOG4477 RING1 interactor RYBP 20.1 33 0.00071 30.5 -0.2 27 233-259 23-55 (228)
No 1
>KOG4020 consensus Protein DRE2, required for cell viability [Function unknown]
Probab=100.00 E-value=4.1e-46 Score=328.99 Aligned_cols=235 Identities=29% Similarity=0.367 Sum_probs=152.4
Q ss_pred EEEecCCccChHHHHHHHHHHHHHHhhhc--CCCeEEEeccCCCCCCCCCceeEEEecCccCCCChHHHHHHHHHhccCC
Q 022285 11 LALSEDKILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPG 88 (299)
Q Consensus 11 LlL~~~~~vt~~dlse~m~~~A~~~~~~~--~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPG 88 (299)
|++.+. ..+.++..+-..+++.-.+... ...+..+.+....+ +.++||+.+... .|...-.+....+..|+|+
T Consensus 4 l~~~l~-~~~~~~~~~~~K~~~~i~~~~ggdl~li~~~~~~~~t~--~~~~~e~~~~e~--a~~~~~~V~~l~~~~l~P~ 78 (257)
T KOG4020|consen 4 LLLCLT-GTTTSELAELLKAQALIKAVKGGDLFLINKVNGSVSTL--ENARYELLTPEA--ATLSGLKVKSLLRASLKPE 78 (257)
T ss_pred eeEEec-ccchhhHHHHHHhHHhhhcccCcchhheeccccccccc--cccceeccchhh--ccccccchhhhhhcccCcc
Confidence 555555 5566777776666665322221 23344444444444 477899554432 2322114566677899999
Q ss_pred cEEEEEecCCCCccchHHHHHHHHHHHHHCCceeceeecccccC--ccceeeeeeeecCCCCCcCCccccccCcc-----
Q 022285 89 GTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVV--PAEVVSFGVKGKKPTWKIGSSFAIKKAPK----- 161 (299)
Q Consensus 89 G~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~~~kp~~--~~~~~~~~i~a~KP~~~~gs~~~l~~~~~----- 161 (299)
|.+.+.++... - +++.....+.|+.+.. |..+.. .+.+ |+.....+++.++.+.+
T Consensus 79 gtl~v~s~~g~----~----~~~l~~~~i~g~~~~~--~~s~d~~s~~ql--------kl~~~K~ss~~~q~a~k~~~~k 140 (257)
T KOG4020|consen 79 GTLSVLSHIGH----A----DDLLLFVKITGEKDYC--WISPDVSSANQL--------KLSITKKSSPSLQSASKNAAAK 140 (257)
T ss_pred ceEehhhhccc----h----hhHHHHHHHhCCcccc--ccCccccccccc--------cccceeccCcccccccccHHHH
Confidence 99998776421 1 1445667888888753 222221 1111 23333333333332211
Q ss_pred cc-----cccccCCCCCccCcCcCCCccccCCCCCCCCC-CCCCCCCccCCCCCccchHHHHHHHHhcCCCccccCCCCC
Q 022285 162 SL-----AKLQVDDDSDLIDEDTLLTEEDLKKPQLPSVG-DCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQS 235 (299)
Q Consensus 162 ~~-----~~~~~d~d~dlIded~Ll~~~dl~~p~~~~~~-~C~~~~krkACknCtCGlaE~e~~~~~~~~~~~~~~~~~s 235 (299)
.+ ..+..|.++|+||||+||+|||+.+|++.+.. .|++++||||||||||||||+||.|.. ......+++|
T Consensus 141 nl~s~sand~s~d~~~dlide~elldee~~~k~~~~~~~a~~~~~kKkkaCk~CtcGl~Ee~E~Eks---~~q~s~~~~s 217 (257)
T KOG4020|consen 141 NLWSLSANDMSDDLRQDLIDEEELLDEEDLKKPDPASLRASCSPGKKKKACKNCTCGLAEEEEKEKS---REQISSNPKS 217 (257)
T ss_pred HhhhhhccccccchhhhccChhhccCHhhcCCCCccccccCCCCcccchhhhcCCcccHHHHHhhhh---hhhhccCccc
Confidence 11 12233445799999999999999999988765 899999999999999999999997742 2223456999
Q ss_pred CCCcchh--hhccCCCCCCCCCCCCCCCCCCCCcEEeecCCCcc
Q 022285 236 ACGSVMW--TWRCFPLRYMPLQGSASIQTGREGVTVKQLPRSRH 277 (299)
Q Consensus 236 sCGsC~L--AFRC~~CPYlGlPaFkp~~~~~~~~~~~~~~~~~~ 277 (299)
+|||||| ||||+||||||||||| ||++|.+-+++-+
T Consensus 218 ~CGnCylGdaFrCs~CPylG~Pafk------PGe~v~ls~~~~~ 255 (257)
T KOG4020|consen 218 ACGNCYLGDAFRCSGCPYLGMPAFK------PGEKVLLSDNSDK 255 (257)
T ss_pred ccCcccccccceecCCCcCCCCCCC------CCCeEEecccccc
Confidence 9999999 9999999999999999 5677877666544
No 2
>PF05093 CIAPIN1: Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis; InterPro: IPR007785 Anamorsin, subsequently named CIAPIN1 for cytokine-induced anti-apoptosis inhibitor 1, in humans is the homologue of yeast Dre2, a conserved soluble eukaryotic Fe-S cluster protein, that functions in cytosolic Fe-S protein biogenesis. It is found in both the cytoplasm and in the mitochondrial intermembrane space (IMS) []. CIAPIN1 is found to be up-regulated in hepatocellular cancer, is considered to be a downstream effector of the receptor tyrosine kinase-Ras signalling pathway, and is essential in mouse definitive haematopoiesis []. In addition, it has also anti-apoptotic effects in the cell. It is involved in negative control of cell death upon cytokine withdrawal and promotes development of hematopoietic cells [].
Probab=100.00 E-value=6.2e-40 Score=258.00 Aligned_cols=77 Identities=44% Similarity=0.742 Sum_probs=63.3
Q ss_pred cccCCCCCCCCCCCCCC--CCccCCCCCccchHHHHHHHHhc---------CCCccc-----cCCCCCCCCcchh--hhc
Q 022285 184 EDLKKPQLPSVGDCEVG--STRKACKNCICGRAEAEEKVEKL---------GLTMDQ-----LKNPQSACGSVMW--TWR 245 (299)
Q Consensus 184 ~dl~~p~~~~~~~C~~~--~krkACknCtCGlaE~e~~~~~~---------~~~~~~-----~~~~~ssCGsC~L--AFR 245 (299)
|||++|.+..+.+|+++ +||||||||||||||+|+++.+. +++.++ +..++|||||||| |||
T Consensus 1 eDlkkp~~~~~~~C~~~~~kkrrACKnCTCGlaE~~e~e~~~~~~~~~~~~~~~~~~l~e~~~~~~~ssCGsC~LGDAFR 80 (100)
T PF05093_consen 1 EDLKKPDLVSPKDCGPGCKKKRRACKNCTCGLAEEEEAEKKNARAAQQKALKFTEDELTEITVEGKKSSCGSCYLGDAFR 80 (100)
T ss_pred CCcccCCCcccccccCCccccccccccCCcchHHHhcchhhhhhhhhhhhcccccchhhhhhcccccCccccccccccce
Confidence 68999987777899976 78999999999999998765321 223333 3358999999999 999
Q ss_pred cCCCCCCCCCCCCCC
Q 022285 246 CFPLRYMPLQGSASI 260 (299)
Q Consensus 246 C~~CPYlGlPaFkp~ 260 (299)
|+|||||||||||||
T Consensus 81 Ca~CPYlGlPaFkpG 95 (100)
T PF05093_consen 81 CAGCPYLGLPAFKPG 95 (100)
T ss_pred ecCCCcCCCCCCCCC
Confidence 999999999999965
No 3
>COG5636 Uncharacterized conserved protein, contains Zn-ribbon-like motif [Function unknown]
Probab=100.00 E-value=1.5e-39 Score=285.14 Aligned_cols=244 Identities=21% Similarity=0.208 Sum_probs=139.6
Q ss_pred ceEEEEecCCccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCcc-CCCC-hHHHHHHHHHhc
Q 022285 8 SAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS-HELP-GDQLLEEISRVL 85 (299)
Q Consensus 8 ~~vLlL~~~~~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~-~~~~-~~~~L~ei~RvL 85 (299)
.+|++|+.++...+..-...+...|.++.....+.|--+. .+.++| -+.||.+++-.-. .|-. ....|.+.+--|
T Consensus 3 ~tV~~LT~~~~t~~~~~~K~i~~L~DNGs~~~L~~I~kV~-~LiN~~--IN~~D~~~~~mD~~~~n~Tv~~~L~k~~tnl 79 (284)
T COG5636 3 ETVHYLTPEAQTDIKFPKKLISVLADNGSLIGLSDIYKVD-ALINEI--INEPDYCWIKMDSSKLNQTVSIPLKKKKTNL 79 (284)
T ss_pred ceeEEeCCccccchhhhhhhhheeccCccccchHHHHHHH-HHHhhh--ccCCceEEEEcccchhhccccchhhhhhccc
Confidence 4799999988887666555555555443211111111111 222333 5678887765432 2222 234567777779
Q ss_pred cCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCceecee-ecccccCcccee--eeeeeecCCCCCcCCcc-cccc-Cc
Q 022285 86 KPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR-IQLKSVVPAEVV--SFGVKGKKPTWKIGSSF-AIKK-AP 160 (299)
Q Consensus 86 KPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~-~~~kp~~~~~~~--~~~i~a~KP~~~~gs~~-~l~~-~~ 160 (299)
.|||+|-...-...... .+.....++|...+.. .|.+|-. ..+. ...++-..-- ..+.. .++. ..
T Consensus 80 ~~G~~L~~~~~A~~s~~-------n~~~~A~~S~~~I~~~t~~~~~~~-~k~~t~P~~~~~~d~~--~edk~~~~~~l~S 149 (284)
T COG5636 80 QSGSKLPTFKKASSSTS-------NLPKKADHSRQPIVKETDSFKPPS-FKMTTEPKVYRVVDDL--MEDKEELRKLLRS 149 (284)
T ss_pred CCCCcccceeccccccc-------cccchhhhcCCceeecCccccCCC-ccceecceEEeecccc--cccHHHHHHHHhh
Confidence 99999965543322111 2334455566554433 2222210 0000 0000000000 00000 0000 00
Q ss_pred ccccccccCCCCCccCcCcCCCccccCCCCCCCCCCCCC--CCCccCCCCCccchHHHHHHH-------HhcCCCccccC
Q 022285 161 KSLAKLQVDDDSDLIDEDTLLTEEDLKKPQLPSVGDCEV--GSTRKACKNCICGRAEAEEKV-------EKLGLTMDQLK 231 (299)
Q Consensus 161 ~~~~~~~~d~d~dlIded~Ll~~~dl~~p~~~~~~~C~~--~~krkACknCtCGlaE~e~~~-------~~~~~~~~~~~ 231 (299)
+...-...|+|+++|+||+||||+.-.+-... ..|.+ |+|+|||||||||++|+||.+ +.+|||+++++
T Consensus 150 ~~q~~~~~dtd~~~i~edEllde~s~d~~i~~--~ec~p~~~kKKrACKdCTCGlkE~eE~E~~rt~Q~~~VK~Te~~~~ 227 (284)
T COG5636 150 KAQYMMRKDTDPRTIMEDELLDEDSEDKAIQR--SECPPSKTKKKRACKDCTCGLKEEEENEIVRTRQDKVVKFTEDELT 227 (284)
T ss_pred hhHhhhccCCChhhhhhhhhhccccccceeec--ccCCCCcchhhhhcccCCccchhhhhhhhhhhhhhhheecccccee
Confidence 00111234678899999999999532222221 46864 789999999999999998854 45789988766
Q ss_pred C--------CCCCCCcchh--hhccCCCCCCCCCCCCCCCCCCCCcEEeec
Q 022285 232 N--------PQSACGSVMW--TWRCFPLRYMPLQGSASIQTGREGVTVKQL 272 (299)
Q Consensus 232 ~--------~~ssCGsC~L--AFRC~~CPYlGlPaFkp~~~~~~~~~~~~~ 272 (299)
+ ++|+|||||| ||||+||||||||||+ ||.+|.+-
T Consensus 228 e~~~~i~~K~Vs~CGnCylGDAFRCSGCPylGlPaf~------PGd~v~~~ 272 (284)
T COG5636 228 EIDFTIDGKKVSACGNCYLGDAFRCSGCPYLGLPAFE------PGDVVSFS 272 (284)
T ss_pred eeeeeeccccccccccccccccceecCCCccCCCCCC------CCceeeee
Confidence 5 5899999999 9999999999999998 55677653
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=2.2e-13 Score=124.39 Aligned_cols=98 Identities=20% Similarity=0.243 Sum_probs=83.7
Q ss_pred ccceEEEEecCC--------------ccChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCCCCCCceeEEEecCccC
Q 022285 6 MQSAVLALSEDK--------------ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSH 70 (299)
Q Consensus 6 ~~~~vLlL~~~~--------------~vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~ 70 (299)
.|.+||-|.-|+ .++..|+++.|++.|+++.... ..++.|+++|+++|||+|++||+|.+.+.++
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr 130 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR 130 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence 467777776553 5678899999999999887654 3459999999999999999999999999999
Q ss_pred CCC-hHHHHHHHHHhccCCcEEEEEecCCCCccc
Q 022285 71 ELP-GDQLLEEISRVLKPGGTILIYKKLTSDKGD 103 (299)
Q Consensus 71 ~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~ 103 (299)
+++ .+.+|+|++|+|||||++++.+......+.
T Consensus 131 nv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~ 164 (238)
T COG2226 131 NVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPV 164 (238)
T ss_pred cCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchh
Confidence 998 789999999999999999999887654433
No 5
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.28 E-value=2e-11 Score=104.82 Aligned_cols=78 Identities=17% Similarity=0.090 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHHHhhhc----CCCeEEEeccCCCCCCCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEEEEe
Q 022285 21 VSAVLNAIRDLGDEAVEQC----DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYK 95 (299)
Q Consensus 21 ~~dlse~m~~~A~~~~~~~----~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~ 95 (299)
..|+++.|++.|+++.... ..++.++++|++++|+++++||+|++.+++|+++ ...+++|++|+|||||.|+|.+
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d 81 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILD 81 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence 4588999999997654321 3479999999999999999999999999999887 7889999999999999999998
Q ss_pred cCC
Q 022285 96 KLT 98 (299)
Q Consensus 96 ~~~ 98 (299)
+..
T Consensus 82 ~~~ 84 (160)
T PLN02232 82 FNK 84 (160)
T ss_pred CCC
Confidence 764
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.28 E-value=5.2e-12 Score=115.14 Aligned_cols=82 Identities=21% Similarity=0.292 Sum_probs=63.7
Q ss_pred ccChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCCCCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEEEEe
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYK 95 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~ 95 (299)
.++..|+++.|++.|++++... ..++.++++|+++|||++++||+|++.+.+++++ ...+++|++|+|||||+|+|.+
T Consensus 74 ~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 74 KVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 3456699999999999887654 4599999999999999999999999999999987 7889999999999999999998
Q ss_pred cCCC
Q 022285 96 KLTS 99 (299)
Q Consensus 96 ~~~~ 99 (299)
....
T Consensus 154 ~~~p 157 (233)
T PF01209_consen 154 FSKP 157 (233)
T ss_dssp EEB-
T ss_pred ccCC
Confidence 7643
No 7
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.23 E-value=2.7e-11 Score=110.71 Aligned_cols=84 Identities=18% Similarity=0.220 Sum_probs=74.1
Q ss_pred CCccChHHHHHHHHHHHHHHhhhc----CCCeEEEeccCCCCCCCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcE
Q 022285 16 DKILPVSAVLNAIRDLGDEAVEQC----DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGT 90 (299)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~~~----~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~ 90 (299)
++.|++.|+++.|++.+.+++.+. .+.+.|+.+|++.|||++++||...+.+.+.+++ .+.+++|++|+|||||+
T Consensus 130 ~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGr 209 (296)
T KOG1540|consen 130 ESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGR 209 (296)
T ss_pred CceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcE
Confidence 467889999999999998877443 3459999999999999999999999999988766 88999999999999999
Q ss_pred EEEEecCCC
Q 022285 91 ILIYKKLTS 99 (299)
Q Consensus 91 l~i~~~~~~ 99 (299)
|++.+....
T Consensus 210 f~cLeFskv 218 (296)
T KOG1540|consen 210 FSCLEFSKV 218 (296)
T ss_pred EEEEEcccc
Confidence 999988654
No 8
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.20 E-value=8.4e-11 Score=108.66 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=70.5
Q ss_pred ccChHHHHHHHHHHHHHHhh----hcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEE
Q 022285 18 ILPVSAVLNAIRDLGDEAVE----QCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTIL 92 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~----~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~ 92 (299)
.++..|++++|++.|+++.. ....++.++++|++++|+++++||+|++.+++|+++ +..+++|++|+|||||+|+
T Consensus 100 ~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~ 179 (261)
T PLN02233 100 KVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVS 179 (261)
T ss_pred EEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEE
Confidence 45567889999999986542 224689999999999999999999999999999987 7889999999999999999
Q ss_pred EEecCCC
Q 022285 93 IYKKLTS 99 (299)
Q Consensus 93 i~~~~~~ 99 (299)
+.++...
T Consensus 180 i~d~~~~ 186 (261)
T PLN02233 180 ILDFNKS 186 (261)
T ss_pred EEECCCC
Confidence 9987643
No 9
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.16 E-value=3.6e-11 Score=91.59 Aligned_cols=76 Identities=26% Similarity=0.381 Sum_probs=64.3
Q ss_pred CCccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEEE
Q 022285 16 DKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILI 93 (299)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i 93 (299)
+..++..|.+++|++.++++... ..+.++.++++.+|+++++||+|++..+++|++ ...+++|++|+|||||+++|
T Consensus 19 ~~~v~~~D~~~~~~~~~~~~~~~--~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 19 GASVTGIDISEEMLEQARKRLKN--EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp TCEEEEEES-HHHHHHHHHHTTT--STEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCEEEEEeCCHHHHHHHHhcccc--cCchheeehHHhCccccccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 66777889999999999876543 456699999999999999999999999999986 78999999999999999986
No 10
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.12 E-value=1.1e-09 Score=101.13 Aligned_cols=123 Identities=20% Similarity=0.222 Sum_probs=92.4
Q ss_pred ccccceEEEEecCCc---------------cChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCCCCCCceeEEEecC
Q 022285 4 GKMQSAVLALSEDKI---------------LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSIS 67 (299)
Q Consensus 4 ~~~~~~vLlL~~~~~---------------vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp~~~~sfD~Vls~~ 67 (299)
.+.|++||.|-.|+- ++..|+++.|++.|+++.... ..++.+..++++.+|+++++||+|+++.
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 345778887754433 456678899999998876543 4689999999999999999999999999
Q ss_pred ccCCCC-hHHHHHHHHHhccCCcEEEEEecCCCC-cc-chH-------------HHHHHHHHHHHHCCceeceee
Q 022285 68 SSHELP-GDQLLEEISRVLKPGGTILIYKKLTSD-KG-DVD-------------KAISALEGKLLLAGFLDAQRI 126 (299)
Q Consensus 68 ~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~-~g-~~~-------------~~~~~l~~~L~laGFv~v~~~ 126 (299)
++++.+ ...++++++|+|||||+|++.+..... .. ... ....++...|..+||..+...
T Consensus 155 v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~ 229 (272)
T PRK11873 155 VINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQ 229 (272)
T ss_pred cccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEE
Confidence 888877 678999999999999999998754221 10 000 013467778889999987543
No 11
>PLN02244 tocopherol O-methyltransferase
Probab=99.00 E-value=1.4e-09 Score=104.32 Aligned_cols=123 Identities=20% Similarity=0.242 Sum_probs=92.4
Q ss_pred cccceEEEEecC-------------CccChHHHHHHHHHHHHHHhhhc--CCCeEEEeccCCCCCCCCCceeEEEecCcc
Q 022285 5 KMQSAVLALSED-------------KILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSS 69 (299)
Q Consensus 5 ~~~~~vLlL~~~-------------~~vt~~dlse~m~~~A~~~~~~~--~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~ 69 (299)
+.+++||-|--| ..++..|+++.|++.|++++... ..++.++++|+.++||++++||+|++..++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 345667766433 45566788899999988765443 457999999999999999999999999988
Q ss_pred CCCC-hHHHHHHHHHhccCCcEEEEEecCCCCc--c--c--------hHH-----------HHHHHHHHHHHCCceecee
Q 022285 70 HELP-GDQLLEEISRVLKPGGTILIYKKLTSDK--G--D--------VDK-----------AISALEGKLLLAGFLDAQR 125 (299)
Q Consensus 70 ~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~--g--~--------~~~-----------~~~~l~~~L~laGFv~v~~ 125 (299)
+|++ ...++++++|+|||||+|+|.++..... + . +.. ...++...+..+||.++..
T Consensus 197 ~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~ 276 (340)
T PLN02244 197 EHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKT 276 (340)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEe
Confidence 8887 6789999999999999999987542110 0 0 000 1346778899999998865
Q ss_pred ec
Q 022285 126 IQ 127 (299)
Q Consensus 126 ~~ 127 (299)
..
T Consensus 277 ~d 278 (340)
T PLN02244 277 ED 278 (340)
T ss_pred ee
Confidence 53
No 12
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.96 E-value=3e-09 Score=98.46 Aligned_cols=109 Identities=15% Similarity=0.178 Sum_probs=83.4
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC---hHHHHHHHHHhccCCcEEEEE
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIY 94 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~ 94 (299)
.++..|+++.|+..|+++... ..++.+..+|+..+|+++++||+|++...++|++ ...++++++|+|||||+|++.
T Consensus 77 ~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 77 HVHGVDICEKMVNIAKLRNSD-KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred EEEEEECCHHHHHHHHHHcCc-CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 455667788999998876543 4679999999999999999999999987776664 578999999999999999999
Q ss_pred ecCCCCccchHH--------------HHHHHHHHHHHCCceeceeec
Q 022285 95 KKLTSDKGDVDK--------------AISALEGKLLLAGFLDAQRIQ 127 (299)
Q Consensus 95 ~~~~~~~g~~~~--------------~~~~l~~~L~laGFv~v~~~~ 127 (299)
++.......+.. ....+...|..+||.++....
T Consensus 156 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d 202 (263)
T PTZ00098 156 DYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAKD 202 (263)
T ss_pred EeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEEe
Confidence 875432111110 125677889999999876543
No 13
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.93 E-value=4.7e-09 Score=100.73 Aligned_cols=141 Identities=16% Similarity=0.098 Sum_probs=99.1
Q ss_pred ccceEEEEecCC--------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCC
Q 022285 6 MQSAVLALSEDK--------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE 71 (299)
Q Consensus 6 ~~~~vLlL~~~~--------------~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~ 71 (299)
.+.+||-|-.|+ .++..|+++.|++.|+++.. ..++.++.+|++++|+++++||+|++..++++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~--~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh--ccCCeEEeccHHhCCCCCCceeEEEEcChhhh
Confidence 345777775443 34456778899999887543 34788899999999999999999999988888
Q ss_pred CC-hHHHHHHHHHhccCCcEEEEEecCCCCcc--c-hH------HHHHHHHHHHHHCCceeceeecccccCccce-----
Q 022285 72 LP-GDQLLEEISRVLKPGGTILIYKKLTSDKG--D-VD------KAISALEGKLLLAGFLDAQRIQLKSVVPAEV----- 136 (299)
Q Consensus 72 ~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g--~-~~------~~~~~l~~~L~laGFv~v~~~~~kp~~~~~~----- 136 (299)
++ ...++++++|+|||||++++.+....... . .. ...+++...|..+||..++.....+....++
T Consensus 191 ~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~~~~~~~~~~ 270 (340)
T PLN02490 191 WPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKWYRGVRRHGL 270 (340)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhhccccccccc
Confidence 77 67899999999999999988754321100 0 00 0235777889999999887655443221211
Q ss_pred -eeeeeeecCCCC
Q 022285 137 -VSFGVKGKKPTW 148 (299)
Q Consensus 137 -~~~~i~a~KP~~ 148 (299)
-+..+++.||.-
T Consensus 271 ~~~~~v~~~k~~~ 283 (340)
T PLN02490 271 IMGCSVTGVKPAS 283 (340)
T ss_pred eeeEEEEEecccc
Confidence 234577777764
No 14
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.93 E-value=2.9e-09 Score=94.91 Aligned_cols=96 Identities=19% Similarity=0.285 Sum_probs=80.2
Q ss_pred CCccChHHHHHHHHHHHHHHh-hhcCCCeE-EEeccCCCCC-CCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEE
Q 022285 16 DKILPVSAVLNAIRDLGDEAV-EQCDPQII-TQASSLSQLP-VESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTI 91 (299)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~-~~~~~~i~-~~~gd~~~Lp-~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l 91 (299)
...||..|-.+.|-+.+.+++ ++...++. |+.++++++| +++.|||+|+..++++... +.+.|+|+.|+|||||++
T Consensus 99 ~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~i 178 (252)
T KOG4300|consen 99 INSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRI 178 (252)
T ss_pred CceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEE
Confidence 345677899999999998765 34567777 9999999999 9999999999999988766 788999999999999999
Q ss_pred EEEecCCCCccchHHHHHHH
Q 022285 92 LIYKKLTSDKGDVDKAISAL 111 (299)
Q Consensus 92 ~i~~~~~~~~g~~~~~~~~l 111 (299)
++.++..+..+-+...|++.
T Consensus 179 ifiEHva~~y~~~n~i~q~v 198 (252)
T KOG4300|consen 179 IFIEHVAGEYGFWNRILQQV 198 (252)
T ss_pred EEEecccccchHHHHHHHHH
Confidence 99999987666666555443
No 15
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.87 E-value=1.5e-08 Score=90.93 Aligned_cols=81 Identities=21% Similarity=0.257 Sum_probs=68.4
Q ss_pred ccChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCCCCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEEEEe
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYK 95 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~ 95 (299)
.++..|+++.|++.|+.+.... ..++.++.+|+..+|+++++||+|++.+.+++++ ...++++++|+|||||++++.+
T Consensus 72 ~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 72 HVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence 4456678889999988766443 4579999999999999999999999999888887 6789999999999999999887
Q ss_pred cCC
Q 022285 96 KLT 98 (299)
Q Consensus 96 ~~~ 98 (299)
...
T Consensus 152 ~~~ 154 (231)
T TIGR02752 152 TSQ 154 (231)
T ss_pred CCC
Confidence 654
No 16
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.81 E-value=2.8e-08 Score=98.88 Aligned_cols=108 Identities=18% Similarity=0.149 Sum_probs=85.4
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEEEEec
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKK 96 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~ 96 (299)
.++..|+++.|+..|+++......++.+..+|+..+|+++++||+|++..+++|++ +..++++++|+|||||+|++.++
T Consensus 291 ~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 291 HVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred EEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 45677899999999987765555689999999999999999999999999888887 78899999999999999999876
Q ss_pred CCCCc--c-chH----------HHHHHHHHHHHHCCceecee
Q 022285 97 LTSDK--G-DVD----------KAISALEGKLLLAGFLDAQR 125 (299)
Q Consensus 97 ~~~~~--g-~~~----------~~~~~l~~~L~laGFv~v~~ 125 (299)
..... . ... .....+...+..+||..+..
T Consensus 371 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~ 412 (475)
T PLN02336 371 CRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIA 412 (475)
T ss_pred ccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeee
Confidence 53211 0 010 11346677899999998754
No 17
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.70 E-value=2.5e-08 Score=95.13 Aligned_cols=109 Identities=13% Similarity=0.098 Sum_probs=83.5
Q ss_pred CccChHHHHHHHHHHHHHHhhhc--CCCeEEEeccCCCCCCCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEEE
Q 022285 17 KILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILI 93 (299)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~~--~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i 93 (299)
..++..|.+++|++.|+.++... ..++.+++++++++|+++++||+|++..+++|+. +..++++++|+|||||.|+|
T Consensus 154 ~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~lii 233 (322)
T PLN02396 154 ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVL 233 (322)
T ss_pred CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEE
Confidence 34567799999999998764332 3589999999999999889999999999999987 78999999999999999999
Q ss_pred EecCCCCc------------------c--chH--HHHHHHHHHHHHCCceecee
Q 022285 94 YKKLTSDK------------------G--DVD--KAISALEGKLLLAGFLDAQR 125 (299)
Q Consensus 94 ~~~~~~~~------------------g--~~~--~~~~~l~~~L~laGFv~v~~ 125 (299)
........ + .+. ...+++...|..+||..++.
T Consensus 234 st~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 234 STINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred EECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 87543210 0 000 12356777888888876543
No 18
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.69 E-value=3.4e-08 Score=90.01 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=67.4
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEEEEec
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKK 96 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~ 96 (299)
.++..|+++.|++.|+++. ....++.+|++.+|+++++||+|+++..++|++ +..++.+++|+|||||.|++..+
T Consensus 66 ~v~~~D~s~~~l~~a~~~~----~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 66 QVTALDLSPPMLAQARQKD----AADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred eEEEEECCHHHHHHHHhhC----CCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 3456688899999887653 235678999999999999999999999999987 78899999999999999999987
Q ss_pred CCCCc
Q 022285 97 LTSDK 101 (299)
Q Consensus 97 ~~~~~ 101 (299)
..++.
T Consensus 142 ~~~~~ 146 (251)
T PRK10258 142 VQGSL 146 (251)
T ss_pred CCCch
Confidence 76543
No 19
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.64 E-value=7.7e-08 Score=87.23 Aligned_cols=78 Identities=13% Similarity=0.182 Sum_probs=65.2
Q ss_pred ccChHHHHHHHHHHHHHHhhhc--CCCeEEEeccCCCCCCCCCceeEEEecCccCCCC---hHHHHHHHHHhccCCcEEE
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTIL 92 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~--~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~ 92 (299)
.++..|+++.|+..|++++... ..++.++.+|+..++++ .+|+|++.+++||++ ...++++++|+|||||.|+
T Consensus 81 ~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~ 158 (239)
T TIGR00740 81 KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLV 158 (239)
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 4556788899999998876543 35789999999999875 489999999999987 3679999999999999999
Q ss_pred EEecC
Q 022285 93 IYKKL 97 (299)
Q Consensus 93 i~~~~ 97 (299)
+.++.
T Consensus 159 i~d~~ 163 (239)
T TIGR00740 159 LSEKF 163 (239)
T ss_pred Eeecc
Confidence 99764
No 20
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.56 E-value=7.8e-08 Score=88.17 Aligned_cols=81 Identities=12% Similarity=0.144 Sum_probs=67.9
Q ss_pred CccChHHHHHHHHHHHHHHhhhc--CCCeEEEeccCCCCC-CCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEE
Q 022285 17 KILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLP-VESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTIL 92 (299)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~~--~~~i~~~~gd~~~Lp-~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~ 92 (299)
..++..|+++.|++.|+++.... ..++.++++++..++ +.+++||+|++..+++|+. +..++.+++|+|||||.|+
T Consensus 67 ~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~ 146 (255)
T PRK11036 67 HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALS 146 (255)
T ss_pred CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEE
Confidence 45667899999999998876543 467899999998774 6678999999999999886 7889999999999999998
Q ss_pred EEecC
Q 022285 93 IYKKL 97 (299)
Q Consensus 93 i~~~~ 97 (299)
+..+.
T Consensus 147 i~~~n 151 (255)
T PRK11036 147 LMFYN 151 (255)
T ss_pred EEEEC
Confidence 76543
No 21
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.54 E-value=1.3e-07 Score=79.73 Aligned_cols=81 Identities=21% Similarity=0.359 Sum_probs=70.4
Q ss_pred CCccChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCC--CCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEE
Q 022285 16 DKILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP--VESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTI 91 (299)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp--~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l 91 (299)
+..++..|++++|++.|+++++.. ..++++.++|+.+++ ++ +.||+|++..+++++. ...+++++.|+|++||.+
T Consensus 28 ~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~ 106 (152)
T PF13847_consen 28 GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGIL 106 (152)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEE
T ss_pred CCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEE
Confidence 455667789999999999876554 458999999999988 66 8999999999999988 678999999999999999
Q ss_pred EEEecC
Q 022285 92 LIYKKL 97 (299)
Q Consensus 92 ~i~~~~ 97 (299)
++.+..
T Consensus 107 i~~~~~ 112 (152)
T PF13847_consen 107 IISDPN 112 (152)
T ss_dssp EEEEEE
T ss_pred EEEECC
Confidence 998875
No 22
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.53 E-value=4.3e-07 Score=86.62 Aligned_cols=108 Identities=19% Similarity=0.194 Sum_probs=78.7
Q ss_pred cChHHHHHHHHHHHHHHhhh--cCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEEEEe
Q 022285 19 LPVSAVLNAIRDLGDEAVEQ--CDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYK 95 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~--~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~ 95 (299)
|+..|.+..|+.+++..... ...++.++.++++.+|+ +++||+|++..+++|.. +..++++++|+|+|||.|++..
T Consensus 148 V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 148 VVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 55667777787765432211 24589999999999998 88999999998888876 7889999999999999998875
Q ss_pred cCC-CCcc----c---hH--------HHHHHHHHHHHHCCceeceeec
Q 022285 96 KLT-SDKG----D---VD--------KAISALEGKLLLAGFLDAQRIQ 127 (299)
Q Consensus 96 ~~~-~~~g----~---~~--------~~~~~l~~~L~laGFv~v~~~~ 127 (299)
..- +... + +. .....+...|..+||.++....
T Consensus 227 ~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 227 LVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred EEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEe
Confidence 321 1100 0 00 1235778899999999887654
No 23
>PRK08317 hypothetical protein; Provisional
Probab=98.53 E-value=4.1e-07 Score=80.66 Aligned_cols=107 Identities=23% Similarity=0.253 Sum_probs=79.6
Q ss_pred cChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEEEEecC
Q 022285 19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKL 97 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~ 97 (299)
++..|+++.++..++++......++.+..+|+..+|+++.+||+|++...++++. +..++++++++|||||.+++.+..
T Consensus 47 v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 47 VVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred EEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 4455666777888876543446789999999999999999999999999888876 788999999999999999988753
Q ss_pred CCC------ccc-hH---H----------HHHHHHHHHHHCCceecee
Q 022285 98 TSD------KGD-VD---K----------AISALEGKLLLAGFLDAQR 125 (299)
Q Consensus 98 ~~~------~g~-~~---~----------~~~~l~~~L~laGFv~v~~ 125 (299)
... ... .. . ....+...|..+||.++..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 174 (241)
T PRK08317 127 WDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREAGLTDIEV 174 (241)
T ss_pred CCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcCCCceeE
Confidence 111 000 00 0 1235667899999987754
No 24
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.52 E-value=1e-06 Score=78.54 Aligned_cols=80 Identities=24% Similarity=0.302 Sum_probs=65.6
Q ss_pred ccChHHHHHHHHHHHHHHhhh--cCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEEEE
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQ--CDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIY 94 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~--~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~ 94 (299)
.++..|+++.|+..++++... ...++.+..+|+..++++.++||+|++.+.+|+++ ...++.++.++|+|||.+++.
T Consensus 78 ~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 78 EVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred eEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEE
Confidence 344566677888888876543 34678999999999988888999999988888877 788999999999999999887
Q ss_pred ecC
Q 022285 95 KKL 97 (299)
Q Consensus 95 ~~~ 97 (299)
+..
T Consensus 158 ~~~ 160 (239)
T PRK00216 158 EFS 160 (239)
T ss_pred Eec
Confidence 653
No 25
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.51 E-value=4e-07 Score=83.28 Aligned_cols=78 Identities=15% Similarity=0.236 Sum_probs=65.3
Q ss_pred ccChHHHHHHHHHHHHHHhhhc--CCCeEEEeccCCCCCCCCCceeEEEecCccCCCC---hHHHHHHHHHhccCCcEEE
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTIL 92 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~--~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~ 92 (299)
.++..|.++.|++.|++++... ..++.++++++..+|++ .||+|++++++|+++ ...++++++|+|||||.|+
T Consensus 84 ~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~ 161 (247)
T PRK15451 84 KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALV 161 (247)
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 4556788999999999877543 34799999999998875 489999999999887 2579999999999999999
Q ss_pred EEecC
Q 022285 93 IYKKL 97 (299)
Q Consensus 93 i~~~~ 97 (299)
+.+..
T Consensus 162 l~e~~ 166 (247)
T PRK15451 162 LSEKF 166 (247)
T ss_pred EEEec
Confidence 98754
No 26
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.47 E-value=5.9e-07 Score=79.85 Aligned_cols=78 Identities=21% Similarity=0.230 Sum_probs=66.4
Q ss_pred cChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEEEEecC
Q 022285 19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKL 97 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~ 97 (299)
++..|+++.|+..++++.. +++.++.+|+..+|+++++||+|++...+||+. +..++.++.++|||||.|++..+.
T Consensus 61 ~~~~D~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~ 137 (240)
T TIGR02072 61 FIALDISAGMLAQAKTKLS---ENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFG 137 (240)
T ss_pred EEEEeChHHHHHHHHHhcC---CCCeEEecchhhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 3566778888888776543 478899999999999999999999999999986 788999999999999999998876
Q ss_pred CC
Q 022285 98 TS 99 (299)
Q Consensus 98 ~~ 99 (299)
..
T Consensus 138 ~~ 139 (240)
T TIGR02072 138 PG 139 (240)
T ss_pred cc
Confidence 54
No 27
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.45 E-value=5.2e-07 Score=80.54 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=81.7
Q ss_pred CccChHHHHHHHHHHHHHHhhh--cCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEEE
Q 022285 17 KILPVSAVLNAIRDLGDEAVEQ--CDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILI 93 (299)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~--~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i 93 (299)
..++..|+++.|...++.++.. ...++.+..+|+...|++ ++||+|++...++++. ...++++++++|||||++++
T Consensus 24 ~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 24 LQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEE
Confidence 3455667788999988877644 356789999998777775 4899999998888877 67899999999999999999
Q ss_pred EecCCCCccc--------hHHHHHHHHHHHHHCCceeceeec
Q 022285 94 YKKLTSDKGD--------VDKAISALEGKLLLAGFLDAQRIQ 127 (299)
Q Consensus 94 ~~~~~~~~g~--------~~~~~~~l~~~L~laGFv~v~~~~ 127 (299)
.+........ .......+...+..+||..+....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 103 ADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred EEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 8764211000 011234677888999999876543
No 28
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.44 E-value=1.2e-07 Score=74.57 Aligned_cols=73 Identities=23% Similarity=0.352 Sum_probs=62.0
Q ss_pred CccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEec-CccCCCC---hHHHHHHHHHhccCCc
Q 022285 17 KILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI-SSSHELP---GDQLLEEISRVLKPGG 89 (299)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~-~~~~~~~---~~~~L~ei~RvLKPGG 89 (299)
..++..|++++|++.++++......++.+.++|+.++++.+++||+|++. .++++++ ...++++++++|||||
T Consensus 25 ~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 25 SRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 56678899999999999877666669999999999999999999999995 4477777 4789999999999998
No 29
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.42 E-value=2.3e-06 Score=75.50 Aligned_cols=79 Identities=23% Similarity=0.264 Sum_probs=64.5
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEEEEec
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKK 96 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~ 96 (299)
.++..|+++.++..++.+.. ...++.+..+++..++++.+.||+|++.+.+++.+ ...+++++.++|+|||++++.+.
T Consensus 66 ~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 66 KVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred eEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 34455667778777776543 44578899999999998888999999998888877 78899999999999999998765
Q ss_pred C
Q 022285 97 L 97 (299)
Q Consensus 97 ~ 97 (299)
.
T Consensus 145 ~ 145 (223)
T TIGR01934 145 S 145 (223)
T ss_pred c
Confidence 3
No 30
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.39 E-value=3.2e-07 Score=84.00 Aligned_cols=73 Identities=15% Similarity=0.151 Sum_probs=61.2
Q ss_pred CccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEEEEe
Q 022285 17 KILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYK 95 (299)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~ 95 (299)
..++..|+++.|++.|+++ ++.++.+|++.++ ++++||+|++...+||++ +..++++++|+|||||.|++..
T Consensus 54 ~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 54 AVIEALDSSPEMVAAARER------GVDARTGDVRDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred CEEEEEECCHHHHHHHHhc------CCcEEEcChhhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 3456678888898888642 5788999998885 568999999999999998 6889999999999999999875
Q ss_pred c
Q 022285 96 K 96 (299)
Q Consensus 96 ~ 96 (299)
+
T Consensus 127 ~ 127 (255)
T PRK14103 127 P 127 (255)
T ss_pred C
Confidence 4
No 31
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.34 E-value=1.5e-06 Score=82.65 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=78.0
Q ss_pred ccChHHHHHHHHHHHHHH--hhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEEEE
Q 022285 18 ILPVSAVLNAIRDLGDEA--VEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIY 94 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~--~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~ 94 (299)
.++..|.++.|+.+++.. ......++.+...+++++|.. .+||+|++..+++|.+ +..++.+++|+|||||.|++.
T Consensus 146 ~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 146 SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEE
Confidence 356678888888775431 112245788888999999864 4899999999888887 778999999999999999987
Q ss_pred ecC-CCCc-------cchH--------HHHHHHHHHHHHCCceeceeec
Q 022285 95 KKL-TSDK-------GDVD--------KAISALEGKLLLAGFLDAQRIQ 127 (299)
Q Consensus 95 ~~~-~~~~-------g~~~--------~~~~~l~~~L~laGFv~v~~~~ 127 (299)
... .+.. +... .....+...|..+||.+++...
T Consensus 225 tl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~ 273 (314)
T TIGR00452 225 TLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILD 273 (314)
T ss_pred EEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEe
Confidence 542 1110 0011 0235677889999999987543
No 32
>PRK05785 hypothetical protein; Provisional
Probab=98.33 E-value=1.5e-06 Score=78.75 Aligned_cols=64 Identities=19% Similarity=0.174 Sum_probs=54.8
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC-hHHHHHHHHHhccCC
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPG 88 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPG 88 (299)
.++..|++++|++.|+++. .+++++++++||++++||+|++.+++||++ ++.+++|++|+|||.
T Consensus 76 ~v~gvD~S~~Ml~~a~~~~-------~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 76 YVVALDYAENMLKMNLVAD-------DKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred EEEEECCCHHHHHHHHhcc-------ceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 4556788899999987531 357899999999999999999999999887 788999999999994
No 33
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.32 E-value=1.1e-06 Score=77.77 Aligned_cols=79 Identities=19% Similarity=0.064 Sum_probs=64.0
Q ss_pred CCccChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCCCCCCceeEEEecCccCCCC---hHHHHHHHHHhccCCcEE
Q 022285 16 DKILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTI 91 (299)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l 91 (299)
+..++..|+++.|++.+++++... ..++.+..+|+..++++ .+||+|++..++|+++ ...++++++|+|||||.+
T Consensus 52 g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~ 130 (197)
T PRK11207 52 GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYN 130 (197)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEE
Confidence 456677799999999998765443 35688899999888875 5799999999888876 468999999999999997
Q ss_pred EEEe
Q 022285 92 LIYK 95 (299)
Q Consensus 92 ~i~~ 95 (299)
++..
T Consensus 131 ~~~~ 134 (197)
T PRK11207 131 LIVA 134 (197)
T ss_pred EEEE
Confidence 6543
No 34
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.31 E-value=4.7e-06 Score=73.68 Aligned_cols=98 Identities=15% Similarity=0.082 Sum_probs=74.1
Q ss_pred CCccChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCCCCCCceeEEEecCccCCCChHHHHHHHHHhccCCcEEEEE
Q 022285 16 DKILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIY 94 (299)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~ 94 (299)
+..++..|.++.|++.|+++++.. ..+++++.+++..++. .++||+|++... .+...+++++++.|||||+|++.
T Consensus 69 ~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~---~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 69 ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV---ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc---cCHHHHHHHHHHhcCCCeEEEEE
Confidence 445667799999999999877654 3469999999999887 779999998752 23578999999999999999988
Q ss_pred ecCCCCccchHHHHHHHHHHHHHCCceecee
Q 022285 95 KKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (299)
Q Consensus 95 ~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~ 125 (299)
.... .. ..+......+|..-...
T Consensus 145 ~~~~-----~~---~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 145 KGRD-----PE---EEIAELPKALGGKVEEV 167 (187)
T ss_pred eCCC-----hH---HHHHHHHHhcCceEeee
Confidence 6432 11 24555667778875443
No 35
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.30 E-value=1.2e-06 Score=77.35 Aligned_cols=80 Identities=14% Similarity=0.042 Sum_probs=63.8
Q ss_pred CCccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC---hHHHHHHHHHhccCCcEEE
Q 022285 16 DKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTIL 92 (299)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~ 92 (299)
+..|+..|+++.|++.+++++...+..+.+..+++...+++ ++||+|++...+|+++ ...++++++|+|||||+++
T Consensus 52 g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 52 GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 55677889999999998876654444577788888777764 5799999999888876 3679999999999999976
Q ss_pred EEec
Q 022285 93 IYKK 96 (299)
Q Consensus 93 i~~~ 96 (299)
+.+.
T Consensus 131 i~~~ 134 (195)
T TIGR00477 131 IVAA 134 (195)
T ss_pred EEEe
Confidence 6654
No 36
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.27 E-value=4.9e-07 Score=82.45 Aligned_cols=83 Identities=12% Similarity=0.192 Sum_probs=73.2
Q ss_pred CCccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEEEE
Q 022285 16 DKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIY 94 (299)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~ 94 (299)
|+.||..|+++.++..|+..+......+.+.+..++.+-...++||+|++.-+++|++ ++.++..+.+.+||||.+++.
T Consensus 81 Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 81 GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEe
Confidence 6788999999999999997766656678899998888876668999999999999998 888999999999999999998
Q ss_pred ecCC
Q 022285 95 KKLT 98 (299)
Q Consensus 95 ~~~~ 98 (299)
....
T Consensus 161 Tinr 164 (243)
T COG2227 161 TINR 164 (243)
T ss_pred cccc
Confidence 8753
No 37
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.26 E-value=1.6e-06 Score=68.57 Aligned_cols=80 Identities=20% Similarity=0.239 Sum_probs=61.7
Q ss_pred cCCccChHHHHHHHHHHHHHHhh--hcCCCeEEEeccC-CCCCCCCCceeEEEecC-ccCCCC----hHHHHHHHHHhcc
Q 022285 15 EDKILPVSAVLNAIRDLGDEAVE--QCDPQIITQASSL-SQLPVESFSIDTVLSIS-SSHELP----GDQLLEEISRVLK 86 (299)
Q Consensus 15 ~~~~vt~~dlse~m~~~A~~~~~--~~~~~i~~~~gd~-~~Lp~~~~sfD~Vls~~-~~~~~~----~~~~L~ei~RvLK 86 (299)
.+..++..|.++.|++.|++++. ....++.++.+|+ ....+ ...||+|++.. .++++. ...+++++++.|+
T Consensus 24 ~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 102 (112)
T PF12847_consen 24 PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLK 102 (112)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCCccccccchhHHHHHHHHHHHhcC
Confidence 34555666888999999998873 3468999999999 33333 44699999988 555333 3678999999999
Q ss_pred CCcEEEEEe
Q 022285 87 PGGTILIYK 95 (299)
Q Consensus 87 PGG~l~i~~ 95 (299)
|||+|+|.+
T Consensus 103 pgG~lvi~~ 111 (112)
T PF12847_consen 103 PGGRLVINT 111 (112)
T ss_dssp EEEEEEEEE
T ss_pred CCcEEEEEE
Confidence 999999875
No 38
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.25 E-value=8.1e-07 Score=82.40 Aligned_cols=80 Identities=11% Similarity=0.106 Sum_probs=66.3
Q ss_pred CccChHHHHHHHHHHHHHHhhh----------------------------cCCCeEEEeccCCCCCCCCCceeEEEecCc
Q 022285 17 KILPVSAVLNAIRDLGDEAVEQ----------------------------CDPQIITQASSLSQLPVESFSIDTVLSISS 68 (299)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~----------------------------~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~ 68 (299)
..++..|+++.|++.|++++-. .-.++.|.++|+.+.+++.++||+|++.++
T Consensus 133 ~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnv 212 (264)
T smart00138 133 VKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNV 212 (264)
T ss_pred eEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechh
Confidence 4566789999999999875310 113789999999999888899999999999
Q ss_pred cCCCC---hHHHHHHHHHhccCCcEEEEEec
Q 022285 69 SHELP---GDQLLEEISRVLKPGGTILIYKK 96 (299)
Q Consensus 69 ~~~~~---~~~~L~ei~RvLKPGG~l~i~~~ 96 (299)
+++++ ...++++++++|+|||.|++...
T Consensus 213 l~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 213 LIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred HHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 99987 24799999999999999998643
No 39
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.24 E-value=3.6e-06 Score=74.82 Aligned_cols=100 Identities=15% Similarity=0.004 Sum_probs=75.2
Q ss_pred CccChHHHHHHHHHHHHHHhhhc-CCCeEEEeccC-CCCC--CCCCceeEEEecCccCCCC---------hHHHHHHHHH
Q 022285 17 KILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSL-SQLP--VESFSIDTVLSISSSHELP---------GDQLLEEISR 83 (299)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~-~~Lp--~~~~sfD~Vls~~~~~~~~---------~~~~L~ei~R 83 (299)
..++..|.++.|++.|+++.... ..++.++++|+ +.++ +++++||+|++++...|.. ...+++++++
T Consensus 65 ~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~ 144 (202)
T PRK00121 65 INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYAR 144 (202)
T ss_pred ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHH
Confidence 34567788899999998766443 36899999999 7777 7888999999987654432 3578999999
Q ss_pred hccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCceec
Q 022285 84 VLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA 123 (299)
Q Consensus 84 vLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v 123 (299)
+|||||.|++..... .....+...+..+||...
T Consensus 145 ~LkpgG~l~i~~~~~-------~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 145 KLKPGGEIHFATDWE-------GYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred HcCCCCEEEEEcCCH-------HHHHHHHHHHHhCccccc
Confidence 999999999876431 223356677888888643
No 40
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.24 E-value=1.7e-06 Score=72.22 Aligned_cols=82 Identities=26% Similarity=0.338 Sum_probs=60.6
Q ss_pred eEEEeccCCCCCCCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEEEEecCCCC----------ccchH------
Q 022285 43 IITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKLTSD----------KGDVD------ 105 (299)
Q Consensus 43 i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~----------~g~~~------ 105 (299)
+.....+....++++++||+|+++.+++|++ +..++++++++|||||.+++.++.... .....
T Consensus 62 ~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (161)
T PF13489_consen 62 VVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHF 141 (161)
T ss_dssp SEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEE
T ss_pred hhhhhhhhhhhhccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceecc
Confidence 3444444445567789999999999999998 789999999999999999999886421 00110
Q ss_pred HHHHHHHHHHHHCCceece
Q 022285 106 KAISALEGKLLLAGFLDAQ 124 (299)
Q Consensus 106 ~~~~~l~~~L~laGFv~v~ 124 (299)
....++...+..+||..++
T Consensus 142 ~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 142 FSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp BBHHHHHHHHHHTTEEEEE
T ss_pred CCHHHHHHHHHHCCCEEEE
Confidence 0135777888888888764
No 41
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.19 E-value=1.2e-05 Score=75.69 Aligned_cols=76 Identities=14% Similarity=0.145 Sum_probs=57.9
Q ss_pred cChHHHHHHHHHHHHHHhhhc--CCCeEEEeccCCCCCCCCCceeEEEecCccCCCCh---HHHHHHHHHhccCCcEEEE
Q 022285 19 LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILI 93 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~--~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l~i 93 (299)
+++.|+ +.+++.+++++... ..+++++.+|+...+++. +|+|+....+|+++. ..++++++++|||||+|+|
T Consensus 176 ~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i 252 (306)
T TIGR02716 176 STILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLI 252 (306)
T ss_pred EEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEE
Confidence 334454 56777777665543 457999999998766654 699988888887663 4689999999999999999
Q ss_pred EecC
Q 022285 94 YKKL 97 (299)
Q Consensus 94 ~~~~ 97 (299)
.+..
T Consensus 253 ~d~~ 256 (306)
T TIGR02716 253 LDMV 256 (306)
T ss_pred EEec
Confidence 9863
No 42
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.18 E-value=2.7e-06 Score=77.66 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=62.2
Q ss_pred CccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEEEEe
Q 022285 17 KILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYK 95 (299)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~ 95 (299)
..++..|+++.|++.|+++. .++.++.+|+..++ +..+||+|+++..+||++ ...++++++|+|||||.|++..
T Consensus 56 ~~v~gvD~s~~~i~~a~~~~----~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 56 ARITGIDSSPAMLAEARSRL----PDCQFVEADIASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred CEEEEEECCHHHHHHHHHhC----CCCeEEECchhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 34556688899999887653 56889999998775 456999999999999987 6789999999999999998864
Q ss_pred c
Q 022285 96 K 96 (299)
Q Consensus 96 ~ 96 (299)
+
T Consensus 131 ~ 131 (258)
T PRK01683 131 P 131 (258)
T ss_pred C
Confidence 3
No 43
>PRK06922 hypothetical protein; Provisional
Probab=98.18 E-value=2.2e-06 Score=88.20 Aligned_cols=80 Identities=24% Similarity=0.204 Sum_probs=65.3
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCC--CCCCceeEEEecCccCCCC--------------hHHHHHHH
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSISSSHELP--------------GDQLLEEI 81 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp--~~~~sfD~Vls~~~~~~~~--------------~~~~L~ei 81 (299)
.++..|+++.|++.|+++......++.++++|+.++| +++++||+|++++.+|++. ...+++++
T Consensus 444 kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI 523 (677)
T PRK06922 444 RIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSA 523 (677)
T ss_pred EEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHH
Confidence 4445678889999998765444567888999999988 8899999999998877541 36799999
Q ss_pred HHhccCCcEEEEEecC
Q 022285 82 SRVLKPGGTILIYKKL 97 (299)
Q Consensus 82 ~RvLKPGG~l~i~~~~ 97 (299)
+|+|||||.+++.+..
T Consensus 524 ~RVLKPGGrLII~D~v 539 (677)
T PRK06922 524 YEVLKPGGRIIIRDGI 539 (677)
T ss_pred HHHcCCCcEEEEEeCc
Confidence 9999999999998753
No 44
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.16 E-value=4.5e-06 Score=75.99 Aligned_cols=83 Identities=19% Similarity=0.306 Sum_probs=60.6
Q ss_pred CeEEEeccCCCC--CCCCCceeEEEecCc---c-CCCChHHHHHHHHHhccCCcEEEEEecCCCCc--cchHHHHHHHHH
Q 022285 42 QIITQASSLSQL--PVESFSIDTVLSISS---S-HELPGDQLLEEISRVLKPGGTILIYKKLTSDK--GDVDKAISALEG 113 (299)
Q Consensus 42 ~i~~~~gd~~~L--p~~~~sfD~Vls~~~---~-~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~--g~~~~~~~~l~~ 113 (299)
.+..+.||+.++ .|+|++||+|+.--. . .++..+.++.|++|+|||||+++.....++.. |. .....+.+
T Consensus 186 ~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~--d~~~gVa~ 263 (287)
T COG2521 186 AIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGL--DLPKGVAE 263 (287)
T ss_pred ccEEecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccC--ChhHHHHH
Confidence 567788887766 688999999987542 1 13336889999999999999999887654421 11 11236778
Q ss_pred HHHHCCceeceee
Q 022285 114 KLLLAGFLDAQRI 126 (299)
Q Consensus 114 ~L~laGFv~v~~~ 126 (299)
.|..+||..+...
T Consensus 264 RLr~vGF~~v~~~ 276 (287)
T COG2521 264 RLRRVGFEVVKKV 276 (287)
T ss_pred HHHhcCceeeeee
Confidence 9999999987654
No 45
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.15 E-value=1.5e-05 Score=68.99 Aligned_cols=99 Identities=16% Similarity=0.088 Sum_probs=73.5
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC----------------------hH
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP----------------------GD 75 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~----------------------~~ 75 (299)
.++..|+++.|++.+++++.....++.+..+|+...+ ..+||+|+++..+++.+ ..
T Consensus 43 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (179)
T TIGR00537 43 CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVID 120 (179)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHH
Confidence 4667789999999998876554457888889887654 45899999987665432 14
Q ss_pred HHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCceecee
Q 022285 76 QLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (299)
Q Consensus 76 ~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~ 125 (299)
.++.+++|+|||||++++....... ...+...|...||.....
T Consensus 121 ~~l~~~~~~Lk~gG~~~~~~~~~~~-------~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 121 RFLDELPEILKEGGRVQLIQSSLNG-------EPDTFDKLDERGFRYEIV 163 (179)
T ss_pred HHHHhHHHhhCCCCEEEEEEeccCC-------hHHHHHHHHhCCCeEEEE
Confidence 5799999999999999988764321 125567788899976543
No 46
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.14 E-value=3e-06 Score=78.52 Aligned_cols=71 Identities=25% Similarity=0.362 Sum_probs=58.4
Q ss_pred cChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCChHHHHHHHHHhccCCcEEEEEecCC
Q 022285 19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLT 98 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~ 98 (299)
++..|++..|+..|+++ .+++.+.++|+.++|+++++||+|++.+. + ..+.|++|+|||||.|++..+..
T Consensus 115 v~giD~s~~~l~~A~~~----~~~~~~~~~d~~~lp~~~~sfD~I~~~~~----~--~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 115 LFGLDISKVAIKYAAKR----YPQVTFCVASSHRLPFADQSLDAIIRIYA----P--CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred EEEECCCHHHHHHHHHh----CCCCeEEEeecccCCCcCCceeEEEEecC----C--CCHHHHHhhccCCCEEEEEeCCC
Confidence 45678888999888653 46789999999999999999999998764 1 34689999999999999987754
Q ss_pred C
Q 022285 99 S 99 (299)
Q Consensus 99 ~ 99 (299)
.
T Consensus 185 ~ 185 (272)
T PRK11088 185 R 185 (272)
T ss_pred c
Confidence 3
No 47
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.12 E-value=2e-05 Score=70.80 Aligned_cols=119 Identities=15% Similarity=0.130 Sum_probs=82.4
Q ss_pred cceEEEEecCC------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCC-CCCCceeEEEecCccCCCC
Q 022285 7 QSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP-VESFSIDTVLSISSSHELP 73 (299)
Q Consensus 7 ~~~vLlL~~~~------------~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp-~~~~sfD~Vls~~~~~~~~ 73 (299)
+.+||-|-.++ .++..|+++.++..++++.......+.+...++..++ .....||+|++...+++.+
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~ 128 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVP 128 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhccC
Confidence 45677775443 3445677788888887765544446778888887765 3457899999988888776
Q ss_pred -hHHHHHHHHHhccCCcEEEEEecCCCCcc--------------------chH--HHHHHHHHHHHHCCceecee
Q 022285 74 -GDQLLEEISRVLKPGGTILIYKKLTSDKG--------------------DVD--KAISALEGKLLLAGFLDAQR 125 (299)
Q Consensus 74 -~~~~L~ei~RvLKPGG~l~i~~~~~~~~g--------------------~~~--~~~~~l~~~L~laGFv~v~~ 125 (299)
+..++..+.++|+|||.+++..+...... ... ....++...+..+||..++.
T Consensus 129 ~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~ 203 (233)
T PRK05134 129 DPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDI 203 (233)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeee
Confidence 67899999999999999998865321100 000 01245777888889887654
No 48
>PRK04266 fibrillarin; Provisional
Probab=98.12 E-value=3.1e-05 Score=70.46 Aligned_cols=119 Identities=18% Similarity=0.120 Sum_probs=76.2
Q ss_pred cccceEEEEecCCc--------------cChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCC----CCCCCCceeEEEec
Q 022285 5 KMQSAVLALSEDKI--------------LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ----LPVESFSIDTVLSI 66 (299)
Q Consensus 5 ~~~~~vLlL~~~~~--------------vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~----Lp~~~~sfD~Vls~ 66 (299)
+.|++||-+-.++- |...|+++.|++...+++.. ..++.++.+|+.. .++. ++||+|++.
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d 148 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-RKNIIPILADARKPERYAHVV-EKVDVIYQD 148 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-cCCcEEEECCCCCcchhhhcc-ccCCEEEEC
Confidence 35667777755542 33346677787766655433 3678999998864 2233 469999965
Q ss_pred CccCCCChHHHHHHHHHhccCCcEEEEE------ecCCCCccchHHHHHHHHHHHHHCCceeceeecccc
Q 022285 67 SSSHELPGDQLLEEISRVLKPGGTILIY------KKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKS 130 (299)
Q Consensus 67 ~~~~~~~~~~~L~ei~RvLKPGG~l~i~------~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~~~kp 130 (299)
....| ....++++++|+|||||+|+|. ++... ...........+..+||..++.....|
T Consensus 149 ~~~p~-~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~----~~~~~~~~~~~l~~aGF~~i~~~~l~p 213 (226)
T PRK04266 149 VAQPN-QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKD----PKEIFKEEIRKLEEGGFEILEVVDLEP 213 (226)
T ss_pred CCChh-HHHHHHHHHHHhcCCCcEEEEEEecccccCcCC----HHHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 43211 1245689999999999999994 32211 112234556889999999887665444
No 49
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.11 E-value=4.4e-06 Score=75.01 Aligned_cols=80 Identities=23% Similarity=0.244 Sum_probs=56.8
Q ss_pred CeEEEeccCCCCCCCCCceeEEEecCccCCCChHHHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCce
Q 022285 42 QIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL 121 (299)
Q Consensus 42 ~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv 121 (299)
+-.+.++|+.++|++++++|+++...+++..+-..++.|.+|+|||||.|.|.|....- . ..+.+...+...||.
T Consensus 105 n~~Vtacdia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf-~----~~~~F~~~~~~~GF~ 179 (219)
T PF05148_consen 105 NPRVTACDIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRF-E----NVKQFIKALKKLGFK 179 (219)
T ss_dssp STTEEES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG--S-----HHHHHHHHHCTTEE
T ss_pred CCCEEEecCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccC-c----CHHHHHHHHHHCCCe
Confidence 33456789999999999999999999898888778999999999999999999986431 1 224677888899999
Q ss_pred eceee
Q 022285 122 DAQRI 126 (299)
Q Consensus 122 ~v~~~ 126 (299)
.....
T Consensus 180 ~~~~d 184 (219)
T PF05148_consen 180 LKSKD 184 (219)
T ss_dssp EEEEE
T ss_pred EEecc
Confidence 77543
No 50
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.11 E-value=1.1e-05 Score=71.06 Aligned_cols=101 Identities=15% Similarity=0.080 Sum_probs=71.9
Q ss_pred CccChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCC---CCCCceeEEEecCccCCCC---------hHHHHHHHHH
Q 022285 17 KILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP---VESFSIDTVLSISSSHELP---------GDQLLEEISR 83 (299)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp---~~~~sfD~Vls~~~~~~~~---------~~~~L~ei~R 83 (299)
..++..|++..|+..|++++... ..++.++.+|+..++ +++++||.|++++...|.. ...++++++|
T Consensus 41 ~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r 120 (194)
T TIGR00091 41 KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYAN 120 (194)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHH
Confidence 34556788889999988766543 468999999998654 5677999999988655532 2578999999
Q ss_pred hccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCC-ceece
Q 022285 84 VLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAG-FLDAQ 124 (299)
Q Consensus 84 vLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laG-Fv~v~ 124 (299)
+|||||.|++..... .....+...+...| |..+.
T Consensus 121 ~LkpgG~l~~~td~~-------~~~~~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 121 VLKKGGVIHFKTDNE-------PLFEDMLKVLSENDLFENTS 155 (194)
T ss_pred HhCCCCEEEEEeCCH-------HHHHHHHHHHHhCCCeEecc
Confidence 999999998876431 11223444555555 77654
No 51
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.08 E-value=7.9e-06 Score=75.41 Aligned_cols=79 Identities=22% Similarity=0.293 Sum_probs=64.5
Q ss_pred CeEEEeccCCCCCCCCCceeEEEecCccCCCChHHHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCce
Q 022285 42 QIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL 121 (299)
Q Consensus 42 ~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv 121 (299)
+-.+...|+.++|++++|.|++++..+++..+...++.|++|+|||||.++|.+.... +. ....+.+.|...||-
T Consensus 211 ~~~V~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SR----f~-dv~~f~r~l~~lGF~ 285 (325)
T KOG3045|consen 211 NERVIACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSR----FS-DVKGFVRALTKLGFD 285 (325)
T ss_pred CCceeeccccCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhh----cc-cHHHHHHHHHHcCCe
Confidence 4445678999999999999999999888888878899999999999999999987542 11 123577899999998
Q ss_pred ecee
Q 022285 122 DAQR 125 (299)
Q Consensus 122 ~v~~ 125 (299)
..+.
T Consensus 286 ~~~~ 289 (325)
T KOG3045|consen 286 VKHK 289 (325)
T ss_pred eeeh
Confidence 6543
No 52
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.07 E-value=1.9e-05 Score=69.22 Aligned_cols=99 Identities=17% Similarity=0.090 Sum_probs=71.7
Q ss_pred ccChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCCCCCCceeEEEecCccCCCChHHHHHHHHHhccCCcEEEEEec
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK 96 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~ 96 (299)
.++..|.++.|++.+++++++. ..++.++.+|++.++ ..++||+|++.. +++ ...+++.++++|+|||.+++...
T Consensus 68 ~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~~--~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 68 KLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LAS--LNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hhC--HHHHHHHHHHhcCCCCEEEEEcC
Confidence 4667788999999888766544 357999999999875 367999999875 332 45688899999999999998753
Q ss_pred CCCCccchHHHHHHHHHHHHHCCceecee
Q 022285 97 LTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (299)
Q Consensus 97 ~~~~~g~~~~~~~~l~~~L~laGFv~v~~ 125 (299)
.. ....+..+...+...||..++.
T Consensus 144 ~~-----~~~~~~~~~e~~~~~~~~~~~~ 167 (181)
T TIGR00138 144 KK-----YLDEIEEAKRKCQVLGVEPLEV 167 (181)
T ss_pred CC-----cHHHHHHHHHhhhhcCceEeec
Confidence 22 1122234456677789987653
No 53
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.07 E-value=7.2e-06 Score=76.70 Aligned_cols=79 Identities=16% Similarity=0.098 Sum_probs=64.6
Q ss_pred CCccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC---hHHHHHHHHHhccCCcEEE
Q 022285 16 DKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTIL 92 (299)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~ 92 (299)
+..|+..|.++.|++.+++++.....++.+...|+...++ +++||+|++..++|+++ ...++++++|+|+|||.++
T Consensus 142 g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 142 GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 4556677899999999887766555578888888887766 67899999999888876 3679999999999999977
Q ss_pred EEe
Q 022285 93 IYK 95 (299)
Q Consensus 93 i~~ 95 (299)
+..
T Consensus 221 ~v~ 223 (287)
T PRK12335 221 IVC 223 (287)
T ss_pred EEE
Confidence 654
No 54
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.07 E-value=5.1e-07 Score=70.33 Aligned_cols=76 Identities=21% Similarity=0.252 Sum_probs=44.8
Q ss_pred CCccChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCC--CCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEE
Q 022285 16 DKILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP--VESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTI 91 (299)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp--~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l 91 (299)
...++..|+++.|++.|+++.... ..+............ ...++||+|++..++||++ ...+++.++++|||||.|
T Consensus 20 ~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 20 DARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred CCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 445567788888988877766553 334444443333322 1225999999999999997 789999999999999986
No 55
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.06 E-value=9.7e-06 Score=80.72 Aligned_cols=105 Identities=14% Similarity=0.127 Sum_probs=78.2
Q ss_pred cChHHHHHHHHHHHHHHhhhcCCCeEEEeccCC--CCCCCCCceeEEEecCccCCCC---hHHHHHHHHHhccCCcEEEE
Q 022285 19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLS--QLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILI 93 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~--~Lp~~~~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i 93 (299)
++..|+++.|+..++.. .....++.++++|+. .+|+++++||+|++..++||++ ...++++++|+|||||.+++
T Consensus 62 v~giD~s~~~l~~a~~~-~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 62 VIALDFIESVIKKNESI-NGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred EEEEeCCHHHHHHHHHH-hccCCceEEEEecccccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 45668888998876542 223568999999986 5788899999999999999887 36799999999999999999
Q ss_pred EecCCCCccc------hHH--HHHHHHHHHHHCCceece
Q 022285 94 YKKLTSDKGD------VDK--AISALEGKLLLAGFLDAQ 124 (299)
Q Consensus 94 ~~~~~~~~g~------~~~--~~~~l~~~L~laGFv~v~ 124 (299)
.+..-...+. +.. ....+.+.+..+||....
T Consensus 141 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 179 (475)
T PLN02336 141 RESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDED 179 (475)
T ss_pred EeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCC
Confidence 8754222111 111 234677788999998764
No 56
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.94 E-value=4.3e-06 Score=76.31 Aligned_cols=83 Identities=17% Similarity=0.141 Sum_probs=59.2
Q ss_pred CCccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCC--CCceeEEEecCccCCCChHHHHHHHHHhccCCc-EEE
Q 022285 16 DKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVE--SFSIDTVLSISSSHELPGDQLLEEISRVLKPGG-TIL 92 (299)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~--~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG-~l~ 92 (299)
...|...|++++|++.|.+.-...+.+....-++.+-.+|- ++|.|+|++...+|||..+.+++++.|+||+.| .+.
T Consensus 55 ~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 55 YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIA 134 (261)
T ss_pred hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEE
Confidence 44455668999999998764222222333333333333444 999999999999999999999999999999877 777
Q ss_pred EEecCC
Q 022285 93 IYKKLT 98 (299)
Q Consensus 93 i~~~~~ 98 (299)
++...+
T Consensus 135 vW~Y~d 140 (261)
T KOG3010|consen 135 VWNYND 140 (261)
T ss_pred EEEccC
Confidence 776653
No 57
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.94 E-value=3.2e-05 Score=68.79 Aligned_cols=79 Identities=15% Similarity=0.224 Sum_probs=62.6
Q ss_pred cChHHHHHHHHHHHHHHhhhcCC-CeEEEeccCCCCCCCC-CceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEEEEe
Q 022285 19 LPVSAVLNAIRDLGDEAVEQCDP-QIITQASSLSQLPVES-FSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYK 95 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~~~-~i~~~~gd~~~Lp~~~-~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~ 95 (299)
++..|.++.|+..++.+...... ++.+..+++..++... ++||+|++...++++. +..+++++.++|+|||.+++..
T Consensus 70 v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 70 VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 34556778888888876654433 6888889988877553 7899999998888876 7889999999999999999876
Q ss_pred cC
Q 022285 96 KL 97 (299)
Q Consensus 96 ~~ 97 (299)
..
T Consensus 150 ~~ 151 (224)
T TIGR01983 150 IN 151 (224)
T ss_pred cC
Confidence 53
No 58
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.90 E-value=1e-05 Score=72.98 Aligned_cols=80 Identities=16% Similarity=0.178 Sum_probs=71.3
Q ss_pred ecCCccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEE
Q 022285 14 SEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTIL 92 (299)
Q Consensus 14 ~~~~~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~ 92 (299)
|.++.++..|-+.+|++.|++ ..++++|..+|+.++- ++..+|+++++.++||++ ...+|..+...|.|||.|.
T Consensus 52 wP~A~i~GiDsS~~Mla~Aa~----rlp~~~f~~aDl~~w~-p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LA 126 (257)
T COG4106 52 WPDAVITGIDSSPAMLAKAAQ----RLPDATFEEADLRTWK-PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLA 126 (257)
T ss_pred CCCCeEeeccCCHHHHHHHHH----hCCCCceecccHhhcC-CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEE
Confidence 789999999999999999854 3688999999999885 577899999999999999 6789999999999999999
Q ss_pred EEecCC
Q 022285 93 IYKKLT 98 (299)
Q Consensus 93 i~~~~~ 98 (299)
++-+.+
T Consensus 127 VQmPdN 132 (257)
T COG4106 127 VQMPDN 132 (257)
T ss_pred EECCCc
Confidence 887653
No 59
>PLN03075 nicotianamine synthase; Provisional
Probab=97.88 E-value=3.4e-05 Score=72.83 Aligned_cols=76 Identities=9% Similarity=0.187 Sum_probs=62.2
Q ss_pred cChHHHHHHHHHHHHHHhhh---cCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC---hHHHHHHHHHhccCCcEEE
Q 022285 19 LPVSAVLNAIRDLGDEAVEQ---CDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTIL 92 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~---~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~ 92 (299)
++..|..+++.+.|++.+.. ...++.|..+|+.+++-....||+|++. ++|++. ...++.++++.|+|||.|+
T Consensus 152 ~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lv 230 (296)
T PLN03075 152 FHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLM 230 (296)
T ss_pred EEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEE
Confidence 44668889999999987643 2468999999998865345789999999 777662 6889999999999999999
Q ss_pred EEe
Q 022285 93 IYK 95 (299)
Q Consensus 93 i~~ 95 (299)
+..
T Consensus 231 lr~ 233 (296)
T PLN03075 231 LRS 233 (296)
T ss_pred Eec
Confidence 886
No 60
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.87 E-value=5e-05 Score=72.41 Aligned_cols=97 Identities=20% Similarity=0.118 Sum_probs=72.7
Q ss_pred cChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCCCCCCceeEEEecCccCC--------C-C-hHHHHHHHHHhccC
Q 022285 19 LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHE--------L-P-GDQLLEEISRVLKP 87 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~--------~-~-~~~~L~ei~RvLKP 87 (299)
+...|+.+.|+..++.++.+. ..++.+..+|+.++|+++++||+|++...+.. . . ...++++++|+|||
T Consensus 207 v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~ 286 (329)
T TIGR01177 207 VIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKS 286 (329)
T ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccC
Confidence 445688899999988877553 34578899999999998899999999743211 1 1 36799999999999
Q ss_pred CcEEEEEecCCCCccchHHHHHHHHHHHHHCCceeceee
Q 022285 88 GGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI 126 (299)
Q Consensus 88 GG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~ 126 (299)
||++++..+... ++...+..+|| .+...
T Consensus 287 gG~lv~~~~~~~----------~~~~~~~~~g~-i~~~~ 314 (329)
T TIGR01177 287 EGWIVYAVPTRI----------DLESLAEDAFR-VVKRF 314 (329)
T ss_pred CcEEEEEEcCCC----------CHHHHHhhcCc-chhee
Confidence 999988876431 34466888999 55443
No 61
>PTZ00146 fibrillarin; Provisional
Probab=97.82 E-value=0.00064 Score=64.19 Aligned_cols=126 Identities=17% Similarity=0.113 Sum_probs=74.6
Q ss_pred ccccceEEEEecCCccC---hH------------HHHHHHHHHHHHHhhhcCCCeEEEeccCCC---CCCCCCceeEEEe
Q 022285 4 GKMQSAVLALSEDKILP---VS------------AVLNAIRDLGDEAVEQCDPQIITQASSLSQ---LPVESFSIDTVLS 65 (299)
Q Consensus 4 ~~~~~~vLlL~~~~~vt---~~------------dlse~m~~~A~~~~~~~~~~i~~~~gd~~~---Lp~~~~sfD~Vls 65 (299)
++.|++||.|-.++-.+ +. |+++.|.+.....+.. ..||.++.+|+.. +++...+||+|++
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-r~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-RPNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-cCCCEEEECCccChhhhhcccCCCCEEEE
Confidence 45677888886544433 22 2333332222221111 2578888888853 2223458999999
Q ss_pred cCccCCCChHHHHHHHHHhccCCcEEEEEecC-CCCccc-hHHHHHHHHHHHHHCCceeceeeccccc
Q 022285 66 ISSSHELPGDQLLEEISRVLKPGGTILIYKKL-TSDKGD-VDKAISALEGKLLLAGFLDAQRIQLKSV 131 (299)
Q Consensus 66 ~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~-~~~~g~-~~~~~~~l~~~L~laGFv~v~~~~~kp~ 131 (299)
.... ..+...++.+++++|||||.|+|.... ....+. +...+++-...|..+||..++.....|.
T Consensus 209 Dva~-pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py 275 (293)
T PTZ00146 209 DVAQ-PDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPF 275 (293)
T ss_pred eCCC-cchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCc
Confidence 7742 112446677899999999999984332 212222 3333333337799999998877665553
No 62
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.76 E-value=8.9e-05 Score=66.43 Aligned_cols=86 Identities=13% Similarity=0.161 Sum_probs=64.7
Q ss_pred cccceEEEEecC---------------CccChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCCCCCCceeEEEecCc
Q 022285 5 KMQSAVLALSED---------------KILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISS 68 (299)
Q Consensus 5 ~~~~~vLlL~~~---------------~~vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~ 68 (299)
+.|++||-+-.| ..++..|..+.|.+.|++++... ..++.++.+|+...+.+...||+|++...
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~ 154 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAA 154 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCC
Confidence 356677777554 24455678899999998877654 45899999999877667789999998776
Q ss_pred cCCCChHHHHHHHHHhccCCcEEEEEe
Q 022285 69 SHELPGDQLLEEISRVLKPGGTILIYK 95 (299)
Q Consensus 69 ~~~~~~~~~L~ei~RvLKPGG~l~i~~ 95 (299)
.++++ ..+++.|||||+|++..
T Consensus 155 ~~~~~-----~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 155 GPDIP-----KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cccch-----HHHHHhhCCCcEEEEEE
Confidence 54433 46788999999998754
No 63
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.75 E-value=6e-05 Score=60.09 Aligned_cols=77 Identities=19% Similarity=0.148 Sum_probs=57.8
Q ss_pred CccChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCC-CCCCCCceeEEEecCccCCCChHHHHHHHHHhccCCcEEEEE
Q 022285 17 KILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQ-LPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIY 94 (299)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~-Lp~~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~ 94 (299)
..++..|.++.|.+.+++++... ..++.++.+++.. ++....+||+|++....+. ...++++++|.|||||+|++.
T Consensus 44 ~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 44 GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGGL--LQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcchh--HHHHHHHHHHHcCCCCEEEEE
Confidence 34567788899999988776543 4578888888764 3444568999998764332 357899999999999999876
Q ss_pred e
Q 022285 95 K 95 (299)
Q Consensus 95 ~ 95 (299)
-
T Consensus 122 ~ 122 (124)
T TIGR02469 122 A 122 (124)
T ss_pred e
Confidence 4
No 64
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.70 E-value=0.00024 Score=64.09 Aligned_cols=99 Identities=17% Similarity=0.212 Sum_probs=70.9
Q ss_pred ccChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCCCCCCceeEEEecCccCC------CC-----------------
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHE------LP----------------- 73 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~------~~----------------- 73 (299)
.++..|+++.|.+.|+.++... ..++.++.+|+.. ++++++||+|+++..++. +.
T Consensus 113 ~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~ 191 (251)
T TIGR03534 113 RVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGED 191 (251)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCc
Confidence 4556788899999998776543 3468999999876 567889999999754321 10
Q ss_pred ----hHHHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCceecee
Q 022285 74 ----GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (299)
Q Consensus 74 ----~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~ 125 (299)
...++.++.++|+|||.+++..... ..+.+...+..+||..++.
T Consensus 192 ~~~~~~~~i~~~~~~L~~gG~~~~~~~~~--------~~~~~~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 192 GLDFYRRIIAQAPRLLKPGGWLLLEIGYD--------QGEAVRALFEAAGFADVET 239 (251)
T ss_pred HHHHHHHHHHHHHHhcccCCEEEEEECcc--------HHHHHHHHHHhCCCCceEE
Confidence 0257889999999999998864321 1235667788899987654
No 65
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.66 E-value=0.00017 Score=62.92 Aligned_cols=96 Identities=13% Similarity=0.073 Sum_probs=68.6
Q ss_pred cChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCCCCCCceeEEEecCccCCCChHHHHHHHHHhccCCcEEEEEecC
Q 022285 19 LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL 97 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~ 97 (299)
++..|.++.|++.|++++... ..++.++.+++. .++ ..+||+|++....++ ...++.++++.|+|||+|++....
T Consensus 58 v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~~~~--~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 58 VTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGGSGGN--LTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECCCccC--HHHHHHHHHHhcCCCeEEEEEEec
Confidence 445578889999998776543 357888888874 344 357999998764332 356889999999999999886543
Q ss_pred CCCccchHHHHHHHHHHHHHCCceecee
Q 022285 98 TSDKGDVDKAISALEGKLLLAGFLDAQR 125 (299)
Q Consensus 98 ~~~~g~~~~~~~~l~~~L~laGFv~v~~ 125 (299)
. ....++...+..+||..++.
T Consensus 134 ~-------~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 134 L-------ENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred H-------hhHHHHHHHHHHCCCCcceE
Confidence 2 11235667888999987654
No 66
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.63 E-value=3.6e-05 Score=71.17 Aligned_cols=79 Identities=14% Similarity=0.203 Sum_probs=64.2
Q ss_pred CCccChHHHHHHHHHHHHHHhhhc---CC----CeEEEeccCCCCCCCCCceeEEEecCccCCCC-hHHHHHHHHHhccC
Q 022285 16 DKILPVSAVLNAIRDLGDEAVEQC---DP----QIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKP 87 (299)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~~~---~~----~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKP 87 (299)
++.|+..|+++.|.+.|+...... .. ++++...+++.+- ..||+|++.-+++|+. ++.++..+.+.|||
T Consensus 111 ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcsevleHV~dp~~~l~~l~~~lkP 187 (282)
T KOG1270|consen 111 GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSEVLEHVKDPQEFLNCLSALLKP 187 (282)
T ss_pred CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHHHHHHHhCHHHHHHHHHHHhCC
Confidence 678889999999999998763321 23 3566677787663 3499999999999886 88999999999999
Q ss_pred CcEEEEEecC
Q 022285 88 GGTILIYKKL 97 (299)
Q Consensus 88 GG~l~i~~~~ 97 (299)
||.++|....
T Consensus 188 ~G~lfittin 197 (282)
T KOG1270|consen 188 NGRLFITTIN 197 (282)
T ss_pred CCceEeeehh
Confidence 9999998764
No 67
>PRK06202 hypothetical protein; Provisional
Probab=97.63 E-value=8.8e-05 Score=66.88 Aligned_cols=77 Identities=14% Similarity=0.102 Sum_probs=60.6
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCCh---HHHHHHHHHhccCCcEEEEE
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIY 94 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l~i~ 94 (299)
.++..|+++.|++.|+++.. ..++.+...++..+++++++||+|+++.++||++. ..++++++|+++ |.+++.
T Consensus 90 ~v~gvD~s~~~l~~a~~~~~--~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 90 EVTAIDPDPRAVAFARANPR--RPGVTFRQAVSDELVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred EEEEEcCCHHHHHHHHhccc--cCCCeEEEEecccccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 45567889999999887543 34577777788888888889999999999999983 469999999998 666666
Q ss_pred ecCC
Q 022285 95 KKLT 98 (299)
Q Consensus 95 ~~~~ 98 (299)
+...
T Consensus 166 dl~~ 169 (232)
T PRK06202 166 DLIR 169 (232)
T ss_pred cccc
Confidence 6543
No 68
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.62 E-value=0.0003 Score=62.05 Aligned_cols=98 Identities=14% Similarity=0.120 Sum_probs=68.5
Q ss_pred ccChHHHHHHHHHHHHHHhhhc--CCCeEEEeccCCCC-CCCCCceeEEEecCccCCCChHHHHHHHHHhccCCcEEEEE
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQL-PVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIY 94 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~--~~~i~~~~gd~~~L-p~~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~ 94 (299)
.++..|.++.|++.+++++... ..++.++.+|+..+ +.....||.|++.... .....++.++.++|||||++++.
T Consensus 67 ~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~~--~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 67 KVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGGS--EKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCCc--ccHHHHHHHHHHHcCCCcEEEEE
Confidence 3456688899999998776543 35788888888753 3334689999986422 12467899999999999999874
Q ss_pred ecCCCCccchHHHHHHHHHHHHHCCceecee
Q 022285 95 KKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (299)
Q Consensus 95 ~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~ 125 (299)
.... .....+...|...|| +.+.
T Consensus 145 ~~~~-------~~~~~~~~~l~~~g~-~~~~ 167 (198)
T PRK00377 145 AILL-------ETVNNALSALENIGF-NLEI 167 (198)
T ss_pred eecH-------HHHHHHHHHHHHcCC-CeEE
Confidence 4321 123356667788999 4443
No 69
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.61 E-value=0.00011 Score=65.51 Aligned_cols=73 Identities=12% Similarity=0.204 Sum_probs=57.0
Q ss_pred ccChHHHHHHHHHHHHHHhhhcC--CCeEEEeccCCCCCCCCCceeEEEecCccCCCChHHHHHHHHHhccCCcEEEEEe
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 95 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~--~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~ 95 (299)
.++..|.++.|.+.|++++.... .++.++.+|+........+||+|++..+..+++ .++++.|+|||+|++..
T Consensus 99 ~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~-----~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 99 KVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIP-----SALVRQLKDGGVLVIPV 173 (205)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccCcchhh-----HHHHHhcCcCcEEEEEE
Confidence 45567888999999988775542 368999999987655567999999988766544 47889999999998754
No 70
>PRK14968 putative methyltransferase; Provisional
Probab=97.61 E-value=0.00031 Score=60.36 Aligned_cols=100 Identities=19% Similarity=0.182 Sum_probs=67.8
Q ss_pred ccChHHHHHHHHHHHHHHhhhcC-CC--eEEEeccCCCCCCCCCceeEEEecCccCCC---------------------C
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQCD-PQ--IITQASSLSQLPVESFSIDTVLSISSSHEL---------------------P 73 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~-~~--i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~---------------------~ 73 (299)
.++..|.++.|...+++++.... .+ +.++.+|+.+ ++.+..||+|+++..+... .
T Consensus 47 ~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (188)
T PRK14968 47 KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGRE 125 (188)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHH
Confidence 34455788889888877664432 22 8888888765 4556689999987543220 0
Q ss_pred -hHHHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCceecee
Q 022285 74 -GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (299)
Q Consensus 74 -~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~ 125 (299)
...+++++.++|||||.+++...... . ...+...+..+||.....
T Consensus 126 ~~~~~i~~~~~~Lk~gG~~~~~~~~~~---~----~~~l~~~~~~~g~~~~~~ 171 (188)
T PRK14968 126 VIDRFLDEVGRYLKPGGRILLLQSSLT---G----EDEVLEYLEKLGFEAEVV 171 (188)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEEcccC---C----HHHHHHHHHHCCCeeeee
Confidence 24579999999999999987764321 1 125667788899976543
No 71
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.60 E-value=0.00014 Score=64.96 Aligned_cols=74 Identities=12% Similarity=0.132 Sum_probs=58.9
Q ss_pred ccChHHHHHHHHHHHHHHhhhcC--CCeEEEeccCCCCCCCCCceeEEEecCccCCCC---hHHHHHHHHHhccCCcEEE
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTIL 92 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~--~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~ 92 (299)
.++..|+++.|+..|++++.... .++.+..+|+.+++ ++||+|++...+++++ ...+++++++++++++.+.
T Consensus 79 ~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 79 IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFT 155 (219)
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 45567899999999988765432 47999999998876 7899999988877775 3578999999999876665
Q ss_pred EE
Q 022285 93 IY 94 (299)
Q Consensus 93 i~ 94 (299)
+.
T Consensus 156 ~~ 157 (219)
T TIGR02021 156 FA 157 (219)
T ss_pred EC
Confidence 43
No 72
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.59 E-value=0.00012 Score=65.30 Aligned_cols=108 Identities=12% Similarity=0.098 Sum_probs=70.0
Q ss_pred cChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC----hHHHHHHHHHhccCCcEEEEE
Q 022285 19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP----GDQLLEEISRVLKPGGTILIY 94 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~----~~~~L~ei~RvLKPGG~l~i~ 94 (299)
++..|+++.-++.|+++... .++|.|+++++.+. .|++.||+|+..-+++++. ...++..+...|+|||.|++.
T Consensus 68 LlavDis~~Al~~Ar~Rl~~-~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g 145 (201)
T PF05401_consen 68 LLAVDISPRALARARERLAG-LPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFG 145 (201)
T ss_dssp EEEEES-HHHHHHHHHHTTT--SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred eEEEeCCHHHHHHHHHhcCC-CCCeEEEECcCCCC-CCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 45668999999999988755 57999999999765 5789999999998888885 246889999999999999998
Q ss_pred ecCCCCccchHHH-HHHHHHHHHHCCceeceeecc
Q 022285 95 KKLTSDKGDVDKA-ISALEGKLLLAGFLDAQRIQL 128 (299)
Q Consensus 95 ~~~~~~~g~~~~~-~~~l~~~L~laGFv~v~~~~~ 128 (299)
.+.+..--.+.+. -.+-...+...-|+.++....
T Consensus 146 ~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~ 180 (201)
T PF05401_consen 146 HARDANCRRWGHAAGAETVLEMLQEHLTEVERVEC 180 (201)
T ss_dssp EE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEE
T ss_pred EecCCcccccCcccchHHHHHHHHHHhhheeEEEE
Confidence 7753110001110 012334555566777665543
No 73
>PRK14967 putative methyltransferase; Provisional
Probab=97.58 E-value=0.00036 Score=62.71 Aligned_cols=96 Identities=19% Similarity=0.196 Sum_probs=66.5
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC----------------------hH
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP----------------------GD 75 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~----------------------~~ 75 (299)
.++..|+++.|++.+++++.....++.++.+|+.. .+++++||+|+++..++... ..
T Consensus 61 ~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (223)
T PRK14967 61 SVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLD 139 (223)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHH
Confidence 56677889999999887765544468888888865 35678999999985433211 23
Q ss_pred HHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCce
Q 022285 76 QLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL 121 (299)
Q Consensus 76 ~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv 121 (299)
.++.+++++|||||++++...... .+. .+...+...||.
T Consensus 140 ~~l~~a~~~Lk~gG~l~~~~~~~~---~~~----~~~~~l~~~g~~ 178 (223)
T PRK14967 140 RLCDAAPALLAPGGSLLLVQSELS---GVE----RTLTRLSEAGLD 178 (223)
T ss_pred HHHHHHHHhcCCCcEEEEEEeccc---CHH----HHHHHHHHCCCC
Confidence 577889999999999998654321 111 344556667774
No 74
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.57 E-value=0.00011 Score=71.68 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=61.0
Q ss_pred CccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC---hHHHHHHHHHhccCCcEEEE
Q 022285 17 KILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILI 93 (299)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i 93 (299)
..|+..|++++|++.|++++.. ..+.+..+|...+ +++||.|++...++|+. ...++++++|+|||||.+++
T Consensus 191 ~~V~giDlS~~~l~~A~~~~~~--l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl 265 (383)
T PRK11705 191 VSVVGVTISAEQQKLAQERCAG--LPVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLL 265 (383)
T ss_pred CEEEEEeCCHHHHHHHHHHhcc--CeEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEE
Confidence 3456679999999999887643 3477888887665 46899999988888875 36899999999999999999
Q ss_pred EecC
Q 022285 94 YKKL 97 (299)
Q Consensus 94 ~~~~ 97 (299)
....
T Consensus 266 ~~i~ 269 (383)
T PRK11705 266 HTIG 269 (383)
T ss_pred EEcc
Confidence 8654
No 75
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.56 E-value=0.00014 Score=64.97 Aligned_cols=73 Identities=18% Similarity=0.101 Sum_probs=58.6
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC---hHHHHHHHHHhccCCcEEEEE
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIY 94 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~ 94 (299)
.++..|+++.|++.|+++. +++.+.++++.. |+++++||+|++..+++|++ ...++++++|++ ++.++|.
T Consensus 69 ~v~giDiS~~~l~~A~~~~----~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 69 HIYGVEINEYAVEKAKAYL----PNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred eEEEEECCHHHHHHHHhhC----CCCcEEEeeccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEE
Confidence 3455688999999987643 457788889888 89999999999999988886 367889999998 5688887
Q ss_pred ecC
Q 022285 95 KKL 97 (299)
Q Consensus 95 ~~~ 97 (299)
+..
T Consensus 142 e~~ 144 (204)
T TIGR03587 142 EYY 144 (204)
T ss_pred Eee
Confidence 754
No 76
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.56 E-value=4.3e-05 Score=69.62 Aligned_cols=77 Identities=13% Similarity=-0.003 Sum_probs=60.5
Q ss_pred ChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEEEEecC
Q 022285 20 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKL 97 (299)
Q Consensus 20 t~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~ 97 (299)
+.-|.+-.|++.++. .+.-.......++|.+.|+|.+++||+|++..++||++ .+..+.++..+|||+|.|+-.-..
T Consensus 99 i~~DtS~~M~~s~~~-~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fiasmlg 176 (325)
T KOG2940|consen 99 IMMDTSYDMIKSCRD-AQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLG 176 (325)
T ss_pred eeeecchHHHHHhhc-cCCCceEEEEEecchhcccccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhc
Confidence 355777788887764 11112344567899999999999999999999999998 677888999999999999865444
No 77
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.49 E-value=0.00017 Score=67.34 Aligned_cols=91 Identities=19% Similarity=0.280 Sum_probs=65.1
Q ss_pred ccccceEEEEec-------------CCccChHHHHHHHHHHHHHHhhhc--CCCeEEEeccCCCCCCCCCceeEEEecCc
Q 022285 4 GKMQSAVLALSE-------------DKILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISS 68 (299)
Q Consensus 4 ~~~~~~vLlL~~-------------~~~vt~~dlse~m~~~A~~~~~~~--~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~ 68 (299)
.+.|++||-|-- +..|+..+++++..+.+++++... ..++.+...|...++. +||.|+++-.
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~~ 136 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIEM 136 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESE
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEec
Confidence 456778888743 456677788999999998877654 4578899998887754 9999999988
Q ss_pred cCCCC---hHHHHHHHHHhccCCcEEEEEecC
Q 022285 69 SHELP---GDQLLEEISRVLKPGGTILIYKKL 97 (299)
Q Consensus 69 ~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~ 97 (299)
+.|+. ...+++++.|+|||||++++....
T Consensus 137 ~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 137 FEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp GGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred hhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 88874 378999999999999999987553
No 78
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.46 E-value=0.00026 Score=69.35 Aligned_cols=78 Identities=18% Similarity=0.154 Sum_probs=62.0
Q ss_pred cChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCC--CCCCCceeEEEecCccCCCC-------hHHHHHHHHHhccCC
Q 022285 19 LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQL--PVESFSIDTVLSISSSHELP-------GDQLLEEISRVLKPG 88 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~L--p~~~~sfD~Vls~~~~~~~~-------~~~~L~ei~RvLKPG 88 (299)
+...|+...|+..|.+++... ..++.++.+|+..+ ++++++||.|++++...|.. ...++.+++|+|+||
T Consensus 149 ~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpG 228 (390)
T PRK14121 149 FIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPG 228 (390)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCC
Confidence 345677888888887766543 56899999998765 57899999999988766542 257999999999999
Q ss_pred cEEEEEec
Q 022285 89 GTILIYKK 96 (299)
Q Consensus 89 G~l~i~~~ 96 (299)
|.+.+..-
T Consensus 229 G~l~l~TD 236 (390)
T PRK14121 229 GTLELRTD 236 (390)
T ss_pred cEEEEEEE
Confidence 99988764
No 79
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.45 E-value=0.00046 Score=61.68 Aligned_cols=72 Identities=11% Similarity=0.114 Sum_probs=55.2
Q ss_pred cChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCCCCCCceeEEEecCccCCCChHHHHHHHHHhccCCcEEEEEe
Q 022285 19 LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 95 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~ 95 (299)
++..|..+.|.+.|++++... ..++.++.+|+.........||+|++.....++ ...+.+.|+|||+|++..
T Consensus 105 V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~-----~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 105 VVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAGPKI-----PEALIDQLKEGGILVMPV 177 (215)
T ss_pred EEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCCcccc-----cHHHHHhcCcCcEEEEEE
Confidence 556677889999998877654 468999999987765456789999987654433 356889999999998754
No 80
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.38 E-value=0.00031 Score=62.51 Aligned_cols=82 Identities=18% Similarity=0.165 Sum_probs=61.8
Q ss_pred cCCccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCCh---HHHHHHHHHhccCCcEE
Q 022285 15 EDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTI 91 (299)
Q Consensus 15 ~~~~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l 91 (299)
.|-.||..|.++..++.+++.+++..-.|...+.|+....++ ..||+|++..+++++++ +.+++.+...++|||.+
T Consensus 51 ~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~ 129 (192)
T PF03848_consen 51 QGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYN 129 (192)
T ss_dssp TT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEE
Confidence 366788888888777777665555555699999999988875 68999999888888873 56899999999999999
Q ss_pred EEEecC
Q 022285 92 LIYKKL 97 (299)
Q Consensus 92 ~i~~~~ 97 (299)
++....
T Consensus 130 li~~~~ 135 (192)
T PF03848_consen 130 LIVTFM 135 (192)
T ss_dssp EEEEEB
T ss_pred EEEEec
Confidence 886543
No 81
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.35 E-value=0.00051 Score=61.87 Aligned_cols=81 Identities=12% Similarity=0.051 Sum_probs=60.8
Q ss_pred CCccChHHHHHHHHHHHHHHhhh-------------cCCCeEEEeccCCCCCCC-CCceeEEEecCccCCCCh---HHHH
Q 022285 16 DKILPVSAVLNAIRDLGDEAVEQ-------------CDPQIITQASSLSQLPVE-SFSIDTVLSISSSHELPG---DQLL 78 (299)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~~-------------~~~~i~~~~gd~~~Lp~~-~~sfD~Vls~~~~~~~~~---~~~L 78 (299)
|-.|+..|+++.+++.+.+.... ...++.+.++|+..++.. ...||.|+-...++++++ ...+
T Consensus 56 G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~ 135 (213)
T TIGR03840 56 GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYA 135 (213)
T ss_pred CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHH
Confidence 56788889999888875432110 135789999999888643 357999998877888873 5689
Q ss_pred HHHHHhccCCcEEEEEec
Q 022285 79 EEISRVLKPGGTILIYKK 96 (299)
Q Consensus 79 ~ei~RvLKPGG~l~i~~~ 96 (299)
+.+.++|||||++++...
T Consensus 136 ~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 136 AHLLALLPPGARQLLITL 153 (213)
T ss_pred HHHHHHcCCCCeEEEEEE
Confidence 999999999998665543
No 82
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.34 E-value=0.00095 Score=63.24 Aligned_cols=88 Identities=22% Similarity=0.337 Sum_probs=64.8
Q ss_pred CeEEEeccCCCCCCCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEEEEecC-CCCc-------cchH-------
Q 022285 42 QIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKL-TSDK-------GDVD------- 105 (299)
Q Consensus 42 ~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~-~~~~-------g~~~------- 105 (299)
.+.++--.++.||. .+.||+|++.-++.|.. +-..|.++...|+|||.|++.... ++.. +.+.
T Consensus 166 ~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~F 244 (315)
T PF08003_consen 166 PVFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWF 244 (315)
T ss_pred cEEEcCcchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEE
Confidence 34444457889987 78999999998876655 788999999999999999987653 2211 0111
Q ss_pred -HHHHHHHHHHHHCCceeceeecccc
Q 022285 106 -KAISALEGKLLLAGFLDAQRIQLKS 130 (299)
Q Consensus 106 -~~~~~l~~~L~laGFv~v~~~~~kp 130 (299)
.+...+...|..+||.+++...+.+
T Consensus 245 iPs~~~L~~wl~r~gF~~v~~v~~~~ 270 (315)
T PF08003_consen 245 IPSVAALKNWLERAGFKDVRCVDVSP 270 (315)
T ss_pred eCCHHHHHHHHHHcCCceEEEecCcc
Confidence 1346888999999999998776443
No 83
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.24 E-value=0.0006 Score=64.31 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=58.9
Q ss_pred CCccChHHHHHHHHHHHHHHhhhcCC--CeEEEeccCCC-CCCCCCc----eeEEEecCccCCCC---hHHHHHHHHHhc
Q 022285 16 DKILPVSAVLNAIRDLGDEAVEQCDP--QIITQASSLSQ-LPVESFS----IDTVLSISSSHELP---GDQLLEEISRVL 85 (299)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~~~~~--~i~~~~gd~~~-Lp~~~~s----fD~Vls~~~~~~~~---~~~~L~ei~RvL 85 (299)
+..++..|++++|++.+++++....+ ++.++++|+.. ++++... ..+++..+.+++++ ...++++++++|
T Consensus 88 ~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L 167 (301)
T TIGR03438 88 PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLL 167 (301)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhc
Confidence 34566789999999999887655443 46678899876 4554443 33444455677776 356899999999
Q ss_pred cCCcEEEEEecC
Q 022285 86 KPGGTILIYKKL 97 (299)
Q Consensus 86 KPGG~l~i~~~~ 97 (299)
+|||.|+|....
T Consensus 168 ~pgG~~lig~d~ 179 (301)
T TIGR03438 168 GPGGGLLIGVDL 179 (301)
T ss_pred CCCCEEEEeccC
Confidence 999999886543
No 84
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.23 E-value=0.00053 Score=66.09 Aligned_cols=78 Identities=19% Similarity=0.126 Sum_probs=58.8
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC------hHHHHHHHHHhccCCcEE
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP------GDQLLEEISRVLKPGGTI 91 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~------~~~~L~ei~RvLKPGG~l 91 (299)
.++..|++..|++.|+.+++.......+..+|+... ..+.||+|+++..+|+.. ...++.++.+.|||||.|
T Consensus 222 ~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L 299 (342)
T PRK09489 222 RLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGEL 299 (342)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEE
Confidence 455668888999999887655433456667776542 367899999999888631 378999999999999999
Q ss_pred EEEecC
Q 022285 92 LIYKKL 97 (299)
Q Consensus 92 ~i~~~~ 97 (299)
+|....
T Consensus 300 ~iVan~ 305 (342)
T PRK09489 300 RIVANA 305 (342)
T ss_pred EEEEeC
Confidence 887643
No 85
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.23 E-value=0.0023 Score=58.75 Aligned_cols=99 Identities=18% Similarity=0.216 Sum_probs=68.2
Q ss_pred ccChHHHHHHHHHHHHHHhh-hcCCCeEEEeccCCCCCCCCCceeEEEecCccCC------CC-----------------
Q 022285 18 ILPVSAVLNAIRDLGDEAVE-QCDPQIITQASSLSQLPVESFSIDTVLSISSSHE------LP----------------- 73 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~-~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~------~~----------------- 73 (299)
.++..|+++.+++.|++++. ....++.++.+|+.. ++++++||+|+++..+.. +.
T Consensus 134 ~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~ 212 (275)
T PRK09328 134 EVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGED 212 (275)
T ss_pred EEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCC
Confidence 45566788899999988765 335689999998854 344679999999743211 00
Q ss_pred ----hHHHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCceecee
Q 022285 74 ----GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (299)
Q Consensus 74 ----~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~ 125 (299)
...++.++.++|+|||.+++.... . ....+...+..+||.++..
T Consensus 213 g~~~~~~~~~~~~~~Lk~gG~l~~e~g~------~--~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 213 GLDFYRRIIEQAPRYLKPGGWLLLEIGY------D--QGEAVRALLAAAGFADVET 260 (275)
T ss_pred HHHHHHHHHHHHHHhcccCCEEEEEECc------h--HHHHHHHHHHhCCCceeEE
Confidence 145777888999999999985421 1 1125667778899986654
No 86
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.23 E-value=0.001 Score=59.28 Aligned_cols=83 Identities=12% Similarity=0.101 Sum_probs=58.8
Q ss_pred cceEEEEecCCc------------cChHHHHHHHHHHHHHHhhhcC--CCeEEEeccCCCCCCCCCceeEEEecCccCCC
Q 022285 7 QSAVLALSEDKI------------LPVSAVLNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISSSHEL 72 (299)
Q Consensus 7 ~~~vLlL~~~~~------------vt~~dlse~m~~~A~~~~~~~~--~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~ 72 (299)
+.+||-|-.|+. ++..|+++.|+..|+++..... .++.+..+|+ +..+++||+|++..+++|+
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~fD~v~~~~~l~~~ 140 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL---ESLLGRFDTVVCLDVLIHY 140 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc---hhccCCcCEEEEcchhhcC
Confidence 456777755443 4456778999999988764432 4788998884 4456889999999888776
Q ss_pred C---hHHHHHHHHHhccCCcEEE
Q 022285 73 P---GDQLLEEISRVLKPGGTIL 92 (299)
Q Consensus 73 ~---~~~~L~ei~RvLKPGG~l~ 92 (299)
+ ...++.++.+.+++++.+.
T Consensus 141 ~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 141 PQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred CHHHHHHHHHHHHhhcCCeEEEE
Confidence 6 3567888888776555443
No 87
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.20 E-value=0.0014 Score=58.80 Aligned_cols=95 Identities=17% Similarity=0.069 Sum_probs=60.8
Q ss_pred ccccceEEEEecCCccChHHHHHHHHHHHHH-Hhh----hcCCCeEEEeccCCCCC--------CCCCceeEEEecCccC
Q 022285 4 GKMQSAVLALSEDKILPVSAVLNAIRDLGDE-AVE----QCDPQIITQASSLSQLP--------VESFSIDTVLSISSSH 70 (299)
Q Consensus 4 ~~~~~~vLlL~~~~~vt~~dlse~m~~~A~~-~~~----~~~~~i~~~~gd~~~Lp--------~~~~sfD~Vls~~~~~ 70 (299)
.+.|.+||-|-.++-.-...+.+.+-....- .+. ...+++.++++|+...+ +.+.+||+|++..+.+
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~ 128 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPN 128 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCc
Confidence 3557778888666554333332221000000 000 01246889999998863 6788999999987655
Q ss_pred CCC-h-----------HHHHHHHHHhccCCcEEEEEecCC
Q 022285 71 ELP-G-----------DQLLEEISRVLKPGGTILIYKKLT 98 (299)
Q Consensus 71 ~~~-~-----------~~~L~ei~RvLKPGG~l~i~~~~~ 98 (299)
+.. + ..++++++|+|||||.|++..+..
T Consensus 129 ~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 129 MSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 432 1 458999999999999999987754
No 88
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.17 E-value=0.0011 Score=49.39 Aligned_cols=79 Identities=22% Similarity=0.310 Sum_probs=58.6
Q ss_pred CCccChHHHHHHHHHHHHHHh-hhcCCCeEEEeccCCCCCC-CCCceeEEEecCccCC-CC-hHHHHHHHHHhccCCcEE
Q 022285 16 DKILPVSAVLNAIRDLGDEAV-EQCDPQIITQASSLSQLPV-ESFSIDTVLSISSSHE-LP-GDQLLEEISRVLKPGGTI 91 (299)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~-~~~~~~i~~~~gd~~~Lp~-~~~sfD~Vls~~~~~~-~~-~~~~L~ei~RvLKPGG~l 91 (299)
...+...|+.+.+...+++.. .....++.+..++..+... ....||+|++...+++ .. ...++..+.+.|+|||.+
T Consensus 21 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~ 100 (107)
T cd02440 21 GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVL 100 (107)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEE
Confidence 344456667777777766322 2235678888888887764 5678999999988776 44 578999999999999999
Q ss_pred EEE
Q 022285 92 LIY 94 (299)
Q Consensus 92 ~i~ 94 (299)
++.
T Consensus 101 ~~~ 103 (107)
T cd02440 101 VLT 103 (107)
T ss_pred EEE
Confidence 875
No 89
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.14 E-value=0.0024 Score=58.11 Aligned_cols=93 Identities=18% Similarity=0.208 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCeEEEeccC-CCCCCCCCceeEEEecCccCCC---------C---hHHHHHHHHHhccC
Q 022285 21 VSAVLNAIRDLGDEAVEQCDPQIITQASSL-SQLPVESFSIDTVLSISSSHEL---------P---GDQLLEEISRVLKP 87 (299)
Q Consensus 21 ~~dlse~m~~~A~~~~~~~~~~i~~~~gd~-~~Lp~~~~sfD~Vls~~~~~~~---------~---~~~~L~ei~RvLKP 87 (299)
..|++..|+++|..+.-. ..+ +.+|+ +-+||+.++||.++++.+++|+ | ...++..++.+|++
T Consensus 77 GvDiSpsML~~a~~~e~e--gdl--il~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~r 152 (270)
T KOG1541|consen 77 GVDISPSMLEQAVERELE--GDL--ILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKR 152 (270)
T ss_pred eecCCHHHHHHHHHhhhh--cCe--eeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhcc
Confidence 458999999999753211 122 22222 6789999999999999876653 1 14578889999999
Q ss_pred CcEEEEEecCCCCccchHHHHHHHHHHHHHCCcee
Q 022285 88 GGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD 122 (299)
Q Consensus 88 GG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~ 122 (299)
|++.+++....+ ....+.+....+.|||--
T Consensus 153 g~raV~QfYpen-----~~q~d~i~~~a~~aGF~G 182 (270)
T KOG1541|consen 153 GARAVLQFYPEN-----EAQIDMIMQQAMKAGFGG 182 (270)
T ss_pred CceeEEEecccc-----hHHHHHHHHHHHhhccCC
Confidence 999998876432 234456778899999974
No 90
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.12 E-value=0.00041 Score=55.12 Aligned_cols=80 Identities=16% Similarity=0.255 Sum_probs=59.5
Q ss_pred CccChHHHHHHHHHHHHHHhhhc--CCCeEEEeccCCCCC--CCCCceeEEEecCccCCCC---------hHHHHHHHHH
Q 022285 17 KILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLP--VESFSIDTVLSISSSHELP---------GDQLLEEISR 83 (299)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~~--~~~i~~~~gd~~~Lp--~~~~sfD~Vls~~~~~~~~---------~~~~L~ei~R 83 (299)
..++..|+.+...+.|+.++... ..++.+.++|+..++ +++++||+|+++..+.... ...++.++.+
T Consensus 24 ~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~ 103 (117)
T PF13659_consen 24 ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAAR 103 (117)
T ss_dssp CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHH
T ss_pred CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 44556677788888888776543 467999999998876 8899999999987654321 2578999999
Q ss_pred hccCCcEEEEEec
Q 022285 84 VLKPGGTILIYKK 96 (299)
Q Consensus 84 vLKPGG~l~i~~~ 96 (299)
+|||||.+++..+
T Consensus 104 ~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 104 LLKPGGVLVFITP 116 (117)
T ss_dssp HEEEEEEEEEEEE
T ss_pred HcCCCeEEEEEeC
Confidence 9999999987653
No 91
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=97.11 E-value=0.0012 Score=64.51 Aligned_cols=79 Identities=16% Similarity=0.093 Sum_probs=59.4
Q ss_pred CccChHHHHHHHHHHHHHHhhhcC----CCeEEEeccCCCCCCCCCceeEEEecCccCCCC------hHHHHHHHHHhcc
Q 022285 17 KILPVSAVLNAIRDLGDEAVEQCD----PQIITQASSLSQLPVESFSIDTVLSISSSHELP------GDQLLEEISRVLK 86 (299)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~~~----~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~------~~~~L~ei~RvLK 86 (299)
..++..|.++.|++.|+++++... .++.+..+|+.+. ++..+||+|+++..+|... ...++.+++|+|+
T Consensus 253 ~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lk 331 (378)
T PRK15001 253 AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLK 331 (378)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcc
Confidence 345677888899999988764321 3678888887542 3456899999998776532 3578899999999
Q ss_pred CCcEEEEEec
Q 022285 87 PGGTILIYKK 96 (299)
Q Consensus 87 PGG~l~i~~~ 96 (299)
|||.|++...
T Consensus 332 pGG~L~iV~n 341 (378)
T PRK15001 332 INGELYIVAN 341 (378)
T ss_pred cCCEEEEEEe
Confidence 9999988853
No 92
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.03 E-value=0.0014 Score=56.56 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=57.3
Q ss_pred cChHHHHHHHHHHHHHHhhhcC-CCeEEEeccCCCCCCCCCceeEEEecCccCCCC------hHHHHHHHHHhccCCcEE
Q 022285 19 LPVSAVLNAIRDLGDEAVEQCD-PQIITQASSLSQLPVESFSIDTVLSISSSHELP------GDQLLEEISRVLKPGGTI 91 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~~-~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~------~~~~L~ei~RvLKPGG~l 91 (299)
++..|+.+.++..++++++... .++.+..+|... ++++..||+|+++..++.-. ...++.+..+.|||||.|
T Consensus 58 v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l 136 (170)
T PF05175_consen 58 VTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRL 136 (170)
T ss_dssp EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEE
Confidence 5566888899999988776542 338888888754 34578999999998766433 367899999999999999
Q ss_pred EEEecC
Q 022285 92 LIYKKL 97 (299)
Q Consensus 92 ~i~~~~ 97 (299)
++....
T Consensus 137 ~lv~~~ 142 (170)
T PF05175_consen 137 FLVINS 142 (170)
T ss_dssp EEEEET
T ss_pred EEEeec
Confidence 766543
No 93
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.02 E-value=0.0048 Score=56.96 Aligned_cols=121 Identities=11% Similarity=0.141 Sum_probs=82.2
Q ss_pred CccChHHHHHHHHHHHHHHhhh--cCCCeEEEeccCCCCC--CCCCceeEEEecCcc----------------CC-C--C
Q 022285 17 KILPVSAVLNAIRDLGDEAVEQ--CDPQIITQASSLSQLP--VESFSIDTVLSISSS----------------HE-L--P 73 (299)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~--~~~~i~~~~gd~~~Lp--~~~~sfD~Vls~~~~----------------~~-~--~ 73 (299)
+.+...|+.++|...|+++++. ...++++..+|+.++. ...++||+|+++-.+ +| . .
T Consensus 69 a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~ 148 (248)
T COG4123 69 AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLD 148 (248)
T ss_pred CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCC
Confidence 4555778889999999987754 4789999999999773 445579999998531 11 1 1
Q ss_pred hHHHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCceeceeecccccCccceeeeeeeecC
Q 022285 74 GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKK 145 (299)
Q Consensus 74 ~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~~~kp~~~~~~~~~~i~a~K 145 (299)
.+.+++-..++|||||+|.+.-... +..++...+...+|.......+-|-.......+.+.+.|
T Consensus 149 le~~i~~a~~~lk~~G~l~~V~r~e--------rl~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k 212 (248)
T COG4123 149 LEDLIRAAAKLLKPGGRLAFVHRPE--------RLAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIK 212 (248)
T ss_pred HHHHHHHHHHHccCCCEEEEEecHH--------HHHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEec
Confidence 4788999999999999998776432 233566777777887655544433211222233455544
No 94
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.01 E-value=0.0028 Score=56.31 Aligned_cols=86 Identities=12% Similarity=0.057 Sum_probs=60.4
Q ss_pred ccceEEEEecCCc------------cChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCCCCCCceeEEEecCccCCC
Q 022285 6 MQSAVLALSEDKI------------LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHEL 72 (299)
Q Consensus 6 ~~~~vLlL~~~~~------------vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~ 72 (299)
.+.+||-+-.|+- ++..|.++.|.+.|++++.+. ..++.+..+|+.....+...||+|++....+++
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~ 157 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPEI 157 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCchhh
Confidence 4567888766543 233455678888888776553 456899999876532234789999998755543
Q ss_pred ChHHHHHHHHHhccCCcEEEEEec
Q 022285 73 PGDQLLEEISRVLKPGGTILIYKK 96 (299)
Q Consensus 73 ~~~~~L~ei~RvLKPGG~l~i~~~ 96 (299)
..++++.|+|||++++...
T Consensus 158 -----~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 158 -----PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred -----hHHHHHhcCCCcEEEEEEc
Confidence 4567899999999987654
No 95
>PRK01581 speE spermidine synthase; Validated
Probab=96.97 E-value=0.0043 Score=60.37 Aligned_cols=103 Identities=12% Similarity=0.153 Sum_probs=69.1
Q ss_pred cChHHHHHHHHHHHHHH--h---h---hcCCCeEEEeccCCC-CCCCCCceeEEEecCccCC------CChHHHHHHHHH
Q 022285 19 LPVSAVLNAIRDLGDEA--V---E---QCDPQIITQASSLSQ-LPVESFSIDTVLSISSSHE------LPGDQLLEEISR 83 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~--~---~---~~~~~i~~~~gd~~~-Lp~~~~sfD~Vls~~~~~~------~~~~~~L~ei~R 83 (299)
++..|+.++|++.|++. + . ...+++.++.+|+.. ++-..+.||+|++...-.. +....+++.+++
T Consensus 177 It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~ 256 (374)
T PRK01581 177 VDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIAT 256 (374)
T ss_pred EEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHH
Confidence 34557788899999851 1 1 126899999998886 3444678999998753211 114679999999
Q ss_pred hccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCceece
Q 022285 84 VLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ 124 (299)
Q Consensus 84 vLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~ 124 (299)
.|+|||.|++...... .-......+...+..+||....
T Consensus 257 ~LkPgGV~V~Qs~sp~---~~~~~~~~i~~tL~~af~~v~~ 294 (374)
T PRK01581 257 FLTEDGAFVCQSNSPA---DAPLVYWSIGNTIEHAGLTVKS 294 (374)
T ss_pred hcCCCcEEEEecCChh---hhHHHHHHHHHHHHHhCCceEE
Confidence 9999999987743211 1112223466788888887653
No 96
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=96.95 E-value=0.0021 Score=58.08 Aligned_cols=87 Identities=14% Similarity=0.106 Sum_probs=63.7
Q ss_pred cceEEEEec------------CCccChHHHHHHHHHHHHHH--hh-----------hcCCCeEEEeccCCCCCCCC-Cce
Q 022285 7 QSAVLALSE------------DKILPVSAVLNAIRDLGDEA--VE-----------QCDPQIITQASSLSQLPVES-FSI 60 (299)
Q Consensus 7 ~~~vLlL~~------------~~~vt~~dlse~m~~~A~~~--~~-----------~~~~~i~~~~gd~~~Lp~~~-~sf 60 (299)
+.+||.+.- |..|+..|+++..++.+... +. ....+|.+.++|+.+++... ..|
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~f 117 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADV 117 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCe
Confidence 457776643 56677889998877765321 11 01357889999999885432 589
Q ss_pred eEEEecCccCCCC---hHHHHHHHHHhccCCcEEEE
Q 022285 61 DTVLSISSSHELP---GDQLLEEISRVLKPGGTILI 93 (299)
Q Consensus 61 D~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i 93 (299)
|.|+-...+++++ ....++.++++|+|||++++
T Consensus 118 d~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 118 DAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred eEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 9999888888887 36789999999999997554
No 97
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=96.93 E-value=0.0049 Score=57.79 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=66.3
Q ss_pred ccChHHHHHHHHHHHHHHhhhc--CCCeEEEeccCCCCCCCCCceeEEEecCccC-------------CCC---------
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSH-------------ELP--------- 73 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~--~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~-------------~~~--------- 73 (299)
.++..|+++.+++.|++++... ..++.++.+|+.. +++..+||+|+++-... +-+
T Consensus 147 ~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~d 225 (284)
T TIGR03533 147 EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGED 225 (284)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCc
Confidence 4567788999999999887643 3479999999753 34566899999973211 111
Q ss_pred ----hHHHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCceec
Q 022285 74 ----GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA 123 (299)
Q Consensus 74 ----~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v 123 (299)
...+++++.+.|+|||++++..... . ..+...+..+||.-.
T Consensus 226 Gl~~~~~il~~a~~~L~~gG~l~~e~g~~------~---~~v~~~~~~~~~~~~ 270 (284)
T TIGR03533 226 GLDLVRRILAEAADHLNENGVLVVEVGNS------M---EALEEAYPDVPFTWL 270 (284)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEECcC------H---HHHHHHHHhCCCcee
Confidence 1456888999999999998654321 1 245666777888653
No 98
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=96.92 E-value=0.0057 Score=60.53 Aligned_cols=100 Identities=15% Similarity=0.126 Sum_probs=68.7
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCC-CCceeEEEecCccCCC----------------------C-
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVE-SFSIDTVLSISSSHEL----------------------P- 73 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~-~~sfD~Vls~~~~~~~----------------------~- 73 (299)
.++..|+++.|++.|++++.....++.++.+|+.+..++ ..+||+|+++...... .
T Consensus 277 ~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dG 356 (423)
T PRK14966 277 FVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDG 356 (423)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCch
Confidence 455678899999999988766555899999998654332 4579999997642110 0
Q ss_pred ---hHHHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCceecee
Q 022285 74 ---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (299)
Q Consensus 74 ---~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~ 125 (299)
...++.++.+.|+|||.+++..... ..+.+...+...||..++.
T Consensus 357 L~~yr~Ii~~a~~~LkpgG~lilEiG~~--------Q~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 357 LSCIRTLAQGAPDRLAEGGFLLLEHGFD--------QGAAVRGVLAENGFSGVET 403 (423)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECcc--------HHHHHHHHHHHCCCcEEEE
Confidence 1256667778999999987544221 1125667777889976654
No 99
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.89 E-value=0.0024 Score=58.52 Aligned_cols=91 Identities=16% Similarity=0.225 Sum_probs=62.1
Q ss_pred cChHHHHHHHHHHHHHHhhhcC--CCeEEEeccCCCCCCCCCceeEEEecCccCCCChHHHHHHHHHhccCCcEEEEEec
Q 022285 19 LPVSAVLNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK 96 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~~--~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~ 96 (299)
++..|+++.|++.|++++.... ..+.+ +..+.+||+|+++...+. ...++.++.++|||||.|++...
T Consensus 145 v~giDis~~~l~~A~~n~~~~~~~~~~~~--------~~~~~~fD~Vvani~~~~--~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 145 VLAVDIDPQAVEAARENAELNGVELNVYL--------PQGDLKADVIVANILANP--LLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCceEEE--------ccCCCCcCEEEEcCcHHH--HHHHHHHHHHhcCCCcEEEEEEC
Confidence 5567888999999987765422 12222 222237999998753221 35688999999999999998865
Q ss_pred CCCCccchHHHHHHHHHHHHHCCceeceee
Q 022285 97 LTSDKGDVDKAISALEGKLLLAGFLDAQRI 126 (299)
Q Consensus 97 ~~~~~g~~~~~~~~l~~~L~laGFv~v~~~ 126 (299)
.. .....+...+...||..+...
T Consensus 215 ~~-------~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 215 LE-------EQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred cH-------hhHHHHHHHHHHCCCEEEEEE
Confidence 42 223467778899999876543
No 100
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.87 E-value=0.0013 Score=62.07 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=46.3
Q ss_pred CCeEEEeccCCCCCCC-CCceeEEEecCccCCCC---hHHHHHHHHHhccCCcEEEEEe
Q 022285 41 PQIITQASSLSQLPVE-SFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIYK 95 (299)
Q Consensus 41 ~~i~~~~gd~~~Lp~~-~~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~ 95 (299)
..|.|.+.|+...+++ .+.||+|++.+++.+++ ...+++.+++.|+|||.|++..
T Consensus 204 ~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 204 NYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred ccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 5678888888876654 67899999999988886 4789999999999999988654
No 101
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=96.84 E-value=0.0044 Score=59.18 Aligned_cols=104 Identities=21% Similarity=0.199 Sum_probs=66.4
Q ss_pred CccChHHHHHHHHHHHHHHhhhc------CCCeEEEeccCCCCCCCCCceeEEEecCccCCCCh---HHHHHHHHHhccC
Q 022285 17 KILPVSAVLNAIRDLGDEAVEQC------DPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKP 87 (299)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~~------~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKP 87 (299)
..++..|+++.|++.|++++... ..++.|..+|++.+ +++||+|++..+++|++. ..+++.+.+ +.+
T Consensus 167 ~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~ 242 (315)
T PLN02585 167 AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAE 242 (315)
T ss_pred CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcC
Confidence 34667799999999998876542 34678888888655 578999999988887763 235555554 455
Q ss_pred CcEEEEEecCCCCc------------cch------HHHHHHHHHHHHHCCceecee
Q 022285 88 GGTILIYKKLTSDK------------GDV------DKAISALEGKLLLAGFLDAQR 125 (299)
Q Consensus 88 GG~l~i~~~~~~~~------------g~~------~~~~~~l~~~L~laGFv~v~~ 125 (299)
||.++ ........ +.. -...++++..|..+||.....
T Consensus 243 g~liI-s~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~ 297 (315)
T PLN02585 243 KRLII-SFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARR 297 (315)
T ss_pred CEEEE-EeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEE
Confidence 55544 33211100 000 002357788888999986543
No 102
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.84 E-value=0.00097 Score=60.33 Aligned_cols=109 Identities=14% Similarity=0.083 Sum_probs=71.0
Q ss_pred ccChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCCCCCCceeEEEecCccCCCC---hHHHHHHHHHhccCCcEEEE
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILI 93 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i 93 (299)
.|-+.|.++..++.|++.+... .....+.+..++.+--+...||+|++-+.+.|+. .-.+|......|+|+|.++|
T Consensus 80 ~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 80 EVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp EEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEE
Confidence 3446678888888888765443 3345556667777654567999999999988887 35789999999999999999
Q ss_pred EecCCCCcc--------chHHHHHHHHHHHHHCCceeceee
Q 022285 94 YKKLTSDKG--------DVDKAISALEGKLLLAGFLDAQRI 126 (299)
Q Consensus 94 ~~~~~~~~g--------~~~~~~~~l~~~L~laGFv~v~~~ 126 (299)
.+.....-. ++......+++.+..||+..+...
T Consensus 160 KEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 160 KENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp EEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred EecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 987533211 111123578888999999987643
No 103
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=96.82 E-value=0.0034 Score=57.68 Aligned_cols=83 Identities=22% Similarity=0.271 Sum_probs=59.8
Q ss_pred CeEEEeccCCCCCCCCCceeEEEecCccCCCCh---HHHHHHHHHhccCCcEEEEEecCCCCccchH-------------
Q 022285 42 QIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLTSDKGDVD------------- 105 (299)
Q Consensus 42 ~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~------------- 105 (299)
-+..+..+...-|...+++|.|++++++.-+++ ..++..++++|||||.|++.+.+...+.-+.
T Consensus 127 fv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYV 206 (264)
T KOG2361|consen 127 FVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYV 206 (264)
T ss_pred cceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEE
Confidence 333344444455788999999999998887763 6799999999999999999987654321100
Q ss_pred ---------HHHHHHHHHHHHCCceece
Q 022285 106 ---------KAISALEGKLLLAGFLDAQ 124 (299)
Q Consensus 106 ---------~~~~~l~~~L~laGFv~v~ 124 (299)
-....+...+..+||..++
T Consensus 207 RgDGT~~YfF~~eeL~~~f~~agf~~~~ 234 (264)
T KOG2361|consen 207 RGDGTRAYFFTEEELDELFTKAGFEEVQ 234 (264)
T ss_pred ccCCceeeeccHHHHHHHHHhcccchhc
Confidence 0135677788999998765
No 104
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.81 E-value=0.0036 Score=59.97 Aligned_cols=86 Identities=15% Similarity=0.090 Sum_probs=63.1
Q ss_pred cccceEEEEecCCc---------------cChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCCCCCCceeEEEecCc
Q 022285 5 KMQSAVLALSEDKI---------------LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISS 68 (299)
Q Consensus 5 ~~~~~vLlL~~~~~---------------vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~ 68 (299)
+.+.+||.+-.|+. ++..|.+++|++.|++++... ..++.++.+|+...+.....||+|++...
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g 158 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVG 158 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCc
Confidence 45678888866532 445678889999998776543 45789999998777656678999998765
Q ss_pred cCCCChHHHHHHHHHhccCCcEEEEEe
Q 022285 69 SHELPGDQLLEEISRVLKPGGTILIYK 95 (299)
Q Consensus 69 ~~~~~~~~~L~ei~RvLKPGG~l~i~~ 95 (299)
... ....+++.|+|||++++..
T Consensus 159 ~~~-----ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 159 VDE-----VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hHH-----hHHHHHHhcCCCCEEEEEe
Confidence 443 2345788999999998754
No 105
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=96.73 E-value=0.0065 Score=56.75 Aligned_cols=99 Identities=18% Similarity=0.154 Sum_probs=65.5
Q ss_pred ccChHHHHHHHHHHHHHHhhhc-C-CCeEEEeccCCCCCCCCCceeEEEecCcc-------------CCCC---------
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQC-D-PQIITQASSLSQLPVESFSIDTVLSISSS-------------HELP--------- 73 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~-~-~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~-------------~~~~--------- 73 (299)
.++..|+++.++..|++++... . .++.++.+|+.. +++...||+|+++... +|-|
T Consensus 140 ~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~d 218 (284)
T TIGR00536 140 EVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDD 218 (284)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCc
Confidence 4556688899999999877543 2 359999998865 4555589999997321 1111
Q ss_pred ----hHHHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHHHHHH-HCCceecee
Q 022285 74 ----GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLL-LAGFLDAQR 125 (299)
Q Consensus 74 ----~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~-laGFv~v~~ 125 (299)
...++.++.+.|+|||.|++..... .. ..+...+. ..||.+++.
T Consensus 219 gl~~~~~ii~~a~~~L~~gG~l~~e~g~~-----q~---~~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 219 GLNILRQIIELAPDYLKPNGFLVCEIGNW-----QQ---KSLKELLRIKFTWYDVEN 267 (284)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEECcc-----HH---HHHHHHHHhcCCCceeEE
Confidence 1357888999999999998655321 11 13444444 368876654
No 106
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=96.69 E-value=0.0024 Score=56.94 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=38.3
Q ss_pred CCeEEEeccCCCCCCCCCceeEEEecCccCCCC---hHHHHHHHHHhccCCcEEEEEe
Q 022285 41 PQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIYK 95 (299)
Q Consensus 41 ~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~ 95 (299)
.+|.|...++.+.+.+.+.||+|++.+++.++. ...+++.+++.|+|||.|++..
T Consensus 118 ~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 118 KMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred CceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 478899888888445678999999999999998 3789999999999999999764
No 107
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=96.68 E-value=0.0046 Score=58.00 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=53.3
Q ss_pred cChHHHHHHHHHHHHHHhhhc--CCCeEEEeccCCCCCCCCCceeEEEecCccCCCChHHHHHHHHHhccCCcEEEEEec
Q 022285 19 LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK 96 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~--~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~ 96 (299)
+...|+++.|+..|++++... ..++.+..++. .++.++.||+|+++...+. ...++.++.++|||||.|++...
T Consensus 185 V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~--~~~~~~~fDlVvan~~~~~--l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 185 VVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL--EQPIEGKADVIVANILAEV--IKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc--ccccCCCceEEEEecCHHH--HHHHHHHHHHHcCCCcEEEEEeC
Confidence 446688889999988776542 23455555553 2344679999999764322 35688999999999999998765
Q ss_pred C
Q 022285 97 L 97 (299)
Q Consensus 97 ~ 97 (299)
.
T Consensus 261 ~ 261 (288)
T TIGR00406 261 L 261 (288)
T ss_pred c
Confidence 4
No 108
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.61 E-value=0.01 Score=56.42 Aligned_cols=97 Identities=13% Similarity=0.120 Sum_probs=65.2
Q ss_pred ccChHHHHHHHHHHHHHHhhhc--CCCeEEEeccCCCCCCCCCceeEEEecCcc-------------CCCC---------
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSS-------------HELP--------- 73 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~--~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~-------------~~~~--------- 73 (299)
.++..|+++.+++.|++++... ..++.++.+|+.. ++++.+||+|+++-.. ++.|
T Consensus 159 ~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~d 237 (307)
T PRK11805 159 EVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDD 237 (307)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCc
Confidence 4567788999999999887654 2469999999754 2346689999997321 1111
Q ss_pred ----hHHHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCceece
Q 022285 74 ----GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ 124 (299)
Q Consensus 74 ----~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~ 124 (299)
...+++++.+.|+|||.+++..... . ..+...+...||+-.+
T Consensus 238 Gl~~~~~i~~~a~~~L~pgG~l~~E~g~~------~---~~~~~~~~~~~~~~~~ 283 (307)
T PRK11805 238 GLDLVRRILAEAPDYLTEDGVLVVEVGNS------R---VHLEEAYPDVPFTWLE 283 (307)
T ss_pred hHHHHHHHHHHHHHhcCCCCEEEEEECcC------H---HHHHHHHhhCCCEEEE
Confidence 1467888999999999998753221 1 1344455556776543
No 109
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.61 E-value=0.0039 Score=60.70 Aligned_cols=56 Identities=25% Similarity=0.414 Sum_probs=49.8
Q ss_pred CeEEEeccCCCCCCCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEEEEecC
Q 022285 42 QIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKL 97 (299)
Q Consensus 42 ~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~ 97 (299)
...++.+++.+.||+++.||.+.+.-+..|.+ ...+++|++|++||||.+...++.
T Consensus 161 k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 161 KCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred hcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence 33448889999999999999999999999988 789999999999999999987664
No 110
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=96.58 E-value=0.0094 Score=55.11 Aligned_cols=99 Identities=17% Similarity=0.296 Sum_probs=73.3
Q ss_pred CccChHHHHHHHHHHHHHHhhhc--CCCeEEEeccCCCCCCCCCceeEEEecCccCCCChHHHHHHHHHhccCCcEEEEE
Q 022285 17 KILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIY 94 (299)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~~--~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~ 94 (299)
..|+.-|..++..+.|++|++.. ..++.+..+|+.+.-+++ .||+|+.-..- +-.++..+.++|||||.+.+.
T Consensus 120 G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~LDmp~----PW~~le~~~~~Lkpgg~~~~y 194 (256)
T COG2519 120 GHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVFLDLPD----PWNVLEHVSDALKPGGVVVVY 194 (256)
T ss_pred ceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEEEcCCC----hHHHHHHHHHHhCCCcEEEEE
Confidence 44555678889999999888663 344888899998876655 89999875422 557899999999999999988
Q ss_pred ecCCCCccchHHHHHHHHHHHHHCCceeceeec
Q 022285 95 KKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQ 127 (299)
Q Consensus 95 ~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~~ 127 (299)
.+.- + ..+.....|...||++++..+
T Consensus 195 ~P~v------e-Qv~kt~~~l~~~g~~~ie~~E 220 (256)
T COG2519 195 SPTV------E-QVEKTVEALRERGFVDIEAVE 220 (256)
T ss_pred cCCH------H-HHHHHHHHHHhcCccchhhhe
Confidence 7653 1 122334566777999987654
No 111
>PRK00811 spermidine synthase; Provisional
Probab=96.57 E-value=0.0039 Score=58.40 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=56.7
Q ss_pred cChHHHHHHHHHHHHHHhhh------cCCCeEEEeccCCCC-CCCCCceeEEEecCccCCCC-----hHHHHHHHHHhcc
Q 022285 19 LPVSAVLNAIRDLGDEAVEQ------CDPQIITQASSLSQL-PVESFSIDTVLSISSSHELP-----GDQLLEEISRVLK 86 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~------~~~~i~~~~gd~~~L-p~~~~sfD~Vls~~~~~~~~-----~~~~L~ei~RvLK 86 (299)
++..|+.+.|.+.|++.... ..+++.++.+|+... ...++.||+|++.....+.+ ...+++.+.+.|+
T Consensus 103 V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~ 182 (283)
T PRK00811 103 ITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALK 182 (283)
T ss_pred EEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcC
Confidence 34557778899998876532 267899999998653 33467899999875433322 3678899999999
Q ss_pred CCcEEEEEe
Q 022285 87 PGGTILIYK 95 (299)
Q Consensus 87 PGG~l~i~~ 95 (299)
|||.+++..
T Consensus 183 ~gGvlv~~~ 191 (283)
T PRK00811 183 EDGIFVAQS 191 (283)
T ss_pred CCcEEEEeC
Confidence 999998753
No 112
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.56 E-value=0.0068 Score=56.14 Aligned_cols=79 Identities=11% Similarity=0.138 Sum_probs=57.7
Q ss_pred ccChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCCCCCCceeEEEecCc---c-----------CCCC---------
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISS---S-----------HELP--------- 73 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~---~-----------~~~~--------- 73 (299)
.++..|+++.+++.++++++.. ..++.+..+|+..++.....||+|++... . .+.+
T Consensus 98 ~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~ 177 (264)
T TIGR00446 98 AIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISAL 177 (264)
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHH
Confidence 4556788899999998877654 35788899998877766667999997431 1 0111
Q ss_pred hHHHHHHHHHhccCCcEEEEEec
Q 022285 74 GDQLLEEISRVLKPGGTILIYKK 96 (299)
Q Consensus 74 ~~~~L~ei~RvLKPGG~l~i~~~ 96 (299)
...+|.++.+.|||||+|+...-
T Consensus 178 q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 178 QKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeC
Confidence 13588999999999999986654
No 113
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.54 E-value=0.012 Score=53.20 Aligned_cols=55 Identities=22% Similarity=0.322 Sum_probs=46.5
Q ss_pred CCCeEEEeccCCCCCCCCCceeEEEecCccCCCC---hHHHHHHHHHhccCC--cEEEEEecC
Q 022285 40 DPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPG--GTILIYKKL 97 (299)
Q Consensus 40 ~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPG--G~l~i~~~~ 97 (299)
..++.++.+|+- -|+|. +|+|+....+|.++ ...+|+.++++|+|| |+|+|.+..
T Consensus 142 ~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 142 ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred ccccccccccHH-hhhcc--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 578999999997 56666 99999999999887 367999999999999 999999875
No 114
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.54 E-value=0.0063 Score=60.22 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=57.8
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCC--CCCCceeEEEecCcc------------CCCC-h--------
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSISSS------------HELP-G-------- 74 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp--~~~~sfD~Vls~~~~------------~~~~-~-------- 74 (299)
.++..|.++.|++.+++++.....++.++.+|+..++ ++.++||.|++.... .|.. .
T Consensus 270 ~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~ 349 (427)
T PRK10901 270 QVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAA 349 (427)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHH
Confidence 3445688889999998887765556788999998764 346789999964321 1211 1
Q ss_pred --HHHHHHHHHhccCCcEEEEEec
Q 022285 75 --DQLLEEISRVLKPGGTILIYKK 96 (299)
Q Consensus 75 --~~~L~ei~RvLKPGG~l~i~~~ 96 (299)
..++.+++++|||||+|++..-
T Consensus 350 ~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 350 LQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeC
Confidence 3689999999999999988764
No 115
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=96.54 E-value=0.0042 Score=58.41 Aligned_cols=91 Identities=12% Similarity=0.207 Sum_probs=71.6
Q ss_pred cccceEEEEec-------------CCccChHHHHHHHHHHHHHHhhhc--CCCeEEEeccCCCCCCCCCceeEEEecCcc
Q 022285 5 KMQSAVLALSE-------------DKILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSS 69 (299)
Q Consensus 5 ~~~~~vLlL~~-------------~~~vt~~dlse~m~~~A~~~~~~~--~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~ 69 (299)
+-|.+||-+-- +..|+..++|+++.+.+++++... ..++++...|...+. +.||.|+|.-.+
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvgmf 147 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVGMF 147 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehhhH
Confidence 45677777632 466778899999999999877554 447888888877664 449999999887
Q ss_pred CCCC---hHHHHHHHHHhccCCcEEEEEecCC
Q 022285 70 HELP---GDQLLEEISRVLKPGGTILIYKKLT 98 (299)
Q Consensus 70 ~~~~---~~~~L~ei~RvLKPGG~l~i~~~~~ 98 (299)
.|+- -..++..++++|+|||.+++.....
T Consensus 148 Ehvg~~~~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 148 EHVGKENYDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred HHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence 7765 4789999999999999999887653
No 116
>PRK03612 spermidine synthase; Provisional
Probab=96.53 E-value=0.0052 Score=62.42 Aligned_cols=100 Identities=16% Similarity=0.205 Sum_probs=68.3
Q ss_pred ccChHHHHHHHHHHHHHH--hhh------cCCCeEEEeccCCCC-CCCCCceeEEEecCccCCCC------hHHHHHHHH
Q 022285 18 ILPVSAVLNAIRDLGDEA--VEQ------CDPQIITQASSLSQL-PVESFSIDTVLSISSSHELP------GDQLLEEIS 82 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~--~~~------~~~~i~~~~gd~~~L-p~~~~sfD~Vls~~~~~~~~------~~~~L~ei~ 82 (299)
.++..|+.++|.+.++++ ... .+++++++.+|+... ...+++||+|++.....+.+ ..++++.+.
T Consensus 323 ~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~ 402 (521)
T PRK03612 323 QVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLK 402 (521)
T ss_pred eEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHH
Confidence 344556778899998872 211 247899999988763 33357899999986543322 357899999
Q ss_pred HhccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCc
Q 022285 83 RVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF 120 (299)
Q Consensus 83 RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGF 120 (299)
+.|||||.++++..... .. ......+.+.+...||
T Consensus 403 ~~L~pgG~lv~~~~~~~--~~-~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 403 RRLAPDGLLVVQSTSPY--FA-PKAFWSIEATLEAAGL 437 (521)
T ss_pred HhcCCCeEEEEecCCcc--cc-hHHHHHHHHHHHHcCC
Confidence 99999999988643211 11 2233467788999999
No 117
>PRK07402 precorrin-6B methylase; Provisional
Probab=96.53 E-value=0.0049 Score=54.15 Aligned_cols=78 Identities=15% Similarity=0.138 Sum_probs=54.3
Q ss_pred CccChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCC-CCCCCCceeEEEecCccCCCChHHHHHHHHHhccCCcEEEEE
Q 022285 17 KILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQ-LPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIY 94 (299)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~-Lp~~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~ 94 (299)
..++..|.++.|++.++++++.. ..+++++.+|+.. ++.-...+|.|+.... .+...++++++++|+|||+|++.
T Consensus 65 ~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~~---~~~~~~l~~~~~~LkpgG~li~~ 141 (196)
T PRK07402 65 GRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEGG---RPIKEILQAVWQYLKPGGRLVAT 141 (196)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEECC---cCHHHHHHHHHHhcCCCeEEEEE
Confidence 34455688899999998876543 3578999888754 3222234677655321 12468899999999999999988
Q ss_pred ecC
Q 022285 95 KKL 97 (299)
Q Consensus 95 ~~~ 97 (299)
...
T Consensus 142 ~~~ 144 (196)
T PRK07402 142 ASS 144 (196)
T ss_pred eec
Confidence 653
No 118
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.49 E-value=0.0022 Score=60.09 Aligned_cols=73 Identities=27% Similarity=0.379 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC----hHHHHHHHHHhccCCcEEEEEec
Q 022285 21 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP----GDQLLEEISRVLKPGGTILIYKK 96 (299)
Q Consensus 21 ~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~----~~~~L~ei~RvLKPGG~l~i~~~ 96 (299)
.-|+....+..|++. +.. ....+|+.++|+.+.+||.+++..++||+. ...+++|+.|+|+|||...|+.+
T Consensus 70 g~D~c~~l~~~ak~~----~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 70 GCDLCTGLLGGAKRS----GGD-NVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred ecchhhhhccccccC----CCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 446666666555431 211 567889999999999999999999999986 36899999999999999988877
Q ss_pred CC
Q 022285 97 LT 98 (299)
Q Consensus 97 ~~ 98 (299)
..
T Consensus 145 a~ 146 (293)
T KOG1331|consen 145 AL 146 (293)
T ss_pred hh
Confidence 53
No 119
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=96.43 E-value=0.015 Score=50.59 Aligned_cols=93 Identities=18% Similarity=0.103 Sum_probs=54.7
Q ss_pred cccceEEEEecCCccChHHHHHHHHHHHHH-Hhh----hcCCCeEEEeccCCCCC--------CCCCceeEEEecCcc--
Q 022285 5 KMQSAVLALSEDKILPVSAVLNAIRDLGDE-AVE----QCDPQIITQASSLSQLP--------VESFSIDTVLSISSS-- 69 (299)
Q Consensus 5 ~~~~~vLlL~~~~~vt~~dlse~m~~~A~~-~~~----~~~~~i~~~~gd~~~Lp--------~~~~sfD~Vls~~~~-- 69 (299)
+.|++||.+-.|+..-...+...+...++- .+. ....++.+..+|+.+.+ ++.++||+|++....
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~ 110 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNI 110 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCC
Confidence 567789988776654222222211110000 000 01246778888876643 457789999986431
Q ss_pred --CCC-C-------hHHHHHHHHHhccCCcEEEEEecC
Q 022285 70 --HEL-P-------GDQLLEEISRVLKPGGTILIYKKL 97 (299)
Q Consensus 70 --~~~-~-------~~~~L~ei~RvLKPGG~l~i~~~~ 97 (299)
+|. . ...++.+++++|+|||++++..+.
T Consensus 111 ~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 111 SGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 121 1 157899999999999999986543
No 120
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=96.43 E-value=0.0024 Score=55.95 Aligned_cols=61 Identities=15% Similarity=0.061 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCeEEEeccCCC-C-CCCCCceeEEEecCccCCCC-hHHHHHHHHHhccC
Q 022285 21 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ-L-PVESFSIDTVLSISSSHELP-GDQLLEEISRVLKP 87 (299)
Q Consensus 21 ~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~-L-p~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKP 87 (299)
..|++++|++.++. .++.++.+++.. + ++++++||+|+++.++||++ +..++++++|++++
T Consensus 41 giD~s~~~i~~a~~------~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 41 GIEIDQDGVLACVA------RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred EEeCCHHHHHHHHH------cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 44666777776643 246778888865 5 47788999999999999987 77899999998775
No 121
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.42 E-value=0.0075 Score=59.81 Aligned_cols=78 Identities=22% Similarity=0.172 Sum_probs=57.8
Q ss_pred cChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCC----CCCCceeEEEecCc------cCCCC--------------
Q 022285 19 LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP----VESFSIDTVLSISS------SHELP-------------- 73 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp----~~~~sfD~Vls~~~------~~~~~-------------- 73 (299)
++..|+++.|+..++++++.. ..++.++.+|+..++ +..++||.|++... +++.+
T Consensus 280 v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l 359 (434)
T PRK14901 280 IWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQEL 359 (434)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHH
Confidence 445588899999998877654 357899999998876 45678999997421 11111
Q ss_pred ---hHHHHHHHHHhccCCcEEEEEec
Q 022285 74 ---GDQLLEEISRVLKPGGTILIYKK 96 (299)
Q Consensus 74 ---~~~~L~ei~RvLKPGG~l~i~~~ 96 (299)
...++.+++++|||||+|+..+-
T Consensus 360 ~~~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 360 APLQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 14679999999999999987753
No 122
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=96.39 E-value=0.011 Score=53.12 Aligned_cols=88 Identities=16% Similarity=0.138 Sum_probs=58.5
Q ss_pred ccccceEEEEecCCccC---------------hHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCCCCCCceeEEEecC
Q 022285 4 GKMQSAVLALSEDKILP---------------VSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSIS 67 (299)
Q Consensus 4 ~~~~~~vLlL~~~~~vt---------------~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp~~~~sfD~Vls~~ 67 (299)
.+.|++||-|-.|+--. ..|..+.+.+.|++++... ..++.++.+|....--+...||.|++..
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~ 149 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTA 149 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESS
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEee
Confidence 35688899987653322 2234477888888887664 4589999999875433456899999988
Q ss_pred ccCCCChHHHHHHHHHhccCCcEEEEEec
Q 022285 68 SSHELPGDQLLEEISRVLKPGGTILIYKK 96 (299)
Q Consensus 68 ~~~~~~~~~~L~ei~RvLKPGG~l~i~~~ 96 (299)
....+| ..+.+.||+||+|++-..
T Consensus 150 a~~~ip-----~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 150 AVPEIP-----EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp BBSS-------HHHHHTEEEEEEEEEEES
T ss_pred ccchHH-----HHHHHhcCCCcEEEEEEc
Confidence 665444 357788999999987543
No 123
>PHA03411 putative methyltransferase; Provisional
Probab=96.37 E-value=0.011 Score=55.41 Aligned_cols=100 Identities=11% Similarity=0.091 Sum_probs=70.2
Q ss_pred CccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC---------------------hH
Q 022285 17 KILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---------------------GD 75 (299)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~---------------------~~ 75 (299)
..++..|+++.|++.++++. +++.++.+|+..+.. ...||+|+++..+++.+ ..
T Consensus 89 ~~V~gVDisp~al~~Ar~n~----~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~ 163 (279)
T PHA03411 89 EKIVCVELNPEFARIGKRLL----PEAEWITSDVFEFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLG 163 (279)
T ss_pred CEEEEEECCHHHHHHHHHhC----cCCEEEECchhhhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHH
Confidence 34556688889999887642 478899999988763 56899999987665532 13
Q ss_pred HHHHHHHHhccCCcEEEEEecCCCC-ccchHHHHHHHHHHHHHCCceec
Q 022285 76 QLLEEISRVLKPGGTILIYKKLTSD-KGDVDKAISALEGKLLLAGFLDA 123 (299)
Q Consensus 76 ~~L~ei~RvLKPGG~l~i~~~~~~~-~g~~~~~~~~l~~~L~laGFv~v 123 (299)
.++..+.++|+|+|.+++.-....- .+.+ ...++++.|..+||+--
T Consensus 164 ~~l~~v~~~L~p~G~~~~~yss~~~y~~sl--~~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 164 QKFADVGYFIVPTGSAGFAYSGRPYYDGTM--KSNKYLKWSKQTGLVTY 210 (279)
T ss_pred HHHhhhHheecCCceEEEEEeccccccccC--CHHHHHHHHHhcCcEec
Confidence 5667778999999988776433211 0111 13478899999999854
No 124
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.25 E-value=0.0086 Score=59.47 Aligned_cols=80 Identities=13% Similarity=0.132 Sum_probs=58.7
Q ss_pred ccChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCC-CCCCceeEEEecCc---cCCC---C----------------
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP-VESFSIDTVLSISS---SHEL---P---------------- 73 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp-~~~~sfD~Vls~~~---~~~~---~---------------- 73 (299)
.++..|+++.+++.++++++.. ..++.+..+|+..++ +.+++||.|++... +..+ +
T Consensus 264 ~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~ 343 (431)
T PRK14903 264 KILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSE 343 (431)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHH
Confidence 4556688899999998887664 346889999998876 55678999997421 1111 0
Q ss_pred -hHHHHHHHHHhccCCcEEEEEecC
Q 022285 74 -GDQLLEEISRVLKPGGTILIYKKL 97 (299)
Q Consensus 74 -~~~~L~ei~RvLKPGG~l~i~~~~ 97 (299)
...+|.++++.|||||.++...-.
T Consensus 344 ~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 344 IQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEECC
Confidence 145688999999999999877654
No 125
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=96.23 E-value=0.012 Score=58.31 Aligned_cols=80 Identities=18% Similarity=0.135 Sum_probs=55.5
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCe--EEEeccCCCCCC--CCCceeEEEecC-----c-cCCCC--------------
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQCDPQI--ITQASSLSQLPV--ESFSIDTVLSIS-----S-SHELP-------------- 73 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~~~i--~~~~gd~~~Lp~--~~~sfD~Vls~~-----~-~~~~~-------------- 73 (299)
.++..|.++.|++.+++++++....+ .+..+|...+++ +.++||.|++.. . ++..+
T Consensus 264 ~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l 343 (426)
T TIGR00563 264 QVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAEL 343 (426)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHH
Confidence 45566888999999988876653333 336667665554 567899999642 1 22111
Q ss_pred ---hHHHHHHHHHhccCCcEEEEEecC
Q 022285 74 ---GDQLLEEISRVLKPGGTILIYKKL 97 (299)
Q Consensus 74 ---~~~~L~ei~RvLKPGG~l~i~~~~ 97 (299)
...+|.+++++|||||+|++.+-.
T Consensus 344 ~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 344 AELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 146899999999999999988654
No 126
>PRK04457 spermidine synthase; Provisional
Probab=96.20 E-value=0.012 Score=54.50 Aligned_cols=80 Identities=9% Similarity=0.084 Sum_probs=56.7
Q ss_pred ccChHHHHHHHHHHHHHHhhh--cCCCeEEEeccCCCC-CCCCCceeEEEecCc-cCCC----ChHHHHHHHHHhccCCc
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQ--CDPQIITQASSLSQL-PVESFSIDTVLSISS-SHEL----PGDQLLEEISRVLKPGG 89 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~--~~~~i~~~~gd~~~L-p~~~~sfD~Vls~~~-~~~~----~~~~~L~ei~RvLKPGG 89 (299)
.++..|+.++|++.|++.... ..+++.++.+|+... .-...+||+|++... .... ....+++++.+.|+|||
T Consensus 92 ~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgG 171 (262)
T PRK04457 92 RQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDG 171 (262)
T ss_pred eEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCc
Confidence 345567778999999876533 247899999997543 222468999997531 1111 23689999999999999
Q ss_pred EEEEEecC
Q 022285 90 TILIYKKL 97 (299)
Q Consensus 90 ~l~i~~~~ 97 (299)
.|++..+.
T Consensus 172 vlvin~~~ 179 (262)
T PRK04457 172 IFVVNLWS 179 (262)
T ss_pred EEEEEcCC
Confidence 99986553
No 127
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.022 Score=51.35 Aligned_cols=87 Identities=18% Similarity=0.232 Sum_probs=62.6
Q ss_pred cccceEEEEecCCc------------cChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCCCCCCceeEEEecCccCC
Q 022285 5 KMQSAVLALSEDKI------------LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHE 71 (299)
Q Consensus 5 ~~~~~vLlL~~~~~------------vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~ 71 (299)
+.|++||-+-.|+- |...|..+++.+.|+++++.. +.|+.++++|...-=-+...||.|+...+.-.
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~ 150 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPE 150 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeeccCC
Confidence 45678888865532 223355567788888888776 66899999999754223478999999887666
Q ss_pred CChHHHHHHHHHhccCCcEEEEEec
Q 022285 72 LPGDQLLEEISRVLKPGGTILIYKK 96 (299)
Q Consensus 72 ~~~~~~L~ei~RvLKPGG~l~i~~~ 96 (299)
+| ..+.+-|||||++++-.-
T Consensus 151 vP-----~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 151 VP-----EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CC-----HHHHHhcccCCEEEEEEc
Confidence 66 246788999999997664
No 128
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.13 E-value=0.013 Score=58.38 Aligned_cols=79 Identities=14% Similarity=0.067 Sum_probs=58.7
Q ss_pred ccChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCCCCCCceeEEEecC-----cc-------CCCC-----------
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSIS-----SS-------HELP----------- 73 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp~~~~sfD~Vls~~-----~~-------~~~~----------- 73 (299)
.++..|+++.|++.+++++... ..++.++.+|+..++ ++++||+|+.-. .. .|..
T Consensus 277 ~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~ 355 (445)
T PRK14904 277 QITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGL 355 (445)
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHH
Confidence 4567789999999998877654 347899999998875 567899999631 10 1111
Q ss_pred hHHHHHHHHHhccCCcEEEEEecC
Q 022285 74 GDQLLEEISRVLKPGGTILIYKKL 97 (299)
Q Consensus 74 ~~~~L~ei~RvLKPGG~l~i~~~~ 97 (299)
...+|.++++.|||||+|++.+-.
T Consensus 356 q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 356 QAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred HHHHHHHHHHhcCCCcEEEEEeCC
Confidence 125899999999999999987754
No 129
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=96.13 E-value=0.029 Score=51.83 Aligned_cols=94 Identities=16% Similarity=0.254 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHhhhc--CCCeEEEeccCCCCCCC---CCceeEEEecCccCCCChHHHHHHHHHhc-cCCcEEEEEec
Q 022285 23 AVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVE---SFSIDTVLSISSSHELPGDQLLEEISRVL-KPGGTILIYKK 96 (299)
Q Consensus 23 dlse~m~~~A~~~~~~~--~~~i~~~~gd~~~Lp~~---~~sfD~Vls~~~~~~~~~~~~L~ei~RvL-KPGG~l~i~~~ 96 (299)
|+.++..+.|+++.+.. ..++.+...|+..-.|+ ++.||.|+.-... +-.++..+.++| ||||++.+..+
T Consensus 72 E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~----Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 72 EFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAVFLDLPD----PWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp ESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEEEEESSS----GGGGHHHHHHHE-EEEEEEEEEES
T ss_pred ccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEEEEeCCC----HHHHHHHHHHHHhcCCceEEEECC
Confidence 56678888888877654 46899999998754453 3679999886533 346788999999 99999998876
Q ss_pred CCCCccchHHHHHHHHHHHHHCCceeceeec
Q 022285 97 LTSDKGDVDKAISALEGKLLLAGFLDAQRIQ 127 (299)
Q Consensus 97 ~~~~~g~~~~~~~~l~~~L~laGFv~v~~~~ 127 (299)
. +. ..+.....|...||.+++..+
T Consensus 148 ~------ie-Qv~~~~~~L~~~gf~~i~~~E 171 (247)
T PF08704_consen 148 C------IE-QVQKTVEALREHGFTDIETVE 171 (247)
T ss_dssp S------HH-HHHHHHHHHHHTTEEEEEEEE
T ss_pred C------HH-HHHHHHHHHHHCCCeeeEEEE
Confidence 4 22 223455678889999987654
No 130
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.10 E-value=0.013 Score=58.19 Aligned_cols=78 Identities=17% Similarity=0.145 Sum_probs=55.4
Q ss_pred ccChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCC--CCCCceeEEEecCccC------------CCC---------
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP--VESFSIDTVLSISSSH------------ELP--------- 73 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp--~~~~sfD~Vls~~~~~------------~~~--------- 73 (299)
.++..|+++.+++.++++++.. ..++.++.+|+..++ ++ ++||+|++..... |..
T Consensus 277 ~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~ 355 (444)
T PRK14902 277 KVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQ 355 (444)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHH
Confidence 3445677788998888877654 346899999998763 33 7899999754211 100
Q ss_pred --hHHHHHHHHHhccCCcEEEEEec
Q 022285 74 --GDQLLEEISRVLKPGGTILIYKK 96 (299)
Q Consensus 74 --~~~~L~ei~RvLKPGG~l~i~~~ 96 (299)
...++.+++++|||||+|+...-
T Consensus 356 ~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 356 EIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 13579999999999999986643
No 131
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=96.03 E-value=0.038 Score=50.88 Aligned_cols=95 Identities=14% Similarity=0.143 Sum_probs=63.0
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCC-CC-CCCceeEEEecCccCC------CC----------------
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-PV-ESFSIDTVLSISSSHE------LP---------------- 73 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~L-p~-~~~sfD~Vls~~~~~~------~~---------------- 73 (299)
.++..|+++.+++.|++++.... +.+..+|+.+. +- ....||+|+++..... .+
T Consensus 112 ~v~~vDis~~al~~A~~N~~~~~--~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~ 189 (251)
T TIGR03704 112 ELHAADIDPAAVRCARRNLADAG--GTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGA 189 (251)
T ss_pred EEEEEECCHHHHHHHHHHHHHcC--CEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCC
Confidence 35566888999999988765432 47788887642 21 1357999999864321 00
Q ss_pred -----hHHHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcee
Q 022285 74 -----GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD 122 (299)
Q Consensus 74 -----~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~ 122 (299)
...++..+.+.|||||.|++..... ...++...+...||..
T Consensus 190 dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~--------~~~~v~~~l~~~g~~~ 235 (251)
T TIGR03704 190 DGLDVLRRVAAGAPDWLAPGGHLLVETSER--------QAPLAVEAFARAGLIA 235 (251)
T ss_pred cHHHHHHHHHHHHHHhcCCCCEEEEEECcc--------hHHHHHHHHHHCCCCc
Confidence 1366777789999999999765422 1125667778889864
No 132
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.03 E-value=0.037 Score=53.40 Aligned_cols=99 Identities=20% Similarity=0.164 Sum_probs=73.9
Q ss_pred CCccChHHHHHHHHHHHHHHhhhc-CCCeEEEec-cCCCCCCCCCceeEEEecCcc------CCC--C--hHHHHHHHHH
Q 022285 16 DKILPVSAVLNAIRDLGDEAVEQC-DPQIITQAS-SLSQLPVESFSIDTVLSISSS------HEL--P--GDQLLEEISR 83 (299)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~~~-~~~i~~~~g-d~~~Lp~~~~sfD~Vls~~~~------~~~--~--~~~~L~ei~R 83 (299)
|+.+-..|+.+.|..-|+.|++.- .....+... |+..+||++++||.|++-... .-. . -..+++.+++
T Consensus 219 G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~e 298 (347)
T COG1041 219 GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASE 298 (347)
T ss_pred CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHH
Confidence 455556799999999999888764 245545544 999999999999999986431 111 1 3678999999
Q ss_pred hccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCceeceee
Q 022285 84 VLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI 126 (299)
Q Consensus 84 vLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~ 126 (299)
+||+||+++++.+. .....+..+||..++..
T Consensus 299 vLk~gG~~vf~~p~------------~~~~~~~~~~f~v~~~~ 329 (347)
T COG1041 299 VLKPGGRIVFAAPR------------DPRHELEELGFKVLGRF 329 (347)
T ss_pred HhhcCcEEEEecCC------------cchhhHhhcCceEEEEE
Confidence 99999999988762 22356888999877654
No 133
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=95.98 E-value=0.034 Score=51.60 Aligned_cols=89 Identities=15% Similarity=0.181 Sum_probs=59.7
Q ss_pred ccceEEEEecCCc--------------cChHHHHHHHHHHHHHHhhh-----cCCCeEEEeccCCC-CCCCCCceeEEEe
Q 022285 6 MQSAVLALSEDKI--------------LPVSAVLNAIRDLGDEAVEQ-----CDPQIITQASSLSQ-LPVESFSIDTVLS 65 (299)
Q Consensus 6 ~~~~vLlL~~~~~--------------vt~~dlse~m~~~A~~~~~~-----~~~~i~~~~gd~~~-Lp~~~~sfD~Vls 65 (299)
+..+||.|-.|.. ++..|+.+.|.+.+++.... ..+++.+..+|+.. +.-..+.||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 3457888855432 34456667788888765432 14678888877643 2222568999998
Q ss_pred cCccCCCC-----hHHHHHHHHHhccCCcEEEEE
Q 022285 66 ISSSHELP-----GDQLLEEISRVLKPGGTILIY 94 (299)
Q Consensus 66 ~~~~~~~~-----~~~~L~ei~RvLKPGG~l~i~ 94 (299)
.......+ ...+++.+.+.|+|||.+++.
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 65422211 367889999999999999976
No 134
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.97 E-value=0.0015 Score=56.37 Aligned_cols=48 Identities=27% Similarity=0.365 Sum_probs=40.2
Q ss_pred CCCCCCCCCceeEEEecCccCCCC---hHHHHHHHHHhccCCcEEEEEecC
Q 022285 50 LSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIYKKL 97 (299)
Q Consensus 50 ~~~Lp~~~~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~ 97 (299)
....+|.++|.|+|++..++.|+. ...++++.+|+|||||+|-|..+.
T Consensus 38 s~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 38 SNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred hhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 335689999999999988777665 467899999999999999988663
No 135
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.91 E-value=0.028 Score=57.03 Aligned_cols=99 Identities=15% Similarity=0.091 Sum_probs=65.0
Q ss_pred ccChHHHHHHHHHHHHHHhhhc--CCCeEEEeccCCCCCCCCCceeEEEecCccC--------------CCC--------
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSH--------------ELP-------- 73 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~--~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~--------------~~~-------- 73 (299)
.++..|+++.+++.|+.++... ..++.++.+|+.. +++..+||+|+++.... +-|
T Consensus 164 ~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~ 242 (506)
T PRK01544 164 NVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEE 242 (506)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCc
Confidence 3445578899999999876543 3478889888643 34466899999974311 111
Q ss_pred -----hHHHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCceecee
Q 022285 74 -----GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (299)
Q Consensus 74 -----~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~ 125 (299)
...++.++.+.|+|||.|++.. ... ..+.+...+...||..+..
T Consensus 243 dGl~~~~~il~~a~~~L~~gG~l~lEi-g~~-------q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 243 DGLQAYFIIAENAKQFLKPNGKIILEI-GFK-------QEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred cHHHHHHHHHHHHHHhccCCCEEEEEE-CCc-------hHHHHHHHHHhcCCCceEE
Confidence 1245678889999999998743 221 1124556677789976543
No 136
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=95.89 E-value=0.013 Score=53.36 Aligned_cols=82 Identities=11% Similarity=-0.070 Sum_probs=62.8
Q ss_pred cCCccChHHHHHHHHHHHHHHh-----------h--hcCCCeEEEeccCCCCCCC---CCceeEEEecCccCCCC---hH
Q 022285 15 EDKILPVSAVLNAIRDLGDEAV-----------E--QCDPQIITQASSLSQLPVE---SFSIDTVLSISSSHELP---GD 75 (299)
Q Consensus 15 ~~~~vt~~dlse~m~~~A~~~~-----------~--~~~~~i~~~~gd~~~Lp~~---~~sfD~Vls~~~~~~~~---~~ 75 (299)
.|-.|+..|+++.-++.+.+.. . .....+.+.++|+-.++.. ...||+|+=...++.++ ..
T Consensus 64 ~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~ 143 (226)
T PRK13256 64 KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRT 143 (226)
T ss_pred CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHH
Confidence 4667888899998777764311 0 1145889999999998642 25799999888888888 36
Q ss_pred HHHHHHHHhccCCcEEEEEec
Q 022285 76 QLLEEISRVLKPGGTILIYKK 96 (299)
Q Consensus 76 ~~L~ei~RvLKPGG~l~i~~~ 96 (299)
...+.+.++|+|||.+++...
T Consensus 144 ~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 144 NYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred HHHHHHHHHhCCCcEEEEEEE
Confidence 788999999999999977755
No 137
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=95.79 E-value=0.089 Score=47.30 Aligned_cols=41 Identities=32% Similarity=0.581 Sum_probs=35.9
Q ss_pred CCCceeEEEecCccCCCC---hHHHHHHHHHhccCCcEEEEEec
Q 022285 56 ESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIYKK 96 (299)
Q Consensus 56 ~~~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~~ 96 (299)
...+||+|++.+.+|-.+ ...+++.+.++|+|||.|+++-+
T Consensus 99 ~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 99 SPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred CCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 356999999999888776 57899999999999999999855
No 138
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.69 E-value=0.0077 Score=60.45 Aligned_cols=68 Identities=26% Similarity=0.320 Sum_probs=46.1
Q ss_pred CCCCCCCCCceeEEEecCcc-CCCC-hHHHHHHHHHhccCCcEEEEEecCCC--CccchHHHHHHHHHHHHH
Q 022285 50 LSQLPVESFSIDTVLSISSS-HELP-GDQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGKLLL 117 (299)
Q Consensus 50 ~~~Lp~~~~sfD~Vls~~~~-~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~--~~g~~~~~~~~l~~~L~l 117 (299)
-..|||++++||+|.+.-.+ .|.. ...+|-|+-|+|+|||.|++..+.-. +..+....|..+......
T Consensus 172 s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~ 243 (506)
T PF03141_consen 172 SQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKS 243 (506)
T ss_pred cccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHH
Confidence 35899999999999987654 3544 35688899999999999988765422 122233444445444333
No 139
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.59 E-value=0.076 Score=40.59 Aligned_cols=77 Identities=29% Similarity=0.372 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCC-eEEEeccCCC--CCCCC-CceeEEEecCccCCCChHHHHHHHHHhccCCcEEEEEecC
Q 022285 22 SAVLNAIRDLGDEAVEQCDPQ-IITQASSLSQ--LPVES-FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL 97 (299)
Q Consensus 22 ~dlse~m~~~A~~~~~~~~~~-i~~~~gd~~~--Lp~~~-~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~ 97 (299)
.|.+..|+..++......... +.+..++... +++.. ..||++......++......+.++.++|+|+|.+++....
T Consensus 78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 78 VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehhcCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 566776666644332221111 6778887776 88888 5999994444444444578999999999999999988765
Q ss_pred C
Q 022285 98 T 98 (299)
Q Consensus 98 ~ 98 (299)
.
T Consensus 158 ~ 158 (257)
T COG0500 158 R 158 (257)
T ss_pred C
Confidence 4
No 140
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=95.48 E-value=0.038 Score=50.08 Aligned_cols=84 Identities=15% Similarity=0.172 Sum_probs=61.2
Q ss_pred EEeccCCCCCCC---CCceeEEEecCccCCCC-h---HHHHHHHHHhccCCcE-----EEEEecCCCCccchHHHHHHHH
Q 022285 45 TQASSLSQLPVE---SFSIDTVLSISSSHELP-G---DQLLEEISRVLKPGGT-----ILIYKKLTSDKGDVDKAISALE 112 (299)
Q Consensus 45 ~~~gd~~~Lp~~---~~sfD~Vls~~~~~~~~-~---~~~L~ei~RvLKPGG~-----l~i~~~~~~~~g~~~~~~~~l~ 112 (299)
..+.|+-+.|+| ++.||+|.+..++.++| + -+.+..+++.|+|+|. |+|..+..--...---....+.
T Consensus 87 I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~ 166 (219)
T PF11968_consen 87 ILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLR 166 (219)
T ss_pred ceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHH
Confidence 456678887874 67999999999999988 2 4689999999999999 8888765321000000123677
Q ss_pred HHHHHCCceeceeecc
Q 022285 113 GKLLLAGFLDAQRIQL 128 (299)
Q Consensus 113 ~~L~laGFv~v~~~~~ 128 (299)
..+..-||..+.....
T Consensus 167 ~im~~LGf~~~~~~~~ 182 (219)
T PF11968_consen 167 EIMESLGFTRVKYKKS 182 (219)
T ss_pred HHHHhCCcEEEEEEec
Confidence 8899999998876543
No 141
>PLN02366 spermidine synthase
Probab=95.44 E-value=0.022 Score=54.30 Aligned_cols=90 Identities=17% Similarity=0.238 Sum_probs=60.9
Q ss_pred cccceEEEEecCCccC--------------hHHHHHHHHHHHHHHhhh-----cCCCeEEEeccCCCC--CCCCCceeEE
Q 022285 5 KMQSAVLALSEDKILP--------------VSAVLNAIRDLGDEAVEQ-----CDPQIITQASSLSQL--PVESFSIDTV 63 (299)
Q Consensus 5 ~~~~~vLlL~~~~~vt--------------~~dlse~m~~~A~~~~~~-----~~~~i~~~~gd~~~L--p~~~~sfD~V 63 (299)
.+..+||+|-.|...+ +.|+-+.|.+.|++.... .++++.++.+|+... ..+++.||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 3455788876554332 334455788888775432 257899999997432 1235689999
Q ss_pred EecCccCCCC-----hHHHHHHHHHhccCCcEEEEE
Q 022285 64 LSISSSHELP-----GDQLLEEISRVLKPGGTILIY 94 (299)
Q Consensus 64 ls~~~~~~~~-----~~~~L~ei~RvLKPGG~l~i~ 94 (299)
++-....+.+ ...+++.+.+.|+|||.+++.
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 9875433322 357899999999999999765
No 142
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=95.40 E-value=0.039 Score=49.01 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHhhh-cCCCeEEEeccCCC-C--CCCCCceeEEEecCccCCCC---------hHHHHHHHHHhccCC
Q 022285 22 SAVLNAIRDLGDEAVEQ-CDPQIITQASSLSQ-L--PVESFSIDTVLSISSSHELP---------GDQLLEEISRVLKPG 88 (299)
Q Consensus 22 ~dlse~m~~~A~~~~~~-~~~~i~~~~gd~~~-L--p~~~~sfD~Vls~~~~~~~~---------~~~~L~ei~RvLKPG 88 (299)
.|+.......+.+++.. ...|+.++.+|+.. + -++++++|.|+.++.--|.. ...++.+++++|+||
T Consensus 47 iE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~g 126 (195)
T PF02390_consen 47 IEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPG 126 (195)
T ss_dssp EES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEE
T ss_pred EecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCC
Confidence 34555555555544443 46899999999887 3 25679999999998633321 378999999999999
Q ss_pred cEEEEEecCCCCccchHHHHHHHHHHHHH--CCceece
Q 022285 89 GTILIYKKLTSDKGDVDKAISALEGKLLL--AGFLDAQ 124 (299)
Q Consensus 89 G~l~i~~~~~~~~g~~~~~~~~l~~~L~l--aGFv~v~ 124 (299)
|.|.+.+-. ..-...+...+.. .+|..+.
T Consensus 127 G~l~~~TD~-------~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 127 GELYFATDV-------EEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp EEEEEEES--------HHHHHHHHHHHHHHSTTEEEE-
T ss_pred CEEEEEeCC-------HHHHHHHHHHHHhcCcCeEEcc
Confidence 999887632 1122234445555 3777653
No 143
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=95.38 E-value=0.027 Score=52.62 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=45.4
Q ss_pred CCeEEEeccCCCCCCCCCceeEEEecCccCCCC---hHHHHHHHHHhccCCcEEEEEec
Q 022285 41 PQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIYKK 96 (299)
Q Consensus 41 ~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~~ 96 (299)
.+|.|...++..-++..+.||+|+|-+++.+++ ...++..++..|+|||.|++-..
T Consensus 184 ~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 184 KMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred cccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 457777777765553466799999999999988 46899999999999999998643
No 144
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.29 E-value=0.0077 Score=48.90 Aligned_cols=36 Identities=22% Similarity=0.497 Sum_probs=29.6
Q ss_pred ceeEEEecCccCCCC-------hHHHHHHHHHhccCCcEEEEE
Q 022285 59 SIDTVLSISSSHELP-------GDQLLEEISRVLKPGGTILIY 94 (299)
Q Consensus 59 sfD~Vls~~~~~~~~-------~~~~L~ei~RvLKPGG~l~i~ 94 (299)
.||+|++.++..|++ ...+++.+++.|+|||.|++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 499999999888876 246899999999999999875
No 145
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=95.29 E-value=0.089 Score=46.80 Aligned_cols=100 Identities=19% Similarity=0.109 Sum_probs=70.7
Q ss_pred ccChHHHHHHHHHHHHHHhhhc-CC-CeEEEeccCCCCCCCCCceeEEEecC-----ccCC-CC---hHHHHHHHHHhcc
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQC-DP-QIITQASSLSQLPVESFSIDTVLSIS-----SSHE-LP---GDQLLEEISRVLK 86 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~-~~-~i~~~~gd~~~Lp~~~~sfD~Vls~~-----~~~~-~~---~~~~L~ei~RvLK 86 (299)
.++..|.++.....|++-+++. .. .|.|++.|+.+-.+-...||+|+=-- +++. -+ +...+..+-++|+
T Consensus 93 ~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~ 172 (227)
T KOG1271|consen 93 KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLS 172 (227)
T ss_pred CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccC
Confidence 3677889998889988766554 33 39999999998778889999997422 1221 11 2346778999999
Q ss_pred CCcEEEEEecCCCCccchHHHHHHHHHHHHHCCceecee
Q 022285 87 PGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (299)
Q Consensus 87 PGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~ 125 (299)
|||+|+|..=. .+.+++...+.-.||+-...
T Consensus 173 ~~gifvItSCN--------~T~dELv~~f~~~~f~~~~t 203 (227)
T KOG1271|consen 173 PGGIFVITSCN--------FTKDELVEEFENFNFEYLST 203 (227)
T ss_pred CCcEEEEEecC--------ccHHHHHHHHhcCCeEEEEe
Confidence 99999987532 12346777788788876543
No 146
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=95.25 E-value=0.22 Score=44.19 Aligned_cols=92 Identities=13% Similarity=0.040 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCCCCCCceeEEEecCccCCCChHHHHHHHHHhccCCcEEEEEecCC
Q 022285 20 PVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLT 98 (299)
Q Consensus 20 t~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~ 98 (299)
...|-.+++++..++|+++. .+|+..+.+++-..--.-.+||.|+..-. -..+.+++.+...|||||++++.-...
T Consensus 62 ~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg---~~i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 62 IAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG---GNIEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred EEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC---CCHHHHHHHHHHHcCcCCeEEEEeecH
Confidence 34455567777777766554 78999999988754212237999999865 234689999999999999999765432
Q ss_pred CCccchHHHHHHHHHHHHHCCce
Q 022285 99 SDKGDVDKAISALEGKLLLAGFL 121 (299)
Q Consensus 99 ~~~g~~~~~~~~l~~~L~laGFv 121 (299)
. ........+...||.
T Consensus 139 ------E-~~~~a~~~~~~~g~~ 154 (187)
T COG2242 139 ------E-TLAKALEALEQLGGR 154 (187)
T ss_pred ------H-HHHHHHHHHHHcCCc
Confidence 1 122444567778884
No 147
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.07 E-value=0.28 Score=44.76 Aligned_cols=121 Identities=22% Similarity=0.243 Sum_probs=73.7
Q ss_pred ccccceEEEEecCCccC---hHHHHH----------------HHHHHHHHHhhhcCCCeEEEeccCCCC----CCCCCce
Q 022285 4 GKMQSAVLALSEDKILP---VSAVLN----------------AIRDLGDEAVEQCDPQIITQASSLSQL----PVESFSI 60 (299)
Q Consensus 4 ~~~~~~vLlL~~~~~vt---~~dlse----------------~m~~~A~~~~~~~~~~i~~~~gd~~~L----p~~~~sf 60 (299)
.+.|.+||.|-..+.+| +.|++. .++..|++ -+||.-+.+|+..- ++ -+.+
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-----R~NIiPIl~DAr~P~~Y~~l-v~~V 144 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-----RPNIIPILEDARHPEKYRML-VEMV 144 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-----STTEEEEES-TTSGGGGTTT-S--E
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-----CCceeeeeccCCChHHhhcc-cccc
Confidence 46788999997766666 444444 33433333 36888888888632 12 2378
Q ss_pred eEEEecCccCCCChHHHHHHHHHhccCCcEEEEEecCCC--CccchHHHHHHHHHHHHHCCceeceeeccccc
Q 022285 61 DTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGKLLLAGFLDAQRIQLKSV 131 (299)
Q Consensus 61 D~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~--~~g~~~~~~~~l~~~L~laGFv~v~~~~~kp~ 131 (299)
|+|++-.+.. -..+.++......||+||.+++.--..+ ...++...+..-...|...||...+..+..|.
T Consensus 145 DvI~~DVaQp-~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy 216 (229)
T PF01269_consen 145 DVIFQDVAQP-DQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEPY 216 (229)
T ss_dssp EEEEEE-SST-THHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTT
T ss_pred cEEEecCCCh-HHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCCC
Confidence 9999875311 1145677777889999999988753311 11234555666677888899999888777665
No 148
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.01 E-value=0.016 Score=53.11 Aligned_cols=104 Identities=13% Similarity=0.086 Sum_probs=70.1
Q ss_pred ChHHHHHHHHHHHHHHhhhcCCCeEEEeccCC-CCC-CCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEEEEec
Q 022285 20 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLS-QLP-VESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKK 96 (299)
Q Consensus 20 t~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~-~Lp-~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~ 96 (299)
|..|+|+.|+++|..+ ..+.. ..++++. -++ ..+..||+|.+.-++.++- .+.++.-+.+.|+|||.|.++.-
T Consensus 151 tGvDiS~nMl~kA~eK--g~YD~--L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 151 TGVDISENMLAKAHEK--GLYDT--LYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred cCCchhHHHHHHHHhc--cchHH--HHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEec
Confidence 4568999999998753 11111 1223332 122 4578899999998888876 78899999999999999988754
Q ss_pred CCCCcc-----c---hHHHHHHHHHHHHHCCceeceeec
Q 022285 97 LTSDKG-----D---VDKAISALEGKLLLAGFLDAQRIQ 127 (299)
Q Consensus 97 ~~~~~g-----~---~~~~~~~l~~~L~laGFv~v~~~~ 127 (299)
.-...+ + +.+.-+-++..+...||..++..+
T Consensus 227 ~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ 265 (287)
T COG4976 227 TLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIED 265 (287)
T ss_pred ccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeec
Confidence 322222 1 112234567789999999887654
No 149
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=94.74 E-value=0.076 Score=50.34 Aligned_cols=78 Identities=23% Similarity=0.280 Sum_probs=56.5
Q ss_pred CccChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCCCCCCceeEEEecCccCCCC------hHHHHHHHHHhccCCc
Q 022285 17 KILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELP------GDQLLEEISRVLKPGG 89 (299)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~------~~~~L~ei~RvLKPGG 89 (299)
..+|+.|+...-++.|+.+++.- ..+..+..+++. .+..+ +||.|+++-.+|.=. ..+++.+..+.|++||
T Consensus 183 ~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~-~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gG 260 (300)
T COG2813 183 AKLTLVDVNARAVESARKNLAANGVENTEVWASNLY-EPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGG 260 (300)
T ss_pred CeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccc-ccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCC
Confidence 45667788888888898876543 334344444443 34445 999999999887422 2589999999999999
Q ss_pred EEEEEec
Q 022285 90 TILIYKK 96 (299)
Q Consensus 90 ~l~i~~~ 96 (299)
.|+|.-.
T Consensus 261 eL~iVan 267 (300)
T COG2813 261 ELWIVAN 267 (300)
T ss_pred EEEEEEc
Confidence 9988765
No 150
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=94.63 E-value=0.078 Score=49.66 Aligned_cols=88 Identities=17% Similarity=0.159 Sum_probs=58.9
Q ss_pred CCCeEEEeccCCCCCCCC---CceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEEEEecC---CCCc-----cchHHH
Q 022285 40 DPQIITQASSLSQLPVES---FSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKL---TSDK-----GDVDKA 107 (299)
Q Consensus 40 ~~~i~~~~gd~~~Lp~~~---~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~---~~~~-----g~~~~~ 107 (299)
..++....||+..+..++ ++||+|+..+-+-.-+ .-..+..|+++|||||..+=.-+. -... ..+.-.
T Consensus 143 ~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs 222 (270)
T PF07942_consen 143 PSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELS 222 (270)
T ss_pred CCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCC
Confidence 457888899999886666 7999999886333222 457899999999999955422110 0000 112224
Q ss_pred HHHHHHHHHHCCceeceeec
Q 022285 108 ISALEGKLLLAGFLDAQRIQ 127 (299)
Q Consensus 108 ~~~l~~~L~laGFv~v~~~~ 127 (299)
++++.......||..+....
T Consensus 223 ~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 223 LEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred HHHHHHHHHHCCCEEEEEEE
Confidence 67888888999999876543
No 151
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=94.59 E-value=0.043 Score=49.97 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=56.0
Q ss_pred CccChHHHHHHHHHHHHHHhhhc--CCCeEEEeccCCCC-C-----CCCCceeEEEecCccCCCChHHHHHHHHHhccCC
Q 022285 17 KILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQL-P-----VESFSIDTVLSISSSHELPGDQLLEEISRVLKPG 88 (299)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~~--~~~i~~~~gd~~~L-p-----~~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPG 88 (299)
..++..|..+++.+.|++++++. ..++.++.+++... + .+..+||+|+.-..-. .....+.++.+.|+||
T Consensus 94 g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k~--~y~~~~~~~~~ll~~G 171 (234)
T PLN02781 94 GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDADKP--NYVHFHEQLLKLVKVG 171 (234)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCCHH--HHHHHHHHHHHhcCCC
Confidence 34556677888899998877654 45789999988653 1 1246899999864311 1246788999999999
Q ss_pred cEEEEEec
Q 022285 89 GTILIYKK 96 (299)
Q Consensus 89 G~l~i~~~ 96 (299)
|.+++-+.
T Consensus 172 G~ii~dn~ 179 (234)
T PLN02781 172 GIIAFDNT 179 (234)
T ss_pred eEEEEEcC
Confidence 99887553
No 152
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=94.38 E-value=0.1 Score=44.70 Aligned_cols=75 Identities=5% Similarity=-0.019 Sum_probs=54.2
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCChHHHHHHHHHh--ccCCcEEEEEe
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRV--LKPGGTILIYK 95 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~~~~~L~ei~Rv--LKPGG~l~i~~ 95 (299)
.++..|+.+.|...++++... ..++.++.+|+.++++++..||.|+++..++.. ...+..+.+. +.++|.|.+..
T Consensus 37 ~v~~vE~~~~~~~~~~~~~~~-~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~~--~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 37 RVTAIEIDPRLAPRLREKFAA-ADNLTVIHGDALKFDLPKLQPYKVVGNLPYNIS--TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred eEEEEECCHHHHHHHHHHhcc-CCCEEEEECchhcCCccccCCCEEEECCCcccH--HHHHHHHHhcCCCcceEEEEEEH
Confidence 455667788888888876543 568999999999999888889999998766532 3444555443 44778887664
No 153
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=94.33 E-value=0.24 Score=46.09 Aligned_cols=68 Identities=26% Similarity=0.253 Sum_probs=46.4
Q ss_pred ceeEEEecCccCCCC-----hHHHHHHHHHhccCCcEEEEEecCCCC---ccc-----hHHHHHHHHHHHHHCCceecee
Q 022285 59 SIDTVLSISSSHELP-----GDQLLEEISRVLKPGGTILIYKKLTSD---KGD-----VDKAISALEGKLLLAGFLDAQR 125 (299)
Q Consensus 59 sfD~Vls~~~~~~~~-----~~~~L~ei~RvLKPGG~l~i~~~~~~~---~g~-----~~~~~~~l~~~L~laGFv~v~~ 125 (299)
.||+|++.+.+...- -..+++.+.++|||||.|++......+ .|. +.-..+.++..|..+||.....
T Consensus 158 ~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~ 237 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDL 237 (256)
T ss_dssp SEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEE
T ss_pred chhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEEec
Confidence 599999988643221 257899999999999999988665443 121 1112356778899999976554
Q ss_pred e
Q 022285 126 I 126 (299)
Q Consensus 126 ~ 126 (299)
.
T Consensus 238 ~ 238 (256)
T PF01234_consen 238 E 238 (256)
T ss_dssp E
T ss_pred c
Confidence 4
No 154
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=94.33 E-value=0.039 Score=49.14 Aligned_cols=91 Identities=20% Similarity=0.151 Sum_probs=57.0
Q ss_pred cccccceEEEEecCCccChHHHHHHHHHHH------HHHhhh-cCCCeEEEeccCC-CC-CCCCCceeEEEecCccCCCC
Q 022285 3 TGKMQSAVLALSEDKILPVSAVLNAIRDLG------DEAVEQ-CDPQIITQASSLS-QL-PVESFSIDTVLSISSSHELP 73 (299)
Q Consensus 3 ~~~~~~~vLlL~~~~~vt~~dlse~m~~~A------~~~~~~-~~~~i~~~~gd~~-~L-p~~~~sfD~Vls~~~~~~~~ 73 (299)
.++.|++||-|-=|.-.-+.-+.+...-.+ ..++.+ ....+.++++|++ .| .|++.+||.|+.+.++..+.
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~ 89 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR 89 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence 356688888886554332322222211000 011111 1346778888887 44 48999999999999988877
Q ss_pred -hHHHHHHHHHhccCCcEEEEEec
Q 022285 74 -GDQLLEEISRVLKPGGTILIYKK 96 (299)
Q Consensus 74 -~~~~L~ei~RvLKPGG~l~i~~~ 96 (299)
+..+|.|+.|+ |...+|.-+
T Consensus 90 ~P~~vL~EmlRV---gr~~IVsFP 110 (193)
T PF07021_consen 90 RPDEVLEEMLRV---GRRAIVSFP 110 (193)
T ss_pred HHHHHHHHHHHh---cCeEEEEec
Confidence 88999999888 445555543
No 155
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=94.31 E-value=0.11 Score=45.31 Aligned_cols=93 Identities=23% Similarity=0.236 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHHhhhc--CCCeEEEeccCCCCCCCCCceeEEEecCccCC-CC--------hHHHHHHHHHhccCCc
Q 022285 21 VSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHE-LP--------GDQLLEEISRVLKPGG 89 (299)
Q Consensus 21 ~~dlse~m~~~A~~~~~~~--~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~-~~--------~~~~L~ei~RvLKPGG 89 (299)
..|+.+.+++.|+.++... ...+.+.+.|+..+|+.++++|+|+++..+-. +. -..+++++.|+|++ .
T Consensus 66 g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~ 144 (179)
T PF01170_consen 66 GSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-R 144 (179)
T ss_dssp EEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-C
T ss_pred ecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-C
Confidence 5577788888888877653 45788999999999988899999999875332 11 14678889999999 4
Q ss_pred EEEEEecCCCCccchHHHHHHHHHHHHHCCceecee
Q 022285 90 TILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (299)
Q Consensus 90 ~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~ 125 (299)
.+++..... .+...+...++.....
T Consensus 145 ~v~l~~~~~-----------~~~~~~~~~~~~~~~~ 169 (179)
T PF01170_consen 145 AVFLTTSNR-----------ELEKALGLKGWRKRKL 169 (179)
T ss_dssp EEEEEESCC-----------CHHHHHTSTTSEEEEE
T ss_pred EEEEEECCH-----------HHHHHhcchhhceEEE
Confidence 444443321 3445566666665543
No 156
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=94.20 E-value=0.21 Score=44.90 Aligned_cols=86 Identities=19% Similarity=0.253 Sum_probs=54.6
Q ss_pred CCCeEEEeccCCCCCCCCCceeEEEecCccCC-----CC---hHHHHHHHHHhccCCcEEEEEecCCCC-ccchHH----
Q 022285 40 DPQIITQASSLSQLPVESFSIDTVLSISSSHE-----LP---GDQLLEEISRVLKPGGTILIYKKLTSD-KGDVDK---- 106 (299)
Q Consensus 40 ~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~-----~~---~~~~L~ei~RvLKPGG~l~i~~~~~~~-~g~~~~---- 106 (299)
..|++.+-.....++ +.+..|++......|- ++ ...+..++++.|||||.+.+.++.... .+..+.
T Consensus 104 ~aN~e~~~~~~~A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ 182 (238)
T COG4798 104 YANVEVIGKPLVALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLH 182 (238)
T ss_pred hhhhhhhCCcccccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhc
Confidence 345555555555666 5566777766443221 22 478999999999999999999886321 111111
Q ss_pred --HHHHHHHHHHHCCceeceee
Q 022285 107 --AISALEGKLLLAGFLDAQRI 126 (299)
Q Consensus 107 --~~~~l~~~L~laGFv~v~~~ 126 (299)
....+..+...+||+-..+.
T Consensus 183 ri~~a~V~a~veaaGFkl~aeS 204 (238)
T COG4798 183 RIDPAVVIAEVEAAGFKLEAES 204 (238)
T ss_pred ccChHHHHHHHHhhcceeeeee
Confidence 12456788999999865443
No 157
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=93.93 E-value=0.068 Score=51.28 Aligned_cols=83 Identities=13% Similarity=0.069 Sum_probs=56.0
Q ss_pred ecCCccC---hHHHHHHHHHHHHHHhhhc---C----CCeEEEeccC------CCCCCCCCceeEEEecCccCCC-C---
Q 022285 14 SEDKILP---VSAVLNAIRDLGDEAVEQC---D----PQIITQASSL------SQLPVESFSIDTVLSISSSHEL-P--- 73 (299)
Q Consensus 14 ~~~~~vt---~~dlse~m~~~A~~~~~~~---~----~~i~~~~gd~------~~Lp~~~~sfD~Vls~~~~~~~-~--- 73 (299)
|+-+.+. ..|+.+.-+++|+++.... . -.+.|+.+|- +.+++++.+||+|-+-+++|+. .
T Consensus 135 w~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee 214 (389)
T KOG1975|consen 135 WDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEE 214 (389)
T ss_pred hhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHH
Confidence 5544444 5666666666776654321 1 1356666643 2346667779999999998863 3
Q ss_pred -hHHHHHHHHHhccCCcEEEEEec
Q 022285 74 -GDQLLEEISRVLKPGGTILIYKK 96 (299)
Q Consensus 74 -~~~~L~ei~RvLKPGG~l~i~~~ 96 (299)
...+|..+.+.|||||.|+-+.+
T Consensus 215 ~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 215 SARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred HHHHHHHHHHhhcCCCcEEEEecC
Confidence 36789999999999999985544
No 158
>PLN02672 methionine S-methyltransferase
Probab=93.84 E-value=0.33 Score=53.48 Aligned_cols=104 Identities=14% Similarity=0.036 Sum_probs=70.3
Q ss_pred CccChHHHHHHHHHHHHHHhhhc-----------------CCCeEEEeccCCCCCCCC--CceeEEEecCccC-------
Q 022285 17 KILPVSAVLNAIRDLGDEAVEQC-----------------DPQIITQASSLSQLPVES--FSIDTVLSISSSH------- 70 (299)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~~-----------------~~~i~~~~gd~~~Lp~~~--~sfD~Vls~~~~~------- 70 (299)
..++..|+++.+++.|+.++... ..++.++.+|+.+.. .. ..||+|+++-...
T Consensus 143 ~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~-~~~~~~fDlIVSNPPYI~~~e~~~ 221 (1082)
T PLN02672 143 SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC-RDNNIELDRIVGCIPQILNPNPEA 221 (1082)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc-cccCCceEEEEECCCcCCCcchhh
Confidence 45667789999999998876531 146899999987543 32 2699999985311
Q ss_pred -------C------------CC--h-----------HHHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHH-HHHHH
Q 022285 71 -------E------------LP--G-----------DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALE-GKLLL 117 (299)
Q Consensus 71 -------~------------~~--~-----------~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~-~~L~l 117 (299)
+ .. . ..++.+..+.|+|||.+++..... .. +.+. +.+..
T Consensus 222 l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~-----q~---~~v~~~l~~~ 293 (1082)
T PLN02672 222 MSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGR-----PG---QAVCERLFER 293 (1082)
T ss_pred cChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc-----HH---HHHHHHHHHH
Confidence 0 00 0 467788889999999988654321 11 2555 46778
Q ss_pred CCceeceeeccc
Q 022285 118 AGFLDAQRIQLK 129 (299)
Q Consensus 118 aGFv~v~~~~~k 129 (299)
.||..+...+.+
T Consensus 294 ~gf~~~~~~~~~ 305 (1082)
T PLN02672 294 RGFRITKLWQTK 305 (1082)
T ss_pred CCCCeeEEeeeh
Confidence 999987665544
No 159
>PRK00536 speE spermidine synthase; Provisional
Probab=93.68 E-value=0.2 Score=46.71 Aligned_cols=98 Identities=13% Similarity=0.087 Sum_probs=58.4
Q ss_pred CCccChHHHHHHHHHHHHHHh-----hhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCChHHHHHHHHHhccCCcE
Q 022285 16 DKILPVSAVLNAIRDLGDEAV-----EQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGT 90 (299)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~-----~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~ 90 (299)
+..+++.|+=+++++.+++.. .-.++++..+.. +.+ -..++||+|+.-.. .+..+++.+.|+|+|||.
T Consensus 94 ~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvDs~----~~~~fy~~~~~~L~~~Gi 166 (262)
T PRK00536 94 DTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICLQE----PDIHKIDGLKRMLKEDGV 166 (262)
T ss_pred CCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEcCC----CChHHHHHHHHhcCCCcE
Confidence 334555555556777766532 123788887752 211 12468999998642 346788999999999999
Q ss_pred EEEEecCCCCccchHHHHHHHHHHHHHCCceece
Q 022285 91 ILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ 124 (299)
Q Consensus 91 l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~ 124 (299)
++.+....-- . ......+.+.+.. .|..+.
T Consensus 167 ~v~Qs~sp~~--~-~~~~~~i~~~l~~-~F~~v~ 196 (262)
T PRK00536 167 FISVAKHPLL--E-HVSMQNALKNMGD-FFSIAM 196 (262)
T ss_pred EEECCCCccc--C-HHHHHHHHHHHHh-hCCceE
Confidence 9976422110 0 1223345555555 676554
No 160
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=93.63 E-value=0.08 Score=48.09 Aligned_cols=81 Identities=20% Similarity=0.201 Sum_probs=58.6
Q ss_pred CCccChHHHHHHHHHHHHHHhhhc--CCCeEEEe-ccCCCC-C-CCCCceeEEEecCccCCCChHHHHHHHHHhccCCcE
Q 022285 16 DKILPVSAVLNAIRDLGDEAVEQC--DPQIITQA-SSLSQL-P-VESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGT 90 (299)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~~~--~~~i~~~~-gd~~~L-p-~~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~ 90 (299)
.+.++..|.-+++.+.|+++.++. ...++.+. +|.... . +...+||+|+.-..-.. -..++..+.+.|+|||.
T Consensus 84 ~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFIDadK~~--yp~~le~~~~lLr~GGl 161 (219)
T COG4122 84 DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFIDADKAD--YPEYLERALPLLRPGGL 161 (219)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEeCChhh--CHHHHHHHHHHhCCCcE
Confidence 345677788899999999887654 44577777 344322 2 45789999998653222 24789999999999999
Q ss_pred EEEEecCC
Q 022285 91 ILIYKKLT 98 (299)
Q Consensus 91 l~i~~~~~ 98 (299)
+++-+...
T Consensus 162 iv~DNvl~ 169 (219)
T COG4122 162 IVADNVLF 169 (219)
T ss_pred EEEeeccc
Confidence 99877543
No 161
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=93.61 E-value=0.27 Score=44.47 Aligned_cols=108 Identities=18% Similarity=0.216 Sum_probs=66.0
Q ss_pred cCCccChHHHHHHHHHHHHH--Hhhh-----------cCCCeEEEeccCCCCCCCC-CceeEEEecCccCCCC---hHHH
Q 022285 15 EDKILPVSAVLNAIRDLGDE--AVEQ-----------CDPQIITQASSLSQLPVES-FSIDTVLSISSSHELP---GDQL 77 (299)
Q Consensus 15 ~~~~vt~~dlse~m~~~A~~--~~~~-----------~~~~i~~~~gd~~~Lp~~~-~sfD~Vls~~~~~~~~---~~~~ 77 (299)
.|-.|+..|+++.-++.+.+ ++.. ...+|.+.++|+-+++-.. +.||+|+=...++-++ ....
T Consensus 58 ~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Y 137 (218)
T PF05724_consen 58 QGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERY 137 (218)
T ss_dssp TTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHH
T ss_pred CCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHH
Confidence 35567788999988887632 2200 1346789999998887444 3799999777777776 3678
Q ss_pred HHHHHHhccCCcEEEE--EecCCCC-ccchHHH-HHHHHHHHHHCCceec
Q 022285 78 LEEISRVLKPGGTILI--YKKLTSD-KGDVDKA-ISALEGKLLLAGFLDA 123 (299)
Q Consensus 78 L~ei~RvLKPGG~l~i--~~~~~~~-~g~~~~~-~~~l~~~L~laGFv~v 123 (299)
.+.+.++|+|||++++ .+..... .|++-.. .+++. .+.-.+|...
T Consensus 138 a~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~-~l~~~~f~i~ 186 (218)
T PF05724_consen 138 AQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVR-ELFGPGFEIE 186 (218)
T ss_dssp HHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHH-HHHTTTEEEE
T ss_pred HHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHH-HHhcCCcEEE
Confidence 8999999999999433 3333222 2444322 23444 4444788654
No 162
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=93.53 E-value=0.19 Score=45.83 Aligned_cols=74 Identities=12% Similarity=0.094 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHhhhcCC-CeEEEeccCCCC---CCCCCceeEEEecCccCCCC---------hHHHHHHHHHhccCCc
Q 022285 23 AVLNAIRDLGDEAVEQCDP-QIITQASSLSQL---PVESFSIDTVLSISSSHELP---------GDQLLEEISRVLKPGG 89 (299)
Q Consensus 23 dlse~m~~~A~~~~~~~~~-~i~~~~gd~~~L---p~~~~sfD~Vls~~~~~~~~---------~~~~L~ei~RvLKPGG 89 (299)
|+....+..+.+++....- |+.....|+..+ =+++++.|-|+.++.--|.. ...+++++.|+|||||
T Consensus 79 Ei~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG 158 (227)
T COG0220 79 EIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGG 158 (227)
T ss_pred EEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCC
Confidence 3344444444444544444 999998888755 24456999999999643321 3789999999999999
Q ss_pred EEEEEec
Q 022285 90 TILIYKK 96 (299)
Q Consensus 90 ~l~i~~~ 96 (299)
.|.+.+-
T Consensus 159 ~l~~aTD 165 (227)
T COG0220 159 VLHFATD 165 (227)
T ss_pred EEEEEec
Confidence 9988753
No 163
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=93.49 E-value=0.45 Score=43.72 Aligned_cols=111 Identities=13% Similarity=0.111 Sum_probs=68.4
Q ss_pred cceEEEEecCC--------------ccChHHHHHHHHHHHHHHhhh-----cCCCeEEEeccCCCC-CCCCC-ceeEEEe
Q 022285 7 QSAVLALSEDK--------------ILPVSAVLNAIRDLGDEAVEQ-----CDPQIITQASSLSQL-PVESF-SIDTVLS 65 (299)
Q Consensus 7 ~~~vLlL~~~~--------------~vt~~dlse~m~~~A~~~~~~-----~~~~i~~~~gd~~~L-p~~~~-sfD~Vls 65 (299)
..+||+|-.|. .+++.|+-+.+.+.|++.... .++++..+.+|+... --... .||+|+.
T Consensus 77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~ 156 (246)
T PF01564_consen 77 PKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIV 156 (246)
T ss_dssp T-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEE
T ss_pred cCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEE
Confidence 45788776543 344567778888888775322 368999999988643 11233 8999998
Q ss_pred cCccCC-----CChHHHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCc
Q 022285 66 ISSSHE-----LPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF 120 (299)
Q Consensus 66 ~~~~~~-----~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGF 120 (299)
-..-.. +-...+++.+.+.|+|||.+++....... -......+.+.+.....
T Consensus 157 D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~---~~~~~~~i~~tl~~~F~ 213 (246)
T PF01564_consen 157 DLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFL---HPELFKSILKTLRSVFP 213 (246)
T ss_dssp ESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTT---THHHHHHHHHHHHTTSS
T ss_pred eCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCccc---chHHHHHHHHHHHHhCC
Confidence 543211 22468999999999999999987632211 11223345555555554
No 164
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=93.33 E-value=0.1 Score=48.35 Aligned_cols=41 Identities=22% Similarity=0.406 Sum_probs=33.9
Q ss_pred CCCCCceeEEEecCccCCCC-------hHHHHHHHHHhccCCcEEEEE
Q 022285 54 PVESFSIDTVLSISSSHELP-------GDQLLEEISRVLKPGGTILIY 94 (299)
Q Consensus 54 p~~~~sfD~Vls~~~~~~~~-------~~~~L~ei~RvLKPGG~l~i~ 94 (299)
.+....||+|++.+...|++ ...+++.|++.|.|||.|++.
T Consensus 161 ~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 161 DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 34577899999998776665 367999999999999999864
No 165
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=93.32 E-value=0.11 Score=48.24 Aligned_cols=38 Identities=26% Similarity=0.488 Sum_probs=33.4
Q ss_pred CCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEEEE
Q 022285 57 SFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIY 94 (299)
Q Consensus 57 ~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~ 94 (299)
+..||+|.+.+.+-... |..+|++|++.|+|+|++++.
T Consensus 149 ~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 149 DFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred CCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 56899999999876655 789999999999999999877
No 166
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.21 E-value=0.21 Score=50.18 Aligned_cols=76 Identities=22% Similarity=0.256 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCC-----------hHHHHHHHHHhccCCc
Q 022285 21 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-----------GDQLLEEISRVLKPGG 89 (299)
Q Consensus 21 ~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~-----------~~~~L~ei~RvLKPGG 89 (299)
-.|.+....+....+.....+-+.+...|+..+.|++++||+|+---.++.+. ....+.+++|+|+|||
T Consensus 76 ~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~g 155 (482)
T KOG2352|consen 76 NIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGG 155 (482)
T ss_pred eccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCC
Confidence 34555544444433323456788999999999999999999999765443221 2456899999999999
Q ss_pred EEEEEec
Q 022285 90 TILIYKK 96 (299)
Q Consensus 90 ~l~i~~~ 96 (299)
+++....
T Consensus 156 k~~svtl 162 (482)
T KOG2352|consen 156 KYISVTL 162 (482)
T ss_pred EEEEEEe
Confidence 9977665
No 167
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.05 E-value=0.3 Score=44.32 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHHhhhc-----------CCCeEEEeccCCCCCCCCCceeEEEecCccCCCChHHHHHHHHHhccCCc
Q 022285 21 VSAVLNAIRDLGDEAVEQC-----------DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGG 89 (299)
Q Consensus 21 ~~dlse~m~~~A~~~~~~~-----------~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG 89 (299)
..|.-+++.+.+.+++.+. ..++.++++|....--+.+.||.|++..... .+.+++...|+|||
T Consensus 113 GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~YDaIhvGAaa~-----~~pq~l~dqL~~gG 187 (237)
T KOG1661|consen 113 GIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPYDAIHVGAAAS-----ELPQELLDQLKPGG 187 (237)
T ss_pred chhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCcceEEEccCcc-----ccHHHHHHhhccCC
Confidence 4556666666666555332 3578889999998877788999999987543 45678889999999
Q ss_pred EEEEEec
Q 022285 90 TILIYKK 96 (299)
Q Consensus 90 ~l~i~~~ 96 (299)
+++|-..
T Consensus 188 rllip~~ 194 (237)
T KOG1661|consen 188 RLLIPVG 194 (237)
T ss_pred eEEEeec
Confidence 9997643
No 168
>PLN02823 spermine synthase
Probab=92.68 E-value=0.16 Score=48.98 Aligned_cols=76 Identities=13% Similarity=0.212 Sum_probs=53.3
Q ss_pred ChHHHHHHHHHHHHHHhhh-----cCCCeEEEeccCCCC-CCCCCceeEEEecCccC-------CCChHHHHH-HHHHhc
Q 022285 20 PVSAVLNAIRDLGDEAVEQ-----CDPQIITQASSLSQL-PVESFSIDTVLSISSSH-------ELPGDQLLE-EISRVL 85 (299)
Q Consensus 20 t~~dlse~m~~~A~~~~~~-----~~~~i~~~~gd~~~L-p~~~~sfD~Vls~~~~~-------~~~~~~~L~-ei~RvL 85 (299)
+..|+-+++.+.|++.... .++++.++.+|+... .-..+.||+|+.-..-. .+-..++++ .+.+.|
T Consensus 131 ~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L 210 (336)
T PLN02823 131 VMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKL 210 (336)
T ss_pred EEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhc
Confidence 3456777888888875422 258899999988753 34467899999864211 122457887 899999
Q ss_pred cCCcEEEEEe
Q 022285 86 KPGGTILIYK 95 (299)
Q Consensus 86 KPGG~l~i~~ 95 (299)
+|||.+++..
T Consensus 211 ~p~Gvlv~q~ 220 (336)
T PLN02823 211 NPGGIFVTQA 220 (336)
T ss_pred CCCcEEEEec
Confidence 9999987653
No 169
>PRK13699 putative methylase; Provisional
Probab=92.40 E-value=0.3 Score=44.41 Aligned_cols=77 Identities=16% Similarity=0.130 Sum_probs=46.5
Q ss_pred EEeccCCCC--CCCCCceeEEEecCccC----C-----C------C-hHHHHHHHHHhccCCcEEEEEecCCCCccchHH
Q 022285 45 TQASSLSQL--PVESFSIDTVLSISSSH----E-----L------P-GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDK 106 (299)
Q Consensus 45 ~~~gd~~~L--p~~~~sfD~Vls~~~~~----~-----~------~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~ 106 (299)
+..+|..++ .++++++|+|+.--... . + . ....+.|++|+|||||.+++..... ..
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~----~~-- 77 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN----RV-- 77 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc----cH--
Confidence 344554433 46788888888763221 0 0 0 2468899999999999998643211 01
Q ss_pred HHHHHHHHHHHCCceece-eeccc
Q 022285 107 AISALEGKLLLAGFLDAQ-RIQLK 129 (299)
Q Consensus 107 ~~~~l~~~L~laGFv~v~-~~~~k 129 (299)
..+...+..+||...+ ..|.|
T Consensus 78 --~~~~~al~~~GF~l~~~IiW~K 99 (227)
T PRK13699 78 --DRFMAAWKNAGFSVVGHLVFTK 99 (227)
T ss_pred --HHHHHHHHHCCCEEeeEEEEEC
Confidence 1344567788998554 34544
No 170
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=92.38 E-value=0.37 Score=50.85 Aligned_cols=97 Identities=13% Similarity=0.140 Sum_probs=65.1
Q ss_pred cChHHHHHHHHHHHHHHhhhc--C-CCeEEEeccCCCC-CCCCCceeEEEecCccCC--------CC----hHHHHHHHH
Q 022285 19 LPVSAVLNAIRDLGDEAVEQC--D-PQIITQASSLSQL-PVESFSIDTVLSISSSHE--------LP----GDQLLEEIS 82 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~--~-~~i~~~~gd~~~L-p~~~~sfD~Vls~~~~~~--------~~----~~~~L~ei~ 82 (299)
|+..|+++.+++.|+++++.. . .++.++.+|+... .-....||+|++.....- +. ...++..+.
T Consensus 564 V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~ 643 (702)
T PRK11783 564 TTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAK 643 (702)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHH
Confidence 677899999999999877542 2 4789999997542 111468999999753210 00 245788899
Q ss_pred HhccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCceec
Q 022285 83 RVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA 123 (299)
Q Consensus 83 RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v 123 (299)
++|+|||.|++...... +. .....+..+||...
T Consensus 644 ~lL~~gG~l~~~~~~~~----~~----~~~~~~~~~g~~~~ 676 (702)
T PRK11783 644 RLLRPGGTLYFSNNKRG----FK----MDEEGLAKLGLKAE 676 (702)
T ss_pred HHcCCCCEEEEEeCCcc----CC----hhHHHHHhCCCeEE
Confidence 99999999987653321 11 12455677888643
No 171
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=92.37 E-value=0.7 Score=43.94 Aligned_cols=61 Identities=21% Similarity=0.321 Sum_probs=44.3
Q ss_pred CceeEEEecCccCCCChHHHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCceeceeec
Q 022285 58 FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQ 127 (299)
Q Consensus 58 ~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~~ 127 (299)
..||+|+++-- -. +...+..++.+.|||||+++++-. +......+...+..+||..+...+
T Consensus 228 ~~~DvIVANIL-A~-vl~~La~~~~~~lkpgg~lIlSGI-------l~~q~~~V~~a~~~~gf~v~~~~~ 288 (300)
T COG2264 228 GPFDVIVANIL-AE-VLVELAPDIKRLLKPGGRLILSGI-------LEDQAESVAEAYEQAGFEVVEVLE 288 (300)
T ss_pred CcccEEEehhh-HH-HHHHHHHHHHHHcCCCceEEEEee-------hHhHHHHHHHHHHhCCCeEeEEEe
Confidence 59999999851 11 134788999999999999998743 333334667778899999876544
No 172
>PHA03412 putative methyltransferase; Provisional
Probab=92.12 E-value=0.28 Score=45.17 Aligned_cols=69 Identities=13% Similarity=0.158 Sum_probs=49.6
Q ss_pred CccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCC------------C-hHHHHHHHHH
Q 022285 17 KILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL------------P-GDQLLEEISR 83 (299)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~------------~-~~~~L~ei~R 83 (299)
..++..|+.+.+.++|+++. .++.+..+|+...++ +.+||+|+++-.++.. . ...++..+.|
T Consensus 77 ~~V~aVEID~~Al~~Ar~n~----~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~ 151 (241)
T PHA03412 77 REIVCVELNHTYYKLGKRIV----PEATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQ 151 (241)
T ss_pred cEEEEEECCHHHHHHHHhhc----cCCEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHH
Confidence 34666788888888888653 358889999987765 5689999999654311 1 3458888889
Q ss_pred hccCCcE
Q 022285 84 VLKPGGT 90 (299)
Q Consensus 84 vLKPGG~ 90 (299)
+++||+.
T Consensus 152 Ll~~G~~ 158 (241)
T PHA03412 152 IARQGTF 158 (241)
T ss_pred HcCCCEE
Confidence 7777665
No 173
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=92.07 E-value=0.26 Score=44.96 Aligned_cols=72 Identities=18% Similarity=0.251 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCCeEEEeccCCCC--CCCCCceeEEEecCc-cCCCChHHHHHHHHHhccCCcEEEEEecC
Q 022285 22 SAVLNAIRDLGDEAVEQCDPQIITQASSLSQL--PVESFSIDTVLSISS-SHELPGDQLLEEISRVLKPGGTILIYKKL 97 (299)
Q Consensus 22 ~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~L--p~~~~sfD~Vls~~~-~~~~~~~~~L~ei~RvLKPGG~l~i~~~~ 97 (299)
+++...|+..+= ..-.+|....+.-+.. .+++.+||.|+.-.- -++-....+.+.+.|+|||+|.|...+..
T Consensus 134 p~V~krmr~~gw----~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~ 208 (271)
T KOG1709|consen 134 PDVLKRMRDWGW----REKENVIILEGRWEDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGL 208 (271)
T ss_pred HHHHHHHHhccc----ccccceEEEecchHhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCc
Confidence 466666665542 1234666666643322 256999999998653 22223567888999999999999776543
No 174
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=91.90 E-value=0.45 Score=45.14 Aligned_cols=108 Identities=17% Similarity=0.119 Sum_probs=61.3
Q ss_pred cccceEEEEecCCccC-------------hHHHHHHHHHHHHHHhhh--cCCCeEEEeccCCCCCCCCCceeEEEecCcc
Q 022285 5 KMQSAVLALSEDKILP-------------VSAVLNAIRDLGDEAVEQ--CDPQIITQASSLSQLPVESFSIDTVLSISSS 69 (299)
Q Consensus 5 ~~~~~vLlL~~~~~vt-------------~~dlse~m~~~A~~~~~~--~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~ 69 (299)
+.|.+||-+--|+-+- ..|+-+.....|++++.. ...++.+. ... .+....||+|+++-..
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~--~~~~~~~dlvvANI~~ 235 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSE--DLVEGKFDLVVANILA 235 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTS--CTCCS-EEEEEEES-H
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eec--ccccccCCEEEECCCH
Confidence 4566777775554432 224444555666655432 23344332 222 2335899999998521
Q ss_pred CCCChHHHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCceeceee
Q 022285 70 HELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI 126 (299)
Q Consensus 70 ~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~ 126 (299)
. ....++..+.+.|+|||.|+++-... .....+...+.. ||...+..
T Consensus 236 ~--vL~~l~~~~~~~l~~~G~lIlSGIl~-------~~~~~v~~a~~~-g~~~~~~~ 282 (295)
T PF06325_consen 236 D--VLLELAPDIASLLKPGGYLILSGILE-------EQEDEVIEAYKQ-GFELVEER 282 (295)
T ss_dssp H--HHHHHHHHCHHHEEEEEEEEEEEEEG-------GGHHHHHHHHHT-TEEEEEEE
T ss_pred H--HHHHHHHHHHHhhCCCCEEEEccccH-------HHHHHHHHHHHC-CCEEEEEE
Confidence 1 13467888999999999999874432 222355566654 99876543
No 175
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=91.62 E-value=0.6 Score=44.96 Aligned_cols=77 Identities=19% Similarity=0.097 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHhhh-------c----CCCeEEEeccCCCC----CCCC--CceeEEEecCccCCC-C----hHHHH
Q 022285 21 VSAVLNAIRDLGDEAVEQ-------C----DPQIITQASSLSQL----PVES--FSIDTVLSISSSHEL-P----GDQLL 78 (299)
Q Consensus 21 ~~dlse~m~~~A~~~~~~-------~----~~~i~~~~gd~~~L----p~~~--~sfD~Vls~~~~~~~-~----~~~~L 78 (299)
..|++..-++.|+.+..+ . .-...|..+|.-.- -+++ ..||+|-+.+++|+. . ...+|
T Consensus 90 g~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l 169 (331)
T PF03291_consen 90 GIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFL 169 (331)
T ss_dssp EEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHH
Confidence 446666555556554411 1 13455677755422 1333 599999999999974 3 36699
Q ss_pred HHHHHhccCCcEEEEEecC
Q 022285 79 EEISRVLKPGGTILIYKKL 97 (299)
Q Consensus 79 ~ei~RvLKPGG~l~i~~~~ 97 (299)
..+.+.|||||.|+.+.+.
T Consensus 170 ~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 170 KNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp HHHHHTEEEEEEEEEEEE-
T ss_pred HHHHHhcCCCCEEEEEecC
Confidence 9999999999999987763
No 176
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=91.55 E-value=0.7 Score=45.93 Aligned_cols=97 Identities=13% Similarity=0.124 Sum_probs=63.9
Q ss_pred cChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCC----CCCCCCceeEEEecCccCCCChHHHHHHHHHhccCCcEEEE
Q 022285 19 LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQ----LPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILI 93 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~----Lp~~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i 93 (299)
++..|.++.|++.|++++... ..++.+..+|+.+ +++.+++||+|++....... ...+..+.+ |+|++.+++
T Consensus 322 V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~--~~~~~~l~~-~~~~~ivyv 398 (443)
T PRK13168 322 VVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAGA--AEVMQALAK-LGPKRIVYV 398 (443)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcCh--HHHHHHHHh-cCCCeEEEE
Confidence 446688999999999876543 3579999999864 34556789999987643332 345665655 699999887
Q ss_pred EecCCCCccchHHHHHHHHHHHHHCCceeceee
Q 022285 94 YKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI 126 (299)
Q Consensus 94 ~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~ 126 (299)
.-.. .+...++ ..|..+||.-....
T Consensus 399 SCnp-------~tlaRDl-~~L~~~gY~l~~i~ 423 (443)
T PRK13168 399 SCNP-------ATLARDA-GVLVEAGYRLKRAG 423 (443)
T ss_pred EeCh-------HHhhccH-HHHhhCCcEEEEEE
Confidence 7422 1111122 34557899765443
No 177
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=91.37 E-value=0.17 Score=51.07 Aligned_cols=47 Identities=19% Similarity=0.298 Sum_probs=36.8
Q ss_pred CCCCCCCCceeEEEecCccCC----CChHHHHHHHHHhccCCcEEEEEecC
Q 022285 51 SQLPVESFSIDTVLSISSSHE----LPGDQLLEEISRVLKPGGTILIYKKL 97 (299)
Q Consensus 51 ~~Lp~~~~sfD~Vls~~~~~~----~~~~~~L~ei~RvLKPGG~l~i~~~~ 97 (299)
|.++.-+.+||+|.+...+.. +....++-|+-|+|+|||.++|.+..
T Consensus 419 E~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~ 469 (506)
T PF03141_consen 419 EAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV 469 (506)
T ss_pred hccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence 355666889999998765432 33578999999999999999998753
No 178
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=91.24 E-value=0.94 Score=44.65 Aligned_cols=78 Identities=14% Similarity=0.139 Sum_probs=54.8
Q ss_pred ccChHHHHHHHHHHHHHHhhhc--C-CCeEEEeccCCCCC--C--CCCceeEEEecCccCCCC----------hHHHHHH
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQC--D-PQIITQASSLSQLP--V--ESFSIDTVLSISSSHELP----------GDQLLEE 80 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~--~-~~i~~~~gd~~~Lp--~--~~~sfD~Vls~~~~~~~~----------~~~~L~e 80 (299)
.++..|+++.+++.|++++... . .++.++.+|+..+- + ...+||+|++......-. -..++..
T Consensus 245 ~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~ 324 (396)
T PRK15128 245 QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINML 324 (396)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHH
Confidence 4566789999999999877543 2 37899999986541 1 245899999985432111 1234556
Q ss_pred HHHhccCCcEEEEEe
Q 022285 81 ISRVLKPGGTILIYK 95 (299)
Q Consensus 81 i~RvLKPGG~l~i~~ 95 (299)
..++|+|||.|+...
T Consensus 325 a~~lLk~gG~lv~~s 339 (396)
T PRK15128 325 AIQLLNPGGILLTFS 339 (396)
T ss_pred HHHHcCCCeEEEEEe
Confidence 789999999998765
No 179
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=91.03 E-value=0.27 Score=46.37 Aligned_cols=77 Identities=16% Similarity=0.187 Sum_probs=57.0
Q ss_pred ccChHHHHHHHHHHHHHHhhhc-----CCCeEEEeccCCCC-CCCCCceeEEEecCccC-----CCChHHHHHHHHHhcc
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQC-----DPQIITQASSLSQL-PVESFSIDTVLSISSSH-----ELPGDQLLEEISRVLK 86 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~-----~~~i~~~~gd~~~L-p~~~~sfD~Vls~~~~~-----~~~~~~~L~ei~RvLK 86 (299)
.+++.|+-+.+++.+++..... ++++..+.+|+.++ .-....||+|+.-..-. .+....+++.++|+|+
T Consensus 102 ~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~ 181 (282)
T COG0421 102 RITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALK 181 (282)
T ss_pred eEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcC
Confidence 3446677888999998865322 48999999988765 22233799999876433 1124789999999999
Q ss_pred CCcEEEEE
Q 022285 87 PGGTILIY 94 (299)
Q Consensus 87 PGG~l~i~ 94 (299)
++|.++.+
T Consensus 182 ~~Gi~v~q 189 (282)
T COG0421 182 EDGIFVAQ 189 (282)
T ss_pred CCcEEEEe
Confidence 99999987
No 180
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=90.99 E-value=0.2 Score=41.43 Aligned_cols=72 Identities=25% Similarity=0.373 Sum_probs=45.8
Q ss_pred CeEEEeccCCC-CCCCCCceeEEEecC-ccCCCC---hHHHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHHHHHH
Q 022285 42 QIITQASSLSQ-LPVESFSIDTVLSIS-SSHELP---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLL 116 (299)
Q Consensus 42 ~i~~~~gd~~~-Lp~~~~sfD~Vls~~-~~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~ 116 (299)
.+....+|+.. ++--...||+|+.-- +-..-| ...++++++|+++|||+|.-.... ..+++.|.
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a-----------~~Vr~~L~ 100 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSSA-----------GAVRRALQ 100 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--B-----------HHHHHHHH
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeech-----------HHHHHHHH
Confidence 44556777753 332237899999753 211112 468999999999999999744322 26789999
Q ss_pred HCCceece
Q 022285 117 LAGFLDAQ 124 (299)
Q Consensus 117 laGFv~v~ 124 (299)
.+||....
T Consensus 101 ~aGF~v~~ 108 (124)
T PF05430_consen 101 QAGFEVEK 108 (124)
T ss_dssp HCTEEEEE
T ss_pred HcCCEEEE
Confidence 99998643
No 181
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=90.94 E-value=1.2 Score=44.02 Aligned_cols=113 Identities=16% Similarity=0.097 Sum_probs=73.6
Q ss_pred cceEEEEec------------CC-ccChHHHHHHHHHHHHHHhhh--c-CCCeEEEeccCCCC-C---CCCCceeEEEec
Q 022285 7 QSAVLALSE------------DK-ILPVSAVLNAIRDLGDEAVEQ--C-DPQIITQASSLSQL-P---VESFSIDTVLSI 66 (299)
Q Consensus 7 ~~~vLlL~~------------~~-~vt~~dlse~m~~~A~~~~~~--~-~~~i~~~~gd~~~L-p---~~~~sfD~Vls~ 66 (299)
|++||=|.. |+ .||..|++..-+.+|+++.+- . ...+.|+++|+-++ . -....||+|+.-
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD 297 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD 297 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence 678887754 55 788899999999999987643 2 35678999887543 2 123489999986
Q ss_pred Ccc------CCCC----hHHHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCce
Q 022285 67 SSS------HELP----GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL 121 (299)
Q Consensus 67 ~~~------~~~~----~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv 121 (299)
-.. ..+. -..++....++|+|||.+++...... -..+.-...+...+..+|..
T Consensus 298 PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~--~~~~~f~~~i~~a~~~~~~~ 360 (393)
T COG1092 298 PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH--FSSDLFLEIIARAAAAAGRR 360 (393)
T ss_pred CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc--cCHHHHHHHHHHHHHhcCCc
Confidence 421 1122 24688889999999999998865432 11121122444555555543
No 182
>PRK11524 putative methyltransferase; Provisional
Probab=90.79 E-value=0.23 Score=46.40 Aligned_cols=53 Identities=21% Similarity=0.197 Sum_probs=36.9
Q ss_pred eEEEeccCCCC--CCCCCceeEEEecCccC-------C---------CC-hHHHHHHHHHhccCCcEEEEEe
Q 022285 43 IITQASSLSQL--PVESFSIDTVLSISSSH-------E---------LP-GDQLLEEISRVLKPGGTILIYK 95 (299)
Q Consensus 43 i~~~~gd~~~L--p~~~~sfD~Vls~~~~~-------~---------~~-~~~~L~ei~RvLKPGG~l~i~~ 95 (299)
..+..+|...+ .+++++||+|++.-.+. . .. ....+.++.|+|||||.|++..
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 34566666653 46788999999864321 0 00 2468899999999999999863
No 183
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=90.45 E-value=0.33 Score=42.27 Aligned_cols=70 Identities=21% Similarity=0.281 Sum_probs=47.8
Q ss_pred CCceeEEEecCccCCCC------------hHHHHHHHHHhccCCcEEEEEecCCCCccchH--HHHHHHHHHHHHCCcee
Q 022285 57 SFSIDTVLSISSSHELP------------GDQLLEEISRVLKPGGTILIYKKLTSDKGDVD--KAISALEGKLLLAGFLD 122 (299)
Q Consensus 57 ~~sfD~Vls~~~~~~~~------------~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~--~~~~~l~~~L~laGFv~ 122 (299)
.++||.+.+..++.|+- ....+.++.++|||||.|++..+...+.=.++ .++..++..+++.||.-
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~ 140 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEW 140 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEE
Confidence 45799988877653331 25788999999999999999987643211111 12345566789999997
Q ss_pred ceee
Q 022285 123 AQRI 126 (299)
Q Consensus 123 v~~~ 126 (299)
+...
T Consensus 141 i~tf 144 (177)
T PF03269_consen 141 IDTF 144 (177)
T ss_pred Eeee
Confidence 7653
No 184
>PLN02476 O-methyltransferase
Probab=90.40 E-value=0.28 Score=46.14 Aligned_cols=76 Identities=13% Similarity=0.146 Sum_probs=53.8
Q ss_pred cChHHHHHHHHHHHHHHhhhc--CCCeEEEeccCCC-CC-C----CCCceeEEEecCccCCCChHHHHHHHHHhccCCcE
Q 022285 19 LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQ-LP-V----ESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGT 90 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~--~~~i~~~~gd~~~-Lp-~----~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~ 90 (299)
++..|..+++.+.|+++.++. ..++.++.+++.. |+ + ..++||.|+.-..-.. -...+..+.+.|+|||.
T Consensus 146 V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~K~~--Y~~y~e~~l~lL~~GGv 223 (278)
T PLN02476 146 LVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADKRM--YQDYFELLLQLVRVGGV 223 (278)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCCHHH--HHHHHHHHHHhcCCCcE
Confidence 444566678888888877654 4589999998754 22 1 1368999998764221 24678889999999999
Q ss_pred EEEEec
Q 022285 91 ILIYKK 96 (299)
Q Consensus 91 l~i~~~ 96 (299)
+++-+.
T Consensus 224 IV~DNv 229 (278)
T PLN02476 224 IVMDNV 229 (278)
T ss_pred EEEecC
Confidence 987654
No 185
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=90.04 E-value=0.65 Score=41.41 Aligned_cols=92 Identities=7% Similarity=-0.041 Sum_probs=58.5
Q ss_pred ccceEEEEecCC-------------ccChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCC-CCCCCCceeEEEecCccC
Q 022285 6 MQSAVLALSEDK-------------ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQ-LPVESFSIDTVLSISSSH 70 (299)
Q Consensus 6 ~~~~vLlL~~~~-------------~vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~-Lp~~~~sfD~Vls~~~~~ 70 (299)
.+.+||-|..|+ .++..|..+...+.++++++.. ..++.++.+|+.. ++.....||+|++.-.+.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR 132 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC
Confidence 355677665543 2334466677777777776554 3478899998865 332345799999998754
Q ss_pred CCChHHHHHHHHH--hccCCcEEEEEecC
Q 022285 71 ELPGDQLLEEISR--VLKPGGTILIYKKL 97 (299)
Q Consensus 71 ~~~~~~~L~ei~R--vLKPGG~l~i~~~~ 97 (299)
.--...++..+.. +|+|+|.+++....
T Consensus 133 ~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 133 KGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 3223455555555 37999988877554
No 186
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=89.33 E-value=0.67 Score=47.11 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=44.0
Q ss_pred CCCeEEEeccCCCC--CCCCCceeEEEecCccCCCC---------hHHHHHHHHHhccCCcEEEEEec
Q 022285 40 DPQIITQASSLSQL--PVESFSIDTVLSISSSHELP---------GDQLLEEISRVLKPGGTILIYKK 96 (299)
Q Consensus 40 ~~~i~~~~gd~~~L--p~~~~sfD~Vls~~~~~~~~---------~~~~L~ei~RvLKPGG~l~i~~~ 96 (299)
..|+.+..+++..+ -|+++++|.|+.+|.--|.. ...++.+++++|||||.|.+.+-
T Consensus 396 l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 396 ITNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred CCeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 46777777776533 37789999999998644321 37899999999999999988753
No 187
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=89.10 E-value=0.23 Score=44.55 Aligned_cols=79 Identities=18% Similarity=0.223 Sum_probs=54.7
Q ss_pred CccChHHHHHHHHHHHHHHhhhc--CCCeEEEeccCCCC-C-----CCCCceeEEEecCccCCCChHHHHHHHHHhccCC
Q 022285 17 KILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQL-P-----VESFSIDTVLSISSSHELPGDQLLEEISRVLKPG 88 (299)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~~--~~~i~~~~gd~~~L-p-----~~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPG 88 (299)
+.++..|..+++.+.|++...+. ..+|+++.+++... + .+.+.||.|+.-..-.. -...+..+.+.|+||
T Consensus 71 g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K~~--y~~y~~~~~~ll~~g 148 (205)
T PF01596_consen 71 GKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADKRN--YLEYFEKALPLLRPG 148 (205)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTGGG--HHHHHHHHHHHEEEE
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccccc--hhhHHHHHhhhccCC
Confidence 45555567777888888766543 46899999987642 2 11358999998764222 245778889999999
Q ss_pred cEEEEEecC
Q 022285 89 GTILIYKKL 97 (299)
Q Consensus 89 G~l~i~~~~ 97 (299)
|.+++-+..
T Consensus 149 gvii~DN~l 157 (205)
T PF01596_consen 149 GVIIADNVL 157 (205)
T ss_dssp EEEEEETTT
T ss_pred eEEEEcccc
Confidence 999987643
No 188
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=88.96 E-value=2.6 Score=39.48 Aligned_cols=97 Identities=22% Similarity=0.259 Sum_probs=64.4
Q ss_pred ccChHHHHHHHHHHHHHHhhhcC-CCeEEEeccCCCCCCCCCceeEEEecCccC-------------CCC----------
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQCD-PQIITQASSLSQLPVESFSIDTVLSISSSH-------------ELP---------- 73 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~-~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~-------------~~~---------- 73 (299)
.|+..|++...++.|+.++.... .++.++.+|.-. ++. ..||+|+++-.+. +-|
T Consensus 136 ~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~-~~~-~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dG 213 (280)
T COG2890 136 EVIAVDISPDALALARENAERNGLVRVLVVQSDLFE-PLR-GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDG 213 (280)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc-ccC-CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccH
Confidence 56678999999999998876643 556666665322 232 3899999985311 000
Q ss_pred ---hHHHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCC-ceece
Q 022285 74 ---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAG-FLDAQ 124 (299)
Q Consensus 74 ---~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laG-Fv~v~ 124 (299)
...++.++.+.|+|||.+++...... ...+...+...| |..+.
T Consensus 214 l~~~~~i~~~a~~~l~~~g~l~le~g~~q--------~~~v~~~~~~~~~~~~v~ 260 (280)
T COG2890 214 LEVYRRILGEAPDILKPGGVLILEIGLTQ--------GEAVKALFEDTGFFEIVE 260 (280)
T ss_pred HHHHHHHHHhhHHHcCCCcEEEEEECCCc--------HHHHHHHHHhcCCceEEE
Confidence 14677888999999988887654221 125677888999 55443
No 189
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=88.77 E-value=1.6 Score=43.02 Aligned_cols=107 Identities=14% Similarity=0.063 Sum_probs=67.0
Q ss_pred cceEEEEecCC------------ccChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCC----CCCCCceeEEEecCcc
Q 022285 7 QSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQL----PVESFSIDTVLSISSS 69 (299)
Q Consensus 7 ~~~vLlL~~~~------------~vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~L----p~~~~sfD~Vls~~~~ 69 (299)
+.+||-|..|+ .+...|.++.|.+.|++++... ..++.++.+|+..+ ++.+.+||+|+..-.-
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr 372 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPR 372 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCC
Confidence 34666665543 3446688899999998876543 46899999998652 3445689999986543
Q ss_pred CCCChHHHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCceec
Q 022285 70 HELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA 123 (299)
Q Consensus 70 ~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v 123 (299)
..+ ...++..+.+ |+|++.+++.-. +.+...+ ...|...||.-.
T Consensus 373 ~G~-~~~~l~~l~~-l~~~~ivyvsc~-------p~tlard-~~~l~~~gy~~~ 416 (431)
T TIGR00479 373 KGC-AAEVLRTIIE-LKPERIVYVSCN-------PATLARD-LEFLCKEGYGIT 416 (431)
T ss_pred CCC-CHHHHHHHHh-cCCCEEEEEcCC-------HHHHHHH-HHHHHHCCeeEE
Confidence 222 2456666554 899988776521 2221112 234566788643
No 190
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=88.41 E-value=0.33 Score=44.82 Aligned_cols=77 Identities=10% Similarity=0.074 Sum_probs=52.7
Q ss_pred ccChHHHHHHHHHHHHHHhhhc--CCCeEEEeccCCCC-C-C-----CCCceeEEEecCccCCCChHHHHHHHHHhccCC
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQL-P-V-----ESFSIDTVLSISSSHELPGDQLLEEISRVLKPG 88 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~--~~~i~~~~gd~~~L-p-~-----~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPG 88 (299)
.++..|..++..+.|+...++. ..+|.++.|++... + + ..++||.|+.-..-.. -...+..+.+.|+||
T Consensus 106 ~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK~~--Y~~y~~~~l~ll~~G 183 (247)
T PLN02589 106 KILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDN--YINYHKRLIDLVKVG 183 (247)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCCHHH--hHHHHHHHHHhcCCC
Confidence 4444455667778888776543 57899999977643 2 1 1368999998754221 235677888999999
Q ss_pred cEEEEEec
Q 022285 89 GTILIYKK 96 (299)
Q Consensus 89 G~l~i~~~ 96 (299)
|.+++-+.
T Consensus 184 Gviv~DNv 191 (247)
T PLN02589 184 GVIGYDNT 191 (247)
T ss_pred eEEEEcCC
Confidence 99886543
No 191
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=88.00 E-value=5.4 Score=36.85 Aligned_cols=115 Identities=15% Similarity=0.087 Sum_probs=60.6
Q ss_pred cceEEEEecCC-------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCC---CceeEEEecCccC
Q 022285 7 QSAVLALSEDK-------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVES---FSIDTVLSISSSH 70 (299)
Q Consensus 7 ~~~vLlL~~~~-------------~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~---~sfD~Vls~~~~~ 70 (299)
|.++|+|-+.- .+++.|+=+.+++..++.+++..-.+.....|+.. |+|. +.||+++.--...
T Consensus 45 gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~-~LP~~~~~~fD~f~TDPPyT 123 (243)
T PF01861_consen 45 GKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRD-PLPEELRGKFDVFFTDPPYT 123 (243)
T ss_dssp T-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS----TTTSS-BSEEEE---SS
T ss_pred CCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccc-cCCHHHhcCCCEEEeCCCCC
Confidence 45677775543 44445666777777766555555558888888864 4554 7899999875322
Q ss_pred CCChHHHHHHHHHhccCCcEE-EEEecCCCCccchHHHHHHHHHHHHHCCceecee
Q 022285 71 ELPGDQLLEEISRVLKPGGTI-LIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (299)
Q Consensus 71 ~~~~~~~L~ei~RvLKPGG~l-~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~ 125 (299)
---...+++.-...||.-|.. ++.-... ......|..+++.+...||+....
T Consensus 124 ~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~---~~s~~~~~~~Q~~l~~~gl~i~di 176 (243)
T PF01861_consen 124 PEGLKLFLSRGIEALKGEGCAGYFGFTHK---EASPDKWLEVQRFLLEMGLVITDI 176 (243)
T ss_dssp HHHHHHHHHHHHHTB-STT-EEEEEE-TT---T--HHHHHHHHHHHHTS--EEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEEecC---cCcHHHHHHHHHHHHHCCcCHHHH
Confidence 111456888888999977743 4433221 112345668889999999997654
No 192
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=85.62 E-value=1.5 Score=38.72 Aligned_cols=75 Identities=24% Similarity=0.296 Sum_probs=50.2
Q ss_pred CCCeEEEeccCCCCCCCCCceeEEEecCccCCCChHHHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCC
Q 022285 40 DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAG 119 (299)
Q Consensus 40 ~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laG 119 (299)
..|+.+..+.++. +....+||+|++-... +...++.-..+.|++||++++.-... ...-.......+...|
T Consensus 97 L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~---~l~~l~~~~~~~l~~~G~~l~~KG~~-----~~~El~~~~~~~~~~~ 167 (184)
T PF02527_consen 97 LSNVEVINGRAEE-PEYRESFDVVTARAVA---PLDKLLELARPLLKPGGRLLAYKGPD-----AEEELEEAKKAWKKLG 167 (184)
T ss_dssp -SSEEEEES-HHH-TTTTT-EEEEEEESSS---SHHHHHHHHGGGEEEEEEEEEEESS-------HHHHHTHHHHHHCCC
T ss_pred CCCEEEEEeeecc-cccCCCccEEEeehhc---CHHHHHHHHHHhcCCCCEEEEEcCCC-----hHHHHHHHHhHHHHhC
Confidence 4689999999998 5568899999998743 24678888999999999998875321 1122224455566555
Q ss_pred ceec
Q 022285 120 FLDA 123 (299)
Q Consensus 120 Fv~v 123 (299)
....
T Consensus 168 ~~~~ 171 (184)
T PF02527_consen 168 LKVL 171 (184)
T ss_dssp EEEE
T ss_pred CEEe
Confidence 5543
No 193
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=84.55 E-value=1.6 Score=41.02 Aligned_cols=73 Identities=12% Similarity=0.252 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhh---hcCCCeEEEeccCCCCCCCCCceeEEEecCcc--CCCChHHHHHHHHHhccCCcEEEEEe
Q 022285 23 AVLNAIRDLGDEAVE---QCDPQIITQASSLSQLPVESFSIDTVLSISSS--HELPGDQLLEEISRVLKPGGTILIYK 95 (299)
Q Consensus 23 dlse~m~~~A~~~~~---~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~--~~~~~~~~L~ei~RvLKPGG~l~i~~ 95 (299)
|..++..+.|++-+. ....++.|..+|+...+..-..||+|+...-. ..-+...++.++.+.++||..+++..
T Consensus 153 D~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 153 DIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp ESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred eCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 334455555655333 23678999999998887766799999866421 12246789999999999999998884
No 194
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=83.71 E-value=1.4 Score=38.71 Aligned_cols=60 Identities=20% Similarity=0.193 Sum_probs=48.0
Q ss_pred hcCCCeEEEeccCCCCC-----CCCCceeEEEecCccCCCC---hHHHHHHHHHhccCCcEEEEEecC
Q 022285 38 QCDPQIITQASSLSQLP-----VESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIYKKL 97 (299)
Q Consensus 38 ~~~~~i~~~~gd~~~Lp-----~~~~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~ 97 (299)
+.++.+.++.||+..+. +....||.|+|...+..++ .-++++++..-|.+||.|+-...+
T Consensus 91 ~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 91 QLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred HhCCCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 34677778888887764 5677899999999888887 367899999999999999866554
No 195
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=83.08 E-value=2.1 Score=40.49 Aligned_cols=77 Identities=12% Similarity=0.033 Sum_probs=52.5
Q ss_pred ccChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCCC-CCCceeEEEecCccCCCChHHHHHHHHHhccCCcEEEEEe
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPV-ESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 95 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp~-~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~ 95 (299)
.++..|+++.|++.|+++++.. ..++.++++|+..+.. ..+.||+|+..-.-.... ..++ ++...++|++.+++.-
T Consensus 197 ~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~G~~-~~~~-~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 197 QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRRGIG-KELC-DYLSQMAPRFILYSSC 274 (315)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCCCcc-HHHH-HHHHHcCCCeEEEEEC
Confidence 4567789999999998876543 3579999999987643 245799999886422222 2333 4445578888777664
Q ss_pred c
Q 022285 96 K 96 (299)
Q Consensus 96 ~ 96 (299)
.
T Consensus 275 ~ 275 (315)
T PRK03522 275 N 275 (315)
T ss_pred C
Confidence 3
No 196
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.53 E-value=2.3 Score=37.31 Aligned_cols=63 Identities=17% Similarity=0.336 Sum_probs=46.0
Q ss_pred CCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCceec
Q 022285 55 VESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA 123 (299)
Q Consensus 55 ~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v 123 (299)
....+||.|++.--+..-. .+.+..-|.+.|+|.|+-++..+..+ .+.+.+.......||...
T Consensus 99 ~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg------~sL~kF~de~~~~gf~v~ 162 (201)
T KOG3201|consen 99 QEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRG------QSLQKFLDEVGTVGFTVC 162 (201)
T ss_pred HhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCccc------chHHHHHHHHHhceeEEE
Confidence 3467999999875322211 46788999999999999888777653 234467788899999864
No 197
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=82.34 E-value=2.6 Score=35.69 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhhhc--CCCeEEEeccCCCCC--CCCCceeEEEecCcc-----CCCC-----hHHHHHHHHHhccCC
Q 022285 23 AVLNAIRDLGDEAVEQC--DPQIITQASSLSQLP--VESFSIDTVLSISSS-----HELP-----GDQLLEEISRVLKPG 88 (299)
Q Consensus 23 dlse~m~~~A~~~~~~~--~~~i~~~~gd~~~Lp--~~~~sfD~Vls~~~~-----~~~~-----~~~~L~ei~RvLKPG 88 (299)
|+-++.++..++++++. ..++.++..+-+++. ++.+.+|+|+.+..+ +.+- .-.++..+.+.|+||
T Consensus 6 DIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL~~g 85 (140)
T PF06962_consen 6 DIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELLKPG 85 (140)
T ss_dssp ES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHEEEE
T ss_pred ECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhhccC
Confidence 44455566666666543 347999888777664 233589999988642 2211 246899999999999
Q ss_pred cEEEEEecC
Q 022285 89 GTILIYKKL 97 (299)
Q Consensus 89 G~l~i~~~~ 97 (299)
|.+.|.-..
T Consensus 86 G~i~iv~Y~ 94 (140)
T PF06962_consen 86 GIITIVVYP 94 (140)
T ss_dssp EEEEEEE--
T ss_pred CEEEEEEeC
Confidence 999877654
No 198
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=81.95 E-value=8.7 Score=33.22 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=49.4
Q ss_pred cCCCCC----CCCCceeEEEecCccCC---------C--C---hHHHHHHHHHhccCCcEEEEEecCCCCccchHHHHHH
Q 022285 49 SLSQLP----VESFSIDTVLSISSSHE---------L--P---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISA 110 (299)
Q Consensus 49 d~~~Lp----~~~~sfD~Vls~~~~~~---------~--~---~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~ 110 (299)
|+..|. +....||.|+.++.... + + ...++....++|+++|.++|.-...... ..| +
T Consensus 61 Dat~l~~~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py----~~W-~ 135 (166)
T PF10354_consen 61 DATKLHKHFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY----DSW-N 135 (166)
T ss_pred CCCcccccccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC----ccc-c
Confidence 555543 35688999999986333 1 1 2567888899999999999886543211 223 4
Q ss_pred HHHHHHHCCceeceee
Q 022285 111 LEGKLLLAGFLDAQRI 126 (299)
Q Consensus 111 l~~~L~laGFv~v~~~ 126 (299)
+......+||+-....
T Consensus 136 i~~lA~~~gl~l~~~~ 151 (166)
T PF10354_consen 136 IEELAAEAGLVLVRKV 151 (166)
T ss_pred HHHHHHhcCCEEEEEe
Confidence 5567788999876644
No 199
>PF08090 Enterotoxin_HS1: Heat stable E.coli enterotoxin 1; InterPro: IPR012557 Heat-stable toxin 1 of entero-aggregative Escherichia coli (EAST1) is a small toxin. It is not, however, solely associated with entero-aggregative E. coli but also with many other diarrhoeic E. coli families. Some studies have established the role of EAST1 in some human outbreaks of diarrhoea. Isolates from farm animals have been shown to carry the astA gene coding for EAST1. However, the relation between the presence of EAST1 and disease is not conclusive [].
Probab=81.75 E-value=0.54 Score=29.67 Aligned_cols=21 Identities=33% Similarity=0.642 Sum_probs=18.3
Q ss_pred CCCCCCCcchh-hhccCCCCCC
Q 022285 232 NPQSACGSVMW-TWRCFPLRYM 252 (299)
Q Consensus 232 ~~~ssCGsC~L-AFRC~~CPYl 252 (299)
.|.|||.||-+ .--|++||=+
T Consensus 7 ~pass~asciwc~tac~s~~gr 28 (36)
T PF08090_consen 7 RPASSCASCIWCTTACGSCHGR 28 (36)
T ss_pred ccccchhhHHHHHhhhccCCCC
Confidence 37899999999 8889999865
No 200
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=81.61 E-value=2.7 Score=42.43 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCC-CCCCceeEEEecCc------c--------CCCC---------hHH
Q 022285 22 SAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP-VESFSIDTVLSISS------S--------HELP---------GDQ 76 (299)
Q Consensus 22 ~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp-~~~~sfD~Vls~~~------~--------~~~~---------~~~ 76 (299)
-|++...++..++++++. ..++.+...|...++ .-...||.|+.-.. + .|.+ ...
T Consensus 144 ~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~ 223 (470)
T PRK11933 144 NEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRE 223 (470)
T ss_pred EeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHH
Confidence 355555556666666654 456777778877653 33467999995431 1 1111 156
Q ss_pred HHHHHHHhccCCcEEEEEe
Q 022285 77 LLEEISRVLKPGGTILIYK 95 (299)
Q Consensus 77 ~L~ei~RvLKPGG~l~i~~ 95 (299)
+|...++.|||||+|+..+
T Consensus 224 iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 224 LIESAFHALKPGGTLVYST 242 (470)
T ss_pred HHHHHHHHcCCCcEEEEEC
Confidence 8888999999999996554
No 201
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=80.04 E-value=3.7 Score=43.43 Aligned_cols=79 Identities=14% Similarity=0.065 Sum_probs=55.6
Q ss_pred ccChHHHHHHHHHHHHHHhhhc--CCCeEEEeccCCCCCCCC--CceeEEEecCccCC-CC----hHHHHHHHHHhc---
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVES--FSIDTVLSISSSHE-LP----GDQLLEEISRVL--- 85 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~--~~~i~~~~gd~~~Lp~~~--~sfD~Vls~~~~~~-~~----~~~~L~ei~RvL--- 85 (299)
.+...|+.+.|+..|+.++... ...+.+.++|+.+++.+. ++||+|+++..+.. +. ...++.++.+.|
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~ 337 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQ 337 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHh
Confidence 4568899999999999887654 346889999999886543 57999999975432 11 234444444444
Q ss_pred cCCcEEEEEec
Q 022285 86 KPGGTILIYKK 96 (299)
Q Consensus 86 KPGG~l~i~~~ 96 (299)
.+|+++++...
T Consensus 338 ~~g~~~~llt~ 348 (702)
T PRK11783 338 FGGWNAALFSS 348 (702)
T ss_pred CCCCeEEEEeC
Confidence 48999877654
No 202
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=79.51 E-value=6 Score=38.50 Aligned_cols=76 Identities=9% Similarity=0.025 Sum_probs=52.1
Q ss_pred ccChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCCC-CCCceeEEEecCccCCCChHHHHHHHHHhccCCcEEEEEe
Q 022285 18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPV-ESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 95 (299)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp~-~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~ 95 (299)
.+...|.+..+++.|+++++.. ..++.+..+|+..+.. ....||+|+..-...... ..++..+. .++|++.+++.-
T Consensus 257 ~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~~-~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 257 QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRGIG-KELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCCCc-HHHHHHHH-hcCCCeEEEEEe
Confidence 3446688888999988876543 3489999999876421 124699999986543333 45566564 479999888764
No 203
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=79.45 E-value=6.1 Score=36.84 Aligned_cols=99 Identities=15% Similarity=0.129 Sum_probs=57.0
Q ss_pred ChHHHHHHHHHHHHHHhhhcC--CCeEEEeccC-CCCCCCCCceeEEEecCccCCCCh---HHHHHHHHHhccCCcEEEE
Q 022285 20 PVSAVLNAIRDLGDEAVEQCD--PQIITQASSL-SQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILI 93 (299)
Q Consensus 20 t~~dlse~m~~~A~~~~~~~~--~~i~~~~gd~-~~Lp~~~~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l~i 93 (299)
+..|.++.|++.++.-+.... ....+..... ...++. ..|+|++.+++..++. ..+++.+.+.+.+ .|+|
T Consensus 62 ~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVl 137 (274)
T PF09243_consen 62 TCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVL 137 (274)
T ss_pred eeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEE
Confidence 356778888888876443321 1111111111 122332 2399999999888774 3455555555544 8898
Q ss_pred EecCCCCccchHHHHHHHHHHHHHCCceecee
Q 022285 94 YKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (299)
Q Consensus 94 ~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~ 125 (299)
.|++... --.....++..|...||..+.-
T Consensus 138 VEpGt~~---Gf~~i~~aR~~l~~~~~~v~AP 166 (274)
T PF09243_consen 138 VEPGTPA---GFRRIAEARDQLLEKGAHVVAP 166 (274)
T ss_pred EcCCChH---HHHHHHHHHHHHhhCCCceECC
Confidence 8886421 1123456777788788876643
No 204
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=78.74 E-value=39 Score=30.81 Aligned_cols=121 Identities=22% Similarity=0.247 Sum_probs=72.3
Q ss_pred ccccceEEEEecCCccChH---HHHH---------------HHHHHHHHHhhhcCCCeEEEeccCCCCCCC----CCcee
Q 022285 4 GKMQSAVLALSEDKILPVS---AVLN---------------AIRDLGDEAVEQCDPQIITQASSLSQLPVE----SFSID 61 (299)
Q Consensus 4 ~~~~~~vLlL~~~~~vt~~---dlse---------------~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~----~~sfD 61 (299)
++.|++||.|-..+.+|.. |++. +++..+++ -+|+.-+.+|+.. |.. =+..|
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~-----R~Ni~PIL~DA~~-P~~Y~~~Ve~VD 147 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK-----RPNIIPILEDARK-PEKYRHLVEKVD 147 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh-----CCCceeeecccCC-cHHhhhhccccc
Confidence 4678999999765555533 3322 33333332 3567777777742 211 23467
Q ss_pred EEEecCccCCCChHHHHHHHHHhccCCcEEEEEecCCC--CccchHHHHHHHHHHHHHCCceeceeeccccc
Q 022285 62 TVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGKLLLAGFLDAQRIQLKSV 131 (299)
Q Consensus 62 ~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~--~~g~~~~~~~~l~~~L~laGFv~v~~~~~kp~ 131 (299)
+|+.--+.. -..+-+...+..-||+||.+++..-..+ .-.++...+.+....|...||...+.....|.
T Consensus 148 viy~DVAQp-~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LePy 218 (231)
T COG1889 148 VIYQDVAQP-NQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEPY 218 (231)
T ss_pred EEEEecCCc-hHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccCCc
Confidence 777643211 1134567778889999998776643221 11334555566667899999998877766653
No 205
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=78.74 E-value=3.9 Score=40.22 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=48.0
Q ss_pred CCeEEEeccCCCC--CCCCCceeEEEecCccCCCC---hHHHHHHHHHhccCCcEEEEEecCC
Q 022285 41 PQIITQASSLSQL--PVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIYKKLT 98 (299)
Q Consensus 41 ~~i~~~~gd~~~L--p~~~~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~~ 98 (299)
.++.+..+++.+. -.++++||.++..-..-|++ ....+++|.|.++|||++++.....
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 6788888877754 24689999999988888888 3678999999999999999988754
No 206
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=78.30 E-value=6.6 Score=37.67 Aligned_cols=75 Identities=15% Similarity=0.065 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHHhh-hcCCCeEE--EeccCCC----CCC--CCCceeEEEec-CccCCCCh---HHHHHHHHH-hcc
Q 022285 21 VSAVLNAIRDLGDEAVE-QCDPQIIT--QASSLSQ----LPV--ESFSIDTVLSI-SSSHELPG---DQLLEEISR-VLK 86 (299)
Q Consensus 21 ~~dlse~m~~~A~~~~~-~~~~~i~~--~~gd~~~----Lp~--~~~sfD~Vls~-~~~~~~~~---~~~L~ei~R-vLK 86 (299)
..|++.+++..+.+++. ..++.+.+ +.||... +|- ......+|+.. +++.++++ ..+|+++++ .|+
T Consensus 109 plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~ 188 (319)
T TIGR03439 109 ALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALS 188 (319)
T ss_pred EEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCC
Confidence 45888889988887776 55677776 5676643 321 12345566543 56777773 568899999 999
Q ss_pred CCcEEEEEe
Q 022285 87 PGGTILIYK 95 (299)
Q Consensus 87 PGG~l~i~~ 95 (299)
|||.|+|..
T Consensus 189 ~~d~lLiG~ 197 (319)
T TIGR03439 189 PSDSFLIGL 197 (319)
T ss_pred CCCEEEEec
Confidence 999998864
No 207
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=77.38 E-value=14 Score=35.18 Aligned_cols=107 Identities=12% Similarity=0.149 Sum_probs=64.1
Q ss_pred cChHHHHHHHHHHHHHHhhhc-CCCe-EEEeccCCCC-CCC--CCceeEEEecCccCCCCh----HHHHHHHHHhccCCc
Q 022285 19 LPVSAVLNAIRDLGDEAVEQC-DPQI-ITQASSLSQL-PVE--SFSIDTVLSISSSHELPG----DQLLEEISRVLKPGG 89 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~-~~~i-~~~~gd~~~L-p~~--~~sfD~Vls~~~~~~~~~----~~~L~ei~RvLKPGG 89 (299)
+.+.|.++.-++.+++.++.. ..++ .|.++|+-.. .+. +-..++++.+-.+..|+. ...++-+++++.|||
T Consensus 164 i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG 243 (311)
T PF12147_consen 164 ILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGG 243 (311)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCc
Confidence 345677777777777665543 4455 8888875432 111 223567666544445552 446778999999999
Q ss_pred EEEEEecC-CCCccchHH---------H-------HHHHHHHHHHCCceecee
Q 022285 90 TILIYKKL-TSDKGDVDK---------A-------ISALEGKLLLAGFLDAQR 125 (299)
Q Consensus 90 ~l~i~~~~-~~~~g~~~~---------~-------~~~l~~~L~laGFv~v~~ 125 (299)
.++...-. ....+-+.. . -.++......|||..++.
T Consensus 244 ~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~~q 296 (311)
T PF12147_consen 244 YLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKIDQ 296 (311)
T ss_pred EEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchhhh
Confidence 99877411 111111111 1 246777889999997643
No 208
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=77.10 E-value=8.1 Score=35.45 Aligned_cols=63 Identities=8% Similarity=0.015 Sum_probs=46.6
Q ss_pred ccceEEEEecCC------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCC
Q 022285 6 MQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE 71 (299)
Q Consensus 6 ~~~~vLlL~~~~------------~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~ 71 (299)
.+++||-+-.|. .++..|+.+.|...++++... ..++.++.+|+..++++ .||.|+++..++.
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~-~~~v~ii~~D~~~~~~~--~~d~Vv~NlPy~i 103 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA-AGNVEIIEGDALKVDLP--EFNKVVSNLPYQI 103 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc-CCCEEEEEeccccCCch--hceEEEEcCCccc
Confidence 356677776654 345667778888888876543 56899999999998875 4899999876554
No 209
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=76.01 E-value=1.6 Score=39.70 Aligned_cols=65 Identities=20% Similarity=0.246 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccC-CCChHHHHHHHHHhccC-CcEEEEE
Q 022285 22 SAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH-ELPGDQLLEEISRVLKP-GGTILIY 94 (299)
Q Consensus 22 ~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~-~~~~~~~L~ei~RvLKP-GG~l~i~ 94 (299)
-++++.|+.+-+++.-.....+++.+. +=.||+|.+.+.+. ++.+-.++..|+.+|.| +|++++.
T Consensus 140 TElS~tMr~rL~kk~ynVl~~~ew~~t--------~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 140 TELSWTMRDRLKKKNYNVLTEIEWLQT--------DVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HHhhHHHHHHHhhcCCceeeehhhhhc--------CceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 366667766544321111122223322 33699999988654 44577899999999999 9998766
No 210
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=75.31 E-value=13 Score=33.80 Aligned_cols=112 Identities=21% Similarity=0.220 Sum_probs=66.8
Q ss_pred cceEEEEecCCccC-hH----------HHHHHHHHHHH--HHh-hhc-CCCeEEEeccCCCCCCCCCceeEEEecCccCC
Q 022285 7 QSAVLALSEDKILP-VS----------AVLNAIRDLGD--EAV-EQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHE 71 (299)
Q Consensus 7 ~~~vLlL~~~~~vt-~~----------dlse~m~~~A~--~~~-~~~-~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~ 71 (299)
+.+++-|-+|+..+ +| .+++...+.+. +.+ ... ..|++++.+.+|.+.-....||+|++.....
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 35777777766665 22 23343333332 112 223 5789999999998863222299999976322
Q ss_pred CChHHHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCceeceee
Q 022285 72 LPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI 126 (299)
Q Consensus 72 ~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~ 126 (299)
...+..-....||+||.+++.-.... ..-..+.+......||......
T Consensus 147 --L~~l~e~~~pllk~~g~~~~~k~~~~-----~~e~~e~~~a~~~~~~~~~~~~ 194 (215)
T COG0357 147 --LNVLLELCLPLLKVGGGFLAYKGLAG-----KDELPEAEKAILPLGGQVEKVF 194 (215)
T ss_pred --hHHHHHHHHHhcccCCcchhhhHHhh-----hhhHHHHHHHHHhhcCcEEEEE
Confidence 34566778899999999864433211 1122355666777777765443
No 211
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=75.01 E-value=21 Score=31.74 Aligned_cols=93 Identities=13% Similarity=0.008 Sum_probs=58.0
Q ss_pred ccceEEEEecCCccC-hH------------HHHHHHHHHHHHHhhhcC--CCeEEEeccCCCC--CCCC-CceeEEEecC
Q 022285 6 MQSAVLALSEDKILP-VS------------AVLNAIRDLGDEAVEQCD--PQIITQASSLSQL--PVES-FSIDTVLSIS 67 (299)
Q Consensus 6 ~~~~vLlL~~~~~vt-~~------------dlse~m~~~A~~~~~~~~--~~i~~~~gd~~~L--p~~~-~sfD~Vls~~ 67 (299)
.|.+||-|..|+-.- +. |.........+++++... .+......|+... .... +.||+|+.--
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 477889888876543 33 333344555555665544 6777777777633 1222 2599999987
Q ss_pred ccCCCC--hHHHHHH--HHHhccCCcEEEEEecCC
Q 022285 68 SSHELP--GDQLLEE--ISRVLKPGGTILIYKKLT 98 (299)
Q Consensus 68 ~~~~~~--~~~~L~e--i~RvLKPGG~l~i~~~~~ 98 (299)
.+++-. ....+.. -..+|+|+|.+++.....
T Consensus 123 Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 123 PYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred CCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 776322 2333333 558899999999876543
No 212
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=74.77 E-value=2.3 Score=40.23 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=51.3
Q ss_pred cChHHHHHHHHHHHHHHhhh--c-CCCeEEEeccCCC-CC-C-CCCceeEEEecCcc---CCCC----hHHHHHHHHHhc
Q 022285 19 LPVSAVLNAIRDLGDEAVEQ--C-DPQIITQASSLSQ-LP-V-ESFSIDTVLSISSS---HELP----GDQLLEEISRVL 85 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~--~-~~~i~~~~gd~~~-Lp-~-~~~sfD~Vls~~~~---~~~~----~~~~L~ei~RvL 85 (299)
|+..|++...+++|+++++- . ...+.|+++|+-. +. + ....||+|+.--.. ..+. -..++..+.++|
T Consensus 149 v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll 228 (286)
T PF10672_consen 149 VVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLL 228 (286)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTE
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 56779999999999987542 2 3578999988754 21 1 24689999986431 1122 246788899999
Q ss_pred cCCcEEEEEecC
Q 022285 86 KPGGTILIYKKL 97 (299)
Q Consensus 86 KPGG~l~i~~~~ 97 (299)
+|||.|++....
T Consensus 229 ~~gG~l~~~scs 240 (286)
T PF10672_consen 229 KPGGLLLTCSCS 240 (286)
T ss_dssp EEEEEEEEEE--
T ss_pred CCCCEEEEEcCC
Confidence 999999877643
No 213
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.50 E-value=3.7 Score=37.68 Aligned_cols=82 Identities=24% Similarity=0.254 Sum_probs=51.4
Q ss_pred EEEecCCccChHHHHHHHHHHHHHHh--hhcCCCeEEEeccCC-CC-----CCCCCceeEEEecCccCCCC-hHHHHHHH
Q 022285 11 LALSEDKILPVSAVLNAIRDLGDEAV--EQCDPQIITQASSLS-QL-----PVESFSIDTVLSISSSHELP-GDQLLEEI 81 (299)
Q Consensus 11 LlL~~~~~vt~~dlse~m~~~A~~~~--~~~~~~i~~~~gd~~-~L-----p~~~~sfD~Vls~~~~~~~~-~~~~L~ei 81 (299)
|.|-++..+...|+-..--+++.... +.....|.++++.+. .| ..+.++||.++.-. |-. -...+.+.
T Consensus 93 lalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFvDa---dK~nY~~y~e~~ 169 (237)
T KOG1663|consen 93 LALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAFVDA---DKDNYSNYYERL 169 (237)
T ss_pred HhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEEEcc---chHHHHHHHHHH
Confidence 44545555554444444444443322 233567888887544 22 34578999999854 221 13678899
Q ss_pred HHhccCCcEEEEEe
Q 022285 82 SRVLKPGGTILIYK 95 (299)
Q Consensus 82 ~RvLKPGG~l~i~~ 95 (299)
.++||+||.+++-+
T Consensus 170 l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 170 LRLLRVGGVIVVDN 183 (237)
T ss_pred HhhcccccEEEEec
Confidence 99999999998765
No 214
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=74.47 E-value=7.4 Score=37.54 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=43.9
Q ss_pred CceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEEEEec----CCCCcc-----chHHHHHHHHHHHHHCCceeceee
Q 022285 58 FSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKK----LTSDKG-----DVDKAISALEGKLLLAGFLDAQRI 126 (299)
Q Consensus 58 ~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~----~~~~~g-----~~~~~~~~l~~~L~laGFv~v~~~ 126 (299)
++||+|+..+-+-.-+ .-..+..|..+|||||..+=.-+ ...+.| .+.-+.+++.+....-||......
T Consensus 258 ~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 3699998775322222 34678999999999998863211 111111 223345688888889999987554
No 215
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=74.46 E-value=9.1 Score=37.57 Aligned_cols=97 Identities=20% Similarity=0.235 Sum_probs=52.7
Q ss_pred cChHHHHHHHHHHHHHHhhhcC-CCeEE----EeccCCCCCCCCCceeEEEecCccCCC----ChHHHHHHHHHhccCCc
Q 022285 19 LPVSAVLNAIRDLGDEAVEQCD-PQIIT----QASSLSQLPVESFSIDTVLSISSSHEL----PGDQLLEEISRVLKPGG 89 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~~-~~i~~----~~gd~~~Lp~~~~sfD~Vls~~~~~~~----~~~~~L~ei~RvLKPGG 89 (299)
+++.+.+..+.+....-.+... ....+ +.-+-..+|. ...|++|+...-+.+. +....+..+..++.|||
T Consensus 141 a~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~-ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg 219 (484)
T COG5459 141 AVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA-ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGG 219 (484)
T ss_pred hhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc-cceeehhhhhhhhccccCcchHHHHHHHHHHhccCCC
Confidence 3455666666665543222221 11222 2223334443 3468888776543332 23458899999999999
Q ss_pred EEEEEecCCCCccchHHHHHHHHHHHHHCC
Q 022285 90 TILIYKKLTSDKGDVDKAISALEGKLLLAG 119 (299)
Q Consensus 90 ~l~i~~~~~~~~g~~~~~~~~l~~~L~laG 119 (299)
.|+|.+.+.. .-+. .+...+..|+..|
T Consensus 220 ~lVivErGtp--~Gf~-~I~rAR~~ll~~~ 246 (484)
T COG5459 220 HLVIVERGTP--AGFE-RILRARQILLAPG 246 (484)
T ss_pred eEEEEeCCCc--hhHH-HHHHHHHHHhcCC
Confidence 9999998532 1121 2223444555555
No 216
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=73.94 E-value=6.1 Score=34.10 Aligned_cols=58 Identities=24% Similarity=0.371 Sum_probs=33.1
Q ss_pred CCCeEEEeccCCC-C---CCCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEEEEecC
Q 022285 40 DPQIITQASSLSQ-L---PVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKL 97 (299)
Q Consensus 40 ~~~i~~~~gd~~~-L---p~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~ 97 (299)
..++.+..-+-.. + .+....||+|+..-.+..-. .+.++.-+.++|+|+|.+++....
T Consensus 96 ~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 96 DGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp ----EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred cccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 3455555544322 1 13456899999987655433 578899999999999998777654
No 217
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=73.31 E-value=14 Score=32.47 Aligned_cols=90 Identities=11% Similarity=-0.031 Sum_probs=53.8
Q ss_pred cceEEEEecCCc-------------cChHHHHHHHHHHHHHHhhhc--CCCeEEEeccCCC-CC-C-CC-CceeEEEecC
Q 022285 7 QSAVLALSEDKI-------------LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQ-LP-V-ES-FSIDTVLSIS 67 (299)
Q Consensus 7 ~~~vLlL~~~~~-------------vt~~dlse~m~~~A~~~~~~~--~~~i~~~~gd~~~-Lp-~-~~-~sfD~Vls~~ 67 (299)
|.+||-|..|+- ++..|......+.++++++.. ..++.++.+|+.. +. + .. ..||+|+.--
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DP 129 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDP 129 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECc
Confidence 567777766543 344566677777777766543 2468888888843 22 2 12 2478888765
Q ss_pred ccCCCChHHHHHHHHH--hccCCcEEEEEec
Q 022285 68 SSHELPGDQLLEEISR--VLKPGGTILIYKK 96 (299)
Q Consensus 68 ~~~~~~~~~~L~ei~R--vLKPGG~l~i~~~ 96 (299)
.+..-....++..+.+ +|+++|.+++...
T Consensus 130 Py~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 130 PFFNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred CCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 4433223445554443 6888887776543
No 218
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=71.76 E-value=7 Score=40.83 Aligned_cols=71 Identities=18% Similarity=0.250 Sum_probs=47.1
Q ss_pred CeEEEeccCCC-CCCCCCceeEEEec-CccCCCC---hHHHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHHHHHH
Q 022285 42 QIITQASSLSQ-LPVESFSIDTVLSI-SSSHELP---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLL 116 (299)
Q Consensus 42 ~i~~~~gd~~~-Lp~~~~sfD~Vls~-~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~ 116 (299)
.+....+|+.. ++--...||+|+.- |+-...| ...++++++|.++|||+|.-... ...+++.|.
T Consensus 148 ~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~-----------a~~vr~~l~ 216 (662)
T PRK01747 148 TLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTS-----------AGFVRRGLQ 216 (662)
T ss_pred EEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeeh-----------HHHHHHHHH
Confidence 34455677753 22112569999974 2222222 47899999999999999974432 126788999
Q ss_pred HCCceec
Q 022285 117 LAGFLDA 123 (299)
Q Consensus 117 laGFv~v 123 (299)
.+||...
T Consensus 217 ~~GF~v~ 223 (662)
T PRK01747 217 EAGFTVR 223 (662)
T ss_pred HcCCeee
Confidence 9999753
No 219
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=71.38 E-value=10 Score=38.03 Aligned_cols=52 Identities=19% Similarity=0.397 Sum_probs=37.1
Q ss_pred cCCCeEEEeccCCCCCCCCCceeEEEecCc----cCCCChHHHHHHHHHhccCCcEEE
Q 022285 39 CDPQIITQASSLSQLPVESFSIDTVLSISS----SHELPGDQLLEEISRVLKPGGTIL 92 (299)
Q Consensus 39 ~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~----~~~~~~~~~L~ei~RvLKPGG~l~ 92 (299)
...+|+++.+|++.+..+. .+|+|+|-.- .+.+ ..+.|....|.|||||.++
T Consensus 239 w~~~V~vi~~d~r~v~lpe-kvDIIVSElLGsfg~nEl-~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 239 WGDKVTVIHGDMREVELPE-KVDIIVSELLGSFGDNEL-SPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp TTTTEEEEES-TTTSCHSS--EEEEEE---BTTBTTTS-HHHHHHHGGGGEEEEEEEE
T ss_pred CCCeEEEEeCcccCCCCCC-ceeEEEEeccCCcccccc-CHHHHHHHHhhcCCCCEEe
Confidence 3578999999999998755 8999999642 1221 3457888899999999886
No 220
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=70.55 E-value=13 Score=33.26 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=33.5
Q ss_pred cCCCeEEEeccCCCCCCCCCceeEEEecCccCCCChHHHHHHHHHhccCCcEEE
Q 022285 39 CDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTIL 92 (299)
Q Consensus 39 ~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~ 92 (299)
...++....+|...++- ...||.|+...... ...+|..+.+++|+||.+.
T Consensus 150 v~~~i~~~~~D~~~~~~-~~~~drvim~lp~~---~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 150 VENRIEVINGDAREFLP-EGKFDRVIMNLPES---SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -TTTEEEEES-GGG----TT-EEEEEE--TSS---GGGGHHHHHHHEEEEEEEE
T ss_pred CCCeEEEEcCCHHHhcC-ccccCEEEECChHH---HHHHHHHHHHHhcCCcEEE
Confidence 34578889999988865 88999999986422 2357888999999999875
No 221
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=69.75 E-value=5.7 Score=38.96 Aligned_cols=73 Identities=15% Similarity=0.074 Sum_probs=51.0
Q ss_pred cChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCCCCCCceeEEEecCccCCCChHHHHHHHHHhccCCcEEEEE
Q 022285 19 LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIY 94 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~ 94 (299)
|+..|+.+...+.++++++.. ..++.+..+|+..+......||+|+..- . .. +..++....+.+++||.+++.
T Consensus 84 V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-Gs-~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 84 VTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-GS-PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C-CC-cHHHHHHHHHHhcCCCEEEEE
Confidence 455677777777777766432 3456688888876432145799999864 2 22 356788878889999999998
No 222
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=68.84 E-value=11 Score=36.56 Aligned_cols=54 Identities=20% Similarity=0.313 Sum_probs=41.6
Q ss_pred CCeEEEeccCCCCCCCCCceeEEEecCccCCCC---hHHHHHHHHHhccCCcEEEEEecC
Q 022285 41 PQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIYKKL 97 (299)
Q Consensus 41 ~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~ 97 (299)
+.|..+.+|+-+- .|. -|+|+.-+.+|++. --.+|+.++..|+|||.+++.+..
T Consensus 221 ~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V 277 (342)
T KOG3178|consen 221 PGVEHVAGDMFQD-TPK--GDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENV 277 (342)
T ss_pred CCcceeccccccc-CCC--cCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 4577777766533 333 35899989888877 357999999999999999999874
No 223
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=68.79 E-value=11 Score=37.16 Aligned_cols=78 Identities=18% Similarity=0.183 Sum_probs=48.0
Q ss_pred cCCCCCCCCCceeEEEecCccCCCC--hHHH-------------------------------------HHHHHHhccCCc
Q 022285 49 SLSQLPVESFSIDTVLSISSSHELP--GDQL-------------------------------------LEEISRVLKPGG 89 (299)
Q Consensus 49 d~~~Lp~~~~sfD~Vls~~~~~~~~--~~~~-------------------------------------L~ei~RvLKPGG 89 (299)
+...==||++|.+++++.+++||+. +..+ |+-=++-|.|||
T Consensus 152 SFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG 231 (386)
T PLN02668 152 SFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGG 231 (386)
T ss_pred cccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 4443348899999999999999986 3221 111234588999
Q ss_pred EEEEEecCCCCccc-----hHHH----HHHHHHHHHHCCceeceee
Q 022285 90 TILIYKKLTSDKGD-----VDKA----ISALEGKLLLAGFLDAQRI 126 (299)
Q Consensus 90 ~l~i~~~~~~~~g~-----~~~~----~~~l~~~L~laGFv~v~~~ 126 (299)
++++...+....+. .... ....-..|..-|.++.+..
T Consensus 232 ~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~ 277 (386)
T PLN02668 232 AMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKR 277 (386)
T ss_pred EEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 99998765422111 1112 2233456777888876543
No 224
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=68.61 E-value=22 Score=29.69 Aligned_cols=69 Identities=17% Similarity=0.169 Sum_probs=49.8
Q ss_pred CCceeEEEecCccCCCChHHHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCceeceeec
Q 022285 57 SFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQ 127 (299)
Q Consensus 57 ~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~~ 127 (299)
+..+|+|+..+-----.....|--+.+.|..+|.+++..+..+..+.... +.+......+|++......
T Consensus 43 ddvvD~vllWwR~~DgDL~D~LvDa~~~L~d~G~IWvltPK~gr~g~V~~--~~I~eaA~taGL~~t~~~~ 111 (127)
T PF11253_consen 43 DDVVDVVLLWWRDDDGDLVDALVDARTNLADDGVIWVLTPKAGRPGHVEP--SDIREAAPTAGLVQTKSCA 111 (127)
T ss_pred cccccEEEEEEECCcchHHHHHHHHHhhhcCCCEEEEEccCCCCCCCCCH--HHHHHHHhhcCCeeeeeec
Confidence 56788888765322223456777889999999999999988765554332 3677889999999876543
No 225
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=66.11 E-value=12 Score=35.52 Aligned_cols=64 Identities=14% Similarity=0.157 Sum_probs=40.3
Q ss_pred CCceeEEEecCccCCCChHHHHHHHHHhccCCcEEEEEecCC---CCccchHHHHHHHHHHHHHCCceece
Q 022285 57 SFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLT---SDKGDVDKAISALEGKLLLAGFLDAQ 124 (299)
Q Consensus 57 ~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~---~~~g~~~~~~~~l~~~L~laGFv~v~ 124 (299)
.+-||+|+..+...++-.+ ++.++++|+|.|++....- -..+....-...+...+..+||..+.
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p----~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKP----ELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPVT 286 (289)
T ss_pred cCCCCEEEEhhhhHhhcch----HHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCcccc
Confidence 4569999987654433321 3888999999998775421 11111222234677788999998654
No 226
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=62.68 E-value=25 Score=33.76 Aligned_cols=81 Identities=16% Similarity=0.180 Sum_probs=44.6
Q ss_pred eccCCCCCCCCCceeEEEecCccCCCC--h----H-------------------HH---------------HHHHHHhcc
Q 022285 47 ASSLSQLPVESFSIDTVLSISSSHELP--G----D-------------------QL---------------LEEISRVLK 86 (299)
Q Consensus 47 ~gd~~~Lp~~~~sfD~Vls~~~~~~~~--~----~-------------------~~---------------L~ei~RvLK 86 (299)
-++...==||++|.|++++.+++||+. + . .+ |+-=++-|+
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv 174 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELV 174 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheec
Confidence 456665558999999999999999875 2 1 11 111124578
Q ss_pred CCcEEEEEecCCCCc-------cchHHHHHHHHHHHHHCCceeceeec
Q 022285 87 PGGTILIYKKLTSDK-------GDVDKAISALEGKLLLAGFLDAQRIQ 127 (299)
Q Consensus 87 PGG~l~i~~~~~~~~-------g~~~~~~~~l~~~L~laGFv~v~~~~ 127 (299)
|||++++...+.... ...-......-..|..-|.++.+..+
T Consensus 175 ~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~d 222 (334)
T PF03492_consen 175 PGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVD 222 (334)
T ss_dssp EEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCC
T ss_pred cCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhh
Confidence 999999887654321 11112334445678888988766543
No 227
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=62.68 E-value=13 Score=35.94 Aligned_cols=76 Identities=17% Similarity=0.183 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCC---CCCCceeEEEecCc------c------CCC--C--------
Q 022285 20 PVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP---VESFSIDTVLSISS------S------HEL--P-------- 73 (299)
Q Consensus 20 t~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp---~~~~sfD~Vls~~~------~------~~~--~-------- 73 (299)
...|++..-++..+.++.+. ..++.....|...++ ...+.||.|+.-.. + .|. +
T Consensus 186 ~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~ 265 (355)
T COG0144 186 VAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAK 265 (355)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHH
Confidence 33444444444445555554 345666666665443 22235999997431 1 111 1
Q ss_pred -hHHHHHHHHHhccCCcEEEEEe
Q 022285 74 -GDQLLEEISRVLKPGGTILIYK 95 (299)
Q Consensus 74 -~~~~L~ei~RvLKPGG~l~i~~ 95 (299)
..++|....++|||||.|+..+
T Consensus 266 lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 266 LQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEc
Confidence 1468889999999999998664
No 228
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=61.90 E-value=12 Score=36.34 Aligned_cols=53 Identities=21% Similarity=0.197 Sum_probs=39.9
Q ss_pred CCCeEEEeccCCCCCCCCCceeEEEecCccCCCC----hHHHHHHHHHhccCCcEEE
Q 022285 40 DPQIITQASSLSQLPVESFSIDTVLSISSSHELP----GDQLLEEISRVLKPGGTIL 92 (299)
Q Consensus 40 ~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~----~~~~L~ei~RvLKPGG~l~ 92 (299)
...|+++.|.++.+-+|-..+|+|++-+.-.++. ...+|-.=-+.|+|||.++
T Consensus 108 ~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 108 EDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred cceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 3468889999998878788999999987433322 3455555668999999986
No 229
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=61.34 E-value=5.8 Score=34.78 Aligned_cols=93 Identities=15% Similarity=0.068 Sum_probs=55.6
Q ss_pred ccceEEEEecCCccC-------------hHHHHHHHHHHHHHHhhhcC--CCeEEEeccCC-CC---CCCCCceeEEEec
Q 022285 6 MQSAVLALSEDKILP-------------VSAVLNAIRDLGDEAVEQCD--PQIITQASSLS-QL---PVESFSIDTVLSI 66 (299)
Q Consensus 6 ~~~~vLlL~~~~~vt-------------~~dlse~m~~~A~~~~~~~~--~~i~~~~gd~~-~L---p~~~~sfD~Vls~ 66 (299)
.|.+||-|..|+-.= ..|......+..+++++... ..+..+..|.. .+ ......||+|+.-
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 366788887766532 23444555666666665542 34677777643 22 2246899999998
Q ss_pred CccCCCC-hHHHHHHHH--HhccCCcEEEEEecCC
Q 022285 67 SSSHELP-GDQLLEEIS--RVLKPGGTILIYKKLT 98 (299)
Q Consensus 67 ~~~~~~~-~~~~L~ei~--RvLKPGG~l~i~~~~~ 98 (299)
-.+..-. ...++..+. .+|+++|.+++.....
T Consensus 122 PPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 122 PPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp -STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 7665543 266777777 7999999888776543
No 230
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=60.24 E-value=17 Score=35.83 Aligned_cols=76 Identities=14% Similarity=0.046 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHHhhhc--CCCeEEEeccCCCCCCCCCceeEEEecCccCC-CC----hHHHHHH----HHHhccCCc
Q 022285 21 VSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHE-LP----GDQLLEE----ISRVLKPGG 89 (299)
Q Consensus 21 ~~dlse~m~~~A~~~~~~~--~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~-~~----~~~~L~e----i~RvLKPGG 89 (299)
..|+-..|++.|+.|+... ...|.|.++|+..++-+-..+|+|+++...-. +. ...++.+ +.+.++--+
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws 338 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWS 338 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCc
Confidence 4567788999998877554 67899999999988644479999999975321 11 1223444 445555666
Q ss_pred EEEEEec
Q 022285 90 TILIYKK 96 (299)
Q Consensus 90 ~l~i~~~ 96 (299)
.+++...
T Consensus 339 ~~v~tt~ 345 (381)
T COG0116 339 RYVFTTS 345 (381)
T ss_pred eEEEEcc
Confidence 6666543
No 231
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=59.11 E-value=17 Score=35.98 Aligned_cols=113 Identities=16% Similarity=0.136 Sum_probs=71.5
Q ss_pred ceEEEEecCCcc--------------ChHHHHHHHHHHHHHHh------hh--cCCCeEEEeccCCCC-CCCCCceeEEE
Q 022285 8 SAVLALSEDKIL--------------PVSAVLNAIRDLGDEAV------EQ--CDPQIITQASSLSQL-PVESFSIDTVL 64 (299)
Q Consensus 8 ~~vLlL~~~~~v--------------t~~dlse~m~~~A~~~~------~~--~~~~i~~~~gd~~~L-p~~~~sfD~Vl 64 (299)
-+||+|-.|-.+ +..|+=++|++.++++. +. .+++++.+..|+-++ --..+.||.|+
T Consensus 291 ~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vI 370 (508)
T COG4262 291 RSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVI 370 (508)
T ss_pred ceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEE
Confidence 357777654433 34456678888887431 11 268899888877654 23356899999
Q ss_pred ecCccC------CCChHHHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCceec
Q 022285 65 SISSSH------ELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA 123 (299)
Q Consensus 65 s~~~~~------~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v 123 (299)
.-..-- .+...+++.-+.|.|+++|.++++-...=. .+..-| .+...++-|||...
T Consensus 371 VDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~--tp~vfw-~i~aTik~AG~~~~ 432 (508)
T COG4262 371 VDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYF--TPRVFW-RIDATIKSAGYRVW 432 (508)
T ss_pred EeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCcc--CCceee-eehhHHHhCcceee
Confidence 865322 222467888999999999999987542110 011111 34567899998754
No 232
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=56.50 E-value=15 Score=33.50 Aligned_cols=66 Identities=8% Similarity=0.065 Sum_probs=42.5
Q ss_pred cChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCcee---EEEecCccCCCChHHHHHHHHHhccCCcEE
Q 022285 19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSID---TVLSISSSHELPGDQLLEEISRVLKPGGTI 91 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD---~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l 91 (299)
++..|..+.|...++.+... ..++.++.+|+..++++ .|| .|+++..++. ...++.++.. .+++..
T Consensus 54 v~~iE~d~~~~~~l~~~~~~-~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlPy~i--~~~il~~ll~--~~~~~~ 122 (253)
T TIGR00755 54 VTAIEIDPRLAEILRKLLSL-YERLEVIEGDALKVDLP--DFPKQLKVVSNLPYNI--SSPLIFKLLE--KPKFRL 122 (253)
T ss_pred EEEEECCHHHHHHHHHHhCc-CCcEEEEECchhcCChh--HcCCcceEEEcCChhh--HHHHHHHHhc--cCCCce
Confidence 34457777888887765433 57899999999998876 577 7777765442 2344444444 454443
No 233
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=55.90 E-value=7.4 Score=33.70 Aligned_cols=24 Identities=46% Similarity=0.738 Sum_probs=19.8
Q ss_pred hHHHHHHHHHhccCCcEEEEEecC
Q 022285 74 GDQLLEEISRVLKPGGTILIYKKL 97 (299)
Q Consensus 74 ~~~~L~ei~RvLKPGG~l~i~~~~ 97 (299)
....+.+++|+|||||.+++....
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~ 58 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDD 58 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-C
T ss_pred HHHHHHHHHhhcCCCeeEEEEecc
Confidence 367899999999999999887543
No 234
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=55.24 E-value=66 Score=31.26 Aligned_cols=114 Identities=13% Similarity=0.137 Sum_probs=71.2
Q ss_pred cccccceEEEEecCCc-------------cChHHHHHHHHHHHHHHh--hhcCCCeEEEeccCCCCCCCCCceeEEEecC
Q 022285 3 TGKMQSAVLALSEDKI-------------LPVSAVLNAIRDLGDEAV--EQCDPQIITQASSLSQLPVESFSIDTVLSIS 67 (299)
Q Consensus 3 ~~~~~~~vLlL~~~~~-------------vt~~dlse~m~~~A~~~~--~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~ 67 (299)
.++.|.+||-...|.. |...|+.+.-....++++ .+....+..+.||...++..-..||.|+.++
T Consensus 185 ~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~ 264 (341)
T COG2520 185 LVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL 264 (341)
T ss_pred hhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC
Confidence 3455777777665321 223344444444444433 2334458899999998887668999999987
Q ss_pred ccCCCChHHHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCc
Q 022285 68 SSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF 120 (299)
Q Consensus 68 ~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGF 120 (299)
... ...++....+.|++||.+.+++..+..... ......+.......|+
T Consensus 265 p~~---a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~-~~~~~~i~~~~~~~~~ 313 (341)
T COG2520 265 PKS---AHEFLPLALELLKDGGIIHYYEFVPEDDIE-ERPEKRIKSAARKGGY 313 (341)
T ss_pred CCc---chhhHHHHHHHhhcCcEEEEEeccchhhcc-cchHHHHHHHHhhccC
Confidence 421 245778889999999999999887543221 0112345555566665
No 235
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=53.24 E-value=60 Score=30.99 Aligned_cols=81 Identities=21% Similarity=0.140 Sum_probs=52.6
Q ss_pred CCccChHHHHHHHHHHHHHHhhhc--CCCeEEEe----ccCC-CCCCCCCceeEEEecCccC--------------CCC-
Q 022285 16 DKILPVSAVLNAIRDLGDEAVEQC--DPQIITQA----SSLS-QLPVESFSIDTVLSISSSH--------------ELP- 73 (299)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~~~--~~~i~~~~----gd~~-~Lp~~~~sfD~Vls~~~~~--------------~~~- 73 (299)
+..+|..|++...+..|.+|+... ..++..+. ++.. ..++..+.+|+++++-.+. +-+
T Consensus 172 ~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~ 251 (328)
T KOG2904|consen 172 QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPK 251 (328)
T ss_pred CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCch
Confidence 556778899999999988776543 44555552 2222 3346678999999985311 001
Q ss_pred ------------hHHHHHHHHHhccCCcEEEEEec
Q 022285 74 ------------GDQLLEEISRVLKPGGTILIYKK 96 (299)
Q Consensus 74 ------------~~~~L~ei~RvLKPGG~l~i~~~ 96 (299)
...++.-+-|.|+|||.+.+...
T Consensus 252 lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 252 LALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred hhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 02345557789999999887655
No 236
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=52.16 E-value=5.5 Score=22.72 Aligned_cols=11 Identities=18% Similarity=0.489 Sum_probs=7.2
Q ss_pred hccCCCCCCCC
Q 022285 244 WRCFPLRYMPL 254 (299)
Q Consensus 244 FRC~~CPYlGl 254 (299)
|||.-|+|...
T Consensus 1 y~C~~C~y~t~ 11 (24)
T PF13909_consen 1 YKCPHCSYSTS 11 (24)
T ss_dssp EE-SSSS-EES
T ss_pred CCCCCCCCcCC
Confidence 79999999753
No 237
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=51.71 E-value=6.6 Score=35.67 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=22.2
Q ss_pred hhccCCCCCCCCCCCCCCCCCCCCcEEee
Q 022285 243 TWRCFPLRYMPLQGSASIQTGREGVTVKQ 271 (299)
Q Consensus 243 AFRC~~CPYlGlPaFkp~~~~~~~~~~~~ 271 (299)
||-|.+|.|+|.| |+|- -..||+.|.+
T Consensus 16 ~~~~~~c~~~~~~-~~~~-~v~eGe~v~L 42 (227)
T PHA02826 16 AFLCLYCKYRGGD-LTPV-YAKFGDPMVL 42 (227)
T ss_pred HHhhccchhhCcC-cceE-EecCCCCEEE
Confidence 9999999999999 7764 4568887765
No 238
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=50.36 E-value=6 Score=30.65 Aligned_cols=55 Identities=18% Similarity=0.197 Sum_probs=35.2
Q ss_pred CCCeEEEeccCCCC--CCCCCceeEEEecCccCCCC-hHHHHHHHHHhccCCcEEEEEe
Q 022285 40 DPQIITQASSLSQL--PVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYK 95 (299)
Q Consensus 40 ~~~i~~~~gd~~~L--p~~~~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~ 95 (299)
..++.++.++.... .++...||+|+.-. .|..+ ....+..+.+.|+|||.+++.+
T Consensus 48 ~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 48 SDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DHSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -BTEEEEES-THHHHHHHHH--EEEEEEES----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 45789998876533 23357899999865 33333 4567888999999999998754
No 239
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=50.26 E-value=34 Score=33.55 Aligned_cols=65 Identities=12% Similarity=0.213 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhh--cCCCeEEEeccCCCCCCCCCceeEEEecCc-cCCCC---hHHHHHHHHHhccCCcEEE
Q 022285 26 NAIRDLGDEAVEQ--CDPQIITQASSLSQLPVESFSIDTVLSISS-SHELP---GDQLLEEISRVLKPGGTIL 92 (299)
Q Consensus 26 e~m~~~A~~~~~~--~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~-~~~~~---~~~~L~ei~RvLKPGG~l~ 92 (299)
.+|-..|++.++. ...+|.++.|.++.+.+| +..|+|++--. ...++ .+. +-...|.|||.|..+
T Consensus 209 S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~mL~NERMLEs-Yl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 209 SEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGYMLVNERMLES-YLHARKWLKPNGKMF 279 (517)
T ss_pred hHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchhhhhhHHHHHH-HHHHHhhcCCCCccc
Confidence 3677778775543 256888999999988875 47999998642 22222 222 334669999999987
No 240
>TIGR01053 LSD1 zinc finger domain, LSD1 subclass. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC
Probab=50.13 E-value=7.4 Score=24.43 Aligned_cols=15 Identities=27% Similarity=0.532 Sum_probs=11.1
Q ss_pred CCCcchh---------hhccCCCC
Q 022285 236 ACGSVMW---------TWRCFPLR 250 (299)
Q Consensus 236 sCGsC~L---------AFRC~~CP 250 (299)
-||+|.- .|||+.|-
T Consensus 3 ~C~~C~t~L~yP~gA~~vrCs~C~ 26 (31)
T TIGR01053 3 VCGGCRTLLMYPRGASSVRCALCQ 26 (31)
T ss_pred CcCCCCcEeecCCCCCeEECCCCC
Confidence 3677753 89999994
No 241
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=46.12 E-value=51 Score=28.80 Aligned_cols=71 Identities=24% Similarity=0.253 Sum_probs=33.3
Q ss_pred HHHHHHHHHhccCCcEEEEEecCCCC-ccchH----HHHHHHHHHHHHCCceeceeecccccC-ccceeeeeeeecCCCC
Q 022285 75 DQLLEEISRVLKPGGTILIYKKLTSD-KGDVD----KAISALEGKLLLAGFLDAQRIQLKSVV-PAEVVSFGVKGKKPTW 148 (299)
Q Consensus 75 ~~~L~ei~RvLKPGG~l~i~~~~~~~-~g~~~----~~~~~l~~~L~laGFv~v~~~~~kp~~-~~~~~~~~i~a~KP~~ 148 (299)
..++.-+++.|.|||+|+|.-..+.. ...+. .....+-..|..+||+-.... .-|.. ..+ ...+.|.||--
T Consensus 66 ~~l~~~~~~~l~pg~~lfVeY~~D~eT~~~L~~G~pp~~TrLG~~Ll~~GFtwfKdW-YfPEG~~EG--g~KlQa~Kpl~ 142 (170)
T PF06557_consen 66 DELYKLFSRYLEPGGRLFVEYVEDRETRRQLQRGVPPAETRLGFSLLKAGFTWFKDW-YFPEGGMEG--GPKLQAEKPLN 142 (170)
T ss_dssp HHHHHHHHTT----SEEEEE-TT-HHHHHHHHTT--GGGSHHHHHHHTTT--EEEEE-E--TTTSTT---EEEEEE--SS
T ss_pred HHHHHHHHHHhhhcCeEEEEEecCHHHHHHHHcCCCcccchhHHHHHhCCcEEEeee-eccCccccC--CceeeeecCCC
Confidence 56888899999999999988654321 00000 011246678999999976543 22211 111 23567777753
No 242
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=45.57 E-value=31 Score=32.09 Aligned_cols=57 Identities=21% Similarity=0.199 Sum_probs=39.3
Q ss_pred CCeEEEeccCCCC--------CCCCCceeEEEecC-----ccCCCC-------hHHHHHHHHHhccCCcEEEEEecC
Q 022285 41 PQIITQASSLSQL--------PVESFSIDTVLSIS-----SSHELP-------GDQLLEEISRVLKPGGTILIYKKL 97 (299)
Q Consensus 41 ~~i~~~~gd~~~L--------p~~~~sfD~Vls~~-----~~~~~~-------~~~~L~ei~RvLKPGG~l~i~~~~ 97 (299)
+.|..+++|+.+. .|..+..|+|++-- .+|.+. .-.+|+-..++|||||.|+-....
T Consensus 89 ~GV~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifR 165 (294)
T KOG1099|consen 89 EGVIQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFR 165 (294)
T ss_pred CceEEeecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhc
Confidence 3556667777654 46667889999853 466554 135667788999999999855443
No 243
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=43.63 E-value=91 Score=28.12 Aligned_cols=59 Identities=24% Similarity=0.282 Sum_probs=39.9
Q ss_pred CCCeEEEeccCCCC--------CCCCCceeEEEecCc----cCC-CC-------hHHHHHHHHHhccCCcEEEEEecCC
Q 022285 40 DPQIITQASSLSQL--------PVESFSIDTVLSISS----SHE-LP-------GDQLLEEISRVLKPGGTILIYKKLT 98 (299)
Q Consensus 40 ~~~i~~~~gd~~~L--------p~~~~sfD~Vls~~~----~~~-~~-------~~~~L~ei~RvLKPGG~l~i~~~~~ 98 (299)
.+++.++++|+..- -+....+|+|++-.+ -+| .+ -..++.-...+|+|||.|++.....
T Consensus 84 ~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 84 IPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred CCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 46788998887643 234555799997542 111 11 1456666778999999999888765
No 244
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=42.69 E-value=11 Score=34.83 Aligned_cols=61 Identities=7% Similarity=0.047 Sum_probs=43.1
Q ss_pred ccceEEEEecCC------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCc
Q 022285 6 MQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISS 68 (299)
Q Consensus 6 ~~~~vLlL~~~~------------~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~ 68 (299)
.|++||-+-.|+ .++..|+.+.|.+.++++... .++.++.+|+..+++++-.++.|+++..
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~--~~v~~i~~D~~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE--DNLTIIEGDALKVDLSELQPLKVVANLP 114 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc--CceEEEEChhhcCCHHHcCcceEEEeCC
Confidence 345666665442 345667788899988765432 6899999999999876533688888764
No 245
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=41.87 E-value=13 Score=25.81 Aligned_cols=9 Identities=33% Similarity=0.947 Sum_probs=5.2
Q ss_pred hhccCCCCC
Q 022285 243 TWRCFPLRY 251 (299)
Q Consensus 243 AFRC~~CPY 251 (299)
.|+|..|+|
T Consensus 37 r~~C~~Cgy 45 (50)
T PRK00432 37 RWHCGKCGY 45 (50)
T ss_pred cEECCCcCC
Confidence 555666655
No 246
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=37.99 E-value=1.1e+02 Score=29.61 Aligned_cols=56 Identities=13% Similarity=0.095 Sum_probs=41.4
Q ss_pred CCCeEEEeccCCCC--CCCCCceeEEEecCccCCCC-----hHHHHHHHHHhccCCcEEEEEe
Q 022285 40 DPQIITQASSLSQL--PVESFSIDTVLSISSSHELP-----GDQLLEEISRVLKPGGTILIYK 95 (299)
Q Consensus 40 ~~~i~~~~gd~~~L--p~~~~sfD~Vls~~~~~~~~-----~~~~L~ei~RvLKPGG~l~i~~ 95 (299)
++++....||.-.+ -++.+.||+|+.-..-.--+ ....++-+.+.||+||.+....
T Consensus 174 ~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 174 GKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred CCceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 67888888877644 24578999999866433223 2567888999999999998664
No 247
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=37.77 E-value=76 Score=30.71 Aligned_cols=83 Identities=11% Similarity=0.083 Sum_probs=53.0
Q ss_pred eEEEEecCCc------------cChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCC-C-CC--------------CCc
Q 022285 9 AVLALSEDKI------------LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQL-P-VE--------------SFS 59 (299)
Q Consensus 9 ~vLlL~~~~~------------vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~L-p-~~--------------~~s 59 (299)
+||-|..|+- ++..|.+..|++.|++++... ..++.+..+|+..+ + +. ...
T Consensus 209 ~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~ 288 (362)
T PRK05031 209 DLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYN 288 (362)
T ss_pred eEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccCCC
Confidence 5676666543 445677888999988876443 34899999988753 1 11 225
Q ss_pred eeEEEecCccCCCChHHHHHHHHHhccCCcEEEEEe
Q 022285 60 IDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 95 (299)
Q Consensus 60 fD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~ 95 (299)
||+|+.--.-..+. ..+++.+.+ |++.+++.-
T Consensus 289 ~D~v~lDPPR~G~~-~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 289 FSTIFVDPPRAGLD-DETLKLVQA---YERILYISC 320 (362)
T ss_pred CCEEEECCCCCCCc-HHHHHHHHc---cCCEEEEEe
Confidence 89999876532222 455555544 777777664
No 248
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=37.67 E-value=35 Score=33.45 Aligned_cols=74 Identities=7% Similarity=-0.027 Sum_probs=49.9
Q ss_pred cChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCCC-CCCceeEEEecCccCCCChHHHHHHHHHhccCCcEEEEEe
Q 022285 19 LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPV-ESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 95 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp~-~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~ 95 (299)
|+..|+.....+.++++++.. ..++.+..+|+..+-. ....||+|..-- + .. +..++..+.+.+++||.|+++-
T Consensus 72 Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f-Gs-~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 72 VFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F-GT-PAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-CC-cHHHHHHHHHhcccCCEEEEEe
Confidence 445566666666666655432 2357788888775521 135799998854 2 22 3578999999999999999884
No 249
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=37.40 E-value=3.6e+02 Score=25.45 Aligned_cols=117 Identities=17% Similarity=0.150 Sum_probs=60.8
Q ss_pred cccccceEEEEecCCccC---hHHHHH----------------HHHHHHHHHhhhcCCCeEEEeccCCCCCCC----CCc
Q 022285 3 TGKMQSAVLALSEDKILP---VSAVLN----------------AIRDLGDEAVEQCDPQIITQASSLSQLPVE----SFS 59 (299)
Q Consensus 3 ~~~~~~~vLlL~~~~~vt---~~dlse----------------~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~----~~s 59 (299)
++|-|..||+|-..+-+| +.|++- .++..|. .-+||.-+.-|+.. |.. -..
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk-----kRtNiiPIiEDArh-P~KYRmlVgm 226 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK-----KRTNIIPIIEDARH-PAKYRMLVGM 226 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhh-----ccCCceeeeccCCC-chheeeeeee
Confidence 467788999996655444 444431 2233332 23566666656542 321 125
Q ss_pred eeEEEecCccCCCChHHHHHHHHHhccCCcEEEEEecCCCCccc--hHHHHHHHHHHHHHCCceeceee
Q 022285 60 IDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGD--VDKAISALEGKLLLAGFLDAQRI 126 (299)
Q Consensus 60 fD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~--~~~~~~~l~~~L~laGFv~v~~~ 126 (299)
.|+|++-..-. .....+.-...-.||+||.|+|....+..... ....++.-.+.|...-|.-.+..
T Consensus 227 VDvIFaDvaqp-dq~RivaLNA~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqee~lkP~Eqv 294 (317)
T KOG1596|consen 227 VDVIFADVAQP-DQARIVALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQEEQLKPKEQV 294 (317)
T ss_pred EEEEeccCCCc-hhhhhhhhhhhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHhccCchhee
Confidence 67777654211 11233444577789999999988665332211 11223333345555555544433
No 250
>PF05566 Pox_vIL-18BP: Orthopoxvirus interleukin 18 binding protein; InterPro: IPR008791 Interleukin-18 (IL-18) is a proinflammatory cytokine that plays a key role in the activation of natural killer and T helper 1 cell responses principally by inducing interferon-gamma (IFN-gamma). Several poxvirus genes encode proteins with sequence similarity to IL-18BPs. It has been shown that vaccinia, ectromelia and cowpox viruses secrete from infected cells a soluble IL-18BP (vIL-18BP) that may modulate the host antiviral response. The expression of vIL-18BPs by distinct poxvirus genera that cause local or general viral dissemination, or persistent or acute infections in the host, emphasises the importance of IL-18 in response to viral infections [].; PDB: 3F62_A.
Probab=37.05 E-value=8.5 Score=31.35 Aligned_cols=13 Identities=15% Similarity=0.493 Sum_probs=10.2
Q ss_pred hhccCCC-CCCCCCCC
Q 022285 243 TWRCFPL-RYMPLQGS 257 (299)
Q Consensus 243 AFRC~~C-PYlGlPaF 257 (299)
-|||+|| -| ||-|
T Consensus 36 ~fhCsGcv~~--~peF 49 (126)
T PF05566_consen 36 EFHCSGCVKY--MPEF 49 (126)
T ss_dssp EEEEEEEE-S--STTS
T ss_pred eEEEechhhh--Cccc
Confidence 6999999 77 6777
No 251
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=37.03 E-value=14 Score=29.52 Aligned_cols=10 Identities=20% Similarity=0.620 Sum_probs=9.3
Q ss_pred hhccCCCCCC
Q 022285 243 TWRCFPLRYM 252 (299)
Q Consensus 243 AFRC~~CPYl 252 (299)
+|-|.+|||.
T Consensus 21 rf~C~tCpY~ 30 (105)
T KOG2906|consen 21 RFSCRTCPYV 30 (105)
T ss_pred eEEcCCCCce
Confidence 7999999996
No 252
>PHA01519 hypothetical protein
Probab=36.82 E-value=18 Score=29.44 Aligned_cols=20 Identities=10% Similarity=0.042 Sum_probs=16.0
Q ss_pred CCCCCCCCCCCCCCCCCcEE
Q 022285 250 RYMPLQGSASIQTGREGVTV 269 (299)
Q Consensus 250 PYlGlPaFkp~~~~~~~~~~ 269 (299)
+..|+|+|||+..|.-|..+
T Consensus 21 ~~~g~~~~~~~~~g~~~~~w 40 (115)
T PHA01519 21 IFKGLWACKPETSGNNTNKW 40 (115)
T ss_pred HhccCccccccccccCCCcc
Confidence 46799999999998865554
No 253
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=36.38 E-value=97 Score=29.61 Aligned_cols=38 Identities=26% Similarity=0.430 Sum_probs=31.2
Q ss_pred ceeEEEecCccCCCChHHHHHHHHHhccCCcEEEEEec
Q 022285 59 SIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK 96 (299)
Q Consensus 59 sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~ 96 (299)
.||+|+....-+.-..+..|.++++.|.|||.+++.-.
T Consensus 37 ~~d~~l~~~pK~~~e~e~qLa~ll~~~~~g~~i~v~g~ 74 (300)
T COG2813 37 DFDAVLLYWPKHKAEAEFQLAQLLARLPPGGEIVVVGE 74 (300)
T ss_pred CCCEEEEEccCchHHHHHHHHHHHhhCCCCCeEEEEec
Confidence 79999988765554467788999999999999988743
No 254
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=35.70 E-value=45 Score=32.19 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=30.5
Q ss_pred CceeEEEecCccCCCChHHHHHHHHHhccCCcEEEEEecC
Q 022285 58 FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL 97 (299)
Q Consensus 58 ~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~ 97 (299)
..||.|+....-..-..+..|..+.+.|+|||.+++.-..
T Consensus 75 ~~~d~~~~~~pk~k~~~~~~l~~~~~~l~~g~~i~~~G~~ 114 (342)
T PRK09489 75 ADCDTLIYYWPKNKQEAQFQLMNLLSLLPVGTDIFVVGEN 114 (342)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEEEEec
Confidence 5799998876433323467889999999999999887543
No 255
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=35.59 E-value=97 Score=24.53 Aligned_cols=76 Identities=16% Similarity=0.067 Sum_probs=51.0
Q ss_pred eEEEEecCCccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCChHHHHHHHHHhccCC
Q 022285 9 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPG 88 (299)
Q Consensus 9 ~vLlL~~~~~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPG 88 (299)
+||++-. +..|..=+++.|.+.++++ ...+++.+.+..+++-.-+.||+|+...-. .-.+.++...+.+-
T Consensus 2 ~Ill~C~-~GaSSs~la~km~~~a~~~----gi~~~i~a~~~~e~~~~~~~~Dvill~PQv-----~~~~~~i~~~~~~~ 71 (99)
T cd05565 2 NVLVLCA-GGGTSGLLANALNKGAKER----GVPLEAAAGAYGSHYDMIPDYDLVILAPQM-----ASYYDELKKDTDRL 71 (99)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHC----CCcEEEEEeeHHHHHHhccCCCEEEEcChH-----HHHHHHHHHHhhhc
Confidence 4777764 4478788888888887642 335666666666666556678988876422 23567788888887
Q ss_pred cEEEEE
Q 022285 89 GTILIY 94 (299)
Q Consensus 89 G~l~i~ 94 (299)
|.-+..
T Consensus 72 ~ipv~~ 77 (99)
T cd05565 72 GIKLVT 77 (99)
T ss_pred CCCEEE
Confidence 775533
No 256
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=34.38 E-value=80 Score=26.76 Aligned_cols=45 Identities=24% Similarity=0.403 Sum_probs=30.5
Q ss_pred EEeccCCCCCCCC-CceeEEEecCccCCCChHHHHHHHHHhccCCcEEEEEec
Q 022285 45 TQASSLSQLPVES-FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK 96 (299)
Q Consensus 45 ~~~gd~~~Lp~~~-~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~ 96 (299)
.+.++-...+.+. ..+|++++.. ...+.....-|+|||.+++...
T Consensus 42 vris~~~~~~~~~~~~~Dilv~l~-------~~~~~~~~~~l~~~g~vi~ns~ 87 (173)
T PF01558_consen 42 VRISDEPIIPSPPVGEADILVALD-------PEALERHLKGLKPGGVVIINSS 87 (173)
T ss_dssp EEEESS--SSSS-TSSESEEEESS-------HHHHHHCGTTCETTEEEEEETT
T ss_pred EEEecCcCccCcccCCCCEEEEcC-------HHHHHHHhcCcCcCeEEEEECC
Confidence 3445541334344 7899999875 3566688889999999997764
No 257
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=34.00 E-value=1.4e+02 Score=28.70 Aligned_cols=53 Identities=9% Similarity=-0.002 Sum_probs=34.6
Q ss_pred cChHHHHHHHHHHHHHHhhhc---CCCeEEEe-ccCCCCC----CCCCceeEEEecCccCC
Q 022285 19 LPVSAVLNAIRDLGDEAVEQC---DPQIITQA-SSLSQLP----VESFSIDTVLSISSSHE 71 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~---~~~i~~~~-gd~~~Lp----~~~~sfD~Vls~~~~~~ 71 (299)
++..|+.+..++.|+.+++.- ..++.++. .+...+. .+.+.||+|+++-.++.
T Consensus 141 ~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~ 201 (321)
T PRK11727 141 FVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHA 201 (321)
T ss_pred EEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEeCCCCcC
Confidence 445688889999998877542 23566643 3332221 24678999999977654
No 258
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=33.95 E-value=1.7e+02 Score=27.21 Aligned_cols=73 Identities=19% Similarity=0.186 Sum_probs=46.8
Q ss_pred CCeEEEeccCC-CCCCCCC---ceeEEEecC-ccCCCC---hHHHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHH
Q 022285 41 PQIITQASSLS-QLPVESF---SIDTVLSIS-SSHELP---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALE 112 (299)
Q Consensus 41 ~~i~~~~gd~~-~Lp~~~~---sfD~Vls~~-~~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~ 112 (299)
..+....||+. .+|--+. .+|+++.-. +-..-| ...++.++++..+|||++.-. ....-++
T Consensus 146 ~~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFsP~kNP~mW~~e~l~~~a~~~~~~~~l~t~-----------ssA~~vR 214 (252)
T COG4121 146 LLLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFRPVKNPEMWEDELLNLMARIPYRDPTLATF-----------AAAIAVR 214 (252)
T ss_pred heeeeeeeehhhcCCcccccccCccEEecCCccccCChhhccHHHHHHHHhhcCCCCceech-----------HHHHHHH
Confidence 34555677774 3343333 688887532 111111 367999999999999999721 1223577
Q ss_pred HHHHHCCceece
Q 022285 113 GKLLLAGFLDAQ 124 (299)
Q Consensus 113 ~~L~laGFv~v~ 124 (299)
+.|..+||....
T Consensus 215 r~L~~aGF~v~~ 226 (252)
T COG4121 215 RRLEQAGFTVEK 226 (252)
T ss_pred HHHHHcCceeee
Confidence 899999999765
No 259
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=33.13 E-value=1.7e+02 Score=29.57 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=36.5
Q ss_pred CCCeEEEeccCCCCC---CCCCceeEEEecCc------------cCCC----------C-hHHHHHHHHHhccCCcEEEE
Q 022285 40 DPQIITQASSLSQLP---VESFSIDTVLSISS------------SHEL----------P-GDQLLEEISRVLKPGGTILI 93 (299)
Q Consensus 40 ~~~i~~~~gd~~~Lp---~~~~sfD~Vls~~~------------~~~~----------~-~~~~L~ei~RvLKPGG~l~i 93 (299)
..+.+....|...+| |+. +||.|+.-.. ..+. + ..++|-.....++|||.|+.
T Consensus 291 v~ntiv~n~D~~ef~~~~~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVY 369 (460)
T KOG1122|consen 291 VTNTIVSNYDGREFPEKEFPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVY 369 (460)
T ss_pred CCceEEEccCcccccccccCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEE
Confidence 456666666776655 555 8999986431 1111 1 25678888999999999986
Q ss_pred Ee
Q 022285 94 YK 95 (299)
Q Consensus 94 ~~ 95 (299)
..
T Consensus 370 ST 371 (460)
T KOG1122|consen 370 ST 371 (460)
T ss_pred Ee
Confidence 64
No 260
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=33.01 E-value=25 Score=33.23 Aligned_cols=52 Identities=2% Similarity=-0.085 Sum_probs=38.8
Q ss_pred cChHHHHHHHHHHHHHHhhhc--CCCeEEEeccCCCCCCCCCceeEEEecCccCCC
Q 022285 19 LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHEL 72 (299)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~--~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~ 72 (299)
++..|+.+.|...+++++... ..+++++.+|+...+++ .||.|+++..++..
T Consensus 61 V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~~d~VvaNlPY~Is 114 (294)
T PTZ00338 61 VIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--YFDVCVANVPYQIS 114 (294)
T ss_pred EEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--ccCEEEecCCcccC
Confidence 455677788888888766432 46899999999887654 68999988765543
No 261
>PF05484 LRV_FeS: LRV protein FeS4 cluster; InterPro: IPR008665 This iron sulphur cluster is found at the N terminus of some proteins containing leucine-repeat variant (LRV) repeats (IPR004830 from INTERPRO). These proteins have a two-domain structure, composed of a small N-terminal domain containing a cluster of four Cys residues that houses the 4Fe:4S cluster, and a larger C-terminal domain containing the LRV repeats []. Biochemical studies revealed that the 4Fe:4S cluster is sensitive to oxygen, but does not appear to have reversible redox activity.; PDB: 1LRV_A.
Probab=32.68 E-value=24 Score=25.33 Aligned_cols=14 Identities=14% Similarity=0.019 Sum_probs=8.8
Q ss_pred hhccCCCCCCCCCC
Q 022285 243 TWRCFPLRYMPLQG 256 (299)
Q Consensus 243 AFRC~~CPYlGlPa 256 (299)
+-.|++|||..+=+
T Consensus 11 ~vdC~~C~h~~ll~ 24 (57)
T PF05484_consen 11 PVDCAGCPHRDLLA 24 (57)
T ss_dssp ---TTTSTTCCCCT
T ss_pred CcCCCCCcchhhhh
Confidence 56899999996543
No 262
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=32.18 E-value=1.5e+02 Score=26.46 Aligned_cols=95 Identities=12% Similarity=0.038 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHHHhhhc--CCCeEEEeccCCCCCCCCCc-eeEEEe-cCccCCCChHHHHHHHHHhccCCcEEEEEec
Q 022285 21 VSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFS-IDTVLS-ISSSHELPGDQLLEEISRVLKPGGTILIYKK 96 (299)
Q Consensus 21 ~~dlse~m~~~A~~~~~~~--~~~i~~~~gd~~~Lp~~~~s-fD~Vls-~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~ 96 (299)
..|+++.-++.|++++++. ..++.++.+|..+ +++.+- .|.|+. ... ...-...|.+....++..-.|++...
T Consensus 26 a~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMG--G~lI~~ILe~~~~~~~~~~~lILqP~ 102 (205)
T PF04816_consen 26 AVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMG--GELIIEILEAGPEKLSSAKRLILQPN 102 (205)
T ss_dssp EEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEEE---HHHHHHHHHHTGGGGTT--EEEEEES
T ss_pred EEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEecCC--HHHHHHHHHhhHHHhccCCeEEEeCC
Confidence 4567777778888776553 5689999998643 233433 677664 332 11123566666666776667777654
Q ss_pred CCCCccchHHHHHHHHHHHHHCCceeceeec
Q 022285 97 LTSDKGDVDKAISALEGKLLLAGFLDAQRIQ 127 (299)
Q Consensus 97 ~~~~~g~~~~~~~~l~~~L~laGFv~v~~~~ 127 (299)
.. ...+++.|..+||.-+.+..
T Consensus 103 ~~---------~~~LR~~L~~~gf~I~~E~l 124 (205)
T PF04816_consen 103 TH---------AYELRRWLYENGFEIIDEDL 124 (205)
T ss_dssp S----------HHHHHHHHHHTTEEEEEEEE
T ss_pred CC---------hHHHHHHHHHCCCEEEEeEE
Confidence 32 23788999999999876654
No 263
>PF12511 DUF3716: Protein of unknown function (DUF3716) ; InterPro: IPR022190 This domain family is found in eukaryotes, and is approximately 60 amino acids in length.
Probab=31.70 E-value=20 Score=25.55 Aligned_cols=15 Identities=33% Similarity=0.764 Sum_probs=12.2
Q ss_pred CCCCCCcchh---hhccC
Q 022285 233 PQSACGSVMW---TWRCF 247 (299)
Q Consensus 233 ~~ssCGsC~L---AFRC~ 247 (299)
..++|+||++ +=||+
T Consensus 40 ~~gaCaNC~~~~~~~~CS 57 (60)
T PF12511_consen 40 FNGACANCKWNGQGSRCS 57 (60)
T ss_pred cCCcccCceeCCCCCcCc
Confidence 5799999998 66665
No 264
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=31.51 E-value=79 Score=24.59 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=42.2
Q ss_pred ceEEEEecCCccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCChHHHHHHHHHhccC
Q 022285 8 SAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKP 87 (299)
Q Consensus 8 ~~vLlL~~~~~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKP 87 (299)
-+||++......|. -++..|.+.+++ .+-.+++...+..+++-....||+|+...-+ ...+.++...+.+
T Consensus 4 ~~ILl~C~~G~sSS-~l~~k~~~~~~~----~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi-----~~~~~~i~~~~~~ 73 (95)
T TIGR00853 4 TNILLLCAAGMSTS-LLVNKMNKAAEE----YGVPVKIAAGSYGAAGEKLDDADVVLLAPQV-----AYMLPDLKKETDK 73 (95)
T ss_pred cEEEEECCCchhHH-HHHHHHHHHHHH----CCCcEEEEEecHHHHHhhcCCCCEEEECchH-----HHHHHHHHHHhhh
Confidence 37888877665544 366777776653 2334666666665554334568999887422 2235556555554
Q ss_pred Cc
Q 022285 88 GG 89 (299)
Q Consensus 88 GG 89 (299)
-|
T Consensus 74 ~~ 75 (95)
T TIGR00853 74 KG 75 (95)
T ss_pred cC
Confidence 43
No 265
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=31.48 E-value=76 Score=31.78 Aligned_cols=96 Identities=11% Similarity=0.087 Sum_probs=62.7
Q ss_pred CCccChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCCCCC---CceeEEEecCccCCCChHHHHHHHHHhccCCcEE
Q 022285 16 DKILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVES---FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTI 91 (299)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp~~~---~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l 91 (299)
...|...|++.++.+.|+++++.. ..|+.|..++++.+.... ..||+|+.--.-.... +.++..+. -++|-..+
T Consensus 315 ~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~~-~~~lk~l~-~~~p~~Iv 392 (432)
T COG2265 315 VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAGAD-REVLKQLA-KLKPKRIV 392 (432)
T ss_pred CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCCCCCCC-HHHHHHHH-hcCCCcEE
Confidence 444556788999999999887654 456999999999875443 4789999875433333 35555554 46777888
Q ss_pred EEEecCCCCccchHHHHHHHHHHHHHCCce
Q 022285 92 LIYKKLTSDKGDVDKAISALEGKLLLAGFL 121 (299)
Q Consensus 92 ~i~~~~~~~~g~~~~~~~~l~~~L~laGFv 121 (299)
+|+=. +.+ ...-...|...||.
T Consensus 393 YVSCN-------P~T-laRDl~~L~~~gy~ 414 (432)
T COG2265 393 YVSCN-------PAT-LARDLAILASTGYE 414 (432)
T ss_pred EEeCC-------HHH-HHHHHHHHHhCCeE
Confidence 87632 222 12223467777875
No 266
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=31.11 E-value=21 Score=30.55 Aligned_cols=11 Identities=55% Similarity=0.700 Sum_probs=9.3
Q ss_pred CCCCCCCcchh
Q 022285 232 NPQSACGSVMW 242 (299)
Q Consensus 232 ~~~ssCGsC~L 242 (299)
+.+|+||||.=
T Consensus 21 ~~~S~CgsC~a 31 (150)
T COG3086 21 QRQSACGSCAA 31 (150)
T ss_pred eccCccccchh
Confidence 36899999986
No 267
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=31.08 E-value=57 Score=29.18 Aligned_cols=53 Identities=17% Similarity=0.163 Sum_probs=28.8
Q ss_pred CCCeEEEeccCCCCCCCC---CceeEEEecCccCCCChHHHHHHHHHhccCCcEEE
Q 022285 40 DPQIITQASSLSQLPVES---FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTIL 92 (299)
Q Consensus 40 ~~~i~~~~gd~~~Lp~~~---~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~ 92 (299)
...+.+..+|+.+.++.. +.-|+|++++....-.....|.+++.-||+|-+++
T Consensus 100 ~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 100 PGKVELIHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARII 155 (205)
T ss_dssp --EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEE
T ss_pred cccceeeccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEE
Confidence 456777788876544221 34689999874322124556788889999987775
No 268
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=30.57 E-value=25 Score=24.80 Aligned_cols=10 Identities=20% Similarity=0.384 Sum_probs=7.4
Q ss_pred hhccCCCCCC
Q 022285 243 TWRCFPLRYM 252 (299)
Q Consensus 243 AFRC~~CPYl 252 (299)
.|||..|=++
T Consensus 44 ~y~C~~Cg~~ 53 (54)
T PF10058_consen 44 QYRCPYCGAL 53 (54)
T ss_pred EEEcCCCCCc
Confidence 4888888654
No 269
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=30.23 E-value=59 Score=31.41 Aligned_cols=83 Identities=8% Similarity=0.038 Sum_probs=53.3
Q ss_pred eEEEEecCCc------------cChHHHHHHHHHHHHHHhhhc-CCCeEEEeccCCCCC--------C---C-----CCc
Q 022285 9 AVLALSEDKI------------LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP--------V---E-----SFS 59 (299)
Q Consensus 9 ~vLlL~~~~~------------vt~~dlse~m~~~A~~~~~~~-~~~i~~~~gd~~~Lp--------~---~-----~~s 59 (299)
+||-|..|+- ++..|.+..|++.|++++... ..++.++.+|+..+- + . ...
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYN 279 (353)
T ss_pred cEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccCC
Confidence 5777766553 556688899999999876543 347999999887631 1 0 123
Q ss_pred eeEEEecCccCCCChHHHHHHHHHhccCCcEEEEEe
Q 022285 60 IDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 95 (299)
Q Consensus 60 fD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~ 95 (299)
||+|+.--.-..+. ..+++.+.+ |++.+||.-
T Consensus 280 ~d~v~lDPPR~G~~-~~~l~~l~~---~~~ivYvsC 311 (353)
T TIGR02143 280 CSTIFVDPPRAGLD-PDTCKLVQA---YERILYISC 311 (353)
T ss_pred CCEEEECCCCCCCc-HHHHHHHHc---CCcEEEEEc
Confidence 79988876522222 345555544 788888763
No 270
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=30.08 E-value=1.4e+02 Score=27.72 Aligned_cols=98 Identities=14% Similarity=0.110 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHhh--hc-CCCeEEEeccCCCCCCC--CCceeEEEecCccCCC------------------C----hH
Q 022285 23 AVLNAIRDLGDEAVE--QC-DPQIITQASSLSQLPVE--SFSIDTVLSISSSHEL------------------P----GD 75 (299)
Q Consensus 23 dlse~m~~~A~~~~~--~~-~~~i~~~~gd~~~Lp~~--~~sfD~Vls~~~~~~~------------------~----~~ 75 (299)
|+.+.+...|.-++. .. ..+.....+|.-..+.. ...||+|+++..+... + .-
T Consensus 84 ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (311)
T PF02384_consen 84 EIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEY 163 (311)
T ss_dssp ES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHH
T ss_pred cCcHHHHHHHHhhhhhhccccccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhh
Confidence 444555555543321 11 23344666665544433 4789999998532111 0 12
Q ss_pred HHHHHHHHhccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcee
Q 022285 76 QLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD 122 (299)
Q Consensus 76 ~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~ 122 (299)
.++..+.+.||+||++.+..+...-.. ......+++.|...+++.
T Consensus 164 ~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~--~~~~~~iR~~ll~~~~i~ 208 (311)
T PF02384_consen 164 AFIEHALSLLKPGGRAAIILPNGFLFS--SSSEKKIRKYLLENGYIE 208 (311)
T ss_dssp HHHHHHHHTEEEEEEEEEEEEHHHHHG--STHHHHHHHHHHHHEEEE
T ss_pred hhHHHHHhhcccccceeEEecchhhhc--cchHHHHHHHHHhhchhh
Confidence 578999999999999877665310000 011236777777777764
No 271
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=30.04 E-value=1.5e+02 Score=27.88 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=33.7
Q ss_pred eEEEeccCCCCC------CCCCcee-----EEEecCccCCCC----hHHHHHHHHHhccCCcEEEEEecCCC
Q 022285 43 IITQASSLSQLP------VESFSID-----TVLSISSSHELP----GDQLLEEISRVLKPGGTILIYKKLTS 99 (299)
Q Consensus 43 i~~~~gd~~~Lp------~~~~sfD-----~Vls~~~~~~~~----~~~~L~ei~RvLKPGG~l~i~~~~~~ 99 (299)
..++.+|+.... --.+-+| .|+....+|+++ +..+++.+...|.||..|.|+.....
T Consensus 123 t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 123 TAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp EEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred EEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 778888776431 1112344 355666788886 57899999999999999999987643
No 272
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=29.45 E-value=99 Score=27.78 Aligned_cols=95 Identities=8% Similarity=-0.032 Sum_probs=61.9
Q ss_pred CccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCC-C--ChHHHHHHHHHhccCCcEEEE
Q 022285 17 KILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE-L--PGDQLLEEISRVLKPGGTILI 93 (299)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~-~--~~~~~L~ei~RvLKPGG~l~i 93 (299)
..|...|+=.++++.++++++....++.|..+|+... ...||.|+.+-.+-- . ....++...+++- .++.
T Consensus 69 ~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s----~vVY 141 (198)
T COG2263 69 SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMNPPFGSQRRHADRPFLLKALEIS----DVVY 141 (198)
T ss_pred cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc---CCccceEEECCCCccccccCCHHHHHHHHHhh----heEE
Confidence 4444556667888888887777778899999999877 567888888865321 1 2356777776664 3333
Q ss_pred EecCCCCccchHHHHHHHHHHHHHCCceecee
Q 022285 94 YKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (299)
Q Consensus 94 ~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~ 125 (299)
.-+..+ ..+-+++....+||.....
T Consensus 142 siH~a~-------~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 142 SIHKAG-------SRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred Eeeccc-------cHHHHHHHHHhcCCeEEEE
Confidence 333321 1224567788899876654
No 273
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=29.19 E-value=13 Score=27.18 Aligned_cols=8 Identities=88% Similarity=1.601 Sum_probs=6.2
Q ss_pred CccCCCCC
Q 022285 202 TRKACKNC 209 (299)
Q Consensus 202 krkACknC 209 (299)
..||||||
T Consensus 3 ~~kAC~~C 10 (64)
T COG2093 3 TEKACKNC 10 (64)
T ss_pred hhHHHhhc
Confidence 46888888
No 274
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=28.25 E-value=49 Score=28.14 Aligned_cols=41 Identities=29% Similarity=0.209 Sum_probs=24.9
Q ss_pred CceeEEEecCccC-----CCC-------hHHHHHHHHHhccCCcEEEEEecCC
Q 022285 58 FSIDTVLSISSSH-----ELP-------GDQLLEEISRVLKPGGTILIYKKLT 98 (299)
Q Consensus 58 ~sfD~Vls~~~~~-----~~~-------~~~~L~ei~RvLKPGG~l~i~~~~~ 98 (299)
..||+|++-.+.. ... ....+.-+.+.|+|||.+++.....
T Consensus 90 ~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp CSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred cCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 6899999865211 011 1234445567899999999887764
No 275
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=27.58 E-value=61 Score=30.97 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhccCCcEEEEEecC
Q 022285 74 GDQLLEEISRVLKPGGTILIYKKL 97 (299)
Q Consensus 74 ~~~~L~ei~RvLKPGG~l~i~~~~ 97 (299)
...+|..+..+|+|||+|.|....
T Consensus 219 L~~~L~~~~~~L~~gGrl~VISfH 242 (305)
T TIGR00006 219 LEEALQFAPNLLAPGGRLSIISFH 242 (305)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecC
Confidence 467889999999999999887763
No 276
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=26.57 E-value=67 Score=30.84 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhccCCcEEEEEecC
Q 022285 74 GDQLLEEISRVLKPGGTILIYKKL 97 (299)
Q Consensus 74 ~~~~L~ei~RvLKPGG~l~i~~~~ 97 (299)
.+.+|..+.++|+|||+|.|....
T Consensus 223 L~~~L~~a~~~L~~gGRl~VIsFH 246 (314)
T COG0275 223 LEEALEAALDLLKPGGRLAVISFH 246 (314)
T ss_pred HHHHHHHHHHhhCCCcEEEEEEec
Confidence 478999999999999999887663
No 277
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=24.68 E-value=1.8e+02 Score=29.71 Aligned_cols=86 Identities=16% Similarity=0.178 Sum_probs=52.1
Q ss_pred EEEecCC--ccChHHHHHHHHHHHHHHhhh---cC----CCeEEEeccCCCCCCCCC-ceeEEEecCccCCCC-----hH
Q 022285 11 LALSEDK--ILPVSAVLNAIRDLGDEAVEQ---CD----PQIITQASSLSQLPVESF-SIDTVLSISSSHELP-----GD 75 (299)
Q Consensus 11 LlL~~~~--~vt~~dlse~m~~~A~~~~~~---~~----~~i~~~~gd~~~Lp~~~~-sfD~Vls~~~~~~~~-----~~ 75 (299)
-+||..+ .++..|.+..|...+...... .. .++.+.. .-+|.... .||+|++.+.++++. ..
T Consensus 219 ~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r---~~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~ 295 (491)
T KOG2539|consen 219 VLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHR---QRLPIDIKNGYDLVICAHKLHELGSKFSRLD 295 (491)
T ss_pred hhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhc---ccCCCCcccceeeEEeeeeeeccCCchhhhh
Confidence 3456642 345677777787776653322 11 1111111 13465544 499999999888765 13
Q ss_pred HHHHHHHHhccCCcEEEEEecCCC
Q 022285 76 QLLEEISRVLKPGGTILIYKKLTS 99 (299)
Q Consensus 76 ~~L~ei~RvLKPGG~l~i~~~~~~ 99 (299)
..-....+..++||.+++.+.+..
T Consensus 296 v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 296 VPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred hhHHHHHhccCCCceEEEEecCCc
Confidence 344456678899999998887653
No 278
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=24.25 E-value=78 Score=27.05 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=24.7
Q ss_pred CCceeEEEecCccCCCChHHHHHHHHHhccCCcEEEEEe
Q 022285 57 SFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 95 (299)
Q Consensus 57 ~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~ 95 (299)
...||.|+..+.-..-...-.|..+...|++||.++|.-
T Consensus 67 ~~~~D~vvly~PKaK~e~~~lL~~l~~~L~~g~~i~vVG 105 (155)
T PF08468_consen 67 DQDFDTVVLYWPKAKAEAQYLLANLLSHLPPGTEIFVVG 105 (155)
T ss_dssp HTT-SEEEEE--SSHHHHHHHHHHHHTTS-TT-EEEEEE
T ss_pred ccCCCEEEEEccCcHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 356999998764222223567889999999999998773
No 279
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=23.66 E-value=80 Score=29.99 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhccCCcEEEEEecC
Q 022285 74 GDQLLEEISRVLKPGGTILIYKKL 97 (299)
Q Consensus 74 ~~~~L~ei~RvLKPGG~l~i~~~~ 97 (299)
...+|..+..+|+|||++.|....
T Consensus 215 L~~~L~~~~~~L~~gGrl~visfH 238 (296)
T PRK00050 215 LERALEAALDLLKPGGRLAVISFH 238 (296)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecC
Confidence 467889999999999999887763
No 280
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=23.35 E-value=34 Score=26.98 Aligned_cols=13 Identities=23% Similarity=0.335 Sum_probs=11.2
Q ss_pred cchhhhccCCCCCC
Q 022285 239 SVMWTWRCFPLRYM 252 (299)
Q Consensus 239 sC~LAFRC~~CPYl 252 (299)
||.|+|. ..|||+
T Consensus 64 sCml~~~-PkCpy~ 76 (101)
T COG5561 64 SCMLAFK-PKCPYA 76 (101)
T ss_pred eeeeccC-CCCCcc
Confidence 5888888 899997
No 281
>COG4332 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.29 E-value=31 Score=30.56 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=13.1
Q ss_pred CCCCCCcchh--hhccCC
Q 022285 233 PQSACGSVMW--TWRCFP 248 (299)
Q Consensus 233 ~~ssCGsC~L--AFRC~~ 248 (299)
+--.|.+|.- ||+|+|
T Consensus 16 ~~k~C~~Cg~kr~f~cSg 33 (203)
T COG4332 16 PAKRCNSCGVKRAFTCSG 33 (203)
T ss_pred hhhhCcccCCcceeeecC
Confidence 4567999998 999886
No 282
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=22.27 E-value=4.4e+02 Score=26.65 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=15.4
Q ss_pred HHHHHhccCCcEEEEEecC
Q 022285 79 EEISRVLKPGGTILIYKKL 97 (299)
Q Consensus 79 ~ei~RvLKPGG~l~i~~~~ 97 (299)
....+.|++||++.+..+.
T Consensus 180 ~~~~~lL~~~G~~~~I~P~ 198 (524)
T TIGR02987 180 EISLEIANKNGYVSIISPA 198 (524)
T ss_pred HHHHHhcCCCCEEEEEECh
Confidence 4578899999999877664
No 283
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=21.96 E-value=5.4e+02 Score=22.46 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=24.3
Q ss_pred CceeEEEecCccCCCChHHHHHHHHHhccCCcEEEEEe
Q 022285 58 FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 95 (299)
Q Consensus 58 ~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~ 95 (299)
..||+|+..............+.+.+.++.||-|+..-
T Consensus 51 ~~~Dvvv~~~~~~~~l~~~~~~al~~~v~~Ggglv~lH 88 (217)
T PF06283_consen 51 KGYDVVVFYNTGGDELTDEQRAALRDYVENGGGLVGLH 88 (217)
T ss_dssp CT-SEEEEE-SSCCGS-HHHHHHHHHHHHTT-EEEEEG
T ss_pred cCCCEEEEECCCCCcCCHHHHHHHHHHHHcCCCEEEEc
Confidence 58999998876532123456778888888888887665
No 284
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=20.78 E-value=70 Score=30.68 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=20.7
Q ss_pred hHHHHHHHHHhccCCcEEEEEecC
Q 022285 74 GDQLLEEISRVLKPGGTILIYKKL 97 (299)
Q Consensus 74 ~~~~L~ei~RvLKPGG~l~i~~~~ 97 (299)
.+.+|..+..+|+|||+++|....
T Consensus 220 L~~~L~~a~~~L~~gGrl~VISFH 243 (310)
T PF01795_consen 220 LERGLEAAPDLLKPGGRLVVISFH 243 (310)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEESS
T ss_pred HHHHHHHHHHHhcCCcEEEEEEec
Confidence 467899999999999999888763
No 285
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and S-locus glycoproteins are involved in sporophytic self-incompatibility response in Brassica, one of probably many molecular mechanisms, by which hermaphrodite flowering plants avoid self-fertilization.
Probab=20.50 E-value=29 Score=25.30 Aligned_cols=9 Identities=67% Similarity=1.660 Sum_probs=8.0
Q ss_pred ccCC-CCCcc
Q 022285 203 RKAC-KNCIC 211 (299)
Q Consensus 203 rkAC-knCtC 211 (299)
|++| +||+|
T Consensus 38 ~~~Cl~nCsC 47 (84)
T cd01098 38 REACLSNCSC 47 (84)
T ss_pred HHHHhcCCCc
Confidence 6888 99999
No 286
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=20.26 E-value=1.6e+02 Score=22.80 Aligned_cols=76 Identities=13% Similarity=0.140 Sum_probs=41.8
Q ss_pred eEEEEecCCccChHHHHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCCCCceeEEEecCccCCCChHHHHHHHHHhccCC
Q 022285 9 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPG 88 (299)
Q Consensus 9 ~vLlL~~~~~vt~~dlse~m~~~A~~~~~~~~~~i~~~~gd~~~Lp~~~~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPG 88 (299)
+||++......|. -+++.|.+.+++ .+..+.+...+..++.-....||+|+...-+ ...+.++.+.+.+.
T Consensus 1 kIl~~Cg~G~sTS-~~~~ki~~~~~~----~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv-----~~~~~~i~~~~~~~ 70 (96)
T cd05564 1 KILLVCSAGMSTS-ILVKKMKKAAEK----RGIDAEIEAVPESELEEYIDDADVVLLGPQV-----RYMLDEVKKKAAEY 70 (96)
T ss_pred CEEEEcCCCchHH-HHHHHHHHHHHH----CCCceEEEEecHHHHHHhcCCCCEEEEChhH-----HHHHHHHHHHhccC
Confidence 3677766655554 356666665543 2334666666665554334568998886421 23455666544443
Q ss_pred cE-EEEE
Q 022285 89 GT-ILIY 94 (299)
Q Consensus 89 G~-l~i~ 94 (299)
+. +.+.
T Consensus 71 ~~pv~~I 77 (96)
T cd05564 71 GIPVAVI 77 (96)
T ss_pred CCcEEEc
Confidence 33 4433
No 287
>KOG4477 consensus RING1 interactor RYBP and related Zn-finger-containing proteins [Transcription]
Probab=20.12 E-value=33 Score=30.54 Aligned_cols=27 Identities=11% Similarity=0.312 Sum_probs=20.6
Q ss_pred CCCCCCcchh-----hhccCCCCCC-CCCCCCC
Q 022285 233 PQSACGSVMW-----TWRCFPLRYM-PLQGSAS 259 (299)
Q Consensus 233 ~~ssCGsC~L-----AFRC~~CPYl-GlPaFkp 259 (299)
-.-.|-.|.. ||||.-|-.+ |---=+|
T Consensus 23 g~WdCsvCTFrNsAeAfkC~vCdvRKGTSTRkp 55 (228)
T KOG4477|consen 23 GKWDCSVCTFRNSAEAFKCFVCDVRKGTSTRKP 55 (228)
T ss_pred CceeeeeeeecchhhhhheeeecccccccccCC
Confidence 3567888988 9999999876 6555554
Done!