Query 022289
Match_columns 299
No_of_seqs 168 out of 1148
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 03:04:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022289.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022289hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m9o_A Tristetraproline; Cys3H 99.8 1E-19 3.6E-24 137.2 3.4 72 220-291 5-76 (77)
2 2cqe_A KIAA1064 protein; CCCH 99.3 4.9E-13 1.7E-17 107.0 3.4 53 224-291 10-62 (98)
3 2d9n_A Cleavage and polyadenyl 99.3 1E-12 3.5E-17 100.5 4.2 65 222-297 5-69 (77)
4 2rhk_C Cleavage and polyadenyl 99.2 8.2E-12 2.8E-16 94.9 2.7 60 223-293 12-71 (72)
5 3d2q_A Muscleblind-like protei 99.1 1.6E-11 5.6E-16 92.4 2.3 65 224-293 3-68 (70)
6 2e5s_A Otthump00000018578; ZF- 99.0 8.5E-11 2.9E-15 94.3 1.2 64 224-292 17-81 (98)
7 3d2n_A Muscleblind-like protei 98.7 2.8E-09 9.7E-14 83.3 2.5 63 223-292 5-68 (83)
8 2rpp_A Muscleblind-like protei 98.5 3.4E-08 1.2E-12 78.2 3.2 65 221-292 11-76 (89)
9 2d9m_A Zinc finger CCCH-type d 98.4 3.6E-08 1.2E-12 75.3 -0.1 53 219-272 12-65 (69)
10 1m9o_A Tristetraproline; Cys3H 98.1 1.8E-06 6.2E-11 64.5 3.5 36 259-294 6-41 (77)
11 2d9m_A Zinc finger CCCH-type d 97.9 1.2E-06 4.1E-11 66.9 -0.5 34 260-294 15-48 (69)
12 2cqe_A KIAA1064 protein; CCCH 97.0 0.00032 1.1E-08 55.8 3.0 25 263-288 11-35 (98)
13 2d9n_A Cleavage and polyadenyl 97.0 0.00025 8.7E-09 53.7 2.0 31 262-293 7-37 (77)
14 2rhk_C Cleavage and polyadenyl 96.8 0.0003 1E-08 53.1 1.2 30 263-293 14-43 (72)
15 2fc6_A Nuclear, target of EGR1 96.4 0.0007 2.4E-08 48.8 0.5 27 264-290 19-45 (50)
16 2fc6_A Nuclear, target of EGR1 96.2 0.0017 5.8E-08 46.8 1.7 29 224-252 17-45 (50)
17 3u9g_A Zinc finger CCCH-type a 96.2 0.0022 7.4E-08 58.7 2.7 27 226-253 88-118 (229)
18 3u9g_A Zinc finger CCCH-type a 95.7 0.0055 1.9E-07 56.0 3.3 52 221-292 145-200 (229)
19 3d2q_A Muscleblind-like protei 95.5 0.003 1E-07 47.0 0.6 31 223-255 38-68 (70)
20 3d2n_A Muscleblind-like protei 95.3 0.007 2.4E-07 47.0 2.0 27 264-291 8-35 (83)
21 2e5s_A Otthump00000018578; ZF- 95.2 0.0034 1.2E-07 50.1 -0.1 29 263-292 18-47 (98)
22 2rpp_A Muscleblind-like protei 94.1 0.019 6.5E-07 45.2 1.8 27 264-291 16-43 (89)
23 3s9g_A Protein hexim1; cyclin 93.2 0.22 7.5E-06 40.5 6.7 45 79-123 32-90 (104)
24 2yy0_A C-MYC-binding protein; 91.5 0.16 5.3E-06 36.6 3.5 30 104-133 18-47 (53)
25 3u1l_A PRE-mRNA-splicing facto 91.5 0.057 2E-06 48.9 1.4 26 226-252 69-94 (240)
26 3u1l_A PRE-mRNA-splicing facto 91.0 0.044 1.5E-06 49.7 0.1 25 266-291 71-95 (240)
27 2lhn_A Nuclear polyadenylated 89.6 0.055 1.9E-06 42.0 0.0 21 227-251 9-29 (80)
28 2lhn_A Nuclear polyadenylated 82.7 0.28 9.5E-06 38.1 0.0 40 229-289 33-72 (80)
29 2wuj_A Septum site-determining 74.6 2.1 7.3E-05 30.7 2.8 29 100-128 29-57 (57)
30 1no4_A Late, head morphogenesi 70.5 15 0.00053 28.8 7.1 46 87-132 29-74 (97)
31 3v33_A Ribonuclease ZC3H12A; r 64.3 1.6 5.5E-05 39.5 0.4 25 264-291 191-215 (223)
32 2jn6_A Protein CGL2762, transp 62.4 1.8 6.1E-05 32.4 0.3 25 102-126 63-87 (97)
33 1dh3_A Transcription factor CR 61.1 11 0.00037 26.9 4.2 28 100-127 24-51 (55)
34 3m91_A Proteasome-associated A 59.4 32 0.0011 24.4 6.4 42 74-117 8-49 (51)
35 1nkp_B MAX protein, MYC proto- 58.3 15 0.00052 27.4 4.9 35 99-133 48-82 (83)
36 1go4_E MAD1 (mitotic arrest de 57.4 12 0.00042 30.1 4.4 31 100-130 14-44 (100)
37 2jee_A YIIU; FTSZ, septum, coi 55.9 49 0.0017 25.7 7.4 50 85-134 28-77 (81)
38 2dgc_A Protein (GCN4); basic d 54.9 11 0.00038 27.5 3.5 31 98-128 30-60 (63)
39 1deb_A APC protein, adenomatou 54.0 16 0.00054 26.4 4.0 30 103-132 8-37 (54)
40 1hjb_A Ccaat/enhancer binding 52.2 20 0.00067 28.0 4.7 30 102-131 40-69 (87)
41 1go4_E MAD1 (mitotic arrest de 51.4 13 0.00044 29.9 3.6 32 103-134 10-41 (100)
42 3w03_C DNA repair protein XRCC 51.1 29 0.00098 30.6 6.1 37 93-129 147-183 (184)
43 1ik9_A DNA repair protein XRCC 50.9 35 0.0012 30.3 6.8 46 87-132 121-166 (213)
44 2v66_B Nuclear distribution pr 50.8 65 0.0022 26.2 7.8 56 75-133 8-63 (111)
45 3mq7_A Bone marrow stromal ant 50.6 38 0.0013 28.1 6.3 33 85-117 72-104 (121)
46 2yy0_A C-MYC-binding protein; 50.6 14 0.00048 26.2 3.3 28 103-130 24-51 (53)
47 3v33_A Ribonuclease ZC3H12A; r 49.9 3.4 0.00012 37.4 0.0 26 225-253 190-215 (223)
48 1ci6_A Transcription factor AT 49.3 28 0.00095 25.2 4.8 28 101-128 26-53 (63)
49 3hnw_A Uncharacterized protein 46.5 68 0.0023 26.6 7.4 43 83-125 67-109 (138)
50 1gu4_A CAAT/enhancer binding p 46.5 28 0.00096 26.6 4.7 32 101-132 39-70 (78)
51 1wlq_A Geminin; coiled-coil; 2 45.9 1E+02 0.0035 24.0 7.8 33 100-132 47-82 (83)
52 1gd2_E Transcription factor PA 45.3 73 0.0025 23.8 6.7 54 73-128 9-66 (70)
53 4dzn_A Coiled-coil peptide CC- 45.3 24 0.00083 22.8 3.5 16 104-119 8-23 (33)
54 1t6f_A Geminin; coiled-coil, c 44.3 11 0.00039 25.3 1.9 15 104-118 20-34 (37)
55 2jee_A YIIU; FTSZ, septum, coi 41.3 40 0.0014 26.1 4.8 30 98-127 13-42 (81)
56 2wvr_A Geminin; DNA replicatio 39.9 1.1E+02 0.0036 27.6 8.0 58 69-133 100-160 (209)
57 3m9b_A Proteasome-associated A 39.7 47 0.0016 30.6 5.9 40 80-119 57-96 (251)
58 2zxx_A Geminin; coiled-coil, c 39.1 1.3E+02 0.0045 23.1 7.6 55 70-131 20-74 (79)
59 3he5_A Synzip1; heterodimeric 38.2 52 0.0018 22.9 4.5 33 100-132 5-37 (49)
60 1jnm_A Proto-oncogene C-JUN; B 38.1 48 0.0016 23.6 4.6 32 100-131 24-55 (62)
61 2j5u_A MREC protein; bacterial 34.8 16 0.00056 32.8 2.0 19 162-180 94-112 (255)
62 1gd2_E Transcription factor PA 34.2 38 0.0013 25.3 3.6 47 75-124 23-69 (70)
63 1nlw_A MAD protein, MAX dimeri 33.4 57 0.002 24.6 4.6 29 102-130 51-79 (80)
64 1t2k_D Cyclic-AMP-dependent tr 32.6 69 0.0024 22.6 4.7 24 105-128 29-52 (61)
65 1nkp_A C-MYC, MYC proto-oncoge 32.6 71 0.0024 24.4 5.1 33 100-132 54-86 (88)
66 1h7c_A Tubulin-specific chaper 32.4 1.3E+02 0.0046 23.9 6.8 40 71-112 44-83 (108)
67 1uii_A Geminin; human, DNA rep 31.4 1.5E+02 0.0052 23.0 6.7 22 107-128 55-76 (83)
68 2w83_C C-JUN-amino-terminal ki 28.2 63 0.0022 24.9 4.0 56 78-133 10-72 (77)
69 2kuo_A Aprataxin and PNK-like 27.0 22 0.00075 28.2 1.3 10 275-284 62-71 (91)
70 2kqb_A Aprataxin and PNK-like 26.7 34 0.0012 27.1 2.3 10 275-284 57-66 (89)
71 2v71_A Nuclear distribution pr 26.1 3.1E+02 0.01 24.1 8.6 53 78-133 64-116 (189)
72 1qsd_A Protein (beta-tubulin b 25.9 1.3E+02 0.0045 23.9 5.7 37 73-111 44-80 (106)
73 3mxz_A Tubulin-specific chaper 25.4 1.2E+02 0.004 24.6 5.4 40 72-113 46-85 (116)
74 1am9_A Srebp-1A, protein (ster 24.6 99 0.0034 23.1 4.5 34 98-131 43-76 (82)
75 1ci6_A Transcription factor AT 23.9 1.2E+02 0.0042 21.7 4.7 33 98-130 30-62 (63)
76 2xdj_A Uncharacterized protein 23.8 81 0.0028 24.2 3.9 35 100-134 22-56 (83)
77 2w83_C C-JUN-amino-terminal ki 23.8 93 0.0032 24.0 4.2 33 101-133 5-44 (77)
78 2wt7_A Proto-oncogene protein 22.8 1.3E+02 0.0044 21.4 4.7 31 100-130 25-55 (63)
79 1pzr_A Erythronolide synthase; 22.0 84 0.0029 22.8 3.5 22 99-120 36-57 (60)
80 4ath_A MITF, microphthalmia-as 20.6 1.3E+02 0.0044 23.3 4.5 29 104-132 45-76 (83)
No 1
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.77 E-value=1e-19 Score=137.18 Aligned_cols=72 Identities=54% Similarity=1.046 Sum_probs=35.7
Q ss_pred ccCCCcccccCccccccCCcCccccccccccCCCccccccCCCccccccccccCccccCCCCCCccCCCCCc
Q 022289 220 YNQGMWKTELCNKWQETGSCPYGDYCQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCHFRHSLTE 291 (299)
Q Consensus 220 ~~q~kyKTeLCr~F~~~G~C~yGDrCrFAH~~~ELR~~~~~p~~KT~~Ck~F~~~G~CpyG~rCrFaH~~~e 291 (299)
.++.++||++|++|+..|.|++|++|+|+|+..+++....+|.+++.+|++|...|.|++|.+|+|+|+..+
T Consensus 5 ~~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 5 TTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp CCSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC---------------------------------
T ss_pred CCCCCccchhCHHhhhCCCcCCCCCccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 456789999999998899999999999999999999877788899999998888899999999999999765
No 2
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.32 E-value=4.9e-13 Score=107.04 Aligned_cols=53 Identities=30% Similarity=0.644 Sum_probs=47.6
Q ss_pred CcccccCccccccCCcCccccccccccCCCccccccCCCccccccccccCccccCCCCCCccCCCCCc
Q 022289 224 MWKTELCNKWQETGSCPYGDYCQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCHFRHSLTE 291 (299)
Q Consensus 224 kyKTeLCr~F~~~G~C~yGDrCrFAH~~~ELR~~~~~p~~KT~~Ck~F~~~G~CpyG~rCrFaH~~~e 291 (299)
.+|+.+|++|+ .|.|.+|++|+|+|+ +.+|++|...|.|++|.+|+|+|....
T Consensus 10 ~~k~~lC~~f~-~G~C~~G~~C~f~H~--------------~~~C~~f~~~G~C~~G~~C~f~H~~~~ 62 (98)
T 2cqe_A 10 PKKRELCKFYI-TGFCARAENCPYMHG--------------DFPCKLYHTTGNCINGDDCMFSHDPLT 62 (98)
T ss_dssp SCCCSBCTTTT-TTCCSCSTTCSSBSS--------------SSBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred CCCCccCcccc-cCcCCCCCCCCCCCC--------------CCcCcCcccCCcCCCCCCCcccCCCCc
Confidence 47999999997 899999999999999 248999976799999999999999653
No 3
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1e-12 Score=100.46 Aligned_cols=65 Identities=29% Similarity=0.574 Sum_probs=54.9
Q ss_pred CCCcccccCccccccCCcCccccccccccCCCccccccCCCccccccccccCccccCCCCCCccCCCCCccCcCCC
Q 022289 222 QGMWKTELCNKWQETGSCPYGDYCQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCHFRHSLTEQERIPV 297 (299)
Q Consensus 222 q~kyKTeLCr~F~~~G~C~yGDrCrFAH~~~ELR~~~~~p~~KT~~Ck~F~~~G~CpyG~rCrFaH~~~elrr~~~ 297 (299)
...+|+++|++|+ .|.|.+|++|.|+|+.... ++.+|++|++.|.|. |++|+|.|...+.+..+.
T Consensus 5 ~~~~k~~~C~~fl-~G~C~~G~~C~fsH~~~~~---------~~~~C~~f~~~G~C~-~~~C~f~H~~~~~~~~~C 69 (77)
T 2d9n_A 5 SSGEKTVVCKHWL-RGLCKKGDQCEFLHEYDMT---------KMPECYFYSKFGECS-NKECPFLHIDPESKIKDC 69 (77)
T ss_dssp CSCCTTSBCHHHH-TTCCSCTTSSSSBCSCCTT---------TSCBCHHHHHTCCCC-CSSCSSBCCCTTSSCSSS
T ss_pred CCCCcceeCHhHc-cCcCCCCCCCCCccccccC---------cCCCCcccCCCCccC-CCCeeccCCCccccCCCC
Confidence 3568999999999 5999999999999998642 355899999779999 999999999887665544
No 4
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.17 E-value=8.2e-12 Score=94.90 Aligned_cols=60 Identities=32% Similarity=0.643 Sum_probs=50.2
Q ss_pred CCcccccCccccccCCcCccccccccccCCCccccccCCCccccccccccCccccCCCCCCccCCCCCccC
Q 022289 223 GMWKTELCNKWQETGSCPYGDYCQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCHFRHSLTEQE 293 (299)
Q Consensus 223 ~kyKTeLCr~F~~~G~C~yGDrCrFAH~~~ELR~~~~~p~~KT~~Ck~F~~~G~CpyG~rCrFaH~~~elr 293 (299)
...++++|++|+ .|.|.+|++|.|+|+.... ++.+|++|++.|.|.+ ++|+|.|...+.+
T Consensus 12 ~~~k~~vCk~fl-~G~C~~G~~C~fsH~~~~~---------~~~~C~~f~~~G~C~~-~~C~y~H~~p~~k 71 (72)
T 2rhk_C 12 SGEKTVVCKHWL-RGLCKKGDQCEFLHEYDMT---------KMSECYFYSKFGECSN-KECPFLHIDPESK 71 (72)
T ss_dssp SCCCCSBCHHHH-TTCCCCGGGSSSBCSCCTT---------SCCBCHHHHHHSCCSB-TTCCSBCCCCC--
T ss_pred CCCcCeeCHHHh-cCCCCCCCCCCCccccccc---------cCCcccccCCCCCCCC-CCeeccCCCcccc
Confidence 367899999999 5999999999999997532 3569999997699999 9999999987643
No 5
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.12 E-value=1.6e-11 Score=92.35 Aligned_cols=65 Identities=25% Similarity=0.557 Sum_probs=52.7
Q ss_pred CcccccCccccccCCcCccc-cccccccCCCccccccCCCccccccccccCccccCCCCCCccCCCCCccC
Q 022289 224 MWKTELCNKWQETGSCPYGD-YCQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCHFRHSLTEQE 293 (299)
Q Consensus 224 kyKTeLCr~F~~~G~C~yGD-rCrFAH~~~ELR~~~~~p~~KT~~Ck~F~~~G~CpyG~rCrFaH~~~elr 293 (299)
..|..+|++|+ .|.|.+|+ .|.|+|+..+... .....++.+|.+|++ |.|.+| .|+|.|....++
T Consensus 3 ~~k~~vC~~f~-~G~C~rg~~~C~f~H~~~~~~~--~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~L~ 68 (70)
T 3d2q_A 3 TDRLEVCREYQ-RGNCNRGENDCRFAHPADSTMI--DTNDNTVTVCMDYIK-GRCSRE-KCKYFHPPAHLQ 68 (70)
T ss_dssp -CEEEBCHHHH-TTCCSSCTTTCSSBCCCTTSCC--BTTTTEEEBCHHHHT-TCCCCT-TCCSBCCCHHHH
T ss_pred cccchhCHHHh-cCCCCCCCCCCCCccCcccccc--cccCCcceeccccCc-CCCCCC-CcCeeCCHHHHh
Confidence 35778999997 89999999 5999999876543 123356889999996 999999 999999987654
No 6
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=8.5e-11 Score=94.33 Aligned_cols=64 Identities=27% Similarity=0.541 Sum_probs=52.7
Q ss_pred CcccccCccccccCCcCccc-cccccccCCCccccccCCCccccccccccCccccCCCCCCccCCCCCcc
Q 022289 224 MWKTELCNKWQETGSCPYGD-YCQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCHFRHSLTEQ 292 (299)
Q Consensus 224 kyKTeLCr~F~~~G~C~yGD-rCrFAH~~~ELR~~~~~p~~KT~~Ck~F~~~G~CpyG~rCrFaH~~~el 292 (299)
..|..+|++|+ .|.|.+|+ .|+|+|+....... ....++.+|.+|++ |.|.+| .|+|.|....+
T Consensus 17 ~~k~~VCr~Fl-rG~C~rgd~~C~FsH~~~~~~~~--~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~l 81 (98)
T 2e5s_A 17 TDKLEVCREFQ-RGNCARGETDCRFAHPADSTMID--TSDNTVTVCMDYIK-GRCMRE-KCKYFHPPAHL 81 (98)
T ss_dssp SSEEEBCSHHH-HTCCSSHHHHCSSBCCSSCCSCC--TTTCEEEBCHHHHH-TCCCCT-TCCSBCCCHHH
T ss_pred hhhhhhhHHHh-cCcCCCCCCCCCCcCCchhcccc--ccCCccccchhhcc-CCCCCC-CcCccCChHHH
Confidence 56789999999 59999999 89999998775421 12346789999996 999999 99999998654
No 7
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.74 E-value=2.8e-09 Score=83.27 Aligned_cols=63 Identities=25% Similarity=0.525 Sum_probs=51.4
Q ss_pred CCcccccCccccccCCcCccc-cccccccCCCccccccCCCccccccccccCccccCCCCCCccCCCCCcc
Q 022289 223 GMWKTELCNKWQETGSCPYGD-YCQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCHFRHSLTEQ 292 (299)
Q Consensus 223 ~kyKTeLCr~F~~~G~C~yGD-rCrFAH~~~ELR~~~~~p~~KT~~Ck~F~~~G~CpyG~rCrFaH~~~el 292 (299)
.+.+..+|+.|+ .|.|..|+ .|+|+|....+.. ...+..+|.+|.+ |.|.+| .|+|.|....+
T Consensus 5 ~~~~~~VCr~Fl-rG~C~r~d~~C~f~H~~~~~~~----~~~~~~vC~dflk-G~C~r~-~C~y~H~~~~l 68 (83)
T 3d2n_A 5 KWLTLEVCREFQ-RGTCSRPDTECKFAHPSKSCQV----ENGRVIACFDSLK-GRCSRE-NCKYLHPPPHL 68 (83)
T ss_dssp GGGEEEBCTTGG-GTCCCSCTTTCSSBCCCTTCCE----ETTEEECCHHHHT-TCCCCS-SCSSCCCCHHH
T ss_pred ccccchhcHHHh-cCCCCCCCCCCCCcCCCccccc----cCCceeehhHhhh-ccccCC-CcceeCChHHH
Confidence 467889999999 49999997 9999999875421 1234679999996 999998 99999997654
No 8
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.54 E-value=3.4e-08 Score=78.25 Aligned_cols=65 Identities=26% Similarity=0.539 Sum_probs=51.8
Q ss_pred cCCCcccccCccccccCCcCccc-cccccccCCCccccccCCCccccccccccCccccCCCCCCccCCCCCcc
Q 022289 221 NQGMWKTELCNKWQETGSCPYGD-YCQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCHFRHSLTEQ 292 (299)
Q Consensus 221 ~q~kyKTeLCr~F~~~G~C~yGD-rCrFAH~~~ELR~~~~~p~~KT~~Ck~F~~~G~CpyG~rCrFaH~~~el 292 (299)
...+.+..+|+.|+ .|.|..|+ .|+|+|....... ...+..+|.+|++ |.|.++ .|+|.|....+
T Consensus 11 ~~~~~~~~VCrdFl-rG~C~r~d~~CrfsH~~~~~~v----~~~~~~vC~dflk-G~C~r~-~Cky~H~~~hl 76 (89)
T 2rpp_A 11 DTKWLTLEVCRQFQ-RGTCSRSDEECKFAHPPKSCQV----ENGRVIACFDSLK-GRCSRE-NCKYLHPPTHL 76 (89)
T ss_dssp SCSSSEECBCHHHH-HTCCCCCTTTSSSBCCCSSSCC----BTTBEEBCHHHHH-TCCCCT-TCCSBCCCHHH
T ss_pred CCCcchhhhchHHh-cCCCCCCCCCCCCcCCCccccc----cCCceeeehhhhh-CcCCCC-CcceecCHHHH
Confidence 34467789999999 59999998 9999999875321 1235679999995 999998 99999997643
No 9
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=3.6e-08 Score=75.28 Aligned_cols=53 Identities=23% Similarity=0.420 Sum_probs=39.0
Q ss_pred eccCCCcccccCccccccCCcCccccccccccCCCccccccC-CCcccccccccc
Q 022289 219 VYNQGMWKTELCNKWQETGSCPYGDYCQFAHDFTELRPVIRH-PKYKTEVCRMVL 272 (299)
Q Consensus 219 v~~q~kyKTeLCr~F~~~G~C~yGDrCrFAH~~~ELR~~~~~-p~~KT~~Ck~F~ 272 (299)
-++....|++||++|+ .|.|+||++|+|||+..||+..... ...++++|+...
T Consensus 12 ~~R~P~~k~~LC~~~~-~G~C~~G~~C~FAHG~~ELr~~~~R~~~~k~k~~~Ar~ 65 (69)
T 2d9m_A 12 QHRFPTGYFSICDRYM-NGTCPEGNSCKFAHGNAELHEWEERRDALKMKLNKASG 65 (69)
T ss_dssp CCCCCCSCCSBCHHHH-HSCCSSCSSCSSBSSHHHHHHHHHHHHHHTTTCCSCCC
T ss_pred cccCCCCCcccCcccC-cCCCCCCCccCCcCCHHHHhhHHHHHHHHHHHHHHHhc
Confidence 3555566779999995 8999999999999999999863322 234566666443
No 10
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.09 E-value=1.8e-06 Score=64.47 Aligned_cols=36 Identities=42% Similarity=0.907 Sum_probs=31.9
Q ss_pred cCCCccccccccccCccccCCCCCCccCCCCCccCc
Q 022289 259 RHPKYKTEVCRMVLSGGICPYGHRCHFRHSLTEQER 294 (299)
Q Consensus 259 ~~p~~KT~~Ck~F~~~G~CpyG~rCrFaH~~~elrr 294 (299)
..+.+++.+|++|...|.|++|++|+|+|+..+++.
T Consensus 6 ~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~ 41 (77)
T 1m9o_A 6 TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQ 41 (77)
T ss_dssp CSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGG
T ss_pred CCCCccchhCHHhhhCCCcCCCCCccCCCCChhhcc
Confidence 356789999999987799999999999999988775
No 11
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.91 E-value=1.2e-06 Score=66.91 Aligned_cols=34 Identities=29% Similarity=0.682 Sum_probs=29.0
Q ss_pred CCCccccccccccCccccCCCCCCccCCCCCccCc
Q 022289 260 HPKYKTEVCRMVLSGGICPYGHRCHFRHSLTEQER 294 (299)
Q Consensus 260 ~p~~KT~~Ck~F~~~G~CpyG~rCrFaH~~~elrr 294 (299)
.|..+..+|+.|. .|.|+||++|.|+|+..+++.
T Consensus 15 ~P~~k~~LC~~~~-~G~C~~G~~C~FAHG~~ELr~ 48 (69)
T 2d9m_A 15 FPTGYFSICDRYM-NGTCPEGNSCKFAHGNAELHE 48 (69)
T ss_dssp CCCSCCSBCHHHH-HSCCSSCSSCSSBSSHHHHHH
T ss_pred CCCCCcccCcccC-cCCCCCCCccCCcCCHHHHhh
Confidence 3455679999995 699999999999999998874
No 12
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=97.02 E-value=0.00032 Score=55.81 Aligned_cols=25 Identities=28% Similarity=0.822 Sum_probs=22.9
Q ss_pred ccccccccccCccccCCCCCCccCCC
Q 022289 263 YKTEVCRMVLSGGICPYGHRCHFRHS 288 (299)
Q Consensus 263 ~KT~~Ck~F~~~G~CpyG~rCrFaH~ 288 (299)
+++.+|++|. .|.|.+|++|+|+|+
T Consensus 11 ~k~~lC~~f~-~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 11 KKRELCKFYI-TGFCARAENCPYMHG 35 (98)
T ss_dssp CCCSBCTTTT-TTCCSCSTTCSSBSS
T ss_pred CCCccCcccc-cCcCCCCCCCCCCCC
Confidence 4788999997 699999999999998
No 13
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.99 E-value=0.00025 Score=53.75 Aligned_cols=31 Identities=35% Similarity=0.713 Sum_probs=26.8
Q ss_pred CccccccccccCccccCCCCCCccCCCCCccC
Q 022289 262 KYKTEVCRMVLSGGICPYGHRCHFRHSLTEQE 293 (299)
Q Consensus 262 ~~KT~~Ck~F~~~G~CpyG~rCrFaH~~~elr 293 (299)
.+++.+|++|.. |.|.+|+.|.|+|+....+
T Consensus 7 ~~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~~ 37 (77)
T 2d9n_A 7 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDMTK 37 (77)
T ss_dssp CCTTSBCHHHHT-TCCSCTTSSSSBCSCCTTT
T ss_pred CCcceeCHhHcc-CcCCCCCCCCCccccccCc
Confidence 357889999997 9999999999999987543
No 14
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=96.83 E-value=0.0003 Score=53.12 Aligned_cols=30 Identities=37% Similarity=0.749 Sum_probs=25.8
Q ss_pred ccccccccccCccccCCCCCCccCCCCCccC
Q 022289 263 YKTEVCRMVLSGGICPYGHRCHFRHSLTEQE 293 (299)
Q Consensus 263 ~KT~~Ck~F~~~G~CpyG~rCrFaH~~~elr 293 (299)
.++.+|++|.. |.|.+|+.|.|+|+....+
T Consensus 14 ~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~~ 43 (72)
T 2rhk_C 14 EKTVVCKHWLR-GLCKKGDQCEFLHEYDMTK 43 (72)
T ss_dssp CCCSBCHHHHT-TCCCCGGGSSSBCSCCTTS
T ss_pred CcCeeCHHHhc-CCCCCCCCCCCcccccccc
Confidence 46789999997 9999999999999976543
No 15
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=96.37 E-value=0.0007 Score=48.76 Aligned_cols=27 Identities=30% Similarity=0.724 Sum_probs=20.2
Q ss_pred cccccccccCccccCCCCCCccCCCCC
Q 022289 264 KTEVCRMVLSGGICPYGHRCHFRHSLT 290 (299)
Q Consensus 264 KT~~Ck~F~~~G~CpyG~rCrFaH~~~ 290 (299)
.+.+|..|...|+|++|..|.+.|+..
T Consensus 19 ~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 19 PTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred ccchhhhccccccCCCCCCCCccccCC
Confidence 466788787778888888888887753
No 16
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=96.18 E-value=0.0017 Score=46.77 Aligned_cols=29 Identities=31% Similarity=0.778 Sum_probs=26.7
Q ss_pred CcccccCccccccCCcCccccccccccCC
Q 022289 224 MWKTELCNKWQETGSCPYGDYCQFAHDFT 252 (299)
Q Consensus 224 kyKTeLCr~F~~~G~C~yGDrCrFAH~~~ 252 (299)
..++.+|..|...|.|++|.+|.+.|+++
T Consensus 17 ~~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 17 PHPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred ccccchhhhccccccCCCCCCCCccccCC
Confidence 46899999999899999999999999985
No 17
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=96.16 E-value=0.0022 Score=58.66 Aligned_cols=27 Identities=30% Similarity=0.760 Sum_probs=21.0
Q ss_pred ccccCccccccCCcCc----cccccccccCCC
Q 022289 226 KTELCNKWQETGSCPY----GDYCQFAHDFTE 253 (299)
Q Consensus 226 KTeLCr~F~~~G~C~y----GDrCrFAH~~~E 253 (299)
.--+|++|+ -|.|++ +..|+|.|++..
T Consensus 88 ~LHLCK~~l-~G~C~~~~~~~~~Ck~SHdi~s 118 (229)
T 3u9g_A 88 SLHLCKLNL-LGRCHYAQSQRNLCKYSHDVLS 118 (229)
T ss_dssp SBCCCHHHH-TTCCGGGTCCSSCCSSCSCTTC
T ss_pred ceeechhhh-cCcCCcccCCCCCcccccccCc
Confidence 446899998 699943 467999998854
No 18
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=95.71 E-value=0.0055 Score=56.00 Aligned_cols=52 Identities=23% Similarity=0.648 Sum_probs=43.4
Q ss_pred cCCCcccccCcccccc----CCcCccccccccccCCCccccccCCCccccccccccCccccCCCCCCccCCCCCcc
Q 022289 221 NQGMWKTELCNKWQET----GSCPYGDYCQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCHFRHSLTEQ 292 (299)
Q Consensus 221 ~q~kyKTeLCr~F~~~----G~C~yGDrCrFAH~~~ELR~~~~~p~~KT~~Ck~F~~~G~CpyG~rCrFaH~~~el 292 (299)
+....=.++|.+| .. |.|.+++.|...| +|++|.. |.|+| ..|.-.|+..+.
T Consensus 145 nDp~lLPeiC~~Y-kG~g~~g~C~~~~~C~kLH-----------------IC~~Fl~-G~C~f-~~CkRsH~~~~~ 200 (229)
T 3u9g_A 145 SDPFFLPEICKSY-KGEGRKQTCGQPQPCERLH-----------------ICEHFTR-GNCSY-LNCLRSHNLMDR 200 (229)
T ss_dssp TCGGGSCCBCTTC-CCSSSCCSCSSSSCCCSBC-----------------SCHHHHT-TCCCC-SSCSSCCCTTSH
T ss_pred CCCccCchHHHHh-CCCCCCCcCCCCCCCccee-----------------ccchhhc-CCcCC-CCccCccCccCc
Confidence 3345668999999 43 6899999999988 8999995 99999 799999998653
No 19
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=95.48 E-value=0.003 Score=47.02 Aligned_cols=31 Identities=19% Similarity=0.486 Sum_probs=26.8
Q ss_pred CCcccccCccccccCCcCccccccccccCCCcc
Q 022289 223 GMWKTELCNKWQETGSCPYGDYCQFAHDFTELR 255 (299)
Q Consensus 223 ~kyKTeLCr~F~~~G~C~yGDrCrFAH~~~ELR 255 (299)
...++.+|.+|+ .|.|.+| +|.|.|....|+
T Consensus 38 ~~~~~~vC~~fl-kG~C~r~-~C~y~H~~~~L~ 68 (70)
T 3d2q_A 38 NDNTVTVCMDYI-KGRCSRE-KCKYFHPPAHLQ 68 (70)
T ss_dssp TTTEEEBCHHHH-TTCCCCT-TCCSBCCCHHHH
T ss_pred cCCcceeccccC-cCCCCCC-CcCeeCCHHHHh
Confidence 467899999999 6999999 999999987654
No 20
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=95.27 E-value=0.007 Score=46.98 Aligned_cols=27 Identities=33% Similarity=0.700 Sum_probs=23.8
Q ss_pred cccccccccCccccCCCC-CCccCCCCCc
Q 022289 264 KTEVCRMVLSGGICPYGH-RCHFRHSLTE 291 (299)
Q Consensus 264 KT~~Ck~F~~~G~CpyG~-rCrFaH~~~e 291 (299)
+..+|+.|++ |.|.+|+ .|+|+|....
T Consensus 8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~ 35 (83)
T 3d2n_A 8 TLEVCREFQR-GTCSRPDTECKFAHPSKS 35 (83)
T ss_dssp EEEBCTTGGG-TCCCSCTTTCSSBCCCTT
T ss_pred cchhcHHHhc-CCCCCCCCCCCCcCCCcc
Confidence 4679999997 9999997 9999999864
No 21
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.17 E-value=0.0034 Score=50.07 Aligned_cols=29 Identities=38% Similarity=0.724 Sum_probs=25.2
Q ss_pred ccccccccccCccccCCCC-CCccCCCCCcc
Q 022289 263 YKTEVCRMVLSGGICPYGH-RCHFRHSLTEQ 292 (299)
Q Consensus 263 ~KT~~Ck~F~~~G~CpyG~-rCrFaH~~~el 292 (299)
.+..+|++|+. |.|.+|+ .|+|+|.....
T Consensus 18 ~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~ 47 (98)
T 2e5s_A 18 DKLEVCREFQR-GNCARGETDCRFAHPADST 47 (98)
T ss_dssp SEEEBCSHHHH-TCCSSHHHHCSSBCCSSCC
T ss_pred hhhhhhHHHhc-CcCCCCCCCCCCcCCchhc
Confidence 46789999996 9999999 79999998653
No 22
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=94.08 E-value=0.019 Score=45.24 Aligned_cols=27 Identities=33% Similarity=0.735 Sum_probs=23.9
Q ss_pred cccccccccCccccCCCC-CCccCCCCCc
Q 022289 264 KTEVCRMVLSGGICPYGH-RCHFRHSLTE 291 (299)
Q Consensus 264 KT~~Ck~F~~~G~CpyG~-rCrFaH~~~e 291 (299)
+..+|+.|++ |.|..|+ .|+|+|....
T Consensus 16 ~~~VCrdFlr-G~C~r~d~~CrfsH~~~~ 43 (89)
T 2rpp_A 16 TLEVCRQFQR-GTCSRSDEECKFAHPPKS 43 (89)
T ss_dssp EECBCHHHHH-TCCCCCTTTSSSBCCCSS
T ss_pred hhhhchHHhc-CCCCCCCCCCCCcCCCcc
Confidence 4579999997 9999998 9999999764
No 23
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=93.24 E-value=0.22 Score=40.48 Aligned_cols=45 Identities=29% Similarity=0.363 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhhHHHH--------------HHHHHHHHHHHHHHHhhhhhHHHhhHH
Q 022289 79 QARLILEYQQLCDHYDLC--------------FSRLQAITRELETLRQQNADLRLANAR 123 (299)
Q Consensus 79 ~arl~l~~q~~~~ry~lc--------------l~rL~~~~~E~~~Lr~En~~Lr~~N~~ 123 (299)
...||.+|-+|-.+|+.- -.++++...|++.||.||..|+..|.-
T Consensus 32 KqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 32 KQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888888887777642 368889999999999999999998864
No 24
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=91.54 E-value=0.16 Score=36.56 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=26.6
Q ss_pred HHHHHHHHhhhhhHHHhhHHHHHHHhhhhc
Q 022289 104 TRELETLRQQNADLRLANARLLKIITGSFH 133 (299)
Q Consensus 104 ~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~~ 133 (299)
..|+++||+||++|+..+..|...+..+..
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999998888754
No 25
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=91.52 E-value=0.057 Score=48.92 Aligned_cols=26 Identities=23% Similarity=0.628 Sum_probs=22.5
Q ss_pred ccccCccccccCCcCccccccccccCC
Q 022289 226 KTELCNKWQETGSCPYGDYCQFAHDFT 252 (299)
Q Consensus 226 KTeLCr~F~~~G~C~yGDrCrFAH~~~ 252 (299)
...+|.||. .|.|.+|+.|.|.|...
T Consensus 69 ~~~~C~ffa-kG~C~~G~~C~y~H~lP 94 (240)
T 3u1l_A 69 QLFFCLFFA-KGMCCLGPKCEYLHHIP 94 (240)
T ss_dssp CCSBCHHHH-TTCCSCGGGCSSBBSCC
T ss_pred CCeEcCccc-cCCCCCCCCCCccCCCC
Confidence 346999998 69999999999999754
No 26
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=90.97 E-value=0.044 Score=49.69 Aligned_cols=25 Identities=24% Similarity=0.773 Sum_probs=22.1
Q ss_pred cccccccCccccCCCCCCccCCCCCc
Q 022289 266 EVCRMVLSGGICPYGHRCHFRHSLTE 291 (299)
Q Consensus 266 ~~Ck~F~~~G~CpyG~rCrFaH~~~e 291 (299)
.+|.||.+ |.|++|..|.|.|....
T Consensus 71 ~~C~ffak-G~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 71 FFCLFFAK-GMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp SBCHHHHT-TCCSCGGGCSSBBSCCC
T ss_pred eEcCcccc-CCCCCCCCCCccCCCCC
Confidence 48999986 99999999999998654
No 27
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=89.62 E-value=0.055 Score=42.05 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=15.4
Q ss_pred cccCccccccCCcCccccccccccC
Q 022289 227 TELCNKWQETGSCPYGDYCQFAHDF 251 (299)
Q Consensus 227 TeLCr~F~~~G~C~yGDrCrFAH~~ 251 (299)
.+.|+||. .|.. +.|.|.|..
T Consensus 9 ~e~CKf~~---~Ctn-~~C~f~Hp~ 29 (80)
T 2lhn_A 9 LEQCKFGT---HCTN-KRCKYRHAR 29 (80)
Confidence 46788776 5777 788888864
No 28
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=82.69 E-value=0.28 Score=38.08 Aligned_cols=40 Identities=33% Similarity=0.708 Sum_probs=27.9
Q ss_pred cCccccccCCcCccccccccccCCCccccccCCCccccccccccCccccCCCCCCccCCCC
Q 022289 229 LCNKWQETGSCPYGDYCQFAHDFTELRPVIRHPKYKTEVCRMVLSGGICPYGHRCHFRHSL 289 (299)
Q Consensus 229 LCr~F~~~G~C~yGDrCrFAH~~~ELR~~~~~p~~KT~~Ck~F~~~G~CpyG~rCrFaH~~ 289 (299)
+|+++. .|.. ..|.|.|.. ...|+|+. .|.+ ..|.|.|..
T Consensus 33 ~Cr~g~---~C~~-~~C~f~HP~-------------~~~Crf~~---~C~n-~~C~F~Hp~ 72 (80)
T 2lhn_A 33 MCREGA---NCTR-IDCLFGHPI-------------NEDCRFGV---NCKN-IYCLFRHPP 72 (80)
Confidence 555443 4665 568899952 23798776 4998 799999964
No 29
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=74.62 E-value=2.1 Score=30.70 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhHHHHHHH
Q 022289 100 LQAITRELETLRQQNADLRLANARLLKII 128 (299)
Q Consensus 100 L~~~~~E~~~Lr~En~~Lr~~N~~L~~~l 128 (299)
|.+.+.+++.|..||.+|+-.|..|...|
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66778889999999999998888876543
No 30
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=70.53 E-value=15 Score=28.85 Aligned_cols=46 Identities=28% Similarity=0.354 Sum_probs=40.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhh
Q 022289 87 QQLCDHYDLCFSRLQAITRELETLRQQNADLRLANARLLKIITGSF 132 (299)
Q Consensus 87 q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~ 132 (299)
|.+.--|---++-.-|.+.--+.||-||++|-|.|+.|-+.|-+-.
T Consensus 29 qqlr~~y~s~~se~~dlt~s~ekl~ae~~dlivsnsklfrqig~t~ 74 (97)
T 1no4_A 29 QQLRVNYGSFVSEYNDLTKSHEKLAAEKDDLIVSNSKLFRQIGLTE 74 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhccCCeeeecHHHHHHhccch
Confidence 5666678888999999999999999999999999999999987654
No 31
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=64.27 E-value=1.6 Score=39.54 Aligned_cols=25 Identities=28% Similarity=0.677 Sum_probs=0.0
Q ss_pred cccccccccCccccCCCCCCccCCCCCc
Q 022289 264 KTEVCRMVLSGGICPYGHRCHFRHSLTE 291 (299)
Q Consensus 264 KT~~Ck~F~~~G~CpyG~rCrFaH~~~e 291 (299)
+..+|++-. .|.||.+|.|.|....
T Consensus 191 ~~~~~~~~~---~~~~~~~~~~~~~~~~ 215 (223)
T 3v33_A 191 RKQPCPYGR---KCTYGIKCRFFHPERP 215 (223)
T ss_dssp ----------------------------
T ss_pred CCCCCCCCc---ccccCCcceecCCccC
Confidence 456798543 5999999999997643
No 32
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=62.37 E-value=1.8 Score=32.40 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhhhhHHHhhHHHHH
Q 022289 102 AITRELETLRQQNADLRLANARLLK 126 (299)
Q Consensus 102 ~~~~E~~~Lr~En~~Lr~~N~~L~~ 126 (299)
+...|++.|+.||.+|+.+|..|.+
T Consensus 63 ~~~~ei~~L~~e~~~L~~e~~~Lkk 87 (97)
T 2jn6_A 63 SEAEQIRQLKKENALQRARTRHPAE 87 (97)
T ss_dssp HTHHHHHHHHHCGGGGGGTTSCCCG
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888999999999988876543
No 33
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=61.09 E-value=11 Score=26.85 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhHHHHHH
Q 022289 100 LQAITRELETLRQQNADLRLANARLLKI 127 (299)
Q Consensus 100 L~~~~~E~~~Lr~En~~Lr~~N~~L~~~ 127 (299)
+.+.-.+++.|..||..|+..+..|...
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777788888888888777766543
No 34
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=59.42 E-value=32 Score=24.41 Aligned_cols=42 Identities=17% Similarity=0.244 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 022289 74 EHRLQQARLILEYQQLCDHYDLCFSRLQAITRELETLRQQNADL 117 (299)
Q Consensus 74 ~~rl~~arl~l~~q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~L 117 (299)
|+|++..+. +-+.+..|.+-=-.-|.+|-+|+..|+.|-..|
T Consensus 8 ~~r~~~l~~--~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEA--RIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566655444 448899999888889999999999999988776
No 35
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=58.30 E-value=15 Score=27.41 Aligned_cols=35 Identities=26% Similarity=0.175 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhhc
Q 022289 99 RLQAITRELETLRQQNADLRLANARLLKIITGSFH 133 (299)
Q Consensus 99 rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~~ 133 (299)
++...-.+...|..|..+|+..|..|...|..|.+
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~~ 82 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALGG 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45555667777778888888888888888877653
No 36
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=57.36 E-value=12 Score=30.06 Aligned_cols=31 Identities=13% Similarity=0.154 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhHHHHHHHhh
Q 022289 100 LQAITRELETLRQQNADLRLANARLLKIITG 130 (299)
Q Consensus 100 L~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~ 130 (299)
+-....|++.|++||.+||-.+..|-..|.-
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666666655544
No 37
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=55.94 E-value=49 Score=25.67 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=33.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhhcc
Q 022289 85 EYQQLCDHYDLCFSRLQAITRELETLRQQNADLRLANARLLKIITGSFHR 134 (299)
Q Consensus 85 ~~q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~~~ 134 (299)
+..++-....-+-.-..++..+.+.|++||..|+-.=.....||..|-||
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666666666666666667777777777777777777666554
No 38
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=54.86 E-value=11 Score=27.48 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhHHHHHHH
Q 022289 98 SRLQAITRELETLRQQNADLRLANARLLKII 128 (299)
Q Consensus 98 ~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l 128 (299)
.++.+.-.+++.|..||.+|+.....|...|
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788888888888888776665543
No 39
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=53.95 E-value=16 Score=26.39 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhhhHHHhhHHHHHHHhhhh
Q 022289 103 ITRELETLRQQNADLRLANARLLKIITGSF 132 (299)
Q Consensus 103 ~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~ 132 (299)
....+++||.||.-||-+=.|=+..|+.|.
T Consensus 8 L~~QVe~Lk~ENshLrrEL~dNS~~lskLE 37 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQELEDNSNHLTKLE 37 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 456789999999999987666666666654
No 40
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=52.16 E-value=20 Score=28.01 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhhhhHHHhhHHHHHHHhhh
Q 022289 102 AITRELETLRQQNADLRLANARLLKIITGS 131 (299)
Q Consensus 102 ~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~ 131 (299)
+...+++.|..||..|+.....|...+..|
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~L 69 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTL 69 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677778888888888776666666544
No 41
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=51.43 E-value=13 Score=29.92 Aligned_cols=32 Identities=22% Similarity=0.104 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhhhhHHHhhHHHHHHHhhhhcc
Q 022289 103 ITRELETLRQQNADLRLANARLLKIITGSFHR 134 (299)
Q Consensus 103 ~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~~~ 134 (299)
+..++..||+|...|+.+|..|..+++.|..+
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999863
No 42
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=51.10 E-value=29 Score=30.58 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHh
Q 022289 93 YDLCFSRLQAITRELETLRQQNADLRLANARLLKIIT 129 (299)
Q Consensus 93 y~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~ 129 (299)
++-||...++...+...|.+||.+|+.+=++...+|+
T Consensus 147 id~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 147 ICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4569999999999999999999999998888877775
No 43
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=50.88 E-value=35 Score=30.25 Aligned_cols=46 Identities=9% Similarity=0.068 Sum_probs=38.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhh
Q 022289 87 QQLCDHYDLCFSRLQAITRELETLRQQNADLRLANARLLKIITGSF 132 (299)
Q Consensus 87 q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~ 132 (299)
|.|.+=++-|+.-..++-.+++.|..||.+|...+++|...|+.+.
T Consensus 121 e~i~elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v 166 (213)
T 1ik9_A 121 EVIRELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAV 166 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556778888888778888889999999999999999988888775
No 44
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=50.75 E-value=65 Score=26.19 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhhc
Q 022289 75 HRLQQARLILEYQQLCDHYDLCFSRLQAITRELETLRQQNADLRLANARLLKIITGSFH 133 (299)
Q Consensus 75 ~rl~~arl~l~~q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~~ 133 (299)
-+...+||-.++-++-..|+-. ..++...+..|..|...||..|..|...|-.|.+
T Consensus 8 L~~~~~~L~~E~e~~k~K~~~~---~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq 63 (111)
T 2v66_B 8 LQADNQRLKYEVEALKEKLEHQ---YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788888888888888864 4567777888888888888888888888888764
No 45
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=50.64 E-value=38 Score=28.14 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=21.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 022289 85 EYQQLCDHYDLCFSRLQAITRELETLRQQNADL 117 (299)
Q Consensus 85 ~~q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~L 117 (299)
+++++-+--..==-.|+|+..|++-||.||-.|
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence 355665555555557888888888777776544
No 46
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=50.58 E-value=14 Score=26.24 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhhhHHHhhHHHHHHHhh
Q 022289 103 ITRELETLRQQNADLRLANARLLKIITG 130 (299)
Q Consensus 103 ~~~E~~~Lr~En~~Lr~~N~~L~~~l~~ 130 (299)
.-.|.+.||.++.+|...|.+|..+|+.
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578899999999999999999988863
No 47
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=49.94 E-value=3.4 Score=37.42 Aligned_cols=26 Identities=27% Similarity=0.558 Sum_probs=0.0
Q ss_pred cccccCccccccCCcCccccccccccCCC
Q 022289 225 WKTELCNKWQETGSCPYGDYCQFAHDFTE 253 (299)
Q Consensus 225 yKTeLCr~F~~~G~C~yGDrCrFAH~~~E 253 (299)
.+..+|+|- ..|.||.+|+|-|....
T Consensus 190 ~~~~~~~~~---~~~~~~~~~~~~~~~~~ 215 (223)
T 3v33_A 190 HRKQPCPYG---RKCTYGIKCRFFHPERP 215 (223)
T ss_dssp -----------------------------
T ss_pred cCCCCCCCC---cccccCCcceecCCccC
Confidence 367899953 47999999999997643
No 48
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=49.34 E-value=28 Score=25.19 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhhhhHHHhhHHHHHHH
Q 022289 101 QAITRELETLRQQNADLRLANARLLKII 128 (299)
Q Consensus 101 ~~~~~E~~~Lr~En~~Lr~~N~~L~~~l 128 (299)
.+.-.+++.|..||.+|+..-..|...+
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555444444433
No 49
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=46.48 E-value=68 Score=26.60 Aligned_cols=43 Identities=9% Similarity=0.052 Sum_probs=24.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHH
Q 022289 83 ILEYQQLCDHYDLCFSRLQAITRELETLRQQNADLRLANARLL 125 (299)
Q Consensus 83 ~l~~q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~ 125 (299)
+-+|-.+-..|+.--..|.+.-.|+.+|++|+..++..+..+.
T Consensus 67 adEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~ 109 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSA 109 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666666666666666655555443333
No 50
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=46.48 E-value=28 Score=26.56 Aligned_cols=32 Identities=13% Similarity=0.100 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhh
Q 022289 101 QAITRELETLRQQNADLRLANARLLKIITGSF 132 (299)
Q Consensus 101 ~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~ 132 (299)
.+...+++.|..||..|+.....|...|..|-
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888888888887777664
No 51
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=45.91 E-value=1e+02 Score=24.02 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHhh---HHHHHHHhhhh
Q 022289 100 LQAITRELETLRQQNADLRLAN---ARLLKIITGSF 132 (299)
Q Consensus 100 L~~~~~E~~~Lr~En~~Lr~~N---~~L~~~l~~~~ 132 (299)
+-..-.|++.|+.||.+|+.-= .+|+..|..|+
T Consensus 47 ie~~~eEi~~Lk~en~~L~elA~~~q~la~~i~~L~ 82 (83)
T 1wlq_A 47 IEQKDSEIARLRKENKDLAEVAEHVQYMAEVIERLS 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455668888888888888632 34555555554
No 52
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=45.30 E-value=73 Score=23.77 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHhhhhhHHHhhHHHHHHH
Q 022289 73 TEHRLQQARLILEYQQLCDHYDLCFSRLQAITREL----ETLRQQNADLRLANARLLKII 128 (299)
Q Consensus 73 t~~rl~~arl~l~~q~~~~ry~lcl~rL~~~~~E~----~~Lr~En~~Lr~~N~~L~~~l 128 (299)
.+.|..+-|.++ +..-+|=+-=+.-|.+-+.++ +.|..||..||..+..|...+
T Consensus 9 ~~kR~~qNR~AQ--RafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 9 SSKRKAQNRAAQ--RAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp CHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666 555555554333333322222 223344444444444444433
No 53
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=45.29 E-value=24 Score=22.79 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=7.5
Q ss_pred HHHHHHHHhhhhhHHH
Q 022289 104 TRELETLRQQNADLRL 119 (299)
Q Consensus 104 ~~E~~~Lr~En~~Lr~ 119 (299)
-.|+++|+.|.+.|..
T Consensus 8 kqeiaalkkeiaalkf 23 (33)
T 4dzn_A 8 KQEIAALKKEIAALKF 23 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 54
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=44.27 E-value=11 Score=25.31 Aligned_cols=15 Identities=27% Similarity=0.576 Sum_probs=10.0
Q ss_pred HHHHHHHHhhhhhHH
Q 022289 104 TRELETLRQQNADLR 118 (299)
Q Consensus 104 ~~E~~~Lr~En~~Lr 118 (299)
-.|++.|+.||.+|.
T Consensus 20 deeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 20 DNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHH
Confidence 356777777777664
No 55
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=41.29 E-value=40 Score=26.14 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhHHHHHH
Q 022289 98 SRLQAITRELETLRQQNADLRLANARLLKI 127 (299)
Q Consensus 98 ~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~ 127 (299)
.+++.|.+.++.|+.|..+|+-.|..|...
T Consensus 13 ~KIq~avdtI~lLqmEieELKekN~~L~~e 42 (81)
T 2jee_A 13 AKVQQAIDTITLLQMEIEELKEKNNSLSQE 42 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777775555555555555555544443
No 56
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=39.88 E-value=1.1e+02 Score=27.63 Aligned_cols=58 Identities=16% Similarity=0.211 Sum_probs=36.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHH---hhHHHHHHHhhhhc
Q 022289 69 HRMATEHRLQQARLILEYQQLCDHYDLCFSRLQAITRELETLRQQNADLRL---ANARLLKIITGSFH 133 (299)
Q Consensus 69 ~~~~t~~rl~~arl~l~~q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~---~N~~L~~~l~~~~~ 133 (299)
-..|-++|+-|-..+.+-.+|.++ |-..-.|++.|+.||.+|+. .=.+|+..|..|.+
T Consensus 100 k~lAE~RR~AL~eaLeEN~~Lh~~-------ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~ 160 (209)
T 2wvr_A 100 KEVAEKRRKALYEALKENEKLHKE-------IEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNG 160 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555665555555555555443 44456788889999988887 33466666776665
No 57
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=39.71 E-value=47 Score=30.59 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 022289 80 ARLILEYQQLCDHYDLCFSRLQAITRELETLRQQNADLRL 119 (299)
Q Consensus 80 arl~l~~q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~ 119 (299)
..|..|.+.+..+.+-+-.-|.++-+|+..|+.|+..|+.
T Consensus 57 ~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 57 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3466666788888777777777777777777777766653
No 58
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=39.05 E-value=1.3e+02 Score=23.14 Aligned_cols=55 Identities=18% Similarity=0.232 Sum_probs=33.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhh
Q 022289 70 RMATEHRLQQARLILEYQQLCDHYDLCFSRLQAITRELETLRQQNADLRLANARLLKIITGS 131 (299)
Q Consensus 70 ~~~t~~rl~~arl~l~~q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~ 131 (299)
..|-++|+-+-..+.+-..+.. .|-.--.|++.|+.||..|...-.+..-..+.+
T Consensus 20 ~lAE~RR~AL~eaL~EN~~Lh~-------~ie~~~eEi~~LkeEN~~L~el~~~~~~laevl 74 (79)
T 2zxx_A 20 EVAEQRRKALYEALKENEKLHK-------EIEQKDSEIARLRKENKDLAEVAEHVQYMAEVI 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455544444444433332 344455688899999999988777666555554
No 59
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=38.24 E-value=52 Score=22.86 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhh
Q 022289 100 LQAITRELETLRQQNADLRLANARLLKIITGSF 132 (299)
Q Consensus 100 L~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~ 132 (299)
.+..-+|++.|-.||.-|.--|.|-..+|+-|.
T Consensus 5 vaqlenevaslenenetlkkknlhkkdliayle 37 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIAYLE 37 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHHHHH
Confidence 355678999999999999999998887777664
No 60
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=38.12 E-value=48 Score=23.58 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhh
Q 022289 100 LQAITRELETLRQQNADLRLANARLLKIITGS 131 (299)
Q Consensus 100 L~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~ 131 (299)
+.+.-.+++.|..||.+|+..-..|...+..|
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666677777776666666665554
No 61
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=34.77 E-value=16 Score=32.82 Aligned_cols=19 Identities=11% Similarity=0.184 Sum_probs=9.6
Q ss_pred hccCCccceecCCcccccC
Q 022289 162 RESFPKSISVRSSGCTIKP 180 (299)
Q Consensus 162 ~~~~pksis~r~~~yl~~~ 180 (299)
.-++-+.-.|-+.+.|+.+
T Consensus 94 ~dGV~~gm~Vi~~~GlVG~ 112 (255)
T 2j5u_A 94 SDGVKPDMAVTTPSGLIGK 112 (255)
T ss_dssp GGTCCTTCEEEETTEEEEE
T ss_pred ccCCCCCCEEEECCccEEE
Confidence 3445555555555555444
No 62
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=34.25 E-value=38 Score=25.33 Aligned_cols=47 Identities=17% Similarity=0.074 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHH
Q 022289 75 HRLQQARLILEYQQLCDHYDLCFSRLQAITRELETLRQQNADLRLANARL 124 (299)
Q Consensus 75 ~rl~~arl~l~~q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L 124 (299)
.|-+....|-+-.+-+..++.- ..++..|.+.||.++..|+.+|..|
T Consensus 23 fReRK~~~i~~LE~~v~~le~~---~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 23 FRKRKEDHLKALETQVVTLKEL---HSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444444444444444432 2345788999999999999988754
No 63
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=33.44 E-value=57 Score=24.56 Aligned_cols=29 Identities=10% Similarity=0.066 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhhhhHHHhhHHHHHHHhh
Q 022289 102 AITRELETLRQQNADLRLANARLLKIITG 130 (299)
Q Consensus 102 ~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~ 130 (299)
..-.+...|..|...|+..|..|..+|+.
T Consensus 51 ~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 51 KLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344455566666677777777666653
No 64
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=32.62 E-value=69 Score=22.60 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=10.4
Q ss_pred HHHHHHHhhhhhHHHhhHHHHHHH
Q 022289 105 RELETLRQQNADLRLANARLLKII 128 (299)
Q Consensus 105 ~E~~~Lr~En~~Lr~~N~~L~~~l 128 (299)
.+++.|-.||.+|+..-..|...+
T Consensus 29 ~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 29 KKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 65
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=32.60 E-value=71 Score=24.36 Aligned_cols=33 Identities=15% Similarity=0.104 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhh
Q 022289 100 LQAITRELETLRQQNADLRLANARLLKIITGSF 132 (299)
Q Consensus 100 L~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~ 132 (299)
+...-.+...|..|...|+..|..|..+|..|.
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444555555667788888888887774
No 66
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=32.36 E-value=1.3e+02 Score=23.87 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=33.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 022289 71 MATEHRLQQARLILEYQQLCDHYDLCFSRLQAITRELETLRQ 112 (299)
Q Consensus 71 ~~t~~rl~~arl~l~~q~~~~ry~lcl~rL~~~~~E~~~Lr~ 112 (299)
.+.+|+|++.+-+| +|-.-=.-.|..||..+...+..+=.
T Consensus 44 ~~Dey~iKkq~evl--~Et~~mipd~~~Rl~~a~~~L~~~l~ 83 (108)
T 1h7c_A 44 DGENYDIKKQAEIL--QESRMMIPDCQRRLEAAYLDLQRILE 83 (108)
T ss_dssp HCSCTHHHHHHHHH--HHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34589999999888 77777788999999999999988765
No 67
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=31.44 E-value=1.5e+02 Score=23.05 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=10.8
Q ss_pred HHHHHhhhhhHHHhhHHHHHHH
Q 022289 107 LETLRQQNADLRLANARLLKII 128 (299)
Q Consensus 107 ~~~Lr~En~~Lr~~N~~L~~~l 128 (299)
++.|..|++.|+.+|..|..+.
T Consensus 55 ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 55 IEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555554433
No 68
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=28.21 E-value=63 Score=24.91 Aligned_cols=56 Identities=20% Similarity=0.199 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhhc
Q 022289 78 QQARLILEYQQLCDHY-------DLCFSRLQAITRELETLRQQNADLRLANARLLKIITGSFH 133 (299)
Q Consensus 78 ~~arl~l~~q~~~~ry-------~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~~ 133 (299)
...-||.|+.++.+-- ++=+.|+-+.+.|-+.|+.|+..++.+=..+..+|..+..
T Consensus 10 evEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEe 72 (77)
T 2w83_C 10 EVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEE 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777765532 3457899999999999999999999999999888887753
No 69
>2kuo_A Aprataxin and PNK-like factor; aprataxin PNK-like factor (APLF), poly ADP-ribose (PAR), PAR zinc finger (PBZ), DNA damage, ADP-ribose; NMR {Homo sapiens}
Probab=27.05 E-value=22 Score=28.25 Aligned_cols=10 Identities=50% Similarity=1.238 Sum_probs=8.1
Q ss_pred cccCCCCCCc
Q 022289 275 GICPYGHRCH 284 (299)
Q Consensus 275 G~CpyG~rCr 284 (299)
-.|+||..|.
T Consensus 62 p~C~YG~~CY 71 (91)
T 2kuo_A 62 PECPYGPSCY 71 (91)
T ss_dssp CBCTTGGGCC
T ss_pred CCCCCchhhh
Confidence 4699999995
No 70
>2kqb_A Aprataxin and PNK-like factor; ADP-ribosylation, DNA damage, DNA repair, metal-binding, nucleotide-binding, nucleus, zinc, zinc-finger, lyase; NMR {Homo sapiens} PDB: 2kqc_A 2kqd_A* 2kqe_A*
Probab=26.71 E-value=34 Score=27.08 Aligned_cols=10 Identities=50% Similarity=1.238 Sum_probs=0.0
Q ss_pred cccCCCCCCc
Q 022289 275 GICPYGHRCH 284 (299)
Q Consensus 275 G~CpyG~rCr 284 (299)
-.|+||..|.
T Consensus 57 p~C~YG~~CY 66 (89)
T 2kqb_A 57 PECPYGPSCY 66 (89)
T ss_dssp ----------
T ss_pred CCCCCchhhh
Confidence 4699999995
No 71
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=26.09 E-value=3.1e+02 Score=24.07 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhhc
Q 022289 78 QQARLILEYQQLCDHYDLCFSRLQAITRELETLRQQNADLRLANARLLKIITGSFH 133 (299)
Q Consensus 78 ~~arl~l~~q~~~~ry~lcl~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~~ 133 (299)
+.++|-.+.+.+-++|+-.-+ ++...+..|..|.+.||..|..|...|-.|..
T Consensus 64 ~~~~L~~E~e~~k~K~~~~~~---e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq 116 (189)
T 2v71_A 64 DNQRLKYEVEALKEKLEHQYA---QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 116 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777755432 33444777777777777777777777766653
No 72
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=25.87 E-value=1.3e+02 Score=23.88 Aligned_cols=37 Identities=11% Similarity=0.222 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 022289 73 TEHRLQQARLILEYQQLCDHYDLCFSRLQAITRELETLR 111 (299)
Q Consensus 73 t~~rl~~arl~l~~q~~~~ry~lcl~rL~~~~~E~~~Lr 111 (299)
.+|+|++.+-+| +|-.-=.-.|..||.++..++..+=
T Consensus 44 dey~iKkq~evl--~Et~~mipd~~~Rl~~a~~~L~~~l 80 (106)
T 1qsd_A 44 DPYDLKKQEEVL--DDTKRLLPTLYEKIREFKEDLEQFL 80 (106)
T ss_dssp CHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 589999988888 7777778899999999999988765
No 73
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=25.40 E-value=1.2e+02 Score=24.64 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=33.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 022289 72 ATEHRLQQARLILEYQQLCDHYDLCFSRLQAITRELETLRQQ 113 (299)
Q Consensus 72 ~t~~rl~~arl~l~~q~~~~ry~lcl~rL~~~~~E~~~Lr~E 113 (299)
+.+|+|++.+-+| +|-.-=.-.|..||..+..++..+=.|
T Consensus 46 ~dey~iKkq~evL--~Et~~mipd~~~RL~~a~~~L~~~l~~ 85 (116)
T 3mxz_A 46 ADPYDLKQQENVL--GESRMMIPDCHKRLESALADLKSTLAE 85 (116)
T ss_dssp CCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4579998888888 666667789999999999999886654
No 74
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=24.55 E-value=99 Score=23.11 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhh
Q 022289 98 SRLQAITRELETLRQQNADLRLANARLLKIITGS 131 (299)
Q Consensus 98 ~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~ 131 (299)
+-|.+|++=+..|+.++..|...|..|...|..+
T Consensus 43 ~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 43 AVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456677777777777777777777777776643
No 75
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=23.94 E-value=1.2e+02 Score=21.70 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhh
Q 022289 98 SRLQAITRELETLRQQNADLRLANARLLKIITG 130 (299)
Q Consensus 98 ~rL~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~ 130 (299)
..+.+...|-+.|+.+...|+-+|..|..+|..
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356667777777888888888888777776653
No 76
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=23.82 E-value=81 Score=24.21 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhhcc
Q 022289 100 LQAITRELETLRQQNADLRLANARLLKIITGSFHR 134 (299)
Q Consensus 100 L~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~~~~~ 134 (299)
+.+...-++.|+.|.++||=.+..+...|+.+..+
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34556677778888888888777777777776543
No 77
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=23.82 E-value=93 Score=23.99 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhhhhHHH-------hhHHHHHHHhhhhc
Q 022289 101 QAITRELETLRQQNADLRL-------ANARLLKIITGSFH 133 (299)
Q Consensus 101 ~~~~~E~~~Lr~En~~Lr~-------~N~~L~~~l~~~~~ 133 (299)
+...+|++.|=.||.+|.. +.+||..++..|++
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~ 44 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTC 44 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457899999999999875 67888888888875
No 78
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=22.84 E-value=1.3e+02 Score=21.42 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhHHHHHHHhh
Q 022289 100 LQAITRELETLRQQNADLRLANARLLKIITG 130 (299)
Q Consensus 100 L~~~~~E~~~Lr~En~~Lr~~N~~L~~~l~~ 130 (299)
+.+...+++.|-.||.+|+..=..|...+..
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666554444444433
No 79
>1pzr_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.38.2.1
Probab=22.03 E-value=84 Score=22.81 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHHh
Q 022289 99 RLQAITRELETLRQQNADLRLA 120 (299)
Q Consensus 99 rL~~~~~E~~~Lr~En~~Lr~~ 120 (299)
+|..++.|+..+|+.+.+|..+
T Consensus 36 yLkrvtadL~r~RrRLreleaa 57 (60)
T 1pzr_A 36 YLKRTVTELDSVTARLREVEHR 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 5889999999999998888764
No 80
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=20.64 E-value=1.3e+02 Score=23.34 Aligned_cols=29 Identities=21% Similarity=0.166 Sum_probs=19.1
Q ss_pred HHHHHHHHhhhhhHHH---hhHHHHHHHhhhh
Q 022289 104 TRELETLRQQNADLRL---ANARLLKIITGSF 132 (299)
Q Consensus 104 ~~E~~~Lr~En~~Lr~---~N~~L~~~l~~~~ 132 (299)
-.|.+.++.|..+++. +|..|..+|-.|.
T Consensus 45 q~e~~r~~e~e~r~k~le~~n~~l~~riqELE 76 (83)
T 4ath_A 45 QREQQRAKDLENRQKKLEHANRHLLLRVQELE 76 (83)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3455555555554444 8999999988775
Done!