Query 022288
Match_columns 299
No_of_seqs 160 out of 464
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 02:22:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022288.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022288hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.3 2.4E-12 5.2E-17 91.4 5.7 55 17-71 3-59 (60)
2 PF00010 HLH: Helix-loop-helix 99.3 3.2E-12 6.9E-17 91.2 5.3 51 18-68 1-55 (55)
3 smart00353 HLH helix loop heli 99.3 6.6E-12 1.4E-16 88.0 5.9 49 24-72 2-52 (53)
4 KOG1318 Helix loop helix trans 99.2 6.5E-11 1.4E-15 116.4 8.4 82 17-99 232-320 (411)
5 KOG1319 bHLHZip transcription 98.5 2.4E-07 5.2E-12 84.6 8.0 78 18-96 62-146 (229)
6 KOG2483 Upstream transcription 98.4 2.4E-06 5.2E-11 79.1 9.6 87 10-96 51-139 (232)
7 KOG4304 Transcriptional repres 98.2 9.6E-07 2.1E-11 82.1 3.8 58 14-72 28-93 (250)
8 KOG3561 Aryl-hydrocarbon recep 97.9 1.1E-05 2.4E-10 85.4 5.6 54 16-70 18-75 (803)
9 KOG3960 Myogenic helix-loop-he 97.4 0.00034 7.4E-09 66.4 7.0 64 11-74 111-175 (284)
10 KOG0561 bHLH transcription fac 97.2 0.0003 6.5E-09 68.4 3.8 62 20-81 62-124 (373)
11 KOG2588 Predicted DNA-binding 97.1 0.00029 6.3E-09 75.8 3.0 66 17-82 275-340 (953)
12 PRK15422 septal ring assembly 97.1 0.006 1.3E-07 49.0 9.2 60 57-120 13-72 (79)
13 COG3074 Uncharacterized protei 97.0 0.0074 1.6E-07 48.1 9.1 60 57-120 13-72 (79)
14 PF06005 DUF904: Protein of un 96.8 0.013 2.7E-07 45.8 8.8 51 61-111 3-53 (72)
15 TIGR02894 DNA_bind_RsfA transc 96.6 0.014 3.1E-07 52.1 9.2 64 57-120 82-148 (161)
16 KOG4029 Transcription factor H 96.5 0.0033 7.2E-08 56.8 4.3 59 17-75 108-169 (228)
17 PRK11637 AmiB activator; Provi 96.4 0.03 6.4E-07 54.7 10.6 73 55-127 68-140 (428)
18 PF06005 DUF904: Protein of un 96.2 0.057 1.2E-06 42.2 9.3 50 57-106 13-62 (72)
19 PLN03217 transcription factor 96.2 0.011 2.3E-07 48.6 5.4 58 27-84 16-78 (93)
20 PRK00846 hypothetical protein; 96.2 0.054 1.2E-06 43.1 9.1 68 66-137 10-77 (77)
21 KOG4005 Transcription factor X 96.2 0.065 1.4E-06 51.2 11.1 89 24-119 66-154 (292)
22 PRK04406 hypothetical protein; 96.0 0.097 2.1E-06 41.1 9.5 68 66-137 8-75 (75)
23 PRK02119 hypothetical protein; 95.9 0.078 1.7E-06 41.3 8.7 70 64-137 4-73 (73)
24 PRK02793 phi X174 lysis protei 95.4 0.19 4.1E-06 39.0 9.2 68 66-137 5-72 (72)
25 TIGR03752 conj_TIGR03752 integ 95.3 0.1 2.2E-06 53.3 9.5 59 57-115 61-134 (472)
26 COG3883 Uncharacterized protei 95.3 0.11 2.3E-06 49.7 9.2 72 53-124 36-114 (265)
27 PRK15422 septal ring assembly 95.1 0.14 3.1E-06 41.2 7.9 55 61-115 3-57 (79)
28 PF06156 DUF972: Protein of un 95.1 0.12 2.7E-06 43.0 7.8 46 66-111 5-50 (107)
29 PF00170 bZIP_1: bZIP transcri 95.1 0.085 1.8E-06 39.1 6.1 37 62-98 26-62 (64)
30 smart00338 BRLZ basic region l 95.0 0.079 1.7E-06 39.2 5.9 39 61-99 25-63 (65)
31 PF04102 SlyX: SlyX; InterPro 95.0 0.12 2.7E-06 39.4 6.9 50 67-120 2-51 (69)
32 PRK00736 hypothetical protein; 95.0 0.25 5.5E-06 37.9 8.6 65 68-137 4-68 (68)
33 PRK00295 hypothetical protein; 94.9 0.3 6.4E-06 37.6 8.8 65 67-137 3-68 (68)
34 PRK04325 hypothetical protein; 94.6 0.43 9.4E-06 37.2 9.2 70 64-137 4-74 (74)
35 PRK10884 SH3 domain-containing 94.6 0.21 4.5E-06 45.7 8.6 78 28-114 93-170 (206)
36 KOG3910 Helix loop helix trans 94.5 0.042 9.2E-07 56.8 4.4 51 23-73 531-584 (632)
37 PF08317 Spc7: Spc7 kinetochor 94.5 0.52 1.1E-05 44.9 11.4 82 27-110 183-264 (325)
38 PF12325 TMF_TATA_bd: TATA ele 94.5 0.27 5.9E-06 41.8 8.4 52 59-110 13-64 (120)
39 PF11559 ADIP: Afadin- and alp 94.2 1.4 3E-05 37.3 12.3 79 24-115 48-126 (151)
40 COG3883 Uncharacterized protei 94.1 0.35 7.6E-06 46.2 9.3 58 57-114 33-90 (265)
41 PRK10884 SH3 domain-containing 94.0 0.52 1.1E-05 43.1 10.0 27 87-113 129-155 (206)
42 PRK13169 DNA replication intia 94.0 0.31 6.8E-06 41.0 7.8 46 65-110 4-49 (110)
43 PF07106 TBPIP: Tat binding pr 93.9 0.2 4.4E-06 43.1 6.7 51 64-114 81-133 (169)
44 KOG2264 Exostosin EXT1L [Signa 93.5 0.44 9.4E-06 50.6 9.4 75 56-130 87-161 (907)
45 smart00787 Spc7 Spc7 kinetocho 93.4 0.97 2.1E-05 43.7 11.1 82 27-110 178-259 (312)
46 PF04880 NUDE_C: NUDE protein, 93.4 0.12 2.6E-06 46.2 4.5 46 64-113 2-47 (166)
47 PF02183 HALZ: Homeobox associ 93.1 0.25 5.5E-06 35.5 5.0 41 74-114 3-43 (45)
48 PRK11637 AmiB activator; Provi 93.0 0.73 1.6E-05 45.1 9.8 59 62-120 68-126 (428)
49 KOG3558 Hypoxia-inducible fact 92.8 0.084 1.8E-06 56.2 3.1 50 16-65 44-96 (768)
50 COG4026 Uncharacterized protei 92.7 0.7 1.5E-05 44.2 8.7 56 62-117 135-190 (290)
51 TIGR02449 conserved hypothetic 92.7 0.91 2E-05 35.3 7.8 44 64-107 2-45 (65)
52 PF06156 DUF972: Protein of un 92.6 0.72 1.6E-05 38.5 7.8 50 62-111 8-57 (107)
53 PF10146 zf-C4H2: Zinc finger- 92.6 1.3 2.8E-05 41.4 10.2 34 62-95 32-65 (230)
54 COG3074 Uncharacterized protei 92.4 0.99 2.1E-05 36.2 7.9 55 61-115 3-57 (79)
55 PRK13169 DNA replication intia 92.4 0.92 2E-05 38.2 8.2 49 62-110 8-56 (110)
56 TIGR02449 conserved hypothetic 91.9 1.2 2.6E-05 34.6 7.8 55 62-120 7-61 (65)
57 PF08317 Spc7: Spc7 kinetochor 91.9 1.1 2.4E-05 42.7 9.2 34 80-113 227-260 (325)
58 PF10224 DUF2205: Predicted co 91.8 1.7 3.6E-05 35.0 8.7 46 64-109 18-63 (80)
59 PF00170 bZIP_1: bZIP transcri 91.8 1.3 2.8E-05 32.7 7.6 35 78-112 28-62 (64)
60 PF04111 APG6: Autophagy prote 91.7 0.98 2.1E-05 43.4 8.6 7 117-123 132-138 (314)
61 PRK05771 V-type ATP synthase s 91.7 1.5 3.3E-05 45.3 10.5 41 79-130 96-136 (646)
62 COG3937 Uncharacterized conser 91.6 2.1 4.6E-05 36.4 9.5 75 31-114 24-107 (108)
63 PRK13729 conjugal transfer pil 91.6 5.6 0.00012 41.1 14.3 55 59-113 66-120 (475)
64 PF07888 CALCOCO1: Calcium bin 91.2 13 0.00028 39.1 16.6 44 80-125 421-464 (546)
65 PF08614 ATG16: Autophagy prot 91.2 1.7 3.6E-05 38.6 9.0 54 57-110 111-164 (194)
66 COG5570 Uncharacterized small 91.1 0.66 1.4E-05 35.3 5.4 45 68-112 4-55 (57)
67 PF07798 DUF1640: Protein of u 91.1 2.5 5.4E-05 37.1 9.9 30 90-119 73-102 (177)
68 PF09789 DUF2353: Uncharacteri 91.1 2.5 5.4E-05 41.5 10.8 45 50-94 67-111 (319)
69 PF07989 Microtub_assoc: Micro 91.0 1.9 4.2E-05 33.9 8.2 52 64-115 2-61 (75)
70 PF14197 Cep57_CLD_2: Centroso 90.9 2.2 4.8E-05 33.1 8.3 54 64-117 7-67 (69)
71 PHA02562 46 endonuclease subun 90.8 2.5 5.5E-05 41.8 10.7 76 28-109 330-405 (562)
72 PF10186 Atg14: UV radiation r 90.7 2.9 6.3E-05 37.6 10.2 31 66-96 67-97 (302)
73 PRK10869 recombination and rep 90.5 2.7 5.9E-05 43.2 11.0 92 28-129 296-391 (553)
74 COG2900 SlyX Uncharacterized p 90.5 3.3 7.1E-05 33.1 9.0 69 65-137 4-72 (72)
75 PF13851 GAS: Growth-arrest sp 90.4 2.5 5.5E-05 38.2 9.6 62 55-116 20-81 (201)
76 KOG1962 B-cell receptor-associ 90.3 2.3 5E-05 39.8 9.3 58 57-114 153-210 (216)
77 PF09738 DUF2051: Double stran 90.2 2 4.2E-05 41.7 9.1 89 28-120 81-170 (302)
78 PF04977 DivIC: Septum formati 89.9 1.3 2.8E-05 32.8 6.2 37 74-110 22-58 (80)
79 PF13851 GAS: Growth-arrest sp 89.8 3 6.6E-05 37.8 9.6 76 51-131 83-180 (201)
80 PF14662 CCDC155: Coiled-coil 89.8 2.1 4.6E-05 39.5 8.6 41 76-116 88-128 (193)
81 PF04156 IncA: IncA protein; 89.7 4.9 0.00011 34.8 10.4 48 62-109 123-170 (191)
82 PF05529 Bap31: B-cell recepto 89.6 1.9 4.2E-05 37.8 7.9 30 82-111 160-189 (192)
83 PF05008 V-SNARE: Vesicle tran 89.6 5.3 0.00011 30.1 9.3 73 32-115 7-79 (79)
84 PF11559 ADIP: Afadin- and alp 89.5 6.7 0.00014 33.2 10.9 79 31-110 5-86 (151)
85 COG1340 Uncharacterized archae 89.4 3.7 8E-05 40.0 10.3 70 28-110 27-96 (294)
86 KOG3559 Transcriptional regula 89.3 0.34 7.4E-06 49.6 3.4 47 19-66 3-52 (598)
87 PF02183 HALZ: Homeobox associ 88.9 1.3 2.8E-05 31.9 5.2 34 81-114 3-36 (45)
88 PF10805 DUF2730: Protein of u 88.8 1.9 4.2E-05 35.4 6.9 52 62-113 42-95 (106)
89 PRK13922 rod shape-determining 88.8 1.9 4E-05 39.7 7.6 14 77-90 77-90 (276)
90 PF06637 PV-1: PV-1 protein (P 88.7 4.1 8.9E-05 41.4 10.3 29 91-119 350-378 (442)
91 COG4942 Membrane-bound metallo 88.6 5.7 0.00012 40.5 11.4 57 57-113 54-110 (420)
92 PF10473 CENP-F_leu_zip: Leuci 88.4 4 8.7E-05 35.7 9.0 44 73-116 49-92 (140)
93 PF15035 Rootletin: Ciliary ro 88.4 3.9 8.4E-05 36.9 9.1 61 56-116 61-121 (182)
94 PF08614 ATG16: Autophagy prot 88.2 6.2 0.00013 35.0 10.3 66 52-117 113-178 (194)
95 PRK09039 hypothetical protein; 88.2 3.9 8.4E-05 39.8 9.7 55 55-109 130-184 (343)
96 PF04728 LPP: Lipoprotein leuc 88.1 3.5 7.5E-05 31.4 7.3 40 71-110 5-44 (56)
97 PF07106 TBPIP: Tat binding pr 87.9 1.9 4.2E-05 37.1 6.7 60 61-120 71-135 (169)
98 PF07798 DUF1640: Protein of u 87.9 5.3 0.00011 35.1 9.5 27 90-116 113-139 (177)
99 PF02403 Seryl_tRNA_N: Seryl-t 87.9 3.3 7.3E-05 33.0 7.6 56 65-120 39-104 (108)
100 PF12325 TMF_TATA_bd: TATA ele 87.9 6.3 0.00014 33.6 9.6 46 54-99 15-60 (120)
101 PF08172 CASP_C: CASP C termin 87.9 2.8 6.1E-05 39.4 8.2 55 62-120 79-133 (248)
102 PF01920 Prefoldin_2: Prefoldi 87.9 1.8 3.9E-05 33.6 5.9 67 32-99 30-99 (106)
103 PF14662 CCDC155: Coiled-coil 87.8 2.2 4.7E-05 39.4 7.2 49 66-114 5-53 (193)
104 PF04728 LPP: Lipoprotein leuc 87.7 4.1 8.8E-05 31.0 7.4 48 63-110 4-51 (56)
105 COG4467 Regulator of replicati 87.7 2.7 5.8E-05 36.1 7.2 51 65-119 4-54 (114)
106 KOG0250 DNA repair protein RAD 87.6 5 0.00011 45.0 11.0 87 26-117 370-456 (1074)
107 PRK13729 conjugal transfer pil 87.6 4.1 8.9E-05 42.0 9.8 51 57-107 71-121 (475)
108 smart00787 Spc7 Spc7 kinetocho 87.4 4.2 9E-05 39.4 9.3 50 65-114 207-256 (312)
109 PRK00888 ftsB cell division pr 87.2 1.8 3.8E-05 35.7 5.8 33 64-96 29-61 (105)
110 smart00338 BRLZ basic region l 87.2 4 8.6E-05 30.2 7.1 34 79-112 29-62 (65)
111 PF14282 FlxA: FlxA-like prote 87.2 4 8.6E-05 33.5 7.8 57 61-117 18-78 (106)
112 PF00038 Filament: Intermediat 87.1 6.5 0.00014 36.4 10.0 62 57-118 211-283 (312)
113 PF14197 Cep57_CLD_2: Centroso 86.9 4.7 0.0001 31.3 7.6 51 60-110 17-67 (69)
114 PF12329 TMF_DNA_bd: TATA elem 86.8 5.8 0.00013 30.9 8.1 55 60-114 10-64 (74)
115 TIGR02894 DNA_bind_RsfA transc 86.7 2.8 6E-05 37.8 7.1 51 60-110 95-145 (161)
116 PF05667 DUF812: Protein of un 86.7 5.8 0.00012 41.7 10.5 63 57-119 323-385 (594)
117 PF05565 Sipho_Gp157: Siphovir 86.7 14 0.00031 32.2 11.4 86 32-120 5-91 (162)
118 PF02403 Seryl_tRNA_N: Seryl-t 86.6 4.9 0.00011 32.1 7.9 58 58-115 25-92 (108)
119 COG2919 Septum formation initi 86.5 9.7 0.00021 31.7 9.8 68 24-98 18-86 (117)
120 PF10805 DUF2730: Protein of u 86.4 5.8 0.00013 32.6 8.4 51 64-114 37-89 (106)
121 PF07200 Mod_r: Modifier of ru 86.1 4.8 0.0001 33.8 8.0 57 59-115 31-87 (150)
122 PF04977 DivIC: Septum formati 86.0 3.2 6.9E-05 30.7 6.1 32 64-95 19-50 (80)
123 KOG4571 Activating transcripti 85.9 6.4 0.00014 38.5 9.6 66 23-116 223-288 (294)
124 PHA03011 hypothetical protein; 85.8 6 0.00013 33.9 8.3 78 34-113 38-115 (120)
125 COG1579 Zn-ribbon protein, pos 85.8 5.7 0.00012 37.6 9.0 38 65-102 92-129 (239)
126 PF10186 Atg14: UV radiation r 85.7 10 0.00022 34.1 10.3 22 96-117 125-146 (302)
127 PF05266 DUF724: Protein of un 85.7 5.5 0.00012 36.1 8.6 37 60-96 108-144 (190)
128 PRK00888 ftsB cell division pr 85.6 3.2 7E-05 34.2 6.5 51 70-124 28-78 (105)
129 PRK02195 V-type ATP synthase s 85.5 6 0.00013 35.9 8.8 57 64-120 12-68 (201)
130 PF06632 XRCC4: DNA double-str 85.5 7 0.00015 38.5 9.9 51 56-106 131-181 (342)
131 PF04156 IncA: IncA protein; 85.4 8.4 0.00018 33.3 9.3 35 76-110 130-164 (191)
132 PHA02047 phage lambda Rz1-like 85.3 5.5 0.00012 33.6 7.7 51 61-125 33-83 (101)
133 PF07716 bZIP_2: Basic region 85.3 2.2 4.9E-05 30.8 4.9 28 83-110 25-52 (54)
134 COG2433 Uncharacterized conser 85.2 4.7 0.0001 43.0 8.9 46 57-102 417-462 (652)
135 PTZ00454 26S protease regulato 85.1 2.3 5.1E-05 42.0 6.5 56 55-110 8-63 (398)
136 PF07926 TPR_MLP1_2: TPR/MLP1/ 85.1 11 0.00023 31.8 9.5 53 58-110 55-111 (132)
137 PF14282 FlxA: FlxA-like prote 85.0 3.5 7.6E-05 33.9 6.5 50 68-117 18-71 (106)
138 KOG2391 Vacuolar sorting prote 84.9 5 0.00011 40.2 8.6 38 70-107 226-263 (365)
139 COG1340 Uncharacterized archae 84.9 5.5 0.00012 38.9 8.7 54 63-116 35-88 (294)
140 TIGR00219 mreC rod shape-deter 84.9 3.1 6.7E-05 39.4 6.9 31 74-104 71-105 (283)
141 PF13870 DUF4201: Domain of un 84.8 13 0.00029 32.2 10.3 62 57-119 72-133 (177)
142 PF11932 DUF3450: Protein of u 84.7 10 0.00022 34.8 10.0 58 67-124 68-125 (251)
143 TIGR03752 conj_TIGR03752 integ 84.7 3.8 8.3E-05 42.2 7.9 49 65-113 76-139 (472)
144 PRK09039 hypothetical protein; 84.6 7.5 0.00016 37.8 9.6 58 62-119 130-187 (343)
145 PF06103 DUF948: Bacterial pro 84.3 13 0.00029 28.9 9.1 48 61-108 18-65 (90)
146 PF12718 Tropomyosin_1: Tropom 84.3 5.3 0.00011 34.5 7.5 40 59-98 11-50 (143)
147 cd00632 Prefoldin_beta Prefold 84.2 10 0.00022 30.6 8.7 62 34-96 33-97 (105)
148 KOG3898 Transcription factor N 83.9 0.92 2E-05 42.6 2.9 56 14-69 68-125 (254)
149 TIGR00634 recN DNA repair prot 83.9 12 0.00025 38.3 10.9 88 27-120 300-391 (563)
150 TIGR00606 rad50 rad50. This fa 83.8 5 0.00011 45.0 8.9 88 27-117 849-936 (1311)
151 KOG0977 Nuclear envelope prote 83.6 5.2 0.00011 41.9 8.4 55 63-117 163-224 (546)
152 PF05266 DUF724: Protein of un 83.6 11 0.00023 34.3 9.5 47 66-112 128-174 (190)
153 TIGR02231 conserved hypothetic 83.5 11 0.00023 38.0 10.4 63 52-114 92-169 (525)
154 PF06785 UPF0242: Uncharacteri 83.5 6 0.00013 39.8 8.4 54 55-108 120-173 (401)
155 PF12808 Mto2_bdg: Micro-tubul 83.4 3.7 7.9E-05 30.8 5.4 45 66-110 5-49 (52)
156 PF00038 Filament: Intermediat 83.4 12 0.00027 34.5 10.0 32 80-111 213-244 (312)
157 PF10211 Ax_dynein_light: Axon 83.4 14 0.00031 33.1 10.1 27 65-91 123-149 (189)
158 PRK10803 tol-pal system protei 83.2 5.2 0.00011 37.4 7.5 26 82-107 60-85 (263)
159 PF12709 Kinetocho_Slk19: Cent 83.0 13 0.00028 30.6 8.8 50 69-118 34-84 (87)
160 KOG1853 LIS1-interacting prote 82.9 15 0.00033 36.0 10.7 39 91-129 158-197 (333)
161 PRK11415 hypothetical protein; 82.5 4.8 0.0001 31.4 6.0 63 58-120 6-69 (74)
162 KOG0946 ER-Golgi vesicle-tethe 82.4 6.3 0.00014 43.4 8.7 59 56-114 658-716 (970)
163 KOG4005 Transcription factor X 82.2 5.8 0.00013 38.3 7.5 51 63-113 91-141 (292)
164 KOG3650 Predicted coiled-coil 82.1 4.8 0.0001 34.4 6.2 51 59-109 53-103 (120)
165 PF08826 DMPK_coil: DMPK coile 81.9 18 0.00039 27.8 8.7 54 57-110 6-59 (61)
166 PF07334 IFP_35_N: Interferon- 81.9 2.4 5.1E-05 34.0 4.1 28 92-119 2-29 (76)
167 PF08172 CASP_C: CASP C termin 81.8 5.7 0.00012 37.4 7.3 60 51-110 75-134 (248)
168 TIGR00219 mreC rod shape-deter 81.7 8.9 0.00019 36.4 8.6 24 78-101 68-91 (283)
169 PF04012 PspA_IM30: PspA/IM30 81.7 22 0.00047 31.7 10.6 61 51-111 80-140 (221)
170 PF03962 Mnd1: Mnd1 family; I 81.7 3 6.5E-05 37.5 5.2 54 61-114 68-127 (188)
171 PF15458 NTR2: Nineteen comple 81.6 13 0.00029 34.8 9.6 16 24-39 145-160 (254)
172 KOG2264 Exostosin EXT1L [Signa 81.4 9 0.0002 41.2 9.2 64 56-119 80-143 (907)
173 PF14257 DUF4349: Domain of un 81.4 14 0.0003 33.9 9.5 80 31-110 105-189 (262)
174 KOG2391 Vacuolar sorting prote 81.2 8.1 0.00018 38.7 8.3 61 52-114 203-263 (365)
175 KOG0995 Centromere-associated 81.1 7.1 0.00015 41.2 8.3 19 91-109 340-358 (581)
176 PRK03918 chromosome segregatio 81.1 20 0.00043 37.7 11.6 14 84-97 681-694 (880)
177 PF05377 FlaC_arch: Flagella a 81.0 9.3 0.0002 29.0 6.8 22 92-113 16-37 (55)
178 PF06103 DUF948: Bacterial pro 81.0 21 0.00045 27.8 9.1 51 58-108 22-72 (90)
179 PRK14011 prefoldin subunit alp 80.9 10 0.00022 33.1 8.1 39 57-98 86-124 (144)
180 PF07200 Mod_r: Modifier of ru 80.9 15 0.00032 30.9 8.8 57 63-119 28-84 (150)
181 PF05103 DivIVA: DivIVA protei 80.9 1.2 2.6E-05 36.1 2.2 50 58-107 21-70 (131)
182 COG2433 Uncharacterized conser 80.8 6.8 0.00015 41.8 8.1 29 63-91 430-458 (652)
183 COG4942 Membrane-bound metallo 80.8 24 0.00053 36.0 11.7 17 26-42 110-126 (420)
184 KOG3650 Predicted coiled-coil 80.8 5 0.00011 34.3 5.9 72 58-129 45-116 (120)
185 KOG4196 bZIP transcription fac 80.7 7.6 0.00017 34.2 7.1 36 81-116 79-114 (135)
186 PLN02678 seryl-tRNA synthetase 80.5 17 0.00037 37.1 10.6 37 84-120 72-108 (448)
187 KOG3119 Basic region leucine z 80.5 6.7 0.00015 37.0 7.3 31 65-95 218-248 (269)
188 PF12718 Tropomyosin_1: Tropom 80.5 14 0.00031 31.8 8.8 18 92-109 37-54 (143)
189 PRK05431 seryl-tRNA synthetase 80.3 21 0.00045 35.8 11.0 36 85-120 68-103 (425)
190 PF09789 DUF2353: Uncharacteri 80.2 6.9 0.00015 38.5 7.5 56 65-120 129-184 (319)
191 PF06632 XRCC4: DNA double-str 80.2 8.1 0.00018 38.1 8.0 52 62-113 130-181 (342)
192 KOG3560 Aryl-hydrocarbon recep 80.1 1.3 2.7E-05 46.9 2.6 45 20-65 27-75 (712)
193 PF09726 Macoilin: Transmembra 80.0 42 0.00091 36.2 13.7 16 63-78 546-561 (697)
194 TIGR01834 PHA_synth_III_E poly 79.9 8.9 0.00019 37.8 8.1 61 52-112 253-318 (320)
195 KOG2199 Signal transducing ada 79.9 60 0.0013 33.6 14.0 25 30-55 294-318 (462)
196 TIGR02209 ftsL_broad cell divi 79.9 16 0.00034 27.8 7.9 40 70-110 25-64 (85)
197 PF04325 DUF465: Protein of un 79.9 6.3 0.00014 28.1 5.4 18 93-110 30-47 (49)
198 KOG3119 Basic region leucine z 79.9 8 0.00017 36.5 7.6 59 62-120 194-252 (269)
199 PF07889 DUF1664: Protein of u 79.9 9.4 0.0002 33.0 7.4 45 66-110 65-109 (126)
200 PF10482 CtIP_N: Tumour-suppre 79.6 6.6 0.00014 34.0 6.3 50 57-106 69-119 (120)
201 COG0497 RecN ATPase involved i 79.6 19 0.00041 38.0 10.8 86 28-120 297-387 (557)
202 PRK05771 V-type ATP synthase s 79.4 7.7 0.00017 40.2 8.0 17 27-43 49-65 (646)
203 PF13815 Dzip-like_N: Iguana/D 79.3 12 0.00027 30.9 7.7 53 57-112 64-116 (118)
204 PF09304 Cortex-I_coil: Cortex 79.2 12 0.00026 31.9 7.6 42 65-106 33-74 (107)
205 TIGR02169 SMC_prok_A chromosom 79.2 22 0.00047 37.9 11.3 7 248-254 1074-1080(1164)
206 PF13094 CENP-Q: CENP-Q, a CEN 79.1 29 0.00062 29.8 10.2 74 52-125 17-90 (160)
207 COG2919 Septum formation initi 78.8 17 0.00037 30.3 8.4 55 62-120 43-97 (117)
208 PF09726 Macoilin: Transmembra 78.6 14 0.00031 39.6 9.8 16 91-106 595-610 (697)
209 KOG0249 LAR-interacting protei 78.4 15 0.00032 40.3 9.8 55 57-111 204-258 (916)
210 TIGR03185 DNA_S_dndD DNA sulfu 78.4 8.5 0.00018 39.9 7.9 28 98-125 263-290 (650)
211 KOG1924 RhoA GTPase effector D 78.4 18 0.00038 40.3 10.4 34 224-257 650-684 (1102)
212 PF10018 Med4: Vitamin-D-recep 78.3 27 0.00059 31.0 10.1 41 62-102 22-62 (188)
213 KOG4196 bZIP transcription fac 78.3 26 0.00057 30.9 9.7 37 74-110 79-115 (135)
214 PRK10803 tol-pal system protei 78.3 10 0.00022 35.5 7.7 43 66-108 58-100 (263)
215 PRK02224 chromosome segregatio 78.3 16 0.00035 38.5 10.0 45 65-109 352-396 (880)
216 PF10146 zf-C4H2: Zinc finger- 78.1 19 0.00041 33.7 9.4 68 54-121 31-105 (230)
217 PF10473 CENP-F_leu_zip: Leuci 78.0 21 0.00045 31.4 9.0 11 31-41 20-30 (140)
218 TIGR02338 gimC_beta prefoldin, 78.0 11 0.00024 30.7 7.0 61 35-96 38-101 (110)
219 KOG0250 DNA repair protein RAD 77.9 11 0.00023 42.6 8.8 15 164-178 547-561 (1074)
220 PF10211 Ax_dynein_light: Axon 77.7 17 0.00038 32.6 8.7 27 62-88 127-153 (189)
221 PRK13922 rod shape-determining 77.7 17 0.00036 33.6 8.8 20 81-100 74-93 (276)
222 TIGR00606 rad50 rad50. This fa 77.6 20 0.00044 40.4 11.0 64 57-120 307-370 (1311)
223 PF06810 Phage_GP20: Phage min 77.5 12 0.00025 32.9 7.4 40 61-100 26-68 (155)
224 PF10234 Cluap1: Clusterin-ass 77.3 9.3 0.0002 36.7 7.3 48 69-120 169-216 (267)
225 PF00804 Syntaxin: Syntaxin; 77.3 18 0.00038 27.3 7.5 21 56-76 11-31 (103)
226 KOG4360 Uncharacterized coiled 77.3 17 0.00036 38.4 9.5 63 51-113 211-284 (596)
227 PF07716 bZIP_2: Basic region 77.3 6.6 0.00014 28.3 4.9 29 62-90 25-53 (54)
228 KOG4447 Transcription factor T 77.2 1.5 3.2E-05 39.7 1.8 50 18-68 78-129 (173)
229 PF09744 Jnk-SapK_ap_N: JNK_SA 77.2 28 0.00061 31.0 9.7 58 62-119 89-146 (158)
230 KOG1962 B-cell receptor-associ 77.0 8 0.00017 36.3 6.6 54 54-107 154-210 (216)
231 PF15294 Leu_zip: Leucine zipp 77.0 10 0.00022 36.8 7.4 64 53-118 117-180 (278)
232 COG4026 Uncharacterized protei 76.9 28 0.0006 33.7 10.2 48 64-111 144-191 (290)
233 PF04999 FtsL: Cell division p 76.9 17 0.00037 28.6 7.6 16 92-107 51-66 (97)
234 KOG0982 Centrosomal protein Nu 76.8 12 0.00025 38.9 8.1 58 57-114 277-335 (502)
235 KOG4343 bZIP transcription fac 76.8 3.5 7.6E-05 43.5 4.6 42 62-103 302-343 (655)
236 PLN02320 seryl-tRNA synthetase 76.7 27 0.00058 36.3 10.8 56 65-120 103-167 (502)
237 KOG2629 Peroxisomal membrane a 76.7 24 0.00052 34.7 9.9 55 56-113 130-184 (300)
238 PRK02224 chromosome segregatio 76.7 20 0.00042 38.0 10.1 23 56-78 531-553 (880)
239 PF10018 Med4: Vitamin-D-recep 76.3 44 0.00096 29.7 10.8 22 172-195 118-139 (188)
240 TIGR02169 SMC_prok_A chromosom 76.2 30 0.00065 36.9 11.3 13 231-243 641-653 (1164)
241 COG1196 Smc Chromosome segrega 76.2 28 0.00061 38.8 11.5 40 70-109 871-910 (1163)
242 PF07352 Phage_Mu_Gam: Bacteri 76.2 22 0.00047 30.4 8.6 58 57-120 5-62 (149)
243 PF06810 Phage_GP20: Phage min 76.1 26 0.00056 30.7 9.2 51 68-118 26-79 (155)
244 PF11180 DUF2968: Protein of u 76.1 46 0.001 30.9 11.1 63 57-119 121-183 (192)
245 PF05377 FlaC_arch: Flagella a 76.0 12 0.00026 28.5 6.1 45 71-115 2-46 (55)
246 PRK02119 hypothetical protein; 75.8 21 0.00046 27.8 7.7 51 59-109 6-56 (73)
247 PF15070 GOLGA2L5: Putative go 75.7 10 0.00023 40.1 7.7 53 63-115 5-61 (617)
248 PRK03992 proteasome-activating 75.6 9.5 0.00021 37.2 7.0 46 65-110 4-49 (389)
249 PF00435 Spectrin: Spectrin re 75.6 8.4 0.00018 28.1 5.2 86 31-117 11-100 (105)
250 PF10224 DUF2205: Predicted co 75.5 24 0.00051 28.5 8.0 51 69-119 16-66 (80)
251 TIGR01554 major_cap_HK97 phage 75.3 8.6 0.00019 36.9 6.5 62 29-93 4-65 (378)
252 TIGR01069 mutS2 MutS2 family p 75.1 19 0.00041 38.9 9.6 11 56-66 498-508 (771)
253 KOG3156 Uncharacterized membra 75.0 21 0.00046 33.7 8.8 31 90-120 116-146 (220)
254 PF15397 DUF4618: Domain of un 74.8 11 0.00023 36.3 6.9 88 31-120 141-229 (258)
255 KOG3433 Protein involved in me 74.7 16 0.00035 34.0 7.8 50 62-111 81-144 (203)
256 KOG3977 Troponin I [Cytoskelet 74.6 21 0.00045 33.6 8.5 70 26-98 62-138 (221)
257 COG1579 Zn-ribbon protein, pos 74.6 8.4 0.00018 36.5 6.1 17 95-111 94-110 (239)
258 PF07926 TPR_MLP1_2: TPR/MLP1/ 74.6 19 0.00041 30.3 7.7 26 54-79 58-83 (132)
259 TIGR02168 SMC_prok_B chromosom 74.6 32 0.00069 36.4 10.9 7 236-242 645-651 (1179)
260 PF08581 Tup_N: Tup N-terminal 74.5 42 0.00092 26.8 10.2 11 32-42 1-11 (79)
261 TIGR02168 SMC_prok_B chromosom 74.2 25 0.00054 37.2 10.1 47 63-109 441-487 (1179)
262 PRK15396 murein lipoprotein; P 74.1 17 0.00037 29.1 6.9 41 70-110 26-66 (78)
263 PF03962 Mnd1: Mnd1 family; I 74.1 8.2 0.00018 34.7 5.7 26 85-110 137-162 (188)
264 KOG0994 Extracellular matrix g 74.0 14 0.00031 42.5 8.4 80 27-110 1200-1280(1758)
265 KOG3433 Protein involved in me 73.9 15 0.00032 34.3 7.3 12 57-68 100-111 (203)
266 KOG4797 Transcriptional regula 73.7 5.9 0.00013 34.2 4.4 49 57-107 50-98 (123)
267 PF09304 Cortex-I_coil: Cortex 73.6 34 0.00073 29.2 8.8 50 61-110 36-85 (107)
268 PF05837 CENP-H: Centromere pr 73.6 32 0.0007 28.2 8.6 54 62-116 17-70 (106)
269 KOG0241 Kinesin-like protein [ 73.5 17 0.00036 41.4 8.8 62 59-120 361-430 (1714)
270 TIGR02209 ftsL_broad cell divi 73.4 21 0.00046 27.1 7.1 31 66-96 28-58 (85)
271 PF03961 DUF342: Protein of un 73.3 22 0.00048 35.4 9.0 32 85-116 377-408 (451)
272 PF01496 V_ATPase_I: V-type AT 73.1 1.1 2.4E-05 47.1 0.0 63 63-128 68-130 (759)
273 PF05529 Bap31: B-cell recepto 72.9 36 0.00078 29.9 9.3 35 84-118 155-189 (192)
274 TIGR00414 serS seryl-tRNA synt 72.8 28 0.0006 34.8 9.6 36 85-120 71-106 (418)
275 PRK04654 sec-independent trans 72.4 34 0.00074 32.2 9.4 61 62-123 34-94 (214)
276 PF14257 DUF4349: Domain of un 72.3 29 0.00063 31.8 9.0 58 58-115 128-187 (262)
277 PF00435 Spectrin: Spectrin re 72.3 35 0.00075 24.8 11.3 58 58-115 30-91 (105)
278 KOG0977 Nuclear envelope prote 72.2 16 0.00034 38.5 7.9 15 24-38 38-52 (546)
279 PF05600 DUF773: Protein of un 72.2 30 0.00065 35.7 9.9 60 62-121 439-498 (507)
280 PF12709 Kinetocho_Slk19: Cent 72.2 14 0.00031 30.4 6.1 51 50-102 32-82 (87)
281 TIGR03185 DNA_S_dndD DNA sulfu 72.2 24 0.00052 36.7 9.3 34 91-124 263-296 (650)
282 PF15254 CCDC14: Coiled-coil d 72.1 23 0.00051 39.0 9.3 115 6-132 315-429 (861)
283 PF15070 GOLGA2L5: Putative go 71.9 28 0.00062 36.9 9.8 54 62-115 15-68 (617)
284 PF08700 Vps51: Vps51/Vps67; 71.4 41 0.00088 25.5 8.2 25 57-81 21-45 (87)
285 PRK02793 phi X174 lysis protei 71.4 24 0.00052 27.4 7.0 50 61-110 7-56 (72)
286 COG3879 Uncharacterized protei 71.2 26 0.00057 33.6 8.5 31 66-96 54-84 (247)
287 PF10883 DUF2681: Protein of u 71.1 21 0.00046 29.2 6.9 38 56-93 17-54 (87)
288 TIGR03545 conserved hypothetic 71.0 20 0.00044 37.4 8.5 34 84-117 220-253 (555)
289 PRK15396 murein lipoprotein; P 70.6 27 0.00059 28.0 7.3 48 63-110 26-73 (78)
290 PF04102 SlyX: SlyX; InterPro 70.6 21 0.00045 27.3 6.4 49 62-110 4-52 (69)
291 PF09730 BicD: Microtubule-ass 70.5 20 0.00044 38.8 8.5 49 62-110 62-117 (717)
292 PRK11546 zraP zinc resistance 70.3 19 0.00042 31.8 7.0 28 92-119 91-118 (143)
293 PRK06800 fliH flagellar assemb 70.2 23 0.0005 33.3 7.8 49 71-119 40-88 (228)
294 PRK09343 prefoldin subunit bet 70.2 23 0.00049 29.7 7.1 74 36-124 43-119 (121)
295 PF15619 Lebercilin: Ciliary p 70.1 57 0.0012 29.7 10.2 31 86-116 160-190 (194)
296 PF09787 Golgin_A5: Golgin sub 70.1 14 0.00031 37.5 7.0 88 25-117 211-308 (511)
297 PRK04863 mukB cell division pr 70.0 20 0.00043 41.6 8.8 93 27-120 948-1043(1486)
298 PF11544 Spc42p: Spindle pole 70.0 33 0.00072 27.7 7.6 52 59-110 2-53 (76)
299 COG3352 FlaC Putative archaeal 69.7 41 0.00089 30.4 8.9 70 56-125 73-143 (157)
300 PF04325 DUF465: Protein of un 69.6 21 0.00046 25.4 5.9 40 64-103 8-47 (49)
301 KOG0995 Centromere-associated 69.6 20 0.00043 38.1 8.0 10 33-42 247-256 (581)
302 PF07407 Seadorna_VP6: Seadorn 69.1 9.4 0.0002 38.5 5.3 33 58-90 28-60 (420)
303 PF14988 DUF4515: Domain of un 69.1 34 0.00073 31.4 8.6 47 64-110 151-197 (206)
304 PF14645 Chibby: Chibby family 69.0 15 0.00033 31.0 5.9 46 68-113 70-115 (116)
305 KOG0288 WD40 repeat protein Ti 69.0 34 0.00073 35.4 9.2 57 56-112 41-105 (459)
306 KOG1029 Endocytic adaptor prot 68.9 9 0.00019 42.4 5.5 38 81-118 484-521 (1118)
307 PF11544 Spc42p: Spindle pole 68.6 32 0.0007 27.8 7.3 50 66-115 2-51 (76)
308 PLN03188 kinesin-12 family pro 68.5 30 0.00065 39.9 9.6 89 25-122 1127-1250(1320)
309 KOG3647 Predicted coiled-coil 68.5 34 0.00075 33.8 8.8 53 65-121 108-160 (338)
310 COG1256 FlgK Flagellar hook-as 68.2 33 0.00072 35.9 9.3 77 29-106 109-186 (552)
311 PF12128 DUF3584: Protein of u 68.1 41 0.00089 37.8 10.6 32 96-131 742-773 (1201)
312 PRK14127 cell division protein 68.0 21 0.00045 30.2 6.4 25 86-110 40-64 (109)
313 COG1792 MreC Cell shape-determ 67.9 17 0.00036 34.7 6.6 8 100-107 93-100 (284)
314 smart00502 BBC B-Box C-termina 67.9 55 0.0012 25.3 11.4 10 101-110 76-85 (127)
315 COG0216 PrfA Protein chain rel 67.9 39 0.00084 34.1 9.3 85 31-115 10-101 (363)
316 PRK04863 mukB cell division pr 67.8 30 0.00065 40.3 9.6 18 96-113 403-420 (1486)
317 PF07412 Geminin: Geminin; In 67.7 12 0.00027 34.7 5.5 48 62-109 107-158 (200)
318 PF11365 DUF3166: Protein of u 67.2 20 0.00043 29.9 6.1 39 72-110 4-42 (96)
319 PF14523 Syntaxin_2: Syntaxin- 67.2 44 0.00095 26.0 7.8 54 66-119 30-86 (102)
320 PF00769 ERM: Ezrin/radixin/mo 67.1 25 0.00055 32.8 7.5 56 59-114 58-113 (246)
321 PF09755 DUF2046: Uncharacteri 67.1 48 0.001 32.8 9.6 18 34-57 80-97 (310)
322 cd00632 Prefoldin_beta Prefold 67.1 24 0.00052 28.4 6.4 50 61-110 55-104 (105)
323 PTZ00454 26S protease regulato 67.1 13 0.00028 36.8 5.9 45 70-114 16-60 (398)
324 KOG0804 Cytoplasmic Zn-finger 67.0 65 0.0014 33.7 10.8 27 63-89 383-409 (493)
325 KOG0614 cGMP-dependent protein 67.0 38 0.00082 36.5 9.4 44 66-109 28-71 (732)
326 PF12329 TMF_DNA_bd: TATA elem 66.9 59 0.0013 25.3 8.7 45 66-110 23-67 (74)
327 TIGR02492 flgK_ends flagellar 66.9 45 0.00097 31.8 9.2 76 31-107 107-183 (322)
328 PF12777 MT: Microtubule-bindi 66.8 17 0.00036 35.1 6.4 45 57-101 230-274 (344)
329 PF04420 CHD5: CHD5-like prote 66.7 20 0.00043 31.4 6.3 52 58-109 36-92 (161)
330 PF12777 MT: Microtubule-bindi 66.5 38 0.00083 32.7 8.8 47 64-110 230-276 (344)
331 PF03961 DUF342: Protein of un 66.5 40 0.00086 33.6 9.2 56 60-115 332-400 (451)
332 COG4467 Regulator of replicati 66.5 26 0.00056 30.2 6.7 48 51-98 1-51 (114)
333 PF05701 WEMBL: Weak chloropla 66.3 33 0.00072 35.1 8.8 21 76-96 309-329 (522)
334 PF13815 Dzip-like_N: Iguana/D 66.2 21 0.00045 29.6 6.1 94 19-115 14-112 (118)
335 PF06120 Phage_HK97_TLTM: Tail 66.2 63 0.0014 31.7 10.2 31 55-85 74-104 (301)
336 KOG0996 Structural maintenance 66.1 46 0.001 38.3 10.3 79 32-112 803-893 (1293)
337 KOG3753 Circadian clock protei 66.0 9.5 0.00021 42.5 5.0 27 139-165 805-834 (1114)
338 PF02388 FemAB: FemAB family; 65.6 37 0.00079 33.5 8.6 50 61-110 241-293 (406)
339 PRK14127 cell division protein 65.6 13 0.00029 31.3 4.9 38 56-93 31-68 (109)
340 PRK00409 recombination and DNA 65.3 40 0.00088 36.4 9.5 17 90-106 548-564 (782)
341 KOG2010 Double stranded RNA bi 65.1 8.1 0.00018 38.8 4.0 18 52-69 101-118 (405)
342 COG5481 Uncharacterized conser 65.0 39 0.00084 26.6 6.9 47 67-113 9-61 (67)
343 TIGR00414 serS seryl-tRNA synt 64.9 37 0.00079 33.9 8.6 52 64-115 39-94 (418)
344 PRK00295 hypothetical protein; 64.8 48 0.001 25.5 7.4 48 63-110 6-53 (68)
345 KOG0243 Kinesin-like protein [ 64.8 31 0.00068 38.9 8.7 23 50-72 399-421 (1041)
346 PF05816 TelA: Toxic anion res 64.7 63 0.0014 31.2 9.9 73 31-107 49-126 (333)
347 PRK05431 seryl-tRNA synthetase 64.7 37 0.0008 34.0 8.5 53 62-114 35-90 (425)
348 PF13747 DUF4164: Domain of un 64.6 43 0.00094 27.0 7.4 32 65-96 35-66 (89)
349 TIGR02977 phageshock_pspA phag 64.6 1.1E+02 0.0023 27.8 10.8 71 32-107 67-137 (219)
350 KOG4643 Uncharacterized coiled 64.6 24 0.00052 39.9 7.8 51 67-117 175-225 (1195)
351 PF02050 FliJ: Flagellar FliJ 64.2 61 0.0013 24.6 8.3 59 57-115 7-70 (123)
352 PF01166 TSC22: TSC-22/dip/bun 64.2 15 0.00032 28.5 4.4 28 82-109 13-40 (59)
353 PRK01156 chromosome segregatio 64.2 70 0.0015 34.2 10.9 46 57-102 676-721 (895)
354 KOG3584 cAMP response element 64.1 6.8 0.00015 38.7 3.3 30 61-90 311-340 (348)
355 PF04799 Fzo_mitofusin: fzo-li 64.0 37 0.0008 30.9 7.6 18 95-112 149-166 (171)
356 PF09755 DUF2046: Uncharacteri 63.8 30 0.00064 34.2 7.5 41 65-105 23-63 (310)
357 PF02996 Prefoldin: Prefoldin 63.8 27 0.00059 27.8 6.2 31 57-90 75-105 (120)
358 PRK14161 heat shock protein Gr 63.8 36 0.00078 30.7 7.5 45 52-96 9-53 (178)
359 PF00769 ERM: Ezrin/radixin/mo 63.8 35 0.00075 31.9 7.7 20 95-114 80-99 (246)
360 PF13863 DUF4200: Domain of un 63.7 63 0.0014 26.1 8.4 43 79-122 77-119 (126)
361 PF11068 YlqD: YlqD protein; 63.5 94 0.002 26.9 9.7 61 53-113 18-83 (131)
362 PF09728 Taxilin: Myosin-like 63.5 73 0.0016 30.8 10.1 55 61-115 250-304 (309)
363 KOG4395 Transcription factor A 63.4 12 0.00025 36.5 4.6 52 17-69 173-227 (285)
364 COG3352 FlaC Putative archaeal 63.4 37 0.00079 30.7 7.4 56 62-117 72-128 (157)
365 COG4238 Murein lipoprotein [Ce 63.4 43 0.00094 27.2 7.1 47 64-110 27-73 (78)
366 KOG0243 Kinesin-like protein [ 63.3 22 0.00047 40.1 7.2 57 64-120 443-499 (1041)
367 PF05384 DegS: Sensor protein 63.2 61 0.0013 29.0 8.8 55 56-113 3-57 (159)
368 PLN02678 seryl-tRNA synthetase 63.1 43 0.00093 34.2 8.8 51 65-115 43-96 (448)
369 PF10267 Tmemb_cc2: Predicted 63.1 58 0.0013 33.0 9.6 49 69-117 276-325 (395)
370 PF08826 DMPK_coil: DMPK coile 62.9 38 0.00083 26.0 6.5 41 74-114 16-56 (61)
371 PF10779 XhlA: Haemolysin XhlA 62.8 48 0.001 25.2 7.1 46 65-110 2-47 (71)
372 TIGR01242 26Sp45 26S proteasom 62.6 15 0.00033 35.0 5.3 32 78-109 8-39 (364)
373 PF04999 FtsL: Cell division p 62.6 40 0.00087 26.4 6.8 42 68-110 34-75 (97)
374 PF15035 Rootletin: Ciliary ro 62.5 43 0.00094 30.2 7.9 28 67-94 86-113 (182)
375 PF13863 DUF4200: Domain of un 62.3 82 0.0018 25.4 11.7 33 84-116 75-107 (126)
376 PF14931 IFT20: Intraflagellar 62.2 78 0.0017 27.0 8.9 59 57-115 43-105 (120)
377 PF13805 Pil1: Eisosome compon 62.2 1.5E+02 0.0031 28.9 11.7 84 26-123 143-230 (271)
378 TIGR02977 phageshock_pspA phag 62.1 68 0.0015 29.1 9.1 50 62-111 99-148 (219)
379 PF07439 DUF1515: Protein of u 62.0 66 0.0014 27.7 8.3 63 57-123 3-69 (112)
380 PRK03992 proteasome-activating 62.0 28 0.0006 34.0 7.0 41 63-103 9-49 (389)
381 PF10351 Apt1: Golgi-body loca 62.0 85 0.0019 31.2 10.5 50 57-106 92-145 (457)
382 PF12938 M_domain: M domain of 61.9 32 0.00069 32.8 7.1 57 59-115 147-203 (235)
383 PF10458 Val_tRNA-synt_C: Valy 61.9 65 0.0014 24.1 7.8 18 96-113 45-62 (66)
384 KOG4571 Activating transcripti 61.9 29 0.00063 34.1 7.0 36 80-115 245-280 (294)
385 PF08286 Spc24: Spc24 subunit 61.7 2.5 5.3E-05 35.0 -0.2 41 74-114 4-44 (118)
386 PF05103 DivIVA: DivIVA protei 61.7 7.2 0.00016 31.5 2.6 44 56-99 26-69 (131)
387 TIGR00634 recN DNA repair prot 61.6 23 0.0005 36.3 6.6 48 55-103 148-195 (563)
388 PF10226 DUF2216: Uncharacteri 61.5 37 0.00081 31.6 7.3 59 54-116 40-98 (195)
389 PRK00736 hypothetical protein; 61.4 53 0.0012 25.2 7.1 49 62-110 5-53 (68)
390 PF15215 FDC-SP: Follicular de 61.3 18 0.00039 28.5 4.5 10 156-165 41-50 (67)
391 PF03276 Gag_spuma: Spumavirus 61.3 1.7E+02 0.0036 31.4 12.7 8 103-110 160-167 (582)
392 PF02996 Prefoldin: Prefoldin 61.3 36 0.00078 27.2 6.5 46 65-110 73-118 (120)
393 PF10506 MCC-bdg_PDZ: PDZ doma 61.3 51 0.0011 25.8 7.0 56 65-120 1-58 (67)
394 COG3879 Uncharacterized protei 61.3 38 0.00081 32.5 7.5 29 61-89 56-84 (247)
395 PF10267 Tmemb_cc2: Predicted 61.0 77 0.0017 32.2 10.0 76 24-106 205-285 (395)
396 PRK14160 heat shock protein Gr 61.0 42 0.0009 31.3 7.6 21 87-107 72-92 (211)
397 COG5185 HEC1 Protein involved 61.0 33 0.00072 36.2 7.6 57 57-116 485-545 (622)
398 KOG0244 Kinesin-like protein [ 60.9 21 0.00046 39.7 6.5 60 59-120 327-386 (913)
399 smart00503 SynN Syntaxin N-ter 60.9 78 0.0017 24.7 8.4 88 31-118 18-117 (117)
400 PF07989 Microtub_assoc: Micro 60.8 30 0.00066 27.2 5.8 39 82-120 35-73 (75)
401 PF03954 Lectin_N: Hepatic lec 60.7 25 0.00055 31.1 5.8 62 58-119 47-116 (138)
402 TIGR02680 conserved hypothetic 60.6 50 0.0011 37.8 9.6 17 27-43 236-252 (1353)
403 PRK10328 DNA binding protein, 60.5 56 0.0012 28.4 7.9 69 59-133 6-77 (134)
404 KOG1853 LIS1-interacting prote 60.5 59 0.0013 32.0 8.8 56 55-110 52-111 (333)
405 PRK07739 flgK flagellar hook-a 60.4 67 0.0015 32.8 9.6 76 31-107 119-195 (507)
406 PF06705 SF-assemblin: SF-asse 60.3 48 0.001 30.4 7.9 11 25-35 52-62 (247)
407 PF04012 PspA_IM30: PspA/IM30 60.3 78 0.0017 28.2 9.0 79 33-111 67-147 (221)
408 PF04859 DUF641: Plant protein 60.3 48 0.001 28.9 7.4 73 25-103 52-128 (131)
409 PF06548 Kinesin-related: Kine 60.1 69 0.0015 33.5 9.6 88 25-121 357-479 (488)
410 KOG0933 Structural maintenance 60.1 49 0.0011 37.7 9.1 84 18-113 776-859 (1174)
411 PRK15365 type III secretion sy 60.1 1.1E+02 0.0024 26.2 9.9 78 35-120 6-92 (107)
412 PRK03947 prefoldin subunit alp 60.1 40 0.00086 28.1 6.8 42 57-101 92-133 (140)
413 KOG0971 Microtubule-associated 60.0 36 0.00079 38.4 8.1 27 84-110 404-430 (1243)
414 PRK10947 global DNA-binding tr 59.9 66 0.0014 28.0 8.2 69 59-133 6-77 (135)
415 PF08702 Fib_alpha: Fibrinogen 59.9 36 0.00078 29.7 6.7 37 73-109 94-130 (146)
416 PF07889 DUF1664: Protein of u 59.9 80 0.0017 27.3 8.6 30 59-88 79-108 (126)
417 PRK04406 hypothetical protein; 59.8 53 0.0012 25.8 7.0 46 62-107 11-56 (75)
418 PF13747 DUF4164: Domain of un 59.7 50 0.0011 26.6 7.0 16 63-78 9-24 (89)
419 PF10498 IFT57: Intra-flagella 59.7 42 0.00091 33.3 7.8 52 57-108 268-319 (359)
420 PF10205 KLRAQ: Predicted coil 59.4 92 0.002 26.4 8.7 50 67-116 24-73 (102)
421 KOG4343 bZIP transcription fac 59.2 30 0.00065 36.9 7.0 38 76-113 302-339 (655)
422 KOG1029 Endocytic adaptor prot 59.2 50 0.0011 36.9 8.8 59 61-119 485-553 (1118)
423 PF10168 Nup88: Nuclear pore c 59.1 87 0.0019 33.9 10.6 35 86-120 635-669 (717)
424 PRK14153 heat shock protein Gr 59.0 34 0.00073 31.5 6.6 31 80-110 37-67 (194)
425 KOG2509 Seryl-tRNA synthetase 58.9 77 0.0017 32.9 9.7 43 90-134 89-131 (455)
426 PF12999 PRKCSH-like: Glucosid 58.9 43 0.00094 30.5 7.2 22 88-109 151-172 (176)
427 PRK04325 hypothetical protein; 58.8 59 0.0013 25.4 7.1 48 62-109 9-56 (74)
428 PF12711 Kinesin-relat_1: Kine 58.8 28 0.0006 28.5 5.4 12 65-76 27-38 (86)
429 PRK03947 prefoldin subunit alp 58.8 37 0.0008 28.3 6.4 48 65-112 90-137 (140)
430 KOG2751 Beclin-like protein [S 58.7 34 0.00074 35.4 7.1 25 67-91 181-205 (447)
431 cd00176 SPEC Spectrin repeats, 58.7 1E+02 0.0022 25.2 10.9 84 30-114 9-103 (213)
432 KOG2077 JNK/SAPK-associated pr 58.6 26 0.00056 37.8 6.5 23 66-88 326-348 (832)
433 PF08961 DUF1875: Domain of un 58.3 3.3 7.1E-05 39.4 0.0 39 64-102 124-162 (243)
434 smart00340 HALZ homeobox assoc 58.3 24 0.00053 25.9 4.4 29 82-110 4-32 (44)
435 PF10168 Nup88: Nuclear pore c 58.3 61 0.0013 35.0 9.3 67 54-120 538-619 (717)
436 TIGR01795 CM_mono_cladeE monof 58.2 17 0.00037 29.4 4.1 70 61-131 2-71 (94)
437 PF10481 CENP-F_N: Cenp-F N-te 57.7 42 0.00091 33.1 7.3 27 53-79 9-35 (307)
438 cd00890 Prefoldin Prefoldin is 57.6 40 0.00087 27.0 6.2 32 65-96 90-121 (129)
439 PRK09343 prefoldin subunit bet 57.5 57 0.0012 27.3 7.2 45 50-94 66-110 (121)
440 PRK00591 prfA peptide chain re 57.3 1.2E+02 0.0027 30.3 10.7 23 93-115 78-100 (359)
441 PRK07521 flgK flagellar hook-a 57.3 64 0.0014 32.6 8.9 76 31-107 102-178 (483)
442 PRK04778 septation ring format 57.2 1E+02 0.0023 31.8 10.5 55 56-110 377-431 (569)
443 PLN02939 transferase, transfer 57.2 36 0.00078 38.2 7.6 27 88-114 224-250 (977)
444 PF06637 PV-1: PV-1 protein (P 57.1 1.4E+02 0.003 30.9 11.0 34 86-119 352-385 (442)
445 PRK14148 heat shock protein Gr 57.1 39 0.00085 31.0 6.7 33 78-110 42-74 (195)
446 PRK07191 flgK flagellar hook-a 57.1 71 0.0015 32.1 9.1 75 31-106 107-182 (456)
447 PF15030 DUF4527: Protein of u 57.0 1.3E+02 0.0029 29.3 10.4 18 26-43 14-31 (277)
448 PF04849 HAP1_N: HAP1 N-termin 57.0 66 0.0014 31.7 8.6 59 62-120 234-292 (306)
449 PF12711 Kinesin-relat_1: Kine 56.8 1.1E+02 0.0023 25.2 8.4 18 96-113 50-67 (86)
450 KOG4360 Uncharacterized coiled 56.7 84 0.0018 33.5 9.6 58 56-113 241-298 (596)
451 smart00150 SPEC Spectrin repea 56.7 74 0.0016 23.1 11.3 57 33-90 10-66 (101)
452 PRK09973 putative outer membra 56.6 53 0.0012 26.9 6.7 39 63-101 25-63 (85)
453 PF13514 AAA_27: AAA domain 56.5 1.7E+02 0.0036 32.7 12.5 110 27-136 309-449 (1111)
454 PRK05683 flgK flagellar hook-a 56.5 58 0.0013 34.9 8.7 75 32-107 108-183 (676)
455 PF07407 Seadorna_VP6: Seadorn 56.4 37 0.00081 34.4 6.9 31 77-107 33-63 (420)
456 KOG0249 LAR-interacting protei 56.4 44 0.00095 36.9 7.8 40 76-115 216-255 (916)
457 PF14723 SSFA2_C: Sperm-specif 56.3 1.2E+02 0.0027 27.9 9.6 35 86-120 141-175 (179)
458 PF01763 Herpes_UL6: Herpesvir 56.2 32 0.0007 36.3 6.7 26 88-113 375-400 (557)
459 PF10234 Cluap1: Clusterin-ass 56.1 95 0.0021 30.0 9.3 56 61-116 175-237 (267)
460 KOG0963 Transcription factor/C 56.0 1E+02 0.0022 33.3 10.3 68 49-116 272-343 (629)
461 PF13600 DUF4140: N-terminal d 56.0 23 0.00049 28.0 4.5 30 79-108 73-102 (104)
462 COG1730 GIM5 Predicted prefold 55.9 51 0.0011 29.1 6.9 43 57-102 92-134 (145)
463 PRK10698 phage shock protein P 55.7 98 0.0021 28.5 9.1 50 61-110 98-147 (222)
464 KOG3850 Predicted membrane pro 55.7 1.1E+02 0.0023 31.7 10.0 50 70-119 325-376 (455)
465 TIGR01242 26Sp45 26S proteasom 55.6 24 0.00052 33.7 5.3 36 69-104 6-41 (364)
466 PRK06665 flgK flagellar hook-a 55.6 78 0.0017 33.4 9.4 75 32-107 120-195 (627)
467 PF09969 DUF2203: Uncharacteri 55.3 1E+02 0.0022 26.2 8.4 22 98-119 44-65 (120)
468 KOG0946 ER-Golgi vesicle-tethe 55.0 1.4E+02 0.0031 33.5 11.3 48 59-106 647-694 (970)
469 PF03980 Nnf1: Nnf1 ; InterPr 55.0 27 0.00059 28.1 4.8 14 93-106 90-103 (109)
470 PF10549 ORF11CD3: ORF11CD3 do 54.7 61 0.0013 24.7 6.3 29 89-117 26-54 (57)
471 PF04880 NUDE_C: NUDE protein, 54.7 24 0.00053 31.8 4.9 39 57-106 9-47 (166)
472 TIGR03007 pepcterm_ChnLen poly 54.6 1.5E+02 0.0032 29.4 10.7 14 100-113 358-371 (498)
473 PRK11020 hypothetical protein; 54.5 1.1E+02 0.0024 26.6 8.6 57 31-95 8-65 (118)
474 PF01486 K-box: K-box region; 54.5 1.1E+02 0.0024 24.4 9.4 79 24-107 20-99 (100)
475 PF00261 Tropomyosin: Tropomyo 54.4 1E+02 0.0022 28.2 9.0 56 64-119 178-233 (237)
476 PF11855 DUF3375: Protein of u 54.2 1.2E+02 0.0025 31.0 10.1 87 31-119 122-214 (478)
477 PLN02320 seryl-tRNA synthetase 54.2 68 0.0015 33.5 8.6 54 61-114 92-154 (502)
478 PF06698 DUF1192: Protein of u 54.2 26 0.00056 26.9 4.2 23 94-116 25-47 (59)
479 KOG4348 Adaptor protein CMS/SE 54.2 46 0.00099 35.1 7.2 50 63-112 570-623 (627)
480 PF12252 SidE: Dot/Icm substra 54.1 1.1E+02 0.0023 35.5 10.5 76 37-114 1079-1170(1439)
481 TIGR00020 prfB peptide chain r 53.9 1.2E+02 0.0026 30.4 10.0 80 31-110 26-112 (364)
482 PF07047 OPA3: Optic atrophy 3 53.8 80 0.0017 26.9 7.7 9 55-63 77-85 (134)
483 KOG0976 Rho/Rac1-interacting s 53.7 33 0.00071 38.5 6.4 65 57-121 339-403 (1265)
484 PF13118 DUF3972: Protein of u 53.7 67 0.0015 28.1 7.2 34 55-88 71-104 (126)
485 PF08647 BRE1: BRE1 E3 ubiquit 53.6 71 0.0015 25.8 7.0 36 69-104 31-66 (96)
486 PF07195 FliD_C: Flagellar hoo 53.6 52 0.0011 30.0 6.9 42 79-120 189-230 (239)
487 PF09766 FimP: Fms-interacting 53.4 59 0.0013 31.9 7.7 45 79-123 104-148 (355)
488 PRK08147 flgK flagellar hook-a 53.4 96 0.0021 31.8 9.5 75 32-107 109-184 (547)
489 PF05700 BCAS2: Breast carcino 53.4 1.3E+02 0.0028 27.5 9.4 62 55-116 143-215 (221)
490 PF04849 HAP1_N: HAP1 N-termin 53.4 66 0.0014 31.7 7.9 59 57-115 208-266 (306)
491 TIGR01000 bacteriocin_acc bact 53.3 93 0.002 30.9 9.1 63 53-115 234-309 (457)
492 KOG4603 TBP-1 interacting prot 53.3 73 0.0016 29.7 7.7 53 64-120 88-142 (201)
493 KOG4302 Microtubule-associated 53.1 1.4E+02 0.003 32.5 10.8 90 30-120 74-183 (660)
494 KOG3366 Mitochondrial F1F0-ATP 53.1 1.5E+02 0.0032 27.3 9.6 94 27-127 33-134 (172)
495 PHA02557 22 prohead core prote 53.1 1.6E+02 0.0034 28.9 10.3 79 31-114 122-200 (271)
496 COG4985 ABC-type phosphate tra 52.9 85 0.0018 30.6 8.4 60 57-116 166-247 (289)
497 cd00890 Prefoldin Prefoldin is 52.9 57 0.0012 26.1 6.4 42 74-115 85-126 (129)
498 PF04136 Sec34: Sec34-like fam 52.8 1.2E+02 0.0027 26.5 8.8 58 57-114 16-73 (157)
499 TIGR03017 EpsF chain length de 52.8 2.3E+02 0.0049 27.5 12.8 112 27-138 260-394 (444)
500 PF13514 AAA_27: AAA domain 52.8 2E+02 0.0044 32.1 12.4 96 27-130 628-723 (1111)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.33 E-value=2.4e-12 Score=91.45 Aligned_cols=55 Identities=35% Similarity=0.479 Sum_probs=48.9
Q ss_pred hhhccchHHHHHHHHHHHHHHHHhhhccCCC--CCCCChhhhHHHHHHHHHHHHHHH
Q 022288 17 TRKMQKADREKLRRDRLNEHFTELGNALDPD--RPKNDKATILADTVQLLKDLTSQV 71 (299)
Q Consensus 17 ~Rk~~KAerERrRRdKLNErF~eLrslLvP~--~~K~DKASIL~DAI~ylKdLr~qV 71 (299)
.++..|..+||+||++||+.|.+|+.+|++. ..|.||++||..||+||+.|+.++
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4667788999999999999999999986555 279999999999999999999876
No 2
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.30 E-value=3.2e-12 Score=91.22 Aligned_cols=51 Identities=37% Similarity=0.594 Sum_probs=45.8
Q ss_pred hhccchHHHHHHHHHHHHHHHHhhhccCCC----CCCCChhhhHHHHHHHHHHHH
Q 022288 18 RKMQKADREKLRRDRLNEHFTELGNALDPD----RPKNDKATILADTVQLLKDLT 68 (299)
Q Consensus 18 Rk~~KAerERrRRdKLNErF~eLrslLvP~----~~K~DKASIL~DAI~ylKdLr 68 (299)
|+..|+.+||+||++||+.|.+|+.+|++. ..|.+|++||..||+||++|+
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 467788999999999999999999997654 259999999999999999986
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.29 E-value=6.6e-12 Score=88.04 Aligned_cols=49 Identities=35% Similarity=0.539 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHhhhccCC--CCCCCChhhhHHHHHHHHHHHHHHHH
Q 022288 24 DREKLRRDRLNEHFTELGNALDP--DRPKNDKATILADTVQLLKDLTSQVE 72 (299)
Q Consensus 24 erERrRRdKLNErF~eLrslLvP--~~~K~DKASIL~DAI~ylKdLr~qVq 72 (299)
.+||+||++||+.|..|+.+|++ ...|.||++||.+||+||+.|+.+++
T Consensus 2 ~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 2 ARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999998544 45699999999999999999998875
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.17 E-value=6.5e-11 Score=116.38 Aligned_cols=82 Identities=23% Similarity=0.466 Sum_probs=60.5
Q ss_pred hhhccchHHHHHHHHHHHHHHHHhhhccCCCCC----CCChhhhHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHH
Q 022288 17 TRKMQKADREKLRRDRLNEHFTELGNALDPDRP----KNDKATILADTVQLLKDLTSQVEKLKT---EHAALTEESRELT 89 (299)
Q Consensus 17 ~Rk~~KAerERrRRdKLNErF~eLrslLvP~~~----K~DKASIL~DAI~ylKdLr~qVq~Lk~---en~~L~eE~~eLk 89 (299)
-||-.|++.|||||++||+|+.+|+.| +|... +..|++||..+++||++|+...++..+ ....|+..++.|.
T Consensus 232 ~Krd~HNeVERRRR~nIN~~IkeLg~l-iP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n~~L~ 310 (411)
T KOG1318|consen 232 RKRDNHNEVERRRRENINDRIKELGQL-IPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTNQELA 310 (411)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHh-CCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHH
Confidence 567778899999999999999999998 56552 667999999999999999988774433 3334455555555
Q ss_pred HHHHHHHHHH
Q 022288 90 QEKNDLREEK 99 (299)
Q Consensus 90 ~EkNELRdEn 99 (299)
..+.||+.+.
T Consensus 311 ~rieeLk~~~ 320 (411)
T KOG1318|consen 311 LRIEELKSEA 320 (411)
T ss_pred HHHHHHHHHH
Confidence 5544444433
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.55 E-value=2.4e-07 Score=84.56 Aligned_cols=78 Identities=24% Similarity=0.341 Sum_probs=69.2
Q ss_pred hhccchHHHHHHHHHHHHHHHHhhhccCCCCC-------CCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022288 18 RKMQKADREKLRRDRLNEHFTELGNALDPDRP-------KNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQ 90 (299)
Q Consensus 18 Rk~~KAerERrRRdKLNErF~eLrslLvP~~~-------K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~ 90 (299)
||..|-.+|++|||-||.-+..|..| +|..+ |..||.||-.+|+||..|..++.+-+++..+|+.++-.|+.
T Consensus 62 rr~aHtqaEqkRRdAIk~GYddLq~L-vP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL~i 140 (229)
T KOG1319|consen 62 RRRAHTQAEQKRRDAIKRGYDDLQTL-VPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKI 140 (229)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHh-ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666688999999999999999996 78442 78899999999999999999999999999999999999998
Q ss_pred HHHHHH
Q 022288 91 EKNDLR 96 (299)
Q Consensus 91 EkNELR 96 (299)
=+++..
T Consensus 141 Ik~~YE 146 (229)
T KOG1319|consen 141 IKVNYE 146 (229)
T ss_pred HHHHHH
Confidence 877754
No 6
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.35 E-value=2.4e-06 Score=79.09 Aligned_cols=87 Identities=20% Similarity=0.309 Sum_probs=63.9
Q ss_pred cccchhhhhhccchHHHHHHHHHHHHHHHHhhhccCCCCCCCC--hhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 022288 10 EVKDCAATRKMQKADREKLRRDRLNEHFTELGNALDPDRPKND--KATILADTVQLLKDLTSQVEKLKTEHAALTEESRE 87 (299)
Q Consensus 10 e~~~~~a~Rk~~KAerERrRRdKLNErF~eLrslLvP~~~K~D--KASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~e 87 (299)
......+.++.+|++-||+||++|.+.|..|+.+++......+ -++||..|++||+.|+.........++.|..+...
T Consensus 51 ~a~~~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~ 130 (232)
T KOG2483|consen 51 PATSSAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDLSRENRK 130 (232)
T ss_pred CCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3333456778888999999999999999999998443334333 58999999999999998887776666555555555
Q ss_pred HHHHHHHHH
Q 022288 88 LTQEKNDLR 96 (299)
Q Consensus 88 Lk~EkNELR 96 (299)
|+.+.++|.
T Consensus 131 l~~rl~ql~ 139 (232)
T KOG2483|consen 131 LKARLEQLS 139 (232)
T ss_pred HHHHHHHhc
Confidence 555554443
No 7
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.22 E-value=9.6e-07 Score=82.14 Aligned_cols=58 Identities=36% Similarity=0.472 Sum_probs=50.3
Q ss_pred hhhhhhccchHHHHHHHHHHHHHHHHhhhccCCC--------CCCCChhhhHHHHHHHHHHHHHHHH
Q 022288 14 CAATRKMQKADREKLRRDRLNEHFTELGNALDPD--------RPKNDKATILADTVQLLKDLTSQVE 72 (299)
Q Consensus 14 ~~a~Rk~~KAerERrRRdKLNErF~eLrslLvP~--------~~K~DKASIL~DAI~ylKdLr~qVq 72 (299)
....||+.|-.-|||||+|||+-+.+|+.|| +. .+|++||-||.-|++||+.|+....
T Consensus 28 ~~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li-~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 28 TRQYRKVRKPLLEKKRRARINRCLDELKDLI-PEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred hHHHhhhcchhHHHHHHHHHHHHHHHHHHHH-HHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 3458999999999999999999999999974 52 1589999999999999999997644
No 8
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=97.93 E-value=1.1e-05 Score=85.37 Aligned_cols=54 Identities=31% Similarity=0.453 Sum_probs=47.0
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHhhhccCCCC----CCCChhhhHHHHHHHHHHHHHH
Q 022288 16 ATRKMQKADREKLRRDRLNEHFTELGNALDPDR----PKNDKATILADTVQLLKDLTSQ 70 (299)
Q Consensus 16 a~Rk~~KAerERrRRdKLNErF~eLrslLvP~~----~K~DKASIL~DAI~ylKdLr~q 70 (299)
..++..+++.||||||++|-.+.||.+| +|.. -|+||-+||-.||..||.+++.
T Consensus 18 r~~Re~~~~~EKrRRdq~N~yI~ELs~M-vp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 18 RKKRENRSEIEKRRRDQMNKYIEELSEM-VPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred hhccccchhHHHHHHHHHHHHHHHHHHh-hhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 3446677789999999999999999998 5644 3999999999999999999985
No 9
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.44 E-value=0.00034 Score=66.41 Aligned_cols=64 Identities=20% Similarity=0.335 Sum_probs=49.9
Q ss_pred ccchhhhhhccchHHHHHHHHHHHHHHHHhhhccCCCC-CCCChhhhHHHHHHHHHHHHHHHHHH
Q 022288 11 VKDCAATRKMQKADREKLRRDRLNEHFTELGNALDPDR-PKNDKATILADTVQLLKDLTSQVEKL 74 (299)
Q Consensus 11 ~~~~~a~Rk~~KAerERrRRdKLNErF~eLrslLvP~~-~K~DKASIL~DAI~ylKdLr~qVq~L 74 (299)
.+.....|++----|||||=.|+||.|.+|..--.++- +..-|+.||-.||+||..|++-++++
T Consensus 111 rks~svDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~ 175 (284)
T KOG3960|consen 111 RKSTSVDRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQ 175 (284)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566655556999999999999999976544544 58899999999999999988755544
No 10
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.20 E-value=0.0003 Score=68.40 Aligned_cols=62 Identities=24% Similarity=0.316 Sum_probs=49.7
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhccCCCC-CCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022288 20 MQKADREKLRRDRLNEHFTELGNALDPDR-PKNDKATILADTVQLLKDLTSQVEKLKTEHAAL 81 (299)
Q Consensus 20 ~~KAerERrRRdKLNErF~eLrslLvP~~-~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L 81 (299)
---++-||||=.-||.-|..||+||+-.. -|..||+||..+.+||.+|..+--+|-..|..|
T Consensus 62 eIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll~qn~el 124 (373)
T KOG0561|consen 62 EIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELLPQNGEL 124 (373)
T ss_pred HhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccccccccchH
Confidence 33456799999999999999999853333 399999999999999999998877666555444
No 11
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.11 E-value=0.00029 Score=75.83 Aligned_cols=66 Identities=26% Similarity=0.382 Sum_probs=60.1
Q ss_pred hhhccchHHHHHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 022288 17 TRKMQKADREKLRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALT 82 (299)
Q Consensus 17 ~Rk~~KAerERrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~ 82 (299)
.||..|+-=|||=|--|||++.+|+.++++...|..|.+.|..||+|+++|+...+.|+.++..+.
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 678888899999999999999999998655557999999999999999999999999998888776
No 12
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=97.06 E-value=0.006 Score=48.96 Aligned_cols=60 Identities=18% Similarity=0.425 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
+..||+-|.=|+-+|++|++.|..|.++++.++..+.+|+.||..|+.|-..-+ .||+++
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq----erLr~L 72 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ----ERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 567888899999999999999999999999999999999999999999987766 666665
No 13
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.99 E-value=0.0074 Score=48.07 Aligned_cols=60 Identities=22% Similarity=0.440 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
+..||+-|.-|+-+|++|++.|..|..|..++......|+.||.+||.|-..-+ .|++++
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQ----erlrsL 72 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQ----ERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 457899999999999999999999999999999999999999999999987776 666654
No 14
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.79 E-value=0.013 Score=45.84 Aligned_cols=51 Identities=31% Similarity=0.479 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022288 61 VQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNI 111 (299)
Q Consensus 61 I~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ 111 (299)
++.+.+|..+|+.+=+.+..|+.++.+|+.+.++|.+++..|+.+..+|+.
T Consensus 3 ~E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 3 LELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666655555555555555555543
No 15
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=96.63 E-value=0.014 Score=52.05 Aligned_cols=64 Identities=23% Similarity=0.457 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 57 LADTVQLLKDLTSQ---VEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 57 L~DAI~ylKdLr~q---Vq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
|.|.|.+|..|... .+.|+.+|..|..++..|..+...|..|+..|+.++.-++..|+.-+..|
T Consensus 82 l~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im 148 (161)
T TIGR02894 82 LQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIM 148 (161)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999974 77888999999999999999999999999999999999999998877665
No 16
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=96.47 E-value=0.0033 Score=56.82 Aligned_cols=59 Identities=22% Similarity=0.308 Sum_probs=47.6
Q ss_pred hhhccchHHHHHHHHHHHHHHHHhhhccCCC---CCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 022288 17 TRKMQKADREKLRRDRLNEHFTELGNALDPD---RPKNDKATILADTVQLLKDLTSQVEKLK 75 (299)
Q Consensus 17 ~Rk~~KAerERrRRdKLNErF~eLrslLvP~---~~K~DKASIL~DAI~ylKdLr~qVq~Lk 75 (299)
.++...+.|||.|=.-+|..|.+||..|+.. ..|..|..+|--||.||+-|..-++.-+
T Consensus 108 ~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~ 169 (228)
T KOG4029|consen 108 AQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQE 169 (228)
T ss_pred hhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccc
Confidence 3444556789999999999999999986443 3499999999999999999987655443
No 17
>PRK11637 AmiB activator; Provisional
Probab=96.39 E-value=0.03 Score=54.66 Aligned_cols=73 Identities=10% Similarity=0.077 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCCccCC
Q 022288 55 TILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMVPWAAMD 127 (299)
Q Consensus 55 SIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw~~~d 127 (299)
.-+.++...|..|..++..+...+..++.++..+..+.++|+.+...++.+++.++.+|.+|++.|+-...++
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~g~~~ 140 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQGEHT 140 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 4466777888888888888888888999999999999999999999999999999999999999997665544
No 18
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.22 E-value=0.057 Score=42.19 Aligned_cols=50 Identities=26% Similarity=0.452 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEI 106 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~ 106 (299)
+..||+-|.-|+.++++|+++|..|.++...|+.|-..|+.|......-+
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777766555555544444444444333333
No 19
>PLN03217 transcription factor ATBS1; Provisional
Probab=96.20 E-value=0.011 Score=48.61 Aligned_cols=58 Identities=24% Similarity=0.409 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHhhhccCCCCC-----CCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 022288 27 KLRRDRLNEHFTELGNALDPDRP-----KNDKATILADTVQLLKDLTSQVEKLKTEHAALTEE 84 (299)
Q Consensus 27 RrRRdKLNErF~eLrslLvP~~~-----K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE 84 (299)
|-=-|.|||.+..|+.+|+..+. |..-+-+|.+|+.||+.|..+|..|.+....|.+-
T Consensus 16 risddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 16 RISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred CCCHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34458899999999998644222 45556699999999999999999999888776653
No 20
>PRK00846 hypothetical protein; Provisional
Probab=96.18 E-value=0.054 Score=43.15 Aligned_cols=68 Identities=19% Similarity=0.179 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCCccCCCccccCCCCC
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMVPWAAMDHSVMMAPPSY 137 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw~~~dps~~~~pp~y 137 (299)
.|..++.+|+..+.-.+.-+++|....-+...+...|+.++..|. .||+.+-+....+|+.-.-||||
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~----~rL~~~~~s~~~~~~dE~PPPHY 77 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL----EDLGKVRSTLFADPADEPPPPHY 77 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhccccCCCCCCCCCcCCC
Confidence 466777777777776666777777777777777777777777776 67777766655567766677777
No 21
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=96.17 E-value=0.065 Score=51.20 Aligned_cols=89 Identities=26% Similarity=0.343 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhH
Q 022288 24 DREKLRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLR 103 (299)
Q Consensus 24 erERrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~Lk 103 (299)
-.||.-|.||..|..+=-+ .-.|-.-..+-=..|++|.++.++|..+|+.|++..+.|-.+-+||+.+...|+
T Consensus 66 ~EEK~~RrKLKNRVAAQta-------RDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~ 138 (292)
T KOG4005|consen 66 WEEKVQRRKLKNRVAAQTA-------RDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLR 138 (292)
T ss_pred HHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3588888899888765432 122333345555678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 022288 104 SEIENLNIQYQQRVRA 119 (299)
Q Consensus 104 sE~e~L~~qlqqrl~~ 119 (299)
.++.+|++|+|..-..
T Consensus 139 ~~l~~~~~~~~~~~~v 154 (292)
T KOG4005|consen 139 QELAELKQQQQHNTRV 154 (292)
T ss_pred HHHHhhHHHHHHhhHH
Confidence 9999999887766443
No 22
>PRK04406 hypothetical protein; Provisional
Probab=95.95 E-value=0.097 Score=41.09 Aligned_cols=68 Identities=16% Similarity=0.243 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCCccCCCccccCCCCC
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMVPWAAMDHSVMMAPPSY 137 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw~~~dps~~~~pp~y 137 (299)
.|..++.+|+..+.-++.-+++|....-+...+...|+.++..|. +|++.+-+-..-+|+.---||||
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~----~rl~~~~~~~~~~~~~e~pPPHY 75 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVV----GKVKNMDSSNLADPAEETPPPHY 75 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhccccCCCCCCCCCccCC
Confidence 577788888887777777778887777777777788888877776 45555533222234444446777
No 23
>PRK02119 hypothetical protein; Provisional
Probab=95.89 E-value=0.078 Score=41.30 Aligned_cols=70 Identities=16% Similarity=0.246 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCCccCCCccccCCCCC
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMVPWAAMDHSVMMAPPSY 137 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw~~~dps~~~~pp~y 137 (299)
+..|.+++.+|+..+.-.+.-+++|....-+.+.+...|+.++..|. +|++.+-+-...++..---||||
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~----~rl~~~~~~~~~~~~~e~~PPHY 73 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMA----NKLKDMQPSNIASQAEETPPPHY 73 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhccccCCCCCCCCCcCCC
Confidence 45677778888877777777777887777777777788888888776 44444422211223333355667
No 24
>PRK02793 phi X174 lysis protein; Provisional
Probab=95.39 E-value=0.19 Score=38.99 Aligned_cols=68 Identities=21% Similarity=0.267 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCCccCCCccccCCCCC
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMVPWAAMDHSVMMAPPSY 137 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw~~~dps~~~~pp~y 137 (299)
.+.+++.+|+..+.-.+.-+++|....-+.+.+...|..++..|.. |++.+-+-..-++..---||||
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~----rl~~~~~~~~~~~~~e~~PPHY 72 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTE----KLKASQPSNIASQAEETPPPHY 72 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhccccCCCCCCCCCcCCC
Confidence 3566777777777766777777777777777777777777777764 4444422221233333456677
No 25
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=95.35 E-value=0.1 Score=53.35 Aligned_cols=59 Identities=32% Similarity=0.403 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---------------HHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQ---------------EKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~---------------EkNELRdEns~LksE~e~L~~qlqq 115 (299)
|..-|.-+|+|+.+++.|..+|+.|.+|++.|++ +..+|..|...|+.++.+|+.++++
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~ 134 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQ 134 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888999999999999999999999988866 4566777777777777666555443
No 26
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.34 E-value=0.11 Score=49.67 Aligned_cols=72 Identities=18% Similarity=0.250 Sum_probs=43.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCCc
Q 022288 53 KATILADTVQLLKDLTSQVEKLKTEHAALTEES-------RELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMVPWA 124 (299)
Q Consensus 53 KASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~-------~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw~ 124 (299)
+-+.|.++-.-+++++.+|+.|...++.+..++ +.+..|..+|..+...|+..|...+.-|..|+|+|+--.
T Consensus 36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG 114 (265)
T COG3883 36 QDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNG 114 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344566666666666666666665555554444 444445555555555555555566666778899986443
No 27
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=95.11 E-value=0.14 Score=41.19 Aligned_cols=55 Identities=20% Similarity=0.311 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 61 VQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 61 I~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
.+++.+|.++|+..-+.+.-|+.|+++|+.+.+.|..|+..+++..+.|+.+.++
T Consensus 3 ~EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~q 57 (79)
T PRK15422 3 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNH 57 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4678899999999888898899999999998888998888877777777666554
No 28
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=95.09 E-value=0.12 Score=42.96 Aligned_cols=46 Identities=33% Similarity=0.441 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNI 111 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ 111 (299)
+|-.++..|++.+..|.+++.+|+....+|-+||+.|+-|.+.|..
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555566666666666666666666666666666653
No 29
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=95.06 E-value=0.085 Score=39.06 Aligned_cols=37 Identities=32% Similarity=0.563 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREE 98 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdE 98 (299)
.||.+|+.++..|+.+|..|..++..|..+...|+.+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555555555555555555554444444444433
No 30
>smart00338 BRLZ basic region leucin zipper.
Probab=95.03 E-value=0.079 Score=39.23 Aligned_cols=39 Identities=28% Similarity=0.430 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 022288 61 VQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEK 99 (299)
Q Consensus 61 I~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEn 99 (299)
-.|+.+|+.+++.|+.+|..|..++..|..|...|++++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 358888888888888888888887777777777776554
No 31
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=94.97 E-value=0.12 Score=39.40 Aligned_cols=50 Identities=20% Similarity=0.325 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 67 LTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 67 Lr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
|.+++.+|+..+.-++.-+++|....-+...+...|+.++..|. .||+.+
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~----~rl~~~ 51 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLR----ERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHh
Confidence 55666777776666666677777666666777777777777776 444444
No 32
>PRK00736 hypothetical protein; Provisional
Probab=94.96 E-value=0.25 Score=37.93 Aligned_cols=65 Identities=15% Similarity=0.276 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCCccCCCccccCCCCC
Q 022288 68 TSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMVPWAAMDHSVMMAPPSY 137 (299)
Q Consensus 68 r~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw~~~dps~~~~pp~y 137 (299)
..++.+|+..+.-.+.-+++|....-+...+...|+.++..|. .|++.+-+.. .++..---||||
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~----~rl~~~~~~~-~~~~~~~~PPHY 68 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALT----ERFLSLEEQA-APDVPVTKPPHW 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcccc-CCCCCCCCcCCC
Confidence 3455555555555555555665555555666666666666665 4455443332 223333456677
No 33
>PRK00295 hypothetical protein; Provisional
Probab=94.86 E-value=0.3 Score=37.55 Aligned_cols=65 Identities=20% Similarity=0.272 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCCccCC-CccccCCCCC
Q 022288 67 LTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMVPWAAMD-HSVMMAPPSY 137 (299)
Q Consensus 67 Lr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw~~~d-ps~~~~pp~y 137 (299)
|.+++.+|+..+.-.+.-+++|....-+...+...|+.++..|.. |++.+- .++. +..---||||
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~----rl~~~~--~~~~~~~~e~~PPHY 68 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIK----RQEEMV--GQFGSFEEEAPPPHY 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhh--ccCCCCCCCCCcCCC
Confidence 345566666666666666666666666666666777777777763 444432 1222 3333456677
No 34
>PRK04325 hypothetical protein; Provisional
Probab=94.58 E-value=0.43 Score=37.22 Aligned_cols=70 Identities=20% Similarity=0.229 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCCccCCCc-cccCCCCC
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMVPWAAMDHS-VMMAPPSY 137 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw~~~dps-~~~~pp~y 137 (299)
+..+.+++.+|+..+.-.+.-+++|....-+...+...|+.++..|. .||+.+-+.++=+.+ .---||||
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~----~rl~~~~~~~~~~~~~~~e~PPHY 74 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLY----QQMRDANPDAAEPYSLRDEIPPHY 74 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcccccCCCCCCcCCCCCC
Confidence 34566777777777777777777777777777777777777777776 445554333211112 23346777
No 35
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.58 E-value=0.21 Score=45.71 Aligned_cols=78 Identities=14% Similarity=0.126 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 022288 28 LRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIE 107 (299)
Q Consensus 28 rRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e 107 (299)
.|=.++...+.+|++-| +.|-.+.-....+|+.+++.++..+..|.++...|+.|..+++.|+..|+++++
T Consensus 93 ~rlp~le~el~~l~~~l---------~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 93 TRVPDLENQVKTLTDKL---------NNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33355667777776543 112233345555566666666666666666666666666666666666666666
Q ss_pred HHHHHHH
Q 022288 108 NLNIQYQ 114 (299)
Q Consensus 108 ~L~~qlq 114 (299)
.++...+
T Consensus 164 ~~~~~~~ 170 (206)
T PRK10884 164 DKQRTII 170 (206)
T ss_pred HHHHHHH
Confidence 6654433
No 36
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=94.54 E-value=0.042 Score=56.78 Aligned_cols=51 Identities=33% Similarity=0.473 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCC---CCCCCChhhhHHHHHHHHHHHHHHHHH
Q 022288 23 ADREKLRRDRLNEHFTELGNALDP---DRPKNDKATILADTVQLLKDLTSQVEK 73 (299)
Q Consensus 23 AerERrRRdKLNErF~eLrslLvP---~~~K~DKASIL~DAI~ylKdLr~qVq~ 73 (299)
+.|||.|=.-|||.|.||+.|--- ......|-.||-.|+.+|-.|++||++
T Consensus 531 NARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 531 NARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred hhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 345555556799999999987311 223567899999999999999999874
No 37
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.49 E-value=0.52 Score=44.95 Aligned_cols=82 Identities=28% Similarity=0.336 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 022288 27 KLRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEI 106 (299)
Q Consensus 27 RrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~ 106 (299)
+.|...|.+.+..|+.+ .......|+ .=|..+-.-|.++..+++.++.+...|+.+...++.+.+++..++..+..+|
T Consensus 183 ~~~~~~L~~e~~~Lk~~-~~e~~~~D~-~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI 260 (325)
T PF08317_consen 183 RERKAELEEELENLKQL-VEEIESCDQ-EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEI 260 (325)
T ss_pred HHHHHHHHHHHHHHHHH-HhhhhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888886 333333443 3345555555555555555555555555555555555555555555555555
Q ss_pred HHHH
Q 022288 107 ENLN 110 (299)
Q Consensus 107 e~L~ 110 (299)
..++
T Consensus 261 ~e~~ 264 (325)
T PF08317_consen 261 AEAE 264 (325)
T ss_pred HHHH
Confidence 5444
No 38
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.47 E-value=0.27 Score=41.76 Aligned_cols=52 Identities=42% Similarity=0.567 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 59 DTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 59 DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
-.+..|..|..++..++.++..|+.++..|..+++++++|...|-.+.+.++
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~ 64 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELR 64 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888888888888888888888877777777777766665553
No 39
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.21 E-value=1.4 Score=37.26 Aligned_cols=79 Identities=25% Similarity=0.384 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhH
Q 022288 24 DREKLRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLR 103 (299)
Q Consensus 24 erERrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~Lk 103 (299)
.++...|+.|++.+..|++= +...-.-+..|+.+++.++.++..++++...|..+...+..-+..++
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d-------------~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~k 114 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSD-------------IERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEK 114 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888899988888764 33334455666666666666666555555555555444444444444
Q ss_pred HHHHHHHHHHHH
Q 022288 104 SEIENLNIQYQQ 115 (299)
Q Consensus 104 sE~e~L~~qlqq 115 (299)
.|+.+|...+++
T Consensus 115 ee~~klk~~~~~ 126 (151)
T PF11559_consen 115 EELQKLKNQLQQ 126 (151)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 40
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.10 E-value=0.35 Score=46.24 Aligned_cols=58 Identities=17% Similarity=0.318 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlq 114 (299)
+...=.-|++|+.+...++.+++.|..++.++..+.+++++|+..++.++.+|+.++.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~ 90 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIA 90 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556678999999999999999999999999999999999999999999998887664
No 41
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.05 E-value=0.52 Score=43.10 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 87 ELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 87 eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
.+..+.++|+.||..|+.++..+++++
T Consensus 129 ~~~~~~~~L~~~n~~L~~~l~~~~~~~ 155 (206)
T PRK10884 129 QSDSVINGLKEENQKLKNQLIVAQKKV 155 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555554443
No 42
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=93.98 E-value=0.31 Score=40.99 Aligned_cols=46 Identities=26% Similarity=0.388 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
++|-.++..|+..+..|..++.+|+....+|-+||..|+-|-+.|.
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr 49 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLR 49 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666666666666666666666665
No 43
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=93.87 E-value=0.2 Score=43.13 Aligned_cols=51 Identities=35% Similarity=0.508 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHhhhHHHHHHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQEK--NDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~Ek--NELRdEns~LksE~e~L~~qlq 114 (299)
|.+|++++..|+.++..|..+...|.... .+|+.+...|+.++..|+..|+
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888887775 6688888888888888874444
No 44
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=93.50 E-value=0.44 Score=50.60 Aligned_cols=75 Identities=23% Similarity=0.228 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCCccCCCcc
Q 022288 56 ILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMVPWAAMDHSV 130 (299)
Q Consensus 56 IL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw~~~dps~ 130 (299)
|+.-.-..|.+|+.+-++|..+++++...+++|+++.-.-+-|..+||.+|+.-|.|++.-+...-|-..++-++
T Consensus 87 I~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~LP~sl 161 (907)
T KOG2264|consen 87 ILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKLFLPFSL 161 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCceeecccc
Confidence 344444456667777777777788888888888888887788889999999999988888877776665544443
No 45
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.43 E-value=0.97 Score=43.65 Aligned_cols=82 Identities=26% Similarity=0.318 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 022288 27 KLRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEI 106 (299)
Q Consensus 27 RrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~ 106 (299)
+.|.+.|+..+..|+.+ .-.... =..+.|..+-.-|+++..++...+.....++.+...++...++...++..+..+|
T Consensus 178 ~~~~~~L~~e~~~L~~~-~~e~~~-~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I 255 (312)
T smart00787 178 RDRKDALEEELRQLKQL-EDELED-CDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI 255 (312)
T ss_pred HHHHHHHHHHHHHHHHh-HHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888886 222222 2356666666666666666665555555555555555555555555555555555
Q ss_pred HHHH
Q 022288 107 ENLN 110 (299)
Q Consensus 107 e~L~ 110 (299)
..++
T Consensus 256 ~~ae 259 (312)
T smart00787 256 AEAE 259 (312)
T ss_pred HHHH
Confidence 5444
No 46
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=93.35 E-value=0.12 Score=46.23 Aligned_cols=46 Identities=33% Similarity=0.499 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
|.|++.+...--+.|.-|++|+ .||..|+.|.++||.|+..|.+++
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777788888887 678888989999999888887776
No 47
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.10 E-value=0.25 Score=35.51 Aligned_cols=41 Identities=29% Similarity=0.432 Sum_probs=24.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 74 LKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 74 Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlq 114 (299)
|+.+.+.|...-+.|+.+...|..||..|++++..|...++
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455555555556666666666666666666666654443
No 48
>PRK11637 AmiB activator; Provisional
Probab=93.03 E-value=0.73 Score=45.11 Aligned_cols=59 Identities=22% Similarity=0.234 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
..++++..+++.|..++..+..+++.+..+.+++..+...|..+|..++.++..+-..+
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555566666666666666666666666666665554444
No 49
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=92.77 E-value=0.084 Score=56.23 Aligned_cols=50 Identities=34% Similarity=0.424 Sum_probs=40.1
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHhhhccCC--CC-CCCChhhhHHHHHHHHH
Q 022288 16 ATRKMQKADREKLRRDRLNEHFTELGNALDP--DR-PKNDKATILADTVQLLK 65 (299)
Q Consensus 16 a~Rk~~KAerERrRRdKLNErF~eLrslLvP--~~-~K~DKASIL~DAI~ylK 65 (299)
+-||-.-..+-|-||.|=|+-|++|..+|+- .+ +..|||+|+-=||.||+
T Consensus 44 ~~rkEkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 44 ELRKEKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred HHHhhhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence 3445545568899999999999999998632 11 48999999999999986
No 50
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=92.68 E-value=0.7 Score=44.19 Aligned_cols=56 Identities=23% Similarity=0.298 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRV 117 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl 117 (299)
+..-+|++..+++.++++.|..+..+|..|.++++++..+|+.++.+|+..+..+.
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 33445556666777788888888888888888888888888888888876655443
No 51
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=92.65 E-value=0.91 Score=35.28 Aligned_cols=44 Identities=34% Similarity=0.400 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIE 107 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e 107 (299)
|+.|..+|+.|-.....|..|...|+.+...++.|...|....+
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne 45 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNE 45 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444444445555555544444444444444433
No 52
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=92.62 E-value=0.72 Score=38.46 Aligned_cols=50 Identities=32% Similarity=0.415 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNI 111 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ 111 (299)
..|.+|..++..|-+++..|...+.+|-.|-.+|+-||..|+..+..++.
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677778888888888888888888888888888888888888887763
No 53
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=92.57 E-value=1.3 Score=41.36 Aligned_cols=34 Identities=32% Similarity=0.469 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDL 95 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNEL 95 (299)
.+|.+++.+.+.|..|-..+.++++...+++|.|
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~l 65 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTL 65 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544444444443333333333
No 54
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.41 E-value=0.99 Score=36.24 Aligned_cols=55 Identities=22% Similarity=0.319 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 61 VQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 61 I~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
.+++..|.+.|+.--+.+.-|+.|+++|+.+.|.|..|-+.+....+.|+.+.+|
T Consensus 3 lEv~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneq 57 (79)
T COG3074 3 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQ 57 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888887777777788888888888787877777777777777655544
No 55
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=92.37 E-value=0.92 Score=38.22 Aligned_cols=49 Identities=35% Similarity=0.439 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
.-|.+|..++..|-.++..|...+.+|-.|-.+|+-||..|+..+.+++
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666666666666666666666676666667777777777776653
No 56
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=91.93 E-value=1.2 Score=34.58 Aligned_cols=55 Identities=24% Similarity=0.420 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
.-|-+|-...++|+.+|..|.++...+..|...|.+.|..-++.++.+= .||++|
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI----~RLk~l 61 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMI----TRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhhhhh
Confidence 3466777788888888988999999999999999888888888888775 666655
No 57
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.85 E-value=1.1 Score=42.73 Aligned_cols=34 Identities=26% Similarity=0.290 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 80 ALTEESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 80 ~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
.+..++.+|+.++.+++.+...+..++..++.++
T Consensus 227 ~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI 260 (325)
T PF08317_consen 227 AKKKELAELQEELEELEEKIEELEEQKQELLAEI 260 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444333
No 58
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=91.84 E-value=1.7 Score=34.97 Aligned_cols=46 Identities=26% Similarity=0.393 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
-.+|..++..|+..+..|-..++.++.|...|+.||.-|..=|.+|
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888888888888888888888888888888877
No 59
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=91.80 E-value=1.3 Score=32.72 Aligned_cols=35 Identities=31% Similarity=0.478 Sum_probs=18.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022288 78 HAALTEESRELTQEKNDLREEKLSLRSEIENLNIQ 112 (299)
Q Consensus 78 n~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~q 112 (299)
+..|+.++..|..+...|+.++..|+.++..|..+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555555555555555555555555555543
No 60
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.70 E-value=0.98 Score=43.38 Aligned_cols=7 Identities=14% Similarity=0.268 Sum_probs=1.9
Q ss_pred HHHcCCC
Q 022288 117 VRAMVPW 123 (299)
Q Consensus 117 l~~~~pw 123 (299)
|+..-.|
T Consensus 132 L~ktNv~ 138 (314)
T PF04111_consen 132 LRKTNVY 138 (314)
T ss_dssp HHT--TT
T ss_pred HHhcCch
Confidence 3333333
No 61
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=91.67 E-value=1.5 Score=45.25 Aligned_cols=41 Identities=32% Similarity=0.593 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCCccCCCcc
Q 022288 79 AALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMVPWAAMDHSV 130 (299)
Q Consensus 79 ~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw~~~dps~ 130 (299)
..+.+++.++..++++|++|...|+.+++. .-||..+|...
T Consensus 96 ~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~-----------l~~~~~ld~~l 136 (646)
T PRK05771 96 EKIEKEIKELEEEISELENEIKELEQEIER-----------LEPWGNFDLDL 136 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhhhhcCCCCH
Confidence 344444444444444444444444444444 44999877765
No 62
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=91.61 E-value=2.1 Score=36.39 Aligned_cols=75 Identities=15% Similarity=0.297 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHH--------HHHHHHHhh
Q 022288 31 DRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHA-ALTEESRELTQEK--------NDLREEKLS 101 (299)
Q Consensus 31 dKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~-~L~eE~~eLk~Ek--------NELRdEns~ 101 (299)
+++|+...+|-. .+++. ..+|-+|+.+|..+++.-..+.+ .++..++++..+. .+|+++...
T Consensus 24 ek~~klvDelVk-----kGeln----~eEak~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~ 94 (108)
T COG3937 24 EKVQKLVDELVK-----KGELN----AEEAKRFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDA 94 (108)
T ss_pred HHHHHHHHHHHH-----cCCCC----HHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHH
Confidence 444555554433 24555 67899999999999886555443 2444555554433 578888888
Q ss_pred hHHHHHHHHHHHH
Q 022288 102 LRSEIENLNIQYQ 114 (299)
Q Consensus 102 LksE~e~L~~qlq 114 (299)
|+.++..|+++++
T Consensus 95 Lerqv~~Lenk~k 107 (108)
T COG3937 95 LERQVADLENKLK 107 (108)
T ss_pred HHHHHHHHHHHhc
Confidence 8888888887765
No 63
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=91.61 E-value=5.6 Score=41.10 Aligned_cols=55 Identities=11% Similarity=0.129 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 59 DTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 59 DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
+...-|.+-+.++.+|+++++.|+.|.+.|.+...++..+...|++|+..|+.|+
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3345566666677778888887877777777777778777788888888887665
No 64
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=91.22 E-value=13 Score=39.15 Aligned_cols=44 Identities=30% Similarity=0.408 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCCcc
Q 022288 80 ALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMVPWAA 125 (299)
Q Consensus 80 ~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw~~ 125 (299)
.|..-++-+..||.+|++|++.|+..|++|+..|..-... =|..
T Consensus 421 Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~--~~~~ 464 (546)
T PF07888_consen 421 ELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADE--KWKE 464 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhc
Confidence 4455556677789999999999999999998555543322 4764
No 65
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.20 E-value=1.7 Score=38.58 Aligned_cols=54 Identities=22% Similarity=0.364 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
+..--.-|.+|+.++..|+..+..|.+++++...-...|+||...|.-+..-|+
T Consensus 111 ~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e 164 (194)
T PF08614_consen 111 LSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLE 164 (194)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556666666666666666666666555555555555555555444443
No 66
>COG5570 Uncharacterized small protein [Function unknown]
Probab=91.13 E-value=0.66 Score=35.31 Aligned_cols=45 Identities=33% Similarity=0.520 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHH-------HHHHHHHHHhhhHHHHHHHHHH
Q 022288 68 TSQVEKLKTEHAALTEESRELTQ-------EKNDLREEKLSLRSEIENLNIQ 112 (299)
Q Consensus 68 r~qVq~Lk~en~~L~eE~~eLk~-------EkNELRdEns~LksE~e~L~~q 112 (299)
...+.+|+.....|++|+++-.. ...+|+..+.+||.+|++|..|
T Consensus 4 eshl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 4 ESHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45566677777777777766543 5678888999999999999754
No 67
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=91.08 E-value=2.5 Score=37.13 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 90 QEKNDLREEKLSLRSEIENLNIQYQQRVRA 119 (299)
Q Consensus 90 ~EkNELRdEns~LksE~e~L~~qlqqrl~~ 119 (299)
.+.++|+.++..|+.|+++|++++++.+..
T Consensus 73 ~~~~~lr~~~e~L~~eie~l~~~L~~ei~~ 102 (177)
T PF07798_consen 73 SEFAELRSENEKLQREIEKLRQELREEINK 102 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666555443
No 68
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.08 E-value=2.5 Score=41.46 Aligned_cols=45 Identities=18% Similarity=0.281 Sum_probs=34.5
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 50 KNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKND 94 (299)
Q Consensus 50 K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNE 94 (299)
+..=+.+|.++-+..+.|..++..|+..+..++.+++.|+...+.
T Consensus 67 ~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~ 111 (319)
T PF09789_consen 67 NKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLAR 111 (319)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHh
Confidence 445567889999999999999888888887777777777664433
No 69
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=91.03 E-value=1.9 Score=33.86 Aligned_cols=52 Identities=29% Similarity=0.427 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--------HHHHHHhhhHHHHHHHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQEKN--------DLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~EkN--------ELRdEns~LksE~e~L~~qlqq 115 (299)
|++...++.+|+.+|=.|.-++..|....+ ++..+|..|+.++..|+.+++.
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~ 61 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQE 61 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777666555554444322 2334444444444444444443
No 70
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=90.87 E-value=2.2 Score=33.06 Aligned_cols=54 Identities=22% Similarity=0.321 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQE-------KNDLREEKLSLRSEIENLNIQYQQRV 117 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~E-------kNELRdEns~LksE~e~L~~qlqqrl 117 (299)
+..|+.++..+...+...+.+++.|+.| ..+...++..|+.+++.|+.+++.+.
T Consensus 7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 7 IATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555555555555555555555555 45667788888888888888876653
No 71
>PHA02562 46 endonuclease subunit; Provisional
Probab=90.75 E-value=2.5 Score=41.76 Aligned_cols=76 Identities=21% Similarity=0.226 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 022288 28 LRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIE 107 (299)
Q Consensus 28 rRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e 107 (299)
.++..+.+++.+|+..+ . .+-+-|.+.++..+.|+.++++|+.....+.++...|..+.++++.+...+..++.
T Consensus 330 ~~~~~~~~~i~el~~~i-----~-~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~ 403 (562)
T PHA02562 330 DEFNEQSKKLLELKNKI-----S-TNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKY 403 (562)
T ss_pred HHHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677776653 1 11122777889999999999999998888888888888888888888887777766
Q ss_pred HH
Q 022288 108 NL 109 (299)
Q Consensus 108 ~L 109 (299)
.+
T Consensus 404 ~~ 405 (562)
T PHA02562 404 HR 405 (562)
T ss_pred HH
Confidence 54
No 72
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.74 E-value=2.9 Score=37.59 Aligned_cols=31 Identities=19% Similarity=0.391 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQEKNDLR 96 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~EkNELR 96 (299)
.++.+++.|+..++.+..++...+.+..+++
T Consensus 67 ~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~ 97 (302)
T PF10186_consen 67 ELRERLERLRERIERLRKRIEQKRERLEELR 97 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 73
>PRK10869 recombination and repair protein; Provisional
Probab=90.54 E-value=2.7 Score=43.15 Aligned_cols=92 Identities=14% Similarity=0.165 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHhhhHH
Q 022288 28 LRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKT---EHAALTEESRELTQEKNDLREEKLSLRS 104 (299)
Q Consensus 28 rRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~---en~~L~eE~~eLk~EkNELRdEns~Lks 104 (299)
.|=+.+++|+..|..+- + |-+ .=+.+.+.|..+++.+++.|+. ....|+.++..++.+..++..+.+..+.
T Consensus 296 ~~l~~ie~Rl~~l~~L~---r-Kyg--~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~ 369 (553)
T PRK10869 296 NRLAELEQRLSKQISLA---R-KHH--VSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQ 369 (553)
T ss_pred HHHHHHHHHHHHHHHHH---H-HhC--CCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999871 1 111 1489999999999999998874 5677888888888888888877776666
Q ss_pred H-HHHHHHHHHHHHHHcCCCccCCCc
Q 022288 105 E-IENLNIQYQQRVRAMVPWAAMDHS 129 (299)
Q Consensus 105 E-~e~L~~qlqqrl~~~~pw~~~dps 129 (299)
+ ..+|+..++..|+.+ +|+..
T Consensus 370 ~aA~~l~~~v~~~L~~L----~m~~a 391 (553)
T PRK10869 370 RYAKELAQLITESMHEL----SMPHG 391 (553)
T ss_pred HHHHHHHHHHHHHHHHc----CCCCc
Confidence 5 678999999999998 66555
No 74
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.51 E-value=3.3 Score=33.06 Aligned_cols=69 Identities=17% Similarity=0.276 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCCccCCCccccCCCCC
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMVPWAAMDHSVMMAPPSY 137 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw~~~dps~~~~pp~y 137 (299)
..|.+++.+|+...+.=+.-+.+|..-.-|.+-....+..++..|- .|+..+-+.+.=+|++---||||
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~----~kl~~~~~~~~~~~~~etpPPHY 72 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLT----EKLKDLQPSAIASPAEETPPPHY 72 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhcccccCCCcccCCCCCC
Confidence 4577778888777665555566776666666666666666666665 66677666655455555555666
No 75
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.45 E-value=2.5 Score=38.24 Aligned_cols=62 Identities=23% Similarity=0.341 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 55 TILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQR 116 (299)
Q Consensus 55 SIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqr 116 (299)
.|..+=+.+|+.|+++|..++..-......+.++.+|...|.+....+..++..|+.++.+.
T Consensus 20 dIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y 81 (201)
T PF13851_consen 20 DITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY 81 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 36667788899999999888876666666666666666666666666666666666665543
No 76
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=90.26 E-value=2.3 Score=39.75 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlq 114 (299)
.++.-.-++.|++++++.+.+.+.++++...|+..-.++.+|-.+|..|-.+|++|++
T Consensus 153 ~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 153 NDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 4455556677777777777777788888888888888888888888888888887765
No 77
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=90.15 E-value=2 Score=41.71 Aligned_cols=89 Identities=26% Similarity=0.325 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhhhccCCCCC-CCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 022288 28 LRRDRLNEHFTELGNALDPDRP-KNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEI 106 (299)
Q Consensus 28 rRRdKLNErF~eLrslLvP~~~-K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~ 106 (299)
--|+.|.+-=...+.+|+-+.+ -++|.+++.. |.-|+..+++|++.+..|+.++++...+..-++.....|+.++
T Consensus 81 ~lk~~l~evEekyrkAMv~naQLDNek~~l~yq----vd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~ 156 (302)
T PF09738_consen 81 DLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQ----VDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREEL 156 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777776777777788776 7889888764 4556778888888888888888888888877888889999999
Q ss_pred HHHHHHHHHHHHHc
Q 022288 107 ENLNIQYQQRVRAM 120 (299)
Q Consensus 107 e~L~~qlqqrl~~~ 120 (299)
..|+.+|.+|=..+
T Consensus 157 ~~Lre~L~~rdeli 170 (302)
T PF09738_consen 157 DELREQLKQRDELI 170 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887666
No 78
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=89.93 E-value=1.3 Score=32.82 Aligned_cols=37 Identities=32% Similarity=0.494 Sum_probs=17.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 74 LKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 74 Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
++.+...|+.++..++.+..+|+.+...|+.+.+.++
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie 58 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIE 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3333334444444444444444444555544555554
No 79
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.83 E-value=3 Score=37.75 Aligned_cols=76 Identities=26% Similarity=0.399 Sum_probs=52.5
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----------------------HhhhHHHHHH
Q 022288 51 NDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREE----------------------KLSLRSEIEN 108 (299)
Q Consensus 51 ~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdE----------------------ns~LksE~e~ 108 (299)
.||+ .|..+-..++.+..++..|+-+++.|......|..|+++|... ...|...++.
T Consensus 83 kdK~-~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~ 161 (201)
T PF13851_consen 83 KDKQ-SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEK 161 (201)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3565 4677777788888888888888888888888888887777632 2334445566
Q ss_pred HHHHHHHHHHHcCCCccCCCccc
Q 022288 109 LNIQYQQRVRAMVPWAAMDHSVM 131 (299)
Q Consensus 109 L~~qlqqrl~~~~pw~~~dps~~ 131 (299)
-+.||..=++++ ++||..+
T Consensus 162 keaqL~evl~~~----nldp~~~ 180 (201)
T PF13851_consen 162 KEAQLNEVLAAA----NLDPAAL 180 (201)
T ss_pred HHHHHHHHHHHc----CCCHHHH
Confidence 666666666666 6787743
No 80
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=89.77 E-value=2.1 Score=39.46 Aligned_cols=41 Identities=24% Similarity=0.304 Sum_probs=25.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 76 TEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQR 116 (299)
Q Consensus 76 ~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqr 116 (299)
+.+..++.|...|..+...|++||..|..+.+.|+.++++-
T Consensus 88 aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 88 AQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 33344455555566666777777777777777776655543
No 81
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=89.70 E-value=4.9 Score=34.77 Aligned_cols=48 Identities=40% Similarity=0.563 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
+.++++.++++.++.....+.++..++..+..+++++...++.+..++
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 170 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERL 170 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555665555666666555544444444444444444444
No 82
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=89.61 E-value=1.9 Score=37.81 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022288 82 TEESRELTQEKNDLREEKLSLRSEIENLNI 111 (299)
Q Consensus 82 ~eE~~eLk~EkNELRdEns~LksE~e~L~~ 111 (299)
.+|++.|+.|..+...|...||.|.++|+.
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444443
No 83
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=89.58 E-value=5.3 Score=30.14 Aligned_cols=73 Identities=15% Similarity=0.332 Sum_probs=43.7
Q ss_pred HHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022288 32 RLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNI 111 (299)
Q Consensus 32 KLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ 111 (299)
.|+..+..+... ...+|-..|.++=..|.+..+-+..++-|...+.. .+++.+.......++++.+|+.
T Consensus 7 ~i~~~l~~~~~~-----~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~------s~r~~~~~kl~~yr~~l~~lk~ 75 (79)
T PF05008_consen 7 EIKSKLERIKNL-----SGEQRKSLIREIERDLDEAEELLKQMELEVRSLPP------SERNQYKSKLRSYRSELKKLKK 75 (79)
T ss_dssp HHHHHHHHGGGS------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-H------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444432 12455555666656666555555555555544432 6677788888888888888887
Q ss_pred HHHH
Q 022288 112 QYQQ 115 (299)
Q Consensus 112 qlqq 115 (299)
+|++
T Consensus 76 ~l~~ 79 (79)
T PF05008_consen 76 ELKK 79 (79)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7763
No 84
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=89.52 E-value=6.7 Score=33.17 Aligned_cols=79 Identities=15% Similarity=0.256 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhhccCCCCC-CCC--hhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 022288 31 DRLNEHFTELGNALDPDRP-KND--KATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIE 107 (299)
Q Consensus 31 dKLNErF~eLrslLvP~~~-K~D--KASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e 107 (299)
.-||..+..++=+ ..... ..+ -..=....|..|.+|-.+.++-....+.|...+..+..+...|.....+|+.+++
T Consensus 5 ~yiN~~L~s~G~~-~~~~~~~~~~~~~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~ 83 (151)
T PF11559_consen 5 EYINQQLLSRGYP-SDGLLFDSAEESEDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLE 83 (151)
T ss_pred HHHHHHHHHCCCC-CCCccCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3588888888832 22211 111 1222344555555555554444444444444444444444444444444444443
Q ss_pred HHH
Q 022288 108 NLN 110 (299)
Q Consensus 108 ~L~ 110 (299)
.++
T Consensus 84 ~~e 86 (151)
T PF11559_consen 84 ELE 86 (151)
T ss_pred HHH
Confidence 333
No 85
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=89.38 E-value=3.7 Score=40.03 Aligned_cols=70 Identities=23% Similarity=0.438 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 022288 28 LRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIE 107 (299)
Q Consensus 28 rRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e 107 (299)
.+|+.||....++++- -.+...-+++|+++++.|...-..+.+++.+|+.+++++....+.|..++.
T Consensus 27 ekR~El~~~~~~~~ek-------------Rdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~ 93 (294)
T COG1340 27 EKRDELRKEASELAEK-------------RDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYR 93 (294)
T ss_pred HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666653 335556677777777777777777777777777777766666666665555
Q ss_pred HHH
Q 022288 108 NLN 110 (299)
Q Consensus 108 ~L~ 110 (299)
.|-
T Consensus 94 ~l~ 96 (294)
T COG1340 94 ELK 96 (294)
T ss_pred HHH
Confidence 443
No 86
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=89.27 E-value=0.34 Score=49.62 Aligned_cols=47 Identities=32% Similarity=0.376 Sum_probs=38.4
Q ss_pred hccchHHHHHHHHHHHHHHHHhhhccCCCC---CCCChhhhHHHHHHHHHH
Q 022288 19 KMQKADREKLRRDRLNEHFTELGNALDPDR---PKNDKATILADTVQLLKD 66 (299)
Q Consensus 19 k~~KAerERrRRdKLNErF~eLrslLvP~~---~K~DKASIL~DAI~ylKd 66 (299)
+++| -+-|.||++-|--|.+|.++|+--+ +..||++|+-=|..|||-
T Consensus 3 ekSK-naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 3 EKSK-NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred ccch-hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 3455 3679999999999999999874432 479999999999999973
No 87
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.87 E-value=1.3 Score=31.94 Aligned_cols=34 Identities=29% Similarity=0.342 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 81 LTEESRELTQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 81 L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlq 114 (299)
|+.+-+.|+...+.|+.++..|+.|.++|..|++
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQ 36 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555443
No 88
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=88.84 E-value=1.9 Score=35.36 Aligned_cols=52 Identities=21% Similarity=0.348 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAAL--TEESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L--~eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
+-+.++..++..++.+++.| ..+++.|..+..+++.+...|..++.-+..+.
T Consensus 42 ~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 42 ERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33455577777777777776 66777777777777777777777777665443
No 89
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=88.81 E-value=1.9 Score=39.71 Aligned_cols=14 Identities=36% Similarity=0.408 Sum_probs=5.1
Q ss_pred HHhhhHHHHHHHHH
Q 022288 77 EHAALTEESRELTQ 90 (299)
Q Consensus 77 en~~L~eE~~eLk~ 90 (299)
+|+.|++|+.+|+.
T Consensus 77 en~~L~~e~~~l~~ 90 (276)
T PRK13922 77 ENEELKKELLELES 90 (276)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 90
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=88.66 E-value=4.1 Score=41.44 Aligned_cols=29 Identities=34% Similarity=0.365 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 91 EKNDLREEKLSLRSEIENLNIQYQQRVRA 119 (299)
Q Consensus 91 EkNELRdEns~LksE~e~L~~qlqqrl~~ 119 (299)
||..||.|+..|..|++..+.|++|.--.
T Consensus 350 EKaaLrkerd~L~keLeekkreleql~~q 378 (442)
T PF06637_consen 350 EKAALRKERDSLAKELEEKKRELEQLKMQ 378 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777776666654433
No 91
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=88.63 E-value=5.7 Score=40.45 Aligned_cols=57 Identities=23% Similarity=0.328 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
|.+.-+-...|+.++.+|+.++..+..++.+...+..+++..+..+...+..|+.|-
T Consensus 54 i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 54 IREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 334444455566666666666666666666666677777777777777777777766
No 92
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=88.44 E-value=4 Score=35.71 Aligned_cols=44 Identities=45% Similarity=0.482 Sum_probs=31.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 73 KLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQR 116 (299)
Q Consensus 73 ~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqr 116 (299)
.-+.++.+|.+++..|+.+.+.|..|...|+.+++.|..++|.-
T Consensus 49 n~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~ 92 (140)
T PF10473_consen 49 NSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKK 92 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566777777777777778878888888887777766543
No 93
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=88.41 E-value=3.9 Score=36.87 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 56 ILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQR 116 (299)
Q Consensus 56 IL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqr 116 (299)
=|.+++..|.+=+.+.+.|..-|.-|.+..+..+..-..|.++...|..+.++|..++..+
T Consensus 61 dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~k 121 (182)
T PF15035_consen 61 DLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQK 121 (182)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777888888888888888888888888887777777778888888777777776666544
No 94
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.24 E-value=6.2 Score=34.98 Aligned_cols=66 Identities=20% Similarity=0.240 Sum_probs=45.1
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 52 DKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRV 117 (299)
Q Consensus 52 DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl 117 (299)
.+..-|.+.-..+..|+.++..|+.++.....-+..|+-|.-.|+-+.+.+...+.+|+.+.++-|
T Consensus 113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 113 EKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELV 178 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777777777777777777766666666777766677777777777776666655544
No 95
>PRK09039 hypothetical protein; Validated
Probab=88.22 E-value=3.9 Score=39.79 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 55 TILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 55 SIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
++.+++-..|..|+.||+.|+..+..|+.+++.++.+..+.+.....|+.+++.+
T Consensus 130 ~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 130 QVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777778888888888887777777777766666665555555555443
No 96
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=88.09 E-value=3.5 Score=31.41 Aligned_cols=40 Identities=20% Similarity=0.394 Sum_probs=19.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 71 VEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 71 Vq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
+.+|..++.+|..+++.|..+.+.||.+....+.|..+-+
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN 44 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARAN 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444455555555444
No 97
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=87.93 E-value=1.9 Score=37.15 Aligned_cols=60 Identities=28% Similarity=0.456 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHH---HHHHHHc
Q 022288 61 VQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEK--LSLRSEIENLNIQY---QQRVRAM 120 (299)
Q Consensus 61 I~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEn--s~LksE~e~L~~ql---qqrl~~~ 120 (299)
.+-+.+|..++..|++++..|..++..|+.|.+.|..+- ..|..+|..|+.++ +.||..+
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777788888888888888888888888776654 46777777777654 4455543
No 98
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=87.92 E-value=5.3 Score=35.08 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 90 QEKNDLREEKLSLRSEIENLNIQYQQR 116 (299)
Q Consensus 90 ~EkNELRdEns~LksE~e~L~~qlqqr 116 (299)
.||.++|+|...+...+..+++.+...
T Consensus 113 ~eK~~~r~e~~~~~~ki~e~~~ki~~e 139 (177)
T PF07798_consen 113 LEKGRIREEQAKQELKIQELNNKIDTE 139 (177)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666555555555554444433
No 99
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=87.89 E-value=3.3 Score=33.00 Aligned_cols=56 Identities=25% Similarity=0.490 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhhhHHH----------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 65 KDLTSQVEKLKTEHAALTEE----------SRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE----------~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
+.|+.+++.|+.+...+..+ ..+|..+..+++++...|..+...++.+++..+...
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~i 104 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSI 104 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444445555444444433 345555666666666666666666666665554433
No 100
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=87.89 E-value=6.3 Score=33.55 Aligned_cols=46 Identities=28% Similarity=0.361 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 022288 54 ATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEK 99 (299)
Q Consensus 54 ASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEn 99 (299)
..++..--.-|++|..++..|+.++..|..+-+.++.|.-.|..++
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666667766666666666555555555544444444
No 101
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=87.87 E-value=2.8 Score=39.41 Aligned_cols=55 Identities=33% Similarity=0.447 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
.+|-=+..|=++.+..|..|++|.+.+.+++..||.|...|++|-.+|= .+++-+
T Consensus 79 siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLY----EKiRyl 133 (248)
T PF08172_consen 79 SILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLY----EKIRYL 133 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 4444556666677777777777777777777777777777777777665 556555
No 102
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=87.87 E-value=1.8 Score=33.65 Aligned_cols=67 Identities=24% Similarity=0.368 Sum_probs=51.4
Q ss_pred HHHHHHHHhhhccCCCCC---CCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 022288 32 RLNEHFTELGNALDPDRP---KNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEK 99 (299)
Q Consensus 32 KLNErF~eLrslLvP~~~---K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEn 99 (299)
.+..-..+|..+ ++++. ..+++=|+.+.-.++..|..+++.++.++..|....+++..+.++++...
T Consensus 30 ~~~~~~~eL~~l-~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 30 ELELTLEELEKL-DDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHTS-STT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888875 77642 66788888888888888888888888888888888888877777766544
No 103
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=87.77 E-value=2.2 Score=39.42 Aligned_cols=49 Identities=31% Similarity=0.404 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlq 114 (299)
+|-..|+.|+..|..|..++..|+....-+.+.++.|..+++.|..|++
T Consensus 5 dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~ 53 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLK 53 (193)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555556666666666665566666666666666665554
No 104
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=87.71 E-value=4.1 Score=31.04 Aligned_cols=48 Identities=19% Similarity=0.363 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
-|.+|-.+|+.|...+..|..++..|+.+....++|-.+--..|+++-
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 467899999999999999999999999999999999888777777664
No 105
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=87.68 E-value=2.7 Score=36.06 Aligned_cols=51 Identities=33% Similarity=0.417 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRA 119 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~ 119 (299)
|++-.++..|++.+..|-.++..|++...+|-+||..|+-|.++|. .||..
T Consensus 4 keiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR----~RL~~ 54 (114)
T COG4467 4 KEIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLR----ERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH----HHhCC
Confidence 3455667777777778888888888888888888888888888886 66655
No 106
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=87.64 E-value=5 Score=44.98 Aligned_cols=87 Identities=26% Similarity=0.355 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHH
Q 022288 26 EKLRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSE 105 (299)
Q Consensus 26 ERrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE 105 (299)
-|.+.+.++.++..+.+-+ ..+=.+-+.+.-.-++.|..+|++|+..+..|.++.++++.+.-+.++|+...+.+
T Consensus 370 ~k~~~d~l~k~I~~~~~~~-----~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~ 444 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQT-----NNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGE 444 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3566777788888777753 12223347778888999999999999999999999999998888888888888888
Q ss_pred HHHHHHHHHHHH
Q 022288 106 IENLNIQYQQRV 117 (299)
Q Consensus 106 ~e~L~~qlqqrl 117 (299)
|..|...+++.-
T Consensus 445 i~~l~k~i~~~~ 456 (1074)
T KOG0250|consen 445 ILQLRKKIENIS 456 (1074)
T ss_pred HHHHHHHHHHHH
Confidence 887777666544
No 107
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=87.63 E-value=4.1 Score=42.03 Aligned_cols=51 Identities=12% Similarity=0.239 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIE 107 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e 107 (299)
|.+.=.-.++|+.+++.|+.+++.+.....++..+.++|.+|+..|+.+++
T Consensus 71 LteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444443334444444444444444444444443
No 108
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=87.38 E-value=4.2 Score=39.40 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlq 114 (299)
+.|++++.++..++.....++.+++.+..++.........++..++.+++
T Consensus 207 ~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~ 256 (312)
T smart00787 207 DRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIA 256 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444444444444444444444444443
No 109
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=87.21 E-value=1.8 Score=35.73 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQEKNDLR 96 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELR 96 (299)
+.+|+.+++.++.+++.|+.+...|+.|...|+
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455566666655555555555444444444443
No 110
>smart00338 BRLZ basic region leucin zipper.
Probab=87.18 E-value=4 Score=30.16 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022288 79 AALTEESRELTQEKNDLREEKLSLRSEIENLNIQ 112 (299)
Q Consensus 79 ~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~q 112 (299)
..|+.++..|..+..+|+.+...|..++..|..+
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433
No 111
>PF14282 FlxA: FlxA-like protein
Probab=87.15 E-value=4 Score=33.54 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 61 VQLLKDLTSQVEKLKTEHAALTEE----SRELTQEKNDLREEKLSLRSEIENLNIQYQQRV 117 (299)
Q Consensus 61 I~ylKdLr~qVq~Lk~en~~L~eE----~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl 117 (299)
-..|+.|+.++..|.+++..|... .+.-......|..+...|.++|..|+.+..+..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888877777662 123333444566666667777766665544433
No 112
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=87.06 E-value=6.5 Score=36.36 Aligned_cols=62 Identities=29% Similarity=0.487 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHhhhHHHHHHHHH----HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLK-------TEHAALTEESRELTQ----EKNDLREEKLSLRSEIENLNIQYQQRVR 118 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk-------~en~~L~eE~~eLk~----EkNELRdEns~LksE~e~L~~qlqqrl~ 118 (299)
+..+-.-+++++.+++.|. ..+..|...+.+|.. +...+......|..++..|..++++++.
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ 283 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLR 283 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Confidence 4444444444444444444 444445555544432 2333444455555666666555555543
No 113
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=86.91 E-value=4.7 Score=31.31 Aligned_cols=51 Identities=24% Similarity=0.316 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 60 TVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 60 AI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
+.+-+.-.......|..+.+.....+...-.+.++|++|+..|+.|++.+.
T Consensus 17 ~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 17 LTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333444444455555555566677777778888888887776654
No 114
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=86.83 E-value=5.8 Score=30.91 Aligned_cols=55 Identities=18% Similarity=0.317 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 60 TVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 60 AI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlq 114 (299)
-=+.|.+|+.+-+.|....-.+..-|+.|+....++..+...|+..++.++.++.
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~ 64 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELE 64 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356778888888887777777777777777777777777777777766665543
No 115
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=86.72 E-value=2.8 Score=37.78 Aligned_cols=51 Identities=24% Similarity=0.345 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 60 TVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 60 AI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
.+...+.|+.+.++|+.++..|+.+++.|..|...|..+...++.+-..|=
T Consensus 95 ~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 95 TNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLI 145 (161)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666666666666666666666666666665553
No 116
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=86.66 E-value=5.8 Score=41.73 Aligned_cols=63 Identities=22% Similarity=0.298 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRA 119 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~ 119 (299)
....-.-+.+|+.++++|..+.+.+..+++.++.+..++.+|....+.+..+|+.++.-+-+.
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~ 385 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKT 385 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678899999999999999999999999999999999999999999999999887755444
No 117
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=86.66 E-value=14 Score=32.18 Aligned_cols=86 Identities=19% Similarity=0.307 Sum_probs=66.5
Q ss_pred HHHHHHHHhhhccCCCCCCCChhhhHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 32 RLNEHFTELGNALDPDRPKNDKATILADTVQLL-KDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 32 KLNErF~eLrslLvP~~~K~DKASIL~DAI~yl-KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
.|++.|..|-.++.-+. ...-.+.|+++-| .++...+...-.-+..++.+++.++.|...|++.+.++++.+++|.
T Consensus 5 el~~~~~~l~~~~e~~~---~d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk 81 (162)
T PF05565_consen 5 ELTDEYLELLELLEEGD---LDEEAIADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLK 81 (162)
T ss_pred HHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888754332 3345677777773 3466667777777788999999999999999999999999999999
Q ss_pred HHHHHHHHHc
Q 022288 111 IQYQQRVRAM 120 (299)
Q Consensus 111 ~qlqqrl~~~ 120 (299)
+-|...|...
T Consensus 82 ~yL~~~m~~~ 91 (162)
T PF05565_consen 82 EYLLDAMEAA 91 (162)
T ss_pred HHHHHHHHHc
Confidence 8888777664
No 118
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=86.59 E-value=4.9 Score=32.07 Aligned_cols=58 Identities=28% Similarity=0.432 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH----------HHHHHHHhhhHHHHHHHHHHHHH
Q 022288 58 ADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEK----------NDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 58 ~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~Ek----------NELRdEns~LksE~e~L~~qlqq 115 (299)
...++.|.+|-.+...|..+.+.|..+.+.+..+. .+|..+-..++.++..|+.++..
T Consensus 25 ~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~ 92 (108)
T PF02403_consen 25 EEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKE 92 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666677777777777777888877777653 34555667777777777766544
No 119
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=86.47 E-value=9.7 Score=31.74 Aligned_cols=68 Identities=19% Similarity=0.184 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCChhhh-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 24 DREKLRRDRLNEHFTELGNALDPDRPKNDKATI-LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREE 98 (299)
Q Consensus 24 erERrRRdKLNErF~eLrslLvP~~~K~DKASI-L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdE 98 (299)
+..++||..|......|...+ -..++ +...+..+..|..+++.++++++.|..+...|+.|.+.|+++
T Consensus 18 ~~~~~~~~~l~~~l~~~l~~f-------~~~~~~g~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 18 ERRVRRRRILTLVLLALLALF-------QYLAWFGKNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 455666666665555555442 11111 222344455566666666666666666666666666666555
No 120
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=86.40 E-value=5.8 Score=32.59 Aligned_cols=51 Identities=24% Similarity=0.389 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESREL--TQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eL--k~EkNELRdEns~LksE~e~L~~qlq 114 (299)
+..|.+++...+.....++.+++.| +.+.++|+-+...++.++..|+.+++
T Consensus 37 ~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~ 89 (106)
T PF10805_consen 37 IEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQ 89 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4455566666677777777777777 77777777777788888777775554
No 121
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=86.14 E-value=4.8 Score=33.84 Aligned_cols=57 Identities=26% Similarity=0.293 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 59 DTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 59 DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
+....+..|..+...|.+.|-.++.++..++.+..++.++...|+.+-..++.+++.
T Consensus 31 ~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~ 87 (150)
T PF07200_consen 31 ELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDE 87 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555666665566666666666666666666666666666654443
No 122
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=86.04 E-value=3.2 Score=30.73 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQEKNDL 95 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~EkNEL 95 (299)
+.+++.+++.|+.+++.+..+++.|+.+...|
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555555555555555
No 123
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=85.92 E-value=6.4 Score=38.48 Aligned_cols=66 Identities=21% Similarity=0.288 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Q 022288 23 ADREKLRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSL 102 (299)
Q Consensus 23 AerERrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~L 102 (299)
...++.||.+.+... -|.||=+.-|++-+.|..+.+. |..+-.+||+.-..|
T Consensus 223 ~~~~~~~rkr~qnk~---------------------AAtRYRqKkRae~E~l~ge~~~-------Le~rN~~LK~qa~~l 274 (294)
T KOG4571|consen 223 TPEKKLRRKRQQNKA---------------------AATRYRQKKRAEKEALLGELEG-------LEKRNEELKDQASEL 274 (294)
T ss_pred CchHHHHHHHHHhHH---------------------HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 345667777676655 5777766666555555444444 444444445555555
Q ss_pred HHHHHHHHHHHHHH
Q 022288 103 RSEIENLNIQYQQR 116 (299)
Q Consensus 103 ksE~e~L~~qlqqr 116 (299)
..||..|.+-+..+
T Consensus 275 erEI~ylKqli~e~ 288 (294)
T KOG4571|consen 275 EREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555433333
No 124
>PHA03011 hypothetical protein; Provisional
Probab=85.79 E-value=6 Score=33.89 Aligned_cols=78 Identities=23% Similarity=0.288 Sum_probs=56.6
Q ss_pred HHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 34 NEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 34 NErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
||-+..|+- +|..---=|-+=...-|+.+.+|+.+-.+|-+|..-+..+++.+.+-..+--+|.--|++|+++|..++
T Consensus 38 dEYLanL~f--~P~qi~dfk~GD~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~ni 115 (120)
T PHA03011 38 DEYLANLIF--EPEQIFDFKEGDINAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENI 115 (120)
T ss_pred HHHHHhhhc--CHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 344455552 453321122223566788899999999999999999999999998888888888888999999987543
No 125
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=85.79 E-value=5.7 Score=37.58 Aligned_cols=38 Identities=26% Similarity=0.337 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSL 102 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~L 102 (299)
..|..+++.++....+|..++..|..+..+|+++...|
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l 129 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDL 129 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433334333333333333333333333
No 126
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=85.69 E-value=10 Score=34.13 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=9.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHH
Q 022288 96 REEKLSLRSEIENLNIQYQQRV 117 (299)
Q Consensus 96 RdEns~LksE~e~L~~qlqqrl 117 (299)
.++....+..+..|+.++..+-
T Consensus 125 ~~~~~~~~~~l~~l~~~l~~~r 146 (302)
T PF10186_consen 125 QNELEERKQRLSQLQSQLARRR 146 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555555443
No 127
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=85.65 E-value=5.5 Score=36.11 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 60 TVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLR 96 (299)
Q Consensus 60 AI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELR 96 (299)
..+..+.|..++.+-+.++..+.+++.+|....-+|+
T Consensus 108 ~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~ 144 (190)
T PF05266_consen 108 LLEERKKLEKKIEEKEAELKELESEIKELEMKILELQ 144 (190)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3344444444444333333333333333333333333
No 128
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=85.58 E-value=3.2 Score=34.18 Aligned_cols=51 Identities=18% Similarity=0.220 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCCc
Q 022288 70 QVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMVPWA 124 (299)
Q Consensus 70 qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw~ 124 (299)
+..+++.+.+.++.++..|+++...|+.|...|+.+.+-++ ++.+....+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiE----e~AR~~Lg~v 78 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIE----ERARNELGMV 78 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHH----HHHHHHcCCC
Confidence 45556666666666666666666666666666665555555 4455544443
No 129
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=85.53 E-value=6 Score=35.93 Aligned_cols=57 Identities=19% Similarity=0.234 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
|..|+.++.-.+.-...|+..-+.|-.|.-++.++...|+.+++.+-......+...
T Consensus 12 L~~lk~~L~~a~rg~~lLk~KR~~Li~e~~~~~~~~~~lr~~~~~~~~~a~~~l~~a 68 (201)
T PRK02195 12 LKKQKKQLKMLERYLPTLKLKKAQLQAEVRRAKAEAAELEQEYQKLRQAIEAWISLF 68 (201)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788888888888888888888999999999999999988888776666655443
No 130
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=85.52 E-value=7 Score=38.54 Aligned_cols=51 Identities=16% Similarity=0.243 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 022288 56 ILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEI 106 (299)
Q Consensus 56 IL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~ 106 (299)
+|+-++..+.+|..++..|..+|+.|..+.+.+..+..++-.+|..+..++
T Consensus 131 l~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L 181 (342)
T PF06632_consen 131 LFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDL 181 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666777778888888888887777777777776666655555554443
No 131
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=85.42 E-value=8.4 Score=33.32 Aligned_cols=35 Identities=29% Similarity=0.429 Sum_probs=13.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 76 TEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 76 ~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
+....+.+..+.+..|..+|+.+...++.+...+.
T Consensus 130 ~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~ 164 (191)
T PF04156_consen 130 ERLDSLDESIKELEKEIRELQKELQDSREEVQELR 164 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444433333334444443
No 132
>PHA02047 phage lambda Rz1-like protein
Probab=85.35 E-value=5.5 Score=33.59 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCCcc
Q 022288 61 VQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMVPWAA 125 (299)
Q Consensus 61 I~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw~~ 125 (299)
-+..++|..+++.++..+..++..++.|.+. -+.-.+++..-|....+|+.
T Consensus 33 h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~k--------------ae~~t~Ei~~aL~~n~~WaD 83 (101)
T PHA02047 33 HEEAKRQTARLEALEVRYATLQRHVQAVEAR--------------TNTQRQEVDRALDQNRPWAD 83 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhCCCccc
Confidence 3444445555555544444444444444333 34444556677778889985
No 133
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=85.32 E-value=2.2 Score=30.75 Aligned_cols=28 Identities=43% Similarity=0.597 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 83 EESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 83 eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
....+|..+..+|..+|..|+.++..|+
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555555555555555554
No 134
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=85.18 E-value=4.7 Score=42.97 Aligned_cols=46 Identities=28% Similarity=0.370 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSL 102 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~L 102 (299)
+..-.+.++.|..++++|+.+|..|..++.+|+.+..+|+.+..++
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~ 462 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERF 462 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666777777777777777777766666666665554443
No 135
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=85.14 E-value=2.3 Score=42.01 Aligned_cols=56 Identities=18% Similarity=0.370 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 55 TILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 55 SIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
++-+-+--..+.|..+..+|+.++..|..+.++++.+.+.++.|...|+.++++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 8 AVASSTTHTERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344445566677777777777777777777777777777777777777777664
No 136
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=85.05 E-value=11 Score=31.78 Aligned_cols=53 Identities=25% Similarity=0.403 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH----HHHHHHhhhHHHHHHHH
Q 022288 58 ADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKN----DLREEKLSLRSEIENLN 110 (299)
Q Consensus 58 ~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkN----ELRdEns~LksE~e~L~ 110 (299)
+++|.-|..|+.++..++..+..|..+.+..+.+.. .+..++..|..++..++
T Consensus 55 a~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~ 111 (132)
T PF07926_consen 55 AEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELE 111 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 566888888888888888877777776655444322 23333444444444443
No 137
>PF14282 FlxA: FlxA-like protein
Probab=85.00 E-value=3.5 Score=33.86 Aligned_cols=50 Identities=28% Similarity=0.416 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH---H-HHHHHhhhHHHHHHHHHHHHHHH
Q 022288 68 TSQVEKLKTEHAALTEESRELTQEKN---D-LREEKLSLRSEIENLNIQYQQRV 117 (299)
Q Consensus 68 r~qVq~Lk~en~~L~eE~~eLk~EkN---E-LRdEns~LksE~e~L~~qlqqrl 117 (299)
-.+|+.|+..+..|.+++..|....+ | -+.....|..+|.-|+.||.+..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666655222 1 22233456666666666655443
No 138
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.95 E-value=5 Score=40.16 Aligned_cols=38 Identities=26% Similarity=0.432 Sum_probs=15.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 022288 70 QVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIE 107 (299)
Q Consensus 70 qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e 107 (299)
+++.+..+.+.|....++|+..+++|+.++..|+.+..
T Consensus 226 eme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~ 263 (365)
T KOG2391|consen 226 EMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQ 263 (365)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33344444444433334444444444444444443333
No 139
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=84.91 E-value=5.5 Score=38.86 Aligned_cols=54 Identities=22% Similarity=0.424 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQR 116 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqr 116 (299)
-+..++++-..|......+.+.+++|+.+++++-++...|+.....++..++..
T Consensus 35 ~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL 88 (294)
T COG1340 35 EASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQEL 88 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555666666666777777777777777777766666553
No 140
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=84.89 E-value=3.1 Score=39.41 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=13.7
Q ss_pred HHHHHhhhHHHHHHHHHHHH----HHHHHHhhhHH
Q 022288 74 LKTEHAALTEESRELTQEKN----DLREEKLSLRS 104 (299)
Q Consensus 74 Lk~en~~L~eE~~eLk~EkN----ELRdEns~Lks 104 (299)
|++||+.|.+++.+|+.+.+ +|+.||.+|+.
T Consensus 71 l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~ 105 (283)
T TIGR00219 71 LEYENYKLRQELLKKNQQLEILTQNLKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555444433322 24444444443
No 141
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=84.82 E-value=13 Score=32.24 Aligned_cols=62 Identities=27% Similarity=0.414 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRA 119 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~ 119 (299)
.+.++..|..+++....+..++..+..++.....+...+|++...++.+.+++..++.. |+.
T Consensus 72 ~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~-l~~ 133 (177)
T PF13870_consen 72 IGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKK-LRQ 133 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 67888888899999999999999999999999999999999999999999999877765 443
No 142
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=84.71 E-value=10 Score=34.79 Aligned_cols=58 Identities=22% Similarity=0.268 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCCc
Q 022288 67 LTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMVPWA 124 (299)
Q Consensus 67 Lr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw~ 124 (299)
|+..++.|+..+..++.++..|..++.++..-...|.--+.++-..|+++++.-.||.
T Consensus 68 L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~ 125 (251)
T PF11932_consen 68 LEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFL 125 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 3333334444444444444444444444444444444444555556666666555654
No 143
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=84.68 E-value=3.8 Score=42.22 Aligned_cols=49 Identities=35% Similarity=0.492 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhhhH---------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 65 KDLTSQVEKLKTEHAALT---------------EESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~---------------eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
..|..+.+.|++||+.|+ .+-.+|..|...|++|.+.|+..+..|+.||
T Consensus 76 ~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 76 AKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555666665553 3446777888888888888888777776444
No 144
>PRK09039 hypothetical protein; Validated
Probab=84.60 E-value=7.5 Score=37.82 Aligned_cols=58 Identities=19% Similarity=0.192 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRA 119 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~ 119 (299)
....+...+|..|+.+++.|...+..|..+.++++.+....+.+++.|+..|+.-++.
T Consensus 130 ~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 130 QVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555567777788888888888888888888777788888888888777776644
No 145
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=84.34 E-value=13 Score=28.87 Aligned_cols=48 Identities=23% Similarity=0.411 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 022288 61 VQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIEN 108 (299)
Q Consensus 61 I~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~ 108 (299)
+-.++.|...+.++....+.++++++.+..|.+++-.+-+.+..++..
T Consensus 18 ~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~ 65 (90)
T PF06103_consen 18 IKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNE 65 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555444444443
No 146
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=84.28 E-value=5.3 Score=34.50 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 59 DTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREE 98 (299)
Q Consensus 59 DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdE 98 (299)
.|+.-+-.|..++..|+.++..+..+|..|......|..+
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~e 50 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEE 50 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555544444444444433333333
No 147
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=84.20 E-value=10 Score=30.55 Aligned_cols=62 Identities=13% Similarity=0.242 Sum_probs=36.3
Q ss_pred HHHHHHhhhccCCCCC---CCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 34 NEHFTELGNALDPDRP---KNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLR 96 (299)
Q Consensus 34 NErF~eLrslLvP~~~---K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELR 96 (299)
+.-..+|..+ +++.. ..+.+-|..+.-+.+..|..+++.|+.+...|...++++..+.++|+
T Consensus 33 ~~v~~EL~~l-~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk 97 (105)
T cd00632 33 KKALEELEKL-ADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQ 97 (105)
T ss_pred HHHHHHHHcC-CCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566643 55543 45666666666666666666666666666666665555555555544
No 148
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=83.90 E-value=0.92 Score=42.59 Aligned_cols=56 Identities=21% Similarity=0.338 Sum_probs=43.4
Q ss_pred hhhhhhccchHHHHHHHHHHHHHHHHhhhccCCC--CCCCChhhhHHHHHHHHHHHHH
Q 022288 14 CAATRKMQKADREKLRRDRLNEHFTELGNALDPD--RPKNDKATILADTVQLLKDLTS 69 (299)
Q Consensus 14 ~~a~Rk~~KAerERrRRdKLNErF~eLrslLvP~--~~K~DKASIL~DAI~ylKdLr~ 69 (299)
....|+..=+.|||.|=-.||+-|..||.+|+.. .+|+.|.-.|.-|-.||..|.+
T Consensus 68 ~~~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 68 ALTLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred hhhhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence 3456666667899999999999999999985423 3599999999777777766553
No 149
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=83.87 E-value=12 Score=38.33 Aligned_cols=88 Identities=17% Similarity=0.290 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHhhhH
Q 022288 27 KLRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKT---EHAALTEESRELTQEKNDLREEKLSLR 103 (299)
Q Consensus 27 RrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~---en~~L~eE~~eLk~EkNELRdEns~Lk 103 (299)
-.|-+.|++++..|..+. -|- ..-+.+-++|+.+++.+++.|+. ..+.|++++..++.+..++-.+....+
T Consensus 300 p~~L~ele~RL~~l~~Lk----rKy--g~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R 373 (563)
T TIGR00634 300 PERLNEIEERLAQIKRLK----RKY--GASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIR 373 (563)
T ss_pred HHHHHHHHHHHHHHHHHH----HHh--CCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888761 111 12478889999999999988774 455667777777777766666666553
Q ss_pred HH-HHHHHHHHHHHHHHc
Q 022288 104 SE-IENLNIQYQQRVRAM 120 (299)
Q Consensus 104 sE-~e~L~~qlqqrl~~~ 120 (299)
.+ ...|+..+...|+.+
T Consensus 374 ~~~a~~l~~~v~~~l~~L 391 (563)
T TIGR00634 374 RKAAERLAKRVEQELKAL 391 (563)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 33 356777777777775
No 150
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.75 E-value=5 Score=45.01 Aligned_cols=88 Identities=16% Similarity=0.140 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 022288 27 KLRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEI 106 (299)
Q Consensus 27 RrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~ 106 (299)
...++++++.+..|..-+ ... + ++-.=|..++.-..+|..++.+|..++..+.+++.++..+...|..+...+..++
T Consensus 849 ~~e~e~~~~eI~~Lq~ki-~el-~-~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1311)
T TIGR00606 849 RKLIQDQQEQIQHLKSKT-NEL-K-SEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEK 925 (1311)
T ss_pred HHHHHHHHHHHHHHHHHH-HHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 444555566666664432 111 1 2222244577888888888888888888888888888777777777777777777
Q ss_pred HHHHHHHHHHH
Q 022288 107 ENLNIQYQQRV 117 (299)
Q Consensus 107 e~L~~qlqqrl 117 (299)
+++..+.+..+
T Consensus 926 ~~~~~~~~~~~ 936 (1311)
T TIGR00606 926 EELISSKETSN 936 (1311)
T ss_pred HHHHHHHHHHH
Confidence 66655544443
No 151
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=83.57 E-value=5.2 Score=41.94 Aligned_cols=55 Identities=25% Similarity=0.367 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELTQE-------KNDLREEKLSLRSEIENLNIQYQQRV 117 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk~E-------kNELRdEns~LksE~e~L~~qlqqrl 117 (299)
.++.|..++..|+.+|..|..++..++.+ +.++....+.|+.++.-+..+..+.+
T Consensus 163 r~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI 224 (546)
T KOG0977|consen 163 RIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEI 224 (546)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence 34445555555555555555555544432 23333334445555544443333333
No 152
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=83.57 E-value=11 Score=34.26 Aligned_cols=47 Identities=26% Similarity=0.383 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQ 112 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~q 112 (299)
+|..++.+|+..+..|+.+...+..++.+.-.|+.+|+++.+.|+.+
T Consensus 128 ~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~ 174 (190)
T PF05266_consen 128 ELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEE 174 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444445555555555555433
No 153
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=83.54 E-value=11 Score=38.03 Aligned_cols=63 Identities=14% Similarity=0.217 Sum_probs=41.0
Q ss_pred ChhhhHHHHHHHHHHHHHH---------------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 52 DKATILADTVQLLKDLTSQ---------------VEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 52 DKASIL~DAI~ylKdLr~q---------------Vq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlq 114 (299)
++...+..-+.+|..+... +.++.+....+.+++.++..++.+|..+...|+.++.+|+.+|.
T Consensus 92 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 92 DRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666667777777777632 34455555666666677777777777777777777777765553
No 154
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=83.47 E-value=6 Score=39.79 Aligned_cols=54 Identities=22% Similarity=0.321 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 022288 55 TILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIEN 108 (299)
Q Consensus 55 SIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~ 108 (299)
+|+..+-.....|++-+..++++|..|+...+++.+|.+|..+|.+.|-.|+..
T Consensus 120 ~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 120 EVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 356666667788888899999999999999999999999999999988776653
No 155
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=83.44 E-value=3.7 Score=30.76 Aligned_cols=45 Identities=29% Similarity=0.335 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
.|++=..+|+.+-+.-.-+....+.+..+|+.||..|+++++.++
T Consensus 5 Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 5 RLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555544444567778889999999999999998875
No 156
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=83.36 E-value=12 Score=34.54 Aligned_cols=32 Identities=31% Similarity=0.371 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022288 80 ALTEESRELTQEKNDLREEKLSLRSEIENLNI 111 (299)
Q Consensus 80 ~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ 111 (299)
.+.+|+..++...+.|+.+...|++.+..|+.
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~ 244 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLRAKNASLER 244 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccccchhhhhh
Confidence 34444444444444444444444444444433
No 157
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=83.35 E-value=14 Score=33.15 Aligned_cols=27 Identities=26% Similarity=0.545 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQE 91 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~E 91 (299)
.+|..++..|+.++..|..++.+|+..
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~ 149 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNK 149 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555444443
No 158
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=83.20 E-value=5.2 Score=37.45 Aligned_cols=26 Identities=8% Similarity=0.161 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHH
Q 022288 82 TEESRELTQEKNDLREEKLSLRSEIE 107 (299)
Q Consensus 82 ~eE~~eLk~EkNELRdEns~LksE~e 107 (299)
+..++.|++|..+||..+..+.-+++
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~ 85 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLN 85 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33333333333333333333333333
No 159
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=83.03 E-value=13 Score=30.60 Aligned_cols=50 Identities=20% Similarity=0.330 Sum_probs=31.7
Q ss_pred HHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 022288 69 SQVEKLKTEHA-ALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVR 118 (299)
Q Consensus 69 ~qVq~Lk~en~-~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~ 118 (299)
..|..|+...+ ..+..++.|..+++.|.+|+..|+.+++.-..+-+.-|+
T Consensus 34 ~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ 84 (87)
T PF12709_consen 34 TKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQELLK 84 (87)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556665443 356667777777777777777777777666655555443
No 160
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=82.92 E-value=15 Score=35.98 Aligned_cols=39 Identities=26% Similarity=0.256 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH-cCCCccCCCc
Q 022288 91 EKNDLREEKLSLRSEIENLNIQYQQRVRA-MVPWAAMDHS 129 (299)
Q Consensus 91 EkNELRdEns~LksE~e~L~~qlqqrl~~-~~pw~~~dps 129 (299)
||..|-++..+||.|...|.++|+-|-+. -.|-..+|.+
T Consensus 158 Eke~llesvqRLkdEardlrqelavr~kq~E~pR~~~Pss 197 (333)
T KOG1853|consen 158 EKEVLLESVQRLKDEARDLRQELAVRTKQTERPRIVEPSS 197 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCccc
Confidence 34446667778888888888888887766 3566555444
No 161
>PRK11415 hypothetical protein; Provisional
Probab=82.48 E-value=4.8 Score=31.35 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 58 ADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKND-LREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 58 ~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNE-LRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
.|.|..|+.=-.+..+|.++...|..+|..+.....- --.+...||.++..|..++.+.|+..
T Consensus 6 ~d~I~~Lk~~D~~F~~L~~~h~~Ld~~I~~lE~~~~~~~d~~i~~LKk~KL~LKDeI~~~L~~~ 69 (74)
T PRK11415 6 RDLISRLKNENPRFMSLFDKHNKLDHEIARKEGSDGRGYNAEVVRMKKQKLQLKDEMLKILQQE 69 (74)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 3556666665566677777777777777666554221 13455667777777777777777654
No 162
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.38 E-value=6.3 Score=43.45 Aligned_cols=59 Identities=29% Similarity=0.388 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 56 ILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 56 IL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlq 114 (299)
|..+=-+.|++|..+++.|++.+.+|+-|.++|..+..+.-.+.++|+.+.+.|++||.
T Consensus 658 ~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 658 IQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444556666666777777777777777777777777777777788888888887765
No 163
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=82.19 E-value=5.8 Score=38.31 Aligned_cols=51 Identities=22% Similarity=0.337 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
.+-++..+|.+|.++|..|+.|.+.|+..-..|-.+|..|..+++.|+.+|
T Consensus 91 Rm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l 141 (292)
T KOG4005|consen 91 RMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQEL 141 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 445566666666677777777766666555556667777777777665333
No 164
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=82.06 E-value=4.8 Score=34.37 Aligned_cols=51 Identities=29% Similarity=0.330 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 59 DTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 59 DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
|.-+.-.+|-.+|-+|+...+.|...++.++.|--.||.||+.|-.=|++|
T Consensus 53 d~~EEKaRlItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 53 DVEEEKARLITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 333445556666777777777777777888777777888888888777777
No 165
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=81.93 E-value=18 Score=27.76 Aligned_cols=54 Identities=20% Similarity=0.382 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
|..=|+--..|.+++.+.+..|-.+....++-.....+|..+...|+.+++.++
T Consensus 6 L~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 6 LEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455567777778888888887777777777777766677777777777776654
No 166
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=81.88 E-value=2.4 Score=34.02 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=23.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 92 KNDLREEKLSLRSEIENLNIQYQQRVRA 119 (299)
Q Consensus 92 kNELRdEns~LksE~e~L~~qlqqrl~~ 119 (299)
.++|++||.+|+.+|.+|+.+||+.-+.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3678889999999999999888886665
No 167
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=81.82 E-value=5.7 Score=37.43 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=55.3
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 51 NDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 51 ~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
.+-.+||.-.+.-=-+.+.++.+|++++..+..++..|+.|.+.|+.+|..|=..+--|+
T Consensus 75 ~~~~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 75 GGDSSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366789999999889999999999999999999999999999999999999998888775
No 168
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=81.73 E-value=8.9 Score=36.39 Aligned_cols=24 Identities=21% Similarity=0.043 Sum_probs=16.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhh
Q 022288 78 HAALTEESRELTQEKNDLREEKLS 101 (299)
Q Consensus 78 n~~L~eE~~eLk~EkNELRdEns~ 101 (299)
...|.+|++.|+.|..+|+.+...
T Consensus 68 ~~~l~~EN~~Lr~e~~~l~~~~~~ 91 (283)
T TIGR00219 68 VNNLEYENYKLRQELLKKNQQLEI 91 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888887777555544
No 169
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=81.71 E-value=22 Score=31.66 Aligned_cols=61 Identities=20% Similarity=0.308 Sum_probs=43.3
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022288 51 NDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNI 111 (299)
Q Consensus 51 ~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ 111 (299)
.+.-.+--.|+....++..++..|+.....+...+..|+....+|+.....++.+...|..
T Consensus 80 ~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~a 140 (221)
T PF04012_consen 80 AGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKA 140 (221)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556688888888888888888888777777777777666666666666666665543
No 170
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=81.66 E-value=3 Score=37.47 Aligned_cols=54 Identities=26% Similarity=0.419 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH------HHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 61 VQLLKDLTSQVEKLKTEHAALTEESRELTQ------EKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 61 I~ylKdLr~qVq~Lk~en~~L~eE~~eLk~------EkNELRdEns~LksE~e~L~~qlq 114 (299)
-.-+..|+.+++.++.....|..++...+. |+.++-.+...|+.++..|+.+|+
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666555555443 333444455555555555555555
No 171
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=81.62 E-value=13 Score=34.83 Aligned_cols=16 Identities=19% Similarity=0.607 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 022288 24 DREKLRRDRLNEHFTE 39 (299)
Q Consensus 24 erERrRRdKLNErF~e 39 (299)
...++||..|-+.+.+
T Consensus 145 ~~~~~rR~~i~e~I~~ 160 (254)
T PF15458_consen 145 EQKRRRREEIEEAIND 160 (254)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5667788888777776
No 172
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=81.38 E-value=9 Score=41.19 Aligned_cols=64 Identities=19% Similarity=0.302 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 56 ILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRA 119 (299)
Q Consensus 56 IL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~ 119 (299)
||-|-.+.+.....++.+|+..-..|+.||.++.....||+.+..+-+.|++.|+..+.|--.+
T Consensus 80 ~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~ 143 (907)
T KOG2264|consen 80 ILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQ 143 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHH
Confidence 4555566666666677788888888999999999999999999999999999998877664433
No 173
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=81.38 E-value=14 Score=33.90 Aligned_cols=80 Identities=21% Similarity=0.295 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhhc---cCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHhhhHHH
Q 022288 31 DRLNEHFTELGNA---LDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAA--LTEESRELTQEKNDLREEKLSLRSE 105 (299)
Q Consensus 31 dKLNErF~eLrsl---LvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~--L~eE~~eLk~EkNELRdEns~LksE 105 (299)
+++.+-+..|..+ +.-+..-.|...=..|+-..|+.|+.+.++|.+..+. -.+++-++..|.+++|.|...++.+
T Consensus 105 ~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~ 184 (262)
T PF14257_consen 105 DKFDSFLDELSELGKVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQ 184 (262)
T ss_pred HHHHHHHHHHhccCceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555543 2222234555555555555666666666666554432 2333444555555555555555555
Q ss_pred HHHHH
Q 022288 106 IENLN 110 (299)
Q Consensus 106 ~e~L~ 110 (299)
+..|+
T Consensus 185 ~~~l~ 189 (262)
T PF14257_consen 185 LKYLD 189 (262)
T ss_pred HHHHH
Confidence 55444
No 174
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.17 E-value=8.1 Score=38.75 Aligned_cols=61 Identities=23% Similarity=0.275 Sum_probs=38.5
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 52 DKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 52 DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlq 114 (299)
+|..|-+..|..+.+.-.+ +++++++++..+...|++-..||+.-++.|+.++++||+|.+
T Consensus 203 ~~~~irasvisa~~eklR~--r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~ 263 (365)
T KOG2391|consen 203 GKLVIRASVISAVREKLRR--RREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQ 263 (365)
T ss_pred cccchhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444555555544443332 345566667777777777777777777778888877776543
No 175
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.11 E-value=7.1 Score=41.23 Aligned_cols=19 Identities=37% Similarity=0.636 Sum_probs=8.8
Q ss_pred HHHHHHHHHhhhHHHHHHH
Q 022288 91 EKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 91 EkNELRdEns~LksE~e~L 109 (299)
|+|+|..+...+..++++|
T Consensus 340 Er~~l~r~l~~i~~~~d~l 358 (581)
T KOG0995|consen 340 ERNKLKRELNKIQSELDRL 358 (581)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 176
>PRK03918 chromosome segregation protein; Provisional
Probab=81.05 E-value=20 Score=37.72 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 022288 84 ESRELTQEKNDLRE 97 (299)
Q Consensus 84 E~~eLk~EkNELRd 97 (299)
++..+..+.++|+.
T Consensus 681 ~~~~l~~~i~~l~~ 694 (880)
T PRK03918 681 ELEELEKRREEIKK 694 (880)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 177
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=81.02 E-value=9.3 Score=29.02 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=10.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHH
Q 022288 92 KNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 92 kNELRdEns~LksE~e~L~~ql 113 (299)
.+.+|.|+..|+.++++|+.-+
T Consensus 16 i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555554333
No 178
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=80.98 E-value=21 Score=27.76 Aligned_cols=51 Identities=16% Similarity=0.304 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 022288 58 ADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIEN 108 (299)
Q Consensus 58 ~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~ 108 (299)
-..-+.++++...++.++++.+.+..|++.+-.+-|++-++-..-...++.
T Consensus 22 ~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~ 72 (90)
T PF06103_consen 22 KKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDP 72 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344455666666666666666666666666666666666554444444433
No 179
>PRK14011 prefoldin subunit alpha; Provisional
Probab=80.89 E-value=10 Score=33.14 Aligned_cols=39 Identities=26% Similarity=0.407 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREE 98 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdE 98 (299)
+.+||+|++ .+++.|++..+.|.+.+.++..+.++|+.+
T Consensus 86 ~~eA~~~~~---~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~ 124 (144)
T PRK14011 86 VSEVIEDFK---KSVEELDKTKKEGNKKIEELNKEITKLRKE 124 (144)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777655 577777777778888888888887777754
No 180
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=80.88 E-value=15 Score=30.89 Aligned_cols=57 Identities=26% Similarity=0.440 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRA 119 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~ 119 (299)
.++++...++.|..+|..|.+.+-.+..+..++|.+...+..++..|+.+|+.....
T Consensus 28 ~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~ 84 (150)
T PF07200_consen 28 QVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQ 84 (150)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477778888888888888888887777777888888888888888888777665543
No 181
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=80.85 E-value=1.2 Score=36.13 Aligned_cols=50 Identities=34% Similarity=0.528 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 022288 58 ADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIE 107 (299)
Q Consensus 58 ~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e 107 (299)
.+.-.||.+|..++..|..++..|..++..|..+..+++.....|+..+.
T Consensus 21 ~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~ 70 (131)
T PF05103_consen 21 DEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALI 70 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhh
Confidence 45567788888888888877777777777777777666666666665543
No 182
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=80.82 E-value=6.8 Score=41.81 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELTQE 91 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk~E 91 (299)
.|..|+.+++.|+.+++.+..++..|+.+
T Consensus 430 ~ve~l~~e~~~L~~~~ee~k~eie~L~~~ 458 (652)
T COG2433 430 TVERLEEENSELKRELEELKREIEKLESE 458 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 183
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=80.79 E-value=24 Score=36.04 Aligned_cols=17 Identities=35% Similarity=0.559 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhhh
Q 022288 26 EKLRRDRLNEHFTELGN 42 (299)
Q Consensus 26 ERrRRdKLNErF~eLrs 42 (299)
||.||++|-+.+.+|--
T Consensus 110 ~r~qr~~La~~L~A~~r 126 (420)
T COG4942 110 EREQRRRLAEQLAALQR 126 (420)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 46888888888888765
No 184
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=80.76 E-value=5 Score=34.28 Aligned_cols=72 Identities=26% Similarity=0.327 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCCccCCCc
Q 022288 58 ADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMVPWAAMDHS 129 (299)
Q Consensus 58 ~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw~~~dps 129 (299)
-+|.+.-.+.+++-.+|-...-.|+.-.+.|.+..+-.++||..|++|-.-|-+=++--+.+..-|-+-+|+
T Consensus 45 l~a~e~~~d~~EEKaRlItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSaSSVFQst~ps 116 (120)
T KOG3650|consen 45 LDAVEAENDVEEEKARLITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVFQSTDPS 116 (120)
T ss_pred ccccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhcCCCc
Confidence 367888888888888998888899999999999999999999999999888865555555555445444443
No 185
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=80.74 E-value=7.6 Score=34.22 Aligned_cols=36 Identities=33% Similarity=0.530 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 81 LTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQR 116 (299)
Q Consensus 81 L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqr 116 (299)
|+.+..+|.+|...|+.|++++.-|.+.+...|++-
T Consensus 79 LE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666666666666666666555443
No 186
>PLN02678 seryl-tRNA synthetase
Probab=80.49 E-value=17 Score=37.05 Aligned_cols=37 Identities=16% Similarity=0.399 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 84 ESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 84 E~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
+..+|..+..+|++|...|..++..|+.++.+.+..+
T Consensus 72 ~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~i 108 (448)
T PLN02678 72 DATELIAETKELKKEITEKEAEVQEAKAALDAKLKTI 108 (448)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4456667778888888888888888888888877776
No 187
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=80.49 E-value=6.7 Score=37.03 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDL 95 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNEL 95 (299)
.+.+.+|..|+.+|+.|..++..|++|...|
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~ 248 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATL 248 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333
No 188
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=80.47 E-value=14 Score=31.83 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=6.4
Q ss_pred HHHHHHHHhhhHHHHHHH
Q 022288 92 KNDLREEKLSLRSEIENL 109 (299)
Q Consensus 92 kNELRdEns~LksE~e~L 109 (299)
+..|...+..|..+++++
T Consensus 37 I~sL~~K~~~lE~eld~~ 54 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKL 54 (143)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 189
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=80.26 E-value=21 Score=35.75 Aligned_cols=36 Identities=22% Similarity=0.417 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 85 SRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 85 ~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
..+|..+..+|+++...|+.++..++.++...+..+
T Consensus 68 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 68 AEALIAEVKELKEEIKALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345777777888888888888888888888877765
No 190
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=80.21 E-value=6.9 Score=38.47 Aligned_cols=56 Identities=25% Similarity=0.362 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
.+|-.++++++..+..|+.+++.+.-|+.||..|....+.-..||+.||..-|.+-
T Consensus 129 e~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~ 184 (319)
T PF09789_consen 129 EDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGD 184 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34445557778888888888888888888888888888888999998887777553
No 191
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=80.19 E-value=8.1 Score=38.12 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
+++-.+-..+.+|+..+..|..+.+.|+.+.+++..+...+-.+++.+|.+|
T Consensus 130 el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L 181 (342)
T PF06632_consen 130 ELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDL 181 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666677777777777777777777777777777777777776554
No 192
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=80.14 E-value=1.3 Score=46.89 Aligned_cols=45 Identities=36% Similarity=0.502 Sum_probs=37.5
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhccCC----CCCCCChhhhHHHHHHHHH
Q 022288 20 MQKADREKLRRDRLNEHFTELGNALDP----DRPKNDKATILADTVQLLK 65 (299)
Q Consensus 20 ~~KAerERrRRdKLNErF~eLrslLvP----~~~K~DKASIL~DAI~ylK 65 (299)
..|.---||-|||||.-+..|.+|| | .++|.||-|||-=++.||+
T Consensus 27 ~tkSNPSKRHRdRLNaELD~lAsLL-PfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 27 LTKSNPSKRHRDRLNAELDHLASLL-PFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred cccCCcchhHHHHhhhHHHHHHHhc-CCCHHHHhhhhhhhhhhhhHHHHH
Confidence 4555556888999999999999986 5 2369999999999999986
No 193
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=80.03 E-value=42 Score=36.16 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEH 78 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en 78 (299)
..++|..++.+|+.+.
T Consensus 546 r~~~lE~E~~~lr~el 561 (697)
T PF09726_consen 546 RRRQLESELKKLRREL 561 (697)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 194
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=79.94 E-value=8.9 Score=37.77 Aligned_cols=61 Identities=21% Similarity=0.259 Sum_probs=49.4
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022288 52 DKATILADTVQLLKDLTSQVEKLKTEHA-----ALTEESRELTQEKNDLREEKLSLRSEIENLNIQ 112 (299)
Q Consensus 52 DKASIL~DAI~ylKdLr~qVq~Lk~en~-----~L~eE~~eLk~EkNELRdEns~LksE~e~L~~q 112 (299)
.-+-|.++.|.-.-+|+.+.+++-+++- -...|++++-....|||.|..+|+.++..|+.+
T Consensus 253 efak~~G~lvna~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 253 ENAKVHGKFINALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3456788888888888888887765542 358899999999999999999999999988743
No 195
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=79.93 E-value=60 Score=33.63 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhhhccCCCCCCCChhh
Q 022288 30 RDRLNEHFTELGNALDPDRPKNDKAT 55 (299)
Q Consensus 30 RdKLNErF~eLrslLvP~~~K~DKAS 55 (299)
.++|-+.+..|... .|.....|--.
T Consensus 294 e~~iDrlL~~L~~~-dPtd~~~D~~~ 318 (462)
T KOG2199|consen 294 EDKIDRLLQVLHEA-DPTDEVQDDDD 318 (462)
T ss_pred HHHHHHHHHHHhhc-CCCCccCCCHH
Confidence 35677777788876 77655555433
No 196
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=79.93 E-value=16 Score=27.80 Aligned_cols=40 Identities=30% Similarity=0.319 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 70 QVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 70 qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
++..+..+...++.+++.++.|.++|+.|...|.+ .++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~-~~rIe 64 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR-HERIE 64 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHH
Confidence 34444444444444444444444444444444443 44444
No 197
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=79.90 E-value=6.3 Score=28.14 Aligned_cols=18 Identities=44% Similarity=0.602 Sum_probs=8.8
Q ss_pred HHHHHHHhhhHHHHHHHH
Q 022288 93 NDLREEKLSLRSEIENLN 110 (299)
Q Consensus 93 NELRdEns~LksE~e~L~ 110 (299)
..|+.++..||.+|.+|.
T Consensus 30 ~~LKk~kL~LKDei~~ll 47 (49)
T PF04325_consen 30 ERLKKEKLRLKDEIYRLL 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555555443
No 198
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=79.88 E-value=8 Score=36.52 Aligned_cols=59 Identities=15% Similarity=0.267 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
+|.-..+.....++..-++-....+++.....+|..||..|+.+++.|+.|+..--...
T Consensus 194 ~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~ 252 (269)
T KOG3119|consen 194 EYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLF 252 (269)
T ss_pred HHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555577777777888888888888888887776655443
No 199
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=79.87 E-value=9.4 Score=32.96 Aligned_cols=45 Identities=13% Similarity=0.414 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
.|..+|+.|...++...+-++..+.|..+++++...++.++..++
T Consensus 65 hLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~ 109 (126)
T PF07889_consen 65 HLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQ 109 (126)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 455677777776666666667777777777777777777777665
No 200
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=79.60 E-value=6.6 Score=33.98 Aligned_cols=50 Identities=28% Similarity=0.450 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 022288 57 LADTVQLLKDLTS-QVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEI 106 (299)
Q Consensus 57 L~DAI~ylKdLr~-qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~ 106 (299)
|.|-+-+..++.. +-++++.....-..-|-.|+.|+|.|++||..|+.|+
T Consensus 69 lCDRC~VtqE~akK~qqefe~s~~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 69 LCDRCTVTQELAKKKQQEFESSHLQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 5555555555533 3345555554555568889999999999999998875
No 201
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=79.57 E-value=19 Score=37.95 Aligned_cols=86 Identities=19% Similarity=0.318 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCChhhh-HHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHhhhH
Q 022288 28 LRRDRLNEHFTELGNALDPDRPKNDKATI-LADTVQLLKDLTSQVEKLKT---EHAALTEESRELTQEKNDLREEKLSLR 103 (299)
Q Consensus 28 rRRdKLNErF~eLrslLvP~~~K~DKASI-L~DAI~ylKdLr~qVq~Lk~---en~~L~eE~~eLk~EkNELRdEns~Lk 103 (299)
.|=+++.+|+..|..+ ..|-.. +.+.++|..+++++++.|.. ..+.|+.++..+..+..+.-...+..+
T Consensus 297 ~~L~~ve~Rl~~L~~l-------~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R 369 (557)
T COG0497 297 NRLEEVEERLFALKSL-------ARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIR 369 (557)
T ss_pred HHHHHHHHHHHHHHHH-------HHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999987 244444 89999999999999999985 345788888888888877776766666
Q ss_pred HHH-HHHHHHHHHHHHHc
Q 022288 104 SEI-ENLNIQYQQRVRAM 120 (299)
Q Consensus 104 sE~-e~L~~qlqqrl~~~ 120 (299)
... .+|+..+.+-|+..
T Consensus 370 ~~~A~~L~~~v~~eL~~L 387 (557)
T COG0497 370 KKAAKELEKEVTAELKAL 387 (557)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 554 57887777877776
No 202
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=79.38 E-value=7.7 Score=40.18 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhhc
Q 022288 27 KLRRDRLNEHFTELGNA 43 (299)
Q Consensus 27 RrRRdKLNErF~eLrsl 43 (299)
.++.+++++.+..|+..
T Consensus 49 ~~~~~~~~~~l~~L~~~ 65 (646)
T PRK05771 49 RSLLTKLSEALDKLRSY 65 (646)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34566678888777776
No 203
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=79.31 E-value=12 Score=30.92 Aligned_cols=53 Identities=23% Similarity=0.295 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQ 112 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~q 112 (299)
+-=+|+||-..++. |...+..|+++++.+..+...|+.+...++.++..|..|
T Consensus 64 aQl~ieYLl~~q~~---L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 64 AQLSIEYLLHCQEY---LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456776554442 334455555566666666666666666666666655544
No 204
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=79.24 E-value=12 Score=31.87 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEI 106 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~ 106 (299)
.+|..+-..|+..+..|+++...+.+.+++|+.+...+..++
T Consensus 33 ~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 33 GELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555555555555555555444444443
No 205
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=79.21 E-value=22 Score=37.94 Aligned_cols=7 Identities=14% Similarity=0.681 Sum_probs=3.3
Q ss_pred CCCcccc
Q 022288 248 DLPSGQR 254 (299)
Q Consensus 248 ~~~~~~~ 254 (299)
.+|+|++
T Consensus 1074 ~lSgge~ 1080 (1164)
T TIGR02169 1074 AMSGGEK 1080 (1164)
T ss_pred hcCcchH
Confidence 4444444
No 206
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=79.09 E-value=29 Score=29.76 Aligned_cols=74 Identities=12% Similarity=0.051 Sum_probs=55.1
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCCcc
Q 022288 52 DKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMVPWAA 125 (299)
Q Consensus 52 DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw~~ 125 (299)
+...-...+++..+.|..++.-....++.|++|++........-.+....|+..+..++.++....+...|--.
T Consensus 17 ~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~ 90 (160)
T PF13094_consen 17 EDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQ 90 (160)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhc
Confidence 33444667788888888888888888888888887777666666666678888888888888888877544443
No 207
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=78.81 E-value=17 Score=30.31 Aligned_cols=55 Identities=22% Similarity=0.240 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
.+.+.+-..+..+....+.+..+.+.|.++.+.|..|...|+.+.+- +..+.+.-
T Consensus 43 ~~g~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~----i~e~AR~~ 97 (117)
T COG2919 43 WFGKNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDGRDY----IEERARSE 97 (117)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH----HHHHHHHH
Confidence 33444444444555544444444444444444444444444444333 44555543
No 208
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=78.63 E-value=14 Score=39.59 Aligned_cols=16 Identities=6% Similarity=0.293 Sum_probs=8.3
Q ss_pred HHHHHHHHHhhhHHHH
Q 022288 91 EKNDLREEKLSLRSEI 106 (299)
Q Consensus 91 EkNELRdEns~LksE~ 106 (299)
....|+|++..|+..+
T Consensus 595 aL~amqdk~~~LE~sL 610 (697)
T PF09726_consen 595 ALSAMQDKNQHLENSL 610 (697)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3345566665555444
No 209
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=78.42 E-value=15 Score=40.30 Aligned_cols=55 Identities=20% Similarity=0.313 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNI 111 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ 111 (299)
|.++..-...-.+.++.|.++.+.+.....++..++..|+.++..|+.+++.|..
T Consensus 204 lqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 204 LQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3333333333333444444444445555555555555555555555555555543
No 210
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=78.41 E-value=8.5 Score=39.94 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=18.5
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHcCCCcc
Q 022288 98 EKLSLRSEIENLNIQYQQRVRAMVPWAA 125 (299)
Q Consensus 98 Ens~LksE~e~L~~qlqqrl~~~~pw~~ 125 (299)
+...|+.++..++.++.++.+.+.-|.+
T Consensus 263 ~r~~Le~ei~~le~e~~e~~~~l~~l~~ 290 (650)
T TIGR03185 263 EREQLERQLKEIEAARKANRAQLRELAA 290 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556777777777777777666655554
No 211
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=78.37 E-value=18 Score=40.25 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=19.1
Q ss_pred cccCCCCcccccceecCCCCC-CCCCCCcccccch
Q 022288 224 EKNEDSNDVTTDLELKTPGST-TDQDLPSGQRKSK 257 (299)
Q Consensus 224 ~~~~~~~dv~t~lelktpgs~-~~q~~~~~~~~~~ 257 (299)
|.--+.+|.-..|.+|----. ...+..+++.|++
T Consensus 650 Edk~en~dlfakL~~~Fatq~k~~k~~e~~eekkt 684 (1102)
T KOG1924|consen 650 EDKLENDDLFAKLALKFATQPKVKKEQEGGEEKKT 684 (1102)
T ss_pred hhhccchHHHHHHHHHhhccccccccccccccccc
Confidence 334566788888888753332 2344555555554
No 212
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=78.35 E-value=27 Score=31.00 Aligned_cols=41 Identities=22% Similarity=0.386 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSL 102 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~L 102 (299)
..+.++..+|..|+.++..|.+.++.+-.+..+.+.+...+
T Consensus 22 ~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~ 62 (188)
T PF10018_consen 22 QEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTL 62 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777788888888888888877777777777666544
No 213
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=78.34 E-value=26 Score=30.94 Aligned_cols=37 Identities=32% Similarity=0.468 Sum_probs=20.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 74 LKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 74 Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
|+.++..|..+++.|+.|...++.|...++.--+.|.
T Consensus 79 LE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555554
No 214
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=78.26 E-value=10 Score=35.52 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIEN 108 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~ 108 (299)
+|+.+++.|+.++..|.-.++++.-+.+.+.+....|-.++++
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555444444444444444444444444444443
No 215
>PRK02224 chromosome segregation protein; Provisional
Probab=78.25 E-value=16 Score=38.55 Aligned_cols=45 Identities=40% Similarity=0.497 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
.+|...+..|+.+...+..+...+....+.++.+...|+.+++.+
T Consensus 352 ~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el 396 (880)
T PRK02224 352 DDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEEL 396 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333334444444444444444444433
No 216
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=78.12 E-value=19 Score=33.71 Aligned_cols=68 Identities=15% Similarity=0.194 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHHHHHHHH----HH---HHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcC
Q 022288 54 ATILADTVQLLKDLTSQVE----KL---KTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMV 121 (299)
Q Consensus 54 ASIL~DAI~ylKdLr~qVq----~L---k~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~ 121 (299)
.-.|.|....+..|..+-. +| .+.+..|+..++.++.|++..++...+|..|...|..++-.-.+.+.
T Consensus 31 e~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~l 105 (230)
T PF10146_consen 31 EKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYL 105 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3567777777777766533 33 33445566666777777777777777777777777766666555543
No 217
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=78.04 E-value=21 Score=31.37 Aligned_cols=11 Identities=36% Similarity=0.652 Sum_probs=5.0
Q ss_pred HHHHHHHHHhh
Q 022288 31 DRLNEHFTELG 41 (299)
Q Consensus 31 dKLNErF~eLr 41 (299)
+-|-+++..|-
T Consensus 20 dsle~~v~~LE 30 (140)
T PF10473_consen 20 DSLEDHVESLE 30 (140)
T ss_pred hhHHHHHHHHH
Confidence 33444444444
No 218
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=77.96 E-value=11 Score=30.67 Aligned_cols=61 Identities=18% Similarity=0.322 Sum_probs=37.0
Q ss_pred HHHHHhhhccCCCCC---CCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 35 EHFTELGNALDPDRP---KNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLR 96 (299)
Q Consensus 35 ErF~eLrslLvP~~~---K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELR 96 (299)
--+.+|..+ +++.. -.+.+-|..+.-+.+.+|..+++.++.....|.....+|+.+..+++
T Consensus 38 ~v~~eL~~l-~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q 101 (110)
T TIGR02338 38 KALEELERL-PDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQ 101 (110)
T ss_pred HHHHHHHcC-CCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566654 55543 44566666666666777777777776666666666555555554444
No 219
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=77.94 E-value=11 Score=42.56 Aligned_cols=15 Identities=13% Similarity=0.412 Sum_probs=10.7
Q ss_pred CCCCCcCCCCCCCCc
Q 022288 164 NQNPGVIPNPCSTFV 178 (299)
Q Consensus 164 ~q~~~~~~~p~~~~~ 178 (299)
++.|-+|..+|.+|+
T Consensus 547 ~~~ptIvvs~~~~~~ 561 (1074)
T KOG0250|consen 547 GNRPTIVVSSFTPFD 561 (1074)
T ss_pred CCCCcEEEecCCccc
Confidence 347888887777765
No 220
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=77.70 E-value=17 Score=32.61 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESREL 88 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eL 88 (299)
..|.+|..+.+.|+.+...|....+.+
T Consensus 127 ~~i~~L~~e~~~L~~~~~~l~~~~e~~ 153 (189)
T PF10211_consen 127 EEIEELEEEKEELEKQVQELKNKCEQL 153 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 221
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=77.66 E-value=17 Score=33.56 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 022288 81 LTEESRELTQEKNDLREEKL 100 (299)
Q Consensus 81 L~eE~~eLk~EkNELRdEns 100 (299)
|.+|+++|+.|..+|+.++.
T Consensus 74 l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 74 LREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 222
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.57 E-value=20 Score=40.38 Aligned_cols=64 Identities=19% Similarity=0.234 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
+...-..+.+++.++..++.+...+..++..++.++++|..+...|.++++..+.++..|...+
T Consensus 307 l~~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~~~~~l~~e~gkl~~~~~~~~~~~~~~~~~~ 370 (1311)
T TIGR00606 307 YHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLI 370 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445778888888888888888889999999999998888888888887777776666554
No 223
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=77.52 E-value=12 Score=32.86 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHHh
Q 022288 61 VQLLKDLTSQVEKLKTEHAALTE---ESRELTQEKNDLREEKL 100 (299)
Q Consensus 61 I~ylKdLr~qVq~Lk~en~~L~e---E~~eLk~EkNELRdEns 100 (299)
..-++.|+.++......+..|.. .+.+|+.+..+|+.++.
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 34444555555554444444444 44455555555544444
No 224
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=77.31 E-value=9.3 Score=36.73 Aligned_cols=48 Identities=10% Similarity=0.289 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 69 SQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 69 ~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
..++.+..++..++..+..|..+...|......-+.|+++.+ .||.++
T Consensus 169 ~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~q----KRL~sL 216 (267)
T PF10234_consen 169 EAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQ----KRLQSL 216 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 333344444444444444444444444444445555555554 555554
No 225
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=77.29 E-value=18 Score=27.31 Aligned_cols=21 Identities=14% Similarity=0.352 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 022288 56 ILADTVQLLKDLTSQVEKLKT 76 (299)
Q Consensus 56 IL~DAI~ylKdLr~qVq~Lk~ 76 (299)
-+...|.-|+..-.++..|..
T Consensus 11 ~i~~~i~~i~~~~~~l~~l~~ 31 (103)
T PF00804_consen 11 EIREDIDKIKEKLNELRKLHK 31 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 226
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=77.28 E-value=17 Score=38.44 Aligned_cols=63 Identities=25% Similarity=0.322 Sum_probs=41.9
Q ss_pred CChhhhHHHH----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHH
Q 022288 51 NDKATILADT----VQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEK-------LSLRSEIENLNIQY 113 (299)
Q Consensus 51 ~DKASIL~DA----I~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEn-------s~LksE~e~L~~ql 113 (299)
++++.++.+- ..-+.++++++.+|..++..++.+++++..|++||..-. ..|..|.+.||.++
T Consensus 211 N~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDky 284 (596)
T KOG4360|consen 211 NTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKY 284 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5666666333 344556677777777778888888888888888864332 34556666666555
No 227
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=77.27 E-value=6.6 Score=28.33 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQ 90 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~ 90 (299)
.++.+|..++..|+.+|..|..++..|+.
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555555555555555555555555544
No 228
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=77.20 E-value=1.5 Score=39.74 Aligned_cols=50 Identities=28% Similarity=0.344 Sum_probs=41.5
Q ss_pred hhccchHHHHHHHHHHHHHHHHhhhccCCCCC--CCChhhhHHHHHHHHHHHH
Q 022288 18 RKMQKADREKLRRDRLNEHFTELGNALDPDRP--KNDKATILADTVQLLKDLT 68 (299)
Q Consensus 18 Rk~~KAerERrRRdKLNErF~eLrslLvP~~~--K~DKASIL~DAI~ylKdLr 68 (299)
.++-++.+||+|=.-||+.|..||.+ +|..+ |..|.--|.-|.+||-.|-
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~i-iptlPsdklSkiqtLklA~ryidfl~ 129 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKI-IPTLPSDKLSKIQTLKLAARYIDFLY 129 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhh-cCCCCccccccccchhhcccCCchhh
Confidence 44556689999999999999999998 67664 8888888888888887764
No 229
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=77.20 E-value=28 Score=30.95 Aligned_cols=58 Identities=31% Similarity=0.418 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRA 119 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~ 119 (299)
..-++|+.+|+.|+.+|..|...++.+......|.+....|+.+...|.....+-|+.
T Consensus 89 ~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~ 146 (158)
T PF09744_consen 89 QERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRK 146 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888877777666666666666677777777776555554443
No 230
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=77.02 E-value=8 Score=36.26 Aligned_cols=54 Identities=31% Similarity=0.368 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 022288 54 ATILADTVQLLKDLTSQV---EKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIE 107 (299)
Q Consensus 54 ASIL~DAI~ylKdLr~qV---q~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e 107 (299)
++...|.-..-.+|++.. +.++..+..|...++++..|.+.|-+|++.|+++++
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 344444444444444443 344455667777777777777777777777777765
No 231
>PF15294 Leu_zip: Leucine zipper
Probab=77.01 E-value=10 Score=36.81 Aligned_cols=64 Identities=20% Similarity=0.289 Sum_probs=44.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 022288 53 KATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVR 118 (299)
Q Consensus 53 KASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~ 118 (299)
|..-|.+. .-.--|..++.+|+++|+.|.+.+..+.......-+|+..|+.++..|+. .+...+
T Consensus 117 KL~pl~e~-g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~-~~~~~~ 180 (278)
T PF15294_consen 117 KLEPLNES-GGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD-EQGDQK 180 (278)
T ss_pred cccccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhh
Confidence 44444444 23344667788888888888888888888888888888888888888875 444443
No 232
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=76.93 E-value=28 Score=33.71 Aligned_cols=48 Identities=25% Similarity=0.300 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNI 111 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ 111 (299)
+.+++.+-++|-++++.|+.+..+++.+...|+-||++|.....+|..
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ 191 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPG 191 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 445555556666666666666666666666666666666666555553
No 233
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=76.87 E-value=17 Score=28.55 Aligned_cols=16 Identities=44% Similarity=0.536 Sum_probs=6.1
Q ss_pred HHHHHHHHhhhHHHHH
Q 022288 92 KNDLREEKLSLRSEIE 107 (299)
Q Consensus 92 kNELRdEns~LksE~e 107 (299)
...|++|+..|+-|+.
T Consensus 51 ~~~l~~e~~~L~lE~~ 66 (97)
T PF04999_consen 51 IDQLQEENERLRLEIA 66 (97)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 234
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=76.81 E-value=12 Score=38.85 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKT-EHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~-en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlq 114 (299)
|.+-.+.++++...+++.+. +++.++..++.|..|..+||.....||+.+++|..+.|
T Consensus 277 l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~q 335 (502)
T KOG0982|consen 277 LSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQ 335 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34444555555555554443 45567777788888888888888888888888876653
No 235
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=76.80 E-value=3.5 Score=43.52 Aligned_cols=42 Identities=21% Similarity=0.404 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLR 103 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~Lk 103 (299)
+|+--|+.++++|..||+.|..|.-.|++...+|-.||..||
T Consensus 302 Ey~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 302 EYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 455555555555555555555555555555555555544443
No 236
>PLN02320 seryl-tRNA synthetase
Probab=76.72 E-value=27 Score=36.33 Aligned_cols=56 Identities=25% Similarity=0.447 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHhhhHH---------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 65 KDLTSQVEKLKTEHAALTE---------ESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~e---------E~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
++|+.+++.|+.+...+.. +..+|..+..+|+++...|+.++..++.++++.+..+
T Consensus 103 r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 103 LALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455555555544433333 2346667777888888888888888888888877775
No 237
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.69 E-value=24 Score=34.72 Aligned_cols=55 Identities=20% Similarity=0.288 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 56 ILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 56 IL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
+..++-..++.|..++.++.+...+-+. +|..+.++|..-...|...+++|+.++
T Consensus 130 ~~~~~~~~~~~l~~~va~v~q~~~~qq~---Els~~L~~l~~~~~~~s~~~~k~esei 184 (300)
T KOG2629|consen 130 QFDKAAKSLNALMDEVAQVSQLLATQQS---ELSRALASLKNTLVQLSRNIEKLESEI 184 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3455666777777777777765544333 555556666655557777777777665
No 238
>PRK02224 chromosome segregation protein; Provisional
Probab=76.69 E-value=20 Score=37.98 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 022288 56 ILADTVQLLKDLTSQVEKLKTEH 78 (299)
Q Consensus 56 IL~DAI~ylKdLr~qVq~Lk~en 78 (299)
-|.++.+-+..|+.+++.|+..+
T Consensus 531 ~le~~~~~~~~l~~e~~~l~~~~ 553 (880)
T PRK02224 531 TIEEKRERAEELRERAAELEAEA 553 (880)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554444
No 239
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=76.32 E-value=44 Score=29.69 Aligned_cols=22 Identities=9% Similarity=0.012 Sum_probs=11.6
Q ss_pred CCCCCCccCCCCCchhhhhhhhhh
Q 022288 172 NPCSTFVPYMAPNTLVEQQSAQYA 195 (299)
Q Consensus 172 ~p~~~~~py~~p~~~~e~~~~~~~ 195 (299)
-+...|+||++- ..=+...-+.
T Consensus 118 ~~~~~~~PwP~E--d~mR~G~L~~ 139 (188)
T PF10018_consen 118 PSGDFFRPWPQE--DQMRRGMLAQ 139 (188)
T ss_pred ccccccCCCCCH--HHHHHhHHHh
Confidence 346678888444 2234444443
No 240
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=76.20 E-value=30 Score=36.91 Aligned_cols=13 Identities=31% Similarity=0.112 Sum_probs=7.9
Q ss_pred cccccceecCCCC
Q 022288 231 DVTTDLELKTPGS 243 (299)
Q Consensus 231 dv~t~lelktpgs 243 (299)
-|+.|=++-.|++
T Consensus 641 ~vTldG~~~~~~G 653 (1164)
T TIGR02169 641 MVTLEGELFEKSG 653 (1164)
T ss_pred EEEeCceeEcCCc
Confidence 4666666666554
No 241
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=76.18 E-value=28 Score=38.80 Aligned_cols=40 Identities=40% Similarity=0.539 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 70 QVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 70 qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
++..|...+..+..+...|..+..++.++...++.++.++
T Consensus 871 ~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 910 (1163)
T COG1196 871 EKEELEDELKELEEEKEELEEELRELESELAELKEEIEKL 910 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444444444444444333
No 242
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=76.18 E-value=22 Score=30.44 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
+..|++-|.+|+.++.+++..+ ..++..++.. +..+...|..+++.|+..+++.....
T Consensus 5 a~~al~ki~~l~~~~~~i~~~~---~~~I~~i~~~---~~~~~~~l~~~i~~l~~~l~~y~e~~ 62 (149)
T PF07352_consen 5 ADWALRKIAELQREIARIEAEA---NDEIARIKEW---YEAEIAPLQNRIEYLEGLLQAYAEAN 62 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 5678888888888888887644 3455444433 56677899999999998888877553
No 243
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=76.07 E-value=26 Score=30.73 Aligned_cols=51 Identities=14% Similarity=0.354 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 022288 68 TSQVEKLKTEHAALTEESRELTQ---EKNDLREEKLSLRSEIENLNIQYQQRVR 118 (299)
Q Consensus 68 r~qVq~Lk~en~~L~eE~~eLk~---EkNELRdEns~LksE~e~L~~qlqqrl~ 118 (299)
.++...|+.++......+..|+. ...+|+.+...|+.+.......++..+.
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~ 79 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLA 79 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444433 2333444444444444433333334443
No 244
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=76.06 E-value=46 Score=30.91 Aligned_cols=63 Identities=16% Similarity=0.279 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRA 119 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~ 119 (299)
|...-.....|+..++.-...-......-+.++.|-..|+.|+.....++..|+.|+++--+.
T Consensus 121 ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 121 IAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555544444555556666666777777777777777777666554433
No 245
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=76.01 E-value=12 Score=28.46 Aligned_cols=45 Identities=13% Similarity=0.338 Sum_probs=30.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 71 VEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 71 Vq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
+.+|+.+...+...+..|+.|..+|+++...++..+.+|=.-|..
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~ 46 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEV 46 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666667777777777777777777777777555543
No 246
>PRK02119 hypothetical protein; Provisional
Probab=75.75 E-value=21 Score=27.81 Aligned_cols=51 Identities=6% Similarity=0.086 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 59 DTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 59 DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
+.-..|.+|+.++.-++..++.|...+-.-.++...|+.+...|...+..+
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334566677777776666666666666666666666666666665555443
No 247
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=75.70 E-value=10 Score=40.06 Aligned_cols=53 Identities=26% Similarity=0.384 Sum_probs=32.5
Q ss_pred HHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 63 LLKDLTSQ----VEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 63 ylKdLr~q----Vq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
.|++|+.+ ++.|+.+...+.+.+..|..+.+.|+.|+......+..|+.+|+.
T Consensus 5 ~l~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~e 61 (617)
T PF15070_consen 5 SLKQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSE 61 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 345555666666666666666666666666666666666666655
No 248
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=75.63 E-value=9.5 Score=37.20 Aligned_cols=46 Identities=28% Similarity=0.396 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
..|..++.+++..++.|.+..++|..+.+.++.+...|+.++..|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 4 EALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555566666666666666666666666666666666666665554
No 249
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=75.59 E-value=8.4 Score=28.09 Aligned_cols=86 Identities=20% Similarity=0.321 Sum_probs=48.6
Q ss_pred HHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHhhhHHHH
Q 022288 31 DRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQE----KNDLREEKLSLRSEI 106 (299)
Q Consensus 31 dKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~E----kNELRdEns~LksE~ 106 (299)
+.|..|+..-...|.-... ..-...+...+..++.+..++...+..+..+.+....|... ...+++....|...-
T Consensus 11 ~~l~~Wl~~~e~~l~~~~~-~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w 89 (105)
T PF00435_consen 11 DELLDWLQETEAKLSSSEP-GSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRW 89 (105)
T ss_dssp HHHHHHHHHHHHHHCSCTH-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 4456666665555411111 23344466677777777777777777777777766666332 233455555555555
Q ss_pred HHHHHHHHHHH
Q 022288 107 ENLNIQYQQRV 117 (299)
Q Consensus 107 e~L~~qlqqrl 117 (299)
..|...+..|.
T Consensus 90 ~~l~~~~~~r~ 100 (105)
T PF00435_consen 90 EALCELVEERR 100 (105)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 250
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=75.45 E-value=24 Score=28.46 Aligned_cols=51 Identities=24% Similarity=0.268 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 69 SQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRA 119 (299)
Q Consensus 69 ~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~ 119 (299)
++-++|..+...|+..+..|.....+.++|+..|++|-+-|+.=+.--++.
T Consensus 16 e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 16 EEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567777788888888888888888888888888888887444444433
No 251
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=75.26 E-value=8.6 Score=36.91 Aligned_cols=62 Identities=23% Similarity=0.288 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 29 RRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKN 93 (299)
Q Consensus 29 RRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkN 93 (299)
=|+++|+.=.+.|+++. . +..+..=+.+.-.-+++|++++++++.+.+.+.++++++....+
T Consensus 4 l~~~~~~~~~~~r~l~~-~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (378)
T TIGR01554 4 LKEQREEIVAEIRSLLD-K--AEKLEKELTAAALEKEELETDVEKLKEEIKLLEDAIADLEKVTE 65 (378)
T ss_pred HHHHHHHHHHHHHHHHh-h--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 37788899999999864 1 11112222233334556666666666666666666655544333
No 252
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=75.09 E-value=19 Score=38.85 Aligned_cols=11 Identities=9% Similarity=0.311 Sum_probs=4.8
Q ss_pred hHHHHHHHHHH
Q 022288 56 ILADTVQLLKD 66 (299)
Q Consensus 56 IL~DAI~ylKd 66 (299)
|+..|-+++.+
T Consensus 498 ii~~A~~~~~~ 508 (771)
T TIGR01069 498 IIEQAKTFYGE 508 (771)
T ss_pred HHHHHHHHHHh
Confidence 44444444433
No 253
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=74.95 E-value=21 Score=33.72 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 90 QEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 90 ~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
.|-..||.|+..|++|+|+|.++|...+...
T Consensus 116 sEF~~lr~e~EklkndlEk~ks~lr~ei~~~ 146 (220)
T KOG3156|consen 116 SEFANLRAENEKLKNDLEKLKSSLRHEISKT 146 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555689999999999999999999988654
No 254
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=74.84 E-value=11 Score=36.27 Aligned_cols=88 Identities=25% Similarity=0.316 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 31 DRLNEHFTELGNALDPDRPKNDKATILADTVQLLK-DLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 31 dKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylK-dLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
|.||+-+...+.-| -......|-.||+.|+.-+. -....+-..--+|..+..++..-+.+.++|.++...|+++++.|
T Consensus 141 del~e~~~~el~~l-~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L 219 (258)
T PF15397_consen 141 DELNEMRQMELASL-SRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQL 219 (258)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444332 11124456678886655443 35555555556777888888888888999999999999999998
Q ss_pred HHHHHHHHHHc
Q 022288 110 NIQYQQRVRAM 120 (299)
Q Consensus 110 ~~qlqqrl~~~ 120 (299)
+.+.+ -++.+
T Consensus 220 ~~~~~-~~Re~ 229 (258)
T PF15397_consen 220 QAQAQ-DPREV 229 (258)
T ss_pred HHhhc-chHHH
Confidence 87666 44443
No 255
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=74.65 E-value=16 Score=34.02 Aligned_cols=50 Identities=32% Similarity=0.410 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh--------------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAAL--------------TEESRELTQEKNDLREEKLSLRSEIENLNI 111 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L--------------~eE~~eLk~EkNELRdEns~LksE~e~L~~ 111 (299)
.|+.+|.++++.+.....+| ++..++|+.+.|-|+++...|+.++.+++.
T Consensus 81 s~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e 144 (203)
T KOG3433|consen 81 SVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQE 144 (203)
T ss_pred HHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35556666655554444333 444457777777777777777777776653
No 256
>KOG3977 consensus Troponin I [Cytoskeleton]
Probab=74.64 E-value=21 Score=33.61 Aligned_cols=70 Identities=23% Similarity=0.332 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHH
Q 022288 26 EKLRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEH-------AALTEESRELTQEKNDLREE 98 (299)
Q Consensus 26 ERrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en-------~~L~eE~~eLk~EkNELRdE 98 (299)
|..+|+.=..++.+=|-+-.|+....|-.+.|.+-+ ++|.++|..|+++. .....||+.|+++.|+||..
T Consensus 62 qq~~kEqErqr~LaeR~i~lp~~d~l~d~g~Lq~ly---~~l~arv~~leEEkYDi~~~v~qt~~EIndLtikvnDLRGK 138 (221)
T KOG3977|consen 62 QQELKEQERQRYLAERTIPLPDVDSLDDRGLLQDLY---RELHARVDALEEEKYDIEAKVTQTETEINDLTIKVNDLRGK 138 (221)
T ss_pred HHHHHHHHHHHHHHHccCCCCCCCcccchHHHHHHH---HHHHHHHHHHHHhhcchhheeehhhhhHHHHHHHHHHhccc
Confidence 445555444555555655557777777766666544 67788888888765 35677999999999999853
No 257
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=74.62 E-value=8.4 Score=36.47 Aligned_cols=17 Identities=24% Similarity=0.173 Sum_probs=6.4
Q ss_pred HHHHHhhhHHHHHHHHH
Q 022288 95 LREEKLSLRSEIENLNI 111 (299)
Q Consensus 95 LRdEns~LksE~e~L~~ 111 (299)
|..|...++.++..|+.
T Consensus 94 L~~E~~~ak~r~~~le~ 110 (239)
T COG1579 94 LNIEIQIAKERINSLED 110 (239)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 258
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=74.60 E-value=19 Score=30.26 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh
Q 022288 54 ATILADTVQLLKDLTSQVEKLKTEHA 79 (299)
Q Consensus 54 ASIL~DAI~ylKdLr~qVq~Lk~en~ 79 (299)
+-.|..+=.-+.+++.++..|+.+..
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~ 83 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAE 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555554443
No 259
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=74.56 E-value=32 Score=36.44 Aligned_cols=7 Identities=14% Similarity=0.088 Sum_probs=2.9
Q ss_pred ceecCCC
Q 022288 236 LELKTPG 242 (299)
Q Consensus 236 lelktpg 242 (299)
-++-+||
T Consensus 645 g~~v~~~ 651 (1179)
T TIGR02168 645 YRIVTLD 651 (1179)
T ss_pred ceEEecC
Confidence 3344444
No 260
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=74.54 E-value=42 Score=26.80 Aligned_cols=11 Identities=36% Similarity=0.567 Sum_probs=6.7
Q ss_pred HHHHHHHHhhh
Q 022288 32 RLNEHFTELGN 42 (299)
Q Consensus 32 KLNErF~eLrs 42 (299)
||||+|..|+.
T Consensus 1 Rl~elLd~ir~ 11 (79)
T PF08581_consen 1 RLNELLDAIRQ 11 (79)
T ss_dssp HHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 46666666664
No 261
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=74.18 E-value=25 Score=37.18 Aligned_cols=47 Identities=26% Similarity=0.356 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
.+.+|+.++..++..+..+..+...|+.+.+.++.+...|+..+..|
T Consensus 441 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l 487 (1179)
T TIGR02168 441 ELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444
No 262
>PRK15396 murein lipoprotein; Provisional
Probab=74.14 E-value=17 Score=29.15 Aligned_cols=41 Identities=15% Similarity=0.386 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 70 QVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 70 qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
++++|..++..|..+++.+..+.+.+|.....-+.|-.|-+
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN 66 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARAN 66 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555555555555555555555
No 263
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=74.12 E-value=8.2 Score=34.72 Aligned_cols=26 Identities=19% Similarity=0.155 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 85 SRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 85 ~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
++.++.+...+++...+---.|.-|+
T Consensus 137 i~~~~~~~~~~~~~anrwTDNI~~l~ 162 (188)
T PF03962_consen 137 IEKLKEEIKIAKEAANRWTDNIFSLK 162 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33344444444444444444444443
No 264
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=73.97 E-value=14 Score=42.53 Aligned_cols=80 Identities=20% Similarity=0.228 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhhhcc-CCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHH
Q 022288 27 KLRRDRLNEHFTELGNAL-DPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSE 105 (299)
Q Consensus 27 RrRRdKLNErF~eLrslL-vP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE 105 (299)
+.+=+++.+.+.+++++| .++.++.| +..-...+..|+.+|+.+.+.+..+++.+..++.+.+--..+...|..+
T Consensus 1200 ~s~f~~me~kl~~ir~il~~~svs~~~----i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~ 1275 (1758)
T KOG0994|consen 1200 ASRFLDMEEKLEEIRAILSAPSVSAED----IAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQRE 1275 (1758)
T ss_pred HhHHHHHHHHHHHHHHHhcCCCccHHH----HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHH
Confidence 345567888899999987 45555544 3333344455666666666666666666666655555444555555555
Q ss_pred HHHHH
Q 022288 106 IENLN 110 (299)
Q Consensus 106 ~e~L~ 110 (299)
.+.|.
T Consensus 1276 ~~~l~ 1280 (1758)
T KOG0994|consen 1276 FNGLL 1280 (1758)
T ss_pred HHHHH
Confidence 55444
No 265
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=73.86 E-value=15 Score=34.32 Aligned_cols=12 Identities=17% Similarity=0.185 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLT 68 (299)
Q Consensus 57 L~DAI~ylKdLr 68 (299)
|++-|+-.|.++
T Consensus 100 l~e~~en~K~~~ 111 (203)
T KOG3433|consen 100 LGESIENRKAGR 111 (203)
T ss_pred HHHHHHHHHhhh
Confidence 344444444433
No 266
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=73.69 E-value=5.9 Score=34.20 Aligned_cols=49 Identities=22% Similarity=0.315 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIE 107 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e 107 (299)
+..|.+.||.-.- =..++|.+.|.+.|++|....+.|+.||..||.-+.
T Consensus 50 IeQAMDLVKtHLm--fAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~s 98 (123)
T KOG4797|consen 50 IEQAMDLVKTHLM--FAVREEVEVLKEQIRELEERNSALERENSLLKTLAS 98 (123)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3455555553110 123345556666777776667777888888887553
No 267
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=73.61 E-value=34 Score=29.21 Aligned_cols=50 Identities=14% Similarity=0.207 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 61 VQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 61 I~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
|.-=.+|+..++.|+.++..+...+.+|..++++++.....-|..+..|+
T Consensus 36 ~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~ 85 (107)
T PF09304_consen 36 AKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELE 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455677777777777777777777777777776655555554444444
No 268
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=73.56 E-value=32 Score=28.23 Aligned_cols=54 Identities=24% Similarity=0.383 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQR 116 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqr 116 (299)
+-|.+++.+.-.++..|..|..++.+|+.+...-+. ...++.++++++.+++..
T Consensus 17 ~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~ 70 (106)
T PF05837_consen 17 EKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKS 70 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHH
Confidence 333344444444444444555555555444433332 345667777777766643
No 269
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=73.51 E-value=17 Score=41.45 Aligned_cols=62 Identities=19% Similarity=0.289 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 59 DTVQLLKDLTSQVEKLKTEHAA--------LTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 59 DAI~ylKdLr~qVq~Lk~en~~--------L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
.+.+.|++||++|+.|...++. |++.+.++..=..|++.....--...+.++++.|++|..|
T Consensus 361 pnarvirElReEve~lr~qL~~ae~~~~~el~e~l~esekli~ei~~twEEkl~ktE~in~erq~~L~~~ 430 (1714)
T KOG0241|consen 361 PNARVIRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIKEITVTWEEKLRKTEEINQERQAQLESM 430 (1714)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888766543 3444444333334444333333345677888888888887
No 270
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=73.45 E-value=21 Score=27.06 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQEKNDLR 96 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~EkNELR 96 (299)
++..+++.++.+++.++++.+.|+.|.+.|.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444444444444444444444444444443
No 271
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=73.25 E-value=22 Score=35.36 Aligned_cols=32 Identities=25% Similarity=0.497 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 85 SRELTQEKNDLREEKLSLRSEIENLNIQYQQR 116 (299)
Q Consensus 85 ~~eLk~EkNELRdEns~LksE~e~L~~qlqqr 116 (299)
...+...+.+|..+...|+.++..|+.+++..
T Consensus 377 ~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 377 LKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555566666666666666666555544
No 272
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=73.13 E-value=1.1 Score=47.08 Aligned_cols=63 Identities=33% Similarity=0.506 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCCccCCC
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMVPWAAMDH 128 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw~~~dp 128 (299)
.+.+++.++++++++...+.+..+.|..+.++|.+++..|+.++..|+... .....+|..+|-
T Consensus 68 ~i~~le~~l~~le~~l~e~~~~~e~L~~~~~~L~E~~~~L~~~~~~l~~~~---~~~l~~~~~l~~ 130 (759)
T PF01496_consen 68 EIDELEEELEELEEELRELNENLEKLEEELNELEEEKNVLEEEIEFLEELK---LEELEPWKNLDI 130 (759)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhhhhhhccc
Confidence 566777777777777777777777788888888888788887777776332 344457776543
No 273
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=72.87 E-value=36 Score=29.90 Aligned_cols=35 Identities=29% Similarity=0.360 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 022288 84 ESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVR 118 (299)
Q Consensus 84 E~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~ 118 (299)
+.+.+..|..+|++|....+.|++.|..|..+..+
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455666666777777777777777777665443
No 274
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=72.84 E-value=28 Score=34.77 Aligned_cols=36 Identities=22% Similarity=0.429 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 85 SRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 85 ~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
..+|..+..+|+++...|+.++..++.++...+..+
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456666777777788888888888888888877765
No 275
>PRK04654 sec-independent translocase; Provisional
Probab=72.39 E-value=34 Score=32.25 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCC
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMVPW 123 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw 123 (299)
++|+++|..+...+++...- .+.++|+.+.++++.+...++.++....+|++|--+.|...
T Consensus 34 k~irk~R~~~~~vk~El~~E-l~~~ELrk~l~~~~~~i~~~~~~lk~~~~el~q~a~~~~~~ 94 (214)
T PRK04654 34 LWVRRARMQWDSVKQELERE-LEAEELKRSLQDVQASLREAEDQLRNTQQQVEQGARALHDD 94 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45555555666666555321 23467777777777777777777777777887777777533
No 276
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=72.35 E-value=29 Score=31.80 Aligned_cols=58 Identities=26% Similarity=0.331 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 58 ADTVQLLKDLTSQVEKLKTEHAALTEESREL--TQEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 58 ~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eL--k~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
.|...-+-++..+++.|+.+.+.|.+-.+.- ..+.-++..|..+.+.||+.++.|++.
T Consensus 128 ~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~ 187 (262)
T PF14257_consen 128 EDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKY 187 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455588888888887777665543311 234556788888999999999876543
No 277
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=72.26 E-value=35 Score=24.80 Aligned_cols=58 Identities=16% Similarity=0.305 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHH
Q 022288 58 ADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREE----KLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 58 ~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdE----ns~LksE~e~L~~qlqq 115 (299)
+..+..+..+..+.+.++.++......++.|....+.|.+. ...++..+..|+..++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~ 91 (105)
T PF00435_consen 30 GSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEA 91 (105)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 56667788888888888888888888888888888888554 34666666666655544
No 278
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=72.24 E-value=16 Score=38.54 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHH
Q 022288 24 DREKLRRDRLNEHFT 38 (299)
Q Consensus 24 erERrRRdKLNErF~ 38 (299)
++||+==..||+||.
T Consensus 38 ~rEK~El~~LNDRLA 52 (546)
T KOG0977|consen 38 EREKKELQELNDRLA 52 (546)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555556777764
No 279
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=72.20 E-value=30 Score=35.72 Aligned_cols=60 Identities=22% Similarity=0.278 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcC
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMV 121 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~ 121 (299)
.-|++.+..++++......+.+...++..+..+++-....|....-.|+.++++-+..++
T Consensus 439 ~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~~ISk~y 498 (507)
T PF05600_consen 439 ESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEADISKRY 498 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333444444555555666666777777777777777777777778888999998888875
No 280
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=72.19 E-value=14 Score=30.35 Aligned_cols=51 Identities=27% Similarity=0.391 Sum_probs=31.1
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Q 022288 50 KNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSL 102 (299)
Q Consensus 50 K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~L 102 (299)
.--|++.|-+. |=..-..++.+|+.++..|..|+..|+.+.+--|.|+..|
T Consensus 32 HE~KV~~LKks--Ye~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 32 HETKVKALKKS--YEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666432 3345566666677777777777777766666666666544
No 281
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=72.16 E-value=24 Score=36.71 Aligned_cols=34 Identities=12% Similarity=0.177 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCCc
Q 022288 91 EKNDLREEKLSLRSEIENLNIQYQQRVRAMVPWA 124 (299)
Q Consensus 91 EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw~ 124 (299)
++++|+.+...++.++.+++.++.+......|++
T Consensus 263 ~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~ 296 (650)
T TIGR03185 263 EREQLERQLKEIEAARKANRAQLRELAADPLPLL 296 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHh
Confidence 4567777778888888888777777665655554
No 282
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=72.08 E-value=23 Score=38.97 Aligned_cols=115 Identities=19% Similarity=0.261 Sum_probs=0.0
Q ss_pred cccccccchhhhhhccchHHHHHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 022288 6 KNEGEVKDCAATRKMQKADREKLRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEES 85 (299)
Q Consensus 6 r~~~e~~~~~a~Rk~~KAerERrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~ 85 (299)
|+....++....+...| .+||-|= |.=.+.+|++|+ ...| ..++-++|.+|.+-|.-|-.-.....-+.
T Consensus 315 ~d~~~~kd~qk~~n~~k-ta~KVrt--~KYLLgELkaLV----aeq~----DsE~qRLitEvE~cislLPav~g~tniq~ 383 (861)
T PF15254_consen 315 RDAKTVKDVQKAKNPNK-TAEKVRT--LKYLLGELKALV----AEQE----DSEVQRLITEVEACISLLPAVSGSTNIQV 383 (861)
T ss_pred CchhhhHHHHHhhCcch-HHHHHHH--HHHHHHHHHHHH----hccc----hHHHHHHHHHHHHHHHhhhhhhccccchh
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCCccCCCcccc
Q 022288 86 RELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMVPWAAMDHSVMM 132 (299)
Q Consensus 86 ~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw~~~dps~~~ 132 (299)
+--=+ ...||.||+.|+.++.-|++||++|-++.....+.|=++-+
T Consensus 384 EIALA-~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El 429 (861)
T PF15254_consen 384 EIALA-MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLEL 429 (861)
T ss_pred hhHhh-hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhh
No 283
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=71.86 E-value=28 Score=36.89 Aligned_cols=54 Identities=20% Similarity=0.275 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
.|...|+.+...++..+..|.+++..|+.||.........|...+.+|++|+..
T Consensus 15 ~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~ 68 (617)
T PF15070_consen 15 QYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAE 68 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 488999999999999999999999999999999999999999999998866544
No 284
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=71.41 E-value=41 Score=25.46 Aligned_cols=25 Identities=24% Similarity=0.326 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAAL 81 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L 81 (299)
+.+..++.+.|+.++..+..++..+
T Consensus 21 ~~~i~~~~~~L~~~i~~~~~eLr~~ 45 (87)
T PF08700_consen 21 IKEIRQLENKLRQEIEEKDEELRKL 45 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777665543
No 285
>PRK02793 phi X174 lysis protein; Provisional
Probab=71.35 E-value=24 Score=27.39 Aligned_cols=50 Identities=16% Similarity=0.125 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 61 VQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 61 I~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
-..|.+|+.++.-++..++.|.+.+-....+...|+.+...|...+..++
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35677777777777777777777777777777777777666666665543
No 286
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.15 E-value=26 Score=33.58 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQEKNDLR 96 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~EkNELR 96 (299)
+|+.++..+++...+|..|++.+....+..+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555
No 287
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=71.15 E-value=21 Score=29.17 Aligned_cols=38 Identities=26% Similarity=0.195 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 56 ILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKN 93 (299)
Q Consensus 56 IL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkN 93 (299)
|++=+.=-+++++.++++|.++|+.|..|..-...+..
T Consensus 17 i~~y~~~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvk 54 (87)
T PF10883_consen 17 ILAYLWWKVKKAKKQNAKLQKENEQLKTEKAVAETQVK 54 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444566667766777666666666655554443
No 288
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=71.00 E-value=20 Score=37.39 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 84 ESRELTQEKNDLREEKLSLRSEIENLNIQYQQRV 117 (299)
Q Consensus 84 E~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl 117 (299)
+++.|+.|....++....++.++.....++++++
T Consensus 220 e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~ 253 (555)
T TIGR03545 220 EFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADL 253 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444444333333333333333333333333333
No 289
>PRK15396 murein lipoprotein; Provisional
Probab=70.65 E-value=27 Score=27.98 Aligned_cols=48 Identities=13% Similarity=0.313 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
-|.+|..+|+.|..+.+.|..++..++.....-++|-.+--..|+++-
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~ 73 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQA 73 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999988888877776666666553
No 290
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=70.62 E-value=21 Score=27.29 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
..|.+|+.++.-++..++.|...+-....+...|+.+...|...+..++
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677888888888888888888888888888888888888887777765
No 291
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=70.49 E-value=20 Score=38.83 Aligned_cols=49 Identities=35% Similarity=0.530 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH-------HHHHHHHHHHhhhHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELT-------QEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk-------~EkNELRdEns~LksE~e~L~ 110 (299)
..+.+|+...+.|+.+...|.+|+++++ ++..||.+||-.|..++..|.
T Consensus 62 ~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk 117 (717)
T PF09730_consen 62 QLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLK 117 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666554 367788888888888888775
No 292
>PRK11546 zraP zinc resistance protein; Provisional
Probab=70.28 E-value=19 Score=31.75 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=16.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 92 KNDLREEKLSLRSEIENLNIQYQQRVRA 119 (299)
Q Consensus 92 kNELRdEns~LksE~e~L~~qlqqrl~~ 119 (299)
.+.|..|...|+.++..+..++.-+++.
T Consensus 91 I~aL~kEI~~Lr~kL~e~r~~~~~~~~k 118 (143)
T PRK11546 91 INAVAKEMENLRQSLDELRVKRDIAMAE 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555556666555555566655
No 293
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=70.25 E-value=23 Score=33.29 Aligned_cols=49 Identities=27% Similarity=0.400 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 71 VEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRA 119 (299)
Q Consensus 71 Vq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~ 119 (299)
.+.|....+.|..+...|++|..-|..|++.|-++++..+...++.++.
T Consensus 40 ~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~ 88 (228)
T PRK06800 40 HEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKE 88 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666666666666666666655555544443
No 294
>PRK09343 prefoldin subunit beta; Provisional
Probab=70.23 E-value=23 Score=29.73 Aligned_cols=74 Identities=19% Similarity=0.302 Sum_probs=40.9
Q ss_pred HHHHhhhccCCCCC---CCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022288 36 HFTELGNALDPDRP---KNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQ 112 (299)
Q Consensus 36 rF~eLrslLvP~~~---K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~q 112 (299)
-+.+|..+ +++.. -.++.=|..|--+.+++|..+++-++.++ ..|......|+..+.+++.+
T Consensus 43 ~~~EL~~L-~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~i--------------k~lekq~~~l~~~l~e~q~~ 107 (121)
T PRK09343 43 ALEELEKL-PDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRS--------------RTLEKQEKKLREKLKELQAK 107 (121)
T ss_pred HHHHHHcC-CCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 45566654 44432 33444455554555555555555554333 33344445566667777778
Q ss_pred HHHHHHHcCCCc
Q 022288 113 YQQRVRAMVPWA 124 (299)
Q Consensus 113 lqqrl~~~~pw~ 124 (299)
|++-+....+-.
T Consensus 108 l~~ll~~~~~~~ 119 (121)
T PRK09343 108 INEMLSKYYPQG 119 (121)
T ss_pred HHHHHHhcCCCC
Confidence 888887775543
No 295
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=70.14 E-value=57 Score=29.72 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 86 RELTQEKNDLREEKLSLRSEIENLNIQYQQR 116 (299)
Q Consensus 86 ~eLk~EkNELRdEns~LksE~e~L~~qlqqr 116 (299)
........+++.+...|..++..|+..|+..
T Consensus 160 ~~e~kK~~~~~~~~~~l~~ei~~L~~klkEK 190 (194)
T PF15619_consen 160 ASEKKKHKEAQEEVKSLQEEIQRLNQKLKEK 190 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445678888999999999998777654
No 296
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=70.06 E-value=14 Score=37.53 Aligned_cols=88 Identities=24% Similarity=0.268 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCChhhh-HHH--HHHHHHHHHHHHHHHHH-HHh-hhH-----HHHHHHHHHHHH
Q 022288 25 REKLRRDRLNEHFTELGNALDPDRPKNDKATI-LAD--TVQLLKDLTSQVEKLKT-EHA-ALT-----EESRELTQEKND 94 (299)
Q Consensus 25 rERrRRdKLNErF~eLrslLvP~~~K~DKASI-L~D--AI~ylKdLr~qVq~Lk~-en~-~L~-----eE~~eLk~EkNE 94 (299)
.+.++...+.+.+.-|+..+ ..-++.+ -.. |.+.+..-...|+.|+. ... .+. .|..+|+.|..-
T Consensus 211 ~~l~~~~e~~~~l~l~~~~~-----~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~ 285 (511)
T PF09787_consen 211 EYLRESGELQEQLELLKAEG-----ESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDH 285 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHH
Confidence 45666666666666666552 2222222 233 66666666666777776 222 122 235667777777
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHH
Q 022288 95 LREEKLSLRSEIENLNIQYQQRV 117 (299)
Q Consensus 95 LRdEns~LksE~e~L~~qlqqrl 117 (299)
+++|+..|+.+++.|..|+++.-
T Consensus 286 ~~ee~~~l~~Qi~~l~~e~~d~e 308 (511)
T PF09787_consen 286 LQEEIQLLERQIEQLRAELQDLE 308 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777766666654433
No 297
>PRK04863 mukB cell division protein MukB; Provisional
Probab=70.04 E-value=20 Score=41.64 Aligned_cols=93 Identities=17% Similarity=0.201 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHhhhccCCCCC---CCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhH
Q 022288 27 KLRRDRLNEHFTELGNALDPDRP---KNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLR 103 (299)
Q Consensus 27 RrRRdKLNErF~eLrslLvP~~~---K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~Lk 103 (299)
+.++..++.+..+|..+ +-.+. =.|=..+|++.-+..-+|+.+++.++.....+.++.+....+.+....+...++
T Consensus 948 ~~~~~~~~~~~~~l~~~-~~~~~~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slk 1026 (1486)
T PRK04863 948 QQTQRDAKQQAFALTEV-VQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLK 1026 (1486)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHhccHHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556688888888886 45442 457778999999999999999999999999999999999999999999989999
Q ss_pred HHHHHHHHHHHHHHHHc
Q 022288 104 SEIENLNIQYQQRVRAM 120 (299)
Q Consensus 104 sE~e~L~~qlqqrl~~~ 120 (299)
..+..++.+++.....+
T Consensus 1027 sslq~~~e~L~E~eqe~ 1043 (1486)
T PRK04863 1027 SSYDAKRQMLQELKQEL 1043 (1486)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 98888877776665554
No 298
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=70.02 E-value=33 Score=27.69 Aligned_cols=52 Identities=17% Similarity=0.184 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 59 DTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 59 DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
+.|+.-|+|..++..-++|++.|..=+..|+.+.--.-+-+..|..+...++
T Consensus 2 ~Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~ 53 (76)
T PF11544_consen 2 ELIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQ 53 (76)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777777777666666666666666666665
No 299
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=69.69 E-value=41 Score=30.43 Aligned_cols=70 Identities=11% Similarity=0.180 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHhhhHHHHHHHHHHHHHHHHHcCCCcc
Q 022288 56 ILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEK-NDLREEKLSLRSEIENLNIQYQQRVRAMVPWAA 125 (299)
Q Consensus 56 IL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~Ek-NELRdEns~LksE~e~L~~qlqqrl~~~~pw~~ 125 (299)
+++++-+-|.+|..++..|...++.+..++.-++.+. .+++-+...|..++.+|...+.+-.+...++.+
T Consensus 73 ~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~~l~g 143 (157)
T COG3352 73 QLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLRELYG 143 (157)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcC
Confidence 3566666666666666666655555554444443332 223444556666777776666665555555554
No 300
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=69.55 E-value=21 Score=25.43 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLR 103 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~Lk 103 (299)
+.+|..+|..++.....-..++..|+.++=.|+||...+.
T Consensus 8 h~~Ld~~I~~~e~~~~~~d~~l~~LKk~kL~LKDei~~ll 47 (49)
T PF04325_consen 8 HHELDKEIHRLEKRPEPDDEELERLKKEKLRLKDEIYRLL 47 (49)
T ss_dssp HHHHHHHHHHHHTT--S-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555554444344455666666666666665544
No 301
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=69.55 E-value=20 Score=38.10 Aligned_cols=10 Identities=30% Similarity=0.338 Sum_probs=5.0
Q ss_pred HHHHHHHhhh
Q 022288 33 LNEHFTELGN 42 (299)
Q Consensus 33 LNErF~eLrs 42 (299)
|++.+.++..
T Consensus 247 l~e~i~e~ek 256 (581)
T KOG0995|consen 247 LEEMINEREK 256 (581)
T ss_pred HHHHHHHHhc
Confidence 4555555543
No 302
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=69.15 E-value=9.4 Score=38.45 Aligned_cols=33 Identities=21% Similarity=0.174 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022288 58 ADTVQLLKDLTSQVEKLKTEHAALTEESRELTQ 90 (299)
Q Consensus 58 ~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~ 90 (299)
+-.|+..-.||.+..+|++||+.|..|+..|+.
T Consensus 28 ~~~~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~ 60 (420)
T PF07407_consen 28 GVSIDENFALRMENHSLKKENNDLKIEVERLEN 60 (420)
T ss_pred ccchhhhhhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344566666777766666666666666666633
No 303
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=69.11 E-value=34 Score=31.40 Aligned_cols=47 Identities=28% Similarity=0.340 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
++-|-+-...+..+|..|..++..|..|...|+..+..|..++..|.
T Consensus 151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~ 197 (206)
T PF14988_consen 151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQ 197 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666677777777777777777777777777777776665
No 304
>PF14645 Chibby: Chibby family
Probab=69.05 E-value=15 Score=31.04 Aligned_cols=46 Identities=20% Similarity=0.189 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 68 TSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 68 r~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
......|+.+|..|++|++.|+.+..-|-|=.+.-.+|..-++.++
T Consensus 70 ~~~~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l 115 (116)
T PF14645_consen 70 GEENQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKEL 115 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666777777777777777777666666666566655555443
No 305
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=69.01 E-value=34 Score=35.40 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=27.2
Q ss_pred hHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHH-----HHHHHHHHh--hhHHHHHHHHHH
Q 022288 56 ILADTVQL-LKDLTSQVEKLKTEHAALTEESRELTQE-----KNDLREEKL--SLRSEIENLNIQ 112 (299)
Q Consensus 56 IL~DAI~y-lKdLr~qVq~Lk~en~~L~eE~~eLk~E-----kNELRdEns--~LksE~e~L~~q 112 (299)
+-.+||.- +..++.++++|++||..|.+|.-....+ +++++.||. ++..+|.+|+.|
T Consensus 41 a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~~q 105 (459)
T KOG0288|consen 41 AESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELREQ 105 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455543 3444556667777766665543222211 233444443 444555555533
No 306
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.90 E-value=9 Score=42.36 Aligned_cols=38 Identities=26% Similarity=0.346 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 022288 81 LTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVR 118 (299)
Q Consensus 81 L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~ 118 (299)
...|++.|.+++.|++..+..|--|+-.|+.|+.+.-.
T Consensus 484 ~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~ 521 (1118)
T KOG1029|consen 484 MISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQS 521 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 33444555555555555555555555555555544333
No 307
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=68.57 E-value=32 Score=27.76 Aligned_cols=50 Identities=22% Similarity=0.179 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
+|-.+..+|+..+..-++|++.|+.-...||.+....-.--.+|+.+...
T Consensus 2 ~Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~ 51 (76)
T PF11544_consen 2 ELIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLN 51 (76)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777778888888887777887777776666677665543
No 308
>PLN03188 kinesin-12 family protein; Provisional
Probab=68.48 E-value=30 Score=39.90 Aligned_cols=89 Identities=18% Similarity=0.334 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHH-----------HhhhHHHHH-------
Q 022288 25 REKLRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTE-----------HAALTEESR------- 86 (299)
Q Consensus 25 rERrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~e-----------n~~L~eE~~------- 86 (299)
-+|.|| |.|.+.+.... .-||++=|--.++++-|-+++..|+.+ |..|+...+
T Consensus 1127 l~~hr~--i~egi~dvkka-------aakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~ 1197 (1320)
T PLN03188 1127 LARHRR--IQEGIDDVKKA-------AARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQ 1197 (1320)
T ss_pred HHHHHH--HHHHHHHHHHH-------HHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHH
Confidence 355555 56666665544 367777776778888887777766644 444433321
Q ss_pred ----------------HHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHcCC
Q 022288 87 ----------------ELTQE-KNDLREEKLSLRSEIENLNIQYQQRVRAMVP 122 (299)
Q Consensus 87 ----------------eLk~E-kNELRdEns~LksE~e~L~~qlqqrl~~~~p 122 (299)
.+.++ -.+...|+..++.+|++|.....+-+..|..
T Consensus 1198 aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q 1250 (1320)
T PLN03188 1198 AAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQ 1250 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112 2446789999999999999888776666644
No 309
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=68.48 E-value=34 Score=33.80 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcC
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMV 121 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~ 121 (299)
|-|+..|+....+...+....+.+..+-++|.....+-|.|+++++ +||.++.
T Consensus 108 kvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~r----kRle~Lq 160 (338)
T KOG3647|consen 108 KVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTR----KRLEALQ 160 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 3445555555555556666666666666777666666666766664 7777763
No 310
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=68.15 E-value=33 Score=35.89 Aligned_cols=77 Identities=19% Similarity=0.324 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhhcc-CCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 022288 29 RRDRLNEHFTELGNAL-DPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEI 106 (299)
Q Consensus 29 RRdKLNErF~eLrslL-vP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~ 106 (299)
=+..||+.|..|..+. .|+. ..-|..||..|=.++..+...-+.|+.....+..++...-.+.|.|=.+...|-.+|
T Consensus 109 l~~~L~~ff~s~q~la~~P~~-~a~r~~vl~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~V~~vNsLl~qIa~lN~qI 186 (552)
T COG1256 109 LSTLLNDFFNSLQELASNPSD-TAARQAVLSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEVNSLLKQIADLNKQI 186 (552)
T ss_pred HHHHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889888888763 1332 456777888877666666666666655555555555555555555554444444444
No 311
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=68.14 E-value=41 Score=37.81 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=22.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHcCCCccCCCccc
Q 022288 96 REEKLSLRSEIENLNIQYQQRVRAMVPWAAMDHSVM 131 (299)
Q Consensus 96 RdEns~LksE~e~L~~qlqqrl~~~~pw~~~dps~~ 131 (299)
...+...+.++..|+.++.+.|+.. |+|+..+
T Consensus 742 ~~~~~~~~~~~~~le~~~~~eL~~~----GvD~~~I 773 (1201)
T PF12128_consen 742 AAAKQEAKEQLKELEQQYNQELAGK----GVDPERI 773 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC----CCCHHHH
Confidence 3344666777778888888888777 7887544
No 312
>PRK14127 cell division protein GpsB; Provisional
Probab=68.05 E-value=21 Score=30.23 Aligned_cols=25 Identities=20% Similarity=0.533 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 86 RELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 86 ~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
..|..|..+|++|+..|+.++..++
T Consensus 40 e~l~~e~~~Lk~e~~~l~~~l~e~~ 64 (109)
T PRK14127 40 EAFQKEIEELQQENARLKAQVDELT 64 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555554
No 313
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=67.93 E-value=17 Score=34.71 Aligned_cols=8 Identities=38% Similarity=0.252 Sum_probs=3.0
Q ss_pred hhhHHHHH
Q 022288 100 LSLRSEIE 107 (299)
Q Consensus 100 s~LksE~e 107 (299)
..|+.|..
T Consensus 93 ~~l~~EN~ 100 (284)
T COG1792 93 ESLEEENK 100 (284)
T ss_pred HHHHHHHH
Confidence 33333333
No 314
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=67.93 E-value=55 Score=25.34 Aligned_cols=10 Identities=30% Similarity=0.571 Sum_probs=3.9
Q ss_pred hhHHHHHHHH
Q 022288 101 SLRSEIENLN 110 (299)
Q Consensus 101 ~LksE~e~L~ 110 (299)
.|..++..|+
T Consensus 76 ~l~~q~~~l~ 85 (127)
T smart00502 76 VLEQQLESLT 85 (127)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 315
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=67.89 E-value=39 Score=34.10 Aligned_cols=85 Identities=22% Similarity=0.335 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhhccC-CCC-CCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH----HHHH-HHHHHhhhH
Q 022288 31 DRLNEHFTELGNALD-PDR-PKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQ----EKND-LREEKLSLR 103 (299)
Q Consensus 31 dKLNErF~eLrslLv-P~~-~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~----EkNE-LRdEns~Lk 103 (299)
+.|-++|.+|..+|. |.. ...++.--|+.-...|.++-....+++.-.+.|..--.-|.. |..+ .++|...|+
T Consensus 10 ~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~~D~em~ema~~Ei~~~~ 89 (363)
T COG0216 10 ESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKELE 89 (363)
T ss_pred HHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 446678888887762 322 344555555555555555555555555444333332222222 2222 477888888
Q ss_pred HHHHHHHHHHHH
Q 022288 104 SEIENLNIQYQQ 115 (299)
Q Consensus 104 sE~e~L~~qlqq 115 (299)
.++..|+.+|+-
T Consensus 90 ~~~~~le~~L~~ 101 (363)
T COG0216 90 AKIEELEEELKI 101 (363)
T ss_pred HHHHHHHHHHHH
Confidence 999988855543
No 316
>PRK04863 mukB cell division protein MukB; Provisional
Probab=67.85 E-value=30 Score=40.26 Aligned_cols=18 Identities=0% Similarity=-0.134 Sum_probs=6.7
Q ss_pred HHHHhhhHHHHHHHHHHH
Q 022288 96 REEKLSLRSEIENLNIQY 113 (299)
Q Consensus 96 RdEns~LksE~e~L~~ql 113 (299)
..+...++.++..++..+
T Consensus 403 qqel~elQ~el~q~qq~i 420 (1486)
T PRK04863 403 QQALDVQQTRAIQYQQAV 420 (1486)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 317
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=67.72 E-value=12 Score=34.71 Aligned_cols=48 Identities=23% Similarity=0.315 Sum_probs=29.7
Q ss_pred HHHHHHHHHHH----HHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 62 QLLKDLTSQVE----KLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 62 ~ylKdLr~qVq----~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
.|-+.|-++-+ +--++|+.|..++..+..|++.|+.||..|+.-.+-+
T Consensus 107 ~YWk~lAE~RR~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~ 158 (200)
T PF07412_consen 107 NYWKELAEERRKALEEALEENEKLHKEIEQKDEEIAKLKEENEELKELAEHV 158 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666655433 2225666677777777777777777777777655544
No 318
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=67.22 E-value=20 Score=29.87 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=31.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 72 EKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 72 q~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
.+|+......++|..-|++...+|.++|..|..|+.++.
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667778888899999999999999999888765
No 319
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=67.21 E-value=44 Score=25.96 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQEKNDL---REEKLSLRSEIENLNIQYQQRVRA 119 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~EkNEL---RdEns~LksE~e~L~~qlqqrl~~ 119 (299)
+|++++..+......|-.++..+-.+.+.+ +......+...++|..+|+.-+..
T Consensus 30 ~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~~l~~ 86 (102)
T PF14523_consen 30 ELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKEALQE 86 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
No 320
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=67.12 E-value=25 Score=32.77 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 59 DTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 59 DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlq 114 (299)
+|.....+|+.+......+...|..++.++..+...|..+...-..+...|+.++.
T Consensus 58 eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~ 113 (246)
T PF00769_consen 58 EAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELE 113 (246)
T ss_dssp HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555666667777777777777777777777777777766553
No 321
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=67.11 E-value=48 Score=32.77 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=9.4
Q ss_pred HHHHHHhhhccCCCCCCCChhhhH
Q 022288 34 NEHFTELGNALDPDRPKNDKATIL 57 (299)
Q Consensus 34 NErF~eLrslLvP~~~K~DKASIL 57 (299)
|-.|..|..+ |.+|..++
T Consensus 80 N~LlKkl~~l------~keKe~L~ 97 (310)
T PF09755_consen 80 NTLLKKLQQL------KKEKETLA 97 (310)
T ss_pred HHHHHHHHHH------HHHHHHHH
Confidence 5555555554 45555554
No 322
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=67.08 E-value=24 Score=28.40 Aligned_cols=50 Identities=18% Similarity=0.291 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 61 VQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 61 I~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
+=+..+..+-+..|+...+.+..+++.+..+..++..+-..|+.++.+|+
T Consensus 55 vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 55 VLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445566666677777777777777777777777777777777766654
No 323
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=67.06 E-value=13 Score=36.84 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 70 QVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 70 qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlq 114 (299)
+...|++.+..+..+++.|..+..+|+++...++.++.+|+.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (398)
T PTZ00454 16 TERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVK 60 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666666666666666666666665543
No 324
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=67.04 E-value=65 Score=33.70 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELT 89 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk 89 (299)
.+.+|+.++.++..+...++++...|.
T Consensus 383 k~~q~q~k~~k~~kel~~~~E~n~~l~ 409 (493)
T KOG0804|consen 383 KLQQLQTKLKKCQKELKEEREENKKLI 409 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544444444433
No 325
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=66.97 E-value=38 Score=36.46 Aligned_cols=44 Identities=25% Similarity=0.303 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
+|.+.|++..+++..-+..+.+|..+.+++..+.+.|.+|+.++
T Consensus 28 ~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~~ltnel~k~ 71 (732)
T KOG0614|consen 28 QLEEAVQRKDAELRQRQTILEELIKEISKLEGEIAKLTNELDKL 71 (732)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Confidence 44444444444444444444444444444444444444444433
No 326
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=66.92 E-value=59 Score=25.33 Aligned_cols=45 Identities=24% Similarity=0.379 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
.|..+...+...+..|...+.++..+..+|+.....+..+++.|+
T Consensus 23 kLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 23 KLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444445555555555555555554
No 327
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=66.89 E-value=45 Score=31.84 Aligned_cols=76 Identities=22% Similarity=0.345 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhhcc-CCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 022288 31 DRLNEHFTELGNAL-DPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIE 107 (299)
Q Consensus 31 dKLNErF~eLrslL-vP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e 107 (299)
..||+.|..|..+- .|. ...-+..+|..|-.+...+..--..|+........++...-.+.|.|-.+...|-.+|.
T Consensus 107 ~~l~~ff~a~~~ls~~P~-~~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~lN~~I~ 183 (322)
T TIGR02492 107 TYLNNFFNALQELAKNPD-SEALRQAVLESAQALANSFNQTSNELQDLRKGINAEIKSAVTEINSLLKQIASLNKEIQ 183 (322)
T ss_pred HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777776652 222 24456777777766665555555555554445555555555555555555555544443
No 328
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=66.81 E-value=17 Score=35.11 Aligned_cols=45 Identities=29% Similarity=0.394 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLS 101 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~ 101 (299)
|..+-..|...+.++.++++.+..|..+.+....++.+|..+...
T Consensus 230 l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~ 274 (344)
T PF12777_consen 230 LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEE 274 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555444433
No 329
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=66.72 E-value=20 Score=31.38 Aligned_cols=52 Identities=19% Similarity=0.312 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHH-----HHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 58 ADTVQLLKDLTSQVEKLKTEHAALTEES-----RELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 58 ~DAI~ylKdLr~qVq~Lk~en~~L~eE~-----~eLk~EkNELRdEns~LksE~e~L 109 (299)
....+..++|+.|+.+|++|+..+...- -.|+++.|.|.+|...++.+...-
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~ 92 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSE 92 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777776543221 223344444444444444444333
No 330
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=66.54 E-value=38 Score=32.66 Aligned_cols=47 Identities=30% Similarity=0.401 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
+...+.++++.+.+...+.+++..|+.+.++...|+..|+.+++..+
T Consensus 230 l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~ 276 (344)
T PF12777_consen 230 LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETE 276 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444445555555555555555555555555554444
No 331
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=66.52 E-value=40 Score=33.56 Aligned_cols=56 Identities=25% Similarity=0.448 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-------------HHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 60 TVQLLKDLTSQVEKLKTEHAALTEESRELTQ-------------EKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 60 AI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~-------------EkNELRdEns~LksE~e~L~~qlqq 115 (299)
..+.+++|+.++++++.+++.|...+..+.. ....++.....|..++..|+.++.+
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 400 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKE 400 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666555544443 3455666667777777777766553
No 332
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=66.47 E-value=26 Score=30.19 Aligned_cols=48 Identities=31% Similarity=0.371 Sum_probs=22.6
Q ss_pred CChhhhHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 51 NDKATILADTVQ---LLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREE 98 (299)
Q Consensus 51 ~DKASIL~DAI~---ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdE 98 (299)
|||-.|.+...+ -|..|-.++..|++....|-+|...|+.|-..||+.
T Consensus 1 mdKkeiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~R 51 (114)
T COG4467 1 MDKKEIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRER 51 (114)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHH
Confidence 466666543332 233444444444444444455544444444444433
No 333
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=66.34 E-value=33 Score=35.15 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=8.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHH
Q 022288 76 TEHAALTEESRELTQEKNDLR 96 (299)
Q Consensus 76 ~en~~L~eE~~eLk~EkNELR 96 (299)
..+..|..++..++.+.+.|+
T Consensus 309 ~~vesL~~ELe~~K~el~~lk 329 (522)
T PF05701_consen 309 ASVESLRSELEKEKEELERLK 329 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444443
No 334
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=66.23 E-value=21 Score=29.59 Aligned_cols=94 Identities=14% Similarity=0.244 Sum_probs=59.4
Q ss_pred hccchHHHHHHHHHHHHHHHHhhhccCC----CCCCCChhhhHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 19 KMQKADREKLRRDRLNEHFTELGNALDP----DRPKNDKATILAD-TVQLLKDLTSQVEKLKTEHAALTEESRELTQEKN 93 (299)
Q Consensus 19 k~~KAerERrRRdKLNErF~eLrslLvP----~~~K~DKASIL~D-AI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkN 93 (299)
+.+--+.+|..|+ -=|..|...|.. +....+..-+... .+.+++=++-.++=|-...+.|...+..|..+..
T Consensus 14 ~i~~iDvd~i~~~---~Di~~Lq~~i~~vtf~~l~~e~~~~~~dp~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~ 90 (118)
T PF13815_consen 14 LISAIDVDRIVRE---LDIDTLQENIENVTFCDLENEDCQHFVDPNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQ 90 (118)
T ss_pred HHhccCHHHHHhc---cCHHHHHHHHHhcceeccChhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344466777774 333444443211 1122222222322 3567777777888887777888888888888888
Q ss_pred HHHHHHhhhHHHHHHHHHHHHH
Q 022288 94 DLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 94 ELRdEns~LksE~e~L~~qlqq 115 (299)
.+..++..|+..+.++++++..
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~k~ 112 (118)
T PF13815_consen 91 ELQQEIEKLKQKLKKQKEEIKK 112 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888766554
No 335
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=66.17 E-value=63 Score=31.66 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 022288 55 TILADTVQLLKDLTSQVEKLKTEHAALTEES 85 (299)
Q Consensus 55 SIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~ 85 (299)
+-++++-+-|..+...|++|+.++..|..++
T Consensus 74 ~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 74 ANIAKAEESIAAQKRAIEDLQKKIDSLKDQI 104 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333
No 336
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=66.13 E-value=46 Score=38.31 Aligned_cols=79 Identities=24% Similarity=0.370 Sum_probs=37.6
Q ss_pred HHHHHHHHhhhccCCCCCC-CChh-hhHHHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHHH
Q 022288 32 RLNEHFTELGNALDPDRPK-NDKA-TILADTVQLLKDLTSQVEKLKTEH----------AALTEESRELTQEKNDLREEK 99 (299)
Q Consensus 32 KLNErF~eLrslLvP~~~K-~DKA-SIL~DAI~ylKdLr~qVq~Lk~en----------~~L~eE~~eLk~EkNELRdEn 99 (299)
.+++++.+||.. +|.-.. ..|. +=+.+.+..+..|..+|..++... ..+++.+.+++.|.+++.++.
T Consensus 803 ~~ee~~~~lr~~-~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~ 881 (1293)
T KOG0996|consen 803 ELEERVRKLRER-IPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKA 881 (1293)
T ss_pred HHHHHHHHHHHh-hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 366777777765 443211 1111 112333444555555555555431 223444666666666665333
Q ss_pred hhhHHHHHHHHHH
Q 022288 100 LSLRSEIENLNIQ 112 (299)
Q Consensus 100 s~LksE~e~L~~q 112 (299)
.. |++|..|+++
T Consensus 882 ~K-k~~i~~lq~~ 893 (1293)
T KOG0996|consen 882 AK-KARIKELQNK 893 (1293)
T ss_pred hH-HHHHHHHHHH
Confidence 33 4555555443
No 337
>KOG3753 consensus Circadian clock protein period [Signal transduction mechanisms]
Probab=66.02 E-value=9.5 Score=42.51 Aligned_cols=27 Identities=33% Similarity=0.741 Sum_probs=13.6
Q ss_pred CCCCCCCC-CCccCCC--CCCCCCCCCCCC
Q 022288 139 YPVPMPMP-PGAIPMH--PPMQPYPMFGNQ 165 (299)
Q Consensus 139 ~p~pv~~P-~~~ip~H--p~~q~yp~f~~q 165 (299)
||.||+.| .|+.++| |+.++||.|-.-
T Consensus 805 ~p~p~p~pg~g~~aa~gapss~~p~pfp~P 834 (1114)
T KOG3753|consen 805 FPLPVPGPGAGPAAAPGAPSSVPPPPFPAP 834 (1114)
T ss_pred CCCCCCCCCCCccCCCCCccCCCCCCCCcc
Confidence 44444444 2334444 566777666543
No 338
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=65.62 E-value=37 Score=33.52 Aligned_cols=50 Identities=28% Similarity=0.385 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHH---HHHHHHHHHHHHhhhHHHHHHHH
Q 022288 61 VQLLKDLTSQVEKLKTEHAALTEESRE---LTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 61 I~ylKdLr~qVq~Lk~en~~L~eE~~e---Lk~EkNELRdEns~LksE~e~L~ 110 (299)
-+|++.|+.++++|+.+++.|.+.... .+..+.+|.+...++..++..++
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~ 293 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAE 293 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777766665433 33344455555556666665554
No 339
>PRK14127 cell division protein GpsB; Provisional
Probab=65.59 E-value=13 Score=31.32 Aligned_cols=38 Identities=26% Similarity=0.455 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 56 ILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKN 93 (299)
Q Consensus 56 IL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkN 93 (299)
.|.+.|.-+..|..++.+|++++..|.+++.++.....
T Consensus 31 FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 31 FLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444444444555555555444444444444443
No 340
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=65.28 E-value=40 Score=36.44 Aligned_cols=17 Identities=35% Similarity=0.429 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhhhHHHH
Q 022288 90 QEKNDLREEKLSLRSEI 106 (299)
Q Consensus 90 ~EkNELRdEns~LksE~ 106 (299)
..+++|+.+...|+.++
T Consensus 548 ~~~~~l~~~~~~l~~~~ 564 (782)
T PRK00409 548 KLKEELEEKKEKLQEEE 564 (782)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 341
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=65.14 E-value=8.1 Score=38.80 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=11.4
Q ss_pred ChhhhHHHHHHHHHHHHH
Q 022288 52 DKATILADTVQLLKDLTS 69 (299)
Q Consensus 52 DKASIL~DAI~ylKdLr~ 69 (299)
..-+++.|+=.|+++++.
T Consensus 101 gdts~~iD~EAs~~e~~D 118 (405)
T KOG2010|consen 101 GDTSSLIDPEASLSELRD 118 (405)
T ss_pred CCcccccChHHHHHHHhh
Confidence 334556677777777766
No 342
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=64.97 E-value=39 Score=26.59 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHH------HHHHHHHHHhhhHHHHHHHHHHH
Q 022288 67 LTSQVEKLKTEHAALTEESRELTQ------EKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 67 Lr~qVq~Lk~en~~L~eE~~eLk~------EkNELRdEns~LksE~e~L~~ql 113 (299)
++-++.+|+++.+.+..-++.+-+ ...-++..+..||.++-+||.|+
T Consensus 9 irl~~arLrqeH~D~DaaInAmi~~~cD~L~iqRmKkKKLAlKDki~~lED~i 61 (67)
T COG5481 9 IRLTLARLRQEHADFDAAINAMIATGCDALRIQRMKKKKLALKDKITKLEDQI 61 (67)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhCCcHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 444555555555555444444332 23345667778888888888664
No 343
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=64.88 E-value=37 Score=33.94 Aligned_cols=52 Identities=19% Similarity=0.367 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQE----KNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~E----kNELRdEns~LksE~e~L~~qlqq 115 (299)
.++|+.+++.|+.+...+..++..++.. ..+|+++...|+.++..|+.++..
T Consensus 39 ~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 94 (418)
T TIGR00414 39 RKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKA 94 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666554322 457788888899999888877643
No 344
>PRK00295 hypothetical protein; Provisional
Probab=64.82 E-value=48 Score=25.48 Aligned_cols=48 Identities=17% Similarity=0.096 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
.|.+|+.++.-++..++.|...+-...++...|+.+...|...+..++
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 477888888888888888888887777888888877777766666553
No 345
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=64.81 E-value=31 Score=38.92 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=13.7
Q ss_pred CCChhhhHHHHHHHHHHHHHHHH
Q 022288 50 KNDKATILADTVQLLKDLTSQVE 72 (299)
Q Consensus 50 K~DKASIL~DAI~ylKdLr~qVq 72 (299)
|+-|..+|.|=+.-|-.|+..+.
T Consensus 399 kl~K~~llKd~~~EIerLK~dl~ 421 (1041)
T KOG0243|consen 399 KLMKKTLLKDLYEEIERLKRDLA 421 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666655555555443
No 346
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=64.72 E-value=63 Score=31.17 Aligned_cols=73 Identities=22% Similarity=0.317 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhhccCCCCCC-CChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHhhhHHH
Q 022288 31 DRLNEHFTELGNALDPDRPK-NDKATILADTVQLLKDLTSQVEKLKTEHAALTEESR----ELTQEKNDLREEKLSLRSE 105 (299)
Q Consensus 31 dKLNErF~eLrslLvP~~~K-~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~----eLk~EkNELRdEns~LksE 105 (299)
+.|++.-..++.+ +|...+ ..|.++|+. +++.+...++++-....++..+++ .|....++|+..+..|...
T Consensus 49 ~~L~~L~~~~~~~-dp~~~~~~~~~~~l~k---lf~k~~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l 124 (333)
T PF05816_consen 49 ELLNELRKEMDEL-DPSELKDEKKKGFLGK---LFGKAKNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQL 124 (333)
T ss_pred HHHHHHHHHHHhC-ChhhhhhhhhhhHHHH---hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777775 887643 345677776 333333344444333333333332 2333344444444444444
Q ss_pred HH
Q 022288 106 IE 107 (299)
Q Consensus 106 ~e 107 (299)
.+
T Consensus 125 ~~ 126 (333)
T PF05816_consen 125 YE 126 (333)
T ss_pred HH
Confidence 43
No 347
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=64.67 E-value=37 Score=34.00 Aligned_cols=53 Identities=25% Similarity=0.393 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEK---NDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~Ek---NELRdEns~LksE~e~L~~qlq 114 (299)
.-.++|+.+++.|+.+...+..++..++..+ .+|..|...|+.++..|+.++.
T Consensus 35 ~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 90 (425)
T PRK05431 35 EERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELD 90 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666666666666666544332 3688888888888888887764
No 348
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=64.65 E-value=43 Score=26.99 Aligned_cols=32 Identities=19% Similarity=0.428 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLR 96 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELR 96 (299)
.+|..+++.|......|.++.+....+.+.|.
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le 66 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLE 66 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Confidence 33444444444444444444444444444433
No 349
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=64.60 E-value=1.1e+02 Score=27.80 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=34.6
Q ss_pred HHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 022288 32 RLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIE 107 (299)
Q Consensus 32 KLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e 107 (299)
.+++|...-...|- .+.-.+-..|+.-.+....++..|+.+...+...+..|+....+|+.+...+++...
T Consensus 67 ~~~~~~~~A~~Al~-----~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 67 QVADWQEKAELALS-----KGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554444432 222334445655555555555555555555555555554444444444444444444
No 350
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=64.58 E-value=24 Score=39.95 Aligned_cols=51 Identities=24% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 67 LTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRV 117 (299)
Q Consensus 67 Lr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl 117 (299)
|..++..|++.+..|+.|.++=....-+||.|...|++++++|+++.+..+
T Consensus 175 L~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l 225 (1195)
T KOG4643|consen 175 LEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFL 225 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 351
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=64.22 E-value=61 Score=24.57 Aligned_cols=59 Identities=20% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-----HHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELT-----QEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk-----~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
|+.+...+.....++..|......+...+.... .+...++.-...|...|..++.++..
T Consensus 7 l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~ 70 (123)
T PF02050_consen 7 LAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELER 70 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 352
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=64.19 E-value=15 Score=28.49 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 82 TEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 82 ~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
.+|++.|+..+.+|.+.|..|+.|-..|
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~L 40 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLL 40 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555554443
No 353
>PRK01156 chromosome segregation protein; Provisional
Probab=64.16 E-value=70 Score=34.24 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSL 102 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~L 102 (299)
+.+.-..+..|+.++..|+.....|..++..+..+.+.|+.+...+
T Consensus 676 ~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~ 721 (895)
T PRK01156 676 INDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDI 721 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444444455555555555555555555555555444444444333
No 354
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=64.10 E-value=6.8 Score=38.74 Aligned_cols=30 Identities=30% Similarity=0.416 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022288 61 VQLLKDLTSQVEKLKTEHAALTEESRELTQ 90 (299)
Q Consensus 61 I~ylKdLr~qVq~Lk~en~~L~eE~~eLk~ 90 (299)
-+|||=|+.+|.-|+..|.+|-||++.|+.
T Consensus 311 KEYVKCLENRVAVLENQNKaLIEELKtLKe 340 (348)
T KOG3584|consen 311 KEYVKCLENRVAVLENQNKALIEELKTLKE 340 (348)
T ss_pred hHHHHHHHhHHHHHhcccHHHHHHHHHHHH
Confidence 489999999999999999999999888864
No 355
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=63.97 E-value=37 Score=30.94 Aligned_cols=18 Identities=39% Similarity=0.440 Sum_probs=8.5
Q ss_pred HHHHHhhhHHHHHHHHHH
Q 022288 95 LREEKLSLRSEIENLNIQ 112 (299)
Q Consensus 95 LRdEns~LksE~e~L~~q 112 (299)
||..-.-|..|+++.+++
T Consensus 149 LrnKa~~L~~eL~~F~~~ 166 (171)
T PF04799_consen 149 LRNKANWLESELERFQEQ 166 (171)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444455555544443
No 356
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=63.82 E-value=30 Score=34.21 Aligned_cols=41 Identities=27% Similarity=0.388 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSE 105 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE 105 (299)
.+|+..+..|+.++..|..++...+.....|.+|+..|+..
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~ 63 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREA 63 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444333
No 357
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=63.77 E-value=27 Score=27.83 Aligned_cols=31 Identities=26% Similarity=0.503 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQ 90 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~ 90 (299)
+.+|++++++ ++..|++..+.+..++..++.
T Consensus 75 ~~eA~~~l~~---r~~~l~~~~~~l~~~~~~~~~ 105 (120)
T PF02996_consen 75 LEEAIEFLKK---RIKELEEQLEKLEKELAELQA 105 (120)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 5677776554 444444444333333333333
No 358
>PRK14161 heat shock protein GrpE; Provisional
Probab=63.76 E-value=36 Score=30.74 Aligned_cols=45 Identities=20% Similarity=0.270 Sum_probs=22.4
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 52 DKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLR 96 (299)
Q Consensus 52 DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELR 96 (299)
...+|.+-+-+.|.-++++++.|+++++.+....-.+.+|...+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~r 53 (178)
T PRK14161 9 NEQTINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTR 53 (178)
T ss_pred cHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455444444555555555555555555544444444444443
No 359
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=63.75 E-value=35 Score=31.88 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=7.4
Q ss_pred HHHHHhhhHHHHHHHHHHHH
Q 022288 95 LREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 95 LRdEns~LksE~e~L~~qlq 114 (299)
|..+...+..++.+|+.+.+
T Consensus 80 Le~e~~e~~~~i~~l~ee~~ 99 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESE 99 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444333
No 360
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=63.72 E-value=63 Score=26.14 Aligned_cols=43 Identities=23% Similarity=0.441 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCC
Q 022288 79 AALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMVP 122 (299)
Q Consensus 79 ~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~p 122 (299)
.....++..|+.+...|+.++..|...+..+. .|+..|..+.|
T Consensus 77 ~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~-~Y~~fL~~v~~ 119 (126)
T PF13863_consen 77 EEKEAEIKKLKAELEELKSEISKLEEKLEEYK-KYEEFLEKVVP 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcc
Confidence 34555666666666666666666666666654 56666666543
No 361
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=63.54 E-value=94 Score=26.93 Aligned_cols=61 Identities=15% Similarity=0.272 Sum_probs=27.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-----HHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 53 KATILADTVQLLKDLTSQVEKLKTEHAALTEESR-----ELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 53 KASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~-----eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
|.-++.+--.-+..|..+.+.|+-+...+..+.. .+..=...+..|++.+...+..|..|+
T Consensus 18 K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql 83 (131)
T PF11068_consen 18 KEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQL 83 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555555555544444433332 222222334445555555555555444
No 362
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=63.47 E-value=73 Score=30.82 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 61 VQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 61 I~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
..-++.|..+...++...+.....+-++..|+..+..+...++..+++|++-|++
T Consensus 250 ~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRa 304 (309)
T PF09728_consen 250 SKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRA 304 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555556677778888888888888888888765543
No 363
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=63.42 E-value=12 Score=36.46 Aligned_cols=52 Identities=27% Similarity=0.305 Sum_probs=40.5
Q ss_pred hhhccchHHHHHHHHHHHHHHHHhhhccCCCCC---CCChhhhHHHHHHHHHHHHH
Q 022288 17 TRKMQKADREKLRRDRLNEHFTELGNALDPDRP---KNDKATILADTVQLLKDLTS 69 (299)
Q Consensus 17 ~Rk~~KAerERrRRdKLNErF~eLrslLvP~~~---K~DKASIL~DAI~ylKdLr~ 69 (299)
.|+..-..+||+|=..||..|..||.+ +|... |..|-.-|.-|-.||--|-.
T Consensus 173 ~rr~aanarErrrm~gLN~AfD~Lr~v-~p~~~~d~~LSkyetLqmaq~yi~~l~~ 227 (285)
T KOG4395|consen 173 HRRLAANARERRRMNGLNSAFDRLRLV-VPDGDSDKKLSKYETLQMAQGYILALGC 227 (285)
T ss_pred hhhcccchHHHHHhhhHHHHHHHHHHh-cCCCCccchhhhhhHHHHHHHHHhhhHH
Confidence 455555679999999999999999987 67653 77788888888777776543
No 364
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=63.37 E-value=37 Score=30.75 Aligned_cols=56 Identities=18% Similarity=0.242 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKL-SLRSEIENLNIQYQQRV 117 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns-~LksE~e~L~~qlqqrl 117 (299)
.-+.+.++++++|+..+..|......|.++.|-+++++. .++..++.|..|+..-.
T Consensus 72 k~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~ 128 (157)
T COG3352 72 KQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELK 128 (157)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 456677889999999999999999999999999999984 66667888887766533
No 365
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=63.37 E-value=43 Score=27.19 Aligned_cols=47 Identities=15% Similarity=0.329 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
+.+|-..|+.|....+.|+.+++.++.++..-++|+.+-..++++.-
T Consensus 27 ~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn~a 73 (78)
T COG4238 27 IDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDNQA 73 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 45666677777777777777777777777777777777777666543
No 366
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=63.28 E-value=22 Score=40.14 Aligned_cols=57 Identities=26% Similarity=0.352 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
.+....++++|+.+++.++.++..|+......-+.+..|+.++++|+.+|+.+...|
T Consensus 443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el 499 (1041)
T KOG0243|consen 443 KKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKEL 499 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666677777777777777766666666667777777777777777766554
No 367
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=63.18 E-value=61 Score=28.96 Aligned_cols=55 Identities=18% Similarity=0.321 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 56 ILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 56 IL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
||.++|..|..=+.+|=..-+ ....|...++.|..+++.+....=.+.++|+...
T Consensus 3 Ii~~ti~~ie~sK~qIf~I~E---~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~e 57 (159)
T PF05384_consen 3 IIKKTIDTIESSKEQIFEIAE---QARQEYERLRKELEEVKEEVSEVIEEVDKLEKRE 57 (159)
T ss_pred HHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888877777655443 3455666677777777777777777777766544
No 368
>PLN02678 seryl-tRNA synthetase
Probab=63.15 E-value=43 Score=34.21 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQ---EKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~---EkNELRdEns~LksE~e~L~~qlqq 115 (299)
++|+.+++.|+.+...+..++..++. +..+|..+-..|+.++..|+.+++.
T Consensus 43 r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~ 96 (448)
T PLN02678 43 RQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQE 96 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555544332 3456777778888888888877643
No 369
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=63.14 E-value=58 Score=33.02 Aligned_cols=49 Identities=31% Similarity=0.342 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 69 SQVEKLKTEHAALTEESRELTQEKN-DLREEKLSLRSEIENLNIQYQQRV 117 (299)
Q Consensus 69 ~qVq~Lk~en~~L~eE~~eLk~EkN-ELRdEns~LksE~e~L~~qlqqrl 117 (299)
.++..|+.++..+++.+.|.--|+. ++.|-....++-|.+||.|-+|+.
T Consensus 276 ~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE~~~~Qq~ 325 (395)
T PF10267_consen 276 NEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLEQQQQQQV 325 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3455556666666666666655543 345555788888999994444444
No 370
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=62.89 E-value=38 Score=25.97 Aligned_cols=41 Identities=15% Similarity=0.271 Sum_probs=21.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 74 LKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 74 Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlq 114 (299)
+.+++.........+.....+-...|..|..+|.+|+.++.
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555555556666666666665553
No 371
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=62.78 E-value=48 Score=25.23 Aligned_cols=46 Identities=13% Similarity=0.314 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
.++++++.+++...+.++++++.|..--..+..+...+..++++|.
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666655555555544444333333333333444444443
No 372
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=62.62 E-value=15 Score=35.02 Aligned_cols=32 Identities=47% Similarity=0.530 Sum_probs=13.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 78 HAALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 78 n~~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
++.|+++.+++..|.++++.|...++.+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (364)
T TIGR01242 8 IRKLEDEKRSLEKEKIRLERELERLRSEIERL 39 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433
No 373
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=62.59 E-value=40 Score=26.44 Aligned_cols=42 Identities=29% Similarity=0.300 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 68 TSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 68 r~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
..+...+..++..++.+.+.|..|.+.|+-|.+.|.+ .++++
T Consensus 34 ~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~-~~rIe 75 (97)
T PF04999_consen 34 RHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSS-PSRIE 75 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-HHHHH
Confidence 3344444445555555555555555555555555543 34443
No 374
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=62.55 E-value=43 Score=30.22 Aligned_cols=28 Identities=32% Similarity=0.462 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 67 LTSQVEKLKTEHAALTEESRELTQEKND 94 (299)
Q Consensus 67 Lr~qVq~Lk~en~~L~eE~~eLk~EkNE 94 (299)
|+++++.....|+.|.+++.-|+.+...
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWER 113 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444333
No 375
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=62.32 E-value=82 Score=25.44 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 84 ESRELTQEKNDLREEKLSLRSEIENLNIQYQQR 116 (299)
Q Consensus 84 E~~eLk~EkNELRdEns~LksE~e~L~~qlqqr 116 (299)
.......|...|+.+...|++++.+++.+++.-
T Consensus 75 ~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 75 KKEEKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666788888999999999999888665543
No 376
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=62.22 E-value=78 Score=27.01 Aligned_cols=59 Identities=20% Similarity=0.353 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHH--hhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLK--TEH--AALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk--~en--~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
.+.-|+.+.+|-.+|+.-+ +-- ..|..+.+.-..+...|.......+.|++||+.||+-
T Consensus 43 v~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq~~I~Ek~~eLERl~~E~~s 105 (120)
T PF14931_consen 43 VKGFIEILDELAKRVENEKLKAIGARNLLKSEAKQREAQQQQLQALIAEKKMELERLRSEYES 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555333 211 1244444444444555555555555666666655543
No 377
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=62.17 E-value=1.5e+02 Score=28.93 Aligned_cols=84 Identities=20% Similarity=0.337 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HH--HHHHhh
Q 022288 26 EKLRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKN--DL--REEKLS 101 (299)
Q Consensus 26 ERrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkN--EL--RdEns~ 101 (299)
=|.||++|-+.+..|... .|...| |..|+.++-+++.++...+.++..+++++= -+ +=.-..
T Consensus 143 ~R~~r~~l~d~I~kLk~k-~P~s~k-------------l~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~ 208 (271)
T PF13805_consen 143 SRDRRRKLQDEIAKLKYK-DPQSPK-------------LVVLEQELVRAEAENLVAEAQLSNIKRQKLKEAYSLKFDALI 208 (271)
T ss_dssp HHHHHHHHHHHHHHHHHH--TTTTT-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHhc-CCCChH-------------HHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 378899999999999986 775433 567888888888887777777777776631 11 212222
Q ss_pred hHHHHHHHHHHHHHHHHHcCCC
Q 022288 102 LRSEIENLNIQYQQRVRAMVPW 123 (299)
Q Consensus 102 LksE~e~L~~qlqqrl~~~~pw 123 (299)
-.+||.-|=.++-.+|-...|-
T Consensus 209 E~aEK~~Ila~~gk~Ll~lldd 230 (271)
T PF13805_consen 209 ERAEKQAILAEYGKRLLELLDD 230 (271)
T ss_dssp HHHHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHHHHHHHHHHhccC
Confidence 3344545555555556555433
No 378
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=62.07 E-value=68 Score=29.06 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNI 111 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ 111 (299)
..+..|..++..++.....|...+..|+.+..+++.....|.......+.
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a 148 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASS 148 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666666666666666666666666555554443
No 379
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=62.01 E-value=66 Score=27.74 Aligned_cols=63 Identities=24% Similarity=0.283 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCC
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESREL----TQEKNDLREEKLSLRSEIENLNIQYQQRVRAMVPW 123 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eL----k~EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw 123 (299)
++.-.+-+..|.++|++|++...+-+..+..- -+..+||-++...|++.+..|+ ..++.|.|-
T Consensus 3 ~a~~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk----~dVsemKpV 69 (112)
T PF07439_consen 3 DAGLHQQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLK----ADVSEMKPV 69 (112)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHH----hhHHhccch
Confidence 44445666777777777777666555554433 3456778888888888887776 666777653
No 380
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=61.97 E-value=28 Score=34.03 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLR 103 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~Lk 103 (299)
++++|+.+++.|+..+..|..+.+.++.+..++++++..|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 9 RNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455555555555555555555555555555554443
No 381
>PF10351 Apt1: Golgi-body localisation protein domain; InterPro: IPR019443 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This domain is found in fungi, metazoans and plants. These include FMP27 and "maize" protein APT1 and Arabidopsis homologues SABRE and KIP. APT1 is required for pollen tube growth. It is a Golgi-localised protein and appears to regulate vesicular trafficking []. SABRE and KIP are APT1 homologues and they are involved in the elongation of root cortex cells and pollen tubes respectively.
Probab=61.96 E-value=85 Score=31.20 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH----HHHHHHHHHHHhhhHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESREL----TQEKNDLREEKLSLRSEI 106 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eL----k~EkNELRdEns~LksE~ 106 (299)
|.+....|..|+.++..|......+......| ..+..+++.|+.....|+
T Consensus 92 l~~~~~~V~~LQ~~ir~l~~~~~~~~~~~~~L~~~~~~~~~~l~~e~~~~~~eL 145 (457)
T PF10351_consen 92 LEGLDDRVVSLQNRIRQLIEIERELEFRDKLLDDEGREDLLELRKELQRCSLEL 145 (457)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888888888887666665555444 333344444444444443
No 382
>PF12938 M_domain: M domain of GW182
Probab=61.92 E-value=32 Score=32.79 Aligned_cols=57 Identities=23% Similarity=0.349 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 59 DTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 59 DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
.+.-.|++|..+|.+|+..-..|..-....+.+...|--+.+.+|.||..|++|+-.
T Consensus 147 qtL~LLnQLLq~I~~Lq~~Q~~L~~~~~~~~~~~~q~~~~I~~~kqqI~~lqnQIa~ 203 (235)
T PF12938_consen 147 QTLTLLNQLLQQIKRLQQQQQNLQRQGNASGQEEQQLAVQINKTKQQIQQLQNQIAA 203 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888887776544454433333445555566667777888888777764
No 383
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=61.92 E-value=65 Score=24.12 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=9.7
Q ss_pred HHHHhhhHHHHHHHHHHH
Q 022288 96 REEKLSLRSEIENLNIQY 113 (299)
Q Consensus 96 RdEns~LksE~e~L~~ql 113 (299)
|.....+..++++|+..|
T Consensus 45 r~kl~~~~~~~~~l~~~l 62 (66)
T PF10458_consen 45 REKLEELEEELEKLEEAL 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455666666665433
No 384
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=61.90 E-value=29 Score=34.10 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 80 ALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 80 ~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
+-..|-+.|.-|..+|..+|..||.+...|+.+++-
T Consensus 245 KkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~y 280 (294)
T KOG4571|consen 245 KKRAEKEALLGELEGLEKRNEELKDQASELEREIRY 280 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788899999999999999999999988763
No 385
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=61.70 E-value=2.5 Score=34.97 Aligned_cols=41 Identities=32% Similarity=0.377 Sum_probs=0.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 74 LKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 74 Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlq 114 (299)
|+.+.-.+..++..|..+.+.|+.|...|+.++..|+.+..
T Consensus 4 Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~ 44 (118)
T PF08286_consen 4 LDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQEV 44 (118)
T ss_dssp ---------------------------------------HT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444444444445555555555555555555554433
No 386
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=61.70 E-value=7.2 Score=31.55 Aligned_cols=44 Identities=25% Similarity=0.351 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 022288 56 ILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEK 99 (299)
Q Consensus 56 IL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEn 99 (299)
.|...+..+..|..++..|+.++..|..++..++.....|+...
T Consensus 26 fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 26 FLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 45666666666667777777777666666666665555555443
No 387
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=61.59 E-value=23 Score=36.25 Aligned_cols=48 Identities=10% Similarity=0.122 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhH
Q 022288 55 TILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLR 103 (299)
Q Consensus 55 SIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~Lk 103 (299)
.||.+.+. +.+|+.+.+.+..+...+..+.++++.+..++..+...|+
T Consensus 148 ~lLD~~~~-~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~ 195 (563)
T TIGR00634 148 QLLDTFAG-ANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQ 195 (563)
T ss_pred HHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33444333 3344444444444444444444443333333333333333
No 388
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=61.47 E-value=37 Score=31.63 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 54 ATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQR 116 (299)
Q Consensus 54 ASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqr 116 (299)
..++.|.-+.|.....+|+.|++.|..|+++.++|+-.+.-|-+ .+.|..+ |..+-|.+
T Consensus 40 g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDd--dRqKgrk--larEWQrF 98 (195)
T PF10226_consen 40 GRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDD--DRQKGRK--LAREWQRF 98 (195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccch--hHHHhHH--HhHHHHHh
No 389
>PRK00736 hypothetical protein; Provisional
Probab=61.43 E-value=53 Score=25.22 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
..|.+|+.++.-++..++.|...+-.-..+...|+.+...|...+..++
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577788888877777777777777777777777766666666655443
No 390
>PF15215 FDC-SP: Follicular dendritic cell secreted peptide
Probab=61.32 E-value=18 Score=28.49 Aligned_cols=10 Identities=40% Similarity=0.521 Sum_probs=6.8
Q ss_pred CCCCCCCCCC
Q 022288 156 MQPYPMFGNQ 165 (299)
Q Consensus 156 ~q~yp~f~~q 165 (299)
.|-||.|++-
T Consensus 41 ~~~yPw~~~~ 50 (67)
T PF15215_consen 41 NQRYPWFYRY 50 (67)
T ss_pred cCCCchhhhc
Confidence 4677777765
No 391
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=61.31 E-value=1.7e+02 Score=31.42 Aligned_cols=8 Identities=38% Similarity=0.659 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 022288 103 RSEIENLN 110 (299)
Q Consensus 103 ksE~e~L~ 110 (299)
+.||.-|.
T Consensus 160 ~~Eir~Lr 167 (582)
T PF03276_consen 160 QREIRDLR 167 (582)
T ss_pred HHHHHHHH
Confidence 33333333
No 392
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=61.31 E-value=36 Score=27.15 Aligned_cols=46 Identities=24% Similarity=0.322 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
+.+.+.++-|+.....|.+.++.+..+..+++++...+...+.++.
T Consensus 73 ~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 118 (120)
T PF02996_consen 73 MSLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLY 118 (120)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566667777777777777777777777777766666666666654
No 393
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=61.30 E-value=51 Score=25.79 Aligned_cols=56 Identities=21% Similarity=0.366 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHH--HHHHHHHHHHHHHc
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEI--ENLNIQYQQRVRAM 120 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~--e~L~~qlqqrl~~~ 120 (299)
++|+..|++|+..|+.|..-.++-+++..+|-.....-.++. .+|..+|+.|+.-.
T Consensus 1 erL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~alrlal~ys~r~~e~ 58 (67)
T PF10506_consen 1 ERLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATALRLALKYSERCKEA 58 (67)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 468899999999999888877777777666533222222221 16666677776543
No 394
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.28 E-value=38 Score=32.53 Aligned_cols=29 Identities=24% Similarity=0.349 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 61 VQLLKDLTSQVEKLKTEHAALTEESRELT 89 (299)
Q Consensus 61 I~ylKdLr~qVq~Lk~en~~L~eE~~eLk 89 (299)
...++.+++++..|..+...++..++.++
T Consensus 56 ~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 56 VKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555
No 395
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=61.03 E-value=77 Score=32.18 Aligned_cols=76 Identities=18% Similarity=0.259 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHH
Q 022288 24 DREKLRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKD-LTSQVEKLKTEHAALTEESRELTQEKNDL----REE 98 (299)
Q Consensus 24 erERrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKd-Lr~qVq~Lk~en~~L~eE~~eLk~EkNEL----RdE 98 (299)
......+..+...+.+|+.+ + .....|.+.|+-||. ++.+++-+.+....-....+-|..+.|++ ++|
T Consensus 205 ~~~~~~~~~l~~~~~el~ei------k-~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~E 277 (395)
T PF10267_consen 205 SVSSQQNLGLQKILEELREI------K-ESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNE 277 (395)
T ss_pred cccccccchHHHHHHHHHHH------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777765 1 334456666666664 44443332222211111222333333332 567
Q ss_pred HhhhHHHH
Q 022288 99 KLSLRSEI 106 (299)
Q Consensus 99 ns~LksE~ 106 (299)
...||.++
T Consensus 278 i~~LKqeL 285 (395)
T PF10267_consen 278 IYNLKQEL 285 (395)
T ss_pred HHHHHHHH
Confidence 77777777
No 396
>PRK14160 heat shock protein GrpE; Provisional
Probab=60.99 E-value=42 Score=31.30 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHH
Q 022288 87 ELTQEKNDLREEKLSLRSEIE 107 (299)
Q Consensus 87 eLk~EkNELRdEns~LksE~e 107 (299)
.|..+..+|++...++.++.+
T Consensus 72 ~l~~e~~elkd~~lR~~Aefe 92 (211)
T PRK14160 72 KLENELEALKDRLLRTVAEYD 92 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444443
No 397
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=60.98 E-value=33 Score=36.24 Aligned_cols=57 Identities=25% Similarity=0.244 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEK----LSLRSEIENLNIQYQQR 116 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEn----s~LksE~e~L~~qlqqr 116 (299)
|.++|.-++.+. .+|..+++.++.+.-+.-.+.+.+++++ ...+.|+++|+.+|++-
T Consensus 485 Lee~i~~~~~~i---~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~l 545 (622)
T COG5185 485 LEEDIKNLKHDI---NELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDL 545 (622)
T ss_pred HHHHhhhHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 555555554443 3344444555555555555555555544 45678899999988763
No 398
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=60.93 E-value=21 Score=39.70 Aligned_cols=60 Identities=22% Similarity=0.243 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 59 DTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 59 DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
-.+..+..|+.+++.|+.++..+. -+++..|.|.|+.|+-.|...++.|.++.+.+...+
T Consensus 327 ~~~~~~~~lK~ql~~l~~ell~~~--~~~~~~ei~sl~~e~~~l~~~~d~~~~e~~e~~s~~ 386 (913)
T KOG0244|consen 327 PKSFEMLKLKAQLEPLQVELLSKA--GDELDAEINSLPFENVTLEETLDALLQEKGEERSTL 386 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc--cccchhHHhhhhhhhhhhhhhHHHHhcchhhhhhhh
Confidence 345667777888888877765443 233677888889999999999998888888777665
No 399
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=60.87 E-value=78 Score=24.71 Aligned_cols=88 Identities=17% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhccCCCCCCCCh--------hhhHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHH
Q 022288 31 DRLNEHFTELGNALDPDRPKNDK--------ATILADTVQLLKDLTSQVEKLKTEHAALTE----ESRELTQEKNDLREE 98 (299)
Q Consensus 31 dKLNErF~eLrslLvP~~~K~DK--------ASIL~DAI~ylKdLr~qVq~Lk~en~~L~e----E~~eLk~EkNELRdE 98 (299)
.+||.....|+.+..-.....|. -.+..++-...++++..+..|+..+..... +.+..+...+-|..+
T Consensus 18 ~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~~~q~~~L~~~ 97 (117)
T smart00503 18 QKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTRKAQTEKLRKK 97 (117)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHHHHHHHHHHHH
Q ss_pred HhhhHHHHHHHHHHHHHHHH
Q 022288 99 KLSLRSEIENLNIQYQQRVR 118 (299)
Q Consensus 99 ns~LksE~e~L~~qlqqrl~ 118 (299)
-..+-.+--.+|..|+.+.+
T Consensus 98 f~~~m~~fq~~Q~~~~~~~k 117 (117)
T smart00503 98 FKEVMNEFQRLQRKYREREK 117 (117)
T ss_pred HHHHHHHHHHHHHHHHHHcC
No 400
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=60.76 E-value=30 Score=27.18 Aligned_cols=39 Identities=26% Similarity=0.339 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 82 TEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 82 ~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
.+.+.++-.+--+|+.++..|+.++.+++..+.+.-+++
T Consensus 35 ~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 35 PESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555666677777777777777776666655543
No 401
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=60.75 E-value=25 Score=31.12 Aligned_cols=62 Identities=13% Similarity=0.256 Sum_probs=47.3
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 58 ADTVQLL----KDLTSQVEKLKTEHA----ALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRA 119 (299)
Q Consensus 58 ~DAI~yl----KdLr~qVq~Lk~en~----~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~ 119 (299)
-.+|-+| -+|+.++.-|++... ....|++.|......+.+....|+++.|+-+++++..-..
T Consensus 47 LV~IcVigsQ~~qlq~dl~tLretfsNFssst~aEvqaL~S~G~sl~~kVtSLea~lEkqqQeLkAdhS~ 116 (138)
T PF03954_consen 47 LVVICVIGSQNSQLQRDLRTLRETFSNFSSSTLAEVQALSSQGGSLQDKVTSLEAKLEKQQQELKADHST 116 (138)
T ss_pred HHHHHhhcCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHhccccHHhHcccHHHHHHHHHHHHhhhHHH
Confidence 3444444 467888888887664 6778899999988889999999999999998887765433
No 402
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=60.63 E-value=50 Score=37.84 Aligned_cols=17 Identities=24% Similarity=0.153 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhhhc
Q 022288 27 KLRRDRLNEHFTELGNA 43 (299)
Q Consensus 27 RrRRdKLNErF~eLrsl 43 (299)
+..-+.+.+....|..+
T Consensus 236 ~~~le~l~~~~~~l~~i 252 (1353)
T TIGR02680 236 RDELERLEALERALRNF 252 (1353)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344455555555554
No 403
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=60.55 E-value=56 Score=28.43 Aligned_cols=69 Identities=12% Similarity=0.192 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHcCCCccCCCccccC
Q 022288 59 DTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLR---SEIENLNIQYQQRVRAMVPWAAMDHSVMMA 133 (299)
Q Consensus 59 DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~Lk---sE~e~L~~qlqqrl~~~~pw~~~dps~~~~ 133 (299)
+++--|+.|+..+.+|. ++.|++-...|..-.+|.|+|-.... .++...-.++++.+... ++++.-+++
T Consensus 6 k~l~n~R~lra~~re~~--~e~Lee~~ekl~~vv~er~~~~~~~~~~~~er~~~l~~i~~~~~~~----Git~eeL~~ 77 (134)
T PRK10328 6 QSLNNIRTLRAMAREFS--IDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKINTWLELMKAD----GINPEELLG 77 (134)
T ss_pred HHHhhHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCHHHHhh
Confidence 56677888888887763 44455555555555555555443333 33333334555666655 777777753
No 404
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=60.54 E-value=59 Score=32.04 Aligned_cols=56 Identities=20% Similarity=0.263 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----HHHHHHHHHHhhhHHHHHHHH
Q 022288 55 TILADTVQLLKDLTSQVEKLKTEHAALTEESRELT----QEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 55 SIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk----~EkNELRdEns~LksE~e~L~ 110 (299)
+-|.++-...++|+.++++|.-+.+.+.+..+.-. +....|+++++.+++.++.|+
T Consensus 52 sqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~ 111 (333)
T KOG1853|consen 52 SQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLR 111 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666777777777777766666555443222 234567888887777776554
No 405
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=60.36 E-value=67 Score=32.78 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhhcc-CCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 022288 31 DRLNEHFTELGNAL-DPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIE 107 (299)
Q Consensus 31 dKLNErF~eLrslL-vP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e 107 (299)
..||+-|..|..+- .|. ...-+..+|..|-.+...+..-...|+.....+..+++..-.+.|.|=.+...|-.+|.
T Consensus 119 ~~l~~ff~a~~~la~~P~-~~~~r~~vl~~a~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~ 195 (507)
T PRK07739 119 KVLDQFWNSLQELSKNPE-NLGARSVVRQRAQALAETFNYLSQSLTDIQNDLKSEIDVTVKEINSLASQISDLNKQIA 195 (507)
T ss_pred HHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667776666642 122 24457777777766666666555555555555556666666666666666666655554
No 406
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=60.34 E-value=48 Score=30.36 Aligned_cols=11 Identities=36% Similarity=0.274 Sum_probs=5.8
Q ss_pred HHHHHHHHHHH
Q 022288 25 REKLRRDRLNE 35 (299)
Q Consensus 25 rERrRRdKLNE 35 (299)
+|-+||...|.
T Consensus 52 ~E~k~R~E~~~ 62 (247)
T PF06705_consen 52 AEVKRRVESNK 62 (247)
T ss_pred HHHHHHHHHHH
Confidence 56666643333
No 407
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=60.33 E-value=78 Score=28.16 Aligned_cols=79 Identities=16% Similarity=0.224 Sum_probs=51.0
Q ss_pred HHHHHHHhhhccCCCCCCCChhhhH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 33 LNEHFTELGNALDPDRPKNDKATIL--ADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 33 LNErF~eLrslLvP~~~K~DKASIL--~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
+.+|.......|--+....=+..+. .+.-..+..|+.+++.+......|...+..|+....+++.+...|++.....+
T Consensus 67 ~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~ 146 (221)
T PF04012_consen 67 AEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAK 146 (221)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445544444444443322222222 34455667777888888888888888888888888888888888887777554
Q ss_pred H
Q 022288 111 I 111 (299)
Q Consensus 111 ~ 111 (299)
.
T Consensus 147 a 147 (221)
T PF04012_consen 147 A 147 (221)
T ss_pred H
Confidence 3
No 408
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=60.28 E-value=48 Score=28.90 Aligned_cols=73 Identities=26% Similarity=0.340 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHH----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 022288 25 REKLRRDRLNEHFTELGNALDPDRPKNDKATILADTVQ----LLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKL 100 (299)
Q Consensus 25 rERrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~----ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns 100 (299)
+|=+|=-.|.+.|..=... |+ .+.++|..-|. .|+.....+++|+.++..-..|+..|+.+..++...|.
T Consensus 52 sEL~~Ls~LK~~y~~~~~~--~~----~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~ 125 (131)
T PF04859_consen 52 SELRRLSELKRRYRKKQSD--PS----PQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANK 125 (131)
T ss_pred HHHHHHHHHHHHHHcCCCC--CC----ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555666677654432 22 33444555444 55555666777777777777777777777777766666
Q ss_pred hhH
Q 022288 101 SLR 103 (299)
Q Consensus 101 ~Lk 103 (299)
.|.
T Consensus 126 ~Le 128 (131)
T PF04859_consen 126 SLE 128 (131)
T ss_pred Hhh
Confidence 554
No 409
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=60.14 E-value=69 Score=33.50 Aligned_cols=88 Identities=22% Similarity=0.350 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHH-----------HHhhhHHHHH-------
Q 022288 25 REKLRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKT-----------EHAALTEESR------- 86 (299)
Q Consensus 25 rERrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~-----------en~~L~eE~~------- 86 (299)
.+|.|| |.+.+.+.... .-||++=|--.++++.|-+++..|+. +|..|+...+
T Consensus 357 l~~Hr~--i~egI~dVKka-------AakAg~kG~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVq 427 (488)
T PF06548_consen 357 LARHRR--IMEGIEDVKKA-------AAKAGVKGAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQ 427 (488)
T ss_pred HHHHHH--HHHHHHHHHHH-------HHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHH
Confidence 345554 56666666544 35666666557777777777666554 4444433221
Q ss_pred ----------------HHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHcC
Q 022288 87 ----------------ELTQE-KNDLREEKLSLRSEIENLNIQYQQRVRAMV 121 (299)
Q Consensus 87 ----------------eLk~E-kNELRdEns~LksE~e~L~~qlqqrl~~~~ 121 (299)
.+.++ -.....|+..++.+|++|.....+-+..|.
T Consensus 428 AagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~k 479 (488)
T PF06548_consen 428 AAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRKHKMEISTMK 479 (488)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 233577888999999999988877776664
No 410
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=60.13 E-value=49 Score=37.68 Aligned_cols=84 Identities=30% Similarity=0.427 Sum_probs=0.0
Q ss_pred hhccchHHHHHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 022288 18 RKMQKADREKLRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLRE 97 (299)
Q Consensus 18 Rk~~KAerERrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRd 97 (299)
++...+..+|.|| |||.-.+|.-+ |.. +...-.-++.=+.+.+.|.-+.+.|..++..++++...+..
T Consensus 776 ~~~~d~~~~re~r--lkdl~keik~~------k~~----~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~ 843 (1174)
T KOG0933|consen 776 KKMKDAKANRERR--LKDLEKEIKTA------KQR----AEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEK 843 (1174)
T ss_pred HHHhHhhhhhHhH--HHHHHHHHHHH------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhHHHHHHHHHHH
Q 022288 98 EKLSLRSEIENLNIQY 113 (299)
Q Consensus 98 Ens~LksE~e~L~~ql 113 (299)
....|+.++.+|+..+
T Consensus 844 ~~~~l~~e~~~l~~kv 859 (1174)
T KOG0933|consen 844 QISSLKSELGNLEAKV 859 (1174)
T ss_pred HHHHHHHHHHHHHHHH
No 411
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=60.13 E-value=1.1e+02 Score=26.16 Aligned_cols=78 Identities=18% Similarity=0.242 Sum_probs=46.2
Q ss_pred HHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHHHHH--------HHHHHHHHhhhHHH
Q 022288 35 EHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQV-EKLKTEHAALTEESRELTQE--------KNDLREEKLSLRSE 105 (299)
Q Consensus 35 ErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qV-q~Lk~en~~L~eE~~eLk~E--------kNELRdEns~LksE 105 (299)
--|.+|++| ...-+-|.....-+++++.+| +-|.+ -+.-....++.-.- ...+..|+.....-
T Consensus 6 ~~~~~l~DL-------~~rYs~L~s~lkKfkq~q~~I~q~L~e-RA~~d~kaRE~l~rLd~aFP~G~~~~~qE~~k~m~~ 77 (107)
T PRK15365 6 AAFSEYRDL-------EQSYMQLNHCLKKFHQIRAKVSQQLAE-RAESPKKSRETESILHNLFPQGVAGVNQEAEKDLKK 77 (107)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCcchhhHHhHHHHHHHHH
Confidence 356777775 234556777788888888888 44443 22222222221111 12235666666666
Q ss_pred HHHHHHHHHHHHHHc
Q 022288 106 IENLNIQYQQRVRAM 120 (299)
Q Consensus 106 ~e~L~~qlqqrl~~~ 120 (299)
|...=.||..||+.|
T Consensus 78 i~~~FKQLEt~LKnl 92 (107)
T PRK15365 78 IVSLFKQLEVRLKQL 92 (107)
T ss_pred HHHHHHHHHHHHHhc
Confidence 777777888999988
No 412
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=60.12 E-value=40 Score=28.15 Aligned_cols=42 Identities=21% Similarity=0.352 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLS 101 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~ 101 (299)
+.+||.++++ +++.|+.....|..++..++.+.++++.....
T Consensus 92 ~~eA~~~l~~---~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 92 LDEAIEILDK---RKEELEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666665543 44555555555555555555555554444333
No 413
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=60.02 E-value=36 Score=38.44 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 84 ESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 84 E~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
|....+.|.+||+.-+..|+.+++.++
T Consensus 404 elE~k~sE~~eL~r~kE~Lsr~~d~aE 430 (1243)
T KOG0971|consen 404 ELEKKNSELEELRRQKERLSRELDQAE 430 (1243)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443
No 414
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=59.90 E-value=66 Score=28.04 Aligned_cols=69 Identities=22% Similarity=0.290 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHcCCCccCCCccccC
Q 022288 59 DTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNI---QYQQRVRAMVPWAAMDHSVMMA 133 (299)
Q Consensus 59 DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~---qlqqrl~~~~pw~~~dps~~~~ 133 (299)
+++--|+.|+..+.+| .++.|++-...|..-.+|-|+|......++...+. +|.+.|... ++++.-+++
T Consensus 6 k~l~niR~lra~~re~--~~e~Lee~~ekl~~vv~er~ee~~~~~~~~~er~~kl~~~r~~m~~~----Gis~~eL~~ 77 (135)
T PRK10947 6 KILNNIRTLRAQAREC--TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIAD----GIDPNELLN 77 (135)
T ss_pred HHHHhHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCHHHHhc
Confidence 5667788888888877 34556666666666666666666655555554433 444555554 778877753
No 415
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=59.89 E-value=36 Score=29.67 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=15.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 73 KLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 73 ~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
.++..+..-...++.|+.-...++.+...|+.++..+
T Consensus 94 ~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~ 130 (146)
T PF08702_consen 94 ILETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQQ 130 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444433
No 416
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=59.86 E-value=80 Score=27.34 Aligned_cols=30 Identities=7% Similarity=0.345 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 59 DTVQLLKDLTSQVEKLKTEHAALTEESREL 88 (299)
Q Consensus 59 DAI~ylKdLr~qVq~Lk~en~~L~eE~~eL 88 (299)
+..+..+..+++|.+++...+.+..+++.+
T Consensus 79 e~~ei~~~i~~eV~~v~~dv~~i~~dv~~v 108 (126)
T PF07889_consen 79 EQKEISKQIKDEVTEVREDVSQIGDDVDSV 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333344444444444444443333333333
No 417
>PRK04406 hypothetical protein; Provisional
Probab=59.78 E-value=53 Score=25.82 Aligned_cols=46 Identities=9% Similarity=0.138 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIE 107 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e 107 (299)
..|.+|+.++.-++..++.|...+-...++...|+.+...|...+.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666655555555555555555555555555544443
No 418
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=59.70 E-value=50 Score=26.64 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEH 78 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en 78 (299)
++++|...+..|+..+
T Consensus 9 al~rL~~aid~LE~~v 24 (89)
T PF13747_consen 9 ALTRLEAAIDRLEKAV 24 (89)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555433
No 419
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=59.70 E-value=42 Score=33.35 Aligned_cols=52 Identities=19% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIEN 108 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~ 108 (299)
|..-+.-.+.++.++.++++....+.+-+.+++.+.+++-+|....|.+++.
T Consensus 268 le~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 268 LEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 420
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=59.45 E-value=92 Score=26.35 Aligned_cols=50 Identities=20% Similarity=0.253 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 67 LTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQR 116 (299)
Q Consensus 67 Lr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqr 116 (299)
=+.....|++.+..-+..++.+.+|.+-|.=.|.+|-..++.|+.++...
T Consensus 24 EQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 24 EQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555566666777777777777888888888888777744
No 421
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=59.24 E-value=30 Score=36.89 Aligned_cols=38 Identities=18% Similarity=0.313 Sum_probs=32.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 76 TEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 76 ~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
+....|+..+++|-+|...||.||..||.+++-|..|-
T Consensus 302 Ey~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En 339 (655)
T KOG4343|consen 302 EYMLGLEARLQALLSENEQLKKENATLKRQLDELVSEN 339 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcC
Confidence 44567899999999999999999999999999887654
No 422
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.17 E-value=50 Score=36.95 Aligned_cols=59 Identities=15% Similarity=0.284 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----------HHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 61 VQLLKDLTSQVEKLKTEHAALTEESRELTQEKND----------LREEKLSLRSEIENLNIQYQQRVRA 119 (299)
Q Consensus 61 I~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNE----------LRdEns~LksE~e~L~~qlqqrl~~ 119 (299)
|.-|.+|+.+++++++.+..|..|..+|....-. -..+...+...++-+.++|+.++-.
T Consensus 485 isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqlde 553 (1118)
T KOG1029|consen 485 ISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDE 553 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666665555544444322111 1222334444555555566665544
No 423
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=59.14 E-value=87 Score=33.86 Aligned_cols=35 Identities=23% Similarity=0.452 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 86 RELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 86 ~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
++.+.|...++++...|++-++.+..+++.+-..+
T Consensus 635 r~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i 669 (717)
T PF10168_consen 635 REFKKELERMKDQLQDLKASIEQLKKKLDYQQRQI 669 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666677777777777777777765544433
No 424
>PRK14153 heat shock protein GrpE; Provisional
Probab=58.98 E-value=34 Score=31.48 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 80 ALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 80 ~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
.+..++..|+.+..+|++...++.+|.+++.
T Consensus 37 ~~~~ei~~l~~e~~elkd~~lR~~AEfeN~r 67 (194)
T PRK14153 37 TADSETEKCREEIESLKEQLFRLAAEFDNFR 67 (194)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555555554443
No 425
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=58.94 E-value=77 Score=32.93 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCCccCCCccccCC
Q 022288 90 QEKNDLREEKLSLRSEIENLNIQYQQRVRAMVPWAAMDHSVMMAP 134 (299)
Q Consensus 90 ~EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw~~~dps~~~~p 134 (299)
.+.-.|+++...|..+..+|+++++..+... |-. +.|+|.++.
T Consensus 89 ~~~~~l~e~~~~~~~~~~~l~~el~~~~~~i-pN~-~hpsVpv~~ 131 (455)
T KOG2509|consen 89 AERKLLKEEAVELEEDESKLEDELYEVLLQI-PNI-THPSVPVSN 131 (455)
T ss_pred hhhhhhHHHHHhhHHHHHHHHHHHHHHHHhC-CCc-CCCCCCCCc
Confidence 4555678888888899999999999999987 443 677776654
No 426
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=58.86 E-value=43 Score=30.54 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHH
Q 022288 88 LTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 88 Lk~EkNELRdEns~LksE~e~L 109 (299)
.+..+.+++.+...|+.++...
T Consensus 151 a~~~~~e~~~~l~~l~~ei~~~ 172 (176)
T PF12999_consen 151 AKKKREELEKKLEELEKEIQAA 172 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433
No 427
>PRK04325 hypothetical protein; Provisional
Probab=58.84 E-value=59 Score=25.37 Aligned_cols=48 Identities=13% Similarity=0.082 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
..|.+|+.++.-++..++.|...+-.-..+...|+.+...|...+..+
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777777777777777777777666667777776666665555443
No 428
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=58.78 E-value=28 Score=28.51 Aligned_cols=12 Identities=17% Similarity=0.451 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 022288 65 KDLTSQVEKLKT 76 (299)
Q Consensus 65 KdLr~qVq~Lk~ 76 (299)
+.|+++|+-|++
T Consensus 27 ~~L~eEI~~Lr~ 38 (86)
T PF12711_consen 27 EALKEEIQLLRE 38 (86)
T ss_pred HHHHHHHHHHHH
Confidence 445555554443
No 429
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=58.78 E-value=37 Score=28.33 Aligned_cols=48 Identities=23% Similarity=0.343 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQ 112 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~q 112 (299)
+.+.+.+..|+...+.|...++.|..+..+++++...+...+.+|..+
T Consensus 90 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 90 KDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888899999888899998888888888888888888877777644
No 430
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=58.68 E-value=34 Score=35.35 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH
Q 022288 67 LTSQVEKLKTEHAALTEESRELTQE 91 (299)
Q Consensus 67 Lr~qVq~Lk~en~~L~eE~~eLk~E 91 (299)
|..+.+.|+.+...|..+.++|..+
T Consensus 181 ~~~e~~~l~~eE~~L~q~lk~le~~ 205 (447)
T KOG2751|consen 181 LLKELKNLKEEEERLLQQLEELEKE 205 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444433
No 431
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=58.66 E-value=1e+02 Score=25.20 Aligned_cols=84 Identities=17% Similarity=0.205 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-----------HHHHHHHHHHHHH
Q 022288 30 RDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEES-----------RELTQEKNDLREE 98 (299)
Q Consensus 30 RdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~-----------~eLk~EkNELRdE 98 (299)
-+.|..|+......|- .....+...-+-.-++.++.++..++..+..+..+.... ..+....++|...
T Consensus 9 ~~~l~~Wl~~~e~~l~-~~~~~~d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~ 87 (213)
T cd00176 9 ADELEAWLSEKEELLS-STDYGDDLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQR 87 (213)
T ss_pred HHHHHHHHHHHHHHhc-CcccCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 3456777777666542 222222445566667777777777765554444333333 3333444445544
Q ss_pred HhhhHHHHHHHHHHHH
Q 022288 99 KLSLRSEIENLNIQYQ 114 (299)
Q Consensus 99 ns~LksE~e~L~~qlq 114 (299)
...|..........|+
T Consensus 88 w~~l~~~~~~r~~~L~ 103 (213)
T cd00176 88 WEELRELAEERRQRLE 103 (213)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444443333333
No 432
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=58.65 E-value=26 Score=37.82 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHH
Q 022288 66 DLTSQVEKLKTEHAALTEESREL 88 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eL 88 (299)
+|-++|.+|..+++-|+.|....
T Consensus 326 DLIakVDeL~~E~~vLrgElea~ 348 (832)
T KOG2077|consen 326 DLIAKVDELTCEKDVLRGELEAV 348 (832)
T ss_pred HHHHHHHhhccHHHHHhhHHHHH
Confidence 44455555544444444444333
No 433
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=58.32 E-value=3.3 Score=39.39 Aligned_cols=39 Identities=21% Similarity=0.384 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSL 102 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~L 102 (299)
|.+++.+|..|+.-++.|.++.+.|+.|...|+.||.+|
T Consensus 124 IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 124 IEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444
No 434
>smart00340 HALZ homeobox associated leucin zipper.
Probab=58.30 E-value=24 Score=25.87 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 82 TEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 82 ~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
+.+.+.|+.-.+.|.+||.+|+.|+..|.
T Consensus 4 EvdCe~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 4 EVDCELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888888888888887764
No 435
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=58.27 E-value=61 Score=34.99 Aligned_cols=67 Identities=24% Similarity=0.393 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHHH------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHH---HHHHHHHHHH
Q 022288 54 ATILADTVQLLKD------------LTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIEN---LNIQYQQRVR 118 (299)
Q Consensus 54 ASIL~DAI~ylKd------------Lr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~---L~~qlqqrl~ 118 (299)
-.+|.+|++.+++ ++.++..|+.+.+.-..++.+++.++..|++....|...+++ -|..|.+|+.
T Consensus 538 l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 538 LELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888765542 233344455555555556666777777776555555554443 3456667776
Q ss_pred Hc
Q 022288 119 AM 120 (299)
Q Consensus 119 ~~ 120 (299)
.+
T Consensus 618 ~v 619 (717)
T PF10168_consen 618 RV 619 (717)
T ss_pred HH
Confidence 54
No 436
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=58.24 E-value=17 Score=29.40 Aligned_cols=70 Identities=16% Similarity=0.110 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCCccCCCccc
Q 022288 61 VQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMVPWAAMDHSVM 131 (299)
Q Consensus 61 I~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw~~~dps~~ 131 (299)
..-|.+||.++..+..++-.|-.+--.+..+..+++..+..---+-++- .++-.+++.+.--.++||.|+
T Consensus 2 ~~~L~~lR~~ID~ID~qLv~LL~~R~~~~~~ia~~K~~~~~~v~dp~Re-~~vl~~~~~~a~~~gl~p~~~ 71 (94)
T TIGR01795 2 VAELKALRQSIDNIDAAVIHMLAERFKCTSQVGVLKANAGLAPADPARE-DYQIARLRRLAIDAGLDPEFA 71 (94)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHH-HHHHHHHHHHHHHCCCCHHHH
Confidence 4567889999999998888887777777777777765543211111111 222233333333347888775
No 437
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=57.74 E-value=42 Score=33.12 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=20.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 022288 53 KATILADTVQLLKDLTSQVEKLKTEHA 79 (299)
Q Consensus 53 KASIL~DAI~ylKdLr~qVq~Lk~en~ 79 (299)
|-++=+.|..-|.+|..++++|+.+..
T Consensus 9 KeGL~~~aLqKIqelE~QldkLkKE~q 35 (307)
T PF10481_consen 9 KEGLPTRALQKIQELEQQLDKLKKERQ 35 (307)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345557788888888888888887663
No 438
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=57.61 E-value=40 Score=26.98 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLR 96 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELR 96 (299)
+.|..+++.|+.....|+.++..+..+.++|+
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~ 121 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQ 121 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555544444
No 439
>PRK09343 prefoldin subunit beta; Provisional
Probab=57.47 E-value=57 Score=27.35 Aligned_cols=45 Identities=22% Similarity=0.264 Sum_probs=23.0
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 50 KNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKND 94 (299)
Q Consensus 50 K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNE 94 (299)
+.||..+..+--.-+..+..++..|+.....|+..+.++.....+
T Consensus 66 ~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ 110 (121)
T PRK09343 66 KVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINE 110 (121)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555444444433
No 440
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=57.27 E-value=1.2e+02 Score=30.27 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=16.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Q 022288 93 NDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 93 NELRdEns~LksE~e~L~~qlqq 115 (299)
.++.+|...|..++++|+.+|+.
T Consensus 78 ~~~~~e~~~l~~~l~~~e~~l~~ 100 (359)
T PRK00591 78 EMAKEELKELEERLEELEEELKI 100 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888866654
No 441
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=57.26 E-value=64 Score=32.65 Aligned_cols=76 Identities=17% Similarity=0.213 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhhcc-CCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 022288 31 DRLNEHFTELGNAL-DPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIE 107 (299)
Q Consensus 31 dKLNErF~eLrslL-vP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e 107 (299)
..||+.|..|..+- .|. ...-+..+|..|-.+...+..-...|+..-..+..+++..-.+.|.|-++...|-.+|.
T Consensus 102 ~~l~~ff~a~~~la~~P~-~~~~R~~vl~~a~~L~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~ 178 (483)
T PRK07521 102 ARLSDFQAALQTAASSPD-NTTLAQAAVDAAQDLANSLNDASDAVQSARADADAEIADSVDTLNDLLAQFEDANNAVV 178 (483)
T ss_pred HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777776652 222 23446677877766666666666666655555556666666666666666555555554
No 442
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=57.24 E-value=1e+02 Score=31.78 Aligned_cols=55 Identities=18% Similarity=0.357 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 56 ILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 56 IL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
...+...-+.+|.+++..++.+...+.+.+..|+.+-.+.++....++..+..+.
T Consensus 377 ~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ik 431 (569)
T PRK04778 377 AYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIK 431 (569)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777777777777778777777777777777777777777766666666666554
No 443
>PLN02939 transferase, transferring glycosyl groups
Probab=57.18 E-value=36 Score=38.22 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 88 LTQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 88 Lk~EkNELRdEns~LksE~e~L~~qlq 114 (299)
|..|.+-||+||..||.+++-|..++-
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELI 250 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 567788899999999999988876654
No 444
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=57.14 E-value=1.4e+02 Score=30.91 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 86 RELTQEKNDLREEKLSLRSEIENLNIQYQQRVRA 119 (299)
Q Consensus 86 ~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~ 119 (299)
..|+.|++.|..|....+.|++.|+.|+.-+-++
T Consensus 352 aaLrkerd~L~keLeekkreleql~~q~~v~~sa 385 (442)
T PF06637_consen 352 AALRKERDSLAKELEEKKRELEQLKMQLAVKTSA 385 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 6677777777777777777777777666655544
No 445
>PRK14148 heat shock protein GrpE; Provisional
Probab=57.11 E-value=39 Score=31.03 Aligned_cols=33 Identities=21% Similarity=0.429 Sum_probs=15.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 78 HAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 78 n~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
++.|.+++..|+.+..+|++...++.+|.+++.
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~r 74 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENIR 74 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443
No 446
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=57.07 E-value=71 Score=32.11 Aligned_cols=75 Identities=13% Similarity=0.220 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhhcc-CCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 022288 31 DRLNEHFTELGNAL-DPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEI 106 (299)
Q Consensus 31 dKLNErF~eLrslL-vP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~ 106 (299)
..||+.|..|..+- .|. ...-+..+|..|-.+...+..-...|.+....+..++...-.+.|.|-++...|-.+|
T Consensus 107 ~~l~~ff~a~~~la~~P~-~~~~r~~vl~~a~~la~~~n~~~~~l~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I 182 (456)
T PRK07191 107 TGLNNFFSALSAATQLPD-SPPMRQQVIESANAMALRFNNVNNFIVQQKKSIGQQRDATVKQINSLTRSIADYNQKI 182 (456)
T ss_pred HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777766652 122 2345667777776666555555555554444455555555555555555555555554
No 447
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=56.98 E-value=1.3e+02 Score=29.31 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 022288 26 EKLRRDRLNEHFTELGNA 43 (299)
Q Consensus 26 ERrRRdKLNErF~eLrsl 43 (299)
=|.|=.+|.-+..+|.--
T Consensus 14 ~rL~v~~LhHQvlTLqcQ 31 (277)
T PF15030_consen 14 LRLRVQQLHHQVLTLQCQ 31 (277)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356666677777777643
No 448
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=56.97 E-value=66 Score=31.73 Aligned_cols=59 Identities=24% Similarity=0.375 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
+-|-.|..+|-.|+.....+..|..+|.+-..+.++-...|.+|+-.|+..|..-+..+
T Consensus 234 EEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL 292 (306)
T PF04849_consen 234 EEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAML 292 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 449
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=56.83 E-value=1.1e+02 Score=25.18 Aligned_cols=18 Identities=33% Similarity=0.529 Sum_probs=8.0
Q ss_pred HHHHhhhHHHHHHHHHHH
Q 022288 96 REEKLSLRSEIENLNIQY 113 (299)
Q Consensus 96 RdEns~LksE~e~L~~ql 113 (299)
..||.+|+.|+.+|+.-+
T Consensus 50 A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 50 AMENIRLREELRRLQSFY 67 (86)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 450
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=56.68 E-value=84 Score=33.51 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 56 ILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 56 IL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
-|+|+-.-++-++-++++|.+........-+.|+.|..||.|....+......-|.+|
T Consensus 241 ql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeEL 298 (596)
T KOG4360|consen 241 QLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEEL 298 (596)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554444444446677777777777777776666665444
No 451
>smart00150 SPEC Spectrin repeats.
Probab=56.66 E-value=74 Score=23.06 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=32.2
Q ss_pred HHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022288 33 LNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQ 90 (299)
Q Consensus 33 LNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~ 90 (299)
|..|+.....+|.-.... ....-+...++.++.|+.++...+..+..+....+.|..
T Consensus 10 l~~Wl~~~e~~l~~~~~~-~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~ 66 (101)
T smart00150 10 LEAWLSEKEALLASEDLG-KDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIE 66 (101)
T ss_pred HHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 445555554443221111 345556666777777777777777666666665555544
No 452
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=56.59 E-value=53 Score=26.91 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLS 101 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~ 101 (299)
-|.+|..+|+.|+.....+..+++.++.....-++|-.+
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~R 63 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANR 63 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666655555444444333
No 453
>PF13514 AAA_27: AAA domain
Probab=56.54 E-value=1.7e+02 Score=32.70 Aligned_cols=110 Identities=17% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhccCCC--CCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH------
Q 022288 27 KLRRDRLNEHFTELGNALDPD--RPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREE------ 98 (299)
Q Consensus 27 RrRRdKLNErF~eLrslLvP~--~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdE------ 98 (299)
+.....+......|..-|-|. .......-....+...|.+|..+...|......+..+..+.+.+...++.+
T Consensus 309 ~~e~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~ 388 (1111)
T PF13514_consen 309 EAELAELEAELRALLAQLGPDWDEEDLEALDPSLAARERIRELLQEREQLEQALAQARRELEEAERELEQLQAELAALPA 388 (1111)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccchhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc
Q ss_pred -----------------------HhhhHHHHHHHHHHHHHHHHHcCCCccCCCccccCCCC
Q 022288 99 -----------------------KLSLRSEIENLNIQYQQRVRAMVPWAAMDHSVMMAPPS 136 (299)
Q Consensus 99 -----------------------ns~LksE~e~L~~qlqqrl~~~~pw~~~dps~~~~pp~ 136 (299)
...+..++..++..+.+.++.+-||.+--..+.-.|.+
T Consensus 389 ~~~~~~l~~al~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~l~~L~~w~~~~~~l~~~~~P 449 (1111)
T PF13514_consen 389 PPDPEALRAALEAAQRLGDLEARLQEAEQALEAAERRLAAALAALGPWSGDLDALAALPLP 449 (1111)
T ss_pred cCCChHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHhccCCC
No 454
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=56.52 E-value=58 Score=34.90 Aligned_cols=75 Identities=21% Similarity=0.339 Sum_probs=42.5
Q ss_pred HHHHHHHHhhhcc-CCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 022288 32 RLNEHFTELGNAL-DPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIE 107 (299)
Q Consensus 32 KLNErF~eLrslL-vP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e 107 (299)
.||+-|..|..+- .|. .-.-+..+|..|-.++.++..--..|.+....+..+++..-.+.|.|-.+...|-.+|.
T Consensus 108 ~L~~Ff~alq~la~~P~-s~aaRq~vl~~A~~La~~fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~LN~qI~ 183 (676)
T PRK05683 108 ALQRFFTALQTAAANPT-DTAARQLLLTQAQGLSKRFNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNKQIA 183 (676)
T ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666542 121 23457777777766666666655555555555555555555555555555555555543
No 455
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=56.45 E-value=37 Score=34.39 Aligned_cols=31 Identities=39% Similarity=0.453 Sum_probs=15.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 022288 77 EHAALTEESRELTQEKNDLREEKLSLRSEIE 107 (299)
Q Consensus 77 en~~L~eE~~eLk~EkNELRdEns~LksE~e 107 (299)
++..|++|.+.|++|.++|+.|..+|++|..
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555555555555544443
No 456
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=56.41 E-value=44 Score=36.91 Aligned_cols=40 Identities=25% Similarity=0.454 Sum_probs=34.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 76 TEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 76 ~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
+..+.|.++.+.+++...+++.++.+|..++++|..++.|
T Consensus 216 e~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~q 255 (916)
T KOG0249|consen 216 EDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQ 255 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3445788999999999999999999999999999877765
No 457
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=56.29 E-value=1.2e+02 Score=27.95 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 86 RELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 86 ~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
.+=+.|...|+.=.+.++.|+..||.||..|+...
T Consensus 141 eeER~EaeQLQsLR~avRqElqELE~QL~DRl~~l 175 (179)
T PF14723_consen 141 EEEREEAEQLQSLRSAVRQELQELEFQLEDRLLQL 175 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666788888889998888888654
No 458
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=56.16 E-value=32 Score=36.31 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 88 LTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 88 Lk~EkNELRdEns~LksE~e~L~~ql 113 (299)
+-.+++.|+++|.-+...+..++.||
T Consensus 375 qf~tIe~Lk~~n~~~~~kl~~~e~~L 400 (557)
T PF01763_consen 375 QFDTIEDLKEENQDLEKKLRELESEL 400 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 459
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=56.14 E-value=95 Score=30.01 Aligned_cols=56 Identities=25% Similarity=0.262 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHH
Q 022288 61 VQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSL-------RSEIENLNIQYQQR 116 (299)
Q Consensus 61 I~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~L-------ksE~e~L~~qlqqr 116 (299)
..-|.+++..+..|..+...|...++.-+.|..-.+.....| ..|-++||.+|++.
T Consensus 175 ~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 175 QQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 334444444444555544555555544444433333222222 23555666555543
No 460
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=56.03 E-value=1e+02 Score=33.27 Aligned_cols=68 Identities=22% Similarity=0.249 Sum_probs=48.8
Q ss_pred CCCChhhhHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 49 PKNDKATILADTVQLLKDLTSQVEKLKTEHA----ALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQR 116 (299)
Q Consensus 49 ~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~----~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqr 116 (299)
.+.+|+.-+......+.+....+.+|-.++. .|.++......+++.|..++.....+|+.|+.+|+.|
T Consensus 272 ~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 272 KKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred hhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3556667777777777777777777776664 3455666677777788888888888888888877765
No 461
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=55.98 E-value=23 Score=28.04 Aligned_cols=30 Identities=30% Similarity=0.357 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 022288 79 AALTEESRELTQEKNDLREEKLSLRSEIEN 108 (299)
Q Consensus 79 ~~L~eE~~eLk~EkNELRdEns~LksE~e~ 108 (299)
..|.++++.|+.++..+++++..++.++.-
T Consensus 73 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~ 102 (104)
T PF13600_consen 73 KELEEELEALEDELAALQDEIQALEAQIAF 102 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444455555555555554443
No 462
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=55.91 E-value=51 Score=29.13 Aligned_cols=43 Identities=23% Similarity=0.395 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSL 102 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~L 102 (299)
+++||++| +.++++|+.....|++.+.+|.+....++.+.+.+
T Consensus 92 ~~eAie~l---~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~ 134 (145)
T COG1730 92 ADEAIEFL---KKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQL 134 (145)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666654 45777777777778888888877777766555443
No 463
>PRK10698 phage shock protein PspA; Provisional
Probab=55.68 E-value=98 Score=28.48 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 61 VQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 61 I~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
...+..|+.+++..+.....|...+..|+....+++..+..|......-+
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~ 147 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAAS 147 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555556666666666666666666666666665555444
No 464
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=55.66 E-value=1.1e+02 Score=31.73 Aligned_cols=50 Identities=30% Similarity=0.389 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHH-HHHH
Q 022288 70 QVEKLKTEHAALTEESRELTQEKN-DLREEKLSLRSEIENLNIQYQQ-RVRA 119 (299)
Q Consensus 70 qVq~Lk~en~~L~eE~~eLk~EkN-ELRdEns~LksE~e~L~~qlqq-rl~~ 119 (299)
++.-|+.+....++.+.|..-|+- +..+-...+++.|.+||.+.|| ++.+
T Consensus 325 Ei~nLKqElasmeervaYQsyERaRdIqEalEscqtrisKlEl~qq~qqv~Q 376 (455)
T KOG3850|consen 325 EIANLKQELASMEERVAYQSYERARDIQEALESCQTRISKLELQQQQQQVVQ 376 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555666666555543 2444456888999999887763 3444
No 465
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=55.58 E-value=24 Score=33.70 Aligned_cols=36 Identities=36% Similarity=0.461 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHH
Q 022288 69 SQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRS 104 (299)
Q Consensus 69 ~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~Lks 104 (299)
.+++.|++.+..+..+.+.++.|..+++++...++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (364)
T TIGR01242 6 VRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRS 41 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444444444444444444444445544444443
No 466
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=55.57 E-value=78 Score=33.38 Aligned_cols=75 Identities=15% Similarity=0.237 Sum_probs=43.1
Q ss_pred HHHHHHHHhhhcc-CCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 022288 32 RLNEHFTELGNAL-DPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIE 107 (299)
Q Consensus 32 KLNErF~eLrslL-vP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e 107 (299)
.|++-|..|..+- .|.. -.-+..+|..|-.+...+..-...|+.....+..+++..-.+.|.|-++...|-.+|.
T Consensus 120 ~l~~ff~al~~ls~~P~~-~a~R~~vl~~A~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~ 195 (627)
T PRK06665 120 RLDDFWDSWQDLSNYPEG-LAERQVVLERAQSLGERIHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQIV 195 (627)
T ss_pred HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666665542 2222 3457777777766666666655555555555555555555566666655555555554
No 467
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=55.29 E-value=1e+02 Score=26.17 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=11.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHH
Q 022288 98 EKLSLRSEIENLNIQYQQRVRA 119 (299)
Q Consensus 98 Ens~LksE~e~L~~qlqqrl~~ 119 (299)
+...++.++..+..+++.-+..
T Consensus 44 ~~~~~~~~~~~~~~~~~~~i~~ 65 (120)
T PF09969_consen 44 EVNGLEAELEELEARLRELIDE 65 (120)
T ss_pred hHHhHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554443
No 468
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.99 E-value=1.4e+02 Score=33.54 Aligned_cols=48 Identities=21% Similarity=0.206 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 022288 59 DTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEI 106 (299)
Q Consensus 59 DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~ 106 (299)
.|-+|+.+|...+++++..+..+..++..+++...+|.-|+..|++++
T Consensus 647 ~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~v 694 (970)
T KOG0946|consen 647 LAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEV 694 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666665555555555444444444444444444433
No 469
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=54.97 E-value=27 Score=28.12 Aligned_cols=14 Identities=43% Similarity=0.603 Sum_probs=5.2
Q ss_pred HHHHHHHhhhHHHH
Q 022288 93 NDLREEKLSLRSEI 106 (299)
Q Consensus 93 NELRdEns~LksE~ 106 (299)
+++..+|..|..++
T Consensus 90 ~~l~~eN~~L~~~i 103 (109)
T PF03980_consen 90 QELEEENEALAEEI 103 (109)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 470
>PF10549 ORF11CD3: ORF11CD3 domain; InterPro: IPR018877 This entry represents the carboxy-terminal domain from ORF11 (Q9XJS9 from SWISSPROT), one of the proteins of Pseudomonas phage D3 (Bacteriophage D3). The function of these proteins are unknown [].
Probab=54.74 E-value=61 Score=24.67 Aligned_cols=29 Identities=28% Similarity=0.262 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 89 TQEKNDLREEKLSLRSEIENLNIQYQQRV 117 (299)
Q Consensus 89 k~EkNELRdEns~LksE~e~L~~qlqqrl 117 (299)
-...|+.|..+..|.+.|+.|++|+|-.|
T Consensus 26 GrgL~~Wk~~Kp~l~~ki~~l~~~~Q~~L 54 (57)
T PF10549_consen 26 GRGLNRWKWKKPQLEQKIEELEEQLQITL 54 (57)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHhhhcc
Confidence 35678899999999999999998888654
No 471
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=54.71 E-value=24 Score=31.80 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEI 106 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~ 106 (299)
|..||+.---|+.+++ |-+.|+.+..-||||..-||.|+
T Consensus 9 lN~AIERnalLE~ELd-----------EKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 9 LNQAIERNALLESELD-----------EKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHH-----------HHHHHHHCH--------------
T ss_pred HHHHHHHhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666652 23334444444555555555555
No 472
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=54.61 E-value=1.5e+02 Score=29.40 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=6.3
Q ss_pred hhhHHHHHHHHHHH
Q 022288 100 LSLRSEIENLNIQY 113 (299)
Q Consensus 100 s~LksE~e~L~~ql 113 (299)
..|+.+.+..+..|
T Consensus 358 ~~L~Re~~~~~~~Y 371 (498)
T TIGR03007 358 TQLNRDYEVNKSNY 371 (498)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555554444333
No 473
>PRK11020 hypothetical protein; Provisional
Probab=54.54 E-value=1.1e+02 Score=26.56 Aligned_cols=57 Identities=25% Similarity=0.395 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHH
Q 022288 31 DRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTE-ESRELTQEKNDL 95 (299)
Q Consensus 31 dKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~e-E~~eLk~EkNEL 95 (299)
.+||+++..++.=|. +.+.....+.|.++..+++.|..+++.|.. ...+|..|...|
T Consensus 8 q~L~drLD~~~~Kla--------aa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l 65 (118)
T PRK11020 8 KRLSDRLDAIRHKLA--------AASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKL 65 (118)
T ss_pred HHHHHHHHHHHHHHH--------HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888887776531 222333334455555555555555554433 334444444443
No 474
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=54.47 E-value=1.1e+02 Score=24.38 Aligned_cols=79 Identities=28% Similarity=0.409 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHhhh
Q 022288 24 DREKLRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKT-EHAALTEESRELTQEKNDLREEKLSL 102 (299)
Q Consensus 24 erERrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~-en~~L~eE~~eLk~EkNELRdEns~L 102 (299)
+.++.|++ +...=..+|.++-.+....+ +.+=...=++|..-+.+... ....+.+++..|+....+|.++|..|
T Consensus 20 e~~~L~~~-~~~L~~~~R~~~GedL~~Ls----~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L 94 (100)
T PF01486_consen 20 EIAKLRKE-NESLQKELRHLMGEDLESLS----LKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQL 94 (100)
T ss_pred HHHHHHHH-HHHHHHHHhccccccccccc----hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555443 22333455555433333333 33444444444444444444 23456778888888888888888888
Q ss_pred HHHHH
Q 022288 103 RSEIE 107 (299)
Q Consensus 103 ksE~e 107 (299)
+.++.
T Consensus 95 ~~~~~ 99 (100)
T PF01486_consen 95 RQKIE 99 (100)
T ss_pred HHHhc
Confidence 77653
No 475
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=54.38 E-value=1e+02 Score=28.17 Aligned_cols=56 Identities=13% Similarity=0.267 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRA 119 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~ 119 (299)
|+.|..++...+...+.....+..|..+.+.|.++....+.....++.+|-+-|.-
T Consensus 178 i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~e 233 (237)
T PF00261_consen 178 IRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNE 233 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555555555555444433
No 476
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=54.18 E-value=1.2e+02 Score=30.99 Aligned_cols=87 Identities=16% Similarity=0.321 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHHHHHhhhHH
Q 022288 31 DRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEH------AALTEESRELTQEKNDLREEKLSLRS 104 (299)
Q Consensus 31 dKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en------~~L~eE~~eLk~EkNELRdEns~Lks 104 (299)
-+||--|..|+.+ . .....|....|..=-+-+.+|+.||+.|+.-. ..+.+++.++-.--.+|-..-.++..
T Consensus 122 SRl~tv~~~l~~l-a-~~~~~Dp~~Ri~~Le~e~~~i~~EI~~l~aG~~~~ld~~~~~er~~~i~~la~~L~~DFr~V~~ 199 (478)
T PF11855_consen 122 SRLNTVFDALRQL-A-EGTDPDPERRIAELEREIAEIDAEIDRLEAGDVPVLDDTQARERARQILQLARELPADFRRVED 199 (478)
T ss_pred HHHHHHHHHHHHH-H-HhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888886 2 23466776666666666666666666665321 24556666777777777777788888
Q ss_pred HHHHHHHHHHHHHHH
Q 022288 105 EIENLNIQYQQRVRA 119 (299)
Q Consensus 105 E~e~L~~qlqqrl~~ 119 (299)
++..|..++.+++..
T Consensus 200 ~~r~l~r~lr~~i~~ 214 (478)
T PF11855_consen 200 NFRELDRALRERIID 214 (478)
T ss_pred HHHHHHHHHHHHHhh
Confidence 888888888777654
No 477
>PLN02320 seryl-tRNA synthetase
Probab=54.17 E-value=68 Score=33.50 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---------HHHHHHHhhhHHHHHHHHHHHH
Q 022288 61 VQLLKDLTSQVEKLKTEHAALTEESRELTQEK---------NDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 61 I~ylKdLr~qVq~Lk~en~~L~eE~~eLk~Ek---------NELRdEns~LksE~e~L~~qlq 114 (299)
|+.|.+|-.+-.+|..+.+.|+.+.+.+..+. .+|..|-..|+.++..|+.+++
T Consensus 92 vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~ 154 (502)
T PLN02320 92 LELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLV 154 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666667776666655543 3556666777777777776653
No 478
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=54.17 E-value=26 Score=26.86 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=11.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHH
Q 022288 94 DLREEKLSLRSEIENLNIQYQQR 116 (299)
Q Consensus 94 ELRdEns~LksE~e~L~~qlqqr 116 (299)
||.+....|++||.+++.++..+
T Consensus 25 EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 25 ELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555444443
No 479
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=54.16 E-value=46 Score=35.05 Aligned_cols=50 Identities=36% Similarity=0.452 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHH---hhhHHHHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTE-ESRELTQEKNDLREEK---LSLRSEIENLNIQ 112 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~e-E~~eLk~EkNELRdEn---s~LksE~e~L~~q 112 (299)
-|.+||.||.+|...+++|.. .-++|++-..+|.+|+ ..|.-|+++|..-
T Consensus 570 s~delr~qi~el~~ive~lk~~~~kel~kl~~dleeek~mr~~lemei~~lkka 623 (627)
T KOG4348|consen 570 SLDELRAQIIELLCIVEALKKDHGKELEKLRKDLEEEKTMRSNLEMEIEKLKKA 623 (627)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence 467888999988888887754 3355555556666665 4667777777643
No 480
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=54.12 E-value=1.1e+02 Score=35.48 Aligned_cols=76 Identities=28% Similarity=0.412 Sum_probs=34.9
Q ss_pred HHHhh-hccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHhhhH-----
Q 022288 37 FTELG-NALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEH-------AALTEESRELTQEKNDLREEKLSLR----- 103 (299)
Q Consensus 37 F~eLr-slLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en-------~~L~eE~~eLk~EkNELRdEns~Lk----- 103 (299)
+.-|. ++.-|......|+..=.++ .|.++..+|..|+... ...-.....|.+|..-||.|+.++.
T Consensus 1079 LesLQRAV~TPVvtd~eKvr~rYe~--LI~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLRnEK~Rmh~~~dk 1156 (1439)
T PF12252_consen 1079 LESLQRAVVTPVVTDAEKVRVRYET--LITDITKRITDLEKAKLDNLDSIKKAIANLNNLQQELKLLRNEKIRMHSGTDK 1156 (1439)
T ss_pred HHHHHHhhcccccccHHHHHHHHHH--HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCc
Confidence 44444 3334555555554433332 3445555555554211 1112222334444444444444443
Q ss_pred ---HHHHHHHHHHH
Q 022288 104 ---SEIENLNIQYQ 114 (299)
Q Consensus 104 ---sE~e~L~~qlq 114 (299)
++||+||+|||
T Consensus 1157 VDFSDIEkLE~qLq 1170 (1439)
T PF12252_consen 1157 VDFSDIEKLEKQLQ 1170 (1439)
T ss_pred ccHHHHHHHHHHHH
Confidence 57788886655
No 481
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=53.86 E-value=1.2e+02 Score=30.43 Aligned_cols=80 Identities=20% Similarity=0.315 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhhcc-CCCC-CCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-----HHHHHHHHHhhhH
Q 022288 31 DRLNEHFTELGNAL-DPDR-PKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQ-----EKNDLREEKLSLR 103 (299)
Q Consensus 31 dKLNErF~eLrslL-vP~~-~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~-----EkNELRdEns~Lk 103 (299)
+.+.++|.+|...| .|+. ...+|+.-|..-+..++.+.....+++.....+.+-...++. -+.++.+|...|.
T Consensus 26 ~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~l~el~~~e~D~e~~~~a~~e~~~l~ 105 (364)
T TIGR00020 26 EKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSELLELAVEEDDEETFNELDAELKALE 105 (364)
T ss_pred HHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 45666677777543 2332 233444444333333333333333333332222211111111 1234556666777
Q ss_pred HHHHHHH
Q 022288 104 SEIENLN 110 (299)
Q Consensus 104 sE~e~L~ 110 (299)
.++++|+
T Consensus 106 ~~l~~le 112 (364)
T TIGR00020 106 KKLAELE 112 (364)
T ss_pred HHHHHHH
Confidence 7777776
No 482
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=53.80 E-value=80 Score=26.90 Aligned_cols=9 Identities=11% Similarity=0.397 Sum_probs=4.4
Q ss_pred hhHHHHHHH
Q 022288 55 TILADTVQL 63 (299)
Q Consensus 55 SIL~DAI~y 63 (299)
.+|++++=|
T Consensus 77 ell~E~fiF 85 (134)
T PF07047_consen 77 ELLGEAFIF 85 (134)
T ss_pred HHHHHHHHH
Confidence 455555433
No 483
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=53.69 E-value=33 Score=38.46 Aligned_cols=65 Identities=14% Similarity=0.189 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcC
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMV 121 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~ 121 (299)
|-+|-+-+.-+-...++|+.+.+.+.+.++.++..+...++|+++|.....+++.|+...-.-++
T Consensus 339 LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if 403 (1265)
T KOG0976|consen 339 LLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIF 403 (1265)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444445555666666666777777777777777777777777777777766655444443
No 484
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=53.69 E-value=67 Score=28.06 Aligned_cols=34 Identities=29% Similarity=0.318 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 55 TILADTVQLLKDLTSQVEKLKTEHAALTEESREL 88 (299)
Q Consensus 55 SIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eL 88 (299)
+||..==.+|-...+.+..|+.+|..|.+-+-.+
T Consensus 71 til~LheKvl~aKdETI~~lk~EN~fLKeAl~s~ 104 (126)
T PF13118_consen 71 TILNLHEKVLDAKDETIEALKNENRFLKEALYSM 104 (126)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445555556666665555544444
No 485
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=53.61 E-value=71 Score=25.75 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHH
Q 022288 69 SQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRS 104 (299)
Q Consensus 69 ~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~Lks 104 (299)
+.+.+|..+...-..+.-.+...++.|..|+..|..
T Consensus 31 ~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~ 66 (96)
T PF08647_consen 31 QKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNT 66 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333333333333333333333333334444333333
No 486
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=53.61 E-value=52 Score=29.96 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 79 AALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 79 ~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
..+......|..+...+.++...+...++.++.+|+.+..+|
T Consensus 189 G~i~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf~~m 230 (239)
T PF07195_consen 189 GSITSRIDSLNSQIKSLDKQIEDLEERLESKEERLRKQFSAM 230 (239)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666677777777777777777777666655
No 487
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=53.44 E-value=59 Score=31.88 Aligned_cols=45 Identities=27% Similarity=0.352 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCC
Q 022288 79 AALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMVPW 123 (299)
Q Consensus 79 ~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw 123 (299)
..|.++.++|..+|..|..|+...+..+..|..+|..-+++..|.
T Consensus 104 k~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~pl 148 (355)
T PF09766_consen 104 KRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPL 148 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 468888899999999999999999999999999999888876554
No 488
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=53.42 E-value=96 Score=31.78 Aligned_cols=75 Identities=12% Similarity=0.280 Sum_probs=42.8
Q ss_pred HHHHHHHHhhhcc-CCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 022288 32 RLNEHFTELGNAL-DPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIE 107 (299)
Q Consensus 32 KLNErF~eLrslL-vP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e 107 (299)
.||+-|..|..+- .|. ...-+..+|..|-.+...+..-...|+.....+.++++..-.+.|.|-++...|-.+|.
T Consensus 109 ~l~~ff~a~~~ls~~P~-~~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~ 184 (547)
T PRK08147 109 TMQDFFTSLQTLVSNAE-DPAARQALIGKAEGLVNQFKTTDQYLRDQDKGVNTAIGSSVDQINNYAKQIASLNDQIT 184 (547)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666542 222 23456777877766666666655555555555555555555555655555555555553
No 489
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=53.41 E-value=1.3e+02 Score=27.46 Aligned_cols=62 Identities=21% Similarity=0.268 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-----------HHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 55 TILADTVQLLKDLTSQVEKLK-----------TEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQR 116 (299)
Q Consensus 55 SIL~DAI~ylKdLr~qVq~Lk-----------~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqr 116 (299)
.++...=..|+.++.+|+.+. .++..|+.+-.++-...-++......|+.||..|+.+..++
T Consensus 143 ~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 143 AMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=53.36 E-value=66 Score=31.74 Aligned_cols=59 Identities=24% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
|.+|=.-|..|..++.+-.+++...+++|-.|..+.-+|+.....+-.|.+.|...|+.
T Consensus 208 L~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ 266 (306)
T PF04849_consen 208 LSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQA 266 (306)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 491
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=53.31 E-value=93 Score=30.90 Aligned_cols=63 Identities=21% Similarity=0.346 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhh------------HHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHH
Q 022288 53 KATILADTVQLLKDLTSQVEKLKTEHAAL------------TEESRELTQEKN-DLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 53 KASIL~DAI~ylKdLr~qVq~Lk~en~~L------------~eE~~eLk~EkN-ELRdEns~LksE~e~L~~qlqq 115 (299)
|...+.++..-+.+|+.++.+++.....+ +.++..+..+.. ++..+...++.++..++.++..
T Consensus 234 ~~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~ 309 (457)
T TIGR01000 234 KSTILATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKS 309 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=53.31 E-value=73 Score=29.72 Aligned_cols=53 Identities=23% Similarity=0.452 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQE--KNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~E--kNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
|-.|+++++.|+.+..-.+.|+++|..- ..|++++.+.|+.+..... .||...
T Consensus 88 i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~----erl~~~ 142 (201)
T KOG4603|consen 88 IVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYR----ERLKNI 142 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH----HHHHHH
No 493
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=53.14 E-value=1.4e+02 Score=32.46 Aligned_cols=90 Identities=21% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhccCCCCCCCChhhh-----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---------
Q 022288 30 RDRLNEHFTELGNALDPDRPKNDKATI-----LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDL--------- 95 (299)
Q Consensus 30 RdKLNErF~eLrslLvP~~~K~DKASI-----L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNEL--------- 95 (299)
+.+||+...+|......+. ..||.++ |..-.-||.+|+.+-.+=..+...+..++..|..+.++.
T Consensus 74 eael~~l~s~l~~~~~~~~-~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~ 152 (660)
T KOG4302|consen 74 EAELNDLCSALGEPSIIGE-ISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIA 152 (660)
T ss_pred HHHHHHHHHHhCCcccccc-cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCccccc
Q ss_pred ------HHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 96 ------REEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 96 ------RdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
-.+...|++++-.|++|+..|+..+
T Consensus 153 D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv 183 (660)
T KOG4302|consen 153 DESDLSLEKLEELREHLNELQKEKSDRLEKV 183 (660)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>KOG3366 consensus Mitochondrial F1F0-ATP synthase, subunit d/ATP7 [Energy production and conversion]
Probab=53.09 E-value=1.5e+02 Score=27.30 Aligned_cols=94 Identities=16% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhccCCCCC-CCChhhhHHHHHHHHHHHHHHHHHHH-------HHHhhhHHHHHHHHHHHHHHHHH
Q 022288 27 KLRRDRLNEHFTELGNALDPDRP-KNDKATILADTVQLLKDLTSQVEKLK-------TEHAALTEESRELTQEKNDLREE 98 (299)
Q Consensus 27 RrRRdKLNErF~eLrslLvP~~~-K~DKASIL~DAI~ylKdLr~qVq~Lk-------~en~~L~eE~~eLk~EkNELRdE 98 (299)
|+|=+.++.++.+|..= .|.+- -.=|..| .-...|..++.+.+.|+ .......++.+++..+..|..
T Consensus 33 k~~~~~~~~~l~~lpe~-~p~IDwa~Yrk~v--a~a~~VD~~ek~y~slk~v~~~~~ky~~~vda~~k~~~~~~ke~~-- 107 (172)
T KOG3366|consen 33 KSRNDEAVSRLLTLPEQ-PPTIDWAYYRKVV--ANAGLVDKYEKKYDSLKPVPVDEDKYLKEVDAEEKAAVKEIKEYE-- 107 (172)
T ss_pred HHhhHHHHHHHHhcccC-CCccCHHHHHHHh--hhhHHHHHHHHHHHhccccCCCHHHHHHHhhHHHHHHHHHHHHHH--
Q ss_pred HhhhHHHHHHHHHHHHHHHHHcCCCccCC
Q 022288 99 KLSLRSEIENLNIQYQQRVRAMVPWAAMD 127 (299)
Q Consensus 99 ns~LksE~e~L~~qlqqrl~~~~pw~~~d 127 (299)
...+.+|.+|+.+| ..++.+.|+.-|.
T Consensus 108 -~~s~~~iq~l~k~l-e~v~~~~P~demT 134 (172)
T KOG3366|consen 108 -SLSKKRIQELEKEL-EKVKSARPFDEMT 134 (172)
T ss_pred -HHHHHHHHHHHHHH-HHHHhcCCccccc
No 495
>PHA02557 22 prohead core protein; Provisional
Probab=53.05 E-value=1.6e+02 Score=28.87 Aligned_cols=79 Identities=23% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 31 DRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 31 dKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
..|.++|.+.. +-+|. +|..++..--+-|.+.+.++..|..+|..|.+.+.++.++.==.+--+.--.+|++++.
T Consensus 122 ~GLK~lF~Ehn-v~vpe----e~vdvV~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~~i~~e~t~gLtdsQkeKv~ 196 (271)
T PHA02557 122 GGLKELFVEHN-VVVPE----EKVDVVAEMEEELDEMEEELNELFEENVALEEYINEVKREVILSEVTKDLTESQKEKVA 196 (271)
T ss_pred HHHHHHHHHhC-cCCcH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHH
Q ss_pred HHHH
Q 022288 111 IQYQ 114 (299)
Q Consensus 111 ~qlq 114 (299)
.-..
T Consensus 197 ~L~E 200 (271)
T PHA02557 197 SLAE 200 (271)
T ss_pred HHHh
No 496
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=52.94 E-value=85 Score=30.61 Aligned_cols=60 Identities=20% Similarity=0.375 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHH---------------------HHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKT-EHAALTEESRELTQ---------------------EKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~-en~~L~eE~~eLk~---------------------EkNELRdEns~LksE~e~L~~qlq 114 (299)
|..+|-.+..|+.++.++.. .+..+....+.|+. |+.||+.+...|..++.-|++++.
T Consensus 166 Lqkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~~e~~ 245 (289)
T COG4985 166 LQKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDALRAELE 245 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q ss_pred HH
Q 022288 115 QR 116 (299)
Q Consensus 115 qr 116 (299)
..
T Consensus 246 r~ 247 (289)
T COG4985 246 RQ 247 (289)
T ss_pred hc
No 497
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=52.88 E-value=57 Score=26.11 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 74 LKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 74 Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
+++-...|...++.|..+..+|..+...+..++..|+.++++
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=52.83 E-value=1.2e+02 Score=26.47 Aligned_cols=58 Identities=17% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlq 114 (299)
+..-+.-+.+....+..|......+.+....|....++|-.|..+|..-.+.|...|+
T Consensus 16 ~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~ 73 (157)
T PF04136_consen 16 CDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQ 73 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
No 499
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=52.79 E-value=2.3e+02 Score=27.55 Aligned_cols=112 Identities=22% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhccCCCCC---------CCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--
Q 022288 27 KLRRDRLNEHFTELGNALDPDRP---------KNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDL-- 95 (299)
Q Consensus 27 RrRRdKLNErF~eLrslLvP~~~---------K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNEL-- 95 (299)
+.+-..+..++.+|+...-|+.+ ..=+..|-...-+++..+..+.+.++.....|...+..++.+..++
T Consensus 260 ~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~ 339 (444)
T TIGR03017 260 KTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVLELNR 339 (444)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -HHHHhhhHHHHHHHHHHHHHHHHHc-----------CCCccCCCccccCCCCCC
Q 022288 96 -REEKLSLRSEIENLNIQYQQRVRAM-----------VPWAAMDHSVMMAPPSYP 138 (299)
Q Consensus 96 -RdEns~LksE~e~L~~qlqqrl~~~-----------~pw~~~dps~~~~pp~y~ 138 (299)
..+-..|+.|.+-.+..|..-+... ..|.=+||..+-.-|.+|
T Consensus 340 ~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l~~~~~~~~~~Vi~~a~~P~~P~~P 394 (444)
T TIGR03017 340 QRDEMSVLQRDVENAQRAYDAAMQRYTQTRIEAQSNQTDISILNPAVPPLEPSSP 394 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEeeCCCCCCCCCCCC
No 500
>PF13514 AAA_27: AAA domain
Probab=52.77 E-value=2e+02 Score=32.06 Aligned_cols=96 Identities=21% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 022288 27 KLRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEI 106 (299)
Q Consensus 27 RrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~ 106 (299)
...+..+.+.-..|+..|.-... ..=|...+.....+..+.+........|.++...+..+.+++..+...+..++
T Consensus 628 ~~~~~~~~~~~~~L~~~l~~~~~----~~~l~~~l~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1111)
T PF13514_consen 628 EALRARRAAARAALAAALAALGP----AEELAALLEEAEALLEEWEQAAARREQLEEELQQLEQELEEAEAELQEAQEAL 703 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCc----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHcCCCccCCCcc
Q 022288 107 ENLNIQYQQRVRAMVPWAAMDHSV 130 (299)
Q Consensus 107 e~L~~qlqqrl~~~~pw~~~dps~ 130 (299)
...+.+++.-+... ++++.+
T Consensus 704 ~~~~~~w~~~l~~~----gL~~~~ 723 (1111)
T PF13514_consen 704 EEWQEEWQEALAEL----GLPADA 723 (1111)
T ss_pred HHHHHHHHHHHHhC----CCCCCC
Done!