Query 022286
Match_columns 299
No_of_seqs 200 out of 987
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 02:22:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022286.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022286hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1161 Protein involved in va 100.0 6E-48 1.3E-52 358.2 20.5 253 1-290 1-258 (310)
2 PF03105 SPX: SPX domain; Int 100.0 1E-32 2.3E-37 251.0 17.9 173 1-177 1-274 (275)
3 KOG1162 Predicted small molecu 100.0 2E-32 4.3E-37 275.0 17.6 186 1-213 1-212 (617)
4 COG5036 SPX domain-containing 99.9 3.4E-25 7.4E-30 211.3 13.8 168 1-210 1-171 (509)
5 COG5408 SPX domain-containing 99.7 2.1E-16 4.5E-21 147.2 14.0 50 128-177 242-291 (296)
6 PF03915 AIP3: Actin interacti 63.3 1E+02 0.0022 31.1 11.4 111 81-203 201-316 (424)
7 PF07889 DUF1664: Protein of u 62.5 92 0.002 26.0 9.5 69 77-145 38-110 (126)
8 PF10112 Halogen_Hydrol: 5-bro 61.8 1.1E+02 0.0024 26.8 11.9 73 129-204 113-185 (199)
9 KOG0977 Nuclear envelope prote 33.7 4.8E+02 0.01 27.2 11.0 37 125-165 350-386 (546)
10 smart00806 AIP3 Actin interact 31.5 5.6E+02 0.012 25.9 11.8 87 104-202 221-319 (426)
11 KOG4460 Nuclear pore complex, 30.7 6.6E+02 0.014 26.5 16.0 70 87-163 607-687 (741)
12 PF10267 Tmemb_cc2: Predicted 29.0 4.3E+02 0.0094 26.3 9.5 39 81-119 225-270 (395)
13 PF10498 IFT57: Intra-flagella 27.5 6E+02 0.013 24.9 10.6 20 16-35 216-235 (359)
14 COG5127 Vacuolar H+-ATPase V1 27.4 37 0.0008 32.7 1.7 20 266-285 30-49 (383)
15 PF01544 CorA: CorA-like Mg2+ 27.2 3.8E+02 0.0082 24.1 8.4 64 91-159 116-179 (292)
16 PF10146 zf-C4H2: Zinc finger- 26.4 5.1E+02 0.011 23.8 10.8 67 79-148 29-98 (230)
17 PF07067 DUF1340: Protein of u 25.8 2.6E+02 0.0056 25.2 6.6 107 81-210 113-219 (236)
18 KOG4466 Component of histone d 23.7 3.8E+02 0.0082 25.6 7.6 78 80-160 15-104 (291)
19 KOG1281 Na+/dicarboxylate, Na+ 22.9 33 0.00072 35.7 0.5 47 136-182 7-55 (586)
20 PF15389 DUF4612: Domain of un 22.4 73 0.0016 26.3 2.3 19 76-94 87-105 (115)
21 PF06757 Ins_allergen_rp: Inse 22.3 4.3E+02 0.0092 22.8 7.4 110 76-199 4-114 (179)
22 PF10805 DUF2730: Protein of u 21.9 4E+02 0.0086 21.2 6.6 42 102-144 44-85 (106)
23 PF09712 PHA_synth_III_E: Poly 21.9 6.8E+02 0.015 23.7 9.1 70 75-144 220-292 (293)
24 smart00526 H15 Domain in histo 20.0 55 0.0012 23.5 1.1 20 254-274 11-30 (66)
No 1
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6e-48 Score=358.24 Aligned_cols=253 Identities=38% Similarity=0.535 Sum_probs=204.3
Q ss_pred CcchHHHhHhhhccCchhhhccCChHhHHHHHHhhchhhhhhhhccCCCCccccccCCCCCCCCCCCCCCcchhHHHhhH
Q 022286 1 MKFWKSLSILIEETLPEWRDKFLSYKDLKKQLKLIYPEKQQQQLNCDGGINKRLRIEGPEETDGGDCASSKEDNEEAKQV 80 (299)
Q Consensus 1 MKFGK~L~~~ie~~vPEW~~~YIdYK~LKK~IK~~~~~~~~~~~~~~~~~~k~~~~~~~~et~~~~~~~~~~~~~~~~~e 80 (299)
|||||.|+.. .+|||+++|||||.|||+||+....... +. . + ...+
T Consensus 1 MkFGk~L~~~---~l~ew~~~yinYk~LKK~lK~~~~~~~~------~~---------------~--~--------~~~e 46 (310)
T KOG1161|consen 1 MKFGKYLKEE---LLPEWKDKYINYKELKKLLKQYSIQTAD------SS---------------P--D--------SRDE 46 (310)
T ss_pred CchhHHHHHh---hhhhHhhhhcCHHHHHHHHHHhcccccc------CC---------------c--c--------cchH
Confidence 9999999965 6999999999999999999998654210 00 0 0 1168
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---ccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 022286 81 NDFVKLLEDEIDKFNAFFLEKEEEYVIKWKELQDRVAKS---KDSNEELMKVGREIVDFHGEMVLLENYSALNYTGLVKI 157 (299)
Q Consensus 81 ~~F~~~L~~El~KVn~Fy~eke~el~~rl~~L~~~i~~~---~~s~e~~~~l~~~l~el~~el~~L~~f~~LN~tgf~KI 157 (299)
.+|+++|+.||+||+.||.++++++.+|+++|++++... ..+.+++..|++++.+|++||++|.+|++||+|||+||
T Consensus 47 ~dFv~~Ld~ELEKv~~F~lek~~el~~Rl~~L~e~~~~~~~~~~~~~~~~~lr~~l~~~~~em~~L~~fs~LN~tGf~KI 126 (310)
T KOG1161|consen 47 SDFVRLLDAELEKVNGFQLEKESELIIRLKELEEKIDALSLEPPSAEEMKELREELVDFHGEMVLLENFSRLNYTGFAKI 126 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 899999999999999999999999999999999999752 24567889999999999999999999999999999999
Q ss_pred HHhHhhhcCCcccHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCCccCCccCCCCCC-CCCccCCCCCCCC
Q 022286 158 LKKYDKRTGALIRLPFIKKVLQQPFYTTDVLNKLVKECEVRLDQLFSMDEPSASSEGTELQGGPDF-KASTESKGRPLPG 236 (299)
Q Consensus 158 LKK~DK~tg~~l~~~f~~~V~~qpF~~~~~L~~Lv~~~E~l~~~lf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 236 (299)
||||||+||..++.+|.++|..+|||+++.+..|+.+|+.+|+.+++.++... +. .+++..... ++....... -.+
T Consensus 127 LKK~DKrtg~~l~~~f~~~l~~~Pf~~~e~~~~Lv~e~~~l~~~l~~~~~~~~-s~-~~~~~~~~~~t~k~wvH~~-n~~ 203 (310)
T KOG1161|consen 127 LKKHDKRTGYRLRPYFQVRLLHQPFFTTEQLFRLVYEISILLDLLRPSNRNGE-SK-ESNDSDFVRRTTKYWVHED-NVN 203 (310)
T ss_pred HHHHhcccccccccHHHHHHHhCCCchhhhHHHHHHHHHHHHHHhcccccccc-cc-cccchhhhhhccccccCcc-ccc
Confidence 99999999999999999999999999999999999999999999999887622 11 111111100 000000111 112
Q ss_pred CchhHHHHhhhhhHHHh-HHHHHHHHHHHhcCCCccccCCCCCCCCCCccccccc
Q 022286 237 SKELAEIEHMENMYVKL-TLSALRVLKEIRSGSSTVSMFSLPPLQSTAVEYDWKK 290 (299)
Q Consensus 237 ~~~~~~~~~~~~~~~~~-t~~al~~~~~~~~~sst~~~~s~~~~~~~~~~~~~~~ 290 (299)
+...-.+.++..+++.+ |++||.++.+.++||+||+.||+||+..++..+.|-.
T Consensus 204 e~k~~~~~~lpvL~~~~~~d~ait~~~~~n~~~~~y~~~l~~~~~a~~~rl~w~~ 258 (310)
T KOG1161|consen 204 EVKTYILRHLPVLVFNSPTDAAITTLYFDNSGSDLYSQFLLKSLLAEALRLRWYG 258 (310)
T ss_pred hhHHHHhccCcceecCCcchHHHHHHHHhccchHHHHHHhcccccchhhhhhhhc
Confidence 34455667777777666 9999999999999999999999999999998655543
No 2
>PF03105 SPX: SPX domain; InterPro: IPR004331 The SPX domain is named after SYG1/Pho81/XPR1 proteins. This 180 residue length domain is found at the amino terminus of a variety of proteins. In the yeast protein SYG1, the N terminus directly binds to the G- protein beta subunit and inhibits transduction of the mating pheromone signal [] suggesting that all the members of this family are involved in G-protein associated signal transduction. The C-terminal of these proteins often have an EXS domain (IPR004342 from INTERPRO) []. The N-termini of several proteins involved in the regulation of phosphate transport, including the putative phosphate level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 from Neurospora crassa, are also members of this family [, ]. NUC-2 contains several ankyrin repeats (IPR002110 from INTERPRO). Several members of this family are the XPR1 proteins: the xenotropic and polytropic retrovirus receptor confers susceptibility to infection with Murine leukemia virus (MLV) []. The similarity between SYG1, phosphate regulators and XPR1 sequences has been previously noted, as has the additional similarity to several predicted proteins, of unknown function, from Drosophila melanogaster, Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces pombe, and Saccharomyces cerevisiae [, ]. In addition, given the similarities between XPR1 and SYG1 and phosphate regulatory proteins, it has been proposed that XPR1 might be involved in G-protein associated signal transduction [, , ] and may itself function as a phosphate sensor [].
Probab=100.00 E-value=1e-32 Score=251.04 Aligned_cols=173 Identities=32% Similarity=0.543 Sum_probs=127.0
Q ss_pred CcchHHHhHhhhccCchhhhccCChHhHHHHHHhhchhhhhhhhccCC----------CCcccccc------CCCC-CCC
Q 022286 1 MKFWKSLSILIEETLPEWRDKFLSYKDLKKQLKLIYPEKQQQQLNCDG----------GINKRLRI------EGPE-ETD 63 (299)
Q Consensus 1 MKFGK~L~~~ie~~vPEW~~~YIdYK~LKK~IK~~~~~~~~~~~~~~~----------~~~k~~~~------~~~~-et~ 63 (299)
||||+.|+.++ +|||+++||||+.|||+||.+............. .+...... ..+. .+.
T Consensus 1 MKFgk~L~~~~---vpEW~~~YidYk~LKk~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (275)
T PF03105_consen 1 MKFGKQLQENA---VPEWRDKYIDYKQLKKLIKRIQNEKESLGLSAETLSSISISSSSSSSSRSSSNSFESTSPSSSNTS 77 (275)
T ss_pred CCchHHHHHhc---CHHHHHHhCCHHHHHHHHHHHHhhhhcccccccccchhhhhhhhhccccccccccccccccccccc
Confidence 99999999984 9999999999999999999997765432100000 00000000 0000 000
Q ss_pred CCCCCCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----------C-----------
Q 022286 64 GGDCASSKEDNEEAKQVNDFVKLLEDEIDKFNAFFLEKEEEYVIKWKELQDRVAKSKD----------S----------- 122 (299)
Q Consensus 64 ~~~~~~~~~~~~~~~~e~~F~~~L~~El~KVn~Fy~eke~el~~rl~~L~~~i~~~~~----------s----------- 122 (299)
+.. ............+..||..|+.||+||+.||.+++.++..++..|+.++..+.. .
T Consensus 78 ~~~-~~~~~~~~~~~~~~~F~~~L~~El~KVn~Fy~~k~~el~~~~~~L~~ql~~l~~~~~~~~~~~~~~~~~~~~~~~~ 156 (275)
T PF03105_consen 78 PSS-SNSEQNEDNEESEEEFFELLDEELEKVNDFYKEKEKELRERLEELQKQLEELREQRSKSSDKYNWNQSSQLSSSSN 156 (275)
T ss_pred ccc-cccchhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchhhccccc
Confidence 000 000112234567899999999999999999999999999999999998765530 0
Q ss_pred ---------------------------------------------------------------HHHHHHHHHHHHHHHHH
Q 022286 123 ---------------------------------------------------------------NEELMKVGREIVDFHGE 139 (299)
Q Consensus 123 ---------------------------------------------------------------~e~~~~l~~~l~el~~e 139 (299)
......|+.+|.++|.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~y~~ 236 (275)
T PF03105_consen 157 IFSSSSSASAGSSNSSSASRRSQRFSSESSKQSSNSESDAESDNNRGDRSSDKPFLSSSQKSLKKARKQLKKAFIELYRE 236 (275)
T ss_pred cccCccccccCCccccccccccccchhhhhhccCCCCcccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 01235688999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHhHhhhcCCcccHHHHHHh
Q 022286 140 MVLLENYSALNYTGLVKILKKYDKRTGALIRLPFIKKV 177 (299)
Q Consensus 140 l~~L~~f~~LN~tgf~KILKK~DK~tg~~l~~~f~~~V 177 (299)
|.+|++|+.||+|||+||||||||++|..++..||+.|
T Consensus 237 l~~Lk~f~~LN~taf~KIlKK~DK~~~~~~~~~y~~~v 274 (275)
T PF03105_consen 237 LELLKSFVELNRTAFRKILKKYDKVTGTSLSDDYMEEV 274 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhhcc
Confidence 99999999999999999999999999999999999876
No 3
>KOG1162 consensus Predicted small molecule transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-32 Score=275.04 Aligned_cols=186 Identities=30% Similarity=0.409 Sum_probs=159.6
Q ss_pred CcchHHHhHhhhccCchhhhccCChHhHHHHHHhhchhhhhhhhccCCCCccccccCCCCCCCCCCCCCCc-chhHHHhh
Q 022286 1 MKFWKSLSILIEETLPEWRDKFLSYKDLKKQLKLIYPEKQQQQLNCDGGINKRLRIEGPEETDGGDCASSK-EDNEEAKQ 79 (299)
Q Consensus 1 MKFGK~L~~~ie~~vPEW~~~YIdYK~LKK~IK~~~~~~~~~~~~~~~~~~k~~~~~~~~et~~~~~~~~~-~~~~~~~~ 79 (299)
|||||.|..|+ +|||++.|+||+.||++||.+....++. . + ..+. ..+...+.
T Consensus 1 MKFgk~~~~q~---~pEW~~ay~dY~~lK~~l~~i~~~~~~~-----~-~-----------------t~~~~~~~~~~~~ 54 (617)
T KOG1162|consen 1 MKFGKELESQL---VPEWRQAYIDYKYLKKLLKEIIENKPSS-----E-E-----------------TTFLMVSEEGGEF 54 (617)
T ss_pred CcchHHHHHhc---CHHHHHHhhhHHHHHHHHHHHHhcCCCc-----C-c-----------------cHHHHHHHhhhhh
Confidence 99999999997 9999999999999999999987653311 0 0 0000 12234577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--------------------C-----HHHHHHHHHHHH
Q 022286 80 VNDFVKLLEDEIDKFNAFFLEKEEEYVIKWKELQDRVAKSKD--------------------S-----NEELMKVGREIV 134 (299)
Q Consensus 80 e~~F~~~L~~El~KVn~Fy~eke~el~~rl~~L~~~i~~~~~--------------------s-----~e~~~~l~~~l~ 134 (299)
+..||+.||.|++|||.||.+++.|+.++...|++|+....+ . ...-++++.++.
T Consensus 55 ~~~Ff~~ld~el~Kvn~Fy~~k~~e~~~~~~~L~~ql~~~~~~r~~~~~~~~~~~~~~~~~~~f~~~~~~~e~~lk~af~ 134 (617)
T KOG1162|consen 55 EEVFFRRLDEELNKVNKFYKEKVKEAREEAEELNKQLDALIALRVKSRSSVDISDRAARLRGKFTKVLRKAEEKLKLAFS 134 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999865531 0 112356889999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhHhhhcCCcccHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Q 022286 135 DFHGEMVLLENYSALNYTGLVKILKKYDKRTGALIRLPFIKKVLQQPFYTTDVLNKLVKECEVRLDQLFSMDEPSASSE 213 (299)
Q Consensus 135 el~~el~~L~~f~~LN~tgf~KILKK~DK~tg~~l~~~f~~~V~~qpF~~~~~L~~Lv~~~E~l~~~lf~~~~~~~~~~ 213 (299)
|+|.-|.+|++|+.||.+||+||+|||||.++... ..|++.|...+|.+++.+++|+.++|++|++.|++||+.++..
T Consensus 135 Efy~~L~llk~y~~lN~~~f~KI~KKyDK~~~~~~-~~~~~~v~~s~f~~~~~i~~l~~~Ve~~f~~~fan~nr~~~m~ 212 (617)
T KOG1162|consen 135 EFYLKLRLLKNYQFLNVTAFRKILKKYDKITSRDA-KRYVKMVDKSYFTSSDEITRLMLEVEETFTKHFANGNRRKAMK 212 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccch-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhCCChhHhhh
Confidence 99999999999999999999999999999999999 8889999999999999999999999999999999999987654
No 4
>COG5036 SPX domain-containing protein involved in vacuolar polyphosphate accumulation [Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.4e-25 Score=211.34 Aligned_cols=168 Identities=28% Similarity=0.431 Sum_probs=140.4
Q ss_pred CcchHHHhHhhhccCchhhhccCChHhHHHHHHhhchhhhhhhhccCCCCccccccCCCCCCCCCCCCCCcchhHHHhhH
Q 022286 1 MKFWKSLSILIEETLPEWRDKFLSYKDLKKQLKLIYPEKQQQQLNCDGGINKRLRIEGPEETDGGDCASSKEDNEEAKQV 80 (299)
Q Consensus 1 MKFGK~L~~~ie~~vPEW~~~YIdYK~LKK~IK~~~~~~~~~~~~~~~~~~k~~~~~~~~et~~~~~~~~~~~~~~~~~e 80 (299)
|+||+.|.+.+ +|+|+.+||||..||++||.-... ++ |.+.++
T Consensus 1 M~Fg~~L~~~l---y~p~k~~YinYe~LK~~lK~~~~~-------------------------~~---------w~e~dE 43 (509)
T COG5036 1 MRFGKKLKNNL---YPPYKYSYINYENLKKLLKESEEE-------------------------GS---------WSESDE 43 (509)
T ss_pred CchhHHHHhcc---CcccccccCCHHHHHHHHhhcccc-------------------------CC---------Ccccch
Confidence 99999999987 999999999999999999981110 01 345678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 022286 81 NDFVKLLEDEIDKFNAFFLEKEEEYVIKWKELQDRVAKSK---DSNEELMKVGREIVDFHGEMVLLENYSALNYTGLVKI 157 (299)
Q Consensus 81 ~~F~~~L~~El~KVn~Fy~eke~el~~rl~~L~~~i~~~~---~s~e~~~~l~~~l~el~~el~~L~~f~~LN~tgf~KI 157 (299)
.+|+..|+.||+||..|...++.++.+|+..|+++..... ++. ...+.+.+...++..|.+|.+||+|||.||
T Consensus 44 sdFVe~Ld~eLeKVY~F~~~k~~ev~erl~~leeq~~~~i~~~ds~----~~~~~LeE~L~~v~~l~kF~RLN~tGF~KI 119 (509)
T COG5036 44 SDFVEELDKELEKVYGFQLSKYSEVMERLRTLEEQTDEAIQELDSD----NFPKILEEELDTVHDLAKFSRLNFTGFKKI 119 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhhcccCC----cchhHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 9999999999999999999999999999999999876321 111 112244555558889999999999999999
Q ss_pred HHhHhhhcCCcccHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHhcCCCCCC
Q 022286 158 LKKYDKRTGALIRLPFIKKVLQQPFYTTDVLNKLVKECEVRLDQLFSMDEPSA 210 (299)
Q Consensus 158 LKK~DK~tg~~l~~~f~~~V~~qpF~~~~~L~~Lv~~~E~l~~~lf~~~~~~~ 210 (299)
+|||||.+|..++..|-.++...||+ .+..+.|+.++..+|.-+-..+++-+
T Consensus 120 vKKHDK~~~y~lkpvfqvrLk~~p~~-se~yd~Ll~kis~LY~~lR~~~~~ik 171 (509)
T COG5036 120 VKKHDKHTGYSLKPVFQVRLKAKPFF-SEQYDPLLYKISSLYNILRSSLSPIK 171 (509)
T ss_pred HHhhcCCCCceechhHHHHhccCCcc-hhhhcHHHHHHHHHHHHHHhcCCccc
Confidence 99999999998888888889999996 68889999999999998888777443
No 5
>COG5408 SPX domain-containing protein [Signal transduction mechanisms]
Probab=99.70 E-value=2.1e-16 Score=147.24 Aligned_cols=50 Identities=30% Similarity=0.529 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhhhcCCcccHHHHHHh
Q 022286 128 KVGREIVDFHGEMVLLENYSALNYTGLVKILKKYDKRTGALIRLPFIKKV 177 (299)
Q Consensus 128 ~l~~~l~el~~el~~L~~f~~LN~tgf~KILKK~DK~tg~~l~~~f~~~V 177 (299)
.+++.+.++|..+..|..|++||+|||+||+|||||..+..++..|+...
T Consensus 242 ~lkk~ii~~y~~l~~lksf~eLN~tGf~Ki~KK~DK~l~~~~~~~~~s~~ 291 (296)
T COG5408 242 LLKKRIIELYIQLHQLKSFIELNYTGFSKITKKYDKTLHQNLRHEYMSRS 291 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 46789999999999999999999999999999999999999999998754
No 6
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=63.25 E-value=1e+02 Score=31.06 Aligned_cols=111 Identities=16% Similarity=0.236 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 022286 81 NDFVKLLEDEIDKFNAFFLEKEEEYVIKWKELQDRVAK--SKDSNEELMKVGREIVDFHGEMVLLENYSALNYTGLVKIL 158 (299)
Q Consensus 81 ~~F~~~L~~El~KVn~Fy~eke~el~~rl~~L~~~i~~--~~~s~e~~~~l~~~l~el~~el~~L~~f~~LN~tgf~KIL 158 (299)
..++..-..+|.....=...+..++..-++.|...+.. +.++...+..+.+.+..+-.+|..++.|..-=.-...||-
T Consensus 201 R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiW 280 (424)
T PF03915_consen 201 RAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIW 280 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 34444444444444433344444444444444443321 2245677888999999999999999999766555555553
Q ss_pred HhHhhhcCCcccHHHHHH-hhcCCCCC--hHHHHHHHHHHHHHHHHHh
Q 022286 159 KKYDKRTGALIRLPFIKK-VLQQPFYT--TDVLNKLVKECEVRLDQLF 203 (299)
Q Consensus 159 KK~DK~tg~~l~~~f~~~-V~~qpF~~--~~~L~~Lv~~~E~l~~~lf 203 (299)
-+ . ++. +..|.|++ .+.+.+|..+|+.+-..+.
T Consensus 281 E~-----------E-L~~V~eEQqfL~~QedL~~DL~eDl~k~~etf~ 316 (424)
T PF03915_consen 281 ES-----------E-LQKVCEEQQFLKLQEDLLSDLKEDLKKASETFA 316 (424)
T ss_dssp HH-----------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-----------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2 223 34567776 4667777777777665544
No 7
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=62.48 E-value=92 Score=26.04 Aligned_cols=69 Identities=9% Similarity=0.280 Sum_probs=49.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----CHHHHHHHHHHHHHHHHHHHHHHh
Q 022286 77 AKQVNDFVKLLEDEIDKFNAFFLEKEEEYVIKWKELQDRVAKSKD----SNEELMKVGREIVDFHGEMVLLEN 145 (299)
Q Consensus 77 ~~~e~~F~~~L~~El~KVn~Fy~eke~el~~rl~~L~~~i~~~~~----s~e~~~~l~~~l~el~~el~~L~~ 145 (299)
.....++...+-.+|+.|..=....-.++..|++.|..+++...+ ..+++..++..+.++..++..++.
T Consensus 38 rr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~ 110 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQ 110 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445678899999999999999998889999999998888766532 233445555566666665555443
No 8
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=61.80 E-value=1.1e+02 Score=26.83 Aligned_cols=73 Identities=19% Similarity=0.263 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhhhcCCcccHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHhc
Q 022286 129 VGREIVDFHGEMVLLENYSALNYTGLVKILKKYDKRTGALIRLPFIKKVLQQPFYTTDVLNKLVKECEVRLDQLFS 204 (299)
Q Consensus 129 l~~~l~el~~el~~L~~f~~LN~tgf~KILKK~DK~tg~~l~~~f~~~V~~qpF~~~~~L~~Lv~~~E~l~~~lf~ 204 (299)
+-+.+.+=-..+...+.|...=.-+.+|++.||........+..-+.....+ ....|..|....+..|.+++.
T Consensus 113 I~~~v~~~P~~l~~a~~Fl~~yLp~~~~l~~kY~~l~~~~~~~~~~~~~l~e---~~~~L~~l~~~f~~~~~~l~~ 185 (199)
T PF10112_consen 113 IFKYVEKDPERLTQARKFLYYYLPTAVKLLEKYAELESQPVKSEEIKQSLEE---IEETLDTLNQAFEKDLDKLLE 185 (199)
T ss_pred HHHHHHHCHHhHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCChhHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556778889998888899999999999887665544322211111 135667777777777777764
No 9
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=33.66 E-value=4.8e+02 Score=27.21 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhhhc
Q 022286 125 ELMKVGREIVDFHGEMVLLENYSALNYTGLVKILKKYDKRT 165 (299)
Q Consensus 125 ~~~~l~~~l~el~~el~~L~~f~~LN~tgf~KILKK~DK~t 165 (299)
++.+++..|..+..|+..|-. +...+..=++.|+|..
T Consensus 350 ~i~~mReec~~l~~Elq~LlD----~ki~Ld~EI~~YRkLL 386 (546)
T KOG0977|consen 350 EIAKMREECQQLSVELQKLLD----TKISLDAEIAAYRKLL 386 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhc----hHhHHHhHHHHHHHHh
Confidence 466788888888888888877 7889999999999997
No 10
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=31.52 E-value=5.6e+02 Score=25.88 Aligned_cols=87 Identities=24% Similarity=0.328 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhhcc---------cCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhhhcCCcccHHHH
Q 022286 104 EYVIKWKELQDRVAKSK---------DSNEELMKVGREIVDFHGEMVLLENYSALNYTGLVKILKKYDKRTGALIRLPFI 174 (299)
Q Consensus 104 el~~rl~~L~~~i~~~~---------~s~e~~~~l~~~l~el~~el~~L~~f~~LN~tgf~KILKK~DK~tg~~l~~~f~ 174 (299)
.+..++++|++-++.++ +++..+..+.+.+...-.+|..++.|..-=.---.||- ... +
T Consensus 221 ~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiW-----------E~E-L 288 (426)
T smart00806 221 SLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIW-----------EAE-L 288 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHH-----------HHH-H
Confidence 45566667777666554 35677888999999999999999998654332222221 111 2
Q ss_pred HHh-hcCCCCC--hHHHHHHHHHHHHHHHHH
Q 022286 175 KKV-LQQPFYT--TDVLNKLVKECEVRLDQL 202 (299)
Q Consensus 175 ~~V-~~qpF~~--~~~L~~Lv~~~E~l~~~l 202 (299)
+.| ..|.|++ .+.+.+|.+.++.....+
T Consensus 289 ~~VcEEqqfL~lQedL~~DL~dDL~ka~eTf 319 (426)
T smart00806 289 DKVCEEQQFLTLQEDLIADLKEDLEKAEETF 319 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 4577876 466666666666554433
No 11
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.67 E-value=6.6e+02 Score=26.47 Aligned_cols=70 Identities=19% Similarity=0.190 Sum_probs=41.6
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhccc--------CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 022286 87 LEDEIDKF---NAFFLEKEEEYVIKWKELQDRVAKSKD--------SNEELMKVGREIVDFHGEMVLLENYSALNYTGLV 155 (299)
Q Consensus 87 L~~El~KV---n~Fy~eke~el~~rl~~L~~~i~~~~~--------s~e~~~~l~~~l~el~~el~~L~~f~~LN~tgf~ 155 (299)
++.|+.+| ..|..++++++..+.+.|...+.++.. ....-+..++.++-+..++..|.+ |+-
T Consensus 607 ~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~-------~iE 679 (741)
T KOG4460|consen 607 CREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRHLGN-------AIE 679 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhHHHHHHHHH-------HHH
Confidence 44444444 567777888888888888777766542 122224455666666666666665 444
Q ss_pred HHHHhHhh
Q 022286 156 KILKKYDK 163 (299)
Q Consensus 156 KILKK~DK 163 (299)
-.-+|+||
T Consensus 680 T~~~~~~K 687 (741)
T KOG4460|consen 680 TVTMKKDK 687 (741)
T ss_pred HHHHHHHH
Confidence 44555665
No 12
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=29.02 E-value=4.3e+02 Score=26.34 Aligned_cols=39 Identities=23% Similarity=0.435 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhc
Q 022286 81 NDFVKLLEDEIDKFNA-------FFLEKEEEYVIKWKELQDRVAKS 119 (299)
Q Consensus 81 ~~F~~~L~~El~KVn~-------Fy~eke~el~~rl~~L~~~i~~~ 119 (299)
......|+.+++++.. |+.+...|-..|.+.|++++...
T Consensus 225 k~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~ 270 (395)
T PF10267_consen 225 KESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDL 270 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4455566666666654 55555556566666666666544
No 13
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=27.53 E-value=6e+02 Score=24.93 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=11.0
Q ss_pred chhhhccCChHhHHHHHHhh
Q 022286 16 PEWRDKFLSYKDLKKQLKLI 35 (299)
Q Consensus 16 PEW~~~YIdYK~LKK~IK~~ 35 (299)
.+||-|+=.=+.+++-|...
T Consensus 216 kDWR~hleqm~~~~~~I~~~ 235 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESA 235 (359)
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 46666655555555555544
No 14
>COG5127 Vacuolar H+-ATPase V1 sector, subunit C [Energy production and conversion]
Probab=27.36 E-value=37 Score=32.73 Aligned_cols=20 Identities=40% Similarity=0.697 Sum_probs=17.5
Q ss_pred cCCCccccCCCCCCCCCCcc
Q 022286 266 SGSSTVSMFSLPPLQSTAVE 285 (299)
Q Consensus 266 ~~sst~~~~s~~~~~~~~~~ 285 (299)
+|+||+|+|-+||+.....|
T Consensus 30 ggrstvs~f~~P~Fk~~SLd 49 (383)
T COG5127 30 GGRSTVSRFLLPSFKGVSLD 49 (383)
T ss_pred cCccccccccCCCccccchH
Confidence 89999999999999876654
No 15
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=27.19 E-value=3.8e+02 Score=24.06 Aligned_cols=64 Identities=25% Similarity=0.305 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 022286 91 IDKFNAFFLEKEEEYVIKWKELQDRVAKSKDSNEELMKVGREIVDFHGEMVLLENYSALNYTGLVKILK 159 (299)
Q Consensus 91 l~KVn~Fy~eke~el~~rl~~L~~~i~~~~~s~e~~~~l~~~l~el~~el~~L~~f~~LN~tgf~KILK 159 (299)
++.+..-|......+..+++.++..+... ... .....+.++..++..|++...-+...+.+++.
T Consensus 116 l~~~~~~~~~~l~~l~~~l~~le~~~~~~-~~~----~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~ 179 (292)
T PF01544_consen 116 LDEIVDDYFEVLEELEDELDELEDELDDR-PSN----ELLRELFDLRRELSRLRRSLSPLREVLQRLLR 179 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHT-TTH----HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc-cch----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45566666667777778888888777221 112 12234555667777788887778888877777
No 16
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=26.35 E-value=5.1e+02 Score=23.77 Aligned_cols=67 Identities=10% Similarity=0.084 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 022286 79 QVNDFVKLLEDEIDKFNAFFLEKE---EEYVIKWKELQDRVAKSKDSNEELMKVGREIVDFHGEMVLLENYSA 148 (299)
Q Consensus 79 ~e~~F~~~L~~El~KVn~Fy~eke---~el~~rl~~L~~~i~~~~~s~e~~~~l~~~l~el~~el~~L~~f~~ 148 (299)
.+..|...+..|++.+..=+.... ..+..-++.|+.-+.+ +..+....+..+..+|+++.-|+..+.
T Consensus 29 ~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkq---a~~er~~~~~~i~r~~eey~~Lk~~in 98 (230)
T PF10146_consen 29 NEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQ---AESERNKRQEKIQRLYEEYKPLKDEIN 98 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777654333333 3334444455544433 234556677788889999998887654
No 17
>PF07067 DUF1340: Protein of unknown function (DUF1340); InterPro: IPR009774 This family consists of several hypothetical Streptococcus thermophilus bacteriophage proteins of around 235 residues in length. The function of this family is unknown.
Probab=25.78 E-value=2.6e+02 Score=25.25 Aligned_cols=107 Identities=15% Similarity=0.196 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 022286 81 NDFVKLLEDEIDKFNAFFLEKEEEYVIKWKELQDRVAKSKDSNEELMKVGREIVDFHGEMVLLENYSALNYTGLVKILKK 160 (299)
Q Consensus 81 ~~F~~~L~~El~KVn~Fy~eke~el~~rl~~L~~~i~~~~~s~e~~~~l~~~l~el~~el~~L~~f~~LN~tgf~KILKK 160 (299)
.+.|.-...||+-+..=+-.....++..++.+.. .+...++.+|..+|.|+..|---..+...|+
T Consensus 113 eeLfkq~~~Ei~~Lra~hpn~~~~YIm~vKgC~~---------q~An~i~taiNt~YtE~giltPrKvIQlEGL------ 177 (236)
T PF07067_consen 113 EELFKQYREEIEELRAAHPNNFTNYIMDVKGCSN---------QQANTIRTAINTCYTEIGILTPRKVIQLEGL------ 177 (236)
T ss_pred HHHHHHHHHHHHHHHHhCcchHHHHHHHhccccH---------HHHHHHHHHHHHHHHHHHhcchHHHHHHHhH------
Confidence 3455556666666655555554444444443332 3446788999999999988876666666664
Q ss_pred HhhhcCCcccHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHhcCCCCCC
Q 022286 161 YDKRTGALIRLPFIKKVLQQPFYTTDVLNKLVKECEVRLDQLFSMDEPSA 210 (299)
Q Consensus 161 ~DK~tg~~l~~~f~~~V~~qpF~~~~~L~~Lv~~~E~l~~~lf~~~~~~~ 210 (299)
++...+.++...-|-+.+--..|-+++.++|..+-+.|+..+
T Consensus 178 --------LSRELfgkiakyVfNkYEWpesLD~EVdRI~LEYRTKG~lG~ 219 (236)
T PF07067_consen 178 --------LSRELFGKIAKYVFNKYEWPESLDSEVDRIYLEYRTKGELGR 219 (236)
T ss_pred --------HHHHHHHHHHHHHhccccCchhhHhhhhhheeeeeccccccc
Confidence 222222222222233333334455678888888888777554
No 18
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=23.67 E-value=3.8e+02 Score=25.56 Aligned_cols=78 Identities=21% Similarity=0.137 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccC--HH---------HHHHHHHHHHHHHHHHHHHHhHH
Q 022286 80 VNDFVKLLEDEIDK-FNAFFLEKEEEYVIKWKELQDRVAKSKDS--NE---------ELMKVGREIVDFHGEMVLLENYS 147 (299)
Q Consensus 80 e~~F~~~L~~El~K-Vn~Fy~eke~el~~rl~~L~~~i~~~~~s--~e---------~~~~l~~~l~el~~el~~L~~f~ 147 (299)
+..|+... .|+.+ -+.|+..++..|..|+..|+.+++.+... ++ +-..++-.+.++|.++. .+=+
T Consensus 15 drrr~~~~-~e~~~l~~~f~elkeq~yk~kLa~Lq~~Leel~~g~~~eYl~~~~~L~~~~kerl~~aely~e~~--~e~v 91 (291)
T KOG4466|consen 15 DRRRANEE-SEMSNLEKQFSELKEQMYKDKLAQLQAQLEELGQGTAPEYLKRVKKLDESRKERLRVAELYREYC--VERV 91 (291)
T ss_pred HHhhhhhh-hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 34455444 44444 47799999999999999999999877521 11 11233444556666543 2334
Q ss_pred HHHHHHHHHHHHh
Q 022286 148 ALNYTGLVKILKK 160 (299)
Q Consensus 148 ~LN~tgf~KILKK 160 (299)
..+|.-=-|--||
T Consensus 92 ~~eYe~E~~aAk~ 104 (291)
T KOG4466|consen 92 EREYECEIKAAKK 104 (291)
T ss_pred HHHHHHHHHHHHH
Confidence 5555544444444
No 19
>KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism]
Probab=22.92 E-value=33 Score=35.72 Aligned_cols=47 Identities=21% Similarity=0.221 Sum_probs=36.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhHhhhcCCcc--cHHHHHHhhcCCC
Q 022286 136 FHGEMVLLENYSALNYTGLVKILKKYDKRTGALI--RLPFIKKVLQQPF 182 (299)
Q Consensus 136 l~~el~~L~~f~~LN~tgf~KILKK~DK~tg~~l--~~~f~~~V~~qpF 182 (299)
+...+..+++|..+|++++.|+.||+||..+... +--|...|..+.+
T Consensus 7 ~~~~l~~~~~~~~~~~~~ll~~p~~~~~~l~~~~e~~c~y~~~vm~~yw 55 (586)
T KOG1281|consen 7 IVNTLLQYRSLLVLNRTPLLLLPKKLDKLLHSSEEARCAYVILVMAVYW 55 (586)
T ss_pred HHHHHHHhhhhheeehhhhhhcchhhhhhcCCcHHHHHHHHHHHHHHHH
Confidence 3448888999999999999999999999998873 4455555554433
No 20
>PF15389 DUF4612: Domain of unknown function (DUF4612)
Probab=22.40 E-value=73 Score=26.30 Aligned_cols=19 Identities=26% Similarity=0.555 Sum_probs=15.8
Q ss_pred HHhhHHHHHHHHHHHHHHH
Q 022286 76 EAKQVNDFVKLLEDEIDKF 94 (299)
Q Consensus 76 ~~~~e~~F~~~L~~El~KV 94 (299)
+.....+||++|+.-|++=
T Consensus 87 iS~SQqdFFRMLDeKIekG 105 (115)
T PF15389_consen 87 ISESQQDFFRMLDEKIEKG 105 (115)
T ss_pred hhHHHHHHHHHHHHHHHcC
Confidence 4677899999999988873
No 21
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=22.33 E-value=4.3e+02 Score=22.83 Aligned_cols=110 Identities=15% Similarity=0.167 Sum_probs=63.1
Q ss_pred HHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 022286 76 EAKQVNDFVKLLE-DEIDKFNAFFLEKEEEYVIKWKELQDRVAKSKDSNEELMKVGREIVDFHGEMVLLENYSALNYTGL 154 (299)
Q Consensus 76 ~~~~e~~F~~~L~-~El~KVn~Fy~eke~el~~rl~~L~~~i~~~~~s~e~~~~l~~~l~el~~el~~L~~f~~LN~tgf 154 (299)
...+-.+|..++. .++..+..-|...-.|+..-++.+.. .++..+...+.. ..|+..|.+|..-+-.-+
T Consensus 4 L~~d~~dfl~lIp~~~i~~i~~~Y~~~D~efq~~~~yl~s---------~~f~~l~~~l~~-~pE~~~l~~yL~~~gldv 73 (179)
T PF06757_consen 4 LQEDFQDFLDLIPMEEIQDIVQRYYLEDAEFQAAVRYLNS---------SEFKQLWQQLEA-LPEVKALLDYLESAGLDV 73 (179)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHcCHHHHHHHHHHcC---------hHHHHHHHHHHc-CHHHHHHHHHHHHCCCCH
Confidence 4556677777664 34555555555555555555555432 234444444444 556777777877777777
Q ss_pred HHHHHhHhhhcCCcccHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 022286 155 VKILKKYDKRTGALIRLPFIKKVLQQPFYTTDVLNKLVKECEVRL 199 (299)
Q Consensus 155 ~KILKK~DK~tg~~l~~~f~~~V~~qpF~~~~~L~~Lv~~~E~l~ 199 (299)
...+.......|...-.|.. .........++.+++++.+++
T Consensus 74 ~~~i~~i~~~l~~~~~~p~~----~~~~~~~~g~~g~~~di~~~l 114 (179)
T PF06757_consen 74 YYYINQINDLLGLPPLNPTP----SLSCSRGGGLNGFVDDILALL 114 (179)
T ss_pred HHHHHHHHHHHcCCcCCCCc----ccccccCCCHHHHHHHHHHHC
Confidence 77777777777654321110 000115667788888777654
No 22
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=21.92 E-value=4e+02 Score=21.21 Aligned_cols=42 Identities=14% Similarity=0.309 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHH
Q 022286 102 EEEYVIKWKELQDRVAKSKDSNEELMKVGREIVDFHGEMVLLE 144 (299)
Q Consensus 102 e~el~~rl~~L~~~i~~~~~s~e~~~~l~~~l~el~~el~~L~ 144 (299)
..+...|+..++.++..+ ++..++..|+..+.++-+++..|.
T Consensus 44 ~~~~~~Rl~~lE~~l~~L-Pt~~dv~~L~l~l~el~G~~~~l~ 85 (106)
T PF10805_consen 44 LDEHDRRLQALETKLEHL-PTRDDVHDLQLELAELRGELKELS 85 (106)
T ss_pred HHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHhHHHHHH
Confidence 334567777777777665 355667777777777777777665
No 23
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=21.86 E-value=6.8e+02 Score=23.70 Aligned_cols=70 Identities=10% Similarity=0.137 Sum_probs=43.2
Q ss_pred HHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cCHHHHHHHHHHHHHHHHHHHHHH
Q 022286 75 EEAKQVNDFVKLLE-DEIDKFNAFFLEKEEEYVIKWKELQDRVAKSK--DSNEELMKVGREIVDFHGEMVLLE 144 (299)
Q Consensus 75 ~~~~~e~~F~~~L~-~El~KVn~Fy~eke~el~~rl~~L~~~i~~~~--~s~e~~~~l~~~l~el~~el~~L~ 144 (299)
++..++..|-..+. .|..++..=+.+..-++..+..++.+.+-+.. ++..++..+.+.|.++-+++..|+
T Consensus 220 Wi~~ae~~~~~~~~S~ef~~~~g~~~~a~m~~r~~~~~~~e~~L~~l~lPTr~evd~l~k~l~eLrre~r~Lk 292 (293)
T PF09712_consen 220 WIDAAEEAYEELFRSEEFAQAYGQLVNALMDLRKQQQEVVEEYLRSLNLPTRSEVDELYKRLHELRREVRALK 292 (293)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555555443 34555555555556666666666555443321 567788888888888888887765
No 24
>smart00526 H15 Domain in histone families 1 and 5.
Probab=20.04 E-value=55 Score=23.51 Aligned_cols=20 Identities=40% Similarity=0.459 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhcCCCccccC
Q 022286 254 TLSALRVLKEIRSGSSTVSMF 274 (299)
Q Consensus 254 t~~al~~~~~~~~~sst~~~~ 274 (299)
.+.|+..++| |+|||...+.
T Consensus 11 I~eAI~~l~e-r~GsS~~aI~ 30 (66)
T smart00526 11 ITEAISALKE-RKGSSLQAIK 30 (66)
T ss_pred HHHHHHHcCC-CCCCCHHHHH
Confidence 5689999999 9999876543
Done!