BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022289
         (299 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1RGO|A Chain A, Structural Basis For Recognition Of The Mrna Class Ii Au-
           Rich Element By The Tandem Zinc Finger Domain Of Tis11d
          Length = 70

 Score = 90.9 bits (224), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 50/67 (74%)

Query: 225 WKTELCNKWQETGSCPYGDYCQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCH 284
           +KTELC  ++E+G+C YG+ CQFAH F ELR + RHPKYKTE+CR   + G CPYG RCH
Sbjct: 4   YKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 63

Query: 285 FRHSLTE 291
           F H+  E
Sbjct: 64  FIHNADE 70



 Score = 33.9 bits (76), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 262 KYKTEVCRMVLSGGICPYGHRCHFRHSLTE 291
           +YKTE+CR     G C YG +C F H   E
Sbjct: 3   RYKTELCRPFEESGTCKYGEKCQFAHGFHE 32


>pdb|1M9O|A Chain A, Nmr Structure Of The First Zinc Binding Domain Of
           Nup475TTPTIS11
          Length = 77

 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/67 (58%), Positives = 44/67 (65%)

Query: 225 WKTELCNKWQETGSCPYGDYCQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCH 284
           +KTELC  + E+G C YG  CQFAH   ELR   RHPKYKTE+C      G CPYG RCH
Sbjct: 10  YKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCH 69

Query: 285 FRHSLTE 291
           F H+ TE
Sbjct: 70  FIHNPTE 76



 Score = 35.0 bits (79), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 262 KYKTEVCRMVLSGGICPYGHRCHFRHSLTE 291
           +YKTE+CR     G C YG +C F H L E
Sbjct: 9   RYKTELCRTYSESGRCRYGAKCQFAHGLGE 38


>pdb|2CQE|A Chain A, Solution Structure Of The Zinc-Finger Domain In Kiaa1064
           Protein
          Length = 98

 Score = 28.1 bits (61), Expect = 6.6,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 230 CNKWQETGSCPYGDYCQFAHD 250
           C  +  TG+C  GD C F+HD
Sbjct: 39  CKLYHTTGNCINGDDCMFSHD 59


>pdb|2D9M|A Chain A, Solution Structure Of Ccch Type Zinc-Finger Domain 3 In
           Zinc Finger Ccch-Type Domain Containing 7a
          Length = 69

 Score = 27.3 bits (59), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 229 LCNKWQETGSCPYGDYCQFAHDFTEL 254
           +C+++   G+CP G+ C+FAH   EL
Sbjct: 22  ICDRYM-NGTCPEGNSCKFAHGNAEL 46


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,131,435
Number of Sequences: 62578
Number of extensions: 233378
Number of successful extensions: 375
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 365
Number of HSP's gapped (non-prelim): 11
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)