BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022286
         (299 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3C6F|A Chain A, Crystal Structure Of Protein Bsu07140 From Bacillus
           Subtilis
 pdb|3C6F|B Chain B, Crystal Structure Of Protein Bsu07140 From Bacillus
           Subtilis
 pdb|3C6F|C Chain C, Crystal Structure Of Protein Bsu07140 From Bacillus
           Subtilis
 pdb|3C6F|D Chain D, Crystal Structure Of Protein Bsu07140 From Bacillus
           Subtilis
          Length = 153

 Score = 28.1 bits (61), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 98  FLEKEEEYVIKWKELQDRVA-KSKDSNEELMKVGREIVDFHGEMVLLENYSALNYTGLVK 156
           FLE E   VI+  ELQ +V  K+K    +L  + R+   F  + V    Y+ +   G+V 
Sbjct: 11  FLEGEPNIVIRKGELQYKVMKKNKIDINQLQSMLRQAGSFSIQEV---EYAIMETNGMVS 67

Query: 157 ILKK--YDKRTGALIRLP 172
           +L K  +DK T   +++P
Sbjct: 68  VLPKSDFDKPTNKDMQIP 85


>pdb|2P0W|A Chain A, Human Histone Acetyltransferase 1 (Hat1)
 pdb|2P0W|B Chain B, Human Histone Acetyltransferase 1 (Hat1)
          Length = 324

 Score = 28.1 bits (61), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 27/94 (28%)

Query: 26  KDLKKQLKLIYPEKQQQQLNCD-----------------GGINKRLRIEGPEETD-GGDC 67
           +DL+  ++  +PE   Q    D                 G ++   R+E   + D   DC
Sbjct: 25  EDLENDIRTFFPEYTHQLFGDDETAFGYKGLKILLYYIAGSLSTMFRVEYASKVDENFDC 84

Query: 68  ASSKEDNEEAKQV---------NDFVKLLEDEID 92
             + +   + +Q+         NDF+ LLE E+D
Sbjct: 85  VEADDVEGKIRQIIPPGFCTNTNDFLSLLEKEVD 118


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.133    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,878,654
Number of Sequences: 62578
Number of extensions: 368194
Number of successful extensions: 758
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 749
Number of HSP's gapped (non-prelim): 18
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)