Query 022289
Match_columns 299
No_of_seqs 168 out of 1148
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 02:23:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022289.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022289hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1677 CCCH-type Zn-finger pr 99.5 5.1E-15 1.1E-19 138.6 4.4 74 222-295 127-207 (332)
2 COG5063 CTH1 CCCH-type Zn-fing 98.9 3.9E-10 8.5E-15 108.0 3.1 75 218-292 219-301 (351)
3 KOG2333 Uncharacterized conser 98.8 2.4E-09 5.2E-14 108.0 1.9 67 225-293 74-142 (614)
4 COG5063 CTH1 CCCH-type Zn-fing 98.6 2.1E-08 4.6E-13 96.3 3.4 70 224-293 271-342 (351)
5 PF00642 zf-CCCH: Zinc finger 98.5 2.5E-08 5.4E-13 63.7 1.0 27 225-251 1-27 (27)
6 KOG1595 CCCH-type Zn-finger pr 98.5 4E-08 8.6E-13 99.6 2.0 66 224-297 233-299 (528)
7 PF00642 zf-CCCH: Zinc finger 98.2 2.3E-07 4.9E-12 59.2 -0.3 27 263-289 1-27 (27)
8 KOG1040 Polyadenylation factor 98.2 6.3E-07 1.4E-11 86.7 2.1 57 223-289 73-129 (325)
9 KOG1677 CCCH-type Zn-finger pr 98.2 1.4E-06 3E-11 82.0 4.0 45 217-261 167-211 (332)
10 smart00356 ZnF_C3H1 zinc finge 98.0 3.5E-06 7.5E-11 52.1 1.9 25 225-250 2-26 (27)
11 KOG2494 C3H1-type Zn-finger pr 97.9 4.9E-06 1.1E-10 80.6 1.4 65 222-293 32-97 (331)
12 smart00356 ZnF_C3H1 zinc finge 97.7 2E-05 4.3E-10 48.7 2.1 26 263-289 2-27 (27)
13 KOG1763 Uncharacterized conser 97.7 6.3E-06 1.4E-10 79.3 -0.3 70 223-293 88-194 (343)
14 KOG1595 CCCH-type Zn-finger pr 97.7 2.6E-05 5.7E-10 79.5 3.6 65 224-293 198-263 (528)
15 COG5252 Uncharacterized conser 97.1 0.00017 3.6E-09 68.1 0.7 67 224-291 82-177 (299)
16 KOG1492 C3H1-type Zn-finger pr 96.9 0.00049 1.1E-08 65.1 2.0 119 161-288 174-311 (377)
17 COG5084 YTH1 Cleavage and poly 96.7 0.0016 3.6E-08 62.4 3.8 58 224-289 101-158 (285)
18 KOG1492 C3H1-type Zn-finger pr 96.1 0.003 6.5E-08 59.8 2.0 66 225-292 204-286 (377)
19 KOG2185 Predicted RNA-processi 96.0 0.0033 7.2E-08 63.2 1.7 25 265-290 140-164 (486)
20 COG5152 Uncharacterized conser 95.7 0.0036 7.8E-08 58.1 0.7 56 200-255 114-169 (259)
21 KOG1040 Polyadenylation factor 95.6 0.0057 1.2E-07 59.7 1.7 69 224-293 102-186 (325)
22 KOG2185 Predicted RNA-processi 95.3 0.0069 1.5E-07 60.9 1.3 40 213-253 126-165 (486)
23 PF14608 zf-CCCH_2: Zinc finge 94.4 0.021 4.5E-07 34.0 1.2 11 239-249 8-18 (19)
24 COG5152 Uncharacterized conser 94.4 0.014 3.1E-07 54.3 0.6 27 265-291 141-167 (259)
25 PF14608 zf-CCCH_2: Zinc finge 94.3 0.029 6.3E-07 33.4 1.6 19 267-288 1-19 (19)
26 COG5084 YTH1 Cleavage and poly 93.9 0.043 9.3E-07 52.9 2.9 58 226-292 133-192 (285)
27 KOG4791 Uncharacterized conser 91.1 0.1 2.2E-06 53.9 1.4 57 228-294 33-89 (667)
28 KOG4791 Uncharacterized conser 90.6 0.067 1.5E-06 55.2 -0.4 55 228-293 4-58 (667)
29 PF07407 Seadorna_VP6: Seadorn 90.3 0.23 5E-06 49.3 3.0 31 103-133 30-60 (420)
30 KOG1813 Predicted E3 ubiquitin 90.2 0.092 2E-06 51.1 0.2 32 224-255 183-214 (313)
31 KOG1813 Predicted E3 ubiquitin 89.2 0.11 2.4E-06 50.6 -0.1 27 265-291 186-212 (313)
32 KOG2494 C3H1-type Zn-finger pr 86.0 0.27 5.8E-06 48.4 0.5 26 265-291 37-63 (331)
33 PF14775 NYD-SP28_assoc: Sperm 85.8 1.4 3.1E-05 33.2 4.2 32 88-119 23-54 (60)
34 PRK13169 DNA replication intia 85.3 4.3 9.2E-05 34.3 7.2 36 97-132 21-56 (110)
35 KOG1039 Predicted E3 ubiquitin 84.9 0.34 7.4E-06 47.9 0.6 24 228-252 9-32 (344)
36 PRK00888 ftsB cell division pr 83.9 2.2 4.8E-05 35.3 4.9 36 98-133 27-62 (105)
37 PF06156 DUF972: Protein of un 83.1 6.6 0.00014 32.8 7.4 36 98-133 22-57 (107)
38 KOG2202 U2 snRNP splicing fact 82.1 0.59 1.3E-05 44.7 0.9 27 263-290 150-176 (260)
39 KOG3650 Predicted coiled-coil 82.0 5.7 0.00012 33.7 6.6 52 75-133 54-105 (120)
40 KOG1763 Uncharacterized conser 80.1 0.45 9.7E-06 46.6 -0.6 29 264-293 91-119 (343)
41 PF15136 UPF0449: Uncharacteri 79.5 5.4 0.00012 33.2 5.6 66 43-130 31-96 (97)
42 COG4026 Uncharacterized protei 78.1 6.9 0.00015 37.5 6.5 51 83-133 127-177 (290)
43 PF07558 Shugoshin_N: Shugoshi 75.4 2.4 5.2E-05 30.4 2.2 41 81-121 4-44 (46)
44 PF10224 DUF2205: Predicted co 75.3 13 0.00029 29.8 6.6 41 93-133 25-65 (80)
45 KOG4343 bZIP transcription fac 74.4 15 0.00032 39.0 8.3 45 89-133 287-337 (655)
46 PF11418 Scaffolding_pro: Phi2 73.9 17 0.00036 30.1 6.9 46 87-132 29-74 (97)
47 PF04977 DivIC: Septum formati 69.8 11 0.00025 27.9 4.9 34 98-131 17-50 (80)
48 PRK09413 IS2 repressor TnpA; R 69.2 9.6 0.00021 31.5 4.7 40 99-138 72-111 (121)
49 KOG2202 U2 snRNP splicing fact 68.8 2.3 5E-05 40.8 1.1 37 214-251 139-175 (260)
50 PF06005 DUF904: Protein of un 68.1 12 0.00027 29.2 4.8 24 82-105 9-32 (72)
51 PF10650 zf-C3H1: Putative zin 65.3 3.6 7.7E-05 26.1 1.1 20 229-249 2-21 (23)
52 PHA00489 scaffolding protein 63.9 21 0.00045 29.8 5.5 42 87-128 30-71 (101)
53 TIGR02209 ftsL_broad cell divi 63.3 16 0.00035 27.9 4.7 34 100-133 26-59 (85)
54 PF06005 DUF904: Protein of un 58.1 65 0.0014 25.2 7.2 27 99-125 12-38 (72)
55 PF04849 HAP1_N: HAP1 N-termin 56.8 19 0.00042 35.4 5.0 36 78-113 270-305 (306)
56 PRK13922 rod shape-determining 56.6 63 0.0014 30.0 8.2 33 99-131 70-112 (276)
57 COG5252 Uncharacterized conser 56.5 2.7 5.8E-05 40.4 -0.9 30 264-294 84-113 (299)
58 PRK14127 cell division protein 56.0 43 0.00093 28.3 6.3 25 105-129 44-68 (109)
59 PRK13169 DNA replication intia 55.7 42 0.00091 28.3 6.2 44 88-131 5-48 (110)
60 smart00338 BRLZ basic region l 54.2 29 0.00064 25.6 4.6 33 99-131 27-59 (65)
61 TIGR00219 mreC rod shape-deter 53.0 43 0.00094 32.0 6.6 36 97-132 65-111 (283)
62 PF04859 DUF641: Plant protein 52.9 33 0.00073 29.8 5.3 46 83-128 82-131 (131)
63 PF06632 XRCC4: DNA double-str 52.3 43 0.00092 33.3 6.6 42 91-132 130-171 (342)
64 PRK14127 cell division protein 51.9 25 0.00053 29.7 4.2 35 100-134 32-66 (109)
65 PF06156 DUF972: Protein of un 51.3 55 0.0012 27.4 6.2 45 88-132 5-49 (107)
66 COG4467 Regulator of replicati 50.2 79 0.0017 27.1 6.9 29 102-130 26-54 (114)
67 PRK10884 SH3 domain-containing 46.5 1.1E+02 0.0023 28.4 7.8 20 110-129 137-156 (206)
68 TIGR00219 mreC rod shape-deter 46.2 48 0.001 31.7 5.7 43 87-129 48-90 (283)
69 PRK10722 hypothetical protein; 46.2 28 0.00061 33.4 4.1 36 97-132 167-203 (247)
70 PF05103 DivIVA: DivIVA protei 45.1 11 0.00023 30.8 1.1 34 99-132 26-59 (131)
71 PRK10884 SH3 domain-containing 44.8 1.2E+02 0.0027 27.9 8.0 30 102-131 122-151 (206)
72 KOG2333 Uncharacterized conser 44.2 9.6 0.00021 40.1 0.8 23 228-250 115-137 (614)
73 PF00170 bZIP_1: bZIP transcri 43.9 60 0.0013 23.9 4.8 24 106-129 34-57 (64)
74 KOG3702 Nuclear polyadenylated 43.8 23 0.0005 38.2 3.4 22 228-253 545-566 (681)
75 PHA03011 hypothetical protein; 41.3 96 0.0021 26.5 6.1 48 72-119 66-113 (120)
76 PF13815 Dzip-like_N: Iguana/D 40.7 1.6E+02 0.0035 24.4 7.5 52 77-131 61-113 (118)
77 KOG1039 Predicted E3 ubiquitin 39.5 21 0.00046 35.5 2.3 30 265-294 249-279 (344)
78 PF14197 Cep57_CLD_2: Centroso 39.0 98 0.0021 23.9 5.5 31 94-124 36-66 (69)
79 PF07716 bZIP_2: Basic region 38.5 62 0.0013 23.2 4.1 26 100-125 27-52 (54)
80 PRK13922 rod shape-determining 37.9 1.4E+02 0.0031 27.7 7.4 53 80-132 44-96 (276)
81 KOG0153 Predicted RNA-binding 36.5 18 0.00039 36.4 1.3 24 227-251 161-184 (377)
82 PF14197 Cep57_CLD_2: Centroso 35.6 2.1E+02 0.0045 22.2 7.2 22 107-128 42-63 (69)
83 TIGR03752 conj_TIGR03752 integ 35.3 49 0.0011 34.5 4.2 20 100-119 75-94 (472)
84 PF06472 ABC_membrane_2: ABC t 35.1 1E+02 0.0022 28.8 6.0 90 40-129 138-244 (281)
85 PF13942 Lipoprotein_20: YfhG 35.0 2E+02 0.0043 26.6 7.5 43 86-132 114-157 (179)
86 PF12709 Kinetocho_Slk19: Cent 34.8 83 0.0018 25.8 4.6 34 98-131 49-86 (87)
87 KOG3702 Nuclear polyadenylated 34.5 35 0.00075 36.9 3.1 16 238-253 587-607 (681)
88 KOG0153 Predicted RNA-binding 34.1 20 0.00044 36.1 1.2 16 43-58 17-32 (377)
89 PF10224 DUF2205: Predicted co 33.9 2.5E+02 0.0054 22.6 7.5 45 75-119 14-58 (80)
90 PF02970 TBCA: Tubulin binding 33.7 1.2E+02 0.0026 24.3 5.4 37 72-110 38-74 (90)
91 PLN03188 kinesin-12 family pro 33.6 1.2E+02 0.0026 35.4 7.1 53 79-131 1109-1192(1320)
92 PF14645 Chibby: Chibby family 33.5 52 0.0011 27.9 3.4 29 103-131 69-97 (116)
93 TIGR02894 DNA_bind_RsfA transc 33.2 1.6E+02 0.0034 26.7 6.6 28 105-132 104-131 (161)
94 COG2919 Septum formation initi 32.8 2.8E+02 0.0061 23.1 7.7 38 96-133 48-85 (117)
95 PF00170 bZIP_1: bZIP transcri 32.0 2.1E+02 0.0045 21.0 7.1 45 72-126 17-61 (64)
96 PF14775 NYD-SP28_assoc: Sperm 31.9 2.2E+02 0.0048 21.4 6.5 42 88-129 16-57 (60)
97 PF02183 HALZ: Homeobox associ 31.3 58 0.0013 23.3 2.9 25 108-132 15-39 (45)
98 TIGR02449 conserved hypothetic 31.1 2E+02 0.0044 22.3 6.0 37 89-125 5-41 (65)
99 COG3074 Uncharacterized protei 30.6 2.8E+02 0.006 22.3 6.7 52 84-135 25-76 (79)
100 smart00574 POX domain associat 30.6 2.1E+02 0.0046 25.4 6.8 39 72-110 72-110 (140)
101 PF06548 Kinesin-related: Kine 30.2 1.8E+02 0.0039 30.5 7.2 53 79-131 339-422 (488)
102 COG4467 Regulator of replicati 30.1 47 0.001 28.5 2.6 35 99-133 16-50 (114)
103 PF04999 FtsL: Cell division p 29.9 95 0.0021 24.4 4.2 31 101-131 38-68 (97)
104 PF10205 KLRAQ: Predicted coil 29.8 96 0.0021 26.1 4.4 35 98-132 33-67 (102)
105 PF12808 Mto2_bdg: Micro-tubul 29.8 52 0.0011 24.5 2.5 17 103-119 27-43 (52)
106 KOG4005 Transcription factor X 29.8 2E+02 0.0042 28.1 6.9 34 100-133 99-139 (292)
107 PRK15422 septal ring assembly 29.7 1.2E+02 0.0025 24.6 4.6 34 98-131 11-44 (79)
108 PRK10803 tol-pal system protei 29.3 1.4E+02 0.0031 28.1 6.0 33 101-133 57-89 (263)
109 COG4951 Uncharacterized protei 28.5 29 0.00063 34.3 1.2 18 99-116 2-19 (361)
110 PF10498 IFT57: Intra-flagella 27.5 2.9E+02 0.0063 27.6 8.0 64 78-141 267-330 (359)
111 KOG4304 Transcriptional repres 26.9 1.2E+02 0.0026 28.9 5.0 43 87-129 41-90 (250)
112 PF07412 Geminin: Geminin; In 26.8 2.8E+02 0.0061 25.9 7.3 56 71-133 112-170 (200)
113 PF11559 ADIP: Afadin- and alp 26.5 3.3E+02 0.0072 23.0 7.2 52 81-132 42-93 (151)
114 PF05377 FlaC_arch: Flagella a 25.1 1.8E+02 0.0038 22.1 4.6 31 99-129 8-38 (55)
115 KOG3119 Basic region leucine z 24.8 1E+02 0.0023 29.3 4.2 34 98-131 222-255 (269)
116 PRK14872 rod shape-determining 24.3 86 0.0019 31.3 3.6 29 104-132 56-84 (337)
117 PF09544 DUF2381: Protein of u 23.8 79 0.0017 30.5 3.2 29 92-120 128-156 (289)
118 PF04999 FtsL: Cell division p 23.3 2.1E+02 0.0046 22.4 5.1 37 95-131 39-77 (97)
119 PF08898 DUF1843: Domain of un 23.0 2.2E+02 0.0048 21.5 4.7 37 97-133 16-52 (53)
120 PF05769 DUF837: Protein of un 22.6 5.8E+02 0.013 23.1 8.4 29 105-133 70-98 (181)
121 TIGR03752 conj_TIGR03752 integ 22.2 2E+02 0.0044 30.1 5.9 60 74-133 70-144 (472)
122 PF07106 TBPIP: Tat binding pr 22.0 1.7E+02 0.0037 25.3 4.7 55 79-133 81-137 (169)
123 KOG4343 bZIP transcription fac 21.8 75 0.0016 34.0 2.8 30 90-119 300-330 (655)
124 PF13870 DUF4201: Domain of un 21.7 5.1E+02 0.011 22.5 7.7 59 73-131 80-138 (177)
125 PF13904 DUF4207: Domain of un 21.7 1E+02 0.0023 29.1 3.6 50 9-58 1-50 (264)
126 KOG4643 Uncharacterized coiled 21.6 3.4E+02 0.0074 31.4 7.8 57 77-133 502-558 (1195)
127 PF07438 DUF1514: Protein of u 21.6 99 0.0021 24.3 2.8 23 108-130 21-43 (66)
128 PF00038 Filament: Intermediat 21.3 5.5E+02 0.012 23.9 8.3 47 86-132 84-130 (312)
129 smart00338 BRLZ basic region l 21.0 2E+02 0.0044 21.0 4.3 30 99-128 34-63 (65)
130 PF04899 MbeD_MobD: MbeD/MobD 20.9 4.1E+02 0.009 20.8 8.1 27 107-133 37-63 (70)
131 TIGR02209 ftsL_broad cell divi 20.8 1.5E+02 0.0032 22.5 3.6 30 97-126 30-59 (85)
132 PF08172 CASP_C: CASP C termin 20.6 1.3E+02 0.0029 28.4 4.0 35 99-133 101-135 (248)
133 cd00890 Prefoldin Prefoldin is 20.5 3.5E+02 0.0076 21.7 6.0 39 79-117 4-42 (129)
134 PF07526 POX: Associated with 20.2 3E+02 0.0066 23.9 5.8 38 72-109 72-109 (140)
No 1
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=99.53 E-value=5.1e-15 Score=138.61 Aligned_cols=74 Identities=42% Similarity=0.907 Sum_probs=67.0
Q ss_pred CCCcccccCccccccCCcCc-cccccccccCCCcc------ccccCCCccccccccccCccccCCCCCCccCCCCCccCc
Q 022289 222 QGMWKTELCNKWQETGSCPY-GDYCQFAHDFTELR------PVIRHPKYKTEVCRMVLSGGICPYGHRCHFRHSLTEQER 294 (299)
Q Consensus 222 q~kyKTeLCr~F~~~G~C~y-GDrCrFAH~~~ELR------~~~~~p~~KT~~Ck~F~~~G~CpyG~rCrFaH~~~elrr 294 (299)
...+||.+|.+|...|.|+| |++|+|+|+.++++ ....+++|||++|..|.++|.|+||.+|+|.|+..+...
T Consensus 127 p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~~ 206 (332)
T KOG1677|consen 127 PERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDRA 206 (332)
T ss_pred cccccCCcceeeecCccccccCchhhhcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCccccc
Confidence 34899999999999999999 99999999999999 345688999999999999999999999999999887654
Q ss_pred C
Q 022289 295 I 295 (299)
Q Consensus 295 ~ 295 (299)
.
T Consensus 207 ~ 207 (332)
T KOG1677|consen 207 S 207 (332)
T ss_pred c
Confidence 4
No 2
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=98.94 E-value=3.9e-10 Score=107.97 Aligned_cols=75 Identities=40% Similarity=0.879 Sum_probs=67.5
Q ss_pred eeccCCCccc--ccCccccccCCcCc---ccccccc---ccCCCccccccCCCccccccccccCccccCCCCCCccCCCC
Q 022289 218 EVYNQGMWKT--ELCNKWQETGSCPY---GDYCQFA---HDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCHFRHSL 289 (299)
Q Consensus 218 ev~~q~kyKT--eLCr~F~~~G~C~y---GDrCrFA---H~~~ELR~~~~~p~~KT~~Ck~F~~~G~CpyG~rCrFaH~~ 289 (299)
...+...||+ .+|..|-..|.|++ |+.|+|+ ||..++.+......|+|++|..|...|+|+||.+|.|+|+.
T Consensus 219 ~e~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd 298 (351)
T COG5063 219 QEQNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGD 298 (351)
T ss_pred hhccchhhcCCHHHhhccCcCCCCccccccccccccccccccccccccccccccccCCccchhhcccCccccccccccCC
Confidence 4466678999 99999998999999 9999999 99999987767788999999999999999999999999997
Q ss_pred Ccc
Q 022289 290 TEQ 292 (299)
Q Consensus 290 ~el 292 (299)
...
T Consensus 299 ~~~ 301 (351)
T COG5063 299 DSD 301 (351)
T ss_pred hhh
Confidence 653
No 3
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=98.76 E-value=2.4e-09 Score=108.00 Aligned_cols=67 Identities=28% Similarity=0.653 Sum_probs=56.1
Q ss_pred cccccCcccccc--CCcCccccccccccCCCccccccCCCccccccccccCccccCCCCCCccCCCCCccC
Q 022289 225 WKTELCNKWQET--GSCPYGDYCQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCHFRHSLTEQE 293 (299)
Q Consensus 225 yKTeLCr~F~~~--G~C~yGDrCrFAH~~~ELR~~~~~p~~KT~~Ck~F~~~G~CpyG~rCrFaH~~~elr 293 (299)
.+..||+..... ..|.||++|+|.|+++.+.. .++.+...-|++|...|+|+||..|||+.+|.+..
T Consensus 74 ~~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLa--tK~~Dig~~Cp~f~s~G~Cp~G~~CRFl~aHld~~ 142 (614)
T KOG2333|consen 74 VQNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLA--TKAPDIGPSCPVFESLGFCPYGFKCRFLGAHLDIE 142 (614)
T ss_pred hhhccChHhhcCCCccCcccccccccccHHHHHh--ccCcccCCccceeeccccCCccceeehhhcccCcc
Confidence 368999999866 47999999999999988754 34445567899999999999999999998887644
No 4
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=98.61 E-value=2.1e-08 Score=96.27 Aligned_cols=70 Identities=27% Similarity=0.539 Sum_probs=63.9
Q ss_pred CcccccCccccccCCcCccccccccccCCCccccccCC--CccccccccccCccccCCCCCCccCCCCCccC
Q 022289 224 MWKTELCNKWQETGSCPYGDYCQFAHDFTELRPVIRHP--KYKTEVCRMVLSGGICPYGHRCHFRHSLTEQE 293 (299)
Q Consensus 224 kyKTeLCr~F~~~G~C~yGDrCrFAH~~~ELR~~~~~p--~~KT~~Ck~F~~~G~CpyG~rCrFaH~~~elr 293 (299)
.|+|+.|.+|...|.|+||.+|.|+|+..+...+.+++ .|+..+|+.+..+|.|++|.+|.+.|+...+.
T Consensus 271 ~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~~~~~~y~~~~crt~~~~g~~p~g~~~c~~~dkkn~~ 342 (351)
T COG5063 271 NFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEASLGYLDGPCRTRAKGGAFPSGGAVCKSFDKKNLD 342 (351)
T ss_pred ccccCCccchhhcccCccccccccccCChhhccccccccccccccccccccccCccCCCCchhhccccchhh
Confidence 79999999999999999999999999999888777777 78899999999999999999999999876544
No 5
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.53 E-value=2.5e-08 Score=63.66 Aligned_cols=27 Identities=52% Similarity=1.173 Sum_probs=19.8
Q ss_pred cccccCccccccCCcCccccccccccC
Q 022289 225 WKTELCNKWQETGSCPYGDYCQFAHDF 251 (299)
Q Consensus 225 yKTeLCr~F~~~G~C~yGDrCrFAH~~ 251 (299)
||+++|++|+..|.|++|++|+|+|+.
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred CccccChhhccCCccCCCCCcCccCCC
Confidence 578888888877888888888888863
No 6
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=98.50 E-value=4e-08 Score=99.57 Aligned_cols=66 Identities=36% Similarity=0.852 Sum_probs=56.7
Q ss_pred CcccccCccccccCCcCccccccccccCCCccccccCC-CccccccccccCccccCCCCCCccCCCCCccCcCCC
Q 022289 224 MWKTELCNKWQETGSCPYGDYCQFAHDFTELRPVIRHP-KYKTEVCRMVLSGGICPYGHRCHFRHSLTEQERIPV 297 (299)
Q Consensus 224 kyKTeLCr~F~~~G~C~yGDrCrFAH~~~ELR~~~~~p-~~KT~~Ck~F~~~G~CpyG~rCrFaH~~~elrr~~~ 297 (299)
.|....|+.|. +|.|+.||.|.|+|+..|.+- || .|||..|+. .|+|++ .-|.|+|...+++.++.
T Consensus 233 hYs~tpCPefr-kG~C~rGD~CEyaHgvfEcwL---HPa~YRT~~CkD---g~~C~R-rvCfFAH~~eqLR~l~~ 299 (528)
T KOG1595|consen 233 HYSSTPCPEFR-KGSCERGDSCEYAHGVFECWL---HPARYRTRKCKD---GGYCPR-RVCFFAHSPEQLRPLPP 299 (528)
T ss_pred cccCccCcccc-cCCCCCCCccccccceehhhc---CHHHhccccccC---CCCCcc-ceEeeecChHHhcccCC
Confidence 46778899887 799999999999999999874 55 699999984 489999 99999999999987763
No 7
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.21 E-value=2.3e-07 Score=59.22 Aligned_cols=27 Identities=44% Similarity=1.207 Sum_probs=21.6
Q ss_pred ccccccccccCccccCCCCCCccCCCC
Q 022289 263 YKTEVCRMVLSGGICPYGHRCHFRHSL 289 (299)
Q Consensus 263 ~KT~~Ck~F~~~G~CpyG~rCrFaH~~ 289 (299)
+++.+|++|...|.|++|++|+|+|+.
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred CccccChhhccCCccCCCCCcCccCCC
Confidence 478899999999999999999999973
No 8
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=98.19 E-value=6.3e-07 Score=86.74 Aligned_cols=57 Identities=30% Similarity=0.747 Sum_probs=47.6
Q ss_pred CCcccccCccccccCCcCccccccccccCCCccccccCCCccccccccccCccccCCCCCCccCCCC
Q 022289 223 GMWKTELCNKWQETGSCPYGDYCQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCHFRHSL 289 (299)
Q Consensus 223 ~kyKTeLCr~F~~~G~C~yGDrCrFAH~~~ELR~~~~~p~~KT~~Ck~F~~~G~CpyG~rCrFaH~~ 289 (299)
...++.+|++|+ .|.|.+||.|.|+|.+ ++. +...|.+|...|.|.+|..|.|.|+.
T Consensus 73 ~~~~~~vcK~~l-~glC~kgD~C~Flhe~-~~~--------k~rec~ff~~~g~c~~~~~c~y~h~d 129 (325)
T KOG1040|consen 73 DSRGKVVCKHWL-RGLCKKGDQCEFLHEY-DLT--------KMRECKFFSLFGECTNGKDCPYLHGD 129 (325)
T ss_pred ccCCceeehhhh-hhhhhccCcCcchhhh-hhc--------ccccccccccccccccccCCcccCCC
Confidence 378899999999 8999999999999988 553 24578888888888888888888876
No 9
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=98.17 E-value=1.4e-06 Score=81.97 Aligned_cols=45 Identities=47% Similarity=0.789 Sum_probs=38.7
Q ss_pred eeeccCCCcccccCccccccCCcCccccccccccCCCccccccCC
Q 022289 217 LEVYNQGMWKTELCNKWQETGSCPYGDYCQFAHDFTELRPVIRHP 261 (299)
Q Consensus 217 ~ev~~q~kyKTeLCr~F~~~G~C~yGDrCrFAH~~~ELR~~~~~p 261 (299)
..+.+..+|||++|.+|...|.|+||.+|+|+|+..+.+....++
T Consensus 167 ~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~~~~~~~ 211 (332)
T KOG1677|consen 167 NQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDRASNRHP 211 (332)
T ss_pred hhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCccccccccCC
Confidence 466778899999999999899999999999999999877654443
No 10
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.99 E-value=3.5e-06 Score=52.14 Aligned_cols=25 Identities=60% Similarity=1.329 Sum_probs=15.1
Q ss_pred cccccCccccccCCcCcccccccccc
Q 022289 225 WKTELCNKWQETGSCPYGDYCQFAHD 250 (299)
Q Consensus 225 yKTeLCr~F~~~G~C~yGDrCrFAH~ 250 (299)
+|+.+|++| ..|.|++|++|+|+|+
T Consensus 2 ~k~~~C~~~-~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 2 YKTELCKFF-KRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCCCcCcCc-cCCCCCCCCCcCCCCc
Confidence 455566666 3566666666666664
No 11
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=97.86 E-value=4.9e-06 Score=80.58 Aligned_cols=65 Identities=22% Similarity=0.488 Sum_probs=51.7
Q ss_pred CCCcccccCccccccCCcCcccc-ccccccCCCccccccCCCccccccccccCccccCCCCCCccCCCCCccC
Q 022289 222 QGMWKTELCNKWQETGSCPYGDY-CQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCHFRHSLTEQE 293 (299)
Q Consensus 222 q~kyKTeLCr~F~~~G~C~yGDr-CrFAH~~~ELR~~~~~p~~KT~~Ck~F~~~G~CpyG~rCrFaH~~~elr 293 (299)
..+..-++|+-|+ .|.|.+||+ |+|+|....... .+-+...|..|++ |.|.+ ++|+|.|...+++
T Consensus 32 ~~wl~~eVCReF~-rn~C~R~d~~CkfaHP~~~~~V----~~g~v~aC~Ds~k-grCsR-~nCkylHpp~hlk 97 (331)
T KOG2494|consen 32 TKWLTLEVCREFL-RNTCSRGDRECKFAHPPKNCQV----SNGRVIACFDSQK-GRCSR-ENCKYLHPPQHLK 97 (331)
T ss_pred cchhHHHHHHHHH-hccccCCCccccccCCCCCCCc----cCCeEEEEecccc-CccCc-ccceecCCChhhh
Confidence 3456679999999 899999999 999998764321 2234568999995 99997 6799999988765
No 12
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.73 E-value=2e-05 Score=48.71 Aligned_cols=26 Identities=58% Similarity=1.373 Sum_probs=22.6
Q ss_pred ccccccccccCccccCCCCCCccCCCC
Q 022289 263 YKTEVCRMVLSGGICPYGHRCHFRHSL 289 (299)
Q Consensus 263 ~KT~~Ck~F~~~G~CpyG~rCrFaH~~ 289 (299)
+++.+|++| ..|.|++|++|+|+|+.
T Consensus 2 ~k~~~C~~~-~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 2 YKTELCKFF-KRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence 467799999 57999999999999973
No 13
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=97.72 E-value=6.3e-06 Score=79.28 Aligned_cols=70 Identities=37% Similarity=0.750 Sum_probs=51.6
Q ss_pred CCcccccCccccccCCcCccccccccccCCCcccc--------c----------------cC--CCcc-ccccccccC--
Q 022289 223 GMWKTELCNKWQETGSCPYGDYCQFAHDFTELRPV--------I----------------RH--PKYK-TEVCRMVLS-- 273 (299)
Q Consensus 223 ~kyKTeLCr~F~~~G~C~yGDrCrFAH~~~ELR~~--------~----------------~~--p~~K-T~~Ck~F~~-- 273 (299)
...|+.+|-+|. .|.|..|+.|.|+|+....+.. . .| |... -.+|+||..
T Consensus 88 vDPKSvvCafFk-~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAv 166 (343)
T KOG1763|consen 88 VDPKSVVCAFFK-QGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAV 166 (343)
T ss_pred CCchHHHHHHHh-ccCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHHH
Confidence 378999999997 7999999999999998654321 0 11 2211 258999974
Q ss_pred ----cc---ccCCCC-CCccCCCCCccC
Q 022289 274 ----GG---ICPYGH-RCHFRHSLTEQE 293 (299)
Q Consensus 274 ----~G---~CpyG~-rCrFaH~~~elr 293 (299)
+| .||+|. .|.|.|...+.-
T Consensus 167 E~~kYGWfW~CPnGg~~C~YrHaLP~Gy 194 (343)
T KOG1763|consen 167 ENGKYGWFWECPNGGDKCIYRHALPEGY 194 (343)
T ss_pred hcCCccceeECCCCCCeeeeeecCCcch
Confidence 34 499985 999999987753
No 14
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=97.70 E-value=2.6e-05 Score=79.51 Aligned_cols=65 Identities=25% Similarity=0.406 Sum_probs=53.6
Q ss_pred CcccccCccccccCCcCccccccccc-cCCCccccccCCCccccccccccCccccCCCCCCccCCCCCccC
Q 022289 224 MWKTELCNKWQETGSCPYGDYCQFAH-DFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCHFRHSLTEQE 293 (299)
Q Consensus 224 kyKTeLCr~F~~~G~C~yGDrCrFAH-~~~ELR~~~~~p~~KT~~Ck~F~~~G~CpyG~rCrFaH~~~elr 293 (299)
-||++.|. .+.|.-+-.|-|+| +...-|-.+++=.|...+|+.|.+ |.|..|+.|-|+|+.-|.-
T Consensus 198 ~fKir~C~----R~~shDwteCPf~HpgEkARRRDPRkyhYs~tpCPefrk-G~C~rGD~CEyaHgvfEcw 263 (528)
T KOG1595|consen 198 SFKIRRCS----RPRSHDWTECPFAHPGEKARRRDPRKYHYSSTPCPEFRK-GSCERGDSCEYAHGVFECW 263 (528)
T ss_pred eeeecccC----CccCCCcccCCccCCCcccccCCcccccccCccCccccc-CCCCCCCccccccceehhh
Confidence 58999998 45799999999999 776666444444578899999985 9999999999999987743
No 15
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=97.07 E-value=0.00017 Score=68.10 Aligned_cols=67 Identities=34% Similarity=0.742 Sum_probs=51.0
Q ss_pred CcccccCccccccCCcCccccccccccCCCcccc--------c----------cCCCc-cccccccccC------cc---
Q 022289 224 MWKTELCNKWQETGSCPYGDYCQFAHDFTELRPV--------I----------RHPKY-KTEVCRMVLS------GG--- 275 (299)
Q Consensus 224 kyKTeLCr~F~~~G~C~yGDrCrFAH~~~ELR~~--------~----------~~p~~-KT~~Ck~F~~------~G--- 275 (299)
..|+.+|-.|. .+.|..|+.|.|+|+..+.+.. + ..|.. ...+|+||.. +|
T Consensus 82 dpK~~vcalF~-~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~W 160 (299)
T COG5252 82 DPKTVVCALFL-NKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWGW 160 (299)
T ss_pred CchhHHHHHhc-cCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCcccee
Confidence 78999999998 8999999999999997665431 0 11211 1368999973 22
Q ss_pred ccCCC-CCCccCCCCCc
Q 022289 276 ICPYG-HRCHFRHSLTE 291 (299)
Q Consensus 276 ~CpyG-~rCrFaH~~~e 291 (299)
.||+| .+|-|.|...+
T Consensus 161 ~CPng~~~C~y~H~Lp~ 177 (299)
T COG5252 161 TCPNGNMRCSYIHKLPD 177 (299)
T ss_pred eCCCCCceeeeeeccCc
Confidence 49998 79999999877
No 16
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=96.88 E-value=0.00049 Score=65.06 Aligned_cols=119 Identities=21% Similarity=0.384 Sum_probs=67.6
Q ss_pred hhccCCccceecCCcccccCCccccCCCCCCC-CCCeeeeCCCCCCchhHHhhhhhheeeccCCCcccccCccccccCCc
Q 022289 161 ERESFPKSISVRSSGCTIKPKQANASSGTSRP-RAQRVYVPPGNNKREEAEEAKAVELEVYNQGMWKTELCNKWQETGSC 239 (299)
Q Consensus 161 ~~~~~pksis~r~~~yl~~~~~~~~~~~~~~~-~~qr~~~~gg~k~~eeKe~~~~~~~ev~~q~kyKTeLCr~F~~~G~C 239 (299)
+...-||-+---.+.||+++...-+..++.+. .--|-|+..|--+ +|..-.+++..-.| .+|+.|+ .|+|
T Consensus 174 akgqcpkylywnnksyllkkkrflkevgnspsavycryynangicg-------kgaacrfvheptrk-ticpkfl-ngrc 244 (377)
T KOG1492|consen 174 AKGQCPKYLYWNNKSYLLKKKRFLKEVGNSPSAVYCRYYNANGICG-------KGAACRFVHEPTRK-TICPKFL-NGRC 244 (377)
T ss_pred hcCCCCceeEEcChhHHHHHHHHHHHhCCCCceeEEEEecCCCccc-------CCceeeeecccccc-ccChHHh-cCcc
Confidence 44567888777777788654311111122221 1235555444332 33344556665444 4999998 8999
Q ss_pred CccccccccccCCCccccc---------cCCC---------ccccccccccCccccCCCCCCccCCC
Q 022289 240 PYGDYCQFAHDFTELRPVI---------RHPK---------YKTEVCRMVLSGGICPYGHRCHFRHS 288 (299)
Q Consensus 240 ~yGDrCrFAH~~~ELR~~~---------~~p~---------~KT~~Ck~F~~~G~CpyG~rCrFaH~ 288 (299)
...+.|...|.....|-+. ..|. ....+|.-|.+.|+|.-|..|.-.|-
T Consensus 245 nkaedcnlsheldprripacryfllgkcnnpncryvhihysenapicfefakygfcelgtscknqhi 311 (377)
T KOG1492|consen 245 NKAEDCNLSHELDPRRIPACRYFLLGKCNNPNCRYVHIHYSENAPICFEFAKYGFCELGTSCKNQHI 311 (377)
T ss_pred CchhcCCcccccCccccchhhhhhhccCCCCCceEEEEeecCCCceeeeehhcceecccccccccee
Confidence 9999999999876544210 0110 11345666666666666666665554
No 17
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=96.66 E-value=0.0016 Score=62.42 Aligned_cols=58 Identities=24% Similarity=0.555 Sum_probs=43.2
Q ss_pred CcccccCccccccCCcCccccccccccCCCccccccCCCccccccccccCccccCCCCCCccCCCC
Q 022289 224 MWKTELCNKWQETGSCPYGDYCQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCHFRHSL 289 (299)
Q Consensus 224 kyKTeLCr~F~~~G~C~yGDrCrFAH~~~ELR~~~~~p~~KT~~Ck~F~~~G~CpyG~rCrFaH~~ 289 (299)
.+...+|++|. .|.|+.|..|.|+|+..-... -+..|++|...|.|..|..|.+.|..
T Consensus 101 ~~s~V~c~~~~-~g~c~s~~~c~~lh~~d~~~s-------~~~~c~~Fs~~G~cs~g~~c~~~h~d 158 (285)
T COG5084 101 LSSSVVCKFFL-RGLCKSGFSCEFLHEYDLRSS-------QGPPCRSFSLKGSCSSGPSCGYSHID 158 (285)
T ss_pred ccCCcccchhc-cccCcCCCccccccCCCcccc-------cCCCcccccccceeccCCCCCccccC
Confidence 47789999998 899999999999998865432 13467777556777777777777665
No 18
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=96.11 E-value=0.003 Score=59.85 Aligned_cols=66 Identities=24% Similarity=0.516 Sum_probs=46.4
Q ss_pred cccccCccccccCCcCccccccccccCCCcccc---------------ccCC--CccccccccccCccccCCCCCCccCC
Q 022289 225 WKTELCNKWQETGSCPYGDYCQFAHDFTELRPV---------------IRHP--KYKTEVCRMVLSGGICPYGHRCHFRH 287 (299)
Q Consensus 225 yKTeLCr~F~~~G~C~yGDrCrFAH~~~ELR~~---------------~~~p--~~KT~~Ck~F~~~G~CpyG~rCrFaH 287 (299)
.....|++|...|.|-.|..|+|.|....-.-. ..|. ..+...|++|. .|.|-+ .+|+|.|
T Consensus 204 psavycryynangicgkgaacrfvheptrkticpkflngrcnkaedcnlsheldprripacryfl-lgkcnn-pncryvh 281 (377)
T KOG1492|consen 204 PSAVYCRYYNANGICGKGAACRFVHEPTRKTICPKFLNGRCNKAEDCNLSHELDPRRIPACRYFL-LGKCNN-PNCRYVH 281 (377)
T ss_pred CceeEEEEecCCCcccCCceeeeeccccccccChHHhcCccCchhcCCcccccCccccchhhhhh-hccCCC-CCceEEE
Confidence 456789999989999999999999987542100 0121 22456788888 488874 7888888
Q ss_pred CCCcc
Q 022289 288 SLTEQ 292 (299)
Q Consensus 288 ~~~el 292 (299)
-+-..
T Consensus 282 ihyse 286 (377)
T KOG1492|consen 282 IHYSE 286 (377)
T ss_pred EeecC
Confidence 76543
No 19
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.96 E-value=0.0033 Score=63.16 Aligned_cols=25 Identities=36% Similarity=1.004 Sum_probs=22.5
Q ss_pred ccccccccCccccCCCCCCccCCCCC
Q 022289 265 TEVCRMVLSGGICPYGHRCHFRHSLT 290 (299)
Q Consensus 265 T~~Ck~F~~~G~CpyG~rCrFaH~~~ 290 (299)
..+|+||.. |.|+||.+|||.|+..
T Consensus 140 MkpC~ffLe-g~CRF~enCRfSHG~~ 164 (486)
T KOG2185|consen 140 MKPCKFFLE-GRCRFGENCRFSHGLD 164 (486)
T ss_pred hccchHhhc-cccccCcccccccCcc
Confidence 569999995 9999999999999964
No 20
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.70 E-value=0.0036 Score=58.13 Aligned_cols=56 Identities=29% Similarity=0.559 Sum_probs=36.7
Q ss_pred CCCCCCchhHHhhhhhheeeccCCCcccccCccccccCCcCccccccccccCCCcc
Q 022289 200 PPGNNKREEAEEAKAVELEVYNQGMWKTELCNKWQETGSCPYGDYCQFAHDFTELR 255 (299)
Q Consensus 200 ~gg~k~~eeKe~~~~~~~ev~~q~kyKTeLCr~F~~~G~C~yGDrCrFAH~~~ELR 255 (299)
-.|++..+.|-..++..+.-----.+...+|+.|..+|.|-|||.|.|.|+..++.
T Consensus 114 m~~k~~~~~K~~~~Pt~~r~~~viD~qpdVCKdyk~TGYCGYGDsCKflH~R~D~K 169 (259)
T COG5152 114 MSGKNKRLTKQINQPTMFRDGEVIDTQPDVCKDYKETGYCGYGDSCKFLHDRSDFK 169 (259)
T ss_pred ccccchhhhhhccCCceeeccceeecCcccccchhhcccccCCchhhhhhhhhhhh
Confidence 45555544443333321111111146778999999999999999999999988653
No 21
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=95.59 E-value=0.0057 Score=59.67 Aligned_cols=69 Identities=22% Similarity=0.466 Sum_probs=43.7
Q ss_pred CcccccCccccccCCcCccccccccccCCCcccc---------------ccCCCccccccccccCccccCCCCC-CccCC
Q 022289 224 MWKTELCNKWQETGSCPYGDYCQFAHDFTELRPV---------------IRHPKYKTEVCRMVLSGGICPYGHR-CHFRH 287 (299)
Q Consensus 224 kyKTeLCr~F~~~G~C~yGDrCrFAH~~~ELR~~---------------~~~p~~KT~~Ck~F~~~G~CpyG~r-CrFaH 287 (299)
..|...|.+|...|.|..|..|-|.|+..+.... ..+-..+..+|+.|.. |+|+-|.. |.+.|
T Consensus 102 ~~k~rec~ff~~~g~c~~~~~c~y~h~dpqt~~k~c~~~~~g~c~~g~~c~~~h~~~~~c~~y~~-gfC~~g~q~c~~~h 180 (325)
T KOG1040|consen 102 LTKMRECKFFSLFGECTNGKDCPYLHGDPQTAIKKCKWYKEGFCRGGPSCKKRHERKVLCPPYNA-GFCPKGPQRCDMLH 180 (325)
T ss_pred hcccccccccccccccccccCCcccCCChhhhhhccchhhhccCCCcchhhhhhhcccCCCchhh-hhccCCCCcccccC
Confidence 4566789999989999999999999998422110 0000112356666663 66666665 66666
Q ss_pred CCCccC
Q 022289 288 SLTEQE 293 (299)
Q Consensus 288 ~~~elr 293 (299)
....+-
T Consensus 181 p~~~~~ 186 (325)
T KOG1040|consen 181 PEFQQP 186 (325)
T ss_pred CCCCCC
Confidence 655443
No 22
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.32 E-value=0.0069 Score=60.95 Aligned_cols=40 Identities=20% Similarity=0.518 Sum_probs=31.1
Q ss_pred hhhheeeccCCCcccccCccccccCCcCccccccccccCCC
Q 022289 213 KAVELEVYNQGMWKTELCNKWQETGSCPYGDYCQFAHDFTE 253 (299)
Q Consensus 213 ~~~~~ev~~q~kyKTeLCr~F~~~G~C~yGDrCrFAH~~~E 253 (299)
.++.+-+.++---..++|+||+ .|.|+||.+|+|.||..-
T Consensus 126 arvRVlfl~PTh~sMkpC~ffL-eg~CRF~enCRfSHG~~V 165 (486)
T KOG2185|consen 126 ARVRVLFLTPTHESMKPCKFFL-EGRCRFGENCRFSHGLDV 165 (486)
T ss_pred cceEEEeecCcchhhccchHhh-ccccccCcccccccCccc
Confidence 4455555555555668999999 899999999999999753
No 23
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=94.40 E-value=0.021 Score=33.97 Aligned_cols=11 Identities=55% Similarity=1.377 Sum_probs=5.6
Q ss_pred cCccccccccc
Q 022289 239 CPYGDYCQFAH 249 (299)
Q Consensus 239 C~yGDrCrFAH 249 (299)
|++|++|.|.|
T Consensus 8 C~~~~~C~f~H 18 (19)
T PF14608_consen 8 CTNGDNCPFSH 18 (19)
T ss_pred CCCCCcCccCC
Confidence 55555555544
No 24
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.38 E-value=0.014 Score=54.30 Aligned_cols=27 Identities=33% Similarity=0.853 Sum_probs=24.5
Q ss_pred ccccccccCccccCCCCCCccCCCCCc
Q 022289 265 TEVCRMVLSGGICPYGHRCHFRHSLTE 291 (299)
Q Consensus 265 T~~Ck~F~~~G~CpyG~rCrFaH~~~e 291 (299)
..+|+.|..+|+|-||+.|.|.|...+
T Consensus 141 pdVCKdyk~TGYCGYGDsCKflH~R~D 167 (259)
T COG5152 141 PDVCKDYKETGYCGYGDSCKFLHDRSD 167 (259)
T ss_pred cccccchhhcccccCCchhhhhhhhhh
Confidence 358999999999999999999999764
No 25
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=94.30 E-value=0.029 Score=33.38 Aligned_cols=19 Identities=32% Similarity=0.884 Sum_probs=16.2
Q ss_pred ccccccCccccCCCCCCccCCC
Q 022289 267 VCRMVLSGGICPYGHRCHFRHS 288 (299)
Q Consensus 267 ~Ck~F~~~G~CpyG~rCrFaH~ 288 (299)
+|++|.. |++|+.|.|.|.
T Consensus 1 ~Ck~~~~---C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN---CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC---CCCCCcCccCCc
Confidence 5887763 999999999995
No 26
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=93.93 E-value=0.043 Score=52.88 Aligned_cols=58 Identities=28% Similarity=0.622 Sum_probs=47.3
Q ss_pred ccccCccccccCCcCccccccccccCCCccccccCCCccccccccccC--ccccCCCCCCccCCCCCcc
Q 022289 226 KTELCNKWQETGSCPYGDYCQFAHDFTELRPVIRHPKYKTEVCRMVLS--GGICPYGHRCHFRHSLTEQ 292 (299)
Q Consensus 226 KTeLCr~F~~~G~C~yGDrCrFAH~~~ELR~~~~~p~~KT~~Ck~F~~--~G~CpyG~rCrFaH~~~el 292 (299)
..-.|++|...|.|..|..|.|.|.... -.-..|.+|.. .|.|++|..|+|.|.....
T Consensus 133 ~~~~c~~Fs~~G~cs~g~~c~~~h~dp~---------~~~~~~~~~~~~~~~f~p~g~~c~~~H~~~~~ 192 (285)
T COG5084 133 QGPPCRSFSLKGSCSSGPSCGYSHIDPD---------SFAGNCDQYSGATYGFCPLGASCKFSHTLKRV 192 (285)
T ss_pred cCCCcccccccceeccCCCCCccccCcc---------cccccccccCcccccccCCCCccccccccccc
Confidence 4778999977899999999999998622 12457888874 6999999999999998643
No 27
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.08 E-value=0.1 Score=53.91 Aligned_cols=57 Identities=23% Similarity=0.487 Sum_probs=39.6
Q ss_pred ccCccccccCCcCccccccccccCCCccccccCCCccccccccccCccccCCCCCCccCCCCCccCc
Q 022289 228 ELCNKWQETGSCPYGDYCQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCHFRHSLTEQER 294 (299)
Q Consensus 228 eLCr~F~~~G~C~yGDrCrFAH~~~ELR~~~~~p~~KT~~Ck~F~~~G~CpyG~rCrFaH~~~elrr 294 (299)
..|.+|+..-.|+. .|.|-|+.-.+. ..-.+|.+|.....|.. .+|-|.|...++..
T Consensus 33 t~C~~w~~~~~C~k--~C~YRHSe~~~k-------r~e~~CYwe~~p~gC~k-~~CgfRH~~pPLkg 89 (667)
T KOG4791|consen 33 TVCTLWQEGRCCRK--VCRYRHSEIDKK-------RSEIPCYWENQPTGCQK-LNCGFRHNRPPLKG 89 (667)
T ss_pred chhhhhhhcCcccc--cccchhhHHhhh-------cCcccceeecCCCccCC-CccccccCCCchhh
Confidence 46777775555664 777777755443 12458999987556985 99999998766653
No 28
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.57 E-value=0.067 Score=55.17 Aligned_cols=55 Identities=31% Similarity=0.614 Sum_probs=43.3
Q ss_pred ccCccccccCCcCccccccccccCCCccccccCCCccccccccccCccccCCCCCCccCCCCCccC
Q 022289 228 ELCNKWQETGSCPYGDYCQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCHFRHSLTEQE 293 (299)
Q Consensus 228 eLCr~F~~~G~C~yGDrCrFAH~~~ELR~~~~~p~~KT~~Ck~F~~~G~CpyG~rCrFaH~~~elr 293 (299)
..|.+|+ -..|++|+.|.|.|....+.. ...|.+|+..-.|+- .|+|.|+.-...
T Consensus 4 ~dcyff~-ys~cKk~d~c~~rh~E~al~n--------~t~C~~w~~~~~C~k--~C~YRHSe~~~k 58 (667)
T KOG4791|consen 4 EDCYFFF-YSTCKKGDSCPFRHCEAALGN--------ETVCTLWQEGRCCRK--VCRYRHSEIDKK 58 (667)
T ss_pred ccchhhh-hhhhhccCcCcchhhHHHhcC--------cchhhhhhhcCcccc--cccchhhHHhhh
Confidence 4688776 568999999999998876643 458999998656764 999999876554
No 29
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=90.26 E-value=0.23 Score=49.26 Aligned_cols=31 Identities=23% Similarity=0.105 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhhhhHHHhhHHHHHHHhhhhc
Q 022289 103 ITRELETLRQQNADLRLANARLLKIITGSFH 133 (299)
Q Consensus 103 ~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~~ 133 (299)
..+|..+||+||+.|+.+|++|...++-|..
T Consensus 30 ~~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~ 60 (420)
T PF07407_consen 30 SIDENFALRMENHSLKKENNDLKIEVERLEN 60 (420)
T ss_pred chhhhhhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999998864
No 30
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.16 E-value=0.092 Score=51.08 Aligned_cols=32 Identities=38% Similarity=1.017 Sum_probs=28.7
Q ss_pred CcccccCccccccCCcCccccccccccCCCcc
Q 022289 224 MWKTELCNKWQETGSCPYGDYCQFAHDFTELR 255 (299)
Q Consensus 224 kyKTeLCr~F~~~G~C~yGDrCrFAH~~~ELR 255 (299)
.|..-+|+-|-.+|.|-||+.|.|.|+..++.
T Consensus 183 d~qpDicKdykeTgycg~gdSckFlh~r~DyK 214 (313)
T KOG1813|consen 183 DYQPDICKDYKETGYCGYGDSCKFLHDRSDYK 214 (313)
T ss_pred ecCchhhhhhHhhCcccccchhhhhhhhhhcc
Confidence 46778999999999999999999999998763
No 31
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.18 E-value=0.11 Score=50.59 Aligned_cols=27 Identities=30% Similarity=0.849 Sum_probs=24.5
Q ss_pred ccccccccCccccCCCCCCccCCCCCc
Q 022289 265 TEVCRMVLSGGICPYGHRCHFRHSLTE 291 (299)
Q Consensus 265 T~~Ck~F~~~G~CpyG~rCrFaH~~~e 291 (299)
..+|+.|..+|+|-||+.|.|.|...+
T Consensus 186 pDicKdykeTgycg~gdSckFlh~r~D 212 (313)
T KOG1813|consen 186 PDICKDYKETGYCGYGDSCKFLHDRSD 212 (313)
T ss_pred chhhhhhHhhCcccccchhhhhhhhhh
Confidence 458999999999999999999999764
No 32
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=86.03 E-value=0.27 Score=48.37 Aligned_cols=26 Identities=42% Similarity=0.884 Sum_probs=22.9
Q ss_pred ccccccccCccccCCCCC-CccCCCCCc
Q 022289 265 TEVCRMVLSGGICPYGHR-CHFRHSLTE 291 (299)
Q Consensus 265 T~~Ck~F~~~G~CpyG~r-CrFaH~~~e 291 (299)
-.+|+.|++ |.|.+|++ |+|+|....
T Consensus 37 ~eVCReF~r-n~C~R~d~~CkfaHP~~~ 63 (331)
T KOG2494|consen 37 LEVCREFLR-NTCSRGDRECKFAHPPKN 63 (331)
T ss_pred HHHHHHHHh-ccccCCCccccccCCCCC
Confidence 369999996 99999999 999998754
No 33
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=85.76 E-value=1.4 Score=33.19 Aligned_cols=32 Identities=31% Similarity=0.449 Sum_probs=27.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 022289 88 QLCDHYDLCFSRLQAITRELETLRQQNADLRL 119 (299)
Q Consensus 88 ~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~ 119 (299)
.--.||...|..=+....|.+.|++||.+||.
T Consensus 23 ~~l~rY~~vL~~R~~l~~e~~~L~~qN~eLr~ 54 (60)
T PF14775_consen 23 NFLKRYNKVLLDRAALIQEKESLEQQNEELRS 54 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578998998888899999999999999885
No 34
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=85.31 E-value=4.3 Score=34.26 Aligned_cols=36 Identities=28% Similarity=0.407 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhh
Q 022289 97 FSRLQAITRELETLRQQNADLRLANARLLKIITGSF 132 (299)
Q Consensus 97 l~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~ 132 (299)
+.-|.+.-..+..|=.||+.|+++|.+|..+|..+.
T Consensus 21 ~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 21 LKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566666777777899999999999999999773
No 35
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.93 E-value=0.34 Score=47.86 Aligned_cols=24 Identities=33% Similarity=1.100 Sum_probs=22.6
Q ss_pred ccCccccccCCcCccccccccccCC
Q 022289 228 ELCNKWQETGSCPYGDYCQFAHDFT 252 (299)
Q Consensus 228 eLCr~F~~~G~C~yGDrCrFAH~~~ 252 (299)
.+|++|+ .|.|+||+.|+|.|...
T Consensus 9 tic~~~~-~g~c~~g~~cr~~h~~~ 32 (344)
T KOG1039|consen 9 TICKYYQ-KGNCKFGDLCRLSHSLP 32 (344)
T ss_pred hhhhhcc-cccccccceeeeeccCc
Confidence 7999998 89999999999999876
No 36
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=83.93 E-value=2.2 Score=35.25 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhhc
Q 022289 98 SRLQAITRELETLRQQNADLRLANARLLKIITGSFH 133 (299)
Q Consensus 98 ~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~~ 133 (299)
.++.+.-.|++.++.||++|+..|.+|...|..|..
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 577888999999999999999999999999999954
No 37
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=83.10 E-value=6.6 Score=32.79 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhhc
Q 022289 98 SRLQAITRELETLRQQNADLRLANARLLKIITGSFH 133 (299)
Q Consensus 98 ~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~~ 133 (299)
.-|.+.-..+..|=.||++||++|.+|..+|..+..
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555556666778999999999999999998855
No 38
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=82.15 E-value=0.59 Score=44.72 Aligned_cols=27 Identities=22% Similarity=0.605 Sum_probs=22.6
Q ss_pred ccccccccccCccccCCCCCCccCCCCC
Q 022289 263 YKTEVCRMVLSGGICPYGHRCHFRHSLT 290 (299)
Q Consensus 263 ~KT~~Ck~F~~~G~CpyG~rCrFaH~~~ 290 (299)
++...|..|.. +.|.+|..|-|.|...
T Consensus 150 ~rea~C~~~e~-~~C~rG~~CnFmH~k~ 176 (260)
T KOG2202|consen 150 FREAICGQFER-TECSRGGACNFMHVKR 176 (260)
T ss_pred hhhhhhccccc-ccCCCCCcCcchhhhh
Confidence 34567999986 6999999999999763
No 39
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=81.96 E-value=5.7 Score=33.67 Aligned_cols=52 Identities=23% Similarity=0.366 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhhc
Q 022289 75 HRLQQARLILEYQQLCDHYDLCFSRLQAITRELETLRQQNADLRLANARLLKIITGSFH 133 (299)
Q Consensus 75 ~rl~~arl~l~~q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~~ 133 (299)
-|-..||||-|--|+-| -|-|.+.-+++.+.||..||.+|.-|-.-|+-|-.
T Consensus 54 ~~EEKaRlItQVLELQn-------TLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMS 105 (120)
T KOG3650|consen 54 VEEEKARLITQVLELQN-------TLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMS 105 (120)
T ss_pred hHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Confidence 34567999998888765 46788888999999999999999999988887753
No 40
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=80.12 E-value=0.45 Score=46.61 Aligned_cols=29 Identities=34% Similarity=0.831 Sum_probs=25.3
Q ss_pred cccccccccCccccCCCCCCccCCCCCccC
Q 022289 264 KTEVCRMVLSGGICPYGHRCHFRHSLTEQE 293 (299)
Q Consensus 264 KT~~Ck~F~~~G~CpyG~rCrFaH~~~elr 293 (299)
|+.+|-+|.. |.|.-|..|.|+|+....+
T Consensus 91 KSvvCafFk~-g~C~KG~kCKFsHdl~~~~ 119 (343)
T KOG1763|consen 91 KSVVCAFFKQ-GTCTKGDKCKFSHDLAVER 119 (343)
T ss_pred hHHHHHHHhc-cCCCCCCcccccchHHHhh
Confidence 6789999984 9999999999999986554
No 41
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=79.54 E-value=5.4 Score=33.18 Aligned_cols=66 Identities=26% Similarity=0.313 Sum_probs=40.4
Q ss_pred cchhhhhcccCCCCCCCCCCCCchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhH
Q 022289 43 VDFSSIYNSVFPPRSSLSPSLITDDRHRMATEHRLQQARLILEYQQLCDHYDLCFSRLQAITRELETLRQQNADLRLANA 122 (299)
Q Consensus 43 ~~f~sly~s~~~~~~~ls~s~~~~~~~~~~t~~rl~~arl~l~~q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~ 122 (299)
.+|++| |+|.++..+..+.. ..|.+.+++|- |=+|. .||+.|. ..|++.-.+||.++.
T Consensus 31 pVFt~l----~~~~~~~~~~~~~~-----~~e~~Y~Qs~~---Yv~~N-------erLqqa~---~~Lkkk~e~L~~age 88 (97)
T PF15136_consen 31 PVFTIL----DSPDPSNKNEDSES-----EREQQYQQSRT---YVAMN-------ERLQQAR---DQLKKKCEELRQAGE 88 (97)
T ss_pred Ceeeee----ccCccccccCCCcc-----hHHHHHHHHHH---HHHHH-------HHHHHHH---HHHHHHHHHHHHHHH
Confidence 567777 77776654332222 13333333332 12232 3566665 678999999999999
Q ss_pred HHHHHHhh
Q 022289 123 RLLKIITG 130 (299)
Q Consensus 123 ~L~~~l~~ 130 (299)
+|-+.|..
T Consensus 89 ~Le~~i~~ 96 (97)
T PF15136_consen 89 ELERDIEQ 96 (97)
T ss_pred HHHHHHhc
Confidence 99988864
No 42
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=78.09 E-value=6.9 Score=37.50 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=42.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhhc
Q 022289 83 ILEYQQLCDHYDLCFSRLQAITRELETLRQQNADLRLANARLLKIITGSFH 133 (299)
Q Consensus 83 ~l~~q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~~ 133 (299)
+-+|-||-++|+.|--.|.+...|-+.|+.||.+|-..=..+..+|..+..
T Consensus 127 v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~ 177 (290)
T COG4026 127 VPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEV 177 (290)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345889999999999999999999999999999888766666666665543
No 43
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=75.37 E-value=2.4 Score=30.40 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhh
Q 022289 81 RLILEYQQLCDHYDLCFSRLQAITRELETLRQQNADLRLAN 121 (299)
Q Consensus 81 rl~l~~q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~N 121 (299)
+.++|..+|+..-..=-.++++...|+..|..||..||.-+
T Consensus 4 k~~~qn~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 4 KYSRQNRELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp --------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 35667788888888888899999999999999999999754
No 44
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=75.27 E-value=13 Score=29.78 Aligned_cols=41 Identities=20% Similarity=0.236 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhhc
Q 022289 93 YDLCFSRLQAITRELETLRQQNADLRLANARLLKIITGSFH 133 (299)
Q Consensus 93 y~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~~ 133 (299)
-...=.-|.+..+.++..+.||.-|+.+|.-|..-|.-|..
T Consensus 25 i~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 25 ILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344568889999999999999999999999999998864
No 45
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=74.36 E-value=15 Score=39.04 Aligned_cols=45 Identities=22% Similarity=0.331 Sum_probs=35.9
Q ss_pred HHhhHHHHHHHHHH------HHHHHHHHHhhhhhHHHhhHHHHHHHhhhhc
Q 022289 89 LCDHYDLCFSRLQA------ITRELETLRQQNADLRLANARLLKIITGSFH 133 (299)
Q Consensus 89 ~~~ry~lcl~rL~~------~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~~ 133 (299)
|-||-.-|++|-.. .-.-+.+|=.||..||.+|.-|.++|..|..
T Consensus 287 IKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 287 IKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 45999999998642 2334567888999999999999999999875
No 46
>PF11418 Scaffolding_pro: Phi29 scaffolding protein; InterPro: IPR024374 This protein is also referred to as Gp7. The protein contains a DNA-binding function and may have a role in mediating the structural transition from prohead to mature virus and also scaffold release [].Gp7 is arranged within the capsid as a series of concentric shells [].; PDB: 1NOH_C 1NO4_C 3MTU_E 3OA7_A.
Probab=73.87 E-value=17 Score=30.12 Aligned_cols=46 Identities=28% Similarity=0.375 Sum_probs=37.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhh
Q 022289 87 QQLCDHYDLCFSRLQAITRELETLRQQNADLRLANARLLKIITGSF 132 (299)
Q Consensus 87 q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~ 132 (299)
|.|-.-|---++-.-|.+.-.+.|+.|+.+|-|+|+-|-+.+.+--
T Consensus 29 qqlr~~~~sf~sEy~dlT~~~eKl~aek~DL~vsNskLFrQ~~lt~ 74 (97)
T PF11418_consen 29 QQLRESYTSFHSEYEDLTEALEKLTAEKEDLIVSNSKLFRQHGLTP 74 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhCCCc
Confidence 4455567777788888888899999999999999999998876643
No 47
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=69.80 E-value=11 Score=27.92 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhh
Q 022289 98 SRLQAITRELETLRQQNADLRLANARLLKIITGS 131 (299)
Q Consensus 98 ~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~ 131 (299)
.++...-.|+++|..++.+|+..|.+|...|..|
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677889999999999999999999999988
No 48
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=69.16 E-value=9.6 Score=31.53 Aligned_cols=40 Identities=13% Similarity=0.098 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhhccccCC
Q 022289 99 RLQAITRELETLRQQNADLRLANARLLKIITGSFHRMTED 138 (299)
Q Consensus 99 rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~~~~~~~ 138 (299)
.+.+..+|++.|++|+.+|+.+|.-|.+.++....+.-.+
T Consensus 72 ~~~~~~~ei~~L~~el~~L~~E~diLKKa~~~~~~~~~~~ 111 (121)
T PRK09413 72 ELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIA 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Confidence 3556678899999999999999998888888887654333
No 49
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=68.83 E-value=2.3 Score=40.76 Aligned_cols=37 Identities=19% Similarity=0.533 Sum_probs=30.8
Q ss_pred hhheeeccCCCcccccCccccccCCcCccccccccccC
Q 022289 214 AVELEVYNQGMWKTELCNKWQETGSCPYGDYCQFAHDF 251 (299)
Q Consensus 214 ~~~~ev~~q~kyKTeLCr~F~~~G~C~yGDrCrFAH~~ 251 (299)
++-.++.+--.++..+|..|. .+.|.+|..|.|.|-.
T Consensus 139 pi~ae~~pvT~~rea~C~~~e-~~~C~rG~~CnFmH~k 175 (260)
T KOG2202|consen 139 PIHAELSPVTDFREAICGQFE-RTECSRGGACNFMHVK 175 (260)
T ss_pred cceeeecCcCchhhhhhcccc-cccCCCCCcCcchhhh
Confidence 345566777789999999998 5699999999999965
No 50
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=68.14 E-value=12 Score=29.16 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=10.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Q 022289 82 LILEYQQLCDHYDLCFSRLQAITR 105 (299)
Q Consensus 82 l~l~~q~~~~ry~lcl~rL~~~~~ 105 (299)
|=.+|+..+|.+.+==-.+.+.-.
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke 32 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKE 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555543333333333
No 51
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=65.30 E-value=3.6 Score=26.05 Aligned_cols=20 Identities=35% Similarity=0.689 Sum_probs=9.5
Q ss_pred cCccccccCCcCccccccccc
Q 022289 229 LCNKWQETGSCPYGDYCQFAH 249 (299)
Q Consensus 229 LCr~F~~~G~C~yGDrCrFAH 249 (299)
+|++-...|.|.. +.|.|.|
T Consensus 2 lC~yEl~Gg~Cnd-~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCND-PDCEFQH 21 (23)
T ss_pred CCccccCCCeeCC-CCCCccc
Confidence 4554443345542 4555555
No 52
>PHA00489 scaffolding protein
Probab=63.91 E-value=21 Score=29.75 Aligned_cols=42 Identities=31% Similarity=0.515 Sum_probs=34.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHH
Q 022289 87 QQLCDHYDLCFSRLQAITRELETLRQQNADLRLANARLLKII 128 (299)
Q Consensus 87 q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l 128 (299)
|.|-.-|---++-.-+.+.-++.|+.|+.+|-|+|+-|-+.|
T Consensus 30 qqlr~~ygSf~sEy~elT~a~eKl~aek~DLivsNskLFrql 71 (101)
T PHA00489 30 QQLRESYGSFHSEYEELTEALEKLTAEKEDLIVSNSKLFRQL 71 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHc
Confidence 455566777777777888888999999999999999987554
No 53
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=63.30 E-value=16 Score=27.86 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhhc
Q 022289 100 LQAITRELETLRQQNADLRLANARLLKIITGSFH 133 (299)
Q Consensus 100 L~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~~ 133 (299)
+++...|++.+..|..+|...|.+|...++.|..
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4577888899999999999999999998888853
No 54
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=58.11 E-value=65 Score=25.19 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhhHHHH
Q 022289 99 RLQAITRELETLRQQNADLRLANARLL 125 (299)
Q Consensus 99 rL~~~~~E~~~Lr~En~~Lr~~N~~L~ 125 (299)
+.+.|++-++.|+.|+.+|+-.|..|.
T Consensus 12 ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334455555555555555555444443
No 55
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=56.82 E-value=19 Score=35.36 Aligned_cols=36 Identities=39% Similarity=0.599 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 022289 78 QQARLILEYQQLCDHYDLCFSRLQAITRELETLRQQ 113 (299)
Q Consensus 78 ~~arl~l~~q~~~~ry~lcl~rL~~~~~E~~~Lr~E 113 (299)
.+..|..+-+++-+||.-|+.-|++|=.|+..||.-
T Consensus 270 ~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~~ 305 (306)
T PF04849_consen 270 SQRQLQAELQELQDKYAECMAMLHEAQEELKTLRKR 305 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 345688889999999999999999999999999863
No 56
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=56.60 E-value=63 Score=30.03 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhhhhhH----------HHhhHHHHHHHhhh
Q 022289 99 RLQAITRELETLRQQNADL----------RLANARLLKIITGS 131 (299)
Q Consensus 99 rL~~~~~E~~~Lr~En~~L----------r~~N~~L~~~l~~~ 131 (299)
.+.++.+|-+.|+.||++| +.+|..|..+|...
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~ 112 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLK 112 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3444444555555554444 33555555555443
No 57
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=56.54 E-value=2.7 Score=40.39 Aligned_cols=30 Identities=37% Similarity=0.772 Sum_probs=25.6
Q ss_pred cccccccccCccccCCCCCCccCCCCCccCc
Q 022289 264 KTEVCRMVLSGGICPYGHRCHFRHSLTEQER 294 (299)
Q Consensus 264 KT~~Ck~F~~~G~CpyG~rCrFaH~~~elrr 294 (299)
|+.+|-.|.. +.|.-|..|.|+|+..+.++
T Consensus 84 K~~vcalF~~-~~c~kg~~ckF~h~~ee~r~ 113 (299)
T COG5252 84 KTVVCALFLN-KTCAKGDACKFAHGKEEARK 113 (299)
T ss_pred hhHHHHHhcc-CccccCchhhhhcchHHHhh
Confidence 6889999985 89999999999999766543
No 58
>PRK14127 cell division protein GpsB; Provisional
Probab=56.02 E-value=43 Score=28.29 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=12.2
Q ss_pred HHHHHHHhhhhhHHHhhHHHHHHHh
Q 022289 105 RELETLRQQNADLRLANARLLKIIT 129 (299)
Q Consensus 105 ~E~~~Lr~En~~Lr~~N~~L~~~l~ 129 (299)
+|.+.|+.||.+|+....++..++.
T Consensus 44 ~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 44 KEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444455555555554444444444
No 59
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=55.75 E-value=42 Score=28.35 Aligned_cols=44 Identities=25% Similarity=0.190 Sum_probs=28.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhh
Q 022289 88 QLCDHYDLCFSRLQAITRELETLRQQNADLRLANARLLKIITGS 131 (299)
Q Consensus 88 ~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~ 131 (299)
+|-++...==..|....+|++.|+.+-.+|=-+|..|...-.-|
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~L 48 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKL 48 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445677777777777777777777777776654444
No 60
>smart00338 BRLZ basic region leucin zipper.
Probab=54.21 E-value=29 Score=25.58 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhh
Q 022289 99 RLQAITRELETLRQQNADLRLANARLLKIITGS 131 (299)
Q Consensus 99 rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~ 131 (299)
++.+.-.++..|..||.+|+.....|...+..|
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777777777666655
No 61
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=53.03 E-value=43 Score=31.98 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhhhhh-----------HHHhhHHHHHHHhhhh
Q 022289 97 FSRLQAITRELETLRQQNAD-----------LRLANARLLKIITGSF 132 (299)
Q Consensus 97 l~rL~~~~~E~~~Lr~En~~-----------Lr~~N~~L~~~l~~~~ 132 (299)
+..|.+.-+|-+.||+|+++ |+.+|..|.++|++-.
T Consensus 65 ~~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~~ 111 (283)
T TIGR00219 65 LKDVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSPL 111 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 34455555555566655543 5667888888777754
No 62
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=52.92 E-value=33 Score=29.80 Aligned_cols=46 Identities=33% Similarity=0.458 Sum_probs=36.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH----HHHHHHHhhhhhHHHhhHHHHHHH
Q 022289 83 ILEYQQLCDHYDLCFSRLQAIT----RELETLRQQNADLRLANARLLKII 128 (299)
Q Consensus 83 ~l~~q~~~~ry~lcl~rL~~~~----~E~~~Lr~En~~Lr~~N~~L~~~l 128 (299)
+.+.|.+..-||-=+.+|..-. .|+..||.+..++...|.-|.++|
T Consensus 82 ~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 82 IQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3556777777777777776554 589999999999999999998875
No 63
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=52.33 E-value=43 Score=33.30 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhh
Q 022289 91 DHYDLCFSRLQAITRELETLRQQNADLRLANARLLKIITGSF 132 (299)
Q Consensus 91 ~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~ 132 (299)
+=++.||..+.++..+...|-+||.+|+.+++.|..+|+.+.
T Consensus 130 el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v 171 (342)
T PF06632_consen 130 ELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFV 171 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788888888888999999999999999988888887765
No 64
>PRK14127 cell division protein GpsB; Provisional
Probab=51.92 E-value=25 Score=29.72 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhhcc
Q 022289 100 LQAITRELETLRQQNADLRLANARLLKIITGSFHR 134 (299)
Q Consensus 100 L~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~~~ 134 (299)
|.+.+.+.++|-.||.+|+-.|..|...|..+..+
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~ 66 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQ 66 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66777788899999999999999999998888753
No 65
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=51.34 E-value=55 Score=27.37 Aligned_cols=45 Identities=31% Similarity=0.247 Sum_probs=34.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhh
Q 022289 88 QLCDHYDLCFSRLQAITRELETLRQQNADLRLANARLLKIITGSF 132 (299)
Q Consensus 88 ~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~ 132 (299)
+|-++...==..|....+|++.|+..-.+|=-+|..|.....-|-
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr 49 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLR 49 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555567888888888999888888889988887776663
No 66
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=50.24 E-value=79 Score=27.15 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhhhhhHHHhhHHHHHHHhh
Q 022289 102 AITRELETLRQQNADLRLANARLLKIITG 130 (299)
Q Consensus 102 ~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~ 130 (299)
+.-+-+..|=.||..||.+|.+|..||..
T Consensus 26 ~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 26 GLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 33344555667999999999999999976
No 67
>PRK10884 SH3 domain-containing protein; Provisional
Probab=46.50 E-value=1.1e+02 Score=28.36 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=8.5
Q ss_pred HHhhhhhHHHhhHHHHHHHh
Q 022289 110 LRQQNADLRLANARLLKIIT 129 (299)
Q Consensus 110 Lr~En~~Lr~~N~~L~~~l~ 129 (299)
|..||.+|+..+..+...+.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433333
No 68
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=46.22 E-value=48 Score=31.69 Aligned_cols=43 Identities=12% Similarity=0.133 Sum_probs=27.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHh
Q 022289 87 QQLCDHYDLCFSRLQAITRELETLRQQNADLRLANARLLKIIT 129 (299)
Q Consensus 87 q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~ 129 (299)
+.++++=..=+..+.+-..++..|+.||.+||..|.+|...+.
T Consensus 48 ~~~~~~p~~~~~~~~~~~~~~~~l~~EN~~Lr~e~~~l~~~~~ 90 (283)
T TIGR00219 48 YYIQNRPREVFDGISENLKDVNNLEYENYKLRQELLKKNQQLE 90 (283)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444556666677778888888888887777744443
No 69
>PRK10722 hypothetical protein; Provisional
Probab=46.21 E-value=28 Score=33.35 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=31.6
Q ss_pred HHHHHHHH-HHHHHHHhhhhhHHHhhHHHHHHHhhhh
Q 022289 97 FSRLQAIT-RELETLRQQNADLRLANARLLKIITGSF 132 (299)
Q Consensus 97 l~rL~~~~-~E~~~Lr~En~~Lr~~N~~L~~~l~~~~ 132 (299)
+.||+..+ ++++.||+++.+|+.....+.+.|+-|+
T Consensus 167 y~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLT 203 (247)
T PRK10722 167 YQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLT 203 (247)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36887666 4899999999999999999999999887
No 70
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=45.15 E-value=11 Score=30.83 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhh
Q 022289 99 RLQAITRELETLRQQNADLRLANARLLKIITGSF 132 (299)
Q Consensus 99 rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~ 132 (299)
.|...+.+++.|..||.+|+..+.+|...|..+.
T Consensus 26 fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~ 59 (131)
T PF05103_consen 26 FLDELAEELERLQRENAELKEEIEELQAQLEELR 59 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3556667777777788777777777776666654
No 71
>PRK10884 SH3 domain-containing protein; Provisional
Probab=44.79 E-value=1.2e+02 Score=27.92 Aligned_cols=30 Identities=10% Similarity=0.128 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhhhhhHHHhhHHHHHHHhhh
Q 022289 102 AITRELETLRQQNADLRLANARLLKIITGS 131 (299)
Q Consensus 102 ~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~ 131 (299)
+...+++.+..+..+|...|..|...|..+
T Consensus 122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~ 151 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEENQKLKNQLIVA 151 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444433
No 72
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=44.21 E-value=9.6 Score=40.07 Aligned_cols=23 Identities=35% Similarity=0.844 Sum_probs=19.6
Q ss_pred ccCccccccCCcCcccccccccc
Q 022289 228 ELCNKWQETGSCPYGDYCQFAHD 250 (299)
Q Consensus 228 eLCr~F~~~G~C~yGDrCrFAH~ 250 (299)
.-|+.|...|.|+||-.|+|+-.
T Consensus 115 ~~Cp~f~s~G~Cp~G~~CRFl~a 137 (614)
T KOG2333|consen 115 PSCPVFESLGFCPYGFKCRFLGA 137 (614)
T ss_pred CccceeeccccCCccceeehhhc
Confidence 46888988899999999999843
No 73
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=43.94 E-value=60 Score=23.88 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=10.7
Q ss_pred HHHHHHhhhhhHHHhhHHHHHHHh
Q 022289 106 ELETLRQQNADLRLANARLLKIIT 129 (299)
Q Consensus 106 E~~~Lr~En~~Lr~~N~~L~~~l~ 129 (299)
+++.|-.||..|+..+..|...+.
T Consensus 34 ~~~~L~~en~~L~~~~~~L~~~~~ 57 (64)
T PF00170_consen 34 KVEELESENEELKKELEQLKKEIQ 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 74
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=43.80 E-value=23 Score=38.20 Aligned_cols=22 Identities=27% Similarity=0.608 Sum_probs=16.0
Q ss_pred ccCccccccCCcCccccccccccCCC
Q 022289 228 ELCNKWQETGSCPYGDYCQFAHDFTE 253 (299)
Q Consensus 228 eLCr~F~~~G~C~yGDrCrFAH~~~E 253 (299)
..|.+|. .|. +..|.|+|....
T Consensus 545 ~~Cky~~---~Ct-~a~Ce~~HPtaa 566 (681)
T KOG3702|consen 545 TRCKYGP---ACT-SAECEFAHPTAA 566 (681)
T ss_pred ccccCCC---cCC-chhhhhcCCcch
Confidence 5677776 477 788889887654
No 75
>PHA03011 hypothetical protein; Provisional
Probab=41.35 E-value=96 Score=26.52 Aligned_cols=48 Identities=21% Similarity=0.128 Sum_probs=34.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 022289 72 ATEHRLQQARLILEYQQLCDHYDLCFSRLQAITRELETLRQQNADLRL 119 (299)
Q Consensus 72 ~t~~rl~~arl~l~~q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~ 119 (299)
-.|-|+|--.|..+||-+.|--..-+--++|-.+|+--||-|-+.|+-
T Consensus 66 ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~ 113 (120)
T PHA03011 66 LDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKE 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 344555666666666666666566667788889999999999988874
No 76
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=40.73 E-value=1.6e+02 Score=24.35 Aligned_cols=52 Identities=23% Similarity=0.367 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhh
Q 022289 77 LQQARLILEYQQLCDHYDLCF-SRLQAITRELETLRQQNADLRLANARLLKIITGS 131 (299)
Q Consensus 77 l~~arl~l~~q~~~~ry~lcl-~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~ 131 (299)
+++|-|++||=-=+.. || ..+.....++..+..|+..|+..+..+...|..+
T Consensus 61 frLaQl~ieYLl~~q~---~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 61 FRLAQLSIEYLLHCQE---YLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888887221111 11 1244555566666666666666666666665554
No 77
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.48 E-value=21 Score=35.51 Aligned_cols=30 Identities=30% Similarity=0.910 Sum_probs=24.7
Q ss_pred ccccccccCc-cccCCCCCCccCCCCCccCc
Q 022289 265 TEVCRMVLSG-GICPYGHRCHFRHSLTEQER 294 (299)
Q Consensus 265 T~~Ck~F~~~-G~CpyG~rCrFaH~~~elrr 294 (299)
...|++|... |.||+|..|.|.|.......
T Consensus 249 ~~~c~yf~~~~g~cPf~s~~~y~h~~~~~~~ 279 (344)
T KOG1039|consen 249 AKDCKYFSQGLGSCPFGSKCFYKHLLPSGAS 279 (344)
T ss_pred ccchhhhcCCCCCCCCCCccccccccccccc
Confidence 5689999854 78999999999998876553
No 78
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=39.00 E-value=98 Score=23.94 Aligned_cols=31 Identities=26% Similarity=0.261 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhhHHH
Q 022289 94 DLCFSRLQAITRELETLRQQNADLRLANARL 124 (299)
Q Consensus 94 ~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L 124 (299)
+.-+.+|.+|-.|+..|+.|+..|+-.|.++
T Consensus 36 d~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 36 DSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667777777777777777777765543
No 79
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=38.53 E-value=62 Score=23.25 Aligned_cols=26 Identities=27% Similarity=0.412 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhHHHH
Q 022289 100 LQAITRELETLRQQNADLRLANARLL 125 (299)
Q Consensus 100 L~~~~~E~~~Lr~En~~Lr~~N~~L~ 125 (299)
..+...++..|..||..|+..+..|.
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666777777777766666554
No 80
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=37.90 E-value=1.4e+02 Score=27.66 Aligned_cols=53 Identities=15% Similarity=0.085 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhh
Q 022289 80 ARLILEYQQLCDHYDLCFSRLQAITRELETLRQQNADLRLANARLLKIITGSF 132 (299)
Q Consensus 80 arl~l~~q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~ 132 (299)
..++--++.+++....=+.-.-+.......|+.||.+|+.+|.+|...+..+.
T Consensus 44 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~ 96 (276)
T PRK13922 44 GDVVSPVQRVVNAPREFVSGVFESLASLFDLREENEELKKELLELESRLQELE 96 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666667777778888999999999999999988887553
No 81
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=36.55 E-value=18 Score=36.39 Aligned_cols=24 Identities=25% Similarity=0.768 Sum_probs=13.2
Q ss_pred cccCccccccCCcCccccccccccC
Q 022289 227 TELCNKWQETGSCPYGDYCQFAHDF 251 (299)
Q Consensus 227 TeLCr~F~~~G~C~yGDrCrFAH~~ 251 (299)
..+|.+|. .|.|+.|..|-|-|..
T Consensus 161 p~Icsf~v-~geckRG~ec~yrhEk 184 (377)
T KOG0153|consen 161 PHICSFFV-KGECKRGAECPYRHEK 184 (377)
T ss_pred Ccccccee-eccccccccccccccC
Confidence 34555555 4455555555555543
No 82
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=35.62 E-value=2.1e+02 Score=22.15 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=10.8
Q ss_pred HHHHHhhhhhHHHhhHHHHHHH
Q 022289 107 LETLRQQNADLRLANARLLKII 128 (299)
Q Consensus 107 ~~~Lr~En~~Lr~~N~~L~~~l 128 (299)
|.....||.+|+..|..|.+.|
T Consensus 42 l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 42 LGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555554443
No 83
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=35.28 E-value=49 Score=34.45 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhhhhhHHH
Q 022289 100 LQAITRELETLRQQNADLRL 119 (299)
Q Consensus 100 L~~~~~E~~~Lr~En~~Lr~ 119 (299)
|+.+..|=+.|+.||.+||.
T Consensus 75 ~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 75 LAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555544
No 84
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=35.11 E-value=1e+02 Score=28.84 Aligned_cols=90 Identities=19% Similarity=0.208 Sum_probs=66.3
Q ss_pred ccccchhhhhcccCCCCCC----------CCCCCCc-----hhhhhhhhhhHH--HHHHHHHHHHHHHhhHHHHHHHHHH
Q 022289 40 DFDVDFSSIYNSVFPPRSS----------LSPSLIT-----DDRHRMATEHRL--QQARLILEYQQLCDHYDLCFSRLQA 102 (299)
Q Consensus 40 ~~~~~f~sly~s~~~~~~~----------ls~s~~~-----~~~~~~~t~~rl--~~arl~l~~q~~~~ry~lcl~rL~~ 102 (299)
.|...+.+||.+++.|--+ +|.+... |+-.....-+.+ .+.+|..+.|.+-.-|.-.+.|+++
T Consensus 138 ~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~ 217 (281)
T PF06472_consen 138 KFTESSLSLFLGLLKPILDLISFSVILWSISGWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRE 217 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHH
Confidence 6888999999999888665 2222111 221222222333 6788888899999999999999999
Q ss_pred HHHHHHHHHhhhhhHHHhhHHHHHHHh
Q 022289 103 ITRELETLRQQNADLRLANARLLKIIT 129 (299)
Q Consensus 103 ~~~E~~~Lr~En~~Lr~~N~~L~~~l~ 129 (299)
-+.|+|-.+-|+.|-+..+..+...+.
T Consensus 218 naE~IA~~~Ge~~E~~~l~~~f~~l~~ 244 (281)
T PF06472_consen 218 NAESIAFYRGESRERRRLDRRFDALID 244 (281)
T ss_pred hHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999887777766544
No 85
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=35.00 E-value=2e+02 Score=26.56 Aligned_cols=43 Identities=26% Similarity=0.309 Sum_probs=34.4
Q ss_pred HHHHHhhHHHHHHHHHHHH-HHHHHHHhhhhhHHHhhHHHHHHHhhhh
Q 022289 86 YQQLCDHYDLCFSRLQAIT-RELETLRQQNADLRLANARLLKIITGSF 132 (299)
Q Consensus 86 ~q~~~~ry~lcl~rL~~~~-~E~~~Lr~En~~Lr~~N~~L~~~l~~~~ 132 (299)
--|--.|| .||+..+ .|+++||+++..|+..=.+-.+-|+-|+
T Consensus 114 L~eEr~Ry----~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLT 157 (179)
T PF13942_consen 114 LSEERARY----QRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLT 157 (179)
T ss_pred HHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 35555666 6888776 5999999999999998888888888776
No 86
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=34.76 E-value=83 Score=25.82 Aligned_cols=34 Identities=12% Similarity=0.271 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHHH----hhHHHHHHHhhh
Q 022289 98 SRLQAITRELETLRQQNADLRL----ANARLLKIITGS 131 (299)
Q Consensus 98 ~rL~~~~~E~~~Lr~En~~Lr~----~N~~L~~~l~~~ 131 (299)
.++.+...|+.+|.+||..|+. +|.+=..+|.+|
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5788888999999999998887 777766666665
No 87
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=34.50 E-value=35 Score=36.90 Aligned_cols=16 Identities=25% Similarity=0.829 Sum_probs=10.6
Q ss_pred CcCccc-----cccccccCCC
Q 022289 238 SCPYGD-----YCQFAHDFTE 253 (299)
Q Consensus 238 ~C~yGD-----rCrFAH~~~E 253 (299)
.|++|. .|.|.|+...
T Consensus 587 ~Ck~~~kCtasDC~~sH~~~~ 607 (681)
T KOG3702|consen 587 GCKFGKKCTASDCNYSHAGRR 607 (681)
T ss_pred ccccccccccccCcccccCCC
Confidence 466663 5778887655
No 88
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=34.14 E-value=20 Score=36.06 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=9.8
Q ss_pred cchhhhhcccCCCCCC
Q 022289 43 VDFSSIYNSVFPPRSS 58 (299)
Q Consensus 43 ~~f~sly~s~~~~~~~ 58 (299)
++|+.|-.+-+.+.|-
T Consensus 17 ~dfPiiCe~CLGdnpy 32 (377)
T KOG0153|consen 17 ADFPIICETCLGDNPY 32 (377)
T ss_pred cCccHHHHHhcCCCce
Confidence 4566666666666653
No 89
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=33.87 E-value=2.5e+02 Score=22.55 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 022289 75 HRLQQARLILEYQQLCDHYDLCFSRLQAITRELETLRQQNADLRL 119 (299)
Q Consensus 75 ~rl~~arl~l~~q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~ 119 (299)
.+-..++||.|-.++-+=-+.=+.|..+.-.|-+.|+.||.=|.-
T Consensus 14 ~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~ 58 (80)
T PF10224_consen 14 EKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQ 58 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333458888888888888899999999999999999999999985
No 90
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=33.72 E-value=1.2e+02 Score=24.33 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=31.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 022289 72 ATEHRLQQARLILEYQQLCDHYDLCFSRLQAITRELETL 110 (299)
Q Consensus 72 ~t~~rl~~arl~l~~q~~~~ry~lcl~rL~~~~~E~~~L 110 (299)
..++++++.+-+| +|-.-=.-.|..||..|..+|..+
T Consensus 38 ~de~~iKkq~~vl--~Et~~mipd~~~RL~~a~~~L~~~ 74 (90)
T PF02970_consen 38 EDEYDIKKQEEVL--EETKMMIPDCQQRLEKAVEDLEEF 74 (90)
T ss_dssp TSHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4678998888888 666666789999999999999887
No 91
>PLN03188 kinesin-12 family protein; Provisional
Probab=33.63 E-value=1.2e+02 Score=35.39 Aligned_cols=53 Identities=23% Similarity=0.330 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHH---------------------------HHHHHHHHHHhh----hhhHHHhhHHHHHH
Q 022289 79 QARLILEYQQLCDHYDLCFSRLQ---------------------------AITRELETLRQQ----NADLRLANARLLKI 127 (299)
Q Consensus 79 ~arl~l~~q~~~~ry~lcl~rL~---------------------------~~~~E~~~Lr~E----n~~Lr~~N~~L~~~ 127 (299)
-||++-||-||-+.|..=|.|=+ ..++|+.+||-| +.-||-+|.-|.-.
T Consensus 1109 har~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~q 1188 (1320)
T PLN03188 1109 HARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQ 1188 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 48999999999999987776532 235677777755 34455568888777
Q ss_pred Hhhh
Q 022289 128 ITGS 131 (299)
Q Consensus 128 l~~~ 131 (299)
|-.-
T Consensus 1189 lrdt 1192 (1320)
T PLN03188 1189 LRDT 1192 (1320)
T ss_pred HhhH
Confidence 6544
No 92
>PF14645 Chibby: Chibby family
Probab=33.53 E-value=52 Score=27.86 Aligned_cols=29 Identities=28% Similarity=0.140 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhhhhHHHhhHHHHHHHhhh
Q 022289 103 ITRELETLRQQNADLRLANARLLKIITGS 131 (299)
Q Consensus 103 ~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~ 131 (299)
...|...||.||..|+-+|+-|...+.+|
T Consensus 69 ~~~~~~~l~~~n~~L~EENN~Lklk~elL 97 (116)
T PF14645_consen 69 DGEENQRLRKENQQLEEENNLLKLKIELL 97 (116)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777777766666655
No 93
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=33.17 E-value=1.6e+02 Score=26.71 Aligned_cols=28 Identities=32% Similarity=0.312 Sum_probs=14.8
Q ss_pred HHHHHHHhhhhhHHHhhHHHHHHHhhhh
Q 022289 105 RELETLRQQNADLRLANARLLKIITGSF 132 (299)
Q Consensus 105 ~E~~~Lr~En~~Lr~~N~~L~~~l~~~~ 132 (299)
.|...|+.|+.+|+..|..|...+..|.
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~ 131 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLR 131 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555554443
No 94
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=32.79 E-value=2.8e+02 Score=23.08 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhhc
Q 022289 96 CFSRLQAITRELETLRQQNADLRLANARLLKIITGSFH 133 (299)
Q Consensus 96 cl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~~ 133 (299)
=+.........++++..||..|...|..|...|+.|..
T Consensus 48 ~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~d 85 (117)
T COG2919 48 GAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKD 85 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444555566668888888888888888888888854
No 95
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=32.01 E-value=2.1e+02 Score=21.02 Aligned_cols=45 Identities=20% Similarity=0.270 Sum_probs=21.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHH
Q 022289 72 ATEHRLQQARLILEYQQLCDHYDLCFSRLQAITRELETLRQQNADLRLANARLLK 126 (299)
Q Consensus 72 ~t~~rl~~arl~l~~q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~ 126 (299)
|...|.+....+.+-++-++ ....|...|+.++..|.-.+..|..
T Consensus 17 Ar~~R~RKk~~~~~Le~~~~----------~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 17 ARRSRQRKKQYIEELEEKVE----------ELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555544433333 3334444455555555544444443
No 96
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=31.92 E-value=2.2e+02 Score=21.40 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=35.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHh
Q 022289 88 QLCDHYDLCFSRLQAITRELETLRQQNADLRLANARLLKIIT 129 (299)
Q Consensus 88 ~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~ 129 (299)
.+=+-.+.-|.|-...-.+-++|-+|+..|+..|.+|..+|.
T Consensus 16 ~~W~~L~~~l~rY~~vL~~R~~l~~e~~~L~~qN~eLr~lLk 57 (60)
T PF14775_consen 16 RLWDALENFLKRYNKVLLDRAALIQEKESLEQQNEELRSLLK 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667888888889999999999999999999998875
No 97
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=31.31 E-value=58 Score=23.31 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=13.0
Q ss_pred HHHHhhhhhHHHhhHHHHHHHhhhh
Q 022289 108 ETLRQQNADLRLANARLLKIITGSF 132 (299)
Q Consensus 108 ~~Lr~En~~Lr~~N~~L~~~l~~~~ 132 (299)
++|+.|+..|..+|..|...|..|.
T Consensus 15 d~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 15 DSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555443
No 98
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=31.08 E-value=2e+02 Score=22.29 Aligned_cols=37 Identities=27% Similarity=0.331 Sum_probs=14.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHH
Q 022289 89 LCDHYDLCFSRLQAITRELETLRQQNADLRLANARLL 125 (299)
Q Consensus 89 ~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~ 125 (299)
+.++-+.=+.+....-.|=+.||.+.+.+..++..|.
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ 41 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLL 41 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444444444444443
No 99
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.59 E-value=2.8e+02 Score=22.35 Aligned_cols=52 Identities=15% Similarity=0.239 Sum_probs=34.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhhccc
Q 022289 84 LEYQQLCDHYDLCFSRLQAITRELETLRQQNADLRLANARLLKIITGSFHRM 135 (299)
Q Consensus 84 l~~q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~~~~ 135 (299)
++-.++-+...---.-.+++..-.++|++||..|.-.-.-...||..|-||.
T Consensus 25 mEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 25 MEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445555554443344555666667888888888888777788887777664
No 100
>smart00574 POX domain associated with HOX domains.
Probab=30.58 E-value=2.1e+02 Score=25.41 Aligned_cols=39 Identities=13% Similarity=0.334 Sum_probs=32.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 022289 72 ATEHRLQQARLILEYQQLCDHYDLCFSRLQAITRELETL 110 (299)
Q Consensus 72 ~t~~rl~~arl~l~~q~~~~ry~lcl~rL~~~~~E~~~L 110 (299)
.-|+..+.++|+-=-|+|..||+.|+..++..+.=-+++
T Consensus 72 r~e~q~kk~kLl~mL~eVd~RY~qY~~qmq~v~ssFe~v 110 (140)
T smart00574 72 RQELQRKKAKLLSMLEEVDRRYKHYYEQMQTVVSSFDQA 110 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777889998888999999999999999887765554
No 101
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=30.22 E-value=1.8e+02 Score=30.52 Aligned_cols=53 Identities=21% Similarity=0.330 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHH---------------------------HHHHHHHHHHhh----hhhHHHhhHHHHHH
Q 022289 79 QARLILEYQQLCDHYDLCFSRLQ---------------------------AITRELETLRQQ----NADLRLANARLLKI 127 (299)
Q Consensus 79 ~arl~l~~q~~~~ry~lcl~rL~---------------------------~~~~E~~~Lr~E----n~~Lr~~N~~L~~~ 127 (299)
-||++-||-||-++|..=+.+=+ ..++|+.+||-| +.-||-+|.-|.-.
T Consensus 339 haR~lEqYadLqEk~~~Ll~~Hr~i~egI~dVKkaAakAg~kG~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~Q 418 (488)
T PF06548_consen 339 HARMLEQYADLQEKHNDLLARHRRIMEGIEDVKKAAAKAGVKGAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQ 418 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 48999999999999988776533 345677777763 33455577777766
Q ss_pred Hhhh
Q 022289 128 ITGS 131 (299)
Q Consensus 128 l~~~ 131 (299)
|..-
T Consensus 419 LrDT 422 (488)
T PF06548_consen 419 LRDT 422 (488)
T ss_pred HHhH
Confidence 6543
No 102
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=30.09 E-value=47 Score=28.46 Aligned_cols=35 Identities=23% Similarity=0.106 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhhc
Q 022289 99 RLQAITRELETLRQQNADLRLANARLLKIITGSFH 133 (299)
Q Consensus 99 rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~~ 133 (299)
.|-.+.+|+.+|++--.+|=-+|..|....+-|-.
T Consensus 16 ~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~ 50 (114)
T COG4467 16 QLGVLLAELGGLKQHLGSLVEENTALRLENEKLRE 50 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHH
Confidence 45667778888888888888888888777766644
No 103
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=29.86 E-value=95 Score=24.42 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhhhhhHHHhhHHHHHHHhhh
Q 022289 101 QAITRELETLRQQNADLRLANARLLKIITGS 131 (299)
Q Consensus 101 ~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~ 131 (299)
+....|++.|..|...|..+|..|...++.+
T Consensus 38 ~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 38 RQLFYELQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666666666666666665555555
No 104
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=29.85 E-value=96 Score=26.11 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhh
Q 022289 98 SRLQAITRELETLRQQNADLRLANARLLKIITGSF 132 (299)
Q Consensus 98 ~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~ 132 (299)
..|..--.++-.+.+|++-|..-|..|.+|++.|-
T Consensus 33 e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ 67 (102)
T PF10205_consen 33 EQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQ 67 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777888999999999999999999885
No 105
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=29.78 E-value=52 Score=24.54 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=10.0
Q ss_pred HHHHHHHHHhhhhhHHH
Q 022289 103 ITRELETLRQQNADLRL 119 (299)
Q Consensus 103 ~~~E~~~Lr~En~~Lr~ 119 (299)
|..+++.|+.||..||.
T Consensus 27 a~~rl~~l~~EN~~Lr~ 43 (52)
T PF12808_consen 27 ARKRLSKLEGENRLLRA 43 (52)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666666666654
No 106
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=29.78 E-value=2e+02 Score=28.11 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhhhhHHH-------hhHHHHHHHhhhhc
Q 022289 100 LQAITRELETLRQQNADLRL-------ANARLLKIITGSFH 133 (299)
Q Consensus 100 L~~~~~E~~~Lr~En~~Lr~-------~N~~L~~~l~~~~~ 133 (299)
+.|.+.|-+-|+.||..||. .|.+|..+|+++-+
T Consensus 99 i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~ 139 (292)
T KOG4005|consen 99 IKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQ 139 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34566666777777777776 55666666766543
No 107
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=29.74 E-value=1.2e+02 Score=24.63 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhh
Q 022289 98 SRLQAITRELETLRQQNADLRLANARLLKIITGS 131 (299)
Q Consensus 98 ~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~ 131 (299)
++++.|++.++-|+-|..+|+-.|..|...+..+
T Consensus 11 ~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~ 44 (79)
T PRK15422 11 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNA 44 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888888888888887766554
No 108
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=29.25 E-value=1.4e+02 Score=28.07 Aligned_cols=33 Identities=9% Similarity=0.020 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhhc
Q 022289 101 QAITRELETLRQQNADLRLANARLLKIITGSFH 133 (299)
Q Consensus 101 ~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~~ 133 (299)
.|....++.|++|.++||=.+..+...|..+..
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 455566777777777777766666666665543
No 109
>COG4951 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.51 E-value=29 Score=34.26 Aligned_cols=18 Identities=33% Similarity=0.379 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 022289 99 RLQAITRELETLRQQNAD 116 (299)
Q Consensus 99 rL~~~~~E~~~Lr~En~~ 116 (299)
+|.+..+|+++||+||+.
T Consensus 2 ~~~~~~~e~aa~r~e~~~ 19 (361)
T COG4951 2 VHKSDSDELAALRAENAR 19 (361)
T ss_pred ccchhhHHHHHHHHHhhh
Confidence 356778999999999876
No 110
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=27.55 E-value=2.9e+02 Score=27.65 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhhccccCCCCC
Q 022289 78 QQARLILEYQQLCDHYDLCFSRLQAITRELETLRQQNADLRLANARLLKIITGSFHRMTEDIPP 141 (299)
Q Consensus 78 ~~arl~l~~q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~~~~~~~~~~ 141 (299)
|+-.++.+|+.+.+++.-=-.....++.-+..+-+|.++|--....+...+..-+.+++.+.+.
T Consensus 267 qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPl 330 (359)
T PF10498_consen 267 QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPL 330 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHH
Confidence 6777888888888887777777777777777777777777777777777777776666665543
No 111
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=26.94 E-value=1.2e+02 Score=28.87 Aligned_cols=43 Identities=19% Similarity=0.300 Sum_probs=30.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHH------Hhhhhh-HHHhhHHHHHHHh
Q 022289 87 QQLCDHYDLCFSRLQAITRELETL------RQQNAD-LRLANARLLKIIT 129 (299)
Q Consensus 87 q~~~~ry~lcl~rL~~~~~E~~~L------r~En~~-Lr~~N~~L~~~l~ 129 (299)
.---+|-+-||+.|.+.+.|+-.. +.|++| |-.+-.||..+-.
T Consensus 41 KkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~ 90 (250)
T KOG4304|consen 41 KKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQR 90 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhc
Confidence 345678889999999999997654 667666 4456666655443
No 112
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=26.85 E-value=2.8e+02 Score=25.92 Aligned_cols=56 Identities=20% Similarity=0.307 Sum_probs=32.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHH---HHHHHhhhhc
Q 022289 71 MATEHRLQQARLILEYQQLCDHYDLCFSRLQAITRELETLRQQNADLRLANAR---LLKIITGSFH 133 (299)
Q Consensus 71 ~~t~~rl~~arl~l~~q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~---L~~~l~~~~~ 133 (299)
.|-++|+-|-..+.+-..|.. .+-..-.|++.|+.||.+|.....+ |+..|..|.+
T Consensus 112 lAE~RR~AL~eaL~ENe~Lh~-------~ie~~~eEi~~lk~en~~L~elae~~~~la~~ie~l~~ 170 (200)
T PF07412_consen 112 LAEERRKALEEALEENEKLHK-------EIEQKDEEIAKLKEENEELKELAEHVQYLAEVIERLTG 170 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455544444443333322 3445567889999999999988774 4444554544
No 113
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=26.45 E-value=3.3e+02 Score=23.04 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhh
Q 022289 81 RLILEYQQLCDHYDLCFSRLQAITRELETLRQQNADLRLANARLLKIITGSF 132 (299)
Q Consensus 81 rl~l~~q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~ 132 (299)
.|+.+++.-.++.+.=...++....|++.|...+..|...+..+.+.+..+.
T Consensus 42 ~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~ 93 (151)
T PF11559_consen 42 DLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAE 93 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777766666666666666666666666666666666666665544
No 114
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=25.12 E-value=1.8e+02 Score=22.06 Aligned_cols=31 Identities=13% Similarity=0.334 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhhHHHHHHHh
Q 022289 99 RLQAITRELETLRQQNADLRLANARLLKIIT 129 (299)
Q Consensus 99 rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~ 129 (299)
.|-.....++.+|.||.+||-...+|...+-
T Consensus 8 ~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 8 ELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566688888888888887666655443
No 115
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=24.75 E-value=1e+02 Score=29.28 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhh
Q 022289 98 SRLQAITRELETLRQQNADLRLANARLLKIITGS 131 (299)
Q Consensus 98 ~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~ 131 (299)
-|.++.-.|.++||+++.+|+..+..|...+...
T Consensus 222 ~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~ 255 (269)
T KOG3119|consen 222 HRVAELEKENEALRTQVEQLKKELATLRRLFLQL 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566677777777777777777777776666544
No 116
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=24.28 E-value=86 Score=31.27 Aligned_cols=29 Identities=17% Similarity=-0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhHHHhhHHHHHHHhhhh
Q 022289 104 TRELETLRQQNADLRLANARLLKIITGSF 132 (299)
Q Consensus 104 ~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~ 132 (299)
+.....|+.||.+||..|..|...+....
T Consensus 56 ~~~y~~L~~EN~~Lk~Ena~L~~~l~~~e 84 (337)
T PRK14872 56 SSHALVLETENFLLKERIALLEERLKSYE 84 (337)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 117
>PF09544 DUF2381: Protein of unknown function (DUF2381); InterPro: IPR011754 This family consists of at least 8 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=23.76 E-value=79 Score=30.53 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhHHHh
Q 022289 92 HYDLCFSRLQAITRELETLRQQNADLRLA 120 (299)
Q Consensus 92 ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~ 120 (299)
=++.|-..|.++=.|+..||+||.++|.+
T Consensus 128 s~e~~~~e~~~~r~~~~~~~~e~~R~r~~ 156 (289)
T PF09544_consen 128 SAESCQAELLEARAEAQELREENERLRAE 156 (289)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 36778888888889999999999999873
No 118
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=23.34 E-value=2.1e+02 Score=22.44 Aligned_cols=37 Identities=32% Similarity=0.439 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHH--HHhhh
Q 022289 95 LCFSRLQAITRELETLRQQNADLRLANARLLK--IITGS 131 (299)
Q Consensus 95 lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~--~l~~~ 131 (299)
.-...|.+.-.|...|..||..|+++=..|.. +|+..
T Consensus 39 ~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe~i 77 (97)
T PF04999_consen 39 QLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRIERI 77 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 34455888999999999999999997766653 44444
No 119
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=22.99 E-value=2.2e+02 Score=21.49 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhhc
Q 022289 97 FSRLQAITRELETLRQQNADLRLANARLLKIITGSFH 133 (299)
Q Consensus 97 l~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~~ 133 (299)
|.++...+..++.-.-+..+|+.+..-|.-.|+.+.+
T Consensus 16 La~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE~ 52 (53)
T PF08898_consen 16 LAQMKALAAQAEQQLAEAGDIAAALEKLKAEIAKLEA 52 (53)
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhc
Confidence 4455566666666666666677766666666665543
No 120
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=22.58 E-value=5.8e+02 Score=23.08 Aligned_cols=29 Identities=21% Similarity=0.286 Sum_probs=20.6
Q ss_pred HHHHHHHhhhhhHHHhhHHHHHHHhhhhc
Q 022289 105 RELETLRQQNADLRLANARLLKIITGSFH 133 (299)
Q Consensus 105 ~E~~~Lr~En~~Lr~~N~~L~~~l~~~~~ 133 (299)
.++..|.+||.+||.+=.+-..-|+++-.
T Consensus 70 ~qi~~Lq~EN~eL~~~leEhq~alelIM~ 98 (181)
T PF05769_consen 70 RQIRQLQQENRELRQSLEEHQSALELIMS 98 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888877776666666543
No 121
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=22.24 E-value=2e+02 Score=30.11 Aligned_cols=60 Identities=25% Similarity=0.334 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHH-------HHHH--------HHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhhc
Q 022289 74 EHRLQQARLILEYQQLCDHYDLC-------FSRL--------QAITRELETLRQQNADLRLANARLLKIITGSFH 133 (299)
Q Consensus 74 ~~rl~~arl~l~~q~~~~ry~lc-------l~rL--------~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~~ 133 (299)
+.|-+++.|+.|-..+....+-= =.|+ .+...|.+.|..|...|.-.=.+|..+|..+..
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~~ 144 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGVLT 144 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 35556666665555555444411 1111 233446666666666666666667777755543
No 122
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.99 E-value=1.7e+02 Score=25.34 Aligned_cols=55 Identities=18% Similarity=0.117 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHhhhhhHHHhhHHHHHHHhhhhc
Q 022289 79 QARLILEYQQLCDHYDLCFSRLQAITREL--ETLRQQNADLRLANARLLKIITGSFH 133 (299)
Q Consensus 79 ~arl~l~~q~~~~ry~lcl~rL~~~~~E~--~~Lr~En~~Lr~~N~~L~~~l~~~~~ 133 (299)
...|--|.+++...+..=-+.|+....+. +.|+.+..+|...+..|..+|..|.+
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555554444444555554443 56777777888888888888887765
No 123
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=21.82 E-value=75 Score=34.00 Aligned_cols=30 Identities=40% Similarity=0.533 Sum_probs=24.9
Q ss_pred HhhHHHHH-HHHHHHHHHHHHHHhhhhhHHH
Q 022289 90 CDHYDLCF-SRLQAITRELETLRQQNADLRL 119 (299)
Q Consensus 90 ~~ry~lcl-~rL~~~~~E~~~Lr~En~~Lr~ 119 (299)
-.-|.+-| .||+++-.|-+.||.||+-||-
T Consensus 300 KKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~ 330 (655)
T KOG4343|consen 300 KKEYMLGLEARLQALLSENEQLKKENATLKR 330 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34466555 6999999999999999999985
No 124
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=21.71 E-value=5.1e+02 Score=22.55 Aligned_cols=59 Identities=19% Similarity=0.101 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhh
Q 022289 73 TEHRLQQARLILEYQQLCDHYDLCFSRLQAITRELETLRQQNADLRLANARLLKIITGS 131 (299)
Q Consensus 73 t~~rl~~arl~l~~q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~ 131 (299)
|-+|=.+--+..+...+......+-..+...=.|+..+..|...+|..|..|.....++
T Consensus 80 ~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~ 138 (177)
T PF13870_consen 80 THVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLL 138 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33455566667777777777778888888888888888888888888888877665555
No 125
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=21.69 E-value=1e+02 Score=29.11 Aligned_cols=50 Identities=26% Similarity=0.280 Sum_probs=42.3
Q ss_pred CCCCcccccccccccccCCCcccCCCCCcccccccchhhhhcccCCCCCC
Q 022289 9 SSPSDAKTSMTTATATTSSSLTSDFDFDFDFDFDVDFSSIYNSVFPPRSS 58 (299)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~sly~s~~~~~~~ 58 (299)
++.++|..++.....+.|.+++.+-.++-+.+...++.+.|.+...+...
T Consensus 1 ~s~~~S~~S~~S~~~~~s~~~~~~~~~~~~~~s~~s~~~~~~~~~~~~~~ 50 (264)
T PF13904_consen 1 QSSSSSTSSLLSPLSHQSSPSSSDRNEDCSKESTTSWCSMYESAKESESS 50 (264)
T ss_pred CCcccCcccccCCCccccCCCccccccccCccccchhhccccccccccCc
Confidence 46788888998888899999999999998888888999999988665553
No 126
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=21.64 E-value=3.4e+02 Score=31.38 Aligned_cols=57 Identities=28% Similarity=0.359 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhhc
Q 022289 77 LQQARLILEYQQLCDHYDLCFSRLQAITRELETLRQQNADLRLANARLLKIITGSFH 133 (299)
Q Consensus 77 l~~arl~l~~q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~~ 133 (299)
+-+.||.-..-++-+-|--|...+-...+-++-|+.+-.-|--+|.||.+.|..|-.
T Consensus 502 ~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 502 LELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 356677777777777788888888888888888888888888899999999998874
No 127
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=21.64 E-value=99 Score=24.27 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=18.8
Q ss_pred HHHHhhhhhHHHhhHHHHHHHhh
Q 022289 108 ETLRQQNADLRLANARLLKIITG 130 (299)
Q Consensus 108 ~~Lr~En~~Lr~~N~~L~~~l~~ 130 (299)
..||.|+.+|+-+|.-|...+-.
T Consensus 21 s~lr~eiealkY~N~yL~~~~v~ 43 (66)
T PF07438_consen 21 SELRKEIEALKYMNDYLFDQFVR 43 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 35889999999999999887644
No 128
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=21.32 E-value=5.5e+02 Score=23.94 Aligned_cols=47 Identities=23% Similarity=0.291 Sum_probs=40.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhh
Q 022289 86 YQQLCDHYDLCFSRLQAITRELETLRQQNADLRLANARLLKIITGSF 132 (299)
Q Consensus 86 ~q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~ 132 (299)
-.++-.+|+-......++=.|+..||.+..+..+++.+|-..|..|.
T Consensus 84 ~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~ 130 (312)
T PF00038_consen 84 LEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLK 130 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHH
Confidence 34777888888888889999999999999999999999988887775
No 129
>smart00338 BRLZ basic region leucin zipper.
Probab=21.00 E-value=2e+02 Score=21.05 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhhHHHHHHH
Q 022289 99 RLQAITRELETLRQQNADLRLANARLLKII 128 (299)
Q Consensus 99 rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l 128 (299)
++.+...|...|+.+...|+..|..|...+
T Consensus 34 ~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 34 KVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555566666666666666666655443
No 130
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=20.91 E-value=4.1e+02 Score=20.76 Aligned_cols=27 Identities=22% Similarity=0.151 Sum_probs=20.1
Q ss_pred HHHHHhhhhhHHHhhHHHHHHHhhhhc
Q 022289 107 LETLRQQNADLRLANARLLKIITGSFH 133 (299)
Q Consensus 107 ~~~Lr~En~~Lr~~N~~L~~~l~~~~~ 133 (299)
.+.-.+||+.|++-|..|+..++.|.+
T Consensus 37 ~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ 63 (70)
T PF04899_consen 37 FEQTSQENAALSEQVNNLSQQVQRLSE 63 (70)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456777888888888888888764
No 131
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=20.76 E-value=1.5e+02 Score=22.54 Aligned_cols=30 Identities=30% Similarity=0.426 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhhHHHHH
Q 022289 97 FSRLQAITRELETLRQQNADLRLANARLLK 126 (299)
Q Consensus 97 l~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~ 126 (299)
...++++-.|++.|..||.+|+.+=..|+.
T Consensus 30 ~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 30 NNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456788888999999999999997766653
No 132
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=20.59 E-value=1.3e+02 Score=28.44 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhhc
Q 022289 99 RLQAITRELETLRQQNADLRLANARLLKIITGSFH 133 (299)
Q Consensus 99 rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~~ 133 (299)
.|+..-.++..||.|...|+..|..|-..|--|..
T Consensus 101 elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 101 ELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46677788999999999999999999999988863
No 133
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.46 E-value=3.5e+02 Score=21.69 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 022289 79 QARLILEYQQLCDHYDLCFSRLQAITRELETLRQQNADL 117 (299)
Q Consensus 79 ~arl~l~~q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~L 117 (299)
+...+.+|++-.+.+.--+.+|.....|+..++.+...|
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l 42 (129)
T cd00890 4 LAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETL 42 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667777777777777777777777777776655554
No 134
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=20.17 E-value=3e+02 Score=23.94 Aligned_cols=38 Identities=18% Similarity=0.373 Sum_probs=30.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 022289 72 ATEHRLQQARLILEYQQLCDHYDLCFSRLQAITRELET 109 (299)
Q Consensus 72 ~t~~rl~~arl~l~~q~~~~ry~lcl~rL~~~~~E~~~ 109 (299)
.-|+..+.++|+-=-|||..||..|+..++..+.=-++
T Consensus 72 ~~e~q~kK~KLl~mL~eVd~RY~qY~~Qmq~VvssFe~ 109 (140)
T PF07526_consen 72 RQELQRKKAKLLSMLDEVDRRYRQYYDQMQAVVSSFEA 109 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566678999888899999999999999887664444
Done!