BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022290
(299 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WWZ|C Chain C, Tab2 Nzf Domain In Complex With Lys63-Linked Di-Ubiquitin,
P212121
Length = 32
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 222 DVGQMWQCNMCTLLNQPLALTCEACGTQRN 251
D G W C CT LN P + CE C R+
Sbjct: 2 DEGAQWNCTACTFLNHPALIRCEQCEMPRH 31
>pdb|2WX0|C Chain C, Tab2 Nzf Domain In Complex With Lys63-Linked Di-Ubiquitin,
P21
pdb|2WX0|G Chain G, Tab2 Nzf Domain In Complex With Lys63-Linked Di-Ubiquitin,
P21
pdb|2WX1|C Chain C, Tab2 Nzf Domain In Complex With Lys63-Linked
Tri-Ubiquitin, P212121
Length = 31
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 222 DVGQMWQCNMCTLLNQPLALTCEACGTQRN 251
D G W C CT LN P + CE C R+
Sbjct: 1 DEGAQWNCTACTFLNHPALIRCEQCEMPRH 30
>pdb|3A9J|C Chain C, Crystal Structure Of The Mouse Tab2-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
Length = 34
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 222 DVGQMWQCNMCTLLNQPLALTCEACGTQRN 251
+G W C CT LN P + CE C R+
Sbjct: 4 HMGAQWNCTACTFLNHPALIRCEQCEMPRH 33
>pdb|2EBQ|A Chain A, Solution Structure Of The Second Zf-Ranbp Domain From
Human Nuclear Pore Complex Protein Nup153
Length = 47
Score = 29.3 bits (64), Expect = 3.0, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 227 WQCNMCTLLNQPLALTCEACGTQR 250
W C+ C + N+P A+ C AC T +
Sbjct: 12 WDCDTCLVQNKPEAIKCVACETPK 35
>pdb|2GQE|A Chain A, Molecular Characterization Of The Ran Binding Zinc Finger
Domain
Length = 32
Score = 28.9 bits (63), Expect = 3.9, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 227 WQCNMCTLLNQPLALTCEACGTQR 250
W C+ C + N+P A+ C AC T +
Sbjct: 8 WDCDTCLVQNKPEAIKCVACETPK 31
>pdb|1NJ3|A Chain A, Structure And Ubiquitin Interactions Of The Conserved Nzf
Domain Of Npl4
pdb|1Q5W|A Chain A, Ubiquitin Recognition By Npl4 Zinc-Fingers
Length = 31
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 226 MWQCNMCTLLNQPLALTCEACGTQRN 251
MW C CT +NQP CE C R
Sbjct: 6 MWACQHCTFMNQPGTGHCEMCSLPRT 31
>pdb|3A9K|C Chain C, Crystal Structure Of The Mouse Tab3-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
Length = 34
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 223 VGQMWQCNMCTLLNQPLALTCEACGTQR 250
+G W C+ CT LN P CE C R
Sbjct: 5 MGAPWNCDSCTFLNHPALNRCEQCEMPR 32
>pdb|3B08|B Chain B, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
pdb|3B08|E Chain E, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
pdb|3B08|H Chain H, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
pdb|3B08|K Chain K, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
pdb|3B0A|B Chain B, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
pdb|3B0A|E Chain E, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
Length = 64
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 227 WQCNMCTLLNQPLALTCEACGTQRNKS 253
WQC CT +N+P CE C R ++
Sbjct: 9 WQCPGCTFINKPTRPGCEMCCRARPET 35
>pdb|3CH5|B Chain B, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
Length = 52
Score = 28.1 bits (61), Expect = 6.0, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 227 WQCNMCTLLNQPLALTCEACGTQR 250
W C+ C + N+P A+ C AC T +
Sbjct: 23 WDCDTCLVQNKPEAVKCVACETPK 46
>pdb|2K0C|A Chain A, Zinc-Finger 2 Of Nup153
Length = 53
Score = 28.1 bits (61), Expect = 6.2, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 227 WQCNMCTLLNQPLALTCEACGTQR 250
W C+ C + N+P A+ C AC T +
Sbjct: 23 WDCDTCLVQNKPEAVKCVACETPK 46
>pdb|2CRC|A Chain A, Solution Structure Of The Zf-Ranbp Domain Of The Protein
Hbv Associated Factor
Length = 52
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 227 WQCNMCTLLNQPLALTCEACGTQRNKS 253
WQC CT +N+P CE C R ++
Sbjct: 11 WQCPGCTFINKPTRPGCEMCCRARPEA 37
>pdb|2WCZ|A Chain A, 1.6a Resolution Structure Of Archaeoglobus Fulgidus Hjc, A
Holliday Junction Resolvase From An Archaeal
Hyperthermophile
pdb|2WCZ|B Chain B, 1.6a Resolution Structure Of Archaeoglobus Fulgidus Hjc, A
Holliday Junction Resolvase From An Archaeal
Hyperthermophile
pdb|2WIW|A Chain A, Crystal Structures Of Holliday Junction Resolvases From
Archaeoglobus Fulgidus Bound To Dna Substrate
pdb|2WIW|B Chain B, Crystal Structures Of Holliday Junction Resolvases From
Archaeoglobus Fulgidus Bound To Dna Substrate
pdb|2WIZ|A Chain A, Crystal Structures Of Holliday Junction Resolvases From
Archaeoglobus Fulgidus Bound To Dna Substrate
pdb|2WIZ|B Chain B, Crystal Structures Of Holliday Junction Resolvases From
Archaeoglobus Fulgidus Bound To Dna Substrate
pdb|2WJ0|A Chain A, Crystal Structures Of Holliday Junction Resolvases From
Archaeoglobus Fulgidus Bound To Dna Substrate
pdb|2WJ0|B Chain B, Crystal Structures Of Holliday Junction Resolvases From
Archaeoglobus Fulgidus Bound To Dna Substrate
Length = 139
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 21 LLGINIGGGAEVKLRLRRPNREWDFFPYEQILDT 54
L+ G GAE + L+ P ++W FFP + + T
Sbjct: 73 LVTFARGFGAEAYVALKLPRKKWRFFPVQMLERT 106
>pdb|3GJ7|B Chain B, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|D Chain D, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
Length = 98
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 226 MWQCNMCTLLNQPLALTCEACGTQR 250
W C+ C + N+P A+ C AC T +
Sbjct: 72 TWDCDTCLVQNKPEAVKCVACETPK 96
>pdb|2EBR|A Chain A, Solution Structure Of The Fourth Zf-Ranbp Domain From
Human Nuclear Pore Complex Protein Nup153
Length = 47
Score = 27.7 bits (60), Expect = 8.7, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 260 WSCKFCTLDNSSLSERCLAC 279
W C+ C + N + S +CLAC
Sbjct: 12 WDCELCLVQNKADSTKCLAC 31
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,919,548
Number of Sequences: 62578
Number of extensions: 335679
Number of successful extensions: 562
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 40
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)