BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022287
         (299 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
           Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
           BOUND To The Transport Signal Sequence Of Vesicular
           Stomatitis Virus Glycoprotein
 pdb|3EGX|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
           Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
           Bound To The Transport Signal Sequence Of The Snare
           Protein Bet1
          Length = 748

 Score = 30.4 bits (67), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 79  WLFSKRKGSKSLEAYSCIIDIYWDLSSAKFGSGPEPLEGFYVSVVVDRQMVLLLGDMR 136
            L++  KG + +  ++  + +   L+    G+  + + G   ++ VDR M   L D R
Sbjct: 462 LLYTSSKGERRIRVHTLCLPVVSTLNDVFLGADVQAISGLLANMAVDRSMTASLSDAR 519


>pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
           Complexed With The Snare Protein Sec22b
 pdb|2NUT|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
           Complexed With The Snare Protein Sec22b
          Length = 753

 Score = 30.4 bits (67), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 79  WLFSKRKGSKSLEAYSCIIDIYWDLSSAKFGSGPEPLEGFYVSVVVDRQMVLLLGDMR 136
            L++  KG + +  ++  + +   L+    G+  + + G   ++ VDR M   L D R
Sbjct: 467 LLYTSSKGERRIRVHTLCLPVVSTLNDVFLGADVQAISGLLANMAVDRSMTASLSDAR 524


>pdb|2O5X|H Chain H, Crystal Structure Of 1e9 Leuh47trpARGH100TRP, AN
           ENGINEERED DIELS- Alderase Fab With Nm Steroid-Binding
           Affinity
 pdb|2O5Y|H Chain H, Crystal Structure Of The 1e9 Leuh47trpARGH100TRP FAB
           PROGESTERONE Complex
 pdb|2O5Z|H Chain H, Crystal Structure Of The 1e9 Leuh47trpARGH100TRP FAB
           5-Beta- Androstane-3,17-Dione Complex
          Length = 227

 Score = 28.1 bits (61), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 13/70 (18%)

Query: 46  ITITWSKNLMGQGLSVGIDDASNQCLCKVDIKPWLFSKRKGSKSLEAYSCIIDIYWDLSS 105
            TI W+ +  GQG SV +  AS +      + P   S +  S    A  C++  Y+    
Sbjct: 100 TTIVWAMDYWGQGTSVTVSSASTKGPSVFPLAP---SSKSTSGGTAALGCLVKDYF---- 152

Query: 106 AKFGSGPEPL 115
                 PEP+
Sbjct: 153 ------PEPV 156


>pdb|4GPS|A Chain A, Crystal Structure Of K. Lactis Dxo1 (Ydr370c)
 pdb|4GPU|A Chain A, Crystal Structure Of K. Lactis Dxo1 (Ydr370c) In Complex
           With Manganese
          Length = 423

 Score = 27.3 bits (59), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 2/85 (2%)

Query: 79  WLFSKRKGSKSLEAYSCIIDIYWDLSSAKFG-SGPEPLEGFYVSVVVDRQMVLLLGDMRK 137
           W  + RK     E  + I D  W+  + K    G +  +G+   V +DR ++  L  + K
Sbjct: 103 WNEASRKPRLRPEVCTYIKDSKWENKAVKDSFIGIDLTKGYDDYVPLDRNVLNSLV-ILK 161

Query: 138 EAFKKTNATPVPSNAVFVAKREHLF 162
           EA+++   T  P    FV+ R H+ 
Sbjct: 162 EAYQRYEKTLNPEKTTFVSLRHHII 186


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.444 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,865,026
Number of Sequences: 62578
Number of extensions: 356064
Number of successful extensions: 496
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 494
Number of HSP's gapped (non-prelim): 4
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)