Query 022286
Match_columns 299
No_of_seqs 200 out of 987
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 03:02:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022286.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022286hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3okq_A BUD site selection prot 81.2 21 0.00072 29.3 11.0 110 81-201 9-122 (141)
2 1deq_A Fibrinogen (alpha chain 31.9 3.3E+02 0.011 25.7 10.7 54 89-145 102-155 (390)
3 3pp5_A BRK1, protein brick1; t 27.6 1.7E+02 0.006 21.1 6.5 39 80-118 18-56 (73)
4 3t98_B Nucleoporin NUP58/NUP45 27.6 2E+02 0.0067 21.6 9.6 67 80-149 6-76 (93)
5 3p8c_E Probable protein brick1 27.3 1.8E+02 0.0062 21.1 6.5 39 80-118 18-56 (75)
6 2a3d_A Protein (de novo three- 20.9 49 0.0017 23.0 1.9 39 103-141 5-43 (73)
7 2bbh_A Divalent cation transpo 19.0 3.9E+02 0.013 22.7 8.0 65 92-161 178-242 (269)
8 2l5g_B Putative uncharacterize 18.0 2.1E+02 0.0072 18.5 4.7 28 84-115 11-38 (42)
9 2bn5_B U1 small nuclear ribonu 17.9 58 0.002 18.4 1.4 14 270-283 6-19 (26)
10 2p2u_A HOST-nuclease inhibitor 17.3 3.8E+02 0.013 22.0 7.1 14 143-156 68-81 (171)
No 1
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=81.23 E-value=21 Score=29.25 Aligned_cols=110 Identities=15% Similarity=0.240 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 022286 81 NDFVKLLEDEIDKFNAFFLEKEEEYVIKWKELQDRVAK--SKDSNEELMKVGREIVDFHGEMVLLENYSALNYTGLVKIL 158 (299)
Q Consensus 81 ~~F~~~L~~El~KVn~Fy~eke~el~~rl~~L~~~i~~--~~~s~e~~~~l~~~l~el~~el~~L~~f~~LN~tgf~KIL 158 (299)
..|+..-...|+.-..=...+..++..-++.|...+.. +.+++..+..+.+.+...-.+|..|+.|...=.-...||=
T Consensus 9 R~y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiW 88 (141)
T 3okq_A 9 RMYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTW 88 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHH
Confidence 34555555555544444444555555555555555432 2356788899999999999999999999877666665553
Q ss_pred HhHhhhcCCcccHHHHHHhhcCCCCC--hHHHHHHHHHHHHHHHH
Q 022286 159 KKYDKRTGALIRLPFIKKVLQQPFYT--TDVLNKLVKECEVRLDQ 201 (299)
Q Consensus 159 KK~DK~tg~~l~~~f~~~V~~qpF~~--~~~L~~Lv~~~E~l~~~ 201 (299)
-+ ..-.-+..|.||+ .+.+..|...++.....
T Consensus 89 E~-----------EL~~VceEQqfl~~QedL~~DL~eDL~ka~et 122 (141)
T 3okq_A 89 EA-----------ELDKVCEEQQFLTLQEELILDLKEDLGKALET 122 (141)
T ss_dssp HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2222234577876 46666666666555443
No 2
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=31.92 E-value=3.3e+02 Score=25.71 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHh
Q 022286 89 DEIDKFNAFFLEKEEEYVIKWKELQDRVAKSKDSNEELMKVGREIVDFHGEMVLLEN 145 (299)
Q Consensus 89 ~El~KVn~Fy~eke~el~~rl~~L~~~i~~~~~s~e~~~~l~~~l~el~~el~~L~~ 145 (299)
.+.+..+.-|.+-..++..++..|+..|..-. ..+..|+..|.+++.+|..|+.
T Consensus 102 ~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~---~~ir~Lq~~l~~q~~kiqRLE~ 155 (390)
T 1deq_A 102 AKANNNDNTFKQINEDLRSRIEILRRKVIEQV---QRINLLQKNVRDQLVDMKRLEV 155 (390)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555556667777777776654321 2556666667777777776664
No 3
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=27.59 E-value=1.7e+02 Score=21.09 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022286 80 VNDFVKLLEDEIDKFNAFFLEKEEEYVIKWKELQDRVAK 118 (299)
Q Consensus 80 e~~F~~~L~~El~KVn~Fy~eke~el~~rl~~L~~~i~~ 118 (299)
..+|...+..-|-++-.|...=..-|..|+..|..++..
T Consensus 18 nRe~ie~is~~I~~~v~FLN~F~~sce~KLa~ln~kL~~ 56 (73)
T 3pp5_A 18 QREFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTI 56 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999998888888888888877654
No 4
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=27.58 E-value=2e+02 Score=21.63 Aligned_cols=67 Identities=9% Similarity=0.175 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHH----HHHHHHHHHHHHHHHHHHHhHHHH
Q 022286 80 VNDFVKLLEDEIDKFNAFFLEKEEEYVIKWKELQDRVAKSKDSNEE----LMKVGREIVDFHGEMVLLENYSAL 149 (299)
Q Consensus 80 e~~F~~~L~~El~KVn~Fy~eke~el~~rl~~L~~~i~~~~~s~e~----~~~l~~~l~el~~el~~L~~f~~L 149 (299)
-.+||..+-.++++-=..|....+++...+..+... .. -++.+ +..+-..|+.+-..+..|...+.-
T Consensus 6 P~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~-~~--~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~ 76 (93)
T 3t98_B 6 PADYFRVLVQQFEVQLQQYRQQIEELENHLATQANN-SH--ITPQDLSMAMQKIYQTFVALAAQLQSIHENVKV 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH-TT--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345776665555554444444433333333322210 00 12222 334445566666666666655443
No 5
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=27.27 E-value=1.8e+02 Score=21.13 Aligned_cols=39 Identities=10% Similarity=0.323 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022286 80 VNDFVKLLEDEIDKFNAFFLEKEEEYVIKWKELQDRVAK 118 (299)
Q Consensus 80 e~~F~~~L~~El~KVn~Fy~eke~el~~rl~~L~~~i~~ 118 (299)
..+|...+..-|-++-.|...=..-+..|+..|..++..
T Consensus 18 nRe~ie~in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~ 56 (75)
T 3p8c_E 18 NREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTA 56 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577999999999999999998888888888888877654
No 6
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=20.93 E-value=49 Score=23.01 Aligned_cols=39 Identities=23% Similarity=0.390 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHH
Q 022286 103 EEYVIKWKELQDRVAKSKDSNEELMKVGREIVDFHGEMV 141 (299)
Q Consensus 103 ~el~~rl~~L~~~i~~~~~s~e~~~~l~~~l~el~~el~ 141 (299)
.++..|+..+..++..+..|..++....+.+..|-.++.
T Consensus 5 aefkqrlaaiktrlqalggseaelaafekeiaafeselq 43 (73)
T 2a3d_A 5 AEFKQRLAAIKTRLQALGGSEAELAAFEKEIAAFESELQ 43 (73)
T ss_dssp HHHHHHHHHHHHHHHHCSSGGGTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 355666666666665554444455555555555544443
No 7
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=18.98 E-value=3.9e+02 Score=22.73 Aligned_cols=65 Identities=11% Similarity=0.009 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhH
Q 022286 92 DKFNAFFLEKEEEYVIKWKELQDRVAKSKDSNEELMKVGREIVDFHGEMVLLENYSALNYTGLVKILKKY 161 (299)
Q Consensus 92 ~KVn~Fy~eke~el~~rl~~L~~~i~~~~~s~e~~~~l~~~l~el~~el~~L~~f~~LN~tgf~KILKK~ 161 (299)
+.+..-|..-...+..+++.|++++-.- . -......+..+-+++..|+++..=+...+.++++..
T Consensus 178 d~ivd~y~~~l~~i~~~id~lE~~v~~~---~--~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 242 (269)
T 2bbh_A 178 DALVDDYFVLLEKIDDEIDVLEEEVLER---P--EKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDV 242 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC---C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444445555666777777777654321 1 112334678888899999999999999999998753
No 8
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=18.02 E-value=2.1e+02 Score=18.47 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022286 84 VKLLEDEIDKFNAFFLEKEEEYVIKWKELQDR 115 (299)
Q Consensus 84 ~~~L~~El~KVn~Fy~eke~el~~rl~~L~~~ 115 (299)
+..+++||+|+. ++..++..++.+|++.
T Consensus 11 I~kVdrEI~Kte----~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 11 MDRVDREITMVE----QQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 566788888864 4666777777777654
No 9
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=17.88 E-value=58 Score=18.43 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=9.6
Q ss_pred ccccCCCCCCCCCC
Q 022286 270 TVSMFSLPPLQSTA 283 (299)
Q Consensus 270 t~~~~s~~~~~~~~ 283 (299)
-.++||+||-.+.|
T Consensus 6 hhnmfsvppppi~g 19 (26)
T 2bn5_B 6 HHNMFSVPPPPILG 19 (26)
T ss_dssp CCCCCSCCCCSCCC
T ss_pred cCceecCCCCCccc
Confidence 35789998765543
No 10
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=17.26 E-value=3.8e+02 Score=22.00 Aligned_cols=14 Identities=29% Similarity=0.539 Sum_probs=9.5
Q ss_pred HHhHHHHHHHHHHH
Q 022286 143 LENYSALNYTGLVK 156 (299)
Q Consensus 143 L~~f~~LN~tgf~K 156 (299)
|+.|+..|..-+-+
T Consensus 68 l~~y~e~~r~elf~ 81 (171)
T 2p2u_A 68 VATFATLNKTEMFK 81 (171)
T ss_dssp HHHHHHHTHHHHCC
T ss_pred HHHHHHHhHHHhcC
Confidence 56677778776643
Done!