BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022287
         (299 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B1GZU1|COAX_UNCTG Type III pantothenate kinase OS=Uncultured termite group 1
           bacterium phylotype Rs-D17 GN=coaX PE=3 SV=1
          Length = 259

 Score = 32.3 bits (72), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 11/76 (14%)

Query: 112 PEPLEGFYVSVVVDRQM----VLLLGDMRKEAFKKTN------ATPVPS-NAVFVAKREH 160
           PEPL+ + +S V +R       LL+  +  + F          A+ VPS NAVF    + 
Sbjct: 26  PEPLKVWIMSTVKERTFDEYATLLMNMLFYDGFDAKQLSNFAVASVVPSLNAVFEELIKK 85

Query: 161 LFGKKVFFTKAQFCNG 176
            FG+K FF  ++ C G
Sbjct: 86  YFGEKTFFVNSKNCGG 101


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.136    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,478,305
Number of Sequences: 539616
Number of extensions: 4573849
Number of successful extensions: 7576
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7574
Number of HSP's gapped (non-prelim): 3
length of query: 299
length of database: 191,569,459
effective HSP length: 117
effective length of query: 182
effective length of database: 128,434,387
effective search space: 23375058434
effective search space used: 23375058434
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)