Query 022287
Match_columns 299
No_of_seqs 116 out of 144
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 02:22:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022287.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022287hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05910 DUF868: Plant protein 100.0 2E-120 5E-125 845.8 32.6 267 25-298 1-274 (274)
2 cd00110 LamG Laminin G domain; 92.0 1.8 3.8E-05 35.0 9.4 81 115-227 45-127 (151)
3 PF05910 DUF868: Plant protein 91.2 1.1 2.5E-05 43.1 8.5 75 33-113 143-224 (274)
4 PF02210 Laminin_G_2: Laminin 75.6 9.8 0.00021 29.5 6.0 48 175-227 52-102 (128)
5 PF14099 Polysacc_lyase: Polys 70.8 6.4 0.00014 34.9 4.3 35 175-209 150-184 (224)
6 COG0139 HisI Phosphoribosyl-AM 69.3 13 0.00028 31.6 5.5 63 116-188 16-83 (111)
7 PRK00051 hisI phosphoribosyl-A 67.3 21 0.00045 30.9 6.4 59 116-188 12-79 (125)
8 smart00282 LamG Laminin G doma 66.9 62 0.0013 26.0 9.0 32 171-208 57-88 (135)
9 PF06439 DUF1080: Domain of Un 56.4 28 0.00061 29.4 5.4 35 175-214 125-159 (185)
10 PF06905 FAIM1: Fas apoptotic 44.7 1.4E+02 0.0029 27.2 8.1 43 176-224 14-58 (177)
11 PF00054 Laminin_G_1: Laminin 41.3 2E+02 0.0043 23.5 10.0 49 174-227 50-101 (131)
12 PRK02759 bifunctional phosphor 38.6 95 0.0021 28.9 6.3 58 117-188 15-81 (203)
13 PF05506 DUF756: Domain of unk 35.7 2.1E+02 0.0045 22.2 7.8 35 205-239 35-73 (89)
14 COG0832 UreB Urea amidohydrola 35.5 67 0.0015 27.1 4.3 61 123-184 8-81 (106)
15 PLN02346 histidine biosynthesi 32.6 1.1E+02 0.0023 29.8 5.7 58 117-188 53-119 (271)
16 KOG2463 Predicted RNA-binding 28.4 71 0.0015 32.1 3.9 24 197-220 274-298 (376)
17 TIGR00481 Raf kinase inhibitor 27.2 3.2E+02 0.007 23.4 7.3 88 41-131 11-115 (141)
18 KOG0273 Beta-transducin family 27.1 53 0.0012 34.4 2.9 44 192-235 255-306 (524)
19 smart00210 TSPN Thrombospondin 26.7 1.1E+02 0.0023 26.9 4.4 44 175-226 115-158 (184)
20 TIGR02148 Fibro_Slime fibro-sl 25.5 69 0.0015 26.3 2.7 17 193-209 27-43 (90)
21 PRK13202 ureB urease subunit b 24.9 81 0.0017 26.6 3.1 60 124-184 9-82 (104)
22 PF12101 DUF3577: Protein of u 22.7 1.7E+02 0.0036 25.8 4.7 13 196-208 117-129 (137)
23 PF07691 PA14: PA14 domain; I 22.4 4.1E+02 0.0089 21.3 8.9 14 175-188 107-120 (145)
24 KOG0289 mRNA splicing factor [ 20.6 1.1E+02 0.0024 31.9 3.7 41 97-138 370-421 (506)
No 1
>PF05910 DUF868: Plant protein of unknown function (DUF868); InterPro: IPR008586 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=100.00 E-value=2.5e-120 Score=845.81 Aligned_cols=267 Identities=62% Similarity=1.090 Sum_probs=250.5
Q ss_pred cCCcceEEEEEEeEecCccEEEEEEeeCCcCCCceEEEEcCCC--ccceecccccccceeeecCceeeEecceeeEEEec
Q 022287 25 KNAQNLVTSVYQARIRGRSCLITITWSKNLMGQGLSVGIDDAS--NQCLCKVDIKPWLFSKRKGSKSLEAYSCIIDIYWD 102 (299)
Q Consensus 25 ~s~q~~vT~vY~~~l~g~~~litvTWsk~~~g~~Lsv~v~~~~--~~~~~k~~~kp~~fwkkkGsK~~~~~~~~v~v~WD 102 (299)
+++||+|||||||+|+|++++||||||||+|||+|+|+|+++. ++++||++++||+||||||||+|++++++|+||||
T Consensus 1 ~s~q~~vT~vY~~~l~g~~~litvTWsk~~~g~~Lsv~v~~~~~~~~~~~k~~~~p~~fwkkkGsKsf~~~~~~v~v~WD 80 (274)
T PF05910_consen 1 PSPQNSVTCVYQTKLSGKPRLITVTWSKNLLGQSLSVSVDDASGSSSSSCKVDLKPWLFWKKKGSKSFEVDGPKVDVFWD 80 (274)
T ss_pred CCCCceEEEEEEEEecCCceEEEEEEeCCccCCeEEEEEeCccccccccccccCccceeEecCCccccccCCceEEEEeC
Confidence 3689999999999999999999999999999999999999976 57899999999999999999999999999999999
Q ss_pred CCCcccCCCCccccccEEEEEECceEEEEecCccHHHhhhccCCCCCCceeEEEeeeeeeceeeeeeeeEEecCCceEEE
Q 022287 103 LSSAKFGSGPEPLEGFYVSVVVDRQMVLLLGDMRKEAFKKTNATPVPSNAVFVAKREHLFGKKVFFTKAQFCNGGQIHDL 182 (299)
Q Consensus 103 ls~Akf~~~PEP~sgfYVavv~d~EvvLlLGDl~~ea~~r~~~~~~~~~~~lvsRrEhv~G~~~~~Tka~F~e~G~~HeI 182 (299)
||+|||+++|||++|||||||+|+||||+||||++|||||++++|++.+++||+|||||||++.|+|||||+|+|++|||
T Consensus 81 Ls~Akf~s~PEP~sgfYVavv~d~EvvLllGDl~~ea~~rt~~~~~~~~~~LvsRrEhv~G~~~~~Tka~F~e~G~~HeI 160 (274)
T PF05910_consen 81 LSSAKFGSGPEPVSGFYVAVVVDGEVVLLLGDLKKEAYKRTKSRPSPSEAVLVSRREHVFGKKVYSTKARFCEGGKEHEI 160 (274)
T ss_pred ccccccCCCCCCCCccEEEEEECCEEEEEecCchhHHHhhccCCCCccceeEEEEEEEEEEEEEEeeEEEEcCCCcEEEE
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred EEEe--cCCCCCCCeEEEEEcCEEEEEEeeecccccceeEEEECCeEEEEEEEeeeeccc--CCCCcEEEEEEeccccc-
Q 022287 183 VIEC--DTHGMNDPCLMVRVDGKSVMKVKHLRWKFRGNHTILVDGLPVEVFWDVHNWLFG--ASVGNAVFMFKTCLSAE- 257 (299)
Q Consensus 183 ~Iec--~~~g~~dp~l~V~VDgk~v~~VkrL~WkFRGNeti~vdg~~V~V~WDVHdWlF~--~~~g~AVFmFr~~~~~~- 257 (299)
+||| +.+|.+||+|||+||||+|||||||||||||||||+|||+|||||||||||||+ +++|||||||||++++|
T Consensus 161 ~Iec~~~~~g~~dp~l~V~VDgk~v~~VkrL~WkFRGNqti~vdg~~V~V~WDVHdWlF~~~~~~~~AVFmFr~~~~~e~ 240 (274)
T PF05910_consen 161 SIECGGETGGPKDPELWVSVDGKKVVQVKRLRWKFRGNQTIFVDGLPVQVFWDVHDWLFNNGPGSGHAVFMFRPRSGLES 240 (274)
T ss_pred EEEEeccCCCCCCceEEEEECCEEEEEEEEeeecccCceEEEECCeEEEEEEEhhhhhhccCCCCCceEEEEEecCCccc
Confidence 9999 456788999999999999999999999999999999999999999999999999 66789999999999987
Q ss_pred ccccCCCCCCCCCCCCcccccccccCCCCCceEEEEEEeec
Q 022287 258 KLWASGPLSDPNTLPWSFSQRFLDSKSQSLGFSLILYAWKN 298 (299)
Q Consensus 258 ~lw~~~~~~~~s~~~w~~~~~~~~~~~~~~gFsL~lyAwK~ 298 (299)
++|.+++.. +.++.+++.+.++.||||||||||+
T Consensus 241 ~~~~~~~~~-------~~~~~~~~~~~~~~gFsLllyAwK~ 274 (274)
T PF05910_consen 241 RLWLEESSS-------SSSSRFSSSSSSGSGFSLLLYAWKN 274 (274)
T ss_pred ccccccccc-------ccccccccccCCCCCEEEEEEEEcC
Confidence 689887643 2224455566678999999999996
No 2
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=91.98 E-value=1.8 Score=35.04 Aligned_cols=81 Identities=22% Similarity=0.287 Sum_probs=55.6
Q ss_pred ccccEEEEEECceEEEEecCccHHHhhhccCCCCCCceeEEEeeeeeeceeeeeeeeEEecCCceEEEEEEecCCCCCCC
Q 022287 115 LEGFYVSVVVDRQMVLLLGDMRKEAFKKTNATPVPSNAVFVAKREHLFGKKVFFTKAQFCNGGQIHDLVIECDTHGMNDP 194 (299)
Q Consensus 115 ~sgfYVavv~d~EvvLlLGDl~~ea~~r~~~~~~~~~~~lvsRrEhv~G~~~~~Tka~F~e~G~~HeI~Iec~~~g~~dp 194 (299)
...|+.+-+.++.+.+.+....+ . ..+.+..++ ..|+.|.|.|+... .
T Consensus 45 ~~~~~~l~l~~g~l~~~~~~g~~--------------~------------~~~~~~~~v-~dg~Wh~v~i~~~~-----~ 92 (151)
T cd00110 45 GGDFLALELEDGRLVLRYDLGSG--------------S------------LVLSSKTPL-NDGQWHSVSVERNG-----R 92 (151)
T ss_pred CCCEEEEEEECCEEEEEEcCCcc--------------c------------EEEEccCcc-CCCCEEEEEEEECC-----C
Confidence 55676666779998888776410 0 112222334 47999999999874 5
Q ss_pred eEEEEEcCEEEEEEeeecc--cccceeEEEECCeE
Q 022287 195 CLMVRVDGKSVMKVKHLRW--KFRGNHTILVDGLP 227 (299)
Q Consensus 195 ~l~V~VDgk~v~~VkrL~W--kFRGNeti~vdg~~ 227 (299)
.+.+.|||+.+++...-.. ....+..|+++|.|
T Consensus 93 ~~~l~VD~~~~~~~~~~~~~~~~~~~~~~~iGg~~ 127 (151)
T cd00110 93 SVTLSVDGERVVESGSPGGSALLNLDGPLYLGGLP 127 (151)
T ss_pred EEEEEECCccEEeeeCCCCceeecCCCCeEEcCCC
Confidence 8999999997776655444 36677778888865
No 3
>PF05910 DUF868: Plant protein of unknown function (DUF868); InterPro: IPR008586 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=91.21 E-value=1.1 Score=43.06 Aligned_cols=75 Identities=24% Similarity=0.438 Sum_probs=52.3
Q ss_pred EEEEeE--e--cCccEEEEEEeeCCcC---CCceEEEEcCCCccceecccccccceeeecCceeeEecceeeEEEecCCC
Q 022287 33 SVYQAR--I--RGRSCLITITWSKNLM---GQGLSVGIDDASNQCLCKVDIKPWLFSKRKGSKSLEAYSCIIDIYWDLSS 105 (299)
Q Consensus 33 ~vY~~~--l--~g~~~litvTWsk~~~---g~~Lsv~v~~~~~~~~~k~~~kp~~fwkkkGsK~~~~~~~~v~v~WDls~ 105 (299)
.+|-|+ + .|+..-|.|-=....- ...|.|+||.-- . +.+| .|=||=||+.++.+||..|+|+||+..
T Consensus 143 ~~~~Tka~F~e~G~~HeI~Iec~~~~~g~~dp~l~V~VDgk~---v--~~Vk-rL~WkFRGNqti~vdg~~V~V~WDVHd 216 (274)
T PF05910_consen 143 KVYSTKARFCEGGKEHEISIECGGETGGPKDPELWVSVDGKK---V--VQVK-RLRWKFRGNQTIFVDGLPVQVFWDVHD 216 (274)
T ss_pred EEEeeEEEEcCCCcEEEEEEEEeccCCCCCCceEEEEECCEE---E--EEEE-EeeecccCceEEEECCeEEEEEEEhhh
Confidence 456555 4 6666666666532333 367889998621 1 2222 577999999999999999999999999
Q ss_pred cccCCCCc
Q 022287 106 AKFGSGPE 113 (299)
Q Consensus 106 Akf~~~PE 113 (299)
==|+++|-
T Consensus 217 WlF~~~~~ 224 (274)
T PF05910_consen 217 WLFNNGPG 224 (274)
T ss_pred hhhccCCC
Confidence 88874443
No 4
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=75.58 E-value=9.8 Score=29.47 Aligned_cols=48 Identities=29% Similarity=0.396 Sum_probs=36.6
Q ss_pred cCCceEEEEEEecCCCCCCCeEEEEEcCEEEEEEeeeccc--c-cceeEEEECCeE
Q 022287 175 NGGQIHDLVIECDTHGMNDPCLMVRVDGKSVMKVKHLRWK--F-RGNHTILVDGLP 227 (299)
Q Consensus 175 e~G~~HeI~Iec~~~g~~dp~l~V~VDgk~v~~VkrL~Wk--F-RGNeti~vdg~~ 227 (299)
..|+.|.|.|.... .++.+.||+....+....... . -....|+++|.|
T Consensus 52 ~dg~wh~v~i~~~~-----~~~~l~Vd~~~~~~~~~~~~~~~~~~~~~~l~iGg~~ 102 (128)
T PF02210_consen 52 NDGQWHKVSISRDG-----NRVTLTVDGQSVSSESLPSSSSDSLDPDGSLYIGGLP 102 (128)
T ss_dssp TSSSEEEEEEEEET-----TEEEEEETTSEEEEEESSSTTHHCBESEEEEEESSTT
T ss_pred cccceeEEEEEEee-----eeEEEEecCccceEEeccccceecccCCCCEEEeccc
Confidence 57999999998875 579999999999999887775 2 233336666654
No 5
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=70.81 E-value=6.4 Score=34.95 Aligned_cols=35 Identities=34% Similarity=0.432 Sum_probs=28.6
Q ss_pred cCCceEEEEEEecCCCCCCCeEEEEEcCEEEEEEe
Q 022287 175 NGGQIHDLVIECDTHGMNDPCLMVRVDGKSVMKVK 209 (299)
Q Consensus 175 e~G~~HeI~Iec~~~g~~dp~l~V~VDgk~v~~Vk 209 (299)
+.|+.|+|+|+..-+...++.+.|.+|||.|+..+
T Consensus 150 ~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~ 184 (224)
T PF14099_consen 150 ERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYK 184 (224)
T ss_dssp -TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEE
T ss_pred CCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEe
Confidence 46999999999876545788999999999988764
No 6
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=69.32 E-value=13 Score=31.61 Aligned_cols=63 Identities=29% Similarity=0.556 Sum_probs=41.1
Q ss_pred cccEEEEEECceE--EEEecCccHHHhhhccCCCCCCceeEEEeeeeeeceeeeeeeeEEecCC---ceEEEEEEecC
Q 022287 116 EGFYVSVVVDRQM--VLLLGDMRKEAFKKTNATPVPSNAVFVAKREHLFGKKVFFTKAQFCNGG---QIHDLVIECDT 188 (299)
Q Consensus 116 sgfYVavv~d~Ev--vLlLGDl~~ea~~r~~~~~~~~~~~lvsRrEhv~G~~~~~Tka~F~e~G---~~HeI~Iec~~ 188 (299)
.|-+.|||-|.+- ||+||=|.+||++||...- .+...||.-+ ..=+|-. .+| +.+||.++|+.
T Consensus 16 ~gLvpaIvQd~~t~eVLMlaymN~eAl~kTleTg---~~~y~SRSR~-----~lW~KGe--tSG~~q~v~~i~~DCD~ 83 (111)
T COG0139 16 DGLVPAIVQDAETGEVLMLAYMNEEALAKTLETG---EAHYYSRSRQ-----ELWTKGE--TSGHTQKVVEIRLDCDG 83 (111)
T ss_pred CCeEEEEEEecCCCcEEEEEecCHHHHHHHHhcC---eEEEEEcchh-----hhecccc--ccCceEEEEEEEcCCCC
Confidence 7889999987654 7999999999999985432 3555555321 1111111 122 56899999986
No 7
>PRK00051 hisI phosphoribosyl-AMP cyclohydrolase; Reviewed
Probab=67.35 E-value=21 Score=30.94 Aligned_cols=59 Identities=25% Similarity=0.500 Sum_probs=40.2
Q ss_pred cccEEEEEEC--ceEEEEecCccHHHhhhccCCCCCCceeEEEeeeeeeceeeeeeeeEEecCC-------ceEEEEEEe
Q 022287 116 EGFYVSVVVD--RQMVLLLGDMRKEAFKKTNATPVPSNAVFVAKREHLFGKKVFFTKAQFCNGG-------QIHDLVIEC 186 (299)
Q Consensus 116 sgfYVavv~d--~EvvLlLGDl~~ea~~r~~~~~~~~~~~lvsRrEhv~G~~~~~Tka~F~e~G-------~~HeI~Iec 186 (299)
.|-.-|||-| ..-||+||=|.+||.++|.... .+...||. |-+.--+| +..+|.++|
T Consensus 12 ~GLipaivqd~~tg~VLMlaymn~eAl~~Tl~tg---~~~y~SRS-----------R~~lW~KGetSG~~q~v~~i~~DC 77 (125)
T PRK00051 12 DGLVPAIAQDAETGEVLMVAWMNEEALAKTLETG---RAHYWSRS-----------RQKLWRKGETSGHVQKVHEVRLDC 77 (125)
T ss_pred CCcEEEEEEECCCCCEEEEEEcCHHHHHHHHhcC---cEEEEeCc-----------cCcccCCCCCcCCeEEEEEEEecC
Confidence 4778888887 5678999999999999985432 34555552 11222334 556899999
Q ss_pred cC
Q 022287 187 DT 188 (299)
Q Consensus 187 ~~ 188 (299)
++
T Consensus 78 D~ 79 (125)
T PRK00051 78 DG 79 (125)
T ss_pred CC
Confidence 86
No 8
>smart00282 LamG Laminin G domain.
Probab=66.91 E-value=62 Score=25.96 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=24.5
Q ss_pred eEEecCCceEEEEEEecCCCCCCCeEEEEEcCEEEEEE
Q 022287 171 AQFCNGGQIHDLVIECDTHGMNDPCLMVRVDGKSVMKV 208 (299)
Q Consensus 171 a~F~e~G~~HeI~Iec~~~g~~dp~l~V~VDgk~v~~V 208 (299)
.++ ..|+.|.|.|+... ..+.+.|||+....+
T Consensus 57 ~~~-~dg~WH~v~i~~~~-----~~~~l~VD~~~~~~~ 88 (135)
T smart00282 57 TPL-NDGQWHRVAVERNG-----RRVTLSVDGENPVSG 88 (135)
T ss_pred eEe-CCCCEEEEEEEEeC-----CEEEEEECCCccccE
Confidence 444 47899999999874 578999999765544
No 9
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=56.45 E-value=28 Score=29.39 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=29.3
Q ss_pred cCCceEEEEEEecCCCCCCCeEEEEEcCEEEEEEeeeccc
Q 022287 175 NGGQIHDLVIECDTHGMNDPCLMVRVDGKSVMKVKHLRWK 214 (299)
Q Consensus 175 e~G~~HeI~Iec~~~g~~dp~l~V~VDgk~v~~VkrL~Wk 214 (299)
..|+.|.|.|+|.+ +.+.|.|||+.|+......=.
T Consensus 125 ~~~~W~~~~I~~~g-----~~i~v~vnG~~v~~~~d~~~~ 159 (185)
T PF06439_consen 125 PPGEWNTVRIVVKG-----NRITVWVNGKPVADFTDPSFP 159 (185)
T ss_dssp -TTSEEEEEEEEET-----TEEEEEETTEEEEEEETTSHH
T ss_pred CCCceEEEEEEEEC-----CEEEEEECCEEEEEEEcCCCC
Confidence 57999999999985 679999999999998766543
No 10
>PF06905 FAIM1: Fas apoptotic inhibitory molecule (FAIM1); InterPro: IPR010695 This family consists of several fas apoptotic inhibitory molecule (FAIM) proteins. FAIM expression is upregulated in B cells by anti-Ig treatment that induces Fas-resistance, and overexpression of FAIM diminishes sensitivity to Fas-mediated apoptosis of B and non-B cell lines. FAIM is highly evolutionarily conserved and is widely expressed in murine tissues, suggesting that FAIM plays an important role in cellular physiology [].; GO: 0043066 negative regulation of apoptosis; PDB: 3MX7_A 2KW1_A 2KD2_A.
Probab=44.67 E-value=1.4e+02 Score=27.24 Aligned_cols=43 Identities=26% Similarity=0.621 Sum_probs=28.5
Q ss_pred CCceEEEEEEecCCCCCCCeEEEEEcCEEEEEEeeeccccc--ceeEEEEC
Q 022287 176 GGQIHDLVIECDTHGMNDPCLMVRVDGKSVMKVKHLRWKFR--GNHTILVD 224 (299)
Q Consensus 176 ~G~~HeI~Iec~~~g~~dp~l~V~VDgk~v~~VkrL~WkFR--GNeti~vd 224 (299)
+...|.|.+|=++- -...-|+||||.+++ | .|.|+ |-++-.|+
T Consensus 14 ~d~~h~IefeHgtt---tGkrvI~VDGkei~r-~--~wmfklvg~e~F~ig 58 (177)
T PF06905_consen 14 SDGVHKIEFEHGTT---TGKRVIKVDGKEIVR-R--DWMFKLVGKETFTIG 58 (177)
T ss_dssp TTEEEEEEEEE-TT---T--EEEEETTEEEEE-E-----S---EEEEEEET
T ss_pred CCCEEEEEEEeCCc---cCeEEEEECCcEEEE-e--cceeeeCcccEEEEC
Confidence 68899999997642 356899999998776 3 47766 77777777
No 11
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=41.31 E-value=2e+02 Score=23.54 Aligned_cols=49 Identities=22% Similarity=0.322 Sum_probs=33.7
Q ss_pred ecCCceEEEEEEecCCCCCCCeEEEEEcCEEEEEEeee-cc--cccceeEEEECCeE
Q 022287 174 CNGGQIHDLVIECDTHGMNDPCLMVRVDGKSVMKVKHL-RW--KFRGNHTILVDGLP 227 (299)
Q Consensus 174 ~e~G~~HeI~Iec~~~g~~dp~l~V~VDgk~v~~VkrL-~W--kFRGNeti~vdg~~ 227 (299)
...|+.|.|.++-.. ....++||+..++...-- .= ...-+..|+|.|+|
T Consensus 50 i~dg~wh~v~~~r~~-----~~~~L~Vd~~~~~~~~s~~~~~~~l~~~~~lyvGG~p 101 (131)
T PF00054_consen 50 INDGKWHTVSVSRNG-----RNGSLSVDGEEVVTGESPSGATQSLDVDGPLYVGGLP 101 (131)
T ss_dssp TTSSSEEEEEEEEET-----TEEEEEETTSEEEEEEECSSSSSSCEECSEEEESSSS
T ss_pred cCCCcceEEEEEEcC-----cEEEEEECCccceeeecCCccccccccccCEEEccCC
Confidence 368999999998764 579999999998444322 11 12333448888887
No 12
>PRK02759 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; Reviewed
Probab=38.62 E-value=95 Score=28.90 Aligned_cols=58 Identities=31% Similarity=0.582 Sum_probs=39.0
Q ss_pred ccEEEEEEC--ceEEEEecCccHHHhhhccCCCCCCceeEEEeeeeeeceeeeeeeeEEecCC-------ceEEEEEEec
Q 022287 117 GFYVSVVVD--RQMVLLLGDMRKEAFKKTNATPVPSNAVFVAKREHLFGKKVFFTKAQFCNGG-------QIHDLVIECD 187 (299)
Q Consensus 117 gfYVavv~d--~EvvLlLGDl~~ea~~r~~~~~~~~~~~lvsRrEhv~G~~~~~Tka~F~e~G-------~~HeI~Iec~ 187 (299)
|-.-|||-| .--||+||=|.+||+++|.... .+...||. |-+.--+| +..+|.++|+
T Consensus 15 gLip~ivqd~~tg~vLml~ymn~eal~~Tl~tg---~~~~~SRS-----------r~~lW~KGetSG~~q~v~~i~~DCD 80 (203)
T PRK02759 15 GLIPAIVQDALTGEVLMLGYMNREALEKTLETG---EVTFFSRS-----------KQRLWTKGETSGNTQKVVSIRLDCD 80 (203)
T ss_pred CcEEEEEEECCCCCEEEEEecCHHHHHHHHhcC---cEEEEeCC-----------CCcccCCCCCCCCeEEEEEEEecCC
Confidence 667778876 4468999999999999986432 35555552 12222233 5678999998
Q ss_pred C
Q 022287 188 T 188 (299)
Q Consensus 188 ~ 188 (299)
+
T Consensus 81 ~ 81 (203)
T PRK02759 81 N 81 (203)
T ss_pred C
Confidence 6
No 13
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=35.68 E-value=2.1e+02 Score=22.16 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=25.5
Q ss_pred EEEEeeecccccceeEEEEC-CeEEEEEEEe---eeecc
Q 022287 205 VMKVKHLRWKFRGNHTILVD-GLPVEVFWDV---HNWLF 239 (299)
Q Consensus 205 v~~VkrL~WkFRGNeti~vd-g~~V~V~WDV---HdWlF 239 (299)
.++|....=.-.+.+++.|. |..+++.|++ |+|+.
T Consensus 35 ~~~v~~~~y~~~~~~~~~v~ag~~~~~~w~l~~s~gwYD 73 (89)
T PF05506_consen 35 TFTVYDNAYGGGGPWTYTVAAGQTVSLTWPLAASGGWYD 73 (89)
T ss_pred EEEEEeCCcCCCCCEEEEECCCCEEEEEEeecCCCCcEE
Confidence 34444433333567888886 8999999999 99987
No 14
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=35.47 E-value=67 Score=27.12 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=41.6
Q ss_pred EECceEEEEecCccHHH-hhhccCCC---------CCCceeEEEeeeeeeceee---eeeeeEEecCCceEEEEE
Q 022287 123 VVDRQMVLLLGDMRKEA-FKKTNATP---------VPSNAVFVAKREHLFGKKV---FFTKAQFCNGGQIHDLVI 184 (299)
Q Consensus 123 v~d~EvvLlLGDl~~ea-~~r~~~~~---------~~~~~~lvsRrEhv~G~~~---~~Tka~F~e~G~~HeI~I 184 (299)
+.++|+.|-.|-..... .+.|..|| ...+..|.--||--+|+|. =.|-.|| |-|.+.+|.+
T Consensus 8 ~~~g~IelN~gr~~~~i~V~NtGDRPIQVGSHfHF~EvN~aL~FDR~~a~G~RLdIpagTAVRF-EPG~~k~V~L 81 (106)
T COG0832 8 LASGDIELNAGRPTVTIEVANTGDRPIQVGSHFHFFEVNRALSFDREKAYGMRLDIPAGTAVRF-EPGDEKEVEL 81 (106)
T ss_pred ecCccEEEeCCCcceEEEEeecCCCceEeecceeehhhCcceeechhhhcceEecccCCceEee-CCCCccEEEE
Confidence 44666666666543222 45556665 1246778888899999986 6788899 6899988876
No 15
>PLN02346 histidine biosynthesis bifunctional protein hisIE
Probab=32.56 E-value=1.1e+02 Score=29.84 Aligned_cols=58 Identities=24% Similarity=0.527 Sum_probs=37.4
Q ss_pred ccEEEEEEC--ceEEEEecCccHHHhhhccCCCCCCceeEEEeeeeeeceeeeeeeeEEecCC-------ceEEEEEEec
Q 022287 117 GFYVSVVVD--RQMVLLLGDMRKEAFKKTNATPVPSNAVFVAKREHLFGKKVFFTKAQFCNGG-------QIHDLVIECD 187 (299)
Q Consensus 117 gfYVavv~d--~EvvLlLGDl~~ea~~r~~~~~~~~~~~lvsRrEhv~G~~~~~Tka~F~e~G-------~~HeI~Iec~ 187 (299)
|---|||.| ..-||+||=|.+||+.+|.... .+...||.= -+.--+| +.++|.++|+
T Consensus 53 gLipaivQd~~tg~VLml~ymn~eal~~Tl~tg---~~~y~SRSR-----------~~LW~KGetSG~~q~v~~i~~DCD 118 (271)
T PLN02346 53 GLAVAIAQNVDTGAILMQGFANREAISATISSR---KATFYSRSR-----------SGLWTKGETSGNFINVHDIYLDCD 118 (271)
T ss_pred CCEEEEEEECCCCCEEEEEecCHHHHHHHHhcC---cEEEEeCCC-----------CccccCCCCcCCeEEEEEEEecCC
Confidence 555555554 5678999999999999985432 344455431 1122234 5679999998
Q ss_pred C
Q 022287 188 T 188 (299)
Q Consensus 188 ~ 188 (299)
+
T Consensus 119 ~ 119 (271)
T PLN02346 119 R 119 (271)
T ss_pred C
Confidence 6
No 16
>KOG2463 consensus Predicted RNA-binding protein Nob1p involved in 26S proteasome assembly [Posttranslational modification, protein turnover, chaperones]
Probab=28.44 E-value=71 Score=32.14 Aligned_cols=24 Identities=29% Similarity=0.525 Sum_probs=19.7
Q ss_pred EEEEcCEEEEEEe-eecccccceeE
Q 022287 197 MVRVDGKSVMKVK-HLRWKFRGNHT 220 (299)
Q Consensus 197 ~V~VDgk~v~~Vk-rL~WkFRGNet 220 (299)
.|.=||..-+|.| |.+||=||+|-
T Consensus 274 sv~~dG~~~~h~k~r~~~n~RG~~Y 298 (376)
T KOG2463|consen 274 SVDEDGNGQTHFKKRFQWNNRGLQY 298 (376)
T ss_pred EecCCCceeEEeecccccccCccee
Confidence 3444677899998 99999999996
No 17
>TIGR00481 Raf kinase inhibitor-like protein, YbhB/YbcL family.
Probab=27.24 E-value=3.2e+02 Score=23.42 Aligned_cols=88 Identities=18% Similarity=0.317 Sum_probs=49.1
Q ss_pred CccEEEEEEeeCCcCC-CceEEEEcCCCccceecccccccceeeecCc-eeeEe----------cceeeEEEecCCCccc
Q 022287 41 GRSCLITITWSKNLMG-QGLSVGIDDASNQCLCKVDIKPWLFSKRKGS-KSLEA----------YSCIIDIYWDLSSAKF 108 (299)
Q Consensus 41 g~~~litvTWsk~~~g-~~Lsv~v~~~~~~~~~k~~~kp~~fwkkkGs-K~~~~----------~~~~v~v~WDls~Akf 108 (299)
|.-+.-.|.|+.-+-| ++|.|.+.|+.....+ ..-=|+.|.-..+ ..+.- .+..+.---|+-.+.|
T Consensus 11 G~n~SP~l~w~~~P~~t~s~al~~~D~Dap~~~--~~~HWv~~nIp~~~~~l~e~~~~~~~~~~~g~~~~g~n~~g~~~Y 88 (141)
T TIGR00481 11 GPNISPPLSWDGVPEGAKSLALTCIDPDAPTGC--GWWHWVVVNIPADTTVLPENASSDDKRLPQGVPLQGRNDFGKSGY 88 (141)
T ss_pred CCCCCcEEEEcCCCCCceEEEEEEECCCCCCCC--CeEEEEEecCCCCcccccCCccccccccCCcceeEeeccCCCccE
Confidence 3444577889988766 7999999987542211 0112555655543 22211 1213444566666666
Q ss_pred CCCCccccc---cEEEEEE-Cce-EEEE
Q 022287 109 GSGPEPLEG---FYVSVVV-DRQ-MVLL 131 (299)
Q Consensus 109 ~~~PEP~sg---fYVavv~-d~E-vvLl 131 (299)
.||-|-.| |+.-|.. |.+ +-|-
T Consensus 89 -~GP~PP~g~HrY~f~vyALd~~~l~l~ 115 (141)
T TIGR00481 89 -IGPCPPKGDHRYLFTVYALDTEKLDLD 115 (141)
T ss_pred -eCCCCcCCCEEEEEEEEEecCCCCCCC
Confidence 36777665 6555544 555 5554
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=27.12 E-value=53 Score=34.35 Aligned_cols=44 Identities=20% Similarity=0.414 Sum_probs=31.6
Q ss_pred CCCeEEE-EEcCEEEE-------EEeeecccccceeEEEECCeEEEEEEEee
Q 022287 192 NDPCLMV-RVDGKSVM-------KVKHLRWKFRGNHTILVDGLPVEVFWDVH 235 (299)
Q Consensus 192 ~dp~l~V-~VDgk~v~-------~VkrL~WkFRGNeti~vdg~~V~V~WDVH 235 (299)
.++++.| ..||..+. =|=+|+||=+||..+--+-..+-|+||+|
T Consensus 255 ~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~ 306 (524)
T KOG0273|consen 255 EDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAH 306 (524)
T ss_pred cCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEecc
Confidence 3455443 45665443 25689999999999887777788899995
No 19
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=26.74 E-value=1.1e+02 Score=26.86 Aligned_cols=44 Identities=23% Similarity=0.264 Sum_probs=30.3
Q ss_pred cCCceEEEEEEecCCCCCCCeEEEEEcCEEEEEEeeecccccceeEEEECCe
Q 022287 175 NGGQIHDLVIECDTHGMNDPCLMVRVDGKSVMKVKHLRWKFRGNHTILVDGL 226 (299)
Q Consensus 175 e~G~~HeI~Iec~~~g~~dp~l~V~VDgk~v~~VkrL~WkFRGNeti~vdg~ 226 (299)
..|+.|-|.|...+ ..+.+.||++.+-.+. |...+. +.+..+|.
T Consensus 115 ~dg~WH~lal~V~~-----~~v~LyvDC~~~~~~~-l~~~~~--~~~~~~g~ 158 (184)
T smart00210 115 ADGQWHKLALSVSG-----SSATLYVDCNEIDSRP-LDRPGQ--PPIDTDGI 158 (184)
T ss_pred ccCCceEEEEEEeC-----CEEEEEECCcccccee-cCCccc--ccccccce
Confidence 36999999998875 3688999999876653 665554 33444443
No 20
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=25.49 E-value=69 Score=26.32 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=14.8
Q ss_pred CCeEEEEEcCEEEEEEe
Q 022287 193 DPCLMVRVDGKSVMKVK 209 (299)
Q Consensus 193 dp~l~V~VDgk~v~~Vk 209 (299)
|..+||-||||.|+-+=
T Consensus 27 DDDvWVFIn~kLv~DlG 43 (90)
T TIGR02148 27 DDDVWVFINNKLVVDIG 43 (90)
T ss_pred CCeEEEEECCEEEEEcc
Confidence 67899999999998763
No 21
>PRK13202 ureB urease subunit beta; Reviewed
Probab=24.90 E-value=81 Score=26.63 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=38.8
Q ss_pred ECceEEEEecC--ccHHHhhhccCCC---------CCCceeEEEeeeeeeceee---eeeeeEEecCCceEEEEE
Q 022287 124 VDRQMVLLLGD--MRKEAFKKTNATP---------VPSNAVFVAKREHLFGKKV---FFTKAQFCNGGQIHDLVI 184 (299)
Q Consensus 124 ~d~EvvLlLGD--l~~ea~~r~~~~~---------~~~~~~lvsRrEhv~G~~~---~~Tka~F~e~G~~HeI~I 184 (299)
.++++.|..|- ...-....+..|| ...+..|.--||.-+|.+. =.|-.|| |-|.+++|.+
T Consensus 9 ~~~~I~ln~grr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~L 82 (104)
T PRK13202 9 GSGDIEMNAAALSRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRF-EPGIPQIVGL 82 (104)
T ss_pred CCCCEEeCCCCCceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEE-CCCCeEEEEE
Confidence 45666666662 1111133344454 1246778888999999886 6788999 6788888865
No 22
>PF12101 DUF3577: Protein of unknown function (DUF3577); InterPro: IPR021960 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.
Probab=22.73 E-value=1.7e+02 Score=25.82 Aligned_cols=13 Identities=38% Similarity=0.590 Sum_probs=10.2
Q ss_pred EEEEEcCEEEEEE
Q 022287 196 LMVRVDGKSVMKV 208 (299)
Q Consensus 196 l~V~VDgk~v~~V 208 (299)
-||+|||+.|.+-
T Consensus 117 ~~iKVdge~Vy~~ 129 (137)
T PF12101_consen 117 KWIKVDGELVYKA 129 (137)
T ss_pred EEEEECCEEEecC
Confidence 4789999988764
No 23
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=22.36 E-value=4.1e+02 Score=21.26 Aligned_cols=14 Identities=21% Similarity=0.142 Sum_probs=10.6
Q ss_pred cCCceEEEEEEecC
Q 022287 175 NGGQIHDLVIECDT 188 (299)
Q Consensus 175 e~G~~HeI~Iec~~ 188 (299)
..|+.|+|.||+..
T Consensus 107 ~~g~~y~i~i~y~~ 120 (145)
T PF07691_consen 107 EAGGKYPIRIEYFN 120 (145)
T ss_dssp -TT-EEEEEEEEEE
T ss_pred eCCeeEEEEEEEEE
Confidence 58999999999764
No 24
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=20.63 E-value=1.1e+02 Score=31.88 Aligned_cols=41 Identities=34% Similarity=0.613 Sum_probs=27.8
Q ss_pred eEEEecCCC----cccCCCCccc-------cccEEEEEECceEEEEecCccHH
Q 022287 97 IDIYWDLSS----AKFGSGPEPL-------EGFYVSVVVDRQMVLLLGDMRKE 138 (299)
Q Consensus 97 v~v~WDls~----Akf~~~PEP~-------sgfYVavv~d~EvvLlLGDl~~e 138 (299)
+-=+|||++ |||.+-.-|+ .|||+|+-+|.-- ..|=||.|.
T Consensus 370 ~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRKl 421 (506)
T KOG0289|consen 370 VVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRKL 421 (506)
T ss_pred eEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehhh
Confidence 344799985 8897544443 6999999995542 334588664
Done!