Query 022288
Match_columns 299
No_of_seqs 160 out of 464
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 03:03:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022288.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022288hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 5.7E-17 2E-21 125.3 9.0 73 16-89 4-77 (82)
2 1nkp_A C-MYC, MYC proto-oncoge 99.6 4.8E-16 1.7E-20 121.9 9.1 79 16-95 4-85 (88)
3 1nkp_B MAX protein, MYC proto- 99.6 7E-16 2.4E-20 118.4 8.7 71 18-89 2-74 (83)
4 4ati_A MITF, microphthalmia-as 99.6 2.4E-15 8.1E-20 123.5 6.7 85 16-112 25-113 (118)
5 1nlw_A MAD protein, MAX dimeri 99.6 1.2E-14 4E-19 112.6 9.4 74 19-93 2-78 (80)
6 1hlo_A Protein (transcription 99.5 2.7E-14 9.1E-19 109.2 7.0 69 15-84 9-79 (80)
7 4h10_B Circadian locomoter out 99.5 2.6E-14 8.8E-19 109.4 6.0 60 16-75 6-65 (71)
8 1an4_A Protein (upstream stimu 99.4 8.7E-14 3E-18 102.3 2.4 54 17-71 4-63 (65)
9 1a0a_A BHLH, protein (phosphat 99.3 3.1E-13 1.1E-17 100.4 3.1 53 18-71 2-61 (63)
10 4h10_A ARYL hydrocarbon recept 99.3 3.9E-13 1.3E-17 102.9 2.9 55 15-70 6-64 (73)
11 3u5v_A Protein MAX, transcript 99.3 2.7E-12 9.2E-17 98.8 3.9 60 15-75 2-65 (76)
12 4f3l_A Mclock, circadian locom 99.0 4.1E-10 1.4E-14 103.2 5.8 55 16-70 10-64 (361)
13 1mdy_A Protein (MYOD BHLH doma 98.9 1.8E-09 6.2E-14 81.6 5.5 56 15-71 9-66 (68)
14 2ql2_B Neurod1, neurogenic dif 98.8 4.8E-09 1.6E-13 77.4 5.6 54 18-72 2-58 (60)
15 4ath_A MITF, microphthalmia-as 98.8 3E-08 1E-12 78.2 10.2 72 30-112 4-78 (83)
16 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 2.6E-09 8.9E-14 99.4 4.9 53 16-69 11-67 (387)
17 2lfh_A DNA-binding protein inh 98.4 9E-08 3.1E-12 73.1 1.4 46 23-69 19-67 (68)
18 4aya_A DNA-binding protein inh 97.7 6.2E-05 2.1E-09 60.8 5.7 57 17-74 24-83 (97)
19 2jee_A YIIU; FTSZ, septum, coi 97.5 0.0007 2.4E-08 53.2 10.0 61 57-117 15-75 (81)
20 1gd2_E Transcription factor PA 96.1 0.0087 3E-07 45.5 5.2 42 61-102 28-69 (70)
21 2jee_A YIIU; FTSZ, septum, coi 95.7 0.06 2.1E-06 42.3 8.6 59 62-120 6-74 (81)
22 3hnw_A Uncharacterized protein 95.2 0.15 5.2E-06 42.7 10.0 82 30-113 34-133 (138)
23 3hnw_A Uncharacterized protein 95.1 0.13 4.5E-06 43.1 9.3 46 62-107 89-134 (138)
24 3efg_A Protein SLYX homolog; x 94.3 0.1 3.5E-06 40.2 6.3 68 66-137 11-78 (78)
25 2wt7_A Proto-oncogene protein 94.0 0.11 3.9E-06 37.9 5.8 36 61-96 22-57 (63)
26 3ghg_A Fibrinogen alpha chain; 94.0 0.25 8.5E-06 50.0 10.0 85 32-119 82-191 (562)
27 2yy0_A C-MYC-binding protein; 93.9 0.083 2.8E-06 38.1 4.7 11 59-69 2-12 (53)
28 2dfs_A Myosin-5A; myosin-V, in 93.6 0.14 4.9E-06 54.6 8.1 20 92-111 1025-1044(1080)
29 1t2k_D Cyclic-AMP-dependent tr 93.5 0.17 5.7E-06 36.6 5.8 27 63-89 23-49 (61)
30 3a7p_A Autophagy protein 16; c 93.4 0.48 1.6E-05 41.0 9.5 81 30-112 37-118 (152)
31 3nmd_A CGMP dependent protein 92.8 0.24 8.1E-06 38.2 6.0 50 61-110 18-67 (72)
32 3s4r_A Vimentin; alpha-helix, 92.7 0.91 3.1E-05 35.6 9.5 54 61-114 22-87 (93)
33 3cve_A Homer protein homolog 1 92.5 0.6 2.1E-05 35.8 7.9 53 65-117 3-55 (72)
34 1jnm_A Proto-oncogene C-JUN; B 92.4 0.16 5.5E-06 36.9 4.5 31 62-92 22-52 (62)
35 3he5_B Synzip2; heterodimeric 92.4 0.38 1.3E-05 34.5 6.2 43 66-108 7-49 (52)
36 1ci6_A Transcription factor AT 92.2 0.57 1.9E-05 34.3 7.2 43 62-104 16-58 (63)
37 1t2k_D Cyclic-AMP-dependent tr 92.0 0.39 1.3E-05 34.6 6.1 33 78-110 24-56 (61)
38 3oja_B Anopheles plasmodium-re 91.3 0.52 1.8E-05 45.0 7.9 38 83-120 544-581 (597)
39 4h22_A Leucine-rich repeat fli 91.1 0.75 2.6E-05 37.6 7.4 63 51-117 23-85 (103)
40 1go4_E MAD1 (mitotic arrest de 90.9 0.84 2.9E-05 36.9 7.6 30 62-91 12-41 (100)
41 1dh3_A Transcription factor CR 90.9 0.2 6.8E-06 36.1 3.5 30 62-91 22-51 (55)
42 2oqq_A Transcription factor HY 90.8 0.54 1.9E-05 33.0 5.5 35 62-96 3-37 (42)
43 2dgc_A Protein (GCN4); basic d 90.8 0.84 2.9E-05 33.6 6.9 33 83-115 30-62 (63)
44 1jnm_A Proto-oncogene C-JUN; B 90.4 0.38 1.3E-05 34.9 4.6 30 80-109 26-55 (62)
45 1m1j_A Fibrinogen alpha subuni 90.1 5.6 0.00019 39.8 14.0 44 63-106 112-155 (491)
46 3htk_A Structural maintenance 90.0 2.5 8.6E-05 29.7 8.6 52 62-113 5-56 (60)
47 3cvf_A Homer-3, homer protein 90.0 1 3.5E-05 35.0 7.1 52 66-117 10-61 (79)
48 3o0z_A RHO-associated protein 89.9 4.7 0.00016 35.2 11.9 85 29-119 63-158 (168)
49 3qh9_A Liprin-beta-2; coiled-c 89.7 2 6.7E-05 33.8 8.5 55 59-113 23-77 (81)
50 3oja_B Anopheles plasmodium-re 89.7 3.5 0.00012 39.3 12.0 35 76-110 544-578 (597)
51 3i00_A HIP-I, huntingtin-inter 89.4 1.2 4.2E-05 36.7 7.5 26 56-81 34-59 (120)
52 3m91_A Proteasome-associated A 89.4 1.2 4.2E-05 32.0 6.6 37 73-109 13-49 (51)
53 1s94_A S-syntaxin; three helix 89.2 1.4 4.7E-05 37.0 7.9 27 94-120 78-104 (180)
54 2wt7_A Proto-oncogene protein 89.1 1.1 3.6E-05 32.7 6.2 31 80-110 27-57 (63)
55 2dgc_A Protein (GCN4); basic d 89.1 0.47 1.6E-05 34.9 4.4 32 61-92 29-60 (63)
56 3m9b_A Proteasome-associated A 89.0 0.52 1.8E-05 43.5 5.5 41 70-110 55-95 (251)
57 2v66_B Nuclear distribution pr 88.2 2.3 7.9E-05 34.9 8.3 22 64-85 5-26 (111)
58 1gd2_E Transcription factor PA 88.2 0.86 3E-05 34.5 5.4 38 77-114 30-67 (70)
59 1go4_E MAD1 (mitotic arrest de 88.2 0.6 2.1E-05 37.8 4.7 35 82-116 11-45 (100)
60 3q8t_A Beclin-1; autophagy, AT 88.0 3.3 0.00011 32.6 8.8 45 66-110 8-52 (96)
61 2v71_A Nuclear distribution pr 87.6 3.3 0.00011 36.7 9.5 19 63-81 57-75 (189)
62 1ik9_A DNA repair protein XRCC 87.5 3.7 0.00013 36.5 9.9 38 57-94 127-164 (213)
63 1c1g_A Tropomyosin; contractIl 87.3 5.3 0.00018 32.3 10.0 36 80-115 241-276 (284)
64 2xdj_A Uncharacterized protein 87.3 2.7 9.1E-05 32.7 7.8 30 81-110 25-54 (83)
65 1hjb_A Ccaat/enhancer binding 87.1 3.8 0.00013 32.1 8.6 30 85-114 38-67 (87)
66 2fxo_A Myosin heavy chain, car 87.0 4.9 0.00017 32.7 9.6 59 55-113 62-120 (129)
67 1c1g_A Tropomyosin; contractIl 86.9 4.7 0.00016 32.7 9.5 6 70-75 49-54 (284)
68 3m9b_A Proteasome-associated A 86.4 0.84 2.9E-05 42.2 5.2 38 78-115 56-93 (251)
69 4etp_A Kinesin-like protein KA 86.2 1.7 6E-05 41.5 7.5 51 65-115 6-56 (403)
70 1deb_A APC protein, adenomatou 86.1 3.4 0.00012 30.2 7.3 46 65-110 6-51 (54)
71 3na7_A HP0958; flagellar bioge 86.1 2.1 7E-05 38.1 7.5 35 69-103 32-66 (256)
72 2yy0_A C-MYC-binding protein; 86.1 0.92 3.1E-05 32.6 4.2 29 83-111 19-47 (53)
73 1jcd_A Major outer membrane li 85.6 3.5 0.00012 29.8 7.1 41 70-110 5-45 (52)
74 3ol1_A Vimentin; structural ge 85.5 4.6 0.00016 32.6 8.6 40 81-120 74-113 (119)
75 1lwu_C Fibrinogen gamma chain; 85.4 1.6 5.4E-05 41.3 6.7 53 59-111 2-54 (323)
76 1hjb_A Ccaat/enhancer binding 85.2 1.5 5E-05 34.5 5.4 32 65-96 39-70 (87)
77 3o0z_A RHO-associated protein 85.0 5.7 0.0002 34.7 9.5 17 74-90 95-111 (168)
78 3s9g_A Protein hexim1; cyclin 84.8 5.4 0.00018 32.6 8.6 54 50-107 29-89 (104)
79 3mq7_A Bone marrow stromal ant 84.7 2.4 8.3E-05 35.4 6.7 26 81-106 76-101 (121)
80 3tnu_B Keratin, type II cytosk 84.7 8.7 0.0003 31.0 10.0 59 57-115 38-107 (129)
81 3a7p_A Autophagy protein 16; c 84.5 5.3 0.00018 34.5 9.0 81 31-113 42-126 (152)
82 1gu4_A CAAT/enhancer binding p 84.4 6.7 0.00023 30.1 8.6 28 86-113 39-66 (78)
83 3tnu_A Keratin, type I cytoske 84.3 6.4 0.00022 32.0 9.1 59 57-115 40-109 (131)
84 3m91_A Proteasome-associated A 84.3 3.3 0.00011 29.8 6.4 41 62-102 9-49 (51)
85 1deq_A Fibrinogen (alpha chain 84.2 15 0.0005 36.0 12.9 46 62-107 113-158 (390)
86 1wle_A Seryl-tRNA synthetase; 84.1 5.2 0.00018 39.5 10.0 37 84-120 117-153 (501)
87 2wt7_B Transcription factor MA 84.0 6 0.00021 31.4 8.5 37 77-113 49-85 (90)
88 2eqb_B RAB guanine nucleotide 83.8 8.8 0.0003 30.9 9.4 54 59-112 9-62 (97)
89 2v71_A Nuclear distribution pr 83.7 4.1 0.00014 36.1 8.1 29 71-99 51-79 (189)
90 2dfs_A Myosin-5A; myosin-V, in 83.6 4.6 0.00016 43.3 10.0 56 63-118 971-1026(1080)
91 3htk_A Structural maintenance 83.5 5.6 0.00019 27.9 7.4 50 60-109 10-59 (60)
92 3nmd_A CGMP dependent protein 83.2 2.7 9.1E-05 32.3 5.9 40 57-96 28-67 (72)
93 1m1j_C Fibrinogen gamma chain; 82.7 4.7 0.00016 39.1 8.9 75 34-110 58-132 (409)
94 1gu4_A CAAT/enhancer binding p 82.4 2 6.7E-05 33.1 4.9 32 65-96 39-70 (78)
95 1ic2_A Tropomyosin alpha chain 82.3 13 0.00045 27.9 9.5 57 57-113 15-71 (81)
96 3s9g_A Protein hexim1; cyclin 82.2 10 0.00036 30.9 9.3 59 66-124 34-92 (104)
97 3he5_A Synzip1; heterodimeric 82.2 5 0.00017 28.4 6.5 42 63-111 4-45 (49)
98 3u06_A Protein claret segregat 81.9 4.4 0.00015 39.0 8.3 51 65-115 6-56 (412)
99 3qne_A Seryl-tRNA synthetase, 81.6 8.3 0.00029 38.2 10.3 36 85-120 73-108 (485)
100 2zqm_A Prefoldin beta subunit 81.4 5.3 0.00018 30.7 7.2 63 33-96 39-104 (117)
101 3i00_A HIP-I, huntingtin-inter 81.2 15 0.0005 30.2 10.1 67 49-115 9-79 (120)
102 2dq0_A Seryl-tRNA synthetase; 81.2 9.2 0.00031 37.1 10.3 36 85-120 71-106 (455)
103 2w83_C C-JUN-amino-terminal ki 81.0 2.6 9E-05 32.9 5.2 31 80-110 34-64 (77)
104 1nkp_B MAX protein, MYC proto- 80.7 1.9 6.4E-05 32.4 4.2 27 80-106 51-77 (83)
105 1zhc_A Hypothetical protein HP 80.6 1.3 4.5E-05 33.5 3.4 19 92-110 46-64 (76)
106 3oja_A Leucine-rich immune mol 80.5 6.2 0.00021 37.0 8.6 31 83-113 435-465 (487)
107 3v86_A De novo design helix; c 80.4 1.4 4.8E-05 28.0 2.8 26 63-88 1-26 (27)
108 3ibp_A Chromosome partition pr 79.9 12 0.00043 35.3 10.4 75 25-110 21-103 (302)
109 3trt_A Vimentin; cytoskeleton, 79.6 6.3 0.00021 29.0 6.7 22 87-108 53-74 (77)
110 1uii_A Geminin; human, DNA rep 79.5 5.6 0.00019 31.4 6.7 24 86-109 49-72 (83)
111 1dh3_A Transcription factor CR 79.4 4.2 0.00014 29.1 5.5 31 83-113 22-52 (55)
112 1jcd_A Major outer membrane li 79.3 6.6 0.00023 28.3 6.5 44 64-107 6-49 (52)
113 1ses_A Seryl-tRNA synthetase; 79.2 7.1 0.00024 37.4 8.7 57 64-120 37-101 (421)
114 1gk6_A Vimentin; intermediate 79.1 6.7 0.00023 28.3 6.6 47 64-110 2-48 (59)
115 3rrk_A V-type ATPase 116 kDa s 79.0 8.6 0.0003 34.8 8.9 42 78-127 101-143 (357)
116 2v4h_A NF-kappa-B essential mo 78.9 26 0.00088 28.9 11.4 11 44-54 14-24 (110)
117 3na7_A HP0958; flagellar bioge 78.9 14 0.00049 32.6 10.0 8 174-181 228-235 (256)
118 2xdj_A Uncharacterized protein 78.8 15 0.0005 28.5 8.8 33 64-96 22-54 (83)
119 3mq7_A Bone marrow stromal ant 78.8 16 0.00054 30.6 9.5 29 85-113 73-101 (121)
120 2fxo_A Myosin heavy chain, car 78.6 25 0.00085 28.4 10.8 58 53-110 67-124 (129)
121 2v4h_A NF-kappa-B essential mo 78.3 6.1 0.00021 32.6 6.8 78 25-112 18-105 (110)
122 2eqb_B RAB guanine nucleotide 78.2 11 0.00039 30.3 8.3 11 80-90 51-61 (97)
123 3u59_A Tropomyosin beta chain; 78.1 19 0.00066 28.0 9.5 51 57-107 18-68 (101)
124 3s4r_A Vimentin; alpha-helix, 78.1 4.8 0.00016 31.5 6.0 33 78-110 58-90 (93)
125 3u1c_A Tropomyosin alpha-1 cha 78.1 23 0.00078 27.8 11.0 43 57-99 18-60 (101)
126 2w6a_A ARF GTPase-activating p 78.1 9.1 0.00031 28.8 7.1 36 68-103 26-61 (63)
127 2oxj_A Hybrid alpha/beta pepti 77.9 2.5 8.6E-05 28.5 3.6 24 80-103 5-28 (34)
128 1nkp_A C-MYC, MYC proto-oncoge 77.8 4.1 0.00014 31.4 5.5 33 78-110 54-86 (88)
129 1fxk_A Prefoldin; archaeal pro 77.4 8.1 0.00028 29.3 7.0 63 33-96 34-99 (107)
130 3tnu_A Keratin, type I cytoske 76.3 8.9 0.00031 31.1 7.4 40 57-96 33-72 (131)
131 2j5u_A MREC protein; bacterial 76.2 1 3.5E-05 40.5 1.9 17 63-79 20-36 (255)
132 3swf_A CGMP-gated cation chann 76.2 8.5 0.00029 29.7 6.7 48 65-115 3-50 (74)
133 3oja_A Leucine-rich immune mol 76.2 12 0.00043 34.9 9.3 55 63-117 422-476 (487)
134 2zvf_A Alanyl-tRNA synthetase; 76.1 6.4 0.00022 32.2 6.5 17 60-76 5-21 (171)
135 1gk4_A Vimentin; intermediate 76.0 8.6 0.00029 29.2 6.7 44 64-107 28-71 (84)
136 3tnu_B Keratin, type II cytosk 75.8 4.2 0.00014 32.9 5.2 58 57-114 31-92 (129)
137 3swk_A Vimentin; cytoskeleton, 75.8 8.5 0.00029 29.7 6.7 34 80-113 46-79 (86)
138 3fx0_A NF-kappa-B essential mo 75.6 5.2 0.00018 32.3 5.6 90 20-109 6-95 (96)
139 1wlq_A Geminin; coiled-coil; 2 75.5 8.8 0.0003 30.3 6.8 28 77-104 39-66 (83)
140 3swy_A Cyclic nucleotide-gated 74.9 14 0.00047 26.1 7.0 43 66-111 2-44 (46)
141 3ni0_A Bone marrow stromal ant 74.8 25 0.00084 28.5 9.3 61 57-117 27-87 (99)
142 4etp_A Kinesin-like protein KA 74.8 9.2 0.00031 36.5 8.1 56 59-114 7-62 (403)
143 4emc_A Monopolin complex subun 74.7 9.7 0.00033 34.0 7.6 28 64-91 22-49 (190)
144 2wt7_B Transcription factor MA 74.7 5.3 0.00018 31.7 5.4 30 74-103 53-82 (90)
145 2w83_C C-JUN-amino-terminal ki 74.6 19 0.00066 28.0 8.4 46 65-110 12-57 (77)
146 3vmx_A Voltage-gated hydrogen 74.5 7.9 0.00027 27.8 5.7 39 69-114 4-42 (48)
147 1x8y_A Lamin A/C; structural p 74.4 18 0.00063 27.6 8.3 47 63-109 29-75 (86)
148 2zxx_A Geminin; coiled-coil, c 74.1 9.4 0.00032 29.7 6.6 34 76-109 34-67 (79)
149 1ik9_A DNA repair protein XRCC 74.0 11 0.00039 33.3 8.0 60 59-118 121-181 (213)
150 3lay_A Zinc resistance-associa 73.9 19 0.00065 31.2 9.2 30 91-120 114-143 (175)
151 1uix_A RHO-associated kinase; 73.6 17 0.00059 27.8 7.8 48 68-115 3-50 (71)
152 3m48_A General control protein 73.6 3.7 0.00013 27.5 3.5 15 96-110 13-27 (33)
153 1wt6_A Myotonin-protein kinase 73.3 24 0.00084 27.6 8.7 42 67-115 29-70 (81)
154 2ocy_A RAB guanine nucleotide 73.1 16 0.00056 31.4 8.5 20 58-77 9-28 (154)
155 2ve7_A Kinetochore protein HEC 72.6 7.2 0.00024 36.1 6.6 28 70-97 186-213 (315)
156 2xv5_A Lamin-A/C; structural p 72.5 14 0.00048 28.0 7.1 47 64-110 7-53 (74)
157 1a93_B MAX protein, coiled coi 72.1 4.5 0.00015 27.2 3.7 27 83-109 7-33 (34)
158 2dq3_A Seryl-tRNA synthetase; 71.7 11 0.00036 36.2 7.7 56 65-120 40-105 (425)
159 3q8t_A Beclin-1; autophagy, AT 71.6 31 0.0011 27.0 9.2 55 60-114 23-84 (96)
160 3u06_A Protein claret segregat 71.6 10 0.00035 36.5 7.6 49 63-111 11-59 (412)
161 1kd8_A GABH AIV, GCN4 acid bas 71.5 5.9 0.0002 27.0 4.2 21 83-103 8-28 (36)
162 3lay_A Zinc resistance-associa 70.9 24 0.00082 30.5 9.1 37 79-115 88-131 (175)
163 2cly_A ATP synthase B chain, m 70.3 26 0.00091 31.3 9.5 86 29-123 85-176 (214)
164 3m48_A General control protein 70.1 2.6 8.9E-05 28.2 2.2 23 81-103 5-27 (33)
165 2wvr_A Geminin; DNA replicatio 70.1 15 0.00051 33.2 7.8 48 62-109 97-148 (209)
166 3he5_A Synzip1; heterodimeric 70.1 15 0.0005 26.0 6.1 29 85-113 12-40 (49)
167 2oto_A M protein; helical coil 70.0 18 0.00063 29.8 8.0 28 65-92 53-80 (155)
168 1wle_A Seryl-tRNA synthetase; 69.9 18 0.00061 35.8 9.1 53 63-115 78-141 (501)
169 1kd8_B GABH BLL, GCN4 acid bas 69.8 5.2 0.00018 27.2 3.6 18 64-81 3-20 (36)
170 3vkg_A Dynein heavy chain, cyt 69.8 14 0.00047 44.3 9.5 60 38-98 2001-2064(3245)
171 1wlq_A Geminin; coiled-coil; 2 69.4 18 0.00063 28.4 7.3 32 57-88 33-64 (83)
172 1kd8_B GABH BLL, GCN4 acid bas 69.3 10 0.00035 25.8 5.0 26 79-104 4-29 (36)
173 3ol1_A Vimentin; structural ge 69.3 34 0.0012 27.5 9.1 33 63-95 21-53 (119)
174 4b4t_K 26S protease regulatory 69.0 6.1 0.00021 38.1 5.5 31 83-113 56-86 (428)
175 3d5a_X RF1, peptide chain rele 68.8 27 0.00093 33.5 9.8 88 30-117 5-96 (354)
176 3iv1_A Tumor susceptibility ge 68.8 35 0.0012 26.4 8.7 47 64-110 27-73 (78)
177 4b4t_K 26S protease regulatory 68.8 6.6 0.00022 37.8 5.6 46 65-110 45-90 (428)
178 2ve7_A Kinetochore protein HEC 68.6 4.6 0.00016 37.4 4.4 29 82-110 184-212 (315)
179 4dzn_A Coiled-coil peptide CC- 68.5 10 0.00035 25.0 4.8 25 86-110 5-29 (33)
180 1kd8_A GABH AIV, GCN4 acid bas 68.4 5.6 0.00019 27.1 3.6 28 64-91 3-30 (36)
181 3c3g_A Alpha/beta peptide with 68.2 7.2 0.00025 26.1 4.0 22 81-102 5-26 (33)
182 1nlw_A MAD protein, MAX dimeri 68.1 14 0.00047 28.1 6.2 18 86-103 57-74 (80)
183 1ez3_A Syntaxin-1A; three heli 68.1 39 0.0013 26.0 9.2 24 96-119 49-72 (127)
184 3lss_A Seryl-tRNA synthetase; 67.9 21 0.00073 35.2 9.2 32 89-120 109-141 (484)
185 3a2a_A Voltage-gated hydrogen 67.8 11 0.00038 27.9 5.4 43 66-115 8-50 (58)
186 1ic2_A Tropomyosin alpha chain 67.7 27 0.00093 26.1 7.8 40 76-115 27-66 (81)
187 3c3f_A Alpha/beta peptide with 67.6 6.2 0.00021 26.5 3.6 22 81-102 6-27 (34)
188 1lwu_C Fibrinogen gamma chain; 67.6 13 0.00046 35.0 7.4 52 68-119 4-55 (323)
189 3swk_A Vimentin; cytoskeleton, 67.2 33 0.0011 26.3 8.3 32 64-95 2-33 (86)
190 1t3j_A Mitofusin 1; coiled coi 66.8 24 0.00083 28.3 7.6 16 95-110 76-91 (96)
191 1zhc_A Hypothetical protein HP 66.8 11 0.00038 28.3 5.5 42 62-104 24-65 (76)
192 2wq1_A General control protein 66.6 8 0.00028 25.9 4.0 22 81-102 5-26 (33)
193 2v66_B Nuclear distribution pr 66.5 51 0.0017 26.9 9.7 40 57-96 30-69 (111)
194 2oxj_A Hybrid alpha/beta pepti 66.5 7.2 0.00025 26.2 3.8 26 64-89 3-28 (34)
195 1gk4_A Vimentin; intermediate 66.0 41 0.0014 25.4 8.6 34 84-117 27-60 (84)
196 1zbt_A RF-1, peptide chain rel 66.0 17 0.00057 35.2 7.8 83 29-114 18-111 (371)
197 1dn1_B Syntaxin 1A, syntaxin b 65.4 14 0.00048 33.0 6.8 27 94-120 70-96 (267)
198 3onj_A T-snare VTI1; helix, HA 65.0 40 0.0014 26.1 8.5 55 62-116 34-92 (97)
199 1ytz_T Troponin T; muscle, THI 64.8 15 0.00051 29.8 6.2 67 19-95 15-82 (107)
200 1hs7_A Syntaxin VAM3; UP-and-D 64.7 18 0.00062 28.8 6.5 29 92-120 66-94 (97)
201 2p2u_A HOST-nuclease inhibitor 64.6 43 0.0015 28.4 9.4 58 57-120 18-75 (171)
202 4emc_A Monopolin complex subun 64.4 10 0.00034 33.9 5.5 41 72-112 23-63 (190)
203 3w03_C DNA repair protein XRCC 64.1 13 0.00043 32.9 6.0 38 58-95 140-178 (184)
204 3plt_A Sphingolipid long chain 63.9 87 0.003 28.5 11.9 85 26-124 109-197 (234)
205 2ve7_C Kinetochore protein NUF 63.9 7.9 0.00027 34.9 4.8 18 55-72 124-141 (250)
206 3vp9_A General transcriptional 63.7 18 0.0006 28.9 6.2 45 62-110 40-88 (92)
207 2oto_A M protein; helical coil 63.5 28 0.00095 28.8 7.8 14 92-105 59-72 (155)
208 2zxx_A Geminin; coiled-coil, c 63.4 22 0.00076 27.6 6.6 38 57-94 29-66 (79)
209 1wt6_A Myotonin-protein kinase 63.1 36 0.0012 26.7 7.8 33 65-97 41-73 (81)
210 2dq0_A Seryl-tRNA synthetase; 63.1 31 0.0011 33.4 9.2 53 64-116 40-95 (455)
211 1j1d_B Troponin T, TNT; THIN f 63.0 52 0.0018 26.6 9.0 66 21-96 17-83 (106)
212 3q0x_A Centriole protein; cent 63.0 28 0.00096 31.5 8.2 65 51-115 160-224 (228)
213 2oqq_A Transcription factor HY 62.7 20 0.00068 25.1 5.6 29 62-90 10-38 (42)
214 2zqm_A Prefoldin beta subunit 62.7 25 0.00086 26.9 6.9 39 80-118 74-112 (117)
215 3w03_C DNA repair protein XRCC 62.2 15 0.0005 32.4 6.1 34 56-89 146-179 (184)
216 2bni_A General control protein 62.1 9 0.00031 25.8 3.6 22 81-102 6-27 (34)
217 3cve_A Homer protein homolog 1 62.0 41 0.0014 25.6 7.8 61 59-120 4-68 (72)
218 3qne_A Seryl-tRNA synthetase, 61.5 33 0.0011 33.9 9.2 54 63-116 41-97 (485)
219 3c3g_A Alpha/beta peptide with 61.0 14 0.00048 24.7 4.4 26 64-89 2-27 (33)
220 2wuj_A Septum site-determining 60.7 6.4 0.00022 28.2 3.0 17 94-110 38-54 (57)
221 3mov_A Lamin-B1; LMNB1, B-type 60.7 26 0.0009 27.5 6.7 42 66-107 41-82 (95)
222 3jsv_C NF-kappa-B essential mo 60.4 33 0.0011 27.5 7.3 15 95-109 66-80 (94)
223 2ocy_A RAB guanine nucleotide 60.0 33 0.0011 29.5 7.8 13 52-64 13-25 (154)
224 2lw1_A ABC transporter ATP-bin 59.9 35 0.0012 25.8 7.2 21 64-84 24-44 (89)
225 4h22_A Leucine-rich repeat fli 59.5 41 0.0014 27.4 7.8 48 67-114 28-75 (103)
226 2wq1_A General control protein 59.5 16 0.00053 24.5 4.4 26 64-89 2-27 (33)
227 3oa7_A Head morphogenesis prot 59.2 22 0.00076 32.0 6.7 39 72-110 33-71 (206)
228 1uii_A Geminin; human, DNA rep 59.0 31 0.001 27.2 6.7 34 76-109 46-79 (83)
229 1s1c_X RHO-associated, coiled- 58.8 40 0.0014 25.7 7.2 31 66-96 3-33 (71)
230 3mq9_A Bone marrow stromal ant 58.6 59 0.002 30.2 9.9 17 99-115 445-461 (471)
231 2no2_A HIP-I, huntingtin-inter 58.5 69 0.0024 25.6 11.5 40 71-110 56-95 (107)
232 2wvr_A Geminin; DNA replicatio 58.3 23 0.00079 32.0 6.7 32 57-88 110-141 (209)
233 3he4_B Synzip5; heterodimeric 58.0 28 0.00096 24.3 5.7 18 64-81 5-22 (46)
234 2dnx_A Syntaxin-12; snare, HAB 57.8 40 0.0014 27.2 7.6 12 32-43 25-36 (130)
235 1dip_A Delta-sleep-inducing pe 57.6 7.3 0.00025 30.4 2.9 11 93-103 32-42 (78)
236 2xv5_A Lamin-A/C; structural p 57.6 47 0.0016 25.1 7.4 47 67-113 3-49 (74)
237 2ve7_C Kinetochore protein NUF 57.5 8.9 0.0003 34.6 4.0 65 52-124 138-205 (250)
238 3iv1_A Tumor susceptibility ge 57.4 57 0.0019 25.3 8.0 15 67-81 16-30 (78)
239 3k29_A Putative uncharacterize 57.3 90 0.0031 27.3 10.1 41 35-79 55-95 (169)
240 1l8d_A DNA double-strand break 57.2 33 0.0011 26.3 6.7 26 89-114 77-102 (112)
241 1l8d_A DNA double-strand break 57.2 21 0.00072 27.4 5.6 25 86-110 13-37 (112)
242 2d4y_A HAP1, flagellar HOOK-as 57.1 33 0.0011 32.7 8.0 75 31-106 44-119 (463)
243 1zme_C Proline utilization tra 57.1 6.9 0.00024 27.4 2.6 24 62-85 44-67 (70)
244 3ra3_B P2F; coiled coil domain 57.0 7.8 0.00027 24.7 2.5 20 66-85 4-23 (28)
245 1w8x_M Protein P30, protein P, 56.2 21 0.00073 27.5 5.3 44 135-183 5-50 (83)
246 1x8y_A Lamin A/C; structural p 56.2 54 0.0019 24.9 7.7 26 89-114 34-59 (86)
247 1deb_A APC protein, adenomatou 56.1 25 0.00086 25.6 5.4 35 78-112 5-39 (54)
248 3efg_A Protein SLYX homolog; x 56.0 20 0.00069 27.3 5.2 47 72-118 10-56 (78)
249 3mud_A DNA repair protein XRCC 55.7 32 0.0011 30.2 7.0 15 71-85 137-151 (175)
250 3vmx_A Voltage-gated hydrogen 55.7 42 0.0014 24.0 6.4 22 67-88 16-37 (48)
251 1zxa_A CGMP-dependent protein 55.6 13 0.00045 28.1 4.0 35 76-110 18-52 (67)
252 1m1j_B Fibrinogen beta chain; 55.3 1.2E+02 0.0042 29.9 12.0 27 93-119 171-197 (464)
253 1uo4_A General control protein 55.2 14 0.00047 24.9 3.6 14 65-78 4-17 (34)
254 1uo4_A General control protein 54.9 14 0.00048 24.8 3.6 24 80-103 5-28 (34)
255 3qh9_A Liprin-beta-2; coiled-c 54.9 70 0.0024 25.1 8.1 45 72-116 22-66 (81)
256 3rrk_A V-type ATPase 116 kDa s 54.8 49 0.0017 29.8 8.5 52 60-111 224-276 (357)
257 2pnv_A Small conductance calci 54.7 23 0.00079 24.6 4.8 33 60-92 7-39 (43)
258 1np3_A Ketol-acid reductoisome 54.7 20 0.00068 32.5 5.8 14 112-125 315-328 (338)
259 1ses_A Seryl-tRNA synthetase; 54.6 49 0.0017 31.6 8.8 55 61-115 27-89 (421)
260 3a5t_A Transcription factor MA 54.5 0.57 1.9E-05 38.3 -3.9 57 58-114 30-96 (107)
261 3c3f_A Alpha/beta peptide with 54.3 15 0.00051 24.7 3.6 26 64-89 3-28 (34)
262 4dzn_A Coiled-coil peptide CC- 54.0 22 0.00077 23.4 4.4 23 67-89 7-29 (33)
263 4aj5_K Spindle and kinetochore 53.6 62 0.0021 27.1 8.1 52 67-118 48-99 (123)
264 1fxk_A Prefoldin; archaeal pro 53.5 22 0.00075 26.8 5.1 32 82-113 71-102 (107)
265 3cvf_A Homer-3, homer protein 53.4 41 0.0014 26.0 6.6 61 59-120 10-74 (79)
266 2zdi_C Prefoldin subunit alpha 53.4 23 0.0008 28.9 5.6 46 57-112 96-141 (151)
267 2hy6_A General control protein 53.3 16 0.00053 24.6 3.6 15 65-79 4-18 (34)
268 1joc_A EEA1, early endosomal a 53.2 65 0.0022 25.9 8.1 34 70-103 19-52 (125)
269 1gqe_A Release factor 2, RF2; 53.1 36 0.0012 32.8 7.5 23 25-47 22-45 (365)
270 1fzc_C Fibrin; blood coagulati 53.0 6.9 0.00024 36.9 2.6 42 69-110 4-45 (319)
271 3s84_A Apolipoprotein A-IV; fo 53.0 1.1E+02 0.0039 27.6 10.6 19 30-48 127-145 (273)
272 3viq_B Mating-type switching p 52.5 42 0.0014 26.4 6.6 26 66-91 5-30 (85)
273 3vkg_A Dynein heavy chain, cyt 52.3 44 0.0015 40.2 9.5 56 55-110 2014-2069(3245)
274 2hy6_A General control protein 52.2 17 0.00059 24.4 3.7 25 79-103 4-28 (34)
275 2e7s_A RAB guanine nucleotide 52.2 52 0.0018 27.8 7.5 16 98-113 68-83 (135)
276 2j5u_A MREC protein; bacterial 52.2 9.1 0.00031 34.3 3.1 32 58-93 12-43 (255)
277 1fxk_C Protein (prefoldin); ar 52.2 50 0.0017 26.1 7.2 28 57-87 86-113 (133)
278 3mq9_A Bone marrow stromal ant 52.0 57 0.0019 30.3 8.6 25 91-115 444-468 (471)
279 3l4q_C Phosphatidylinositol 3- 51.7 68 0.0023 27.9 8.5 54 67-120 101-157 (170)
280 1t3j_A Mitofusin 1; coiled coi 51.6 91 0.0031 24.9 8.9 39 81-119 52-93 (96)
281 2p22_A Suppressor protein STP2 51.5 38 0.0013 29.5 6.9 37 73-109 53-89 (174)
282 3bas_A Myosin heavy chain, str 51.0 80 0.0027 24.1 9.3 7 88-94 47-53 (89)
283 4dci_A Uncharacterized protein 50.5 1.2E+02 0.004 25.9 9.7 29 52-80 26-54 (150)
284 1t3u_A Conserved hypothetical 50.4 82 0.0028 24.1 8.0 37 30-69 32-68 (104)
285 2wuj_A Septum site-determining 50.0 17 0.00059 25.9 3.7 16 63-78 28-43 (57)
286 2c5k_T Syntaxin TLG1, T-snare 49.2 14 0.00047 29.0 3.4 56 58-116 39-94 (95)
287 1x79_B RAB GTPase binding effe 48.9 78 0.0027 25.9 7.9 28 62-89 6-33 (112)
288 1fxk_C Protein (prefoldin); ar 48.4 63 0.0022 25.5 7.3 45 65-109 84-128 (133)
289 2ke4_A CDC42-interacting prote 48.1 95 0.0032 24.5 8.1 14 29-42 16-29 (98)
290 2dq3_A Seryl-tRNA synthetase; 48.0 39 0.0013 32.3 7.0 56 60-115 28-93 (425)
291 2w6a_A ARF GTPase-activating p 48.0 73 0.0025 23.9 6.9 39 74-112 18-56 (63)
292 1dip_A Delta-sleep-inducing pe 47.5 19 0.00066 28.0 3.9 29 81-109 13-41 (78)
293 4e61_A Protein BIM1; EB1-like 47.5 1.1E+02 0.0039 24.8 8.6 26 66-91 15-40 (106)
294 2qyw_A Vesicle transport throu 47.3 38 0.0013 26.5 5.7 22 92-113 80-101 (102)
295 3swy_A Cyclic nucleotide-gated 47.1 64 0.0022 22.7 6.2 40 81-120 3-42 (46)
296 2zvf_A Alanyl-tRNA synthetase; 46.8 20 0.00067 29.2 4.1 23 62-84 32-54 (171)
297 3he5_B Synzip2; heterodimeric 46.7 76 0.0026 22.6 6.9 41 73-113 7-47 (52)
298 2wg5_A General control protein 46.4 16 0.00055 29.0 3.4 26 85-110 9-34 (109)
299 1j1d_C Troponin I, TNI; THIN f 46.3 1.3E+02 0.0045 25.2 11.3 55 26-85 34-88 (133)
300 3a7o_A Autophagy protein 16; c 45.5 1E+02 0.0034 23.9 7.5 47 63-109 19-65 (75)
301 3jsv_C NF-kappa-B essential mo 45.4 1.2E+02 0.004 24.3 8.2 16 100-115 64-79 (94)
302 1gmj_A ATPase inhibitor; coile 45.4 73 0.0025 25.0 6.9 27 83-109 51-77 (84)
303 2efr_A General control protein 44.8 1.2E+02 0.0041 25.9 8.8 17 62-78 98-114 (155)
304 3a2a_A Voltage-gated hydrogen 44.7 49 0.0017 24.5 5.5 22 67-88 23-44 (58)
305 2p22_A Suppressor protein STP2 44.5 51 0.0017 28.7 6.5 36 76-111 49-84 (174)
306 3a5t_A Transcription factor MA 44.4 1 3.5E-05 36.7 -3.9 41 70-110 59-99 (107)
307 2r2v_A GCN4 leucine zipper; co 44.2 32 0.0011 23.1 4.0 19 83-101 8-26 (34)
308 4ani_A Protein GRPE; chaperone 44.0 50 0.0017 29.5 6.6 30 66-95 63-92 (213)
309 1j1e_C Troponin I, TNI; THIN f 43.6 1.7E+02 0.0058 25.7 10.2 66 26-96 34-106 (180)
310 3l4q_C Phosphatidylinositol 3- 43.5 1.1E+02 0.0037 26.6 8.5 64 52-115 90-156 (170)
311 3bas_A Myosin heavy chain, str 43.4 1.1E+02 0.0037 23.4 9.2 31 80-110 46-76 (89)
312 2bni_A General control protein 43.1 24 0.00083 23.7 3.3 25 64-88 3-27 (34)
313 2r2v_A GCN4 leucine zipper; co 42.6 42 0.0014 22.6 4.4 25 64-88 3-27 (34)
314 3sja_C Golgi to ER traffic pro 42.6 67 0.0023 24.1 6.1 22 60-81 4-25 (65)
315 1fmh_A General control protein 42.4 44 0.0015 22.0 4.4 25 65-89 4-28 (33)
316 4b4t_J 26S protease regulatory 42.1 23 0.0008 34.1 4.4 40 70-109 26-65 (405)
317 3rmi_A Chorismate mutase prote 42.1 28 0.00097 27.7 4.3 41 59-99 9-49 (114)
318 2aze_B Transcription factor E2 41.9 51 0.0017 26.3 5.7 36 63-98 7-42 (106)
319 3swf_A CGMP-gated cation chann 41.9 60 0.0021 25.0 5.8 40 81-120 5-44 (74)
320 1j1d_B Troponin T, TNT; THIN f 41.9 91 0.0031 25.1 7.2 62 53-115 26-88 (106)
321 3lss_A Seryl-tRNA synthetase; 41.6 95 0.0032 30.7 8.7 53 63-115 45-129 (484)
322 3kin_B Kinesin heavy chain; mo 41.5 36 0.0012 27.3 4.8 19 95-113 94-112 (117)
323 3a7o_A Autophagy protein 16; c 41.4 64 0.0022 24.9 5.9 16 81-96 51-66 (75)
324 1grj_A GREA protein; transcrip 41.2 1.3E+02 0.0043 25.0 8.3 53 63-119 10-71 (158)
325 3hhm_B NISH2 P85alpha; PI3KCA, 41.2 73 0.0025 30.3 7.6 45 66-110 209-253 (373)
326 2lw1_A ABC transporter ATP-bin 40.8 1.1E+02 0.0039 22.9 8.1 27 67-93 20-46 (89)
327 2wg5_A General control protein 40.2 24 0.00082 28.0 3.6 20 94-113 11-30 (109)
328 3nr7_A DNA-binding protein H-N 39.7 85 0.0029 24.3 6.5 70 57-132 7-79 (86)
329 4aj5_1 SKA3, spindle and kinet 39.7 1.5E+02 0.0051 24.0 8.6 58 57-114 37-98 (101)
330 3ghg_C Fibrinogen gamma chain; 39.7 1.1E+02 0.0037 30.0 8.6 53 57-109 79-131 (411)
331 3opc_A Uncharacterized protein 39.7 1.4E+02 0.005 23.8 9.1 53 68-120 14-71 (154)
332 1hs7_A Syntaxin VAM3; UP-and-D 39.1 1.4E+02 0.0049 23.6 8.1 35 80-114 37-74 (97)
333 1use_A VAsp, vasodilator-stimu 38.9 45 0.0016 23.6 4.4 10 96-105 21-30 (45)
334 4e61_A Protein BIM1; EB1-like 38.8 56 0.0019 26.6 5.5 53 66-118 8-60 (106)
335 1m1j_B Fibrinogen beta chain; 38.8 1.6E+02 0.0055 29.1 9.8 18 59-76 118-135 (464)
336 2j69_A Bacterial dynamin-like 38.6 33 0.0011 34.6 5.0 37 76-112 359-395 (695)
337 2er8_A Regulatory protein Leu3 38.4 21 0.0007 25.2 2.6 23 61-83 48-70 (72)
338 2spc_A Spectrin; cytoskeleton; 38.2 87 0.003 23.0 6.2 32 64-95 38-69 (107)
339 3q4f_C DNA repair protein XRCC 38.2 36 0.0012 30.3 4.6 41 53-93 144-185 (186)
340 3he4_B Synzip5; heterodimeric 37.7 86 0.0029 21.9 5.5 14 72-85 6-19 (46)
341 3ghg_A Fibrinogen alpha chain; 37.5 1.3E+02 0.0044 30.8 9.0 53 73-125 114-167 (562)
342 4b4t_M 26S protease regulatory 37.0 26 0.00089 33.8 3.9 25 84-108 40-64 (434)
343 4fla_A Regulation of nuclear P 36.8 1.9E+02 0.0065 24.3 9.9 33 58-90 68-100 (152)
344 1vcs_A Vesicle transport throu 36.7 49 0.0017 25.8 4.8 73 32-115 20-92 (102)
345 3uul_A Utrophin; spectrin repe 36.4 1.2E+02 0.0042 22.1 8.8 33 56-88 37-69 (118)
346 3gpv_A Transcriptional regulat 36.1 65 0.0022 26.2 5.7 25 86-110 98-122 (148)
347 2d8d_A Aroag, phospho-2-dehydr 36.1 81 0.0028 23.5 5.8 37 64-100 5-41 (90)
348 2p4v_A Transcription elongatio 36.0 1.3E+02 0.0045 25.0 7.6 48 63-110 10-66 (158)
349 2a01_A Apolipoprotein A-I; fou 36.0 2.2E+02 0.0076 24.9 11.1 19 30-48 127-145 (243)
350 3oa7_A Head morphogenesis prot 35.8 1E+02 0.0036 27.7 7.3 60 40-106 15-74 (206)
351 2lf0_A Uncharacterized protein 35.6 60 0.002 27.2 5.3 50 25-75 7-56 (123)
352 1g6u_A Domain swapped dimer; d 35.6 92 0.0031 21.9 5.5 11 66-76 4-14 (48)
353 1lrz_A FEMA, factor essential 35.5 1.1E+02 0.0039 28.3 7.9 22 62-83 247-268 (426)
354 1fio_A SSO1 protein; four heli 35.3 1.8E+02 0.0063 23.7 9.0 27 94-120 46-72 (196)
355 2no2_A HIP-I, huntingtin-inter 34.9 1.7E+02 0.0059 23.3 7.9 18 58-75 25-42 (107)
356 4b4t_J 26S protease regulatory 34.7 54 0.0018 31.6 5.6 26 85-110 34-59 (405)
357 3uun_A Dystrophin; triple heli 34.2 1.3E+02 0.0045 21.8 10.3 35 54-88 35-69 (119)
358 2d4y_A HAP1, flagellar HOOK-as 34.0 1.7E+02 0.0057 27.8 8.9 51 57-109 98-148 (463)
359 2l5g_B Putative uncharacterize 33.9 95 0.0033 21.7 5.3 30 66-95 6-35 (42)
360 4fla_A Regulation of nuclear P 33.5 2.1E+02 0.0071 24.1 8.5 20 62-81 86-105 (152)
361 4b4t_M 26S protease regulatory 33.4 38 0.0013 32.6 4.4 34 70-103 33-66 (434)
362 2xnx_M M protein, M1-BC1; cell 33.4 1.1E+02 0.0036 26.3 6.6 38 72-109 83-120 (146)
363 1ytz_T Troponin T; muscle, THI 32.8 1E+02 0.0036 24.8 6.2 42 73-114 46-87 (107)
364 1lwu_B Fibrinogen beta chain; 32.4 65 0.0022 30.2 5.7 25 95-119 33-57 (323)
365 1use_A VAsp, vasodilator-stimu 32.4 1.1E+02 0.0037 21.7 5.4 21 86-106 18-39 (45)
366 2p22_C Protein SRN2; endosome, 32.4 2.5E+02 0.0085 24.4 9.1 21 86-106 89-109 (192)
367 2zdi_C Prefoldin subunit alpha 32.4 1.1E+02 0.0039 24.7 6.5 43 78-120 100-142 (151)
368 3c98_B Syntaxin-1A; protein co 32.2 44 0.0015 27.9 4.1 86 33-120 13-108 (279)
369 3q4f_C DNA repair protein XRCC 32.0 55 0.0019 29.1 4.8 27 57-83 156-182 (186)
370 3cl3_D NF-kappa-B essential mo 31.7 20 0.0007 30.3 1.9 54 67-120 53-106 (130)
371 1ytz_I Troponin I; muscle, THI 31.5 2.7E+02 0.0092 24.5 9.5 37 60-96 60-96 (182)
372 2odv_A Plectin 1, HD1; plakin 31.4 74 0.0025 28.2 5.6 53 66-118 169-225 (235)
373 2efl_A Formin-binding protein 31.4 2.5E+02 0.0084 24.0 8.8 7 176-182 288-294 (305)
374 1deq_A Fibrinogen (alpha chain 31.3 3.3E+02 0.011 26.6 10.5 61 52-112 85-156 (390)
375 3uun_A Dystrophin; triple heli 30.8 1.5E+02 0.0052 21.4 8.8 37 59-95 33-69 (119)
376 3aon_A V-type sodium ATPase su 30.5 2.4E+02 0.0083 24.5 8.7 62 64-125 19-80 (217)
377 1gmj_A ATPase inhibitor; coile 30.2 1.4E+02 0.0049 23.3 6.4 14 30-43 35-48 (84)
378 1gs9_A Apolipoprotein E, APOE4 30.0 2.5E+02 0.0085 23.6 11.4 48 31-79 69-116 (165)
379 2w6b_A RHO guanine nucleotide 30.0 1.5E+02 0.0051 21.8 6.0 20 63-82 11-30 (56)
380 2f42_A STIP1 homology and U-bo 29.8 57 0.0019 28.1 4.5 27 18-44 23-49 (179)
381 1s94_A S-syntaxin; three helix 29.7 1.9E+02 0.0063 23.8 7.5 10 33-42 7-16 (180)
382 3gp4_A Transcriptional regulat 29.7 2.1E+02 0.0072 23.1 7.7 24 74-97 86-109 (142)
383 1rq0_A RF-1, peptide chain rel 29.5 20 0.00067 34.3 1.7 22 96-117 59-80 (342)
384 3mud_A DNA repair protein XRCC 29.5 1.1E+02 0.0039 26.7 6.3 36 56-91 129-164 (175)
385 1fmh_A General control protein 29.5 72 0.0025 21.0 3.8 21 71-91 3-23 (33)
386 3gpv_A Transcriptional regulat 29.4 2.1E+02 0.0072 23.1 7.7 31 80-110 99-129 (148)
387 2p90_A Hypothetical protein CG 29.2 71 0.0024 29.5 5.3 41 78-118 231-271 (319)
388 4ad8_A DNA repair protein RECN 28.8 2E+02 0.0068 27.3 8.4 46 65-110 189-240 (517)
389 3q0x_A Centriole protein; cent 28.8 2.8E+02 0.0096 24.9 9.0 52 62-113 164-215 (228)
390 3trt_A Vimentin; cytoskeleton, 28.6 1.7E+02 0.0057 21.1 10.0 25 91-115 50-74 (77)
391 3mov_A Lamin-B1; LMNB1, B-type 28.4 2.1E+02 0.0072 22.3 9.6 39 72-110 40-78 (95)
392 2ihr_1 Peptide chain release f 28.3 25 0.00086 33.8 2.2 74 30-110 19-102 (365)
393 3azd_A Short alpha-tropomyosin 28.2 29 0.00099 23.1 1.8 27 63-89 5-31 (37)
394 2l5g_A GPS2 protein, G protein 27.9 82 0.0028 21.6 4.0 10 90-99 22-31 (38)
395 1vcs_A Vesicle transport throu 27.9 2.1E+02 0.0072 22.1 9.0 18 57-74 47-64 (102)
396 3vbb_A Seryl-tRNA synthetase, 27.7 1.8E+02 0.0062 29.0 8.2 26 95-120 110-135 (522)
397 3he4_A Synzip6; heterodimeric 27.6 1.3E+02 0.0043 21.7 5.2 20 69-88 24-43 (56)
398 3bbp_D GRIP and coiled-coil do 27.6 61 0.0021 24.9 3.8 14 97-110 50-63 (71)
399 3pxg_A Negative regulator of g 27.5 54 0.0019 30.9 4.3 19 94-112 424-442 (468)
400 2f23_A Anti-cleavage anti-GREA 27.1 2.3E+02 0.0078 23.2 7.6 23 91-113 47-69 (156)
401 3kin_B Kinesin heavy chain; mo 27.0 85 0.0029 25.1 4.8 27 69-95 89-115 (117)
402 1nfn_A Apolipoprotein E3; lipi 26.8 3E+02 0.01 23.5 11.2 53 31-84 69-121 (191)
403 1m1j_C Fibrinogen gamma chain; 26.8 2.3E+02 0.0078 27.5 8.5 45 73-117 88-132 (409)
404 2c5k_T Syntaxin TLG1, T-snare 26.8 1.2E+02 0.0041 23.6 5.5 26 62-87 36-61 (95)
405 1ez3_A Syntaxin-1A; three heli 26.7 2.1E+02 0.0073 21.8 9.6 64 56-119 55-124 (127)
406 2pms_C Pneumococcal surface pr 26.2 1E+02 0.0036 25.7 5.2 24 64-87 63-86 (125)
407 3s84_A Apolipoprotein A-IV; fo 26.1 1.6E+02 0.0056 26.6 7.0 20 101-120 202-221 (273)
408 1zxa_A CGMP-dependent protein 26.1 94 0.0032 23.4 4.5 39 59-97 15-53 (67)
409 1lwu_B Fibrinogen beta chain; 26.0 68 0.0023 30.1 4.6 30 82-111 27-56 (323)
410 3f6n_A Virion-associated prote 25.8 2.1E+02 0.0073 24.0 7.1 22 163-184 102-123 (129)
411 2vkl_A RV0948C/MT0975; helical 25.8 1.5E+02 0.0051 22.6 5.8 40 60-99 10-49 (90)
412 2z5i_A TM, general control pro 25.7 1.8E+02 0.006 20.5 6.4 19 60-78 10-28 (52)
413 3ra3_A P1C; coiled coil domain 25.7 38 0.0013 21.6 1.9 17 74-90 5-21 (28)
414 2p22_C Protein SRN2; endosome, 25.7 2.1E+02 0.0073 24.8 7.4 9 105-113 101-109 (192)
415 2e50_A Protein SET; histone ch 25.5 2.1E+02 0.0073 25.2 7.5 37 57-96 28-64 (225)
416 1ykh_B RNA polymerase II holoe 25.0 1.3E+02 0.0043 24.7 5.5 42 65-106 88-129 (132)
417 2yko_A LINE-1 ORF1P; RNA-bindi 25.0 1.2E+02 0.004 27.7 5.8 16 109-124 71-86 (233)
418 1joc_A EEA1, early endosomal a 24.8 2.7E+02 0.0091 22.2 8.6 28 67-94 9-36 (125)
419 3iox_A AGI/II, PA; alpha helix 24.6 4.5E+02 0.016 26.4 10.3 22 64-85 36-57 (497)
420 1yke_B RNA polymerase II holoe 24.5 1.2E+02 0.0042 25.4 5.5 42 65-106 88-129 (151)
421 3edv_A Spectrin beta chain, br 24.5 3.3E+02 0.011 23.3 9.7 60 57-116 254-317 (323)
422 2xzr_A Immunoglobulin-binding 24.4 2.9E+02 0.0099 22.6 7.9 26 85-110 78-103 (114)
423 4dnd_A Syntaxin-10, SYN10; str 24.1 2.9E+02 0.01 22.5 8.8 52 62-113 67-128 (130)
424 3kqg_A Langerin, C-type lectin 24.1 86 0.0029 24.9 4.3 13 101-113 27-39 (182)
425 1fzc_C Fibrin; blood coagulati 24.1 38 0.0013 31.8 2.5 35 79-113 7-41 (319)
426 3hhm_B NISH2 P85alpha; PI3KCA, 24.0 1.3E+02 0.0044 28.6 6.1 58 52-109 199-259 (373)
427 3kdq_A Uncharacterized conserv 24.0 1.6E+02 0.0054 24.9 6.1 12 32-43 15-26 (154)
428 1a93_A Coiled coil, LZ, MYC pr 24.0 87 0.003 20.9 3.5 29 81-109 5-33 (34)
429 1jad_A PLC-beta, phospholipase 23.9 4.2E+02 0.014 24.2 12.2 63 57-119 176-240 (251)
430 3edu_A Beta-I spectrin, spectr 23.8 1.6E+02 0.0055 24.2 6.1 87 23-115 76-165 (218)
431 3ilw_A DNA gyrase subunit A; D 23.6 1.5E+02 0.0052 29.4 6.7 10 57-66 371-380 (470)
432 3pik_A Cation efflux system pr 23.5 1.7E+02 0.0058 25.9 6.6 22 89-110 201-222 (446)
433 4dk0_A Putative MACA; alpha-ha 23.5 3.6E+02 0.012 23.7 8.7 28 87-114 119-146 (369)
434 4h62_K Mediator of RNA polymer 23.5 44 0.0015 22.8 2.0 21 30-50 16-36 (40)
435 4ani_A Protein GRPE; chaperone 23.1 2.2E+02 0.0074 25.3 7.1 34 57-90 61-94 (213)
436 1j1d_C Troponin I, TNI; THIN f 23.1 3.3E+02 0.011 22.7 9.7 41 74-114 63-103 (133)
437 1p9i_A Cortexillin I/GCN4 hybr 23.0 81 0.0028 20.4 3.1 18 71-88 8-25 (31)
438 3viq_B Mating-type switching p 22.9 1.7E+02 0.0057 22.9 5.6 44 63-107 9-65 (85)
439 1y1u_A Signal transducer and a 22.8 3E+02 0.01 28.0 8.8 7 35-41 19-25 (585)
440 1cii_A Colicin IA; bacteriocin 22.6 2.7E+02 0.0093 28.3 8.3 52 62-113 356-407 (602)
441 2j69_A Bacterial dynamin-like 22.6 2.2E+02 0.0075 28.6 7.8 25 73-97 363-387 (695)
442 3ret_A Salicylate biosynthesis 22.6 44 0.0015 25.7 2.2 36 63-98 9-44 (101)
443 1gax_A Valrs, valyl-tRNA synth 22.5 1.4E+02 0.0047 31.2 6.5 15 99-113 844-858 (862)
444 1zvu_A Topoisomerase IV subuni 22.3 1.5E+02 0.0051 31.0 6.6 13 31-43 341-353 (716)
445 3sjb_C Golgi to ER traffic pro 22.1 3E+02 0.01 21.9 7.8 23 59-81 20-42 (93)
446 3htk_C E3 SUMO-protein ligase 22.0 2.7E+02 0.0092 25.7 7.7 79 34-120 19-101 (267)
447 1ybz_A Chorismate mutase; cons 21.9 1.8E+02 0.006 22.3 5.5 37 63-99 18-54 (91)
448 1ecm_A Endo-oxabicyclic transi 21.9 1.7E+02 0.0059 22.4 5.5 35 64-98 7-41 (109)
449 3kqg_A Langerin, C-type lectin 21.6 1.1E+02 0.0039 24.2 4.6 10 67-76 4-13 (182)
450 2i1j_A Moesin; FERM, coiled-co 21.5 22 0.00077 35.3 0.4 7 33-39 340-346 (575)
451 2nrj_A HBL B protein; enteroto 21.5 2.3E+02 0.0079 26.3 7.2 29 62-90 123-151 (346)
452 3r2p_A Apolipoprotein A-I; amp 21.5 3.5E+02 0.012 22.5 9.4 14 31-44 85-98 (185)
453 3bvo_A CO-chaperone protein HS 21.4 2.9E+02 0.01 23.8 7.5 11 31-41 94-104 (207)
454 2gd5_A Charged multivesicular 21.2 3.4E+02 0.012 22.6 7.6 19 100-118 74-92 (179)
455 1zvu_A Topoisomerase IV subuni 21.1 1.5E+02 0.0052 30.9 6.4 43 71-113 404-446 (716)
456 2lw9_A Unconventionnal myosin- 21.1 97 0.0033 22.4 3.5 20 98-117 7-26 (51)
457 2inr_A DNA topoisomerase 4 sub 21.1 1.6E+02 0.0055 29.5 6.4 9 57-65 409-417 (514)
458 2z5i_A TM, general control pro 21.0 2.2E+02 0.0076 20.0 6.1 23 69-91 5-27 (52)
459 2efk_A CDC42-interacting prote 21.0 3.9E+02 0.013 22.8 8.8 8 176-183 281-288 (301)
460 2bbh_A Divalent cation transpo 20.9 1.5E+02 0.0051 25.3 5.5 51 58-110 182-232 (269)
461 3csx_A Putative uncharacterize 20.9 3E+02 0.01 21.4 6.6 29 63-91 16-44 (81)
462 2qih_A Protein USPA1; trimeric 20.8 3.3E+02 0.011 23.4 7.4 47 67-113 38-84 (157)
463 2lf0_A Uncharacterized protein 20.8 1.5E+02 0.0052 24.8 5.2 44 63-106 11-59 (123)
464 3uul_A Utrophin; spectrin repe 20.7 2.5E+02 0.0085 20.4 11.7 37 60-96 34-70 (118)
465 1j1e_C Troponin I, TNI; THIN f 20.7 4.3E+02 0.015 23.1 9.7 41 74-114 63-103 (180)
466 1x79_B RAB GTPase binding effe 20.6 3.5E+02 0.012 22.0 7.8 10 66-75 17-26 (112)
467 2aze_B Transcription factor E2 20.6 1.6E+02 0.0053 23.4 5.1 14 71-84 8-21 (106)
468 4dci_A Uncharacterized protein 20.5 3.9E+02 0.013 22.6 9.2 27 62-88 29-55 (150)
469 2xu6_A MDV1 coiled coil; prote 20.4 2.4E+02 0.0081 21.6 5.8 50 60-109 19-68 (72)
470 2p4v_A Transcription elongatio 20.3 2.2E+02 0.0075 23.6 6.2 48 71-119 11-64 (158)
471 4dk0_A Putative MACA; alpha-ha 20.3 3E+02 0.01 24.2 7.5 14 100-113 125-138 (369)
472 4i0x_B ESAT-6-like protein MAB 20.3 2.7E+02 0.0093 20.7 8.1 10 69-78 32-41 (103)
473 3fpp_A Macrolide-specific effl 20.3 4.3E+02 0.015 23.0 9.2 11 103-113 127-137 (341)
474 2gtv_X CM, chorismate mutase; 20.1 3.2E+02 0.011 21.4 7.5 36 64-99 5-48 (104)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.69 E-value=5.7e-17 Score=125.28 Aligned_cols=73 Identities=21% Similarity=0.318 Sum_probs=64.5
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHhhhccCCCC-CCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 16 ATRKMQKADREKLRRDRLNEHFTELGNALDPDR-PKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELT 89 (299)
Q Consensus 16 a~Rk~~KAerERrRRdKLNErF~eLrslLvP~~-~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk 89 (299)
..|+..|..+||+||++||++|.+|+++| |+. .|+|||+||.+||+||+.|+.+++.|+.++..|..+++...
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lv-P~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLV-VGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhc-cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45778888999999999999999999985 655 79999999999999999999999999998888887766543
No 2
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.64 E-value=4.8e-16 Score=121.93 Aligned_cols=79 Identities=22% Similarity=0.339 Sum_probs=63.2
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHhhhccCCCC---CCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 16 ATRKMQKADREKLRRDRLNEHFTELGNALDPDR---PKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEK 92 (299)
Q Consensus 16 a~Rk~~KAerERrRRdKLNErF~eLrslLvP~~---~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~Ek 92 (299)
+.++..|..+||+||++||++|.+|+.+ +|.. .|++|++||.+||+||+.|+.+.+.|..+.+.|..+...|+.+.
T Consensus 4 ~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~-vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl 82 (88)
T 1nkp_A 4 NVKRRTHNVLERQRRNELKRSFFALRDQ-IPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKL 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT-CGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888899999999999999999997 6764 59999999999999999999998888766655444444444444
Q ss_pred HHH
Q 022288 93 NDL 95 (299)
Q Consensus 93 NEL 95 (299)
.+|
T Consensus 83 ~~L 85 (88)
T 1nkp_A 83 EQL 85 (88)
T ss_dssp HHH
T ss_pred HHh
Confidence 333
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.63 E-value=7e-16 Score=118.36 Aligned_cols=71 Identities=18% Similarity=0.355 Sum_probs=57.5
Q ss_pred hhccchHHHHHHHHHHHHHHHHhhhccCCC--CCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 18 RKMQKADREKLRRDRLNEHFTELGNALDPD--RPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELT 89 (299)
Q Consensus 18 Rk~~KAerERrRRdKLNErF~eLrslLvP~--~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk 89 (299)
|+..|..+||+||+.||+.|.+|+++ +|. ..|++|++||.+||+||+.|+.+++.|+.+++.|..++..|.
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~l-vP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~ 74 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDS-VPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-SGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677899999999999999999998 565 369999999999999999999998888765544444433333
No 4
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.57 E-value=2.4e-15 Score=123.51 Aligned_cols=85 Identities=24% Similarity=0.350 Sum_probs=50.9
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHhhhccCCCC----CCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022288 16 ATRKMQKADREKLRRDRLNEHFTELGNALDPDR----PKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQE 91 (299)
Q Consensus 16 a~Rk~~KAerERrRRdKLNErF~eLrslLvP~~----~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~E 91 (299)
..++..|...||+||++||++|.+|+.+ +|.. .|++||+||.+||+||+.|+.+++.|+++.. +
T Consensus 25 ~~kr~~Hn~~ERrRR~~In~~~~~L~~l-vP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~-----------~ 92 (118)
T 4ati_A 25 RQKKDNHNLIERRRRFNINDRIKELGTL-IPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN-----------R 92 (118)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHH-SCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC------------
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHH-HhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H
Confidence 3577788899999999999999999998 5643 3889999999999999999999999987542 2
Q ss_pred HHHHHHHHhhhHHHHHHHHHH
Q 022288 92 KNDLREEKLSLRSEIENLNIQ 112 (299)
Q Consensus 92 kNELRdEns~LksE~e~L~~q 112 (299)
...|+.+|..|...+..||.|
T Consensus 93 ~~~l~~~n~~L~~riqeLE~~ 113 (118)
T 4ati_A 93 QKKLEHANRHLLLRVQELEMQ 113 (118)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 233566667777777666643
No 5
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.56 E-value=1.2e-14 Score=112.57 Aligned_cols=74 Identities=20% Similarity=0.260 Sum_probs=61.4
Q ss_pred hccchHHHHHHHHHHHHHHHHhhhccCCCC---CCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 19 KMQKADREKLRRDRLNEHFTELGNALDPDR---PKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKN 93 (299)
Q Consensus 19 k~~KAerERrRRdKLNErF~eLrslLvP~~---~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkN 93 (299)
+.+|+..||+||+.||++|.+|+++ +|.. .|++|++||.+||+||+.|+.+.++|..+++.|..+...|+.+.+
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~-vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGL-VPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-SCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456689999999999999999998 5743 599999999999999999999999888877766666666655543
No 6
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.50 E-value=2.7e-14 Score=109.23 Aligned_cols=69 Identities=19% Similarity=0.363 Sum_probs=60.3
Q ss_pred hhhhhccchHHHHHHHHHHHHHHHHhhhccCCCC--CCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 022288 15 AATRKMQKADREKLRRDRLNEHFTELGNALDPDR--PKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEE 84 (299)
Q Consensus 15 ~a~Rk~~KAerERrRRdKLNErF~eLrslLvP~~--~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE 84 (299)
...++..|..+||+||+.||+.|.+|+++ +|.. .|++|++||..||+||+.|+.++++|+.+++.|..+
T Consensus 9 ~~~~R~~hn~~Er~RR~~in~~f~~Lr~l-vP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 9 DADKRAHHNALERKRRDHIKDSFHSLRDS-VPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHH-CcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34677788899999999999999999998 5654 599999999999999999999999998888776654
No 7
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.49 E-value=2.6e-14 Score=109.42 Aligned_cols=60 Identities=28% Similarity=0.463 Sum_probs=51.8
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 022288 16 ATRKMQKADREKLRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLK 75 (299)
Q Consensus 16 a~Rk~~KAerERrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk 75 (299)
..++..|...||+||++||++|.+|+++|+....|+||++||.+||+||+.|+.++.=|+
T Consensus 6 ~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 6 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 456777889999999999999999999853344699999999999999999999887553
No 8
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.39 E-value=8.7e-14 Score=102.34 Aligned_cols=54 Identities=26% Similarity=0.509 Sum_probs=47.3
Q ss_pred hhhccchHHHHHHHHHHHHHHHHhhhccCCCCC------CCChhhhHHHHHHHHHHHHHHH
Q 022288 17 TRKMQKADREKLRRDRLNEHFTELGNALDPDRP------KNDKATILADTVQLLKDLTSQV 71 (299)
Q Consensus 17 ~Rk~~KAerERrRRdKLNErF~eLrslLvP~~~------K~DKASIL~DAI~ylKdLr~qV 71 (299)
.|+..|...||+||++||+.|.+|+.+| |... |+|||+||.+||+||+.|+.+.
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lv-P~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKII-PDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHS-CCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHC-cCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4677788999999999999999999985 5432 7899999999999999998764
No 9
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.34 E-value=3.1e-13 Score=100.43 Aligned_cols=53 Identities=23% Similarity=0.352 Sum_probs=46.1
Q ss_pred hhccchHHHHHHHHHHHHHHHHhhhccCCC-------CCCCChhhhHHHHHHHHHHHHHHH
Q 022288 18 RKMQKADREKLRRDRLNEHFTELGNALDPD-------RPKNDKATILADTVQLLKDLTSQV 71 (299)
Q Consensus 18 Rk~~KAerERrRRdKLNErF~eLrslLvP~-------~~K~DKASIL~DAI~ylKdLr~qV 71 (299)
|+..|..+||+||++||+.|.+|+++ +|. ..+.+||+||..||+||++|+.++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~L-lP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASL-IPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHT-SCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHH-CCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 45667799999999999999999997 462 357889999999999999998765
No 10
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.33 E-value=3.9e-13 Score=102.92 Aligned_cols=55 Identities=33% Similarity=0.399 Sum_probs=47.7
Q ss_pred hhhhhccchHHHHHHHHHHHHHHHHhhhccCCCC----CCCChhhhHHHHHHHHHHHHHH
Q 022288 15 AATRKMQKADREKLRRDRLNEHFTELGNALDPDR----PKNDKATILADTVQLLKDLTSQ 70 (299)
Q Consensus 15 ~a~Rk~~KAerERrRRdKLNErF~eLrslLvP~~----~K~DKASIL~DAI~ylKdLr~q 70 (299)
...|+..|...||+||++||+.|.+|+.| +|.. .|+|||+||..||+||+.|+.-
T Consensus 6 ~~~rR~~H~~~ERrRR~rIN~~l~eL~~L-vP~~~~~~~KldKasIL~~tV~ylk~l~~~ 64 (73)
T 4h10_A 6 IKNAREAHSQIEKRRRDKMNSFIDELASL-VPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 64 (73)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH-SHHHHTCSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHH-ccccccccccccHHHHHHHHHHHHHHHhcC
Confidence 34567778899999999999999999998 5643 6999999999999999998743
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.25 E-value=2.7e-12 Score=98.82 Aligned_cols=60 Identities=32% Similarity=0.414 Sum_probs=46.8
Q ss_pred hhhhhccchHHHHHHHHHHHHHHHHhhhccCCC---CCCC-ChhhhHHHHHHHHHHHHHHHHHHH
Q 022288 15 AATRKMQKADREKLRRDRLNEHFTELGNALDPD---RPKN-DKATILADTVQLLKDLTSQVEKLK 75 (299)
Q Consensus 15 ~a~Rk~~KAerERrRRdKLNErF~eLrslLvP~---~~K~-DKASIL~DAI~ylKdLr~qVq~Lk 75 (299)
.+.|+..++.+||+||+.||+.|.+|+.+ +|. ..|. .|++||..||+||+.|+.++++++
T Consensus 2 ~~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~-vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 2 GADKRAHHNALERKRRRDINEAFRELGRM-CQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred chhHHhhchHHHhhhHHHHHHHHHHHHHH-cCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888899999999999999999998 562 2355 799999999999999999998765
No 12
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.97 E-value=4.1e-10 Score=103.23 Aligned_cols=55 Identities=29% Similarity=0.506 Sum_probs=41.4
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHH
Q 022288 16 ATRKMQKADREKLRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQ 70 (299)
Q Consensus 16 a~Rk~~KAerERrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~q 70 (299)
..++..|+..||+||++||+.|.+|++||+....|+||++||..||.||+.|+..
T Consensus 10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 3556667789999999999999999998543557999999999999999998753
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.89 E-value=1.8e-09 Score=81.58 Aligned_cols=56 Identities=23% Similarity=0.389 Sum_probs=48.6
Q ss_pred hhhhhccchHHHHHHHHHHHHHHHHhhhccCCCC--CCCChhhhHHHHHHHHHHHHHHH
Q 022288 15 AATRKMQKADREKLRRDRLNEHFTELGNALDPDR--PKNDKATILADTVQLLKDLTSQV 71 (299)
Q Consensus 15 ~a~Rk~~KAerERrRRdKLNErF~eLrslLvP~~--~K~DKASIL~DAI~ylKdLr~qV 71 (299)
...++..++.+||+|+..||+.|..||.+| |.. .|++|+.||-.||+||..|++.+
T Consensus 9 ~~~rR~~aN~rER~R~~~iN~af~~LR~~i-P~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 9 NADRRKAATMRERRRLSKVNEAFETLKRST-SSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred chhhhhHhhHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 445677788999999999999999999984 643 49999999999999999998754
No 14
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.82 E-value=4.8e-09 Score=77.40 Aligned_cols=54 Identities=24% Similarity=0.292 Sum_probs=46.5
Q ss_pred hhccchHHHHHHHHHHHHHHHHhhhccCCCC---CCCChhhhHHHHHHHHHHHHHHHH
Q 022288 18 RKMQKADREKLRRDRLNEHFTELGNALDPDR---PKNDKATILADTVQLLKDLTSQVE 72 (299)
Q Consensus 18 Rk~~KAerERrRRdKLNErF~eLrslLvP~~---~K~DKASIL~DAI~ylKdLr~qVq 72 (299)
|+...+.+||+|+..||+.|..||.+| |.. .|..|+.||-.||+||..|++.++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~l-P~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVV-PCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS-SSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHc-cCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 455567899999999999999999984 543 499999999999999999997653
No 15
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.81 E-value=3e-08 Score=78.25 Aligned_cols=72 Identities=22% Similarity=0.374 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhhhccCCCC---CCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 022288 30 RDRLNEHFTELGNALDPDR---PKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEI 106 (299)
Q Consensus 30 RdKLNErF~eLrslLvP~~---~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~ 106 (299)
|..||++|.+|+.++++.. .|..|++||..|++||+.|+.++++++++... ...|...|..|.--+
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r-----------~k~le~~n~~l~~ri 72 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR-----------QKKLEHANRHLLLRV 72 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhhhhhHHHHHHH
Confidence 8899999999999854322 48999999999999999999999888765432 222445555555555
Q ss_pred HHHHHH
Q 022288 107 ENLNIQ 112 (299)
Q Consensus 107 e~L~~q 112 (299)
-.||.|
T Consensus 73 qELE~q 78 (83)
T 4ath_A 73 QELEMQ 78 (83)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555533
No 16
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.81 E-value=2.6e-09 Score=99.39 Aligned_cols=53 Identities=34% Similarity=0.414 Sum_probs=47.1
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHhhhccCC----CCCCCChhhhHHHHHHHHHHHHH
Q 022288 16 ATRKMQKADREKLRRDRLNEHFTELGNALDP----DRPKNDKATILADTVQLLKDLTS 69 (299)
Q Consensus 16 a~Rk~~KAerERrRRdKLNErF~eLrslLvP----~~~K~DKASIL~DAI~ylKdLr~ 69 (299)
..++..|...||+||++||+.|.+|+.+ +| ...|+||++||..||.|||.|+.
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l-~p~~~~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASL-VPTCNAMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence 4566777799999999999999999998 56 56799999999999999999874
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.36 E-value=9e-08 Score=73.13 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCCCC---CCCChhhhHHHHHHHHHHHHH
Q 022288 23 ADREKLRRDRLNEHFTELGNALDPDR---PKNDKATILADTVQLLKDLTS 69 (299)
Q Consensus 23 AerERrRRdKLNErF~eLrslLvP~~---~K~DKASIL~DAI~ylKdLr~ 69 (299)
+++||+|+..||+-|..||.+ +|.. .|..|..||--||+||..|+.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~-VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLREL-VPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHH-CCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 489999999999999999998 5644 499999999999999999974
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.65 E-value=6.2e-05 Score=60.81 Aligned_cols=57 Identities=19% Similarity=0.290 Sum_probs=42.5
Q ss_pred hhhccchHHHHHHHHHHHHHHHHhhhccCCCC---CCCChhhhHHHHHHHHHHHHHHHHHH
Q 022288 17 TRKMQKADREKLRRDRLNEHFTELGNALDPDR---PKNDKATILADTVQLLKDLTSQVEKL 74 (299)
Q Consensus 17 ~Rk~~KAerERrRRdKLNErF~eLrslLvP~~---~K~DKASIL~DAI~ylKdLr~qVq~L 74 (299)
.|.++..++||.|=..||+-|..||.+| |.. .|..|..||--||.||..|+.-++.-
T Consensus 24 ~R~k~~~~~~r~Rm~~lN~AF~~LR~~v-P~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~ 83 (97)
T 4aya_A 24 SRSKTPVDDPMSLLYNMNDCYSKLKELV-PSIPQNKKVSKMEILQHVIDYILDLQIALDSH 83 (97)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHC-TTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHC-CCCCCCCcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 4555554566778888999999999984 543 49999999999999999999877643
No 19
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=97.54 E-value=0.0007 Score=53.21 Aligned_cols=61 Identities=16% Similarity=0.342 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRV 117 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl 117 (299)
+..||+-|.-|+-+|++|+.+|.+|.++..+++.....|+.||.+|+.|...-+..++.-|
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999988874444443
No 20
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=96.07 E-value=0.0087 Score=45.54 Aligned_cols=42 Identities=38% Similarity=0.376 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Q 022288 61 VQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSL 102 (299)
Q Consensus 61 I~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~L 102 (299)
-.||++|..+|..|+..+..|..|+..|+.+...|+.|+..|
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 468899999999888888777666666666666666665554
No 21
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.69 E-value=0.06 Score=42.27 Aligned_cols=59 Identities=27% Similarity=0.388 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHH---HHHHHHc
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLS-------LRSEIENLNIQY---QQRVRAM 120 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~-------LksE~e~L~~ql---qqrl~~~ 120 (299)
+++.+|.++|+.+=+.+.-|+.|+++|+.+.+.|..++.. |..+..+|+.+. +.||+++
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888877777777777777777766666666666 555666665443 3455543
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.17 E-value=0.15 Score=42.72 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhc--cCCCCCCCChhhhHHH--HHHHHH-------HHHHHHH-------HHHHHHhhhHHHHHHHHHH
Q 022288 30 RDRLNEHFTELGNA--LDPDRPKNDKATILAD--TVQLLK-------DLTSQVE-------KLKTEHAALTEESRELTQE 91 (299)
Q Consensus 30 RdKLNErF~eLrsl--LvP~~~K~DKASIL~D--AI~ylK-------dLr~qVq-------~Lk~en~~L~eE~~eLk~E 91 (299)
-..+|+++.+++.. - |. -..++++||+- .+.-+- .|+.+++ .|+.++..++.+++.++.+
T Consensus 34 A~~vd~km~ei~~~~~~-~~-l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e 111 (138)
T 3hnw_A 34 ASYINNKITEFNKEESY-RR-MSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKE 111 (138)
T ss_dssp HHHHHHHHHHHTTCHHH-HT-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCC-CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999953 1 22 25578888763 222222 3333333 3333344444555555555
Q ss_pred HHHHHHHHhhhHHHHHHHHHHH
Q 022288 92 KNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 92 kNELRdEns~LksE~e~L~~ql 113 (299)
..+|++++..|..++-+|+.++
T Consensus 112 ~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 112 IKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666666665555444
No 23
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.06 E-value=0.13 Score=43.10 Aligned_cols=46 Identities=20% Similarity=0.321 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIE 107 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e 107 (299)
+-+.+|+.++..++..++.+..++.+|+.+.++|+.++..|.+++.
T Consensus 89 kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 89 KEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555656666666666666666666666666655554
No 24
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=94.32 E-value=0.1 Score=40.15 Aligned_cols=68 Identities=19% Similarity=0.196 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCCccCCCccccCCCCC
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMVPWAAMDHSVMMAPPSY 137 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw~~~dps~~~~pp~y 137 (299)
+|..++.+|+..++-++.-+++|....-+...+...|+.++..|. +|++.+-+-..-++.----||||
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~----~rl~~~~~~~~~~~~~e~~PPHY 78 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL----EDLGKVRSTLFADAADEPPPPHY 78 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhccCCCCCCCCCccCC
Confidence 455666666666666666666666666666666666666666665 44444322111123323346676
No 25
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=94.01 E-value=0.11 Score=37.88 Aligned_cols=36 Identities=31% Similarity=0.460 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 61 VQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLR 96 (299)
Q Consensus 61 I~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELR 96 (299)
..++.+|..+++.|+.+|..|..++..|+.|+..|+
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777666666666555555554
No 26
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=93.99 E-value=0.25 Score=49.99 Aligned_cols=85 Identities=20% Similarity=0.167 Sum_probs=63.7
Q ss_pred HHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHH----
Q 022288 32 RLNEHFTELGNALDPDRPKNDKATILADTVQLLK-DLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEI---- 106 (299)
Q Consensus 32 KLNErF~eLrslLvP~~~K~DKASIL~DAI~ylK-dLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~---- 106 (299)
.++..|..+-.+| +.+...+.=+..++..|- +|+.+++.|+.++..--..++.|+.-+.+++.+.++|+.+|
T Consensus 82 dseqy~k~~~E~L---r~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqi 158 (562)
T 3ghg_A 82 DSHSLTTNIMEIL---RGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKI 158 (562)
T ss_dssp HHHHHHHHHHHTT---SSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH---HHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666654 123333334555666666 99999999999887766899999999999999999999998
Q ss_pred --------------------HHHHHHHHHHHHH
Q 022288 107 --------------------ENLNIQYQQRVRA 119 (299)
Q Consensus 107 --------------------e~L~~qlqqrl~~ 119 (299)
+.+|.||+|-.+.
T Consensus 159 rsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a~ 191 (562)
T 3ghg_A 159 RSCRGSCSRALAREVDLKDYEDQQKQLEQVIAK 191 (562)
T ss_dssp HHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred HhccccccchheeecchHHHHHHHHHHHHHhhc
Confidence 6788888876655
No 27
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=93.88 E-value=0.083 Score=38.10 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q 022288 59 DTVQLLKDLTS 69 (299)
Q Consensus 59 DAI~ylKdLr~ 69 (299)
+|++|||+-..
T Consensus 2 ~AlefIk~~LG 12 (53)
T 2yy0_A 2 SALDFLKHHLG 12 (53)
T ss_dssp -----------
T ss_pred cHHHHHHHHcC
Confidence 68888887643
No 28
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.63 E-value=0.14 Score=54.63 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=10.2
Q ss_pred HHHHHHHHhhhHHHHHHHHH
Q 022288 92 KNDLREEKLSLRSEIENLNI 111 (299)
Q Consensus 92 kNELRdEns~LksE~e~L~~ 111 (299)
.+.|++||..|+.+++.|+.
T Consensus 1025 v~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1025 VSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555553
No 29
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=93.47 E-value=0.17 Score=36.58 Aligned_cols=27 Identities=22% Similarity=0.307 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELT 89 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk 89 (299)
|+.+|+.++..|+.+|..|..++..|+
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~ 49 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLR 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443333333
No 30
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=93.42 E-value=0.48 Score=40.98 Aligned_cols=81 Identities=16% Similarity=0.099 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhhccCCCCCCC-ChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 022288 30 RDRLNEHFTELGNALDPDRPKN-DKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIEN 108 (299)
Q Consensus 30 RdKLNErF~eLrslLvP~~~K~-DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~ 108 (299)
|++|--+|.+|-.- |+.... .=+|=+.+-+..|..|+.++..|+..+..|.+++++-......|+||...|..+..-
T Consensus 37 Rd~~E~~~~~l~~e--~~~~~~~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~ 114 (152)
T 3a7p_A 37 RNDKEAHLNELFQD--NSGAIGGNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNV 114 (152)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHh--hccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666553 221111 012223344556667777777777766666666655555555666776666666655
Q ss_pred HHHH
Q 022288 109 LNIQ 112 (299)
Q Consensus 109 L~~q 112 (299)
++..
T Consensus 115 lE~k 118 (152)
T 3a7p_A 115 LQQK 118 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 31
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=92.76 E-value=0.24 Score=38.18 Aligned_cols=50 Identities=20% Similarity=0.154 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 61 VQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 61 I~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
+.-|.+|+..+++-.+++...++.+++|..+..+..++...|++++++++
T Consensus 18 mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 18 RGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44588999999888888888899999999999999999999999998874
No 32
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=92.74 E-value=0.91 Score=35.65 Aligned_cols=54 Identities=26% Similarity=0.312 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh------------hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 61 VQLLKDLTSQVEKLKTEHAA------------LTEESRELTQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 61 I~ylKdLr~qVq~Lk~en~~------------L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlq 114 (299)
|+-|+.|..+...|+.++.. .+.++.+|+....++..|+..|..|+++|+.++.
T Consensus 22 IdKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~ 87 (93)
T 3s4r_A 22 IDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIM 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544332 2567788888888888888888888888876654
No 33
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=92.49 E-value=0.6 Score=35.83 Aligned_cols=53 Identities=13% Similarity=0.240 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRV 117 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl 117 (299)
..+..+++.++.+|..|+..+..|.....+-+.+-..++.|+.++..+|-.++
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI 55 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKI 55 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 35667777788888888888888888877777777777777777776655544
No 34
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=92.45 E-value=0.16 Score=36.86 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEK 92 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~Ek 92 (299)
+++.+|+.+|..|+.+|..|..++..|+.|.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554444444444333
No 35
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=92.41 E-value=0.38 Score=34.48 Aligned_cols=43 Identities=23% Similarity=0.425 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIEN 108 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~ 108 (299)
-|+..+.+|+..|-.|+.+-..|..-...||||..+|.+|...
T Consensus 7 ylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenevas 49 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVAS 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 3778899999999888877777877788888888888877643
No 36
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=92.17 E-value=0.57 Score=34.33 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRS 104 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~Lks 104 (299)
+|=..=+.+++.|+.+...|..++.+|+.+.+.|+.|+..|+.
T Consensus 16 R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 16 RYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444444444443
No 37
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=92.01 E-value=0.39 Score=34.62 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=16.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 78 HAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 78 n~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
+..|+.+++.|..+..+|+.+...|+.|+..|.
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555444
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.30 E-value=0.52 Score=44.97 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 83 EESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 83 eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
.+..+++....+.++....|+.|+..+..++++.+...
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444455555566666666666665544
No 39
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=91.09 E-value=0.75 Score=37.58 Aligned_cols=63 Identities=16% Similarity=0.210 Sum_probs=48.1
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 51 NDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRV 117 (299)
Q Consensus 51 ~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl 117 (299)
++|.+.+.. |.-|+..++++++.+..+.-+.++...+..-++.....|+.++..|+.||.+|=
T Consensus 23 NEKsal~Yq----VdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD 85 (103)
T 4h22_A 23 NEKTNFMYQ----VDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQRE 85 (103)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345554432 445666777788888888888888888888888888999999999998887763
No 40
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=90.93 E-value=0.84 Score=36.94 Aligned_cols=30 Identities=33% Similarity=0.420 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQE 91 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~E 91 (299)
+-+..|+.+|+.|+.++..|.++++.|..+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777666554
No 41
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=90.88 E-value=0.2 Score=36.07 Aligned_cols=30 Identities=27% Similarity=0.417 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQE 91 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~E 91 (299)
.||.+|..+|..|+.+|..|..++..|+.+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666665555555555443
No 42
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=90.80 E-value=0.54 Score=33.00 Aligned_cols=35 Identities=29% Similarity=0.460 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLR 96 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELR 96 (299)
.||.+|..++.+|+..|..|++.+..|..|-.-||
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 48999999999999999888888887777765555
No 43
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=90.79 E-value=0.84 Score=33.59 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 83 EESRELTQEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 83 eE~~eLk~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
+.+.+|..+..+|..||..|+.+++.|..++.+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~~ 62 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVGE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555555666666666677766665554
No 44
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=90.38 E-value=0.38 Score=34.86 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 80 ALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 80 ~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
.|+.++..|..+..+|+.+...|+.++..|
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 45
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=90.13 E-value=5.6 Score=39.83 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEI 106 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~ 106 (299)
|..+|+.++.-|+..+..--..++.|+.-..+++.+.++|+.+|
T Consensus 112 ~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 112 VSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666665444322666777777777777788887777
No 46
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=90.04 E-value=2.5 Score=29.73 Aligned_cols=52 Identities=25% Similarity=0.258 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
.-+..|+..+..++.....+..+...++...+.+..+....+.+|.+++.|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 5 NTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666555555666666666666666666666666666665443
No 47
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=90.02 E-value=1 Score=35.04 Aligned_cols=52 Identities=19% Similarity=0.312 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRV 117 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl 117 (299)
++..+++.++.+|..|+..+..|.....+-+.+-..++.|+.++..+|-.+|
T Consensus 10 ~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI 61 (79)
T 3cvf_A 10 ETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSL 61 (79)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3455667777777777777777777777777777777777777665555444
No 48
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=89.87 E-value=4.7 Score=35.23 Aligned_cols=85 Identities=21% Similarity=0.381 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHHHHHHHHHHHhh
Q 022288 29 RRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTE-------ESRELTQEKNDLREEKLS 101 (299)
Q Consensus 29 RRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~e-------E~~eLk~EkNELRdEns~ 101 (299)
-|+.|-.-+..|.+.|.-.+ .+ ..-+-+.+++|+.++..|..+++.+.. +.+.|.-..+.|..|++.
T Consensus 63 ~k~~Leke~~~LQa~L~qEr--~~----r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~ 136 (168)
T 3o0z_A 63 SKSQTDKDYYQLQAILEAER--RD----RGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNN 136 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555556666666553322 11 233445556666666666655555544 444444444555555555
Q ss_pred hH----HHHHHHHHHHHHHHHH
Q 022288 102 LR----SEIENLNIQYQQRVRA 119 (299)
Q Consensus 102 Lk----sE~e~L~~qlqqrl~~ 119 (299)
+. -++-.|++-|+|-+++
T Consensus 137 ~eid~~~eLKalQ~~~eqE~~~ 158 (168)
T 3o0z_A 137 LEIDLNYKLKSLQQRLEQEVNE 158 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 54 2344555555555543
No 49
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=89.74 E-value=2 Score=33.84 Aligned_cols=55 Identities=27% Similarity=0.318 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 59 DTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 59 DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
+-|.-|++|+-+|.+|+.+-..-+-..+.-+.|...|+.....=.+++.+|+.|+
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5688899999999999877766666666666677777777777777888887665
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.67 E-value=3.5 Score=39.31 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=15.4
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 76 TEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 76 ~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
++...++..+++.+....||++|++.++.++..|+
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444
No 51
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=89.44 E-value=1.2 Score=36.71 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022288 56 ILADTVQLLKDLTSQVEKLKTEHAAL 81 (299)
Q Consensus 56 IL~DAI~ylKdLr~qVq~Lk~en~~L 81 (299)
|..++=+||.+|+.+|..|+.+++.-
T Consensus 34 l~~E~q~~v~ql~~~i~~Le~eL~e~ 59 (120)
T 3i00_A 34 MKTESQRVVLQLKGHVSELEADLAEQ 59 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666655555433
No 52
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=89.36 E-value=1.2 Score=31.98 Aligned_cols=37 Identities=24% Similarity=0.470 Sum_probs=21.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 73 KLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 73 ~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
+|+..+..|...+..|..-..+.|++...|+.++++|
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444455555556666677777777776
No 53
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=89.23 E-value=1.4 Score=36.96 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=20.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 94 DLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 94 ELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
.++.+...|-.++.++..+++.+|+.+
T Consensus 78 ~~k~~le~l~~~i~~~a~~ik~~Lk~l 104 (180)
T 1s94_A 78 QMKEELEELMTDIKRTANKVRGKLKTI 104 (180)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777788888888888888776
No 54
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=89.15 E-value=1.1 Score=32.70 Aligned_cols=31 Identities=35% Similarity=0.459 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 80 ALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 80 ~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
.|+.++..|..+..+|+.+...|+.++..|.
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 55
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=89.10 E-value=0.47 Score=34.94 Aligned_cols=32 Identities=28% Similarity=0.360 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 61 VQLLKDLTSQVEKLKTEHAALTEESRELTQEK 92 (299)
Q Consensus 61 I~ylKdLr~qVq~Lk~en~~L~eE~~eLk~Ek 92 (299)
..++.+|..+|+.|+.+|..|..++..|+.+.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888888877777777666554
No 56
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=88.98 E-value=0.52 Score=43.50 Aligned_cols=41 Identities=22% Similarity=0.464 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 70 QVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 70 qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
++++|+.++..|.+.+++|+.+.++++.|...|+.|+++|+
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566666677777777788888888888888888888885
No 57
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=88.21 E-value=2.3 Score=34.89 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEES 85 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~ 85 (299)
.++|+..++.|..+++.+....
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~ 26 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKL 26 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444433
No 58
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=88.21 E-value=0.86 Score=34.52 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=24.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 77 EHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 77 en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlq 114 (299)
.+..|+.++.+|..+...|..||..|+.++..|+.++.
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666667777777777777776654
No 59
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=88.17 E-value=0.6 Score=37.79 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 82 TEESRELTQEKNDLREEKLSLRSEIENLNIQYQQR 116 (299)
Q Consensus 82 ~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqr 116 (299)
.+++..|+.++.+|+.|+..|+.+++.|+.+|.++
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788888888888888888888888777654
No 60
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=88.00 E-value=3.3 Score=32.63 Aligned_cols=45 Identities=20% Similarity=0.364 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
.|..+++.|+.+-..|..++..|..++..|..+...++.+..+|.
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~ 52 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLD 52 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444444444444444433
No 61
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=87.56 E-value=3.3 Score=36.69 Aligned_cols=19 Identities=37% Similarity=0.417 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 022288 63 LLKDLTSQVEKLKTEHAAL 81 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L 81 (299)
-+++|+.++..|+.+++.+
T Consensus 57 ~~~~L~~~~~~L~~E~e~~ 75 (189)
T 2v71_A 57 RNRDLQADNQRLKYEVEAL 75 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 62
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=87.48 E-value=3.7 Score=36.51 Aligned_cols=38 Identities=13% Similarity=0.227 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKND 94 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNE 94 (299)
+.=++.-+..|+.++..|..+|..|+.+.+.|..+..+
T Consensus 127 fd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~ 164 (213)
T 1ik9_A 127 IAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEK 164 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444433333
No 63
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=87.30 E-value=5.3 Score=32.34 Aligned_cols=36 Identities=11% Similarity=0.208 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 80 ALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 80 ~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
.+..++..+..+...++.+...++.++.+++.++..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (284)
T 1c1g_A 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH 276 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444433
No 64
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=87.29 E-value=2.7 Score=32.68 Aligned_cols=30 Identities=10% Similarity=0.187 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 81 LTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 81 L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
|...++.|+.|..+||..+..+.-+++.|+
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~ 54 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVV 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 65
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=87.12 E-value=3.8 Score=32.14 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 85 SRELTQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 85 ~~eLk~EkNELRdEns~LksE~e~L~~qlq 114 (299)
..++..+..+|..||..|+.+++.|+.+++
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555566666665555554
No 66
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=86.97 E-value=4.9 Score=32.67 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 55 TILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 55 SIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
..|.||-+.+..|..+-..|+..+..|.+...+.....++|..++..|..++..|+.++
T Consensus 62 ~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 62 DNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666666666665555555555555544444444444444444444444444443
No 67
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=86.93 E-value=4.7 Score=32.68 Aligned_cols=6 Identities=0% Similarity=0.224 Sum_probs=2.1
Q ss_pred HHHHHH
Q 022288 70 QVEKLK 75 (299)
Q Consensus 70 qVq~Lk 75 (299)
++..++
T Consensus 49 ~~~~~~ 54 (284)
T 1c1g_A 49 KLKATE 54 (284)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 68
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=86.40 E-value=0.84 Score=42.16 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=24.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 78 HAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 78 n~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
+..|+.++..|.....-|.++...++.|+.+|+.|+++
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666444444777888888888888766643
No 69
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=86.21 E-value=1.7 Score=41.47 Aligned_cols=51 Identities=22% Similarity=0.261 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
..|+++++.|+++...|+++++.++.+..+|.++.........+|-+++|.
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~e 56 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQE 56 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666655544444444555555544
No 70
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=86.15 E-value=3.4 Score=30.18 Aligned_cols=46 Identities=26% Similarity=0.391 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
-+|-.||+.|+.||..|..|...=....+.|..|..-+|.=+..|+
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 4688899999999988888877777777777777776666555554
No 71
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=86.11 E-value=2.1 Score=38.05 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhH
Q 022288 69 SQVEKLKTEHAALTEESRELTQEKNDLREEKLSLR 103 (299)
Q Consensus 69 ~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~Lk 103 (299)
.+++.|+.+...+...+..++.+..+++.+...++
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e 66 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNE 66 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 72
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=86.08 E-value=0.92 Score=32.60 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022288 83 EESRELTQEKNDLREEKLSLRSEIENLNI 111 (299)
Q Consensus 83 eE~~eLk~EkNELRdEns~LksE~e~L~~ 111 (299)
.+++.|++|..+||.+...|+.+++.|..
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555543
No 73
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=85.61 E-value=3.5 Score=29.77 Aligned_cols=41 Identities=7% Similarity=0.251 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 70 QVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 70 qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
++..|...+.+|..+++.|..+.+.||.+...-+.|-.|-+
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN 45 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARAN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555566666666666666666667777777766
No 74
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=85.46 E-value=4.6 Score=32.63 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 81 LTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 81 L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
|...+++...-+-+|......|+.|+.=|..-+++-|+.+
T Consensus 74 lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~eL 113 (119)
T 3ol1_A 74 FRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQEL 113 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444555555555555554455554443
No 75
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=85.37 E-value=1.6 Score=41.28 Aligned_cols=53 Identities=9% Similarity=0.105 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022288 59 DTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNI 111 (299)
Q Consensus 59 DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ 111 (299)
++|.=++.|++++.+|+..+....+++..|+.....++.....|+.++..|+.
T Consensus 2 ~~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 2 SGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777888888888777777777777777766666666666665555553
No 76
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=85.23 E-value=1.5 Score=34.53 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLR 96 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELR 96 (299)
.++..++..|+.+|..|..++..|+.|...|+
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666555555555555544444
No 77
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=84.96 E-value=5.7 Score=34.69 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=7.3
Q ss_pred HHHHHhhhHHHHHHHHH
Q 022288 74 LKTEHAALTEESRELTQ 90 (299)
Q Consensus 74 Lk~en~~L~eE~~eLk~ 90 (299)
|+..+..|.+|++.++.
T Consensus 95 lq~ri~~L~~El~~~k~ 111 (168)
T 3o0z_A 95 LQARITSLQEEVKHLKH 111 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 78
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=84.79 E-value=5.4 Score=32.61 Aligned_cols=54 Identities=28% Similarity=0.425 Sum_probs=31.8
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHHHHHHHHHHHhhhHHHHH
Q 022288 50 KNDKATILADTVQLLKDLTSQVEKLKTEHAALTE-------ESRELTQEKNDLREEKLSLRSEIE 107 (299)
Q Consensus 50 K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~e-------E~~eLk~EkNELRdEns~LksE~e 107 (299)
.|.|.-++.+-+ +|...+..|++++..|+. .+.+|..|...|+.||+.|+.|-+
T Consensus 29 ~mSKqELIqEYl----~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 29 NMSKQELIKEYL----ELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp TSCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777766554 456666667666666665 455555555555555555554443
No 79
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=84.75 E-value=2.4 Score=35.44 Aligned_cols=26 Identities=31% Similarity=0.279 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHH
Q 022288 81 LTEESRELTQEKNDLREEKLSLRSEI 106 (299)
Q Consensus 81 L~eE~~eLk~EkNELRdEns~LksE~ 106 (299)
|+.||..|+++..+.-.|..+|+.+.
T Consensus 76 LqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 76 LEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333333333333333333333333
No 80
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.69 E-value=8.7 Score=31.02 Aligned_cols=59 Identities=17% Similarity=0.369 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-----------HHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQ-----------EKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~-----------EkNELRdEns~LksE~e~L~~qlqq 115 (299)
+.+.-+.|..|+.+++.|+..+..|+..+.++.. ...+|..+...++.++.+...+||.
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~ 107 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQE 107 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4444555556666666666666666655544433 2334444444455555544444443
No 81
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=84.51 E-value=5.3 Score=34.49 Aligned_cols=81 Identities=20% Similarity=0.142 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhhccCCC----CCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 022288 31 DRLNEHFTELGNALDPD----RPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEI 106 (299)
Q Consensus 31 dKLNErF~eLrslLvP~----~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~ 106 (299)
.++++.|.++..+ ++. .-++... .|...-..+..|+.++..|+.++..-...+..|..|.-.|+-+...+...+
T Consensus 42 ~~~~~l~~e~~~~-~~~~~vs~~~~~~~-~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl 119 (152)
T 3a7p_A 42 AHLNELFQDNSGA-IGGNIVSHDDALLN-TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKL 119 (152)
T ss_dssp ----------------CHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccC-CCcccccchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999876 443 1122222 344445556677777777776554433334444444444444444444444
Q ss_pred HHHHHHH
Q 022288 107 ENLNIQY 113 (299)
Q Consensus 107 e~L~~ql 113 (299)
.+|+.+.
T Consensus 120 ~kLq~EN 126 (152)
T 3a7p_A 120 SDLKKEH 126 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 82
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=84.38 E-value=6.7 Score=30.14 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 86 RELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 86 ~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
.++.....+|..||..|+.+++.|+.++
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~ 66 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSREL 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555444
No 83
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.30 E-value=6.4 Score=31.96 Aligned_cols=59 Identities=19% Similarity=0.294 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-----------HHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQ-----------EKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~-----------EkNELRdEns~LksE~e~L~~qlqq 115 (299)
+.+.-+.|..|+.+++.|+..+..|+..+.++.. ...+|..+...++.++.+...+||.
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~ 109 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKI 109 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666666666666655544433 2334444444455555444444443
No 84
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=84.26 E-value=3.3 Score=29.77 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSL 102 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~L 102 (299)
+-+.+|+.++..|...|..|.+..+.-+.+...|+++...|
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34568899999999999999999999999988888887765
No 85
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=84.22 E-value=15 Score=35.97 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIE 107 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e 107 (299)
+|..+|+.++.-|+..+..--..++.|+..+.+++.+.++|+.+|+
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888876654333888888888889999999988873
No 86
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=84.07 E-value=5.2 Score=39.55 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 84 ESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 84 E~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
+..+|..+..+|+++...|+.+...++.+++..+..+
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~i 153 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRL 153 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4446666667777777777777777888887777665
No 87
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=84.04 E-value=6 Score=31.36 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=27.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 77 EHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 77 en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
+...|+.+...|..++..|+.|+..+..|++.+...|
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356777777788888888888888888887776444
No 88
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.84 E-value=8.8 Score=30.91 Aligned_cols=54 Identities=19% Similarity=0.221 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022288 59 DTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQ 112 (299)
Q Consensus 59 DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~q 112 (299)
++-+-|.+|+.++...+.+...|..+..+-+..+-+...++..+..|++.|-..
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTas 62 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 62 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444333333334444444444444444333
No 89
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=83.67 E-value=4.1 Score=36.10 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=11.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 022288 71 VEKLKTEHAALTEESRELTQEKNDLREEK 99 (299)
Q Consensus 71 Vq~Lk~en~~L~eE~~eLk~EkNELRdEn 99 (299)
++.++..+..|...+..|+.|..++|+..
T Consensus 51 L~~~Ek~~~~L~~~~~~L~~E~e~~k~K~ 79 (189)
T 2v71_A 51 LVQAEQRNRDLQADNQRLKYEVEALKEKL 79 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444433333333
No 90
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=83.62 E-value=4.6 Score=43.26 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVR 118 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~ 118 (299)
-++.+..+...++..+..|++|+.+|+.+..++..|+..|+..+.+++.+|++.+.
T Consensus 971 ~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~ 1026 (1080)
T 2dfs_A 971 RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVS 1026 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444455555555555555554555444444444444444443
No 91
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=83.54 E-value=5.6 Score=27.87 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 60 TVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 60 AI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
.-+++.++.+++..++.+...+...++.+..+.+..+++...++.+++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~y 59 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNEYY 59 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566677777788888888888888888888888888888888887653
No 92
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=83.22 E-value=2.7 Score=32.34 Aligned_cols=40 Identities=20% Similarity=0.298 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLR 96 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELR 96 (299)
|...++-|+...+.|++|+.++....+++.+|+.+.+.+|
T Consensus 28 L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 28 LQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455555666666666666666666666666665554
No 93
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=82.69 E-value=4.7 Score=39.15 Aligned_cols=75 Identities=11% Similarity=0.113 Sum_probs=49.2
Q ss_pred HHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 34 NEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 34 NErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
++....|.....+. .+ -+......++++.+.+.+++.+|+..+...+++++.|+...+.++.....|+..+..|+
T Consensus 58 ~~Lvk~iq~~~~~~-Q~-~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 58 EYLIQHIKTIYPSE-KQ-TLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHSCSS-TT-CCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccc-cC-CCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34444444443342 23 34445566799999999999999888877788888887777666655555555555444
No 94
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=82.44 E-value=2 Score=33.13 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLR 96 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELR 96 (299)
.++..++..|+.+|..|..++..|+.|...|+
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666655555554
No 95
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=82.27 E-value=13 Score=27.89 Aligned_cols=57 Identities=7% Similarity=0.102 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
+..|.+-+.++..++...+.....+.+++..|+.....|.++...+...+...+..|
T Consensus 15 ~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 15 KENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666666655555555555555554444433
No 96
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=82.24 E-value=10 Score=30.91 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCCc
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMVPWA 124 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw~ 124 (299)
+|-.+--.|+..++.+++|.+-|++...+.-.....|..++++|..+.|.-+...-.|.
T Consensus 34 ELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 34 ELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45555556777777788888777776555555566777777777777766665555554
No 97
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=82.21 E-value=5 Score=28.44 Aligned_cols=42 Identities=26% Similarity=0.370 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNI 111 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ 111 (299)
.+.+|..+|..|+.+|++|....-. -+|-..-|..||.+|..
T Consensus 4 lvaqlenevaslenenetlkkknlh-------kkdliaylekeianlrk 45 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLH-------KKDLIAYLEKEIANLRK 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhccc-------HHHHHHHHHHHHHHHHH
Confidence 5677888888888887776543211 12333455555555543
No 98
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=81.87 E-value=4.4 Score=38.97 Aligned_cols=51 Identities=16% Similarity=0.192 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
..|++++.+|++....|+.+++.++.|..+++++......+..+|-++++.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~ 56 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMD 56 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666666666666655544444444555555543
No 99
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=81.58 E-value=8.3 Score=38.18 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 85 SRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 85 ~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
..+|..|..+|+++...|+.++..++.+++..+..+
T Consensus 73 ~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~i 108 (485)
T 3qne_A 73 AKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQV 108 (485)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456777888888888888888889998888877775
No 100
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=81.44 E-value=5.3 Score=30.75 Aligned_cols=63 Identities=14% Similarity=0.260 Sum_probs=39.3
Q ss_pred HHHHHHHhhhccCCCCC---CCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 33 LNEHFTELGNALDPDRP---KNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLR 96 (299)
Q Consensus 33 LNErF~eLrslLvP~~~---K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELR 96 (299)
+..-..+|..+ +++.. ..+.+-|..+--+++..|..+++.++..+..|.....++..+.++|+
T Consensus 39 ~~~~~~eL~~l-~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk 104 (117)
T 2zqm_A 39 AKKALDEIESL-PDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELT 104 (117)
T ss_dssp HHHHHHHHHTS-CTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667654 55542 55666666666677777777777777766666666666555554444
No 101
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=81.17 E-value=15 Score=30.25 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=35.5
Q ss_pred CCCChhhhHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 49 PKNDKATILADTVQLLKDLTSQVEKLKTEH----AALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 49 ~K~DKASIL~DAI~ylKdLr~qVq~Lk~en----~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
.+.+|-.++..=-+-|..|+.+++.++.+. ..|...+..|..|..+-|..+.....|.+.|..++..
T Consensus 9 ~~d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 9 NKDEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555544455556666666555333 3455555556666555555544555555555555543
No 102
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=81.15 E-value=9.2 Score=37.12 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 85 SRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 85 ~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
..+|..+..+|+++...|+.++..++.+++..+..+
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 106 (455)
T 2dq0_A 71 VDELLAKSREIVKRIGELENEVEELKKKIDYYLWRL 106 (455)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456777888888888888888889998888887776
No 103
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=80.99 E-value=2.6 Score=32.86 Aligned_cols=31 Identities=29% Similarity=0.290 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 80 ALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 80 ~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
.|-.++++|+.|+.-|+.|..+++.-+.+++
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~ 64 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLE 64 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555554
No 104
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=80.66 E-value=1.9 Score=32.41 Aligned_cols=27 Identities=15% Similarity=0.340 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 022288 80 ALTEESRELTQEKNDLREEKLSLRSEI 106 (299)
Q Consensus 80 ~L~eE~~eLk~EkNELRdEns~LksE~ 106 (299)
.|+.++..|..|+++|+.++..|+.++
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 105
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=80.64 E-value=1.3 Score=33.52 Aligned_cols=19 Identities=26% Similarity=0.552 Sum_probs=8.6
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q 022288 92 KNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 92 kNELRdEns~LksE~e~L~ 110 (299)
..+|+.++..||.+|.++-
T Consensus 46 l~~LKk~KL~LKDeI~~lL 64 (76)
T 1zhc_A 46 VSHMKKQKLKLKDEIHSMI 64 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHH
Confidence 3344444444444444443
No 106
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=80.46 E-value=6.2 Score=36.99 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 83 EESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 83 eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
.+.+....+.+.|++|+.+|+.+++++..++
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKLNGEADLAL 465 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhhhh
Confidence 3334444444445555555555555544443
No 107
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=80.38 E-value=1.4 Score=27.97 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESREL 88 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eL 88 (299)
|+-+|+.++-+|+.+...|..|++.|
T Consensus 1 yvyqlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 1 YVYQLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHhHHHHHHHHHhcc
Confidence 34456666666655555555544443
No 108
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=79.85 E-value=12 Score=35.33 Aligned_cols=75 Identities=21% Similarity=0.308 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHH-------HHHHHHH-hhhHHHHHHHHHHHHHHH
Q 022288 25 REKLRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQV-------EKLKTEH-AALTEESRELTQEKNDLR 96 (299)
Q Consensus 25 rERrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qV-------q~Lk~en-~~L~eE~~eLk~EkNELR 96 (299)
.-|++++.|+.++..|... +-+--.|-..+.+|+++. +.+-..+ ..|..| ++++.+++++-
T Consensus 21 ~lr~~~eql~~~i~~L~~~----------ap~W~~aq~al~rL~eq~g~~~~ds~~v~~~mq~~Le~E-re~~~~Rd~~a 89 (302)
T 3ibp_A 21 ALRQEQEQLQSRIQSLMQR----------APVWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLERE-REAIVERDEVG 89 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----------ChHHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4577888999999998864 444555666666676664 3443333 456666 88999999988
Q ss_pred HHHhhhHHHHHHHH
Q 022288 97 EEKLSLRSEIENLN 110 (299)
Q Consensus 97 dEns~LksE~e~L~ 110 (299)
..+..|..+|++|-
T Consensus 90 ~~k~~Le~~ierLs 103 (302)
T 3ibp_A 90 ARKNAVDEEIERLS 103 (302)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 88899999998875
No 109
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=79.61 E-value=6.3 Score=28.96 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHH
Q 022288 87 ELTQEKNDLREEKLSLRSEIEN 108 (299)
Q Consensus 87 eLk~EkNELRdEns~LksE~e~ 108 (299)
..+.|..|||...+.|..|++.
T Consensus 53 ~~k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 53 QAKQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444443
No 110
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=79.46 E-value=5.6 Score=31.36 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 86 RELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 86 ~eLk~EkNELRdEns~LksE~e~L 109 (299)
+.|..+...|++|+..||.+.+.|
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL 72 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKEL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444
No 111
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=79.35 E-value=4.2 Score=29.05 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 83 EESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 83 eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
+.+.+|..+...|..||..|+.++..|+.+|
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466677777788888888888888887554
No 112
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=79.27 E-value=6.6 Score=28.32 Aligned_cols=44 Identities=2% Similarity=0.147 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIE 107 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e 107 (299)
|.+|-.+|+.|...+..|..++..|+.+...-++|-.+--..|+
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 66788888888888888888888888887777777666555444
No 113
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=79.18 E-value=7.1 Score=37.40 Aligned_cols=57 Identities=18% Similarity=0.323 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHhhhH--------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 64 LKDLTSQVEKLKTEHAALT--------EESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~--------eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
-++|+.+++.|+.+...+. ++..+|..+..+|+++...|+.+...++.+++..+..+
T Consensus 37 ~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 101 (421)
T 1ses_A 37 VQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQV 101 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4445555555554443332 45567888888899999999999999999998888776
No 114
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=79.08 E-value=6.7 Score=28.26 Aligned_cols=47 Identities=30% Similarity=0.394 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
|++++..+..|+.+...+..++....+|..+|-+-|..|..||..-.
T Consensus 2 l~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYR 48 (59)
T 1gk6_A 2 MKQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYR 48 (59)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45678888888888888888888888899999999999998886543
No 115
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=79.03 E-value=8.6 Score=34.83 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=20.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCCc-cCC
Q 022288 78 HAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMVPWA-AMD 127 (299)
Q Consensus 78 n~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw~-~~d 127 (299)
...+..++.++..++++|+++...|+..+ .-+..+.||. ++|
T Consensus 101 ~~~l~~~~~~l~~~~~~L~~~~~~l~~~~--------~~l~~L~p~~~~ld 143 (357)
T 3rrk_A 101 LRPVASRAEVLGKERAALEEEIQTIELFG--------KAAEKLAALAHGLD 143 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------HHHHHHhhhhccCC
Confidence 33344444444444444444444444441 0133445899 887
No 116
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=78.95 E-value=26 Score=28.86 Aligned_cols=11 Identities=18% Similarity=0.163 Sum_probs=5.6
Q ss_pred cCCCCCCCChh
Q 022288 44 LDPDRPKNDKA 54 (299)
Q Consensus 44 LvP~~~K~DKA 54 (299)
|+|...++++.
T Consensus 14 ~~~~~~~~~~~ 24 (110)
T 2v4h_A 14 LVPRGSHMASM 24 (110)
T ss_dssp CCCTTCCSSCC
T ss_pred CCcchhHhhHH
Confidence 35555555554
No 117
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=78.86 E-value=14 Score=32.62 Aligned_cols=8 Identities=13% Similarity=0.301 Sum_probs=3.9
Q ss_pred CCCCccCC
Q 022288 174 CSTFVPYM 181 (299)
Q Consensus 174 ~~~~~py~ 181 (299)
|.-++=|.
T Consensus 228 CgRIL~~~ 235 (256)
T 3na7_A 228 CGRILYAE 235 (256)
T ss_dssp TCCEEECS
T ss_pred CCeeEEeC
Confidence 55555443
No 118
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=78.78 E-value=15 Score=28.48 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQEKNDLR 96 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELR 96 (299)
+-+|..+++.|+.++..|.-.++++.-+.+.|.
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~ 54 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVV 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443
No 119
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=78.76 E-value=16 Score=30.60 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 85 SRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 85 ~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
+++|..|+..|..+.....+++++|..+.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33343333333333333344444444333
No 120
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=78.59 E-value=25 Score=28.44 Aligned_cols=58 Identities=21% Similarity=0.292 Sum_probs=27.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 53 KATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 53 KASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
.-.++..-+.-=.+|...+..|....+...+.+..|..++..|.++...|+.+++.++
T Consensus 67 ~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 67 AEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444445444444444455555555555555555555555444
No 121
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=78.33 E-value=6.1 Score=32.59 Aligned_cols=78 Identities=19% Similarity=0.286 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHH-------HHHHH
Q 022288 25 REKLRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEH---AALTEESRELT-------QEKND 94 (299)
Q Consensus 25 rERrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en---~~L~eE~~eLk-------~EkNE 94 (299)
+|+.++..||+.-..|..+ . -.|.+-..-+.+|++++..+++.+ .-|...++--+ .....
T Consensus 18 ~~~~~~~ei~~L~~~L~~A--------E--eaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREk 87 (110)
T 2v4h_A 18 GSHMASMQLEDLRQQLQQA--------E--EALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREK 87 (110)
T ss_dssp TCCSSCCHHHHHHHHHHHH--------H--HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHH--------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHH
Confidence 3555555666655555543 1 124555555666666666655522 23333333222 22333
Q ss_pred HHHHHhhhHHHHHHHHHH
Q 022288 95 LREEKLSLRSEIENLNIQ 112 (299)
Q Consensus 95 LRdEns~LksE~e~L~~q 112 (299)
+..||..|..++..|+.|
T Consensus 88 l~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 88 LVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH
Confidence 445555555555555433
No 122
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=78.21 E-value=11 Score=30.27 Aligned_cols=11 Identities=36% Similarity=0.525 Sum_probs=4.8
Q ss_pred hhHHHHHHHHH
Q 022288 80 ALTEESRELTQ 90 (299)
Q Consensus 80 ~L~eE~~eLk~ 90 (299)
.+..|+.+|+.
T Consensus 51 ~ie~ElEeLTa 61 (97)
T 2eqb_B 51 KLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 123
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=78.14 E-value=19 Score=27.99 Aligned_cols=51 Identities=10% Similarity=0.176 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIE 107 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e 107 (299)
...|++-..+|..++..++..+..+.+++..|+.....|.++...+...+.
T Consensus 18 ~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 18 KENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666666665555555554444443333
No 124
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=78.10 E-value=4.8 Score=31.51 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=14.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 78 HAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 78 n~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
+..|...++.+..++..|.-|...|..+++++.
T Consensus 58 i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 58 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444443
No 125
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=78.09 E-value=23 Score=27.78 Aligned_cols=43 Identities=5% Similarity=0.124 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEK 99 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEn 99 (299)
..+|++-..+++.++..++..+..+.+++..|......|.++.
T Consensus 18 ~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~el 60 (101)
T 3u1c_A 18 KENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSR 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666555555555555555544444444433
No 126
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=78.05 E-value=9.1 Score=28.78 Aligned_cols=36 Identities=33% Similarity=0.560 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhH
Q 022288 68 TSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLR 103 (299)
Q Consensus 68 r~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~Lk 103 (299)
.++|+.|-.-|..|.+|++-|..+.+.|+.||..|+
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 455666767777777777777777777777777765
No 127
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=77.95 E-value=2.5 Score=28.47 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhH
Q 022288 80 ALTEESRELTQEKNDLREEKLSLR 103 (299)
Q Consensus 80 ~L~eE~~eLk~EkNELRdEns~Lk 103 (299)
+|+..+.+|-.++.+|++|..+|+
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Confidence 344444444444455554444444
No 128
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=77.75 E-value=4.1 Score=31.39 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=20.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 78 HAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 78 n~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
+..|+.+...+..+++.|+.++..|+.++..|+
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555556666666667777777777766653
No 129
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=77.42 E-value=8.1 Score=29.30 Aligned_cols=63 Identities=14% Similarity=0.285 Sum_probs=43.7
Q ss_pred HHHHHHHhhhccCCCCC---CCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 33 LNEHFTELGNALDPDRP---KNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLR 96 (299)
Q Consensus 33 LNErF~eLrslLvP~~~---K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELR 96 (299)
+..-..+|..+ +++.. ..+.+-|..+--+++..|..+++.++..+..|.....++..+.++|+
T Consensus 34 ~~~~~~EL~~l-~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 34 TQKALEELSRA-ADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHS-CTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677754 66542 55677777777777788888888888777777777777766666655
No 130
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=76.30 E-value=8.9 Score=31.11 Aligned_cols=40 Identities=10% Similarity=0.168 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLR 96 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELR 96 (299)
|..+-.-|.+|+.+|+.|+.++..+......|.....++.
T Consensus 33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e 72 (131)
T 3tnu_A 33 VQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETK 72 (131)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4445556666777777777666666666666665555543
No 131
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=76.25 E-value=1 Score=40.52 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 022288 63 LLKDLTSQVEKLKTEHA 79 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~ 79 (299)
.+.+|+++.++|++++.
T Consensus 20 ~~~~l~~eN~~Lk~e~~ 36 (255)
T 2j5u_A 20 DLKNTYTENQHLKERLE 36 (255)
T ss_dssp ------CTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333444443333
No 132
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=76.23 E-value=8.5 Score=29.73 Aligned_cols=48 Identities=10% Similarity=0.216 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
++|.+.|++|+..++.|+....-|-.|...- ...||..|.+|+.++..
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ss---Q~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESM---QQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcc
Confidence 4678888888888888888877776665443 47888889999866665
No 133
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=76.17 E-value=12 Score=34.95 Aligned_cols=55 Identities=13% Similarity=0.142 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRV 117 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl 117 (299)
..++++.+.++.+.+.+...++++.++.|++.++.+...+..+++...+.||.-+
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 422 MYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence 4445555555555666777788888888888888888888888877776666433
No 134
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=76.11 E-value=6.4 Score=32.16 Aligned_cols=17 Identities=0% Similarity=0.288 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022288 60 TVQLLKDLTSQVEKLKT 76 (299)
Q Consensus 60 AI~ylKdLr~qVq~Lk~ 76 (299)
|++|+.+....+.++..
T Consensus 5 A~~~~~~~~~~l~~~a~ 21 (171)
T 2zvf_A 5 AIEAVEEMERLLREASS 21 (171)
T ss_dssp GTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 135
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=76.01 E-value=8.6 Score=29.24 Aligned_cols=44 Identities=25% Similarity=0.332 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIE 107 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e 107 (299)
+++++..+..|+.+...+..++.....|..+|-+-|..|..||.
T Consensus 28 ~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIa 71 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIA 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44555555555555555655555555666666666666666654
No 136
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=75.84 E-value=4.2 Score=32.93 Aligned_cols=58 Identities=16% Similarity=0.300 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREE----KLSLRSEIENLNIQYQ 114 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdE----ns~LksE~e~L~~qlq 114 (299)
|..+-.-|.+|+.+|+.|+.++..+......|.....++... ...+...+..|+.+++
T Consensus 31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~ 92 (129)
T 3tnu_B 31 LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQ 92 (129)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 666778899999999999999999988888888877776432 2233444444544443
No 137
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=75.81 E-value=8.5 Score=29.67 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 80 ALTEESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 80 ~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
.++.++..|+...+++---+..|..+++.|..++
T Consensus 46 ~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 46 EAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666666666666666544
No 138
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=75.62 E-value=5.2 Score=32.34 Aligned_cols=90 Identities=20% Similarity=0.204 Sum_probs=36.7
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 022288 20 MQKADREKLRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEK 99 (299)
Q Consensus 20 ~~KAerERrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEn 99 (299)
.++...+|.|-..|++.-..|..+-.--..|.+...=|...|.-++...++|.-|+..++--.++-..-+..+..+-.|+
T Consensus 6 ~~~~~~~~~~~~ei~~L~~~L~~AEeaL~~KQ~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERaaREk~~~EK 85 (96)
T 3fx0_A 6 SSVVGSERKRGMQLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLAEKK 85 (96)
T ss_dssp --------------------CCSSTTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34544455555556655555554321122366666666666666666667777777666655555555555555566666
Q ss_pred hhhHHHHHHH
Q 022288 100 LSLRSEIENL 109 (299)
Q Consensus 100 s~LksE~e~L 109 (299)
..|..++..|
T Consensus 86 e~L~~ql~~l 95 (96)
T 3fx0_A 86 ELLQEQLEQL 95 (96)
T ss_dssp SCC-------
T ss_pred HHHHHHHHhh
Confidence 6666666554
No 139
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=75.55 E-value=8.8 Score=30.25 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=13.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhhHH
Q 022288 77 EHAALTEESRELTQEKNDLREEKLSLRS 104 (299)
Q Consensus 77 en~~L~eE~~eLk~EkNELRdEns~Lks 104 (299)
+|..|..++..+..|++.|+.||..|+.
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443
No 140
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=74.89 E-value=14 Score=26.14 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNI 111 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ 111 (299)
+|.+.|++|+..++.|+....-|-.|...- ...||.-+.+||.
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ss---q~KlKqRit~lE~ 44 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNAT---QMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 466777777777766666655554444332 2455555665553
No 141
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=74.79 E-value=25 Score=28.54 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRV 117 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl 117 (299)
|+.|-+.+.+-..++.-....+.+|.+-.+.-+....+-......|+.||..|+.+||.-.
T Consensus 27 LT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 27 LTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777766666666666655444333333333455667777777777776554
No 142
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=74.75 E-value=9.2 Score=36.49 Aligned_cols=56 Identities=14% Similarity=0.149 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 59 DTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 59 DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlq 114 (299)
.--+-|+.|+++.++|+++++.++.++++|+.+..+...+...|.+++..|...++
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIr 62 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIR 62 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeE
Confidence 33456778888888999999999999888888777766677788888887764333
No 143
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=74.72 E-value=9.7 Score=33.97 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQE 91 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~E 91 (299)
|..|..++..|..+++....|++.|+.+
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~q 49 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQ 49 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443333
No 144
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=74.68 E-value=5.3 Score=31.70 Aligned_cols=30 Identities=27% Similarity=0.417 Sum_probs=11.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhhH
Q 022288 74 LKTEHAALTEESRELTQEKNDLREEKLSLR 103 (299)
Q Consensus 74 Lk~en~~L~eE~~eLk~EkNELRdEns~Lk 103 (299)
|+.++..|..+++.|+.|..++..|...+|
T Consensus 53 LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k 82 (90)
T 2wt7_B 53 LENEKTQLIQQVEQLKQEVSRLARERDAYK 82 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 145
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=74.58 E-value=19 Score=27.99 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
-.|-.+..+|.+....|..--+.|-...+||-.|+..|+.|++.++
T Consensus 12 EnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~ 57 (77)
T 2w83_C 12 ENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVK 57 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3334444444444444444445555566666666666666666664
No 146
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=74.54 E-value=7.9 Score=27.78 Aligned_cols=39 Identities=26% Similarity=0.291 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 69 SQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 69 ~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlq 114 (299)
.++.+|++.|..|-+.+.+|..-+.++ ..||++|+.-|+
T Consensus 4 q~l~kLKe~n~~L~~kv~~Le~~c~~~-------eQEieRL~~LLk 42 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHLEFSCSEK-------EQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHH-------HHHHHHHHHHHH
Confidence 467788888888877777775555554 466666664444
No 147
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=74.41 E-value=18 Score=27.59 Aligned_cols=47 Identities=19% Similarity=0.185 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
-+.+++..+..|+.+...+..++....+|..+|-+-|..|..||.--
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatY 75 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAY 75 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 35566666777777777777777777777777777777777777543
No 148
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=74.08 E-value=9.4 Score=29.73 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=18.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 76 TEHAALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 76 ~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
++|..|..++..+..|.+.|++||..|+.=.+..
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~ 67 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555666665555444433
No 149
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=74.01 E-value=11 Score=33.35 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=48.4
Q ss_pred HH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 022288 59 DT-VQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVR 118 (299)
Q Consensus 59 DA-I~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~ 118 (299)
.+ ++++.-+-..+..|+.++..|.++++.|..+.++|..+...+-.+++.+|.+|=++..
T Consensus 121 e~i~elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~ 181 (213)
T 1ik9_A 121 EVIRELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFI 181 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 4788888888888999999999999999999999888888888888888777655443
No 150
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=73.87 E-value=19 Score=31.17 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 91 EKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 91 EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
..++|-+|...|+.++.....+++.+++.-
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~R~k~~~em~Ke 143 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQRVKRDVAMAQA 143 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666677777777776777777554
No 151
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=73.64 E-value=17 Score=27.79 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 68 TSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 68 r~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
...|+.|..+.+.|...++.+..+...+++|-....+.+..|+.+|++
T Consensus 3 ~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~~ 50 (71)
T 1uix_A 3 TSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLLT 50 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555544444445555555543
No 152
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=73.57 E-value=3.7 Score=27.51 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=6.3
Q ss_pred HHHHhhhHHHHHHHH
Q 022288 96 REEKLSLRSEIENLN 110 (299)
Q Consensus 96 RdEns~LksE~e~L~ 110 (299)
..||..|++|+.+|.
T Consensus 13 l~~n~~Le~EV~RLk 27 (33)
T 3m48_A 13 LSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHH
Confidence 333444444444443
No 153
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=73.28 E-value=24 Score=27.63 Aligned_cols=42 Identities=12% Similarity=0.325 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 67 LTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 67 Lr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
+.+++.+.+..|-.++.+. .|....|..|..|+++|+.++..
T Consensus 29 i~EELs~vr~~ni~~eskL-------~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 29 LSREMEAIRTDNQNFASQL-------REAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444 44444555555555555555544
No 154
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=73.07 E-value=16 Score=31.36 Aligned_cols=20 Identities=20% Similarity=0.219 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022288 58 ADTVQLLKDLTSQVEKLKTE 77 (299)
Q Consensus 58 ~DAI~ylKdLr~qVq~Lk~e 77 (299)
-.||.+.-+|..++..+..+
T Consensus 9 I~Ain~qs~LeD~L~~~R~e 28 (154)
T 2ocy_A 9 IESVDKQSHLEEQLNKSLKT 28 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHH
Confidence 33444444444444443333
No 155
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=72.58 E-value=7.2 Score=36.10 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 022288 70 QVEKLKTEHAALTEESRELTQEKNDLRE 97 (299)
Q Consensus 70 qVq~Lk~en~~L~eE~~eLk~EkNELRd 97 (299)
+++.|++++..|.+|+.+|..+++.++.
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4455555555555555555555444443
No 156
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=72.54 E-value=14 Score=28.03 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
..+++..|..|+.+...+..++.....|..+|-+-|..|..||.--.
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYR 53 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777778888888888887777888888888888888886443
No 157
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=72.06 E-value=4.5 Score=27.21 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 83 EESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 83 eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
.++....++.++|+..|..|..++.-|
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 345555566666666666666666544
No 158
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=71.75 E-value=11 Score=36.22 Aligned_cols=56 Identities=20% Similarity=0.391 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHH----------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 65 KDLTSQVEKLKTEHAALTEES----------RELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~----------~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
++|+.+++.|+.+...+..++ .+|..+..+|+++...|+.++..++.+++..+..+
T Consensus 40 r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 105 (425)
T 2dq3_A 40 REIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWI 105 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444444555554444333333 45566777788888889999999999998888886
No 159
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=71.62 E-value=31 Score=26.98 Aligned_cols=55 Identities=20% Similarity=0.363 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-------HHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 60 TVQLLKDLTSQVEKLKTEHAALTEESRELTQ-------EKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 60 AI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~-------EkNELRdEns~LksE~e~L~~qlq 114 (299)
++.-|.+|..+-+.|..++..+..+...|.. +.|.++-+...+..+...|++||.
T Consensus 23 L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~ 84 (96)
T 3q8t_A 23 LIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMR 84 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555444444444433 244444444444444455554443
No 160
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=71.58 E-value=10 Score=36.45 Aligned_cols=49 Identities=14% Similarity=0.111 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNI 111 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ 111 (299)
-|.+|++++++|+.++..+.+++.+++.+..+...+...|.+++..|..
T Consensus 11 el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 11 EVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3566666777777777777777777776666655566667777766653
No 161
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=71.54 E-value=5.9 Score=26.97 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhH
Q 022288 83 EESRELTQEKNDLREEKLSLR 103 (299)
Q Consensus 83 eE~~eLk~EkNELRdEns~Lk 103 (299)
.++.+|-.++.+|.+|-.+|+
T Consensus 8 ~kVEeLl~~~~~Le~EV~RL~ 28 (36)
T 1kd8_A 8 AEVEEIESEVWHLENEVARLE 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 333333344444444444433
No 162
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=70.95 E-value=24 Score=30.52 Aligned_cols=37 Identities=22% Similarity=0.226 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHHHHHHH-------HHHhhhHHHHHHHHHHHHH
Q 022288 79 AALTEESRELTQEKNDLR-------EEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 79 ~~L~eE~~eLk~EkNELR-------dEns~LksE~e~L~~qlqq 115 (299)
..|.+++...+.|.+.|- .....|-.|+..|+.++..
T Consensus 88 ~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 88 SALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444442 2234555666666655544
No 163
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=70.33 E-value=26 Score=31.31 Aligned_cols=86 Identities=17% Similarity=0.231 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHH------HHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Q 022288 29 RRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVE------KLKTEHAALTEESRELTQEKNDLREEKLSL 102 (299)
Q Consensus 29 RRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq------~Lk~en~~L~eE~~eLk~EkNELRdEns~L 102 (299)
+.+++.+-+.+.|. +...-|.++|+-++.++..++ +.+.+|..|+-|+.++++..+--.+=|.+|
T Consensus 85 ~~~~i~~~ln~~r~---------~~i~~lk~~Ie~~k~~q~~~~~~~~Lf~~~kEn~al~lEa~yre~~~~v~~EvK~rL 155 (214)
T 2cly_A 85 LNEQKIAQLEEVKQ---------ASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRL 155 (214)
T ss_dssp HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554 344558888998888886654 346788889999988887766666667777
Q ss_pred HHHHHHHHHHHHHHHHHcCCC
Q 022288 103 RSEIENLNIQYQQRVRAMVPW 123 (299)
Q Consensus 103 ksE~e~L~~qlqqrl~~~~pw 123 (299)
...++-=+.+-+..-+.|.-|
T Consensus 156 Dy~v~~e~~~r~~eQ~~mv~w 176 (214)
T 2cly_A 156 DYHISVQNMMRQKEQEHMINW 176 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 776653332222222345445
No 164
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=70.14 E-value=2.6 Score=28.23 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhH
Q 022288 81 LTEESRELTQEKNDLREEKLSLR 103 (299)
Q Consensus 81 L~eE~~eLk~EkNELRdEns~Lk 103 (299)
|++++.+|-.++.+|++|..+|+
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444444444444555555444
No 165
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=70.12 E-value=15 Score=33.22 Aligned_cols=48 Identities=21% Similarity=0.273 Sum_probs=29.7
Q ss_pred HHHHHHHHHHH----HHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 62 QLLKDLTSQVE----KLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 62 ~ylKdLr~qVq----~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
.|-+.|-++-+ +--++|..|..++..|..|++.|+.||..|+.=.+.+
T Consensus 97 ~YWk~lAE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~ 148 (209)
T 2wvr_A 97 QYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 148 (209)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555544432 2225667777777777777777777777777655554
No 166
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=70.08 E-value=15 Score=26.04 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 85 SRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 85 ~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
+..|..|-..|+..|..-+.-|..|+.++
T Consensus 12 vaslenenetlkkknlhkkdliaylekei 40 (49)
T 3he5_A 12 VASLENENETLKKKNLHKKDLIAYLEKEI 40 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccHHHHHhcccHHHHHHHHHHHH
Confidence 33333333334444444444444555443
No 167
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=70.04 E-value=18 Score=29.84 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEK 92 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~Ek 92 (299)
..|..+++.|+..+..|..+.++++.+.
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~ 80 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQDY 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555444444444
No 168
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=69.91 E-value=18 Score=35.78 Aligned_cols=53 Identities=28% Similarity=0.361 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH-----------HHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELTQE-----------KNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk~E-----------kNELRdEns~LksE~e~L~~qlqq 115 (299)
..++|+.+++.|+.+...+..++..++.. ..+|+.|...|+.++..|+.++.+
T Consensus 78 ~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~ 141 (501)
T 1wle_A 78 ELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQ 141 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777777777777766543 347788888888888888766543
No 169
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=69.83 E-value=5.2 Score=27.25 Aligned_cols=18 Identities=39% Similarity=0.527 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 022288 64 LKDLTSQVEKLKTEHAAL 81 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L 81 (299)
+++|...|++|-.++..|
T Consensus 3 MnQLE~KVEeLl~~~~~L 20 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHL 20 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHH
Confidence 344444444444433333
No 170
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=69.83 E-value=14 Score=44.31 Aligned_cols=60 Identities=18% Similarity=0.334 Sum_probs=23.2
Q ss_pred HHhhhccCCCCCCCChhhh----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 38 TELGNALDPDRPKNDKATI----LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREE 98 (299)
Q Consensus 38 ~eLrslLvP~~~K~DKASI----L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdE 98 (299)
.+|..+ .|-.+|..+... |..|-+.++++++++++|++.++.|+++.++...|+..|++|
T Consensus 2001 ~dL~~A-~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e 2064 (3245)
T 3vkg_A 2001 ADLEKA-EPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTE 2064 (3245)
T ss_dssp HCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555 455454444332 233344444444444444444444444444444444444433
No 171
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=69.39 E-value=18 Score=28.45 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESREL 88 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eL 88 (299)
|.+|+.--++|..+|+.+++++..|.+++.+|
T Consensus 33 L~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 33 LYEALKENEKLHKEIEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555544444
No 172
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=69.31 E-value=10 Score=25.82 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHH
Q 022288 79 AALTEESRELTQEKNDLREEKLSLRS 104 (299)
Q Consensus 79 ~~L~eE~~eLk~EkNELRdEns~Lks 104 (299)
.+|+..+.+|-.++.+|.+|-.+|+.
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34556666666666666555555543
No 173
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=69.30 E-value=34 Score=27.50 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELTQEKNDL 95 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNEL 95 (299)
||.+||.+|..+..++..|.-+++.++....++
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~~~~~edf 53 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRL 53 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666655555554444333
No 174
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.97 E-value=6.1 Score=38.07 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 83 EESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 83 eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
.+.+.|..|.+.+++|...|+.++.+++.|+
T Consensus 56 ~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~ 86 (428)
T 4b4t_K 56 KEYELLTLQEDYIKDEQRHLKRELKRAQEEV 86 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555555555555555443
No 175
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=68.83 E-value=27 Score=33.49 Aligned_cols=88 Identities=20% Similarity=0.316 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhhcc-CCCC-CCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHHhhhHHH
Q 022288 30 RDRLNEHFTELGNAL-DPDR-PKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESREL-TQE-KNDLREEKLSLRSE 105 (299)
Q Consensus 30 RdKLNErF~eLrslL-vP~~-~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eL-k~E-kNELRdEns~LksE 105 (299)
=+.+.++|.+|...| .|+. ...+++.-|..-...|+.+-....+++...+.+.+-..-+ -.| +.++.+|...|+.+
T Consensus 5 l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~D~e~~~~a~~e~~~l~~~ 84 (354)
T 3d5a_X 5 LDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLDDPELKEMAKAEREALLAR 84 (354)
T ss_dssp HHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 345677788887754 3543 2334444333333333333333333332222221111000 011 23456777888888
Q ss_pred HHHHHHHHHHHH
Q 022288 106 IENLNIQYQQRV 117 (299)
Q Consensus 106 ~e~L~~qlqqrl 117 (299)
++.|+.+|+.-|
T Consensus 85 ~~~le~~l~~lL 96 (354)
T 3d5a_X 85 KEALEKELERHL 96 (354)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 888886665433
No 176
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=68.82 E-value=35 Score=26.42 Aligned_cols=47 Identities=30% Similarity=0.345 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
|.-|+..-++|+.--..|..-+..|.+|.++|......|+.-.+.|+
T Consensus 27 l~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 27 LNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666666666666666666666655554
No 177
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.76 E-value=6.6 Score=37.85 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
.+|..++.+|+.+++-|..+.++++.|.+.|+.|...++.|+..|+
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444555555555555555566666666666666666777777764
No 178
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=68.60 E-value=4.6 Score=37.41 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 82 TEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 82 ~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
.++++.|+.+..+|++|...|+.+++.+.
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~ 212 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTAN 212 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444444444444444444443
No 179
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=68.48 E-value=10 Score=24.95 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 86 RELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 86 ~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
..|++|...|+.|...||-||.-|.
T Consensus 5 aalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555554443
No 180
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=68.40 E-value=5.6 Score=27.07 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQE 91 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~E 91 (299)
+++|..+|++|-.++..|+.|+.-|+..
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4667777777777666666666655544
No 181
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=68.18 E-value=7.2 Score=26.10 Aligned_cols=22 Identities=5% Similarity=0.081 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 022288 81 LTEESRELTQEKNDLREEKLSL 102 (299)
Q Consensus 81 L~eE~~eLk~EkNELRdEns~L 102 (299)
|+..+.+|-.++.+|.+|..+|
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RL 26 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARI 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 3333333434444444333333
No 182
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=68.14 E-value=14 Score=28.07 Aligned_cols=18 Identities=22% Similarity=0.444 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHhhhH
Q 022288 86 RELTQEKNDLREEKLSLR 103 (299)
Q Consensus 86 ~eLk~EkNELRdEns~Lk 103 (299)
..+..|+..|+.|+..|+
T Consensus 57 ~~l~~e~~~L~~e~~~L~ 74 (80)
T 1nlw_A 57 RKAVHQIDQLQREQRHLK 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 183
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=68.09 E-value=39 Score=26.05 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=10.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 96 REEKLSLRSEIENLNIQYQQRVRA 119 (299)
Q Consensus 96 RdEns~LksE~e~L~~qlqqrl~~ 119 (299)
+.+...|-.++.++...++.+|+.
T Consensus 49 ~~~l~~l~~~i~~~a~~ik~~Lk~ 72 (127)
T 1ez3_A 49 KEELEELMSDIKKTANKVRSKLKS 72 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444
No 184
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=67.93 E-value=21 Score=35.24 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=26.1
Q ss_pred HHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 89 TQE-KNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 89 k~E-kNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
..+ ..+|+++...|+.++..++.+++..+..+
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~i 141 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNV 141 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 566 77788888888888888998888877775
No 185
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=67.77 E-value=11 Score=27.90 Aligned_cols=43 Identities=26% Similarity=0.269 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
+-..++.+|++.|..|-+.+..|...+.+. ..||++|..-|+|
T Consensus 8 Rse~q~~kLKq~n~~L~~kv~~Le~~c~e~-------eQEieRL~~LLkq 50 (58)
T 3a2a_A 8 RSERQLLRLKQMNVQLAAKIQHLEFSCSEK-------EQEIERLNKLLRQ 50 (58)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 345577888888888888877776666554 4566777655544
No 186
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=67.68 E-value=27 Score=26.13 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=22.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 76 TEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 76 ~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
..+.........+..|...|...+..|..++++++.+|..
T Consensus 27 ~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 27 ADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444445555666666666666666666655543
No 187
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=67.60 E-value=6.2 Score=26.54 Aligned_cols=22 Identities=5% Similarity=0.116 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 022288 81 LTEESRELTQEKNDLREEKLSL 102 (299)
Q Consensus 81 L~eE~~eLk~EkNELRdEns~L 102 (299)
|+..+.+|-.++.+|.+|..+|
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHH
Confidence 3333334444444444333333
No 188
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=67.55 E-value=13 Score=34.96 Aligned_cols=52 Identities=15% Similarity=0.073 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 68 TSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRA 119 (299)
Q Consensus 68 r~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~ 119 (299)
...+..|.+++..|+..+.....++..|+.....++..|.+|+.++.+....
T Consensus 4 ~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 4 QKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777778777777777777777766555543
No 189
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=67.16 E-value=33 Score=26.31 Aligned_cols=32 Identities=25% Similarity=0.459 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQEKNDL 95 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~EkNEL 95 (299)
|++||.+|..+..++..|.-+++.++....++
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edf 33 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRL 33 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 45677777777777766666666665554444
No 190
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=66.83 E-value=24 Score=28.28 Aligned_cols=16 Identities=44% Similarity=0.744 Sum_probs=6.6
Q ss_pred HHHHHhhhHHHHHHHH
Q 022288 95 LREEKLSLRSEIENLN 110 (299)
Q Consensus 95 LRdEns~LksE~e~L~ 110 (299)
||.+-.-|.+|+++-.
T Consensus 76 LRnKA~~L~~eLe~F~ 91 (96)
T 1t3j_A 76 LRNKAVQLESELENFS 91 (96)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444443
No 191
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=66.79 E-value=11 Score=28.35 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRS 104 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~Lks 104 (299)
+-+.+|-.+|..|+....... ++..|+.++=.|+||...+-.
T Consensus 24 ~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~lL~ 65 (76)
T 1zhc_A 24 EKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSMII 65 (76)
T ss_dssp HHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHHHH
Confidence 334444444444443333223 555555555555555544433
No 192
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=66.65 E-value=8 Score=25.86 Aligned_cols=22 Identities=18% Similarity=0.042 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 022288 81 LTEESRELTQEKNDLREEKLSL 102 (299)
Q Consensus 81 L~eE~~eLk~EkNELRdEns~L 102 (299)
|+..+.+|..++.+|.+|..+|
T Consensus 5 LEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHH
Confidence 3344444444444444444433
No 193
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=66.52 E-value=51 Score=26.90 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLR 96 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELR 96 (299)
..++-..+..|+.++..|...+..|...+++|.+.-++|.
T Consensus 30 ~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLE 69 (111)
T 2v66_B 30 YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 69 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 3455555666677777777766666666666666655553
No 194
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=66.50 E-value=7.2 Score=26.24 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELT 89 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk 89 (299)
+.+|..+|++|-.++..|+.|+.-|+
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45666666666666665555555443
No 195
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=66.05 E-value=41 Score=25.44 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 84 ESRELTQEKNDLREEKLSLRSEIENLNIQYQQRV 117 (299)
Q Consensus 84 E~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl 117 (299)
+...+.....+|..+...++.++.+...+||.-|
T Consensus 27 ~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Ll 60 (84)
T 1gk4_A 27 EAANYQDTIGRLQDEIQNMKEEMARHLREYQDLL 60 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666666666665544
No 196
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=66.01 E-value=17 Score=35.19 Aligned_cols=83 Identities=18% Similarity=0.344 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhhcc-CCCC-CCC-------ChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHH-HHHHHHHHHHH
Q 022288 29 RRDRLNEHFTELGNAL-DPDR-PKN-------DKATILADTVQLLKDLTSQVEKLKTEHAALTE-ESR-ELTQEKNDLRE 97 (299)
Q Consensus 29 RRdKLNErF~eLrslL-vP~~-~K~-------DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~e-E~~-eLk~EkNELRd 97 (299)
+-+.+.++|.+|...| .|+. ... ...+-|...+..+++|+...+.++.-.+-+.+ +.+ ++ +.++.+
T Consensus 18 ~l~~~~~r~~el~~~l~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~e~D~e~---~~~a~~ 94 (371)
T 1zbt_A 18 QLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQEMIKDASGDPEL---EEMAKE 94 (371)
T ss_dssp HHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHH---HHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCcchhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHH---HHHHHH
Confidence 4456778888887754 4432 122 23455666666666666665555544433322 111 11 234567
Q ss_pred HHhhhHHHHHHHHHHHH
Q 022288 98 EKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 98 Ens~LksE~e~L~~qlq 114 (299)
|...|+.+++.|+.+|+
T Consensus 95 e~~~l~~~l~~le~~l~ 111 (371)
T 1zbt_A 95 ELKNSKVAKEEYEEKLR 111 (371)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77888888888875444
No 197
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=65.42 E-value=14 Score=33.04 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=17.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 94 DLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 94 ELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
+++++...|-.++.++-..++.+|+.+
T Consensus 70 ~~~~~l~~l~~~i~~~~~~i~~~Lk~l 96 (267)
T 1dn1_B 70 KTKEELEELMSDIKKTANKVRSKLKSI 96 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666666665
No 198
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=64.98 E-value=40 Score=26.10 Aligned_cols=55 Identities=15% Similarity=0.174 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHHHHHHhhhHHHHHH-HHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESREL---TQEKNDLREEKLSLRSEIEN-LNIQYQQR 116 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eL---k~EkNELRdEns~LksE~e~-L~~qlqqr 116 (299)
..|++....+++..+-+..+.-|++.+ ...+..+.......|.++.+ |+.+|+.-
T Consensus 34 ~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 34 TTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555566555 13455555555666667776 66666543
No 199
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=64.85 E-value=15 Score=29.75 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=29.8
Q ss_pred hccchHHHH-HHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 19 KMQKADREK-LRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDL 95 (299)
Q Consensus 19 k~~KAerER-rRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNEL 95 (299)
+..|...|+ .||.-|+++.- +.+...++-. +--+..++|-+.|..|+++-=.|+..+..-.-|+++|
T Consensus 15 ~~~k~q~e~EeKkkiLaER~~------pL~id~l~~~----~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL 82 (107)
T 1ytz_T 15 KRGKKQTARETKKKVLAERRK------PLNIDHLNED----KLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTL 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC------CCCCSSSCSS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhCC------CCCCCCCCHH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHH
Confidence 335555565 45555665542 2233333321 2234455555555555554433444333333333333
No 200
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=64.67 E-value=18 Score=28.79 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=16.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 92 KNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 92 kNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
++-|-.+-..|.++.-+++.+|.++.+..
T Consensus 66 keRL~~dF~~l~~~fQ~~qr~y~ek~~e~ 94 (97)
T 1hs7_A 66 NGKLSADFKNLKTKYQSLQQSYNQRKSLF 94 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344455555556666666666666554
No 201
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=64.57 E-value=43 Score=28.40 Aligned_cols=58 Identities=7% Similarity=0.063 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
+..|++-|.+|+.++.+++... ..++..++.. ...+...|++++..|+..++......
T Consensus 18 ~~~alr~ia~l~r~~~~i~~~~---n~eI~~ik~~---~~~~~~~l~~~i~~l~~~l~~y~e~~ 75 (171)
T 2p2u_A 18 AEGALAEIATIDRKVGEIEAQM---NEAIDAAKAR---ASQKSAPLLARRKELEDGVATFATLN 75 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7788888888888888887644 4555555444 45677899999999999998887665
No 202
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=64.39 E-value=10 Score=33.88 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=17.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022288 72 EKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQ 112 (299)
Q Consensus 72 q~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~q 112 (299)
++|..+|..|.++++....|...|+.+.+.|+++...++.+
T Consensus 23 ~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~ 63 (190)
T 4emc_A 23 ANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQ 63 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 33444444444444444444444444444444444333333
No 203
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=64.07 E-value=13 Score=32.89 Aligned_cols=38 Identities=18% Similarity=0.333 Sum_probs=22.8
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 58 ADTVQ-LLKDLTSQVEKLKTEHAALTEESRELTQEKNDL 95 (299)
Q Consensus 58 ~DAI~-ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNEL 95 (299)
.++|+ +|-.|-.++..|+.+|..|+.+.+-|..|-|+.
T Consensus 140 ~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 140 AEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44454 666666667766666666666655555555543
No 204
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=63.94 E-value=87 Score=28.54 Aligned_cols=85 Identities=16% Similarity=0.225 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHH--HHHHhh
Q 022288 26 EKLRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEK--NDL--REEKLS 101 (299)
Q Consensus 26 ERrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~Ek--NEL--RdEns~ 101 (299)
=|.||++|-+++..|..- .|... -|..|+.++.+.+.++...+..+..+++++ .-+ +-.-..
T Consensus 109 ~R~~R~~l~~~I~kLk~k-~P~s~-------------kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~ 174 (234)
T 3plt_A 109 SRDRKEKITDEIAHLKYK-DPQST-------------KIPVLEQELVRAEAESLVAEAQLSNITREKLKAAYSYMFDSLR 174 (234)
T ss_dssp HHHHHHHHHHHHHHHHHH-CTTCT-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-CCCCc-------------hHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 378899999999999875 66542 266888888888887766666776666653 112 222223
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCc
Q 022288 102 LRSEIENLNIQYQQRVRAMVPWA 124 (299)
Q Consensus 102 LksE~e~L~~qlqqrl~~~~pw~ 124 (299)
-.+|+.-|-.++-.+|-...|-.
T Consensus 175 E~aEK~~ila~~gk~Ll~lldd~ 197 (234)
T 3plt_A 175 ELSEKFALIAGYGKALLELLDDS 197 (234)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Confidence 34566666666667776665444
No 205
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=63.88 E-value=7.9 Score=34.92 Aligned_cols=18 Identities=11% Similarity=0.152 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 022288 55 TILADTVQLLKDLTSQVE 72 (299)
Q Consensus 55 SIL~DAI~ylKdLr~qVq 72 (299)
-||+--|.|++.=.++..
T Consensus 124 ~iLSalINF~~FRE~~~~ 141 (250)
T 2ve7_C 124 RFLSGIINFIHFREACRE 141 (250)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666665444433
No 206
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=63.71 E-value=18 Score=28.88 Aligned_cols=45 Identities=16% Similarity=0.202 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHhhhHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQE----KNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~E----kNELRdEns~LksE~e~L~ 110 (299)
+|=..+..+++++.. +...+-+|... |....+|..+||.|++...
T Consensus 40 eyE~ki~~Qi~Emq~----Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r~ 88 (92)
T 3vp9_A 40 DYDFKMNQQLAEMQQ----IRNTVYERELTHRKMKDAYEEEIKHLKLGLEQRD 88 (92)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred hHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455556666665554 33333333333 2333456666666666544
No 207
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=63.52 E-value=28 Score=28.75 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=5.3
Q ss_pred HHHHHHHHhhhHHH
Q 022288 92 KNDLREEKLSLRSE 105 (299)
Q Consensus 92 kNELRdEns~LksE 105 (299)
..+|..+|..|+..
T Consensus 59 ~~~Le~~n~~L~~~ 72 (155)
T 2oto_A 59 KQALEDQRKDLETK 72 (155)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 208
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=63.36 E-value=22 Score=27.65 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKND 94 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNE 94 (299)
|.+|..--++|..+|..+++++..|.+++..|+.-.++
T Consensus 29 L~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~ 66 (79)
T 2zxx_A 29 LYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEH 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777777777776666443333
No 209
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=63.11 E-value=36 Score=26.68 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLRE 97 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRd 97 (299)
..+..++++.+..|..|..+++.|+.+..+||.
T Consensus 41 i~~eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 41 QNFASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334445555555666666666666555555543
No 210
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=63.08 E-value=31 Score=33.41 Aligned_cols=53 Identities=11% Similarity=0.218 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQE---KNDLREEKLSLRSEIENLNIQYQQR 116 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~E---kNELRdEns~LksE~e~L~~qlqqr 116 (299)
-++|+.+++.|+.+...+..++..++.. ..+|..+...|+.++..|+.++..-
T Consensus 40 ~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 95 (455)
T 2dq0_A 40 WRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEEL 95 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677776666666666665543 4578888889999998888776543
No 211
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=63.05 E-value=52 Score=26.56 Aligned_cols=66 Identities=23% Similarity=0.203 Sum_probs=31.3
Q ss_pred cchHHH-HHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 21 QKADRE-KLRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLR 96 (299)
Q Consensus 21 ~KAerE-RrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELR 96 (299)
.|...| -.||.-|+++.--| ++ ..++ ..+--+..++|-+.|..|+++-=.|+..+..-.-|+++|+
T Consensus 17 ~k~q~ereeKkkiLaER~kpL-~i-----d~l~----~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~ 83 (106)
T 1j1d_B 17 GKRQTEREKKKKILAERRKVL-AI-----DHLN----EDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLR 83 (106)
T ss_dssp ---CCHHHHHHHHHHHHHHHH-HH-----TTCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCCCC-CC-----CCCC----HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHH
Confidence 444444 23455688887666 33 2333 2223345556656666565554444444444444444444
No 212
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=62.97 E-value=28 Score=31.49 Aligned_cols=65 Identities=9% Similarity=0.177 Sum_probs=48.4
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 51 NDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 51 ~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
.+...|..-....++.++++...|+.....+++|++.++....+.|...+.++.+-+++--+.|.
T Consensus 160 asde~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (228)
T 3q0x_A 160 GNDSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLEVQA 224 (228)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeec
Confidence 45566666677778888888888888888888888888888888887777777777766544443
No 213
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=62.74 E-value=20 Score=25.13 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQ 90 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~ 90 (299)
.-+|+|..+..+|++.+.+|+.|..-|++
T Consensus 10 ~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 10 NRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33444444444454444444444444443
No 214
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=62.66 E-value=25 Score=26.87 Aligned_cols=39 Identities=26% Similarity=0.364 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 022288 80 ALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVR 118 (299)
Q Consensus 80 ~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~ 118 (299)
.|....+.+..+...|......+..++.+|+.+|++.+.
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445555666666666666666666677777766666654
No 215
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=62.15 E-value=15 Score=32.45 Aligned_cols=34 Identities=12% Similarity=0.276 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 56 ILADTVQLLKDLTSQVEKLKTEHAALTEESRELT 89 (299)
Q Consensus 56 IL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk 89 (299)
||.-+++-+.+|+++++.|+.+|+.|..|-+.+.
T Consensus 146 lid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l 179 (184)
T 3w03_C 146 LICYCLDTIAENQAKNEHLQKENERLLRDWNDVQ 179 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666666666666666666665555443
No 216
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=62.10 E-value=9 Score=25.78 Aligned_cols=22 Identities=9% Similarity=0.249 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 022288 81 LTEESRELTQEKNDLREEKLSL 102 (299)
Q Consensus 81 L~eE~~eLk~EkNELRdEns~L 102 (299)
|+..+.+|-.++.+|.+|..+|
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHH
Confidence 3333444444444444444333
No 217
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=61.98 E-value=41 Score=25.63 Aligned_cols=61 Identities=11% Similarity=0.231 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHc
Q 022288 59 DTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEK----LSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 59 DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEn----s~LksE~e~L~~qlqqrl~~~ 120 (299)
++..-|++|..+...|+..+..|+..+.+-+.+.+.++.|. ..|..-|..|. +|++-|+..
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~-elrq~LakL 68 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELT-ELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHh
Confidence 46677888888899999888888888888777666665555 45666667774 677777654
No 218
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=61.54 E-value=33 Score=33.93 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELTQE---KNDLREEKLSLRSEIENLNIQYQQR 116 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk~E---kNELRdEns~LksE~e~L~~qlqqr 116 (299)
..++|+.+++.|+.+...+..++..++.. ..+|..|...|+.++..|+.++.+-
T Consensus 41 ~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~ 97 (485)
T 3qne_A 41 EWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEA 97 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777777777766653 3568888999999998888775543
No 219
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=60.99 E-value=14 Score=24.68 Aligned_cols=26 Identities=4% Similarity=0.224 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELT 89 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk 89 (299)
+++|..+|++|-.++..|+.|+.-|+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34555555555555555555554443
No 220
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=60.71 E-value=6.4 Score=28.17 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=6.1
Q ss_pred HHHHHHhhhHHHHHHHH
Q 022288 94 DLREEKLSLRSEIENLN 110 (299)
Q Consensus 94 ELRdEns~LksE~e~L~ 110 (299)
.|..||..|+.++.+|+
T Consensus 38 ~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 38 IVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444443
No 221
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=60.69 E-value=26 Score=27.50 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIE 107 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e 107 (299)
+++..+..|+.+...+..++.....|..+|-+-|..|..||.
T Consensus 41 ~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIa 82 (95)
T 3mov_A 41 NSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEIS 82 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444555555555555555554
No 222
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=60.36 E-value=33 Score=27.54 Aligned_cols=15 Identities=40% Similarity=0.530 Sum_probs=5.8
Q ss_pred HHHHHhhhHHHHHHH
Q 022288 95 LREEKLSLRSEIENL 109 (299)
Q Consensus 95 LRdEns~LksE~e~L 109 (299)
+..|+..|..++..|
T Consensus 66 l~~eKe~L~~ql~~l 80 (94)
T 3jsv_C 66 LVEKKEYLQEQLEQL 80 (94)
T ss_dssp HHHTTSHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHH
Confidence 333333333333333
No 223
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=60.02 E-value=33 Score=29.45 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=8.4
Q ss_pred ChhhhHHHHHHHH
Q 022288 52 DKATILADTVQLL 64 (299)
Q Consensus 52 DKASIL~DAI~yl 64 (299)
+|++.|.|.....
T Consensus 13 n~qs~LeD~L~~~ 25 (154)
T 2ocy_A 13 DKQSHLEEQLNKS 25 (154)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhhccHHHHHHHH
Confidence 6677777765543
No 224
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=59.86 E-value=35 Score=25.83 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEE 84 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE 84 (299)
|..|..+|+.|+.++..|+++
T Consensus 24 le~le~~Ie~LE~~i~~le~~ 44 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQ 44 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333
No 225
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=59.50 E-value=41 Score=27.39 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 67 LTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 67 Lr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlq 114 (299)
|.=+|+-|++.++.+++..-.++.|..|...+...+|..+..|+.++.
T Consensus 28 l~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~ 75 (103)
T 4h22_A 28 FMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFA 75 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444677777777777777777777777777777777777777765553
No 226
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=59.50 E-value=16 Score=24.48 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELT 89 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk 89 (299)
+++|...|++|-.++..|+.|+.-|+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45666666666666666666655554
No 227
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=59.15 E-value=22 Score=32.05 Aligned_cols=39 Identities=31% Similarity=0.457 Sum_probs=24.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 72 EKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 72 q~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
+.|+.+..+.-.+..+|+.-.++|+.|+..|+..+.+|+
T Consensus 33 ~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 33 QQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 344455555556666666666667777777777777765
No 228
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=59.00 E-value=31 Score=27.17 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=17.9
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 76 TEHAALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 76 ~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
++|..|..++..|..|.+.|+.+|..|+.=.+.+
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555544433
No 229
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=58.75 E-value=40 Score=25.72 Aligned_cols=31 Identities=29% Similarity=0.354 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQEKNDLR 96 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~EkNELR 96 (299)
.|...|+.|..+.+.|...++.+..+...++
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555544444444
No 230
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=58.59 E-value=59 Score=30.20 Aligned_cols=17 Identities=35% Similarity=0.378 Sum_probs=8.5
Q ss_pred HhhhHHHHHHHHHHHHH
Q 022288 99 KLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 99 ns~LksE~e~L~~qlqq 115 (299)
...|+.||.+|+.||+.
T Consensus 445 ~~~~~~~~~~~~~~~~~ 461 (471)
T 3mq9_A 445 VEELEGEITTLNHKLQD 461 (471)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555543
No 231
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=58.48 E-value=69 Score=25.58 Aligned_cols=40 Identities=23% Similarity=0.244 Sum_probs=16.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 71 VEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 71 Vq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
++.|+.++..-..++..|+..++.+..++..|...+..|+
T Consensus 56 le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~ 95 (107)
T 2no2_A 56 LESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELE 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444444444444444444
No 232
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=58.33 E-value=23 Score=31.98 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESREL 88 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eL 88 (299)
|.+|+.--++|..+|+.|++++..|.+++.+|
T Consensus 110 L~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eL 141 (209)
T 2wvr_A 110 LYEALKENEKLHKEIEQKDNEIARLKKENKEL 141 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555554444
No 233
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=58.00 E-value=28 Score=24.32 Aligned_cols=18 Identities=28% Similarity=0.558 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 022288 64 LKDLTSQVEKLKTEHAAL 81 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L 81 (299)
+|+|+.-|++|++.|..|
T Consensus 5 vkelknyiqeleernael 22 (46)
T 3he4_B 5 VKELKNYIQELEERNAEL 22 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHH
Confidence 556666666666555443
No 234
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.77 E-value=40 Score=27.23 Aligned_cols=12 Identities=17% Similarity=0.382 Sum_probs=6.5
Q ss_pred HHHHHHHHhhhc
Q 022288 32 RLNEHFTELGNA 43 (299)
Q Consensus 32 KLNErF~eLrsl 43 (299)
+||.....|..+
T Consensus 25 ~In~~vs~l~r~ 36 (130)
T 2dnx_A 25 RISQATAQIKNL 36 (130)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 355555555554
No 235
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=57.57 E-value=7.3 Score=30.38 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=4.5
Q ss_pred HHHHHHHhhhH
Q 022288 93 NDLREEKLSLR 103 (299)
Q Consensus 93 NELRdEns~Lk 103 (299)
++|..||+.||
T Consensus 32 ~qLE~EN~~Lk 42 (78)
T 1dip_A 32 SQLERENTLLK 42 (78)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 236
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=57.56 E-value=47 Score=25.10 Aligned_cols=47 Identities=13% Similarity=0.062 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 67 LTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 67 Lr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
|..+.+.+...+..|+.++..++.+......|-..|.+=|..|+.++
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EI 49 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEI 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666777777777766665556666666666666554
No 237
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=57.49 E-value=8.9 Score=34.57 Aligned_cols=65 Identities=12% Similarity=0.113 Sum_probs=24.4
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHHHHHHcCCCc
Q 022288 52 DKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIE---NLNIQYQQRVRAMVPWA 124 (299)
Q Consensus 52 DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e---~L~~qlqqrl~~~~pw~ 124 (299)
++..+..+.+.-..++.++++.|.+++..++.+++.|+.+ .....+++. +...||-..+... -|.
T Consensus 138 ~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e-------~~e~~te~~p~~k~~~qly~~vt~i-~w~ 205 (250)
T 2ve7_C 138 ACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKE-------VDEDTTVTIPSAVYVAQLYHQVSKI-EWE 205 (250)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC--------------------CTTTHHHHHHHHHHHCC-EEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhhhhhhHHHHHHHHHHHHHhhc-eee
Confidence 4444555444444444444444444444443333333333 333333332 3333444555555 565
No 238
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=57.42 E-value=57 Score=25.26 Aligned_cols=15 Identities=20% Similarity=0.457 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHhhh
Q 022288 67 LTSQVEKLKTEHAAL 81 (299)
Q Consensus 67 Lr~qVq~Lk~en~~L 81 (299)
|++.+..-.+++++|
T Consensus 16 l~E~~~q~qaEl~sL 30 (78)
T 3iv1_A 16 MKEEMDRAQAELNAL 30 (78)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHH
Confidence 333344344444333
No 239
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=57.30 E-value=90 Score=27.34 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=25.4
Q ss_pred HHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 022288 35 EHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHA 79 (299)
Q Consensus 35 ErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~ 79 (299)
+.+..||..|+-|. ..||.-+ .-.||+=|+++...|+...+
T Consensus 55 ~k~~qlre~~d~gt-t~~~i~~---m~~yI~llrErea~lEqkVa 95 (169)
T 3k29_A 55 QKIRQLREQLDDGT-TSDAILK---MKAYIKVVAIQLSEEEEKVN 95 (169)
T ss_dssp HHHHHHHHHHHHCC-CHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CcHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 45788888875554 3344333 33566668877777776554
No 240
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=57.18 E-value=33 Score=26.26 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 89 TQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 89 k~EkNELRdEns~LksE~e~L~~qlq 114 (299)
+.+..+|+.+...|+.++..|+.+|.
T Consensus 77 ~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 77 KNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444433
No 241
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=57.18 E-value=21 Score=27.38 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 86 RELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 86 ~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
.+++.+..+|+.+...+++++..|+
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~ 37 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLK 37 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444455555444
No 242
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=57.08 E-value=33 Score=32.66 Aligned_cols=75 Identities=12% Similarity=0.252 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhhcc-CCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 022288 31 DRLNEHFTELGNAL-DPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEI 106 (299)
Q Consensus 31 dKLNErF~eLrslL-vP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~ 106 (299)
..|++.|..|..+- .|.. ..-+..+|..|-.+...+..--..|+.....+..++...-.+.|.|-.+...|-.+|
T Consensus 44 ~~l~~ff~alq~la~~P~~-~~~R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI 119 (463)
T 2d4y_A 44 GSLQSFFTSLQTLVSNAED-PAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQI 119 (463)
T ss_dssp HHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777652 2322 344666777776666555555555554444444444444444444444444444443
No 243
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=57.05 E-value=6.9 Score=27.38 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEES 85 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~ 85 (299)
.||.+|+.+++.|+..+..|...+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888887777665543
No 244
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=57.03 E-value=7.8 Score=24.75 Aligned_cols=20 Identities=40% Similarity=0.375 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhhhHHHH
Q 022288 66 DLTSQVEKLKTEHAALTEES 85 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~ 85 (299)
+|+....+|+.++..|+-|+
T Consensus 4 rlkqknarlkqeiaaleyei 23 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEI 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 33334444444444444433
No 245
>1w8x_M Protein P30, protein P, GPP; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=56.20 E-value=21 Score=27.46 Aligned_cols=44 Identities=30% Similarity=0.772 Sum_probs=28.1
Q ss_pred CCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCcCCC--CCCCCccCCCC
Q 022288 135 PSYPYPVPMPMPPGAIPMHPPMQPYPMFGNQNPGVIPN--PCSTFVPYMAP 183 (299)
Q Consensus 135 p~y~~p~pv~~P~~~ip~Hp~~q~yp~f~~q~~~~~~~--p~~~~~py~~p 183 (299)
|.|||-.|||+|..+ | -.+.|.+.+.--|-|.. -.--||||..-
T Consensus 5 pqfpyagpvpipgpa-p----tetmpllnyrvegriagiqqarqfmpflqg 50 (83)
T 1w8x_M 5 PQFPYAGPVPIPGPA-P----TETMPLLNYRVEGRIAGIQQARQFMPFLQG 50 (83)
T ss_dssp SSSCCCSSCCTTCCC-C----CCCCCCCCCCCCCBCCCCCCSCCCCSCCSC
T ss_pred CCCCcCCCCCCCCCC-C----ccccccccceeechhhhHHHHHHhhhhhcC
Confidence 679998888887433 2 24556666666665543 34578997653
No 246
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=56.18 E-value=54 Score=24.94 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 89 TQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 89 k~EkNELRdEns~LksE~e~L~~qlq 114 (299)
.....+|..+...++.++.+...+||
T Consensus 34 q~~i~~lE~el~~~r~e~~~ql~EYq 59 (86)
T 1x8y_A 34 RRLLAEKEREMAEMRARMQQQLDEYQ 59 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444443
No 247
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=56.10 E-value=25 Score=25.65 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=22.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022288 78 HAALTEESRELTQEKNDLREEKLSLRSEIENLNIQ 112 (299)
Q Consensus 78 n~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~q 112 (299)
.++|-..+..|+.|-..||.|..--..++.+||.+
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~e 39 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETE 39 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhh
Confidence 34555666666777666666666666666666654
No 248
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=56.03 E-value=20 Score=27.26 Aligned_cols=47 Identities=13% Similarity=0.027 Sum_probs=24.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 022288 72 EKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVR 118 (299)
Q Consensus 72 q~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~ 118 (299)
..|++.+..|+..+-....-..+|-+.......+|++|+.|++.-..
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~ 56 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 56 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555544443333
No 249
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=55.68 E-value=32 Score=30.23 Aligned_cols=15 Identities=20% Similarity=0.149 Sum_probs=6.3
Q ss_pred HHHHHHHHhhhHHHH
Q 022288 71 VEKLKTEHAALTEES 85 (299)
Q Consensus 71 Vq~Lk~en~~L~eE~ 85 (299)
|++|+.+++.|++++
T Consensus 137 V~kLqkeiD~LEDeL 151 (175)
T 3mud_A 137 TAKNEKSIDDLEEKV 151 (175)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 250
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=55.66 E-value=42 Score=24.03 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHH
Q 022288 67 LTSQVEKLKTEHAALTEESREL 88 (299)
Q Consensus 67 Lr~qVq~Lk~en~~L~eE~~eL 88 (299)
|-.+|..|+.....++.|+.-|
T Consensus 16 L~~kv~~Le~~c~~~eQEieRL 37 (48)
T 3vmx_A 16 LATKIQHLEFSCSEKEQEIERL 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHH
Confidence 3444555555554444444444
No 251
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=55.56 E-value=13 Score=28.07 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=22.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 76 TEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 76 ~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
+.+..-.+.+++|..+.++-.+|+..|+.++++++
T Consensus 18 ~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 18 KILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455566666666666777777777777665
No 252
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=55.27 E-value=1.2e+02 Score=29.90 Aligned_cols=27 Identities=22% Similarity=0.159 Sum_probs=15.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 93 NDLREEKLSLRSEIENLNIQYQQRVRA 119 (299)
Q Consensus 93 NELRdEns~LksE~e~L~~qlqqrl~~ 119 (299)
..|+.....|+..|.+|+..+.++...
T Consensus 171 ~~L~~~~~~l~~ki~~l~~~~~~~~~~ 197 (464)
T 1m1j_B 171 RVLRAVIDSLHKKIQKLENAIATQTDY 197 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555666666777666655544
No 253
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=55.24 E-value=14 Score=24.87 Aligned_cols=14 Identities=14% Similarity=0.283 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 022288 65 KDLTSQVEKLKTEH 78 (299)
Q Consensus 65 KdLr~qVq~Lk~en 78 (299)
++|..+|++|-.+|
T Consensus 4 ~QLEdKVEeLl~~n 17 (34)
T 1uo4_A 4 KQIEDKGEEILSKL 17 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhh
Confidence 34444444443333
No 254
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=54.94 E-value=14 Score=24.84 Aligned_cols=24 Identities=8% Similarity=0.284 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhH
Q 022288 80 ALTEESRELTQEKNDLREEKLSLR 103 (299)
Q Consensus 80 ~L~eE~~eLk~EkNELRdEns~Lk 103 (299)
+|+.++.+|-.++.+|.+|..+|+
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455555555555555554444444
No 255
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=54.92 E-value=70 Score=25.07 Aligned_cols=45 Identities=24% Similarity=0.274 Sum_probs=23.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 72 EKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQR 116 (299)
Q Consensus 72 q~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqr 116 (299)
+.|-.++..|.-.+.+|..|+....-....-|.|+..|+.||..+
T Consensus 22 E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~k 66 (81)
T 3qh9_A 22 EELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALK 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 344444444555555555555554444445556666666665544
No 256
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=54.79 E-value=49 Score=29.84 Aligned_cols=52 Identities=13% Similarity=0.122 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHH
Q 022288 60 TVQLLKDLTSQVEKLKTEHAALTEESRELTQE-KNDLREEKLSLRSEIENLNI 111 (299)
Q Consensus 60 AI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~E-kNELRdEns~LksE~e~L~~ 111 (299)
.-+.+.+|+.++++|+.++..+..++..+..+ ...|..=...|..++.+.+.
T Consensus 224 p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~ 276 (357)
T 3rrk_A 224 LGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVARYKA 276 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888888888888888777 55566666666666665554
No 257
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=54.73 E-value=23 Score=24.61 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 60 TVQLLKDLTSQVEKLKTEHAALTEESRELTQEK 92 (299)
Q Consensus 60 AI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~Ek 92 (299)
..+.+.+|..+-+.|++.+..|+.+.+.|....
T Consensus 7 mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 7 MYDMISDLNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888877777777765543
No 258
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Probab=54.69 E-value=20 Score=32.50 Aligned_cols=14 Identities=50% Similarity=1.037 Sum_probs=9.9
Q ss_pred HHHHHHHHcCCCcc
Q 022288 112 QYQQRVRAMVPWAA 125 (299)
Q Consensus 112 qlqqrl~~~~pw~~ 125 (299)
+.-.+|+.|.||..
T Consensus 315 ~~g~~~r~~~~~~~ 328 (338)
T 1np3_A 315 QIGEKLRAMMPWIA 328 (338)
T ss_dssp HHHHHHHTTCTTC-
T ss_pred HHHHHHHHhCcccc
Confidence 33477899999964
No 259
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=54.62 E-value=49 Score=31.62 Aligned_cols=55 Identities=20% Similarity=0.299 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--------HHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 61 VQLLKDLTSQVEKLKTEHAALTEESRELTQE--------KNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 61 I~ylKdLr~qVq~Lk~en~~L~eE~~eLk~E--------kNELRdEns~LksE~e~L~~qlqq 115 (299)
++.|.+|-++-.++..+.+.|+.+.+.+..+ ..+|+.+...|+.++..|+.++.+
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 89 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALRE 89 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888888888888755 346778888888888888776544
No 260
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=54.49 E-value=0.57 Score=38.25 Aligned_cols=57 Identities=26% Similarity=0.443 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHH--------HH--HHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 58 ADTVQLLKDLTSQVEK--------LK--TEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 58 ~DAI~ylKdLr~qVq~--------Lk--~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlq 114 (299)
.+-|..||+.+.+..- .+ ++...|+.++..|..++..|..|+..|+.|++.|..+|+
T Consensus 30 ~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e 96 (107)
T 3a5t_A 30 KEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYE 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC-
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666554321 00 233445555555566666666666667766666654433
No 261
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=54.34 E-value=15 Score=24.72 Aligned_cols=26 Identities=8% Similarity=0.180 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELT 89 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk 89 (299)
+++|..+|++|-.++..|+.|+.-|+
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 44555555555555555555554443
No 262
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=53.99 E-value=22 Score=23.35 Aligned_cols=23 Identities=39% Similarity=0.403 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHH
Q 022288 67 LTSQVEKLKTEHAALTEESRELT 89 (299)
Q Consensus 67 Lr~qVq~Lk~en~~L~eE~~eLk 89 (299)
|+.++..|+.++..|.-|+..|+
T Consensus 7 lkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 263
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=53.61 E-value=62 Score=27.09 Aligned_cols=52 Identities=12% Similarity=0.164 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 022288 67 LTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVR 118 (299)
Q Consensus 67 Lr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~ 118 (299)
|-+++..++.++..|....+.+..|..|+.+-...--....+|=+++|+...
T Consensus 48 Ll~~LsaIk~ry~~L~~q~~~iaaeQke~~d~ir~tL~~tm~miQ~LQ~~td 99 (123)
T 4aj5_K 48 LLKELSVIKSRYQTLYARFKPVAVEQKESKSRICATVKKTMNMIQKLQKQTD 99 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445566777788888888888888888888776555555556556666554
No 264
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=53.51 E-value=22 Score=26.84 Aligned_cols=32 Identities=6% Similarity=0.259 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 82 TEESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 82 ~eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
....+.+..+...|......+..++.+|+.+|
T Consensus 71 ~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 71 QEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444333
No 265
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=53.43 E-value=41 Score=26.04 Aligned_cols=61 Identities=20% Similarity=0.285 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHc
Q 022288 59 DTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEK----LSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 59 DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEn----s~LksE~e~L~~qlqqrl~~~ 120 (299)
++..-|++|..+...|+..+..|+..+.+-+.+.+.++.|. ..|..-|..|. +|++-|+..
T Consensus 10 ~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~-elRqgLakL 74 (79)
T 3cvf_A 10 ETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELS-ELREGLARL 74 (79)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHh
Confidence 34567888888888888888888888887777666666555 45555666664 666666553
No 266
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=53.37 E-value=23 Score=28.88 Aligned_cols=46 Identities=4% Similarity=0.211 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQ 112 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~q 112 (299)
+.+|++++++ +++.|+. .++.|.....++++....+...+..|+.+
T Consensus 96 ~~eA~~~l~~---ri~~l~~-------~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 96 IDEAISFLEK---RLKEYDE-------AIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp HHHHHHHHHH---HHHHHHH-------HHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHH---HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667666543 4444444 34444444444455555555555555533
No 267
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=53.27 E-value=16 Score=24.62 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHh
Q 022288 65 KDLTSQVEKLKTEHA 79 (299)
Q Consensus 65 KdLr~qVq~Lk~en~ 79 (299)
++|...|++|-.++.
T Consensus 4 nQLEdkVEeLl~~~~ 18 (34)
T 2hy6_A 4 KQLADAVEELASANY 18 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhH
Confidence 444444444443333
No 268
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=53.19 E-value=65 Score=25.91 Aligned_cols=34 Identities=29% Similarity=0.377 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhH
Q 022288 70 QVEKLKTEHAALTEESRELTQEKNDLREEKLSLR 103 (299)
Q Consensus 70 qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~Lk 103 (299)
+++.|+.++..|....++...-..+|..++..|.
T Consensus 19 e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq 52 (125)
T 1joc_A 19 EIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQ 52 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 3444444444444444444443444544444443
No 269
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=53.11 E-value=36 Score=32.79 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhhhcc-CCC
Q 022288 25 REKLRRDRLNEHFTELGNAL-DPD 47 (299)
Q Consensus 25 rERrRRdKLNErF~eLrslL-vP~ 47 (299)
+...+-+.+.++|.+|...| .|+
T Consensus 22 ~~~~~l~~~~~r~~el~~~~~~p~ 45 (365)
T 1gqe_A 22 RGYLDYDAKKERLEEVNAELEQPD 45 (365)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHSGG
T ss_pred HHhcCHHHHHHHHHHHHHHhcCCc
Confidence 44455667777888877643 443
No 270
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=53.03 E-value=6.9 Score=36.86 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 69 SQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 69 ~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
++|.+|+..+..++++++.|+....+++.+...|+..+..|+
T Consensus 4 ~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~ 45 (319)
T 1fzc_C 4 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLE 45 (319)
T ss_dssp ------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555666666666655555555555555555554
No 271
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=52.96 E-value=1.1e+02 Score=27.62 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhhhccCCCC
Q 022288 30 RDRLNEHFTELGNALDPDR 48 (299)
Q Consensus 30 RdKLNErF~eLrslLvP~~ 48 (299)
|++|.++..+|+..|.|-.
T Consensus 127 r~k~~~~leeLr~~l~P~a 145 (273)
T 3s84_A 127 KVKIDQTVEELRRSLAPYA 145 (273)
T ss_dssp HHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHhhhHH
Confidence 4577888888887777755
No 272
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=52.49 E-value=42 Score=26.39 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQE 91 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~E 91 (299)
.|+.+++.|+++...|..++..++.+
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~ 30 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAK 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666655555543
No 273
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=52.32 E-value=44 Score=40.23 Aligned_cols=56 Identities=13% Similarity=0.169 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 55 TILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 55 SIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
.=|..|-+-+...+++++++++++..|++++..|+.+.+++..|+..|+.+++..+
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~ 2069 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVK 2069 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555556666666666666666666666666655444
No 274
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=52.22 E-value=17 Score=24.41 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhH
Q 022288 79 AALTEESRELTQEKNDLREEKLSLR 103 (299)
Q Consensus 79 ~~L~eE~~eLk~EkNELRdEns~Lk 103 (299)
.+|+..+.+|-.++.+|.+|-.+|+
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3455666666666655555555554
No 275
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=52.20 E-value=52 Score=27.80 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=7.9
Q ss_pred HHhhhHHHHHHHHHHH
Q 022288 98 EKLSLRSEIENLNIQY 113 (299)
Q Consensus 98 Ens~LksE~e~L~~ql 113 (299)
++..+..|++.|-..|
T Consensus 68 ~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 68 EADKLNKEVEDLTASL 83 (135)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555554444
No 276
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=52.19 E-value=9.1 Score=34.32 Aligned_cols=32 Identities=31% Similarity=0.323 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 58 ADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKN 93 (299)
Q Consensus 58 ~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkN 93 (299)
.+.+.++.++. .|.++|+.|.+|+.+|+.+..
T Consensus 12 ~~~~~~~~~~~----~l~~eN~~Lk~e~~~l~~~~~ 43 (255)
T 2j5u_A 12 SGAVDGVVDLK----NTYTENQHLKERLEELAQLES 43 (255)
T ss_dssp ------------------CTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433 355666666666666655443
No 277
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=52.19 E-value=50 Score=26.06 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRE 87 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~e 87 (299)
+.+|++++++ +++.|+...+.|...+..
T Consensus 86 ~~eA~~~l~~---r~~~l~~~~~~l~~~l~~ 113 (133)
T 1fxk_C 86 FEDAMESIKS---QKNELESTLQKMGENLRA 113 (133)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4566665443 444444444433333333
No 278
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=52.00 E-value=57 Score=30.32 Aligned_cols=25 Identities=12% Similarity=0.310 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 91 EKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 91 EkNELRdEns~LksE~e~L~~qlqq 115 (299)
...||..|...|..++++++.|++.
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666543
No 279
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=51.66 E-value=68 Score=27.86 Aligned_cols=54 Identities=19% Similarity=0.331 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH---HHHHHHHHHc
Q 022288 67 LTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN---IQYQQRVRAM 120 (299)
Q Consensus 67 Lr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~---~qlqqrl~~~ 120 (299)
|+.++..|.+....|.++++....+.-+|..+.+.||-++-.|. .++..+|..+
T Consensus 101 LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~~~ 157 (170)
T 3l4q_C 101 LKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQK 157 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHc
Confidence 33344444444444444444444444444444444444444332 3344555444
No 280
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=51.61 E-value=91 Score=24.92 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHH---HHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 81 LTEESRELTQEKNDL---REEKLSLRSEIENLNIQYQQRVRA 119 (299)
Q Consensus 81 L~eE~~eLk~EkNEL---RdEns~LksE~e~L~~qlqqrl~~ 119 (299)
|.+|++.|..|.+.| ..+-..|++.-..|+.+|..+-..
T Consensus 52 L~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~~ 93 (96)
T 1t3j_A 52 LEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSKQ 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344444454444443 333446777777777777766554
No 281
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=51.51 E-value=38 Score=29.49 Aligned_cols=37 Identities=11% Similarity=0.146 Sum_probs=17.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 73 KLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 73 ~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
.|......|..+...|..++++|..+...|+.++.++
T Consensus 53 ~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~ 89 (174)
T 2p22_A 53 IIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKV 89 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555555555555544444
No 282
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=51.03 E-value=80 Score=24.08 Aligned_cols=7 Identities=57% Similarity=0.847 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 022288 88 LTQEKND 94 (299)
Q Consensus 88 Lk~EkNE 94 (299)
|..|+|+
T Consensus 47 l~~ek~~ 53 (89)
T 3bas_A 47 LLEQKND 53 (89)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 283
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=50.49 E-value=1.2e+02 Score=25.86 Aligned_cols=29 Identities=14% Similarity=0.100 Sum_probs=13.7
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 022288 52 DKATILADTVQLLKDLTSQVEKLKTEHAA 80 (299)
Q Consensus 52 DKASIL~DAI~ylKdLr~qVq~Lk~en~~ 80 (299)
-|.-++.+--.-+..|..+.+.|+-+...
T Consensus 26 ~Ke~l~~~l~~~i~q~d~elqQLefq~kr 54 (150)
T 4dci_A 26 WKEEAEREISNGIANADQQLAQLEQEGQT 54 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555444433
No 284
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=50.39 E-value=82 Score=24.05 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHH
Q 022288 30 RDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTS 69 (299)
Q Consensus 30 RdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~ 69 (299)
-..||+++.+|+.- -+.. ..+|..||+ |+.+-.+|..
T Consensus 32 A~~vd~~~~~i~~~-~~~~-~~~r~~vma-ALnladel~~ 68 (104)
T 1t3u_A 32 ARYLDGKMREIRSS-GKVI-GADRVAVMA-ALNITHDLLH 68 (104)
T ss_dssp HHHHHHHHHHHHTT-TCSC-SHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-cCCC-CHHHHHHHH-HHHHHHHHHH
Confidence 46799999999986 3433 335555543 4544444443
No 285
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=50.04 E-value=17 Score=25.90 Aligned_cols=16 Identities=13% Similarity=0.227 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEH 78 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en 78 (299)
+|-++....+.|..+|
T Consensus 28 FLd~v~~~~~~l~~e~ 43 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKK 43 (57)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 286
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=49.17 E-value=14 Score=29.02 Aligned_cols=56 Identities=11% Similarity=0.357 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 58 ADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQR 116 (299)
Q Consensus 58 ~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqr 116 (299)
.+-...+.+|++.++.|.+.+...+.. -..|...-+.-...|+.+++.|+.++..|
T Consensus 39 ~El~~~l~el~e~l~DL~~SI~i~e~~---~~~EI~~Rk~~v~~l~~~i~~lk~~~~~~ 94 (95)
T 2c5k_T 39 EEIQDILKDVEETIVDLDRSIIVMKRD---ENEDVSGREAQVKNIKQQLDALKLRFDRR 94 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS---TTCCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444455555555555444431111 11122222333356666677776665543
No 287
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=48.92 E-value=78 Score=25.90 Aligned_cols=28 Identities=14% Similarity=0.234 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELT 89 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk 89 (299)
.-++.|+.+...|++++..+..+-.+|.
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le 33 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELE 33 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554444444444433
No 288
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=48.39 E-value=63 Score=25.46 Aligned_cols=45 Identities=16% Similarity=0.349 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
+.+.+.++-|+...+.|...++.|......+++....+..++..+
T Consensus 84 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 84 KNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666555555555555555444444
No 289
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=48.09 E-value=95 Score=24.49 Aligned_cols=14 Identities=29% Similarity=0.548 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhhh
Q 022288 29 RRDRLNEHFTELGN 42 (299)
Q Consensus 29 RRdKLNErF~eLrs 42 (299)
||.+|...+.+|..
T Consensus 16 RkkkL~~Ki~el~~ 29 (98)
T 2ke4_A 16 QRKRLQQQLEERSR 29 (98)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44456666666554
No 290
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=48.02 E-value=39 Score=32.27 Aligned_cols=56 Identities=20% Similarity=0.341 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH----------HHHHHHhhhHHHHHHHHHHHHH
Q 022288 60 TVQLLKDLTSQVEKLKTEHAALTEESRELTQEKN----------DLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 60 AI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkN----------ELRdEns~LksE~e~L~~qlqq 115 (299)
.++.|.+|-++-.++..+.+.|+.+.+.+..+.. +|+.+...|+.++..|+.++.+
T Consensus 28 ~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 93 (425)
T 2dq3_A 28 LVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRK 93 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777888888888888888877643 4456666777777777766544
No 291
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=47.96 E-value=73 Score=23.88 Aligned_cols=39 Identities=26% Similarity=0.347 Sum_probs=27.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022288 74 LKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQ 112 (299)
Q Consensus 74 Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~q 112 (299)
++.-..+-+..+..|-.-.|.|.+|...|...+.+|+.+
T Consensus 18 vK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 18 LKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhh
Confidence 444455566677777777777888888888887777654
No 292
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=47.53 E-value=19 Score=28.03 Aligned_cols=29 Identities=28% Similarity=0.295 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 81 LTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 81 L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
..+|++.|+..+.||.+.+..|+.|-.-|
T Consensus 13 VREEVevLKe~I~EL~e~~~qLE~EN~~L 41 (78)
T 1dip_A 13 VREEVEILKEQIRELVEKNSQLERENTLL 41 (78)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666777777777776665544
No 293
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=47.51 E-value=1.1e+02 Score=24.81 Aligned_cols=26 Identities=15% Similarity=0.136 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQE 91 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~E 91 (299)
+.+.++++|..++..|...++.|..|
T Consensus 15 ~~~~ei~~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 15 KSQETIGSLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444
No 294
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=47.33 E-value=38 Score=26.47 Aligned_cols=22 Identities=14% Similarity=0.296 Sum_probs=12.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHH
Q 022288 92 KNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 92 kNELRdEns~LksE~e~L~~ql 113 (299)
+..+.......|+++.+|+.+|
T Consensus 80 R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 80 RNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 4445555556666666666554
No 295
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=47.11 E-value=64 Score=22.70 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 81 LTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 81 L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
+++.++.|..-.+-|+..-++|-+|-+.-+..+.||+..+
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~l 42 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQL 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777778788888888888888888888653
No 296
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=46.75 E-value=20 Score=29.23 Aligned_cols=23 Identities=9% Similarity=0.120 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEE 84 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE 84 (299)
.-|..|.+++.+|+.+++.|..+
T Consensus 32 ~~v~~l~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 32 KTVERFFEEWKDQRKEIERLKSV 54 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 297
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=46.71 E-value=76 Score=22.60 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=21.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 73 KLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 73 ~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
-|...+..|..+.-.|...-..|..-..-|+.||.+|+++.
T Consensus 7 ylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 34445555555444444444444444556667777776553
No 298
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=46.42 E-value=16 Score=28.98 Aligned_cols=26 Identities=19% Similarity=0.403 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 85 SRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 85 ~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
.+.|+.+.++|+.+...|+.++++|+
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666677777777777777665
No 299
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=46.31 E-value=1.3e+02 Score=25.17 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 022288 26 EKLRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEES 85 (299)
Q Consensus 26 ERrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~ 85 (299)
|..|+..-..++.+=|-- +++...++ ..+--+..++|-+.|..|+++-=.|+..+
T Consensus 34 E~e~k~eeKkkiLaER~~-pL~id~ls----~~~L~e~~keLh~~I~~LEeEKYDlE~kv 88 (133)
T 1j1d_C 34 EAEERRGEKGRALSTRAQ-PLELAGLG----FAELQDLARQLHARVDKVDEERYDIEAKV 88 (133)
T ss_dssp HHHHHHHHHHHHHHHHTC-CCCCTTCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-CCCCCCCC----HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 444444444555555532 33444444 33334555666666666665543344333
No 300
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=45.50 E-value=1e+02 Score=23.86 Aligned_cols=47 Identities=21% Similarity=0.140 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
.++-|++++..-+.++..|++.+.--.....-|-||.-.|--|-.=|
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL 65 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVL 65 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHH
Confidence 45556666665555666666555444444444555555554443333
No 301
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=45.44 E-value=1.2e+02 Score=24.35 Aligned_cols=16 Identities=31% Similarity=0.208 Sum_probs=7.2
Q ss_pred hhhHHHHHHHHHHHHH
Q 022288 100 LSLRSEIENLNIQYQQ 115 (299)
Q Consensus 100 s~LksE~e~L~~qlqq 115 (299)
..+..+++.|+.++..
T Consensus 64 Ekl~~eKe~L~~ql~~ 79 (94)
T 3jsv_C 64 EKLVEKKEYLQEQLEQ 79 (94)
T ss_dssp HHHHHTTSHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHH
Confidence 3444444444444433
No 302
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=45.42 E-value=73 Score=25.04 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 83 EESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 83 eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
++++.-..++.+|.++..+.+..|.+|
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333344444444444444333
No 303
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=44.76 E-value=1.2e+02 Score=25.85 Aligned_cols=17 Identities=18% Similarity=0.378 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEH 78 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en 78 (299)
+-|..|+..|.+|+.++
T Consensus 98 Rsv~kLEk~id~lEd~L 114 (155)
T 2efr_A 98 RSVTKLEKSIDDLEDEL 114 (155)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 304
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=44.72 E-value=49 Score=24.49 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHH
Q 022288 67 LTSQVEKLKTEHAALTEESREL 88 (299)
Q Consensus 67 Lr~qVq~Lk~en~~L~eE~~eL 88 (299)
|-.+|+.|+..+..-+.|+.-|
T Consensus 23 L~~kv~~Le~~c~e~eQEieRL 44 (58)
T 3a2a_A 23 LAAKIQHLEFSCSEKEQEIERL 44 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555445554444
No 305
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=44.48 E-value=51 Score=28.72 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=21.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022288 76 TEHAALTEESRELTQEKNDLREEKLSLRSEIENLNI 111 (299)
Q Consensus 76 ~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ 111 (299)
...+.|......|+.++..|..+...|..+++.|+.
T Consensus 49 ~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 49 RFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555666666666666666666666665
No 306
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=44.37 E-value=1 Score=36.71 Aligned_cols=41 Identities=34% Similarity=0.455 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 70 QVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 70 qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
++..|+.++..|..+...|..|...|+.|...|+...+.|.
T Consensus 59 ~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e~L~ 99 (107)
T 3a5t_A 59 QKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQ 99 (107)
T ss_dssp HHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666667777777777777777777777777666665
No 307
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=44.16 E-value=32 Score=23.12 Aligned_cols=19 Identities=11% Similarity=0.071 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 022288 83 EESRELTQEKNDLREEKLS 101 (299)
Q Consensus 83 eE~~eLk~EkNELRdEns~ 101 (299)
..+++|-.++.+|.+|..+
T Consensus 8 dKvEel~~~~~~l~nEv~R 26 (34)
T 2r2v_A 8 DKLEEVASKLYHNANELAR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHH
Confidence 3333333444444433333
No 308
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=43.98 E-value=50 Score=29.45 Aligned_cols=30 Identities=10% Similarity=0.214 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQEKNDL 95 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~EkNEL 95 (299)
.|..+++.|+.++..|......+.+|..++
T Consensus 63 ~l~~~l~~l~~e~~el~d~~lR~~AEfeN~ 92 (213)
T 4ani_A 63 AAKAQIAELEAKLSEMEHRYLRLYADFENF 92 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333333443333
No 309
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=43.56 E-value=1.7e+02 Score=25.71 Aligned_cols=66 Identities=23% Similarity=0.206 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHHHH
Q 022288 26 EKLRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALT-------EESRELTQEKNDLR 96 (299)
Q Consensus 26 ERrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~-------eE~~eLk~EkNELR 96 (299)
|..|+..-..++.+=|-- +++...++- .+--++.++|-..|..|+++-=.|+ .||.+|+...|+|+
T Consensus 34 E~e~k~eEKkkiLaER~k-PLnid~Lse----~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLr 106 (180)
T 1j1e_C 34 EAEERRGEKGRALSTRAQ-PLELAGLGF----AELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (180)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCCGGGCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCC-CCCCCCCCH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHH
Confidence 444444444555555532 334444442 3334555666666666665533333 34555555555553
No 310
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=43.53 E-value=1.1e+02 Score=26.59 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=50.3
Q ss_pred ChhhhHH---HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 52 DKATILA---DTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 52 DKASIL~---DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
.+.+|+. .-...|+.|...-++|.+.+....++..+|..+.|.|+-|...|...+++.-.-|.+
T Consensus 90 E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~~ 156 (170)
T 3l4q_C 90 EMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQ 156 (170)
T ss_dssp STTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 4444443 234566777788889999999999999999999999999999999999876655544
No 311
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=43.40 E-value=1.1e+02 Score=23.36 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 80 ALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 80 ~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
.|.++...|.....+..+....|...+-.|+
T Consensus 46 ~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE 76 (89)
T 3bas_A 46 TLLEQKNDLFGSMKQLEDKVEELLSKNYHLE 76 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3333333333333333333334433333333
No 312
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=43.09 E-value=24 Score=23.69 Aligned_cols=25 Identities=12% Similarity=0.347 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESREL 88 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eL 88 (299)
+++|..+|++|-.++..|+.|+.-|
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHH
Confidence 3555555555555555555554444
No 313
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=42.60 E-value=42 Score=22.56 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESREL 88 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eL 88 (299)
+++|...|++|-.++..|+.|+.-|
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl 27 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARV 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4556666666655555555555444
No 314
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=42.56 E-value=67 Score=24.12 Aligned_cols=22 Identities=9% Similarity=0.033 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 022288 60 TVQLLKDLTSQVEKLKTEHAAL 81 (299)
Q Consensus 60 AI~ylKdLr~qVq~Lk~en~~L 81 (299)
..+-.++|+.++.+|+.++..+
T Consensus 4 ~~~~~~~l~~E~~~lk~E~~st 25 (65)
T 3sja_C 4 LSKKYLAKVKERHELKEFNNSI 25 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHHHhcc
Confidence 3455667777777777666544
No 315
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=42.37 E-value=44 Score=21.98 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELT 89 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk 89 (299)
.+|..+|...+.+|-.|+.|+..|.
T Consensus 4 aqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3455555555555555544444443
No 316
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.08 E-value=23 Score=34.07 Aligned_cols=40 Identities=20% Similarity=0.347 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 70 QVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 70 qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
++++++.....+.+.++.|..++++|..+...++.|+..|
T Consensus 26 ~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l 65 (405)
T 4b4t_J 26 KIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLL 65 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555666666666665555555555444
No 317
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=42.05 E-value=28 Score=27.74 Aligned_cols=41 Identities=15% Similarity=0.147 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 022288 59 DTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEK 99 (299)
Q Consensus 59 DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEn 99 (299)
++..-|.+||.+|..+..++-.|-.+--.+..+.-+++.++
T Consensus 9 ~~~~~L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K~~~ 49 (114)
T 3rmi_A 9 KILSELAYLRQSIDNFDITLIHILAERFRCTQAIGRLKARY 49 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 34556889999999999888888887777777777776654
No 318
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=41.90 E-value=51 Score=26.28 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREE 98 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdE 98 (299)
.+..|+.+++.|..+-..|.+.++.+++...+|.++
T Consensus 7 ~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted 42 (106)
T 2aze_B 7 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSED 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456777777777777777777777777776666544
No 319
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=41.87 E-value=60 Score=24.98 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 81 LTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 81 L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
|++.++.|..-.+-|+-.-++|-+|-+.-|..|+||+..+
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~L 44 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKV 44 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666677777777777777777777777553
No 320
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=41.86 E-value=91 Score=25.11 Aligned_cols=62 Identities=26% Similarity=0.319 Sum_probs=43.1
Q ss_pred hhhhHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 53 KATILADTVQLLKDLTS-QVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 53 KASIL~DAI~ylKdLr~-qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqq 115 (299)
|--||++-+.-+ ++-. -.++|++....|-+.+..|..|+-+|......-.-||..|..++.+
T Consensus 26 KkkiLaER~kpL-~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~d 88 (106)
T 1j1d_B 26 KKKILAERRKVL-AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRIND 88 (106)
T ss_dssp HHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHH
Confidence 566777766444 2222 2456777777778888888888888888888888888888744433
No 321
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=41.60 E-value=95 Score=30.68 Aligned_cols=53 Identities=13% Similarity=0.077 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHH---------------------------HHHHH----HHH-HhhhHHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELTQ---------------------------EKNDL----REE-KLSLRSEIENLN 110 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk~---------------------------EkNEL----RdE-ns~LksE~e~L~ 110 (299)
.-+.|+.+++.|+.+...+..++..++. +..+| ..| ...|+.++..|+
T Consensus 45 ~~r~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~i~~le 124 (484)
T 3lss_A 45 KWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLA 124 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----------------------------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666566655555444 23456 666 778888888887
Q ss_pred HHHHH
Q 022288 111 IQYQQ 115 (299)
Q Consensus 111 ~qlqq 115 (299)
.++.+
T Consensus 125 ~~~~~ 129 (484)
T 3lss_A 125 KEAQQ 129 (484)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 322
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=41.50 E-value=36 Score=27.32 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=8.6
Q ss_pred HHHHHhhhHHHHHHHHHHH
Q 022288 95 LREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 95 LRdEns~LksE~e~L~~ql 113 (299)
..+++..|+..+..|+.|+
T Consensus 94 e~~~~~~L~~~i~~Le~el 112 (117)
T 3kin_B 94 EKEKNKALKSVIQHLEVEL 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 323
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=41.44 E-value=64 Score=24.94 Aligned_cols=16 Identities=38% Similarity=0.283 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHHHHH
Q 022288 81 LTEESRELTQEKNDLR 96 (299)
Q Consensus 81 L~eE~~eLk~EkNELR 96 (299)
|..|+=.+..|-|-|+
T Consensus 51 LNDEiislNIENNlL~ 66 (75)
T 3a7o_A 51 LNDELISGTIENNVLQ 66 (75)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhHHHHHHHH
Confidence 3333333333333333
No 324
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=41.21 E-value=1.3e+02 Score=24.98 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHH-HHhhhHHHHHHHH--------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 63 LLKDLTSQVEKLKT-EHAALTEESRELT--------QEKNDLREEKLSLRSEIENLNIQYQQRVRA 119 (299)
Q Consensus 63 ylKdLr~qVq~Lk~-en~~L~eE~~eLk--------~EkNELRdEns~LksE~e~L~~qlqqrl~~ 119 (299)
-++.|+++++.|+. +.-.+-+.+.+.+ .|...-+++...+...|..|+ .+|+.
T Consensus 10 g~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsENaeY~aak~~q~~~e~ri~~Le----~~L~~ 71 (158)
T 1grj_A 10 GAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIE----AKLSN 71 (158)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHHHhccchhhHhhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHH----HHHhh
Confidence 35667777777765 2333333333332 344445555556666666665 55554
No 325
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=41.15 E-value=73 Score=30.29 Aligned_cols=45 Identities=16% Similarity=0.327 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
.|+.++++|.+....|+++++.-..+.-+|..+.+.||-++-.|.
T Consensus 209 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~ 253 (373)
T 3hhm_B 209 KLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLR 253 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 345555555555556666655555555555556666666655444
No 326
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=40.80 E-value=1.1e+02 Score=22.93 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 67 LTSQVEKLKTEHAALTEESRELTQEKN 93 (299)
Q Consensus 67 Lr~qVq~Lk~en~~L~eE~~eLk~EkN 93 (299)
++.+++.|...++.|+.++..|..+.+
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555543
No 327
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=40.24 E-value=24 Score=27.95 Aligned_cols=20 Identities=20% Similarity=0.144 Sum_probs=11.3
Q ss_pred HHHHHHhhhHHHHHHHHHHH
Q 022288 94 DLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 94 ELRdEns~LksE~e~L~~ql 113 (299)
.|+++...|+.++.+|+.++
T Consensus 11 ~l~~~~~~l~~~i~~lkeel 30 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEV 30 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666555444
No 328
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=39.74 E-value=85 Score=24.35 Aligned_cols=70 Identities=21% Similarity=0.273 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHcCCCccCCCcccc
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNI---QYQQRVRAMVPWAAMDHSVMM 132 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~---qlqqrl~~~~pw~~~dps~~~ 132 (299)
+-+...-++.||..+.++ ..+.|++-...|..-..|-|+|-...+.+...-+. +|.+.|..- |+||.-++
T Consensus 7 ~lk~L~niR~LRA~arel--~le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~~~----GI~~eeL~ 79 (86)
T 3nr7_A 7 ALKILNNIRTLRAQARES--TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIAD----GIDPNELL 79 (86)
T ss_dssp HHHHHTCHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CCCHHHHH
T ss_pred HHHHHhhHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCHHHHH
Confidence 345555677888887765 34455555555666556655555444444433333 333444443 67775443
No 329
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=39.73 E-value=1.5e+02 Score=24.02 Aligned_cols=58 Identities=24% Similarity=0.267 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEK----LSLRSEIENLNIQYQ 114 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEn----s~LksE~e~L~~qlq 114 (299)
-+-+.+.+++|..+|..|+.....+..+.+.-.+|.+.--..- .+...+|.+|..-+|
T Consensus 37 E~~~~rilhdl~seV~~LK~dv~~~L~k~~~e~qe~~~FIKa~kvL~~rns~DI~~ire~fq 98 (101)
T 4aj5_1 37 EDYPMRILYDLHSEVQTLKDDINILLDKARLENQEGIDFIKATKVLMEKNSMDIMKIREYFQ 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4678899999999999999887776666655555555432222 344556666664433
No 330
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=39.67 E-value=1.1e+02 Score=29.96 Aligned_cols=53 Identities=11% Similarity=0.176 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
...+++|=+...+++.+++..+......+.+|+...+-.+.....|+..+..|
T Consensus 79 ~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l 131 (411)
T 3ghg_C 79 IDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQL 131 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888777777777777766544444444444444333
No 331
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=39.66 E-value=1.4e+02 Score=23.80 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHH-----HHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 68 TSQVEKLKTEHAALTEESRELTQ-----EKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 68 r~qVq~Lk~en~~L~eE~~eLk~-----EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
..+++.|+.-..-|.+|-..|.. ....+-++|..|-.++..++.+..+-+..+
T Consensus 14 ~~~~~~l~~L~~lL~~E~~~L~~~~d~~~L~~i~~~K~~ll~~L~~~~~~R~~~l~~l 71 (154)
T 3opc_A 14 ERENALVVEFLHALEAETEALMDRRAHESLQAAVQRKETLADDLAQLGAERDALLSGA 71 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333333333344444444433 455566777777788888877766666654
No 332
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=39.11 E-value=1.4e+02 Score=23.57 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=16.5
Q ss_pred hhHHHHH-HHHHHHHHHHHHHhhhHH--HHHHHHHHHH
Q 022288 80 ALTEESR-ELTQEKNDLREEKLSLRS--EIENLNIQYQ 114 (299)
Q Consensus 80 ~L~eE~~-eLk~EkNELRdEns~Lks--E~e~L~~qlq 114 (299)
.|+..++ +|.-..+.|..+...|-. +++||-++|.
T Consensus 37 ~LR~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~ 74 (97)
T 1hs7_A 37 ELRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFK 74 (97)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHH
Confidence 3444555 555555555554443333 4445544443
No 333
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=38.92 E-value=45 Score=23.57 Aligned_cols=10 Identities=20% Similarity=0.408 Sum_probs=3.8
Q ss_pred HHHHhhhHHH
Q 022288 96 REEKLSLRSE 105 (299)
Q Consensus 96 RdEns~LksE 105 (299)
|.|.+.+|.|
T Consensus 21 RkElqK~K~E 30 (45)
T 1use_A 21 KKELQKVKEE 30 (45)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 334
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=38.84 E-value=56 Score=26.61 Aligned_cols=53 Identities=13% Similarity=0.190 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVR 118 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~ 118 (299)
-|+.++...+.++..|.+++.+|+.....|..|..=.=+-+..++.-+|....
T Consensus 8 al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~~ 60 (106)
T 4e61_A 8 AIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQD 60 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555544333333355555555443
No 335
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=38.82 E-value=1.6e+02 Score=29.10 Aligned_cols=18 Identities=11% Similarity=0.172 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022288 59 DTVQLLKDLTSQVEKLKT 76 (299)
Q Consensus 59 DAI~ylKdLr~qVq~Lk~ 76 (299)
.|-+||+.|+...+..+.
T Consensus 118 ~~~~~i~~Iq~slk~~Q~ 135 (464)
T 1m1j_B 118 TMYQYVNMIDNKLVKTQK 135 (464)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccc
Confidence 455555555555544443
No 336
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=38.59 E-value=33 Score=34.56 Aligned_cols=37 Identities=19% Similarity=0.155 Sum_probs=18.4
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022288 76 TEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQ 112 (299)
Q Consensus 76 ~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~q 112 (299)
.+...+.++++.+..+.++|+.....++.++.++-.+
T Consensus 359 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~ 395 (695)
T 2j69_A 359 QDVNELKKRIDSVEPEFNKLTGIRDEFQKEIINTRDT 395 (695)
T ss_dssp SCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555555555444333
No 337
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=38.42 E-value=21 Score=25.17 Aligned_cols=23 Identities=13% Similarity=0.136 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHH
Q 022288 61 VQLLKDLTSQVEKLKTEHAALTE 83 (299)
Q Consensus 61 I~ylKdLr~qVq~Lk~en~~L~e 83 (299)
-.||.+|+.+|+.|+..+..|..
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 37888888888888877766543
No 338
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1
Probab=38.23 E-value=87 Score=23.03 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQEKNDL 95 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~EkNEL 95 (299)
+..|..+-+.++..+....+.+..|....++|
T Consensus 38 v~~Llkkh~~fe~~~~~~~~~i~~l~~~a~~L 69 (107)
T 2spc_A 38 VEALIKKHEDFDKAINGHEQKIAALQTVADQL 69 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443333
No 339
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=38.21 E-value=36 Score=30.29 Aligned_cols=41 Identities=17% Similarity=0.241 Sum_probs=21.9
Q ss_pred hhhhHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 53 KATILADTVQ-LLKDLTSQVEKLKTEHAALTEESRELTQEKN 93 (299)
Q Consensus 53 KASIL~DAI~-ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkN 93 (299)
|++==+++|+ +|.....++.+|+.+|..|++|.+-|..|-|
T Consensus 144 ~V~nPaE~irELi~~~L~~i~~L~a~N~hLqkENeRL~~e~~ 185 (186)
T 3q4f_C 144 KVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWN 185 (186)
T ss_dssp ECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333344442 3444556666666666666666666655543
No 340
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=37.67 E-value=86 Score=21.86 Aligned_cols=14 Identities=29% Similarity=0.330 Sum_probs=5.5
Q ss_pred HHHHHHHhhhHHHH
Q 022288 72 EKLKTEHAALTEES 85 (299)
Q Consensus 72 q~Lk~en~~L~eE~ 85 (299)
.+|+..+..|++..
T Consensus 6 kelknyiqeleern 19 (46)
T 3he4_B 6 KELKNYIQELEERN 19 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 33444443333333
No 341
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=37.48 E-value=1.3e+02 Score=30.76 Aligned_cols=53 Identities=13% Similarity=0.197 Sum_probs=36.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcC-CCcc
Q 022288 73 KLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMV-PWAA 125 (299)
Q Consensus 73 ~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~-pw~~ 125 (299)
+|+..+..|+++++..-..+..||.-...+..+|-|||.-+..+|+... |.+-
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr 167 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSR 167 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 4444445555555555556666777777778888899999999998864 5553
No 342
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.95 E-value=26 Score=33.82 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH
Q 022288 84 ESRELTQEKNDLREEKLSLRSEIEN 108 (299)
Q Consensus 84 E~~eLk~EkNELRdEns~LksE~e~ 108 (299)
+++.|+.|..-+..|+..|+.++..
T Consensus 40 e~~~l~~e~~r~~~e~~~~~~~~~~ 64 (434)
T 4b4t_M 40 EIRIFRSELQRLSHENNVMLEKIKD 64 (434)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344433333
No 343
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=36.81 E-value=1.9e+02 Score=24.32 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022288 58 ADTVQLLKDLTSQVEKLKTEHAALTEESRELTQ 90 (299)
Q Consensus 58 ~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~ 90 (299)
..+.++.++..+....|.+.|..|..|+++-++
T Consensus 68 ~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~ 100 (152)
T 4fla_A 68 EAAERLSKTVDEACLLLAEYNGRLAAELEDRRQ 100 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555666666656555544443
No 344
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=36.66 E-value=49 Score=25.80 Aligned_cols=73 Identities=14% Similarity=0.320 Sum_probs=34.1
Q ss_pred HHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022288 32 RLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNI 111 (299)
Q Consensus 32 KLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ 111 (299)
.|+..+..|..+ ....|-..|.++=+.|.+..+-|+.++-|...+.. ..+..+.......|+++.+|+.
T Consensus 20 ~i~~kl~~i~~~-----~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~------~~R~~~~~klr~Yk~dL~~lk~ 88 (102)
T 1vcs_A 20 EITSKIARVPRL-----PPDEKKQMVANVEKQLEEARELLEQMDLEVREIPP------QSRGMYSNRMRSYKQEMGKLET 88 (102)
T ss_dssp HHHHHHHHGGGS-----CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT------TTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HhHHHHHHHHHHHHHHHHHHHH
Confidence 344555544432 23344444555555555555555555554444432 1233333344444555555554
Q ss_pred HHHH
Q 022288 112 QYQQ 115 (299)
Q Consensus 112 qlqq 115 (299)
+++.
T Consensus 89 elk~ 92 (102)
T 1vcs_A 89 DFKR 92 (102)
T ss_dssp HTHH
T ss_pred HHHH
Confidence 4443
No 345
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=36.44 E-value=1.2e+02 Score=22.07 Aligned_cols=33 Identities=3% Similarity=0.113 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 56 ILADTVQLLKDLTSQVEKLKTEHAALTEESREL 88 (299)
Q Consensus 56 IL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eL 88 (299)
.+..-+.-++.|+.+|..-+..+..+......|
T Consensus 37 ~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L 69 (118)
T 3uul_A 37 DVKEQFATHETFMMELSAHQSSVGSVLQAGNQL 69 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666665555554444444
No 346
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=36.14 E-value=65 Score=26.17 Aligned_cols=25 Identities=4% Similarity=0.189 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 86 RELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 86 ~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
..|...+.+|..+...|+..+..|+
T Consensus 98 ~~l~~~~~~l~~~i~~L~~~~~~L~ 122 (148)
T 3gpv_A 98 KLMKQQEANVLQLIQDTEKNLKKIQ 122 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 347
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=36.07 E-value=81 Score=23.48 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKL 100 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns 100 (299)
|.+||.+|..+..++-.|-++--.+..+.-+++.++.
T Consensus 5 L~~lR~~ID~iD~~l~~Ll~~R~~~~~~i~~~K~~~~ 41 (90)
T 2d8d_A 5 IQALRKEVDRVNREILRLLSERGRLVQEIGRLQTELG 41 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 6788888888888888877777777777777766553
No 348
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=36.03 E-value=1.3e+02 Score=25.00 Aligned_cols=48 Identities=10% Similarity=0.100 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHH-HHhhhHHHHHHHH--------HHHHHHHHHHhhhHHHHHHHH
Q 022288 63 LLKDLTSQVEKLKT-EHAALTEESRELT--------QEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 63 ylKdLr~qVq~Lk~-en~~L~eE~~eLk--------~EkNELRdEns~LksE~e~L~ 110 (299)
-++.|+++++.|+. +...+.+++.+-+ .|...-+++...+...|..|+
T Consensus 10 g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~ 66 (158)
T 2p4v_A 10 GYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLT 66 (158)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 35667777777754 2333333333332 233334555556666666555
No 349
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=35.95 E-value=2.2e+02 Score=24.89 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhhccCCCC
Q 022288 30 RDRLNEHFTELGNALDPDR 48 (299)
Q Consensus 30 RdKLNErF~eLrslLvP~~ 48 (299)
|++++....+|+.-|.|-.
T Consensus 127 ~~~~~~~~eel~~~L~p~~ 145 (243)
T 2a01_A 127 QEGARQKLHELQEKLSPLG 145 (243)
T ss_dssp HHHHHHHHHHHCCSCCSST
T ss_pred HHHHHhhHHHHHHHHHhHH
Confidence 5677888888888877765
No 350
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=35.81 E-value=1e+02 Score=27.72 Aligned_cols=60 Identities=23% Similarity=0.350 Sum_probs=40.4
Q ss_pred hhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 022288 40 LGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEI 106 (299)
Q Consensus 40 LrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~ 106 (299)
|-.++.|.-. -.+-.+.+.+|+++.-..-.+...|+.....|+.|.++|+.....|+.+.
T Consensus 15 ~~~~~~~~~~-------~~~~~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~ 74 (206)
T 3oa7_A 15 LNKLLDPELA-------QSERTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNT 74 (206)
T ss_dssp HHHHHCTTCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCG
T ss_pred HHHhcCHhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCH
Confidence 4455566542 34566777788877776666666677777777777777777777766554
No 351
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=35.64 E-value=60 Score=27.20 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 022288 25 REKLRRDRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLK 75 (299)
Q Consensus 25 rERrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk 75 (299)
.|+.-=.+||+++..++.=|.. ....+.+.|++.-.+-+..|..+|+.|+
T Consensus 7 ~~K~Eiq~L~drLD~~~rKlaa-a~~rgd~~~i~qf~~E~~~l~k~I~~lk 56 (123)
T 2lf0_A 7 VEKNEIKRLSDRLDAIRHQQAD-LSLVEAADKYAELEKEKATLEAEIARLR 56 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH-SCTTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555678888887765422 2233334444444444444444444443
No 352
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=35.59 E-value=92 Score=21.87 Aligned_cols=11 Identities=36% Similarity=0.549 Sum_probs=6.3
Q ss_pred HHHHHHHHHHH
Q 022288 66 DLTSQVEKLKT 76 (299)
Q Consensus 66 dLr~qVq~Lk~ 76 (299)
-|+.+++.|+.
T Consensus 4 alkselqalkk 14 (48)
T 1g6u_A 4 ALKSELQALKK 14 (48)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45566666654
No 353
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=35.47 E-value=1.1e+02 Score=28.34 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTE 83 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~e 83 (299)
+|+..|++++++|+++.+.++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~ 268 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALK 268 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555543
No 354
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=35.28 E-value=1.8e+02 Score=23.74 Aligned_cols=27 Identities=11% Similarity=0.305 Sum_probs=14.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 94 DLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 94 ELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
+++++...|-.++.++-..++.+|+.+
T Consensus 46 ~~~~~i~~l~~~i~~~~~~~~~~lk~l 72 (196)
T 1fio_A 46 HLRHSLDNFVAQATDLQFKLKNEIKSA 72 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555554
No 355
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=34.93 E-value=1.7e+02 Score=23.26 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022288 58 ADTVQLLKDLTSQVEKLK 75 (299)
Q Consensus 58 ~DAI~ylKdLr~qVq~Lk 75 (299)
.++-++.++|..++.+++
T Consensus 25 ~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 25 VDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445556666666666654
No 356
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.71 E-value=54 Score=31.58 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 85 SRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 85 ~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
+++.......|..+...|..++..++
T Consensus 34 ~~~~~~~~~~l~~~~~~l~~~~~~~~ 59 (405)
T 4b4t_J 34 IRSKTENVRRLEAQRNALNDKVRFIK 59 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333443333333
No 357
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=34.17 E-value=1.3e+02 Score=21.77 Aligned_cols=35 Identities=6% Similarity=0.114 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 54 ATILADTVQLLKDLTSQVEKLKTEHAALTEESREL 88 (299)
Q Consensus 54 ASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eL 88 (299)
...+..-++-++.|..+|..-+..+..+......|
T Consensus 35 ~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L 69 (119)
T 3uun_A 35 VEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKL 69 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33455566667777777776666665555544444
No 358
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=34.05 E-value=1.7e+02 Score=27.79 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
|...+..|+.|-++|.+|-.++...+. ...-..-|+|+|+...|-.|+.+|
T Consensus 98 i~~~V~~iN~l~~qIa~LN~qI~~~~~--~~~g~~~ndLlDqRD~ll~eLS~~ 148 (463)
T 2d4y_A 98 IGSSVAQINNYAKQIANLNDQISRMTG--VGAGASPNDLLDQRDQLVSELNKI 148 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCCCCchHhHHHHHHHHHHHHhh
Confidence 566667777777777766665543211 001245677888877777666655
No 359
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=33.90 E-value=95 Score=21.66 Aligned_cols=30 Identities=13% Similarity=0.397 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQEKNDL 95 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~EkNEL 95 (299)
+|-.+++++..+++..++.+.+|+....+|
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554444444
No 360
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=33.49 E-value=2.1e+02 Score=24.08 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 022288 62 QLLKDLTSQVEKLKTEHAAL 81 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L 81 (299)
+|++.|.++++.-+.-...|
T Consensus 86 eYn~rL~~E~~dR~~L~~~L 105 (152)
T 4fla_A 86 EYNGRLAAELEDRRQLARML 105 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556666655444333333
No 361
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.44 E-value=38 Score=32.64 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=10.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhH
Q 022288 70 QVEKLKTEHAALTEESRELTQEKNDLREEKLSLR 103 (299)
Q Consensus 70 qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~Lk 103 (299)
+++.|+.++..|..+...++.|.+.|+++...++
T Consensus 33 r~~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~ 66 (434)
T 4b4t_M 33 RAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNK 66 (434)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444443333333
No 362
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=33.37 E-value=1.1e+02 Score=26.35 Aligned_cols=38 Identities=34% Similarity=0.348 Sum_probs=14.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 72 EKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 72 q~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
..++..+..|.+++..|+.|...|.+++..+.+-...|
T Consensus 83 k~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgL 120 (146)
T 2xnx_M 83 GNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSL 120 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC-------
T ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33334444444444445555555555554444443333
No 363
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=32.82 E-value=1e+02 Score=24.77 Aligned_cols=42 Identities=26% Similarity=0.249 Sum_probs=28.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 73 KLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 73 ~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlq 114 (299)
+|++....|-+.+..|..|+-+|......-.-||..|..++.
T Consensus 46 ~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~ 87 (107)
T 1ytz_T 46 KLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRID 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHH
Confidence 445555556666677777788887777777788888874443
No 364
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=32.42 E-value=65 Score=30.19 Aligned_cols=25 Identities=8% Similarity=0.199 Sum_probs=12.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 95 LREEKLSLRSEIENLNIQYQQRVRA 119 (299)
Q Consensus 95 LRdEns~LksE~e~L~~qlqqrl~~ 119 (299)
|+.+...|+..|.+|+..++++...
T Consensus 33 Lq~~le~L~~KI~~LE~~v~~q~~~ 57 (323)
T 1lwu_B 33 MKSVLEHLRAKMQRMEEAIKTQKEL 57 (323)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455566666555554443
No 365
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=32.40 E-value=1.1e+02 Score=21.66 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHH-hhhHHHH
Q 022288 86 RELTQEKNDLREEK-LSLRSEI 106 (299)
Q Consensus 86 ~eLk~EkNELRdEn-s~LksE~ 106 (299)
.+++.|.+.+++|. ..+++|+
T Consensus 18 ~E~RkElqK~K~EIIeAi~~El 39 (45)
T 1use_A 18 EEVKKELQKVKEEIIEAFVQEL 39 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443 2444443
No 366
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=32.40 E-value=2.5e+02 Score=24.40 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHH
Q 022288 86 RELTQEKNDLREEKLSLRSEI 106 (299)
Q Consensus 86 ~eLk~EkNELRdEns~LksE~ 106 (299)
.+++...+++-++...|..+.
T Consensus 89 e~~r~~l~~~l~~~~~L~~~~ 109 (192)
T 2p22_C 89 HEQKDKVQALLENARILESKY 109 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444
No 367
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=32.38 E-value=1.1e+02 Score=24.75 Aligned_cols=43 Identities=12% Similarity=0.095 Sum_probs=34.1
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 78 HAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 78 n~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
.+.|...++.|+.....|......++.++..++..+++.+..+
T Consensus 100 ~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~ 142 (151)
T 2zdi_C 100 ISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQ 142 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888888888888888888888888777654
No 368
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=32.23 E-value=44 Score=27.95 Aligned_cols=86 Identities=20% Similarity=0.357 Sum_probs=0.0
Q ss_pred HHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----------HHHHHhhh
Q 022288 33 LNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKND----------LREEKLSL 102 (299)
Q Consensus 33 LNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNE----------LRdEns~L 102 (299)
|.||..+|+.. -......-..+..+.-..+.+...+|+.+...+..+...+.+|..-... ...+...+
T Consensus 13 mkDr~~el~~~--~~~~~~~~~~~~~~~~~~m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~~~~~~~~~~~~~ 90 (279)
T 3c98_B 13 MKDRTQELRTA--KDSDDDDDVTVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEEL 90 (279)
T ss_dssp -CCCCTTTC-------------------CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSHHHHHHHHH
T ss_pred hHHHHHHHHHh--hhcccccchhhhcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHc
Q 022288 103 RSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 103 ksE~e~L~~qlqqrl~~~ 120 (299)
-.++.++-.+++..+..+
T Consensus 91 ~~~i~~~~~~i~~~~~~i 108 (279)
T 3c98_B 91 MSDIKKTANKVRSKLKSI 108 (279)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
No 369
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=32.04 E-value=55 Score=29.09 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTE 83 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~e 83 (299)
++-+++.|.+|++++..|+++|+.|..
T Consensus 156 i~~~L~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 156 ICYCLDTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 370
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=31.73 E-value=20 Score=30.25 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 67 LTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 67 Lr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
+..++.+|+-.+..++.+++-=++--.+=+...+.|+.--..|-.+|...|+..
T Consensus 53 ~~~~~d~L~lQ~esmeaalkmEr~~~~eEKrkLAqLQ~AY~~LfqeYd~~lK~~ 106 (130)
T 3cl3_D 53 HSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQLFQEYDNHIKSS 106 (130)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444332222222222233456666666666666666553
No 371
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=31.55 E-value=2.7e+02 Score=24.50 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 60 TVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLR 96 (299)
Q Consensus 60 AI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELR 96 (299)
--++.++|-..|..|+++-=.|+..+..-.-|+++|+
T Consensus 60 L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~ 96 (182)
T 1ytz_I 60 LQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLS 96 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHH
Confidence 3445556666666565554444444444344444443
No 372
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=31.43 E-value=74 Score=28.23 Aligned_cols=53 Identities=11% Similarity=0.280 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 022288 66 DLTSQVEKLKTEHAALTEESRELTQE----KNDLREEKLSLRSEIENLNIQYQQRVR 118 (299)
Q Consensus 66 dLr~qVq~Lk~en~~L~eE~~eLk~E----kNELRdEns~LksE~e~L~~qlqqrl~ 118 (299)
.+...+..+++.+..|.+.+.+|+.+ .+++......|......|..+++.|+.
T Consensus 169 ~ie~dL~~~e~~i~~l~~~a~~L~~~~y~~a~~i~~r~~~l~~~w~~L~~~~~~r~~ 225 (235)
T 2odv_A 169 EVERDLDKADSMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHKRLVAIRTEYNLRLK 225 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444442 233444455666666777777777765
No 373
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=31.36 E-value=2.5e+02 Score=24.00 Aligned_cols=7 Identities=29% Similarity=0.539 Sum_probs=2.6
Q ss_pred CCccCCC
Q 022288 176 TFVPYMA 182 (299)
Q Consensus 176 ~~~py~~ 182 (299)
.|-+|..
T Consensus 288 ~fe~~~~ 294 (305)
T 2efl_A 288 EFEDYTQ 294 (305)
T ss_dssp CCCCCC-
T ss_pred CCcCCCC
Confidence 3444443
No 374
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=31.34 E-value=3.3e+02 Score=26.63 Aligned_cols=61 Identities=13% Similarity=0.214 Sum_probs=31.9
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHH-------HHHHHhhhHHHHHHHHHH
Q 022288 52 DKATILADTVQLLKDLTSQVEKLKT----EHAALTEESRELTQEKND-------LREEKLSLRSEIENLNIQ 112 (299)
Q Consensus 52 DKASIL~DAI~ylKdLr~qVq~Lk~----en~~L~eE~~eLk~EkNE-------LRdEns~LksE~e~L~~q 112 (299)
+=-.......+++++-+++++..+. ..+.|+..+.+|+...++ ||.-...+..+|.|||.-
T Consensus 85 ~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~ 156 (390)
T 1deq_A 85 DSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVD 156 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4344555566666666666654443 223556666666655443 344444444445555543
No 375
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=30.80 E-value=1.5e+02 Score=21.43 Aligned_cols=37 Identities=19% Similarity=0.177 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 59 DTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDL 95 (299)
Q Consensus 59 DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNEL 95 (299)
..+..|+.+..+.+.|..++......++.|......|
T Consensus 33 ~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L 69 (119)
T 3uun_A 33 NDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKL 69 (119)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555444
No 376
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=30.46 E-value=2.4e+02 Score=24.48 Aligned_cols=62 Identities=19% Similarity=0.145 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCCCcc
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRAMVPWAA 125 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~~~pw~~ 125 (299)
|..|+.++.-.+.-...|....+.|..|.-++.++...++.+++.+-......+....-|.+
T Consensus 19 L~~lK~rL~~a~rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g 80 (217)
T 3aon_A 19 LTRLKKQLTTATRGHKLLKDKQDELMRQFILLIRKNNELRQAIEKETQTAMKDFVLAKSTVE 80 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55677777777777778888888888888888888888888888765555555544434444
No 377
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=30.25 E-value=1.4e+02 Score=23.33 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=7.1
Q ss_pred HHHHHHHHHHhhhc
Q 022288 30 RDRLNEHFTELGNA 43 (299)
Q Consensus 30 RdKLNErF~eLrsl 43 (299)
|.+-.+++..|+.=
T Consensus 35 rqkekEqL~~LKkk 48 (84)
T 1gmj_A 35 RARAKEQLAALKKH 48 (84)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33445556655543
No 378
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=29.98 E-value=2.5e+02 Score=23.62 Aligned_cols=48 Identities=17% Similarity=0.224 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 022288 31 DRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHA 79 (299)
Q Consensus 31 dKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~ 79 (299)
+.++..+..|+.-|.|-... =...+..++-..=..|+..+++|+..+.
T Consensus 69 d~l~~~~~~l~~~L~P~t~e-l~~~l~~~~e~Lr~~L~~d~EelR~~l~ 116 (165)
T 1gs9_A 69 KELKAYKSELEEQLTPVAEE-TRARLSKELQAAQARLGADMEDVRGRLV 116 (165)
T ss_dssp HHHHHHHHHHTTSCCCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777888888887521 1223333333333345555555655443
No 379
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=29.95 E-value=1.5e+02 Score=21.83 Aligned_cols=20 Identities=15% Similarity=0.391 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHhhhH
Q 022288 63 LLKDLTSQVEKLKTEHAALT 82 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~ 82 (299)
.|=.|+.+|++|+.++..|.
T Consensus 11 tVYaLkDqV~eL~qe~k~m~ 30 (56)
T 2w6b_A 11 TVYALKDEVQELRQDNKKMK 30 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666665443
No 380
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=29.83 E-value=57 Score=28.06 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=18.5
Q ss_pred hhccchHHHHHHHHHHHHHHHHhhhcc
Q 022288 18 RKMQKADREKLRRDRLNEHFTELGNAL 44 (299)
Q Consensus 18 Rk~~KAerERrRRdKLNErF~eLrslL 44 (299)
|+..-...|++|+...++.+..|..+|
T Consensus 23 Kk~~w~~~e~~r~~~~~~l~~~~~~l~ 49 (179)
T 2f42_A 23 KKKRWNSIEEKRISQENELHAYLSKLI 49 (179)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444567777777888888888774
No 381
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=29.75 E-value=1.9e+02 Score=23.83 Aligned_cols=10 Identities=10% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHhhh
Q 022288 33 LNEHFTELGN 42 (299)
Q Consensus 33 LNErF~eLrs 42 (299)
++||+.+|+.
T Consensus 7 mkDRl~eL~~ 16 (180)
T 1s94_A 7 TKDRLAALKA 16 (180)
T ss_dssp ----------
T ss_pred hhHHHHHHhc
Confidence 4566666665
No 382
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=29.66 E-value=2.1e+02 Score=23.05 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=9.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHH
Q 022288 74 LKTEHAALTEESRELTQEKNDLRE 97 (299)
Q Consensus 74 Lk~en~~L~eE~~eLk~EkNELRd 97 (299)
|++..+.|.+++.+|..-...|..
T Consensus 86 L~~~~~~l~~~i~~L~~~~~~L~~ 109 (142)
T 3gp4_A 86 LKKQRIELKNRIDVMQEALDRLDF 109 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444433333333
No 383
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=29.53 E-value=20 Score=34.33 Aligned_cols=22 Identities=14% Similarity=0.071 Sum_probs=15.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHH
Q 022288 96 REEKLSLRSEIENLNIQYQQRV 117 (299)
Q Consensus 96 RdEns~LksE~e~L~~qlqqrl 117 (299)
.+|...|+.+++.|+.+|+.-|
T Consensus 59 ~~e~~~l~~~l~~le~~l~~lL 80 (342)
T 1rq0_A 59 ELEIEKYEKELDQLYQELLFLL 80 (342)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 5567778888888876666544
No 384
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=29.51 E-value=1.1e+02 Score=26.74 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022288 56 ILADTVQLLKDLTSQVEKLKTEHAALTEESRELTQE 91 (299)
Q Consensus 56 IL~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~E 91 (299)
|++.|-+-++.|+.++..|++++....++...+..+
T Consensus 129 li~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~e 164 (175)
T 3mud_A 129 LICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQM 164 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666665555555554444
No 385
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=29.51 E-value=72 Score=20.95 Aligned_cols=21 Identities=38% Similarity=0.434 Sum_probs=8.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHH
Q 022288 71 VEKLKTEHAALTEESRELTQE 91 (299)
Q Consensus 71 Vq~Lk~en~~L~eE~~eLk~E 91 (299)
|..|+.+....+.|.-.|.+|
T Consensus 3 vaqlekevaqaeaenyqleqe 23 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQE 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHH
Confidence 444544444444433333333
No 386
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=29.41 E-value=2.1e+02 Score=23.08 Aligned_cols=31 Identities=10% Similarity=0.193 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 80 ALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 80 ~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
.|.+...+|..+..+|+.-...|..-+..++
T Consensus 99 ~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 99 LMKQQEANVLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544445544444444
No 387
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1
Probab=29.19 E-value=71 Score=29.51 Aligned_cols=41 Identities=17% Similarity=0.303 Sum_probs=26.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 022288 78 HAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVR 118 (299)
Q Consensus 78 n~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~ 118 (299)
...|.++.++.+.+.+++.+++..+..=+..||.|+-..++
T Consensus 231 ~~~L~e~A~~~e~~i~~l~~~~~e~~~~V~~LE~~~D~~~~ 271 (319)
T 2p90_A 231 LLALERDAEKVHRQLMEQTEESSEIQRVVGALEQQYDSELE 271 (319)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhh
Confidence 35566666667777777776666666666677766665554
No 388
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=28.76 E-value=2e+02 Score=27.32 Aligned_cols=46 Identities=20% Similarity=0.364 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH------HHhhhHHHHHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLRE------EKLSLRSEIENLN 110 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRd------Ens~LksE~e~L~ 110 (299)
+++..+...|.........+.+.+..+..|+.. |...|..++.+|.
T Consensus 189 ~~~~~~~~~l~~~~~~~~~~l~~l~~ql~ei~~~~l~~~E~e~L~~~~~~L~ 240 (517)
T 4ad8_A 189 REAVSRLERLQASQRERARQIDLLAFQVQEISEVSPDPGEEEGLNTELSRLS 240 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 333333433333333334444555555555554 4455555555554
No 389
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=28.75 E-value=2.8e+02 Score=24.95 Aligned_cols=52 Identities=13% Similarity=0.256 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
.+.+-|..+...+++.+..|..++...+.|.|-++......+.+...+..++
T Consensus 164 ~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~ 215 (228)
T 3q0x_A 164 VVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQY 215 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777776666666666655555555555555554444444443
No 390
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=28.57 E-value=1.7e+02 Score=21.14 Aligned_cols=25 Identities=12% Similarity=0.336 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 91 EKNDLREEKLSLRSEIENLNIQYQQ 115 (299)
Q Consensus 91 EkNELRdEns~LksE~e~L~~qlqq 115 (299)
+....+.|...|+..+..|+.+|+.
T Consensus 50 ~l~~~k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 50 ALRQAKQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444567777777777777777654
No 391
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=28.43 E-value=2.1e+02 Score=22.27 Aligned_cols=39 Identities=10% Similarity=0.050 Sum_probs=14.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 72 EKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 72 q~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
+.+...+..|+.++..++.+....-.|-..|.+=+..|+
T Consensus 40 ~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le 78 (95)
T 3mov_A 40 DNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALD 78 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444443333333333333433344444
No 392
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=28.32 E-value=25 Score=33.85 Aligned_cols=74 Identities=24% Similarity=0.302 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhhcc-CCCC-CCCCh-------hhhHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHH
Q 022288 30 RDRLNEHFTELGNAL-DPDR-PKNDK-------ATILADTVQLLKDLTSQVEKLKTEHA-ALTEESRELTQEKNDLREEK 99 (299)
Q Consensus 30 RdKLNErF~eLrslL-vP~~-~K~DK-------ASIL~DAI~ylKdLr~qVq~Lk~en~-~L~eE~~eLk~EkNELRdEn 99 (299)
=+.+.++|.+|...| .|+. ...+| .+-|.+.+..+++|+..++.++.-.+ -+.++ + .++.+|.
T Consensus 19 l~~~~~r~~ele~~l~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~e~l~~ee-d------~~a~~e~ 91 (365)
T 2ihr_1 19 IPQKETRLKELERRLEDPSLWNDPEAARKVSQEAARLRRTVDTFRSLESDLQGLLELMEELPAEE-R------EALKPEL 91 (365)
T ss_dssp HHHHHHHHTTTTTSTTCGGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHHHTTCSCCTT-G------GGTGGGT
T ss_pred HHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-H------HHHHHHH
Confidence 355677788887654 3432 12233 34455555555555555555544333 22111 0 4566677
Q ss_pred hhhHHHHHHHH
Q 022288 100 LSLRSEIENLN 110 (299)
Q Consensus 100 s~LksE~e~L~ 110 (299)
..|+.+++.|+
T Consensus 92 ~~l~~~~~~le 102 (365)
T 2ihr_1 92 EEAAKKLDELY 102 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777776
No 393
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=28.22 E-value=29 Score=23.08 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELT 89 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk 89 (299)
.|.-|+..++.|+.+.+.+++++..+.
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~~ 31 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARLK 31 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544443
No 394
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=27.93 E-value=82 Score=21.59 Aligned_cols=10 Identities=40% Similarity=0.448 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 022288 90 QEKNDLREEK 99 (299)
Q Consensus 90 ~EkNELRdEn 99 (299)
.+...|++|+
T Consensus 22 ~kl~~LkeEK 31 (38)
T 2l5g_A 22 EKLLALQEEK 31 (38)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333344443
No 395
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=27.90 E-value=2.1e+02 Score=22.12 Aligned_cols=18 Identities=22% Similarity=0.506 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKL 74 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~L 74 (299)
|.+|-++|.++.-+++.+
T Consensus 47 l~EA~ell~qMelE~r~~ 64 (102)
T 1vcs_A 47 LEEARELLEQMDLEVREI 64 (102)
T ss_dssp HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 444555555554444444
No 396
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=27.66 E-value=1.8e+02 Score=29.03 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=20.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHc
Q 022288 95 LREEKLSLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 95 LRdEns~LksE~e~L~~qlqqrl~~~ 120 (299)
|.++...|+.++..++.+++..|..+
T Consensus 110 ~~~~i~~~e~~~~~~~~~~~~~l~~i 135 (522)
T 3vbb_A 110 IDEAILKCDAERIKLEAERFENLREI 135 (522)
T ss_dssp HHHSCCCCHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45667788888899999998888775
No 397
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=27.60 E-value=1.3e+02 Score=21.73 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhhhHHHHHHH
Q 022288 69 SQVEKLKTEHAALTEESREL 88 (299)
Q Consensus 69 ~qVq~Lk~en~~L~eE~~eL 88 (299)
.-|.+|+..|..|+.++..|
T Consensus 24 nivarlendnanlekdianl 43 (56)
T 3he4_A 24 NIVARLENDNANLEKDIANL 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchHHHHHHHH
Confidence 33444444444444333333
No 398
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=27.56 E-value=61 Score=24.86 Aligned_cols=14 Identities=43% Similarity=0.503 Sum_probs=6.0
Q ss_pred HHHhhhHHHHHHHH
Q 022288 97 EEKLSLRSEIENLN 110 (299)
Q Consensus 97 dEns~LksE~e~L~ 110 (299)
+.+..||.||-+|+
T Consensus 50 eq~~lLK~EIRRlE 63 (71)
T 3bbp_D 50 EQIKLLKSEIRRLE 63 (71)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 399
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=27.46 E-value=54 Score=30.92 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=9.0
Q ss_pred HHHHHHhhhHHHHHHHHHH
Q 022288 94 DLREEKLSLRSEIENLNIQ 112 (299)
Q Consensus 94 ELRdEns~LksE~e~L~~q 112 (299)
+|+++...|+.+++.++..
T Consensus 424 ~l~~~~~~~~~~~~~~~~~ 442 (468)
T 3pxg_A 424 SLRDTEQRLREQVEDTKKS 442 (468)
T ss_dssp HHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444455555544433
No 400
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=27.14 E-value=2.3e+02 Score=23.22 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Q 022288 91 EKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 91 EkNELRdEns~LksE~e~L~~ql 113 (299)
+....+++...+...|..|+..|
T Consensus 47 ey~aak~~q~~~e~ri~~L~~~L 69 (156)
T 2f23_A 47 GLEAAKQEKARIEARIDSLEDIL 69 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667677777777776433
No 401
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=27.02 E-value=85 Score=25.08 Aligned_cols=27 Identities=30% Similarity=0.263 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 69 SQVEKLKTEHAALTEESRELTQEKNDL 95 (299)
Q Consensus 69 ~qVq~Lk~en~~L~eE~~eLk~EkNEL 95 (299)
.+.+++.+++..|.+.+..|..|.+.+
T Consensus 89 ~~~~~e~~~~~~L~~~i~~Le~el~~~ 115 (117)
T 3kin_B 89 KKYEKEKEKNKALKSVIQHLEVELNRW 115 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444444444444444433
No 402
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=26.85 E-value=3e+02 Score=23.49 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 022288 31 DRLNEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEHAALTEE 84 (299)
Q Consensus 31 dKLNErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en~~L~eE 84 (299)
+.||..+.+|+.-|.|-.... .+-|..++-.|-.+|+..+++|+..+....+|
T Consensus 69 ~~l~~~~~~l~~qL~P~~~e~-~~~l~~~~e~lr~~l~kdlEelr~kL~P~~eE 121 (191)
T 1nfn_A 69 KELKAYKSELEEQLTPVAEET-RARLSKELQAAQARLGADMEDVCGRLVQYRGE 121 (191)
T ss_dssp HHHHHHHHHHTTC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 345566777887777765321 23455566666666777777777665544443
No 403
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=26.84 E-value=2.3e+02 Score=27.46 Aligned_cols=45 Identities=13% Similarity=0.082 Sum_probs=23.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 73 KLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQQRV 117 (299)
Q Consensus 73 ~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl 117 (299)
++.+++..|+..+.....+...|+.....++..|..|+.++.+..
T Consensus 88 kml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 88 KIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 334444444444444444555666555566666666665444433
No 404
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=26.79 E-value=1.2e+02 Score=23.61 Aligned_cols=26 Identities=4% Similarity=0.056 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRE 87 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~e 87 (299)
.+.++|+.-++.|++.+..|.+-+.-
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i 61 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIV 61 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555444443
No 405
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=26.71 E-value=2.1e+02 Score=21.78 Aligned_cols=64 Identities=13% Similarity=0.250 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 56 ILADTVQLLKDLTSQVEKLKTEHAALT------EESRELTQEKNDLREEKLSLRSEIENLNIQYQQRVRA 119 (299)
Q Consensus 56 IL~DAI~ylKdLr~qVq~Lk~en~~L~------eE~~eLk~EkNELRdEns~LksE~e~L~~qlqqrl~~ 119 (299)
+..++....+.++.+++.|+..+..+. .+.+--+...+-|...-..+-.+--..|.+|+.+++.
T Consensus 55 l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~ 124 (127)
T 1ez3_A 55 LMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKG 124 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555666666666666555331 1122223333444544445555555566666666654
No 406
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=26.15 E-value=1e+02 Score=25.70 Aligned_cols=24 Identities=25% Similarity=0.554 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRE 87 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~e 87 (299)
|.+|...|.+|+..+..|..++..
T Consensus 63 leeL~~ki~eL~~kvA~le~e~~~ 86 (125)
T 2pms_C 63 LEELSDKIDELDAEIAKLEDQLKA 86 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544443
No 407
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=26.12 E-value=1.6e+02 Score=26.59 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHHHHc
Q 022288 101 SLRSEIENLNIQYQQRVRAM 120 (299)
Q Consensus 101 ~LksE~e~L~~qlqqrl~~~ 120 (299)
.|+..+..|..|+++++.++
T Consensus 202 ~l~~~l~~~~~~~~qq~e~f 221 (273)
T 3s84_A 202 GLQKSLAELGGHLDQQVEEF 221 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 34445555566666666543
No 408
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=26.10 E-value=94 Score=23.37 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 022288 59 DTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLRE 97 (299)
Q Consensus 59 DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRd 97 (299)
+-+..|+.=...+.+|+.++..-.+++.+|+.+.+.+++
T Consensus 15 ~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 15 DFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555555555555555443
No 409
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=25.96 E-value=68 Score=30.08 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022288 82 TEESRELTQEKNDLREEKLSLRSEIENLNI 111 (299)
Q Consensus 82 ~eE~~eLk~EkNELRdEns~LksE~e~L~~ 111 (299)
...++.|..+.++|+++...|+..+..+..
T Consensus 27 ~~~I~~Lq~~le~L~~KI~~LE~~v~~q~~ 56 (323)
T 1lwu_B 27 AGSLRSMKSVLEHLRAKMQRMEEAIKTQKE 56 (323)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555666666666666777666665553
No 410
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=25.83 E-value=2.1e+02 Score=24.02 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=0.0
Q ss_pred CCCCCCcCCCCCCCCccCCCCC
Q 022288 163 GNQNPGVIPNPCSTFVPYMAPN 184 (299)
Q Consensus 163 ~~q~~~~~~~p~~~~~py~~p~ 184 (299)
||-.-|---||-..+-||-.|.
T Consensus 102 Gne~lgsS~np~al~WP~~~p~ 123 (129)
T 3f6n_A 102 GNEELGSSGNPKALTWPFKAPA 123 (129)
T ss_dssp ----------------------
T ss_pred CchhhccCCCCCCCcCCCCCCC
Confidence 4444455567777777776663
No 411
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=25.82 E-value=1.5e+02 Score=22.55 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 022288 60 TVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEK 99 (299)
Q Consensus 60 AI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEn 99 (299)
+..-|.+||.+|..+..++-.|-.+--.+..+.-+++.++
T Consensus 10 ~~~~L~~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~~~ 49 (90)
T 2vkl_A 10 PVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMAS 49 (90)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3344888999999999888888888777777777777554
No 412
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=25.75 E-value=1.8e+02 Score=20.50 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022288 60 TVQLLKDLTSQVEKLKTEH 78 (299)
Q Consensus 60 AI~ylKdLr~qVq~Lk~en 78 (299)
|=+-|..|+.+|.+|+++.
T Consensus 10 AERsV~KLek~ID~LEdeL 28 (52)
T 2z5i_A 10 LENEVARLKKLVDDLEDEL 28 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555443
No 413
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=25.72 E-value=38 Score=21.55 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=7.1
Q ss_pred HHHHHhhhHHHHHHHHH
Q 022288 74 LKTEHAALTEESRELTQ 90 (299)
Q Consensus 74 Lk~en~~L~eE~~eLk~ 90 (299)
|+-+|+.|+..+..|++
T Consensus 5 lefendaleqkiaalkq 21 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQ 21 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHH
Confidence 33344444444444433
No 414
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=25.67 E-value=2.1e+02 Score=24.85 Aligned_cols=9 Identities=22% Similarity=0.375 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 022288 105 EIENLNIQY 113 (299)
Q Consensus 105 E~e~L~~ql 113 (299)
+...|+.++
T Consensus 101 ~~~~L~~~~ 109 (192)
T 2p22_C 101 NARILESKY 109 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 415
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=25.47 E-value=2.1e+02 Score=25.17 Aligned_cols=37 Identities=19% Similarity=0.463 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLR 96 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELR 96 (299)
+..+|+.|+.++.++..|+++. .+|+..|.++.+.++
T Consensus 28 ~~~~l~~L~~iQ~e~~~l~~e~---~~ev~~lE~ky~~~~ 64 (225)
T 2e50_A 28 QQEAIEHIDEVQNEIDRLNEQA---SEEILKVEQKYNKLR 64 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 6777888888888888776543 456666666666655
No 416
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=24.97 E-value=1.3e+02 Score=24.66 Aligned_cols=42 Identities=14% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEI 106 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~ 106 (299)
.+-.+++.+|+.+|.....+......|+..|......+-..+
T Consensus 88 e~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~i 129 (132)
T 1ykh_B 88 EEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIEDF 129 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 417
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=24.95 E-value=1.2e+02 Score=27.69 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHcCCCc
Q 022288 109 LNIQYQQRVRAMVPWA 124 (299)
Q Consensus 109 L~~qlqqrl~~~~pw~ 124 (299)
+++-++.=++.++|-.
T Consensus 71 aenlf~eII~EnfPnL 86 (233)
T 2yko_A 71 LENTLQDIIQENFPNL 86 (233)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCCCC
Confidence 5666677777777643
No 418
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=24.76 E-value=2.7e+02 Score=22.24 Aligned_cols=28 Identities=21% Similarity=0.192 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022288 67 LTSQVEKLKTEHAALTEESRELTQEKND 94 (299)
Q Consensus 67 Lr~qVq~Lk~en~~L~eE~~eLk~EkNE 94 (299)
|.++.-+.+.+++.|++++.+|+....+
T Consensus 9 ~~~~~~~~e~e~~~l~~~~~el~~~l~~ 36 (125)
T 1joc_A 9 LLERCLKGEGEIEKLQTKVLELQRKLDN 36 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3444444555556666666666555543
No 419
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=24.58 E-value=4.5e+02 Score=26.41 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEES 85 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~ 85 (299)
|.+++++-.+++++|+.+..+.
T Consensus 36 ~ae~~a~n~~i~aeNeaikkrN 57 (497)
T 3iox_A 36 VAANNAANAALTAENTAIKKRN 57 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHH
Confidence 4444444444444444444333
No 420
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=24.52 E-value=1.2e+02 Score=25.43 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 022288 65 KDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEI 106 (299)
Q Consensus 65 KdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~ 106 (299)
.+-.+++.+|+.++.....+......|+.+|......+-.++
T Consensus 88 eeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~i 129 (151)
T 1yke_B 88 EEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDF 129 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 421
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=24.51 E-value=3.3e+02 Score=23.29 Aligned_cols=60 Identities=12% Similarity=0.250 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEK----NDLREEKLSLRSEIENLNIQYQQR 116 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~Ek----NELRdEns~LksE~e~L~~qlqqr 116 (299)
+...+..++.|+.+|..-+.....+.+..+.|-... .++++....|...-..|......|
T Consensus 254 ~e~ll~~h~~l~~ei~~~~~~~~~l~~~g~~Ll~~~~~~~~~i~~~l~~L~~~w~~l~~~w~~R 317 (323)
T 3edv_A 254 VELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQLTEKRKEMIDKWEDR 317 (323)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666555555555554444443322 234444444444444444444443
No 422
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=24.45 E-value=2.9e+02 Score=22.56 Aligned_cols=26 Identities=8% Similarity=0.317 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 85 SRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 85 ~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
.+.+.....+|-..+--|++|+.+|.
T Consensus 78 MKq~aaqsaaLlsk~yh~ene~ar~k 103 (114)
T 2xzr_A 78 MKQIEDKIEEILSKIYHIENEIARIK 103 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33333444445555555555555554
No 423
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=24.14 E-value=2.9e+02 Score=22.48 Aligned_cols=52 Identities=8% Similarity=0.110 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHH----------HHHHHHHHHhhhHHHHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQ----------EKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~----------EkNELRdEns~LksE~e~L~~ql 113 (299)
..-++|+..++.++..++.|.+-+..+.. |...-|.-...++.++.+++.++
T Consensus 67 ~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 67 WTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455666666666666666655554432 12222333345666666665443
No 424
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=24.14 E-value=86 Score=24.95 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=5.1
Q ss_pred hhHHHHHHHHHHH
Q 022288 101 SLRSEIENLNIQY 113 (299)
Q Consensus 101 ~LksE~e~L~~ql 113 (299)
.|+.++++|+..+
T Consensus 27 ~l~~~l~~~~~~l 39 (182)
T 3kqg_A 27 ALQGSLENMSKLL 39 (182)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444443333
No 425
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=24.08 E-value=38 Score=31.83 Aligned_cols=35 Identities=17% Similarity=-0.003 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 79 AALTEESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 79 ~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
..|+..+-.+..+...|+.....|+++|.+|+.++
T Consensus 7 ~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i 41 (319)
T 1fzc_C 7 MKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKV 41 (319)
T ss_dssp ---CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445544444555555544433
No 426
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=24.04 E-value=1.3e+02 Score=28.59 Aligned_cols=58 Identities=14% Similarity=0.306 Sum_probs=38.6
Q ss_pred ChhhhHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 52 DKATILAD---TVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 52 DKASIL~D---AI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
.+..|+.. -...|++|+...++|++++....++..++..+.|-|+=|.-.|+...++.
T Consensus 199 e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~ 259 (373)
T 3hhm_B 199 EIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQY 259 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 44445442 23445566677778888888777888888888888887776666655543
No 427
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=24.00 E-value=1.6e+02 Score=24.92 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=6.0
Q ss_pred HHHHHHHHhhhc
Q 022288 32 RLNEHFTELGNA 43 (299)
Q Consensus 32 KLNErF~eLrsl 43 (299)
-|+.++..|+.-
T Consensus 15 dl~kri~qL~~r 26 (154)
T 3kdq_A 15 EAQRRYSELNQL 26 (154)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345555555543
No 428
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=23.96 E-value=87 Score=20.88 Aligned_cols=29 Identities=28% Similarity=0.508 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 81 LTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 81 L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
|+++-.-|-.|+..|+..+..|+.-++.|
T Consensus 5 lq~dE~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 5 VQAEEQKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455556666666666666666555543
No 429
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=23.87 E-value=4.2e+02 Score=24.25 Aligned_cols=63 Identities=17% Similarity=0.350 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTE-ESRELTQEKNDLREEK-LSLRSEIENLNIQYQQRVRA 119 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~e-E~~eLk~EkNELRdEn-s~LksE~e~L~~qlqqrl~~ 119 (299)
+.+.+++++.|...-.+-++.+....+ -+..|..|.--|..+. +.......+|..++++.|+.
T Consensus 176 ike~veerkrl~~kQ~k~qEkL~~~h~e~le~l~~e~~k~~~~~~~~~q~~~~~l~~ei~e~~~~ 240 (251)
T 1jad_A 176 IQEVVQTIKLLTEKTARYQQKLEEKQAENLRAIQEKEGQLQQEAVAEYEEKLKTLTVEVQEMVKN 240 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 456677777777643333322222211 1222323333333222 13333444666666666654
No 430
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=23.81 E-value=1.6e+02 Score=24.20 Aligned_cols=87 Identities=18% Similarity=0.226 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCCCCCCCChhhhHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 022288 23 ADREKLRRDRLNEHFTELGNALDPDRPKNDKATILADTV---QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEK 99 (299)
Q Consensus 23 AerERrRRdKLNErF~eLrslLvP~~~K~DKASIL~DAI---~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEn 99 (299)
+..-+.|.+.||++...|..+ -..+...|.+|. +|.+++.+-..-|.+....|...+..--.....|....
T Consensus 76 ~~~i~~~~~~l~~~W~~L~~~------~~~R~~~L~~a~~~~~F~~~~~e~~~Wl~ek~~~l~~~~g~dl~~v~~l~~~h 149 (218)
T 3edu_A 76 AATIAEWKDGLNEMWADLLEL------IDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVH 149 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------CCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHH
Q 022288 100 LSLRSEIENLNIQYQQ 115 (299)
Q Consensus 100 s~LksE~e~L~~qlqq 115 (299)
..++.++..++.++++
T Consensus 150 ~~~e~dL~~~~~~v~~ 165 (218)
T 3edu_A 150 TAFERELHLLGVQVQQ 165 (218)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
No 431
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=23.57 E-value=1.5e+02 Score=29.40 Aligned_cols=10 Identities=20% Similarity=0.617 Sum_probs=5.0
Q ss_pred HHHHHHHHHH
Q 022288 57 LADTVQLLKD 66 (299)
Q Consensus 57 L~DAI~ylKd 66 (299)
|.+.|+.|+.
T Consensus 371 iD~vI~iIr~ 380 (470)
T 3ilw_A 371 LDEVIALIRA 380 (470)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4555555543
No 432
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer membrane; HET: UNL; 2.30A {Escherichia coli}
Probab=23.53 E-value=1.7e+02 Score=25.94 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH
Q 022288 89 TQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 89 k~EkNELRdEns~LksE~e~L~ 110 (299)
+.+..+.+.+....+.++....
T Consensus 201 ~~~~~~a~~~~~~a~~~~~~a~ 222 (446)
T 3pik_A 201 RGVIESTRSDIAKRQGELAQAN 222 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 3333344444444444444444
No 433
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=23.52 E-value=3.6e+02 Score=23.68 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 87 ELTQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 87 eLk~EkNELRdEns~LksE~e~L~~qlq 114 (299)
..+.+....+.+...++.++..++.++.
T Consensus 119 ~a~~~~~~a~a~~~~~~~~l~~~~~~l~ 146 (369)
T 4dk0_A 119 TAKATLNNAKAEMDVVQENIKQAEIEVN 146 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555544443
No 434
>4h62_K Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=23.50 E-value=44 Score=22.78 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhhhccCCCCCC
Q 022288 30 RDRLNEHFTELGNALDPDRPK 50 (299)
Q Consensus 30 RdKLNErF~eLrslLvP~~~K 50 (299)
-+++-|++.-|.++|+|..+|
T Consensus 16 tekmeeqldllsaildpsksk 36 (40)
T 4h62_K 16 TEKMEEQLDLLSAILDPSKSK 36 (40)
T ss_pred HHHHHHHHHHHHHHcCccccc
Confidence 456788999999999998755
No 435
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=23.12 E-value=2.2e+02 Score=25.34 Aligned_cols=34 Identities=12% Similarity=0.244 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022288 57 LADTVQLLKDLTSQVEKLKTEHAALTEESRELTQ 90 (299)
Q Consensus 57 L~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~ 90 (299)
+...-.-|.+|+.++++|++..-.+..+...++.
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~Rk 94 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRR 94 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666777777777666666666655544
No 436
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=23.05 E-value=3.3e+02 Score=22.70 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=23.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 74 LKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 74 Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlq 114 (299)
|++....|-+.+..|..|+-+|......-.-||..|+.++.
T Consensus 63 L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~ 103 (133)
T 1j1d_C 63 LQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIF 103 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHH
Confidence 33444445555556666666666666666667777764443
No 437
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=22.96 E-value=81 Score=20.44 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=7.5
Q ss_pred HHHHHHHHhhhHHHHHHH
Q 022288 71 VEKLKTEHAALTEESREL 88 (299)
Q Consensus 71 Vq~Lk~en~~L~eE~~eL 88 (299)
+..|+.+|..|...+++|
T Consensus 8 lasleaenkqlkakveel 25 (31)
T 1p9i_A 8 LASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 438
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=22.87 E-value=1.7e+02 Score=22.95 Aligned_cols=44 Identities=18% Similarity=0.235 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHH-------------HHHHHHHHHHHHHHHhhhHHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEE-------------SRELTQEKNDLREEKLSLRSEIE 107 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE-------------~~eLk~EkNELRdEns~LksE~e 107 (299)
-|+.|++++..|+.+...+..+ ++.| -+.||++|--+.|-.-+.
T Consensus 9 ~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~L-h~YNeiKD~gq~L~g~iA 65 (85)
T 3viq_B 9 RVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLL-HTYNEIRDIALGMIGKVA 65 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHH
Confidence 3556666666666655544332 2222 356666665555544333
No 439
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=22.83 E-value=3e+02 Score=27.96 Aligned_cols=7 Identities=43% Similarity=0.752 Sum_probs=2.7
Q ss_pred HHHHHhh
Q 022288 35 EHFTELG 41 (299)
Q Consensus 35 ErF~eLr 41 (299)
.++.+|+
T Consensus 19 ~~v~~l~ 25 (585)
T 1y1u_A 19 QRFEELR 25 (585)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 440
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=22.63 E-value=2.7e+02 Score=28.34 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
+.|.+-+.++..++..+..++..+..++.|.+...+.+..+..+++.+++++
T Consensus 356 QRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~ 407 (602)
T 1cii_A 356 QRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQL 407 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 441
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=22.62 E-value=2.2e+02 Score=28.59 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=10.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHH
Q 022288 73 KLKTEHAALTEESRELTQEKNDLRE 97 (299)
Q Consensus 73 ~Lk~en~~L~eE~~eLk~EkNELRd 97 (299)
+++.+.+.+..+...|+....+++.
T Consensus 363 ~~~~~l~~~~~~~~~l~~~~~~~~~ 387 (695)
T 2j69_A 363 ELKKRIDSVEPEFNKLTGIRDEFQK 387 (695)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333333
No 442
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=22.60 E-value=44 Score=25.67 Aligned_cols=36 Identities=6% Similarity=0.183 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREE 98 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdE 98 (299)
-|.+||.+|..+..++-.|-++--.+..+.-+++.+
T Consensus 9 ~L~~lR~~ID~iD~~il~LL~~R~~~~~~i~~~K~~ 44 (101)
T 3ret_A 9 GLADIREAIDRIDLDIVQALGRRMDYVKAASRFEAS 44 (101)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 478899999999999888888877777777777654
No 443
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=22.45 E-value=1.4e+02 Score=31.24 Aligned_cols=15 Identities=7% Similarity=-0.086 Sum_probs=7.8
Q ss_pred HhhhHHHHHHHHHHH
Q 022288 99 KLSLRSEIENLNIQY 113 (299)
Q Consensus 99 ns~LksE~e~L~~ql 113 (299)
...++.++++|+.++
T Consensus 844 ~~~~~~~~~~~~~~~ 858 (862)
T 1gax_A 844 LKENLEQAERIREAL 858 (862)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555666665333
No 444
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=22.31 E-value=1.5e+02 Score=30.98 Aligned_cols=13 Identities=8% Similarity=0.192 Sum_probs=6.5
Q ss_pred HHHHHHHHHhhhc
Q 022288 31 DRLNEHFTELGNA 43 (299)
Q Consensus 31 dKLNErF~eLrsl 43 (299)
+++.+++..|..+
T Consensus 341 ~k~~~r~hiLegl 353 (716)
T 1zvu_A 341 EKVLKRLHILEGL 353 (716)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhH
Confidence 3445555555554
No 445
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=22.07 E-value=3e+02 Score=21.87 Aligned_cols=23 Identities=9% Similarity=0.070 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 022288 59 DTVQLLKDLTSQVEKLKTEHAAL 81 (299)
Q Consensus 59 DAI~ylKdLr~qVq~Lk~en~~L 81 (299)
.+.+-.++|+.++.+|+.++..+
T Consensus 20 ~~a~~~~~lk~E~~~lk~E~~st 42 (93)
T 3sjb_C 20 ELSKKYLAKVKERHELKEFNNSI 42 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhHHHHHHHHHHHHHHHHHHhcc
Confidence 34556677777777777777544
No 446
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=22.05 E-value=2.7e+02 Score=25.72 Aligned_cols=79 Identities=16% Similarity=0.262 Sum_probs=47.7
Q ss_pred HHHHHHhhhccCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHH---HHHHHHhhhHHHHHHH
Q 022288 34 NEHFTELGNALDPDRPKNDKATILADTVQLLKDLTSQVEKLKTEH-AALTEESRELTQEKN---DLREEKLSLRSEIENL 109 (299)
Q Consensus 34 NErF~eLrslLvP~~~K~DKASIL~DAI~ylKdLr~qVq~Lk~en-~~L~eE~~eLk~EkN---ELRdEns~LksE~e~L 109 (299)
++.|..|+.. |...+|.++..-+.+.-.++-....-+ ..+...+++|....- .++.+...|...++++
T Consensus 19 ~~~fh~l~~~--------d~s~~~~~~~~q~~~~l~~~~~~~~~~~~~~~~~v~~l~~~y~~l~~~~~~~~~~~~~~~~~ 90 (267)
T 3htk_C 19 GKYFHNLHAR--------DLSNIYQQCYKQIDETINQLVDSTSPSTIGIEEQVADITSTYKLLSTYESESNSFDEHIKDL 90 (267)
T ss_dssp HHHHHHCCCC--------CCHHHHHHHHHHHHHHHHHHHHHCCCCSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcCchh--------hhHHHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888754 677778777665555444443322111 124566666665444 4466667788888888
Q ss_pred HHHHHHHHHHc
Q 022288 110 NIQYQQRVRAM 120 (299)
Q Consensus 110 ~~qlqqrl~~~ 120 (299)
.++|.+.-...
T Consensus 91 K~~yk~~~d~~ 101 (267)
T 3htk_C 91 KKNFKQSSDAC 101 (267)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHhhccC
Confidence 88887765544
No 447
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=21.94 E-value=1.8e+02 Score=22.30 Aligned_cols=37 Identities=22% Similarity=0.357 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEK 99 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEn 99 (299)
-|.+||.+|..+..++-.|-.+--.+..+.-+++.+.
T Consensus 18 ~L~~lR~~ID~ID~~Ll~LL~~R~~~~~~Ig~~K~~~ 54 (91)
T 1ybz_A 18 TLKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKKEL 54 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3788999999998888888777777777777776544
No 448
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=21.93 E-value=1.7e+02 Score=22.39 Aligned_cols=35 Identities=29% Similarity=0.298 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHAALTEESRELTQEKNDLREE 98 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdE 98 (299)
|.+||.+|..+..++-.|-++--.+..+.-+++.+
T Consensus 7 L~~lR~~ID~iD~~L~~LL~~R~~~~~~v~~~K~~ 41 (109)
T 1ecm_A 7 LLALREKISALDEKLLALLAERRELAVEVGKAKLL 41 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888877777666666666655543
No 449
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=21.59 E-value=1.1e+02 Score=24.21 Aligned_cols=10 Identities=40% Similarity=0.693 Sum_probs=0.4
Q ss_pred HHHHHHHHHH
Q 022288 67 LTSQVEKLKT 76 (299)
Q Consensus 67 Lr~qVq~Lk~ 76 (299)
|.++++.|+.
T Consensus 4 l~~~~~~l~~ 13 (182)
T 3kqg_A 4 LNAQIPELKS 13 (182)
T ss_dssp ---------C
T ss_pred hhhhHHHHHH
Confidence 3344444443
No 450
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=21.53 E-value=22 Score=35.34 Aligned_cols=7 Identities=0% Similarity=0.358 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 022288 33 LNEHFTE 39 (299)
Q Consensus 33 LNErF~e 39 (299)
|-+++..
T Consensus 340 ~~~~~~~ 346 (575)
T 2i1j_A 340 YQDRLRQ 346 (575)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 451
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=21.49 E-value=2.3e+02 Score=26.34 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESRELTQ 90 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eLk~ 90 (299)
..|..|+..+...+.....+-+++...+.
T Consensus 123 ~~L~~L~~~i~~~q~~~~~~~~~L~~F~~ 151 (346)
T 2nrj_A 123 EGITDLRGEIQQNQKYAQQLIEELTKLRD 151 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666555555544444444333
No 452
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=21.48 E-value=3.5e+02 Score=22.48 Aligned_cols=14 Identities=7% Similarity=0.332 Sum_probs=7.5
Q ss_pred HHHHHHHHHhhhcc
Q 022288 31 DRLNEHFTELGNAL 44 (299)
Q Consensus 31 dKLNErF~eLrslL 44 (299)
.+|+.-+.++|.-|
T Consensus 85 ~~l~kdlee~r~~l 98 (185)
T 3r2p_A 85 QEMSKDLEEVKAKV 98 (185)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHH
Confidence 34555556555543
No 453
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=21.44 E-value=2.9e+02 Score=23.84 Aligned_cols=11 Identities=18% Similarity=0.305 Sum_probs=5.9
Q ss_pred HHHHHHHHHhh
Q 022288 31 DRLNEHFTELG 41 (299)
Q Consensus 31 dKLNErF~eLr 41 (299)
.+||+-+..|+
T Consensus 94 ~~In~AY~vLs 104 (207)
T 3bvo_A 94 TLVNDAYKTLL 104 (207)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHC
Confidence 34555555554
No 454
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=21.15 E-value=3.4e+02 Score=22.59 Aligned_cols=19 Identities=0% Similarity=0.221 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 022288 100 LSLRSEIENLNIQYQQRVR 118 (299)
Q Consensus 100 s~LksE~e~L~~qlqqrl~ 118 (299)
..++++++.+..+++....
T Consensus 74 ~~~~a~l~~v~~~lqt~~~ 92 (179)
T 2gd5_A 74 YASKAHMNSVLMGMKNQLA 92 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666666666665554
No 455
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=21.12 E-value=1.5e+02 Score=30.94 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=18.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 71 VEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 71 Vq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
+.+|++|.+.|.+++.+|+.=.+.-..-+..++.|+..+..+|
T Consensus 404 ~~kl~~E~~eL~~~i~~l~~iL~~~~~l~~~i~~EL~~i~~ky 446 (716)
T 1zvu_A 404 EMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 446 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444443333332223445555555555444
No 456
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=21.10 E-value=97 Score=22.39 Aligned_cols=20 Identities=40% Similarity=0.441 Sum_probs=9.7
Q ss_pred HHhhhHHHHHHHHHHHHHHH
Q 022288 98 EKLSLRSEIENLNIQYQQRV 117 (299)
Q Consensus 98 Ens~LksE~e~L~~qlqqrl 117 (299)
|..+|..||++|+.|-.+.+
T Consensus 7 EILRLErEIE~Lqrqke~~~ 26 (51)
T 2lw9_A 7 EILRLEKEIEDLQRMKEQQE 26 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554444433
No 457
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=21.07 E-value=1.6e+02 Score=29.53 Aligned_cols=9 Identities=22% Similarity=0.685 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q 022288 57 LADTVQLLK 65 (299)
Q Consensus 57 L~DAI~ylK 65 (299)
+.+.|+.|+
T Consensus 409 id~vI~iIr 417 (514)
T 2inr_A 409 LDKVIELIR 417 (514)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555443
No 458
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=20.98 E-value=2.2e+02 Score=19.96 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Q 022288 69 SQVEKLKTEHAALTEESRELTQE 91 (299)
Q Consensus 69 ~qVq~Lk~en~~L~eE~~eLk~E 91 (299)
.+++--+..+..|+.+++.|..+
T Consensus 5 ~~aefAERsV~KLek~ID~LEde 27 (52)
T 2z5i_A 5 SKNYHLENEVARLKKLVDDLEDE 27 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555433
No 459
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=20.96 E-value=3.9e+02 Score=22.79 Aligned_cols=8 Identities=25% Similarity=0.642 Sum_probs=3.3
Q ss_pred CCccCCCC
Q 022288 176 TFVPYMAP 183 (299)
Q Consensus 176 ~~~py~~p 183 (299)
.|.||..+
T Consensus 281 ~Fe~~~~~ 288 (301)
T 2efk_A 281 EFEDFSQP 288 (301)
T ss_dssp CCCCCC--
T ss_pred CcccCCCc
Confidence 45555544
No 460
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=20.92 E-value=1.5e+02 Score=25.29 Aligned_cols=51 Identities=24% Similarity=0.364 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022288 58 ADTVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLN 110 (299)
Q Consensus 58 ~DAI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~ 110 (299)
..-..+|.+|..+++.|++++-. ...+..-.+...||.+...|+.-+.-+.
T Consensus 182 d~y~~~l~~i~~~id~lE~~v~~--~~~~~~l~~l~~lrr~l~~lrr~l~p~~ 232 (269)
T 2bbh_A 182 DDYFVLLEKIDDEIDVLEEEVLE--RPEKETVQRTHQLKRNLVELRKTIWPLR 232 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677777777777765321 1112222334444555544444444443
No 461
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=20.87 E-value=3e+02 Score=21.40 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAALTEESRELTQE 91 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L~eE~~eLk~E 91 (299)
-|++|+.+|.+|+..-.....++++|..+
T Consensus 16 di~eLkkevkKL~~~A~q~kmdLHDLaEd 44 (81)
T 3csx_A 16 AVADLKKKVRKLNSKAGQMKMDLHDLAEG 44 (81)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45667777777776666666666666543
No 462
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=20.85 E-value=3.3e+02 Score=23.43 Aligned_cols=47 Identities=11% Similarity=-0.016 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022288 67 LTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQY 113 (299)
Q Consensus 67 Lr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~ql 113 (299)
...++.++......-+..+++|.....+|..+...|-.+|-.|...+
T Consensus 38 ~~~qi~en~~~iakNqadI~~L~~dI~dLd~~v~l~~RdIgsL~ddV 84 (157)
T 2qih_A 38 AKAQANENKDGIAKNQADIQLHDKKITNLGILHSMVARAVGNNTQGV 84 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhhcchhhHH
No 463
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=20.78 E-value=1.5e+02 Score=24.76 Aligned_cols=44 Identities=27% Similarity=0.422 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHhhhHHHH
Q 022288 63 LLKDLTSQVEKLKTEHAAL-----TEESRELTQEKNDLREEKLSLRSEI 106 (299)
Q Consensus 63 ylKdLr~qVq~Lk~en~~L-----~eE~~eLk~EkNELRdEns~LksE~ 106 (299)
-|+.|-.++..++...+.+ .+-+..++.|++.|..|..+|+...
T Consensus 11 Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q 59 (123)
T 2lf0_A 11 EIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVH 59 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666555444332 2233444444444444444444433
No 464
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=20.72 E-value=2.5e+02 Score=20.37 Aligned_cols=37 Identities=22% Similarity=0.171 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022288 60 TVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLR 96 (299)
Q Consensus 60 AI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELR 96 (299)
.+..|+.+..+.+.|..++......++.|......|-
T Consensus 34 d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~ 70 (118)
T 3uul_A 34 DVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLM 70 (118)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666777777777777777777777666663
No 465
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=20.68 E-value=4.3e+02 Score=23.14 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=23.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022288 74 LKTEHAALTEESRELTQEKNDLREEKLSLRSEIENLNIQYQ 114 (299)
Q Consensus 74 Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L~~qlq 114 (299)
|++....|-+.+..|..|+-+|......-.-||..|..++.
T Consensus 63 L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~ 103 (180)
T 1j1e_C 63 LQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIF 103 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHH
Confidence 33444445555555666666666665666666666664443
No 466
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=20.63 E-value=3.5e+02 Score=22.04 Aligned_cols=10 Identities=30% Similarity=0.312 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 022288 66 DLTSQVEKLK 75 (299)
Q Consensus 66 dLr~qVq~Lk 75 (299)
+|++++.++.
T Consensus 17 ql~~qL~k~~ 26 (112)
T 1x79_B 17 QANDQLEKTM 26 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 467
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=20.55 E-value=1.6e+02 Score=23.41 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=5.7
Q ss_pred HHHHHHHHhhhHHH
Q 022288 71 VEKLKTEHAALTEE 84 (299)
Q Consensus 71 Vq~Lk~en~~L~eE 84 (299)
+..|+.++..|..+
T Consensus 8 ~~~Lk~El~~L~~~ 21 (106)
T 2aze_B 8 LEGLTQDLRQLQES 21 (106)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444443333
No 468
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=20.45 E-value=3.9e+02 Score=22.60 Aligned_cols=27 Identities=11% Similarity=0.314 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 62 QLLKDLTSQVEKLKTEHAALTEESREL 88 (299)
Q Consensus 62 ~ylKdLr~qVq~Lk~en~~L~eE~~eL 88 (299)
+.+++|.+++..++.++..|+.+.+.+
T Consensus 29 ~l~~~l~~~i~q~d~elqQLefq~kr~ 55 (150)
T 4dci_A 29 EAEREISNGIANADQQLAQLEQEGQTV 55 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777776666544
No 469
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=20.36 E-value=2.4e+02 Score=21.59 Aligned_cols=50 Identities=18% Similarity=0.323 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022288 60 TVQLLKDLTSQVEKLKTEHAALTEESRELTQEKNDLREEKLSLRSEIENL 109 (299)
Q Consensus 60 AI~ylKdLr~qVq~Lk~en~~L~eE~~eLk~EkNELRdEns~LksE~e~L 109 (299)
|..-|+++-.+++.|...-.-+-..+..|.++--.|..+...++..++-+
T Consensus 19 a~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~ 68 (72)
T 2xu6_A 19 TMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777666666666666555545555545555444444
No 470
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=20.34 E-value=2.2e+02 Score=23.61 Aligned_cols=48 Identities=31% Similarity=0.283 Sum_probs=26.5
Q ss_pred HHHHHHHHhhhH-HHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHHHHHHHH
Q 022288 71 VEKLKTEHAALT-EESRELTQEKNDLRE-----EKLSLRSEIENLNIQYQQRVRA 119 (299)
Q Consensus 71 Vq~Lk~en~~L~-eE~~eLk~EkNELRd-----Ens~LksE~e~L~~qlqqrl~~ 119 (299)
.++|+++++.|. .+..++..+..+-|+ ||....+.++++ .+++.|++.
T Consensus 11 ~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q-~~~e~rI~~ 64 (158)
T 2p4v_A 11 YEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRL-REIDRRVRY 64 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHH-HHHHHHHHH
Confidence 456777776663 355555556666554 666555555543 244444443
No 471
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=20.32 E-value=3e+02 Score=24.25 Aligned_cols=14 Identities=7% Similarity=0.166 Sum_probs=5.7
Q ss_pred hhhHHHHHHHHHHH
Q 022288 100 LSLRSEIENLNIQY 113 (299)
Q Consensus 100 s~LksE~e~L~~ql 113 (299)
...++++..++.++
T Consensus 125 ~~a~a~~~~~~~~l 138 (369)
T 4dk0_A 125 NNAKAEMDVVQENI 138 (369)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 472
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=20.27 E-value=2.7e+02 Score=20.67 Aligned_cols=10 Identities=10% Similarity=0.441 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 022288 69 SQVEKLKTEH 78 (299)
Q Consensus 69 ~qVq~Lk~en 78 (299)
..+..|+..+
T Consensus 32 ~~l~~L~~~v 41 (103)
T 4i0x_B 32 ENLDQLESRA 41 (103)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 473
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=20.26 E-value=4.3e+02 Score=22.98 Aligned_cols=11 Identities=18% Similarity=0.431 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 022288 103 RSEIENLNIQY 113 (299)
Q Consensus 103 ksE~e~L~~ql 113 (299)
+.++..++.++
T Consensus 127 ~a~l~~~~a~l 137 (341)
T 3fpp_A 127 QAQIGTIDAQI 137 (341)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 474
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=20.10 E-value=3.2e+02 Score=21.45 Aligned_cols=36 Identities=11% Similarity=0.386 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHH
Q 022288 64 LKDLTSQVEKLKTEHA--------ALTEESRELTQEKNDLREEK 99 (299)
Q Consensus 64 lKdLr~qVq~Lk~en~--------~L~eE~~eLk~EkNELRdEn 99 (299)
|.+||.+|.++..++- .|-.+--.+..+.-+++.++
T Consensus 5 L~~lR~~ID~ID~~il~~~~~~~~~Ll~eR~~l~~~Va~~K~~~ 48 (104)
T 2gtv_X 5 LAEIRKKIDEIDNKILKARWPWAEKLIAERNSLAKDVAEIKNQL 48 (104)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHC
Confidence 6788888888888888 77777777777777766554
Done!