Query 022290
Match_columns 299
No_of_seqs 331 out of 1170
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 03:05:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022290.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022290hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gj7_B Nuclear pore complex pr 99.4 1.3E-13 4.5E-18 110.2 2.1 62 224-285 7-98 (98)
2 3gj8_B Nuclear pore complex pr 99.3 2.5E-13 8.4E-18 107.3 2.1 62 224-285 6-91 (92)
3 3gj3_B Nuclear pore complex pr 98.6 1.5E-08 5.3E-13 65.6 2.2 29 223-251 4-32 (33)
4 1w7p_D VPS36P, YLR417W; ESCRT- 98.4 2.6E-08 8.8E-13 100.7 0.0 63 223-285 114-206 (566)
5 3a9j_C Mitogen-activated prote 98.4 9.3E-08 3.2E-12 61.9 2.5 27 225-251 7-33 (34)
6 2d9g_A YY1-associated factor 2 98.4 1.8E-07 6.3E-12 66.6 3.9 30 224-253 9-38 (53)
7 3gj3_B Nuclear pore complex pr 98.3 1.8E-07 6.2E-12 60.5 2.1 30 256-285 4-33 (33)
8 1nj3_A NPL4; NZF domain, rubre 98.3 2.7E-07 9.4E-12 58.5 2.6 26 225-250 5-30 (31)
9 3gj5_B Nuclear pore complex pr 98.2 4.2E-07 1.4E-11 59.2 2.2 30 223-252 4-33 (34)
10 2crc_A Ubiquitin conjugating e 98.2 8.4E-07 2.9E-11 63.0 3.8 29 225-253 9-37 (52)
11 2d9g_A YY1-associated factor 2 98.2 7.4E-07 2.5E-11 63.5 3.0 32 256-287 8-39 (53)
12 3a9j_C Mitogen-activated prote 98.2 6.7E-07 2.3E-11 57.8 2.3 28 257-284 6-33 (34)
13 1nj3_A NPL4; NZF domain, rubre 98.2 8.4E-07 2.9E-11 56.2 2.3 27 257-283 4-30 (31)
14 2ebq_A Nuclear pore complex pr 98.1 2E-06 6.8E-11 59.8 3.8 34 221-254 6-39 (47)
15 3gj5_B Nuclear pore complex pr 98.1 1.2E-06 4E-11 57.1 2.0 30 256-285 4-33 (34)
16 2crc_A Ubiquitin conjugating e 98.0 5.1E-06 1.8E-10 58.9 4.4 31 257-287 8-38 (52)
17 2ebr_A Nuclear pore complex pr 97.9 5.5E-06 1.9E-10 57.6 3.4 29 225-253 10-38 (47)
18 2ebv_A Nuclear pore complex pr 97.9 1.9E-05 6.5E-10 57.0 6.0 31 222-252 27-57 (57)
19 3b08_B Ranbp-type and C3HC4-ty 97.9 5.2E-06 1.8E-10 61.3 2.8 29 225-253 7-35 (64)
20 2ebr_A Nuclear pore complex pr 97.9 9.5E-06 3.3E-10 56.4 3.7 34 256-289 8-41 (47)
21 3b08_B Ranbp-type and C3HC4-ty 97.9 1.1E-05 3.8E-10 59.5 3.8 31 257-287 6-36 (64)
22 2ebq_A Nuclear pore complex pr 97.8 8.2E-06 2.8E-10 56.7 2.5 35 255-289 7-41 (47)
23 3gj7_B Nuclear pore complex pr 97.5 3.2E-05 1.1E-09 61.5 2.2 30 223-252 69-98 (98)
24 2k1p_A Zinc finger RAN-binding 97.4 9.6E-05 3.3E-09 47.5 3.3 29 224-252 4-32 (33)
25 2lk0_A RNA-binding protein 5; 97.4 5.4E-05 1.9E-09 48.3 2.1 29 224-252 3-31 (32)
26 2ebv_A Nuclear pore complex pr 97.4 8.8E-05 3E-09 53.5 3.3 31 255-285 27-57 (57)
27 3gj8_B Nuclear pore complex pr 97.3 9.3E-05 3.2E-09 57.9 2.3 30 223-252 62-91 (92)
28 2k1p_A Zinc finger RAN-binding 97.3 0.00021 7.1E-09 45.9 3.3 30 256-285 3-32 (33)
29 2lk0_A RNA-binding protein 5; 97.1 0.00015 5.2E-09 46.2 1.6 30 256-285 2-31 (32)
30 1n0z_A ZNF265; zinc finger, RN 96.9 0.00086 2.9E-08 46.0 4.2 32 221-252 9-42 (45)
31 1n0z_A ZNF265; zinc finger, RN 96.5 0.002 6.7E-08 44.2 3.5 32 255-286 10-43 (45)
32 1w7p_D VPS36P, YLR417W; ESCRT- 94.0 0.0094 3.2E-07 60.3 0.0 28 225-252 179-206 (566)
33 2j9u_B VPS36, vacuolar protein 93.0 0.028 9.7E-07 42.5 1.2 29 223-251 14-51 (76)
34 3cqb_A Probable protease HTPX 90.9 0.085 2.9E-06 41.6 1.7 33 31-67 67-99 (107)
35 2cr8_A MDM4 protein; ZF-ranbp 87.4 0.49 1.7E-05 33.2 3.3 31 221-251 6-36 (53)
36 1e8j_A Rubredoxin; iron-sulfur 85.6 0.47 1.6E-05 33.2 2.5 10 226-235 3-12 (52)
37 6rxn_A Rubredoxin; electron tr 84.3 0.39 1.3E-05 32.8 1.5 11 273-283 30-40 (46)
38 2j9u_B VPS36, vacuolar protein 83.6 0.36 1.2E-05 36.4 1.2 27 258-284 16-51 (76)
39 2ddf_A ADAM 17; hydrolase; HET 82.7 0.65 2.2E-05 41.4 2.8 25 46-70 177-201 (257)
40 4rxn_A Rubredoxin; electron tr 81.0 0.66 2.3E-05 32.7 1.7 9 258-266 35-43 (54)
41 3b8z_A Protein adamts-5; alpha 79.7 0.76 2.6E-05 40.0 2.1 21 50-70 140-160 (217)
42 2i47_A ADAM 17; TACE-inhibitor 79.3 0.98 3.4E-05 41.0 2.8 25 46-70 183-207 (288)
43 1bud_A Protein (acutolysin A); 79.0 0.89 3E-05 39.0 2.2 21 50-70 132-152 (197)
44 1qua_A Acutolysin-C, hemorrhag 78.7 0.89 3E-05 39.0 2.1 20 51-70 135-154 (197)
45 1atl_A Atrolysin C; metalloend 78.2 0.96 3.3E-05 39.0 2.2 21 50-70 135-155 (202)
46 2rjq_A Adamts-5; metalloprotea 78.2 0.86 2.9E-05 43.0 2.1 20 51-70 143-162 (378)
47 2c6a_A Ubiquitin-protein ligas 78.2 1.1 3.9E-05 30.6 2.1 27 225-251 12-38 (46)
48 2w15_A Zinc metalloproteinase 78.0 0.99 3.4E-05 38.8 2.2 21 50-70 135-155 (202)
49 2v4b_A Adamts-1; zymogen, prot 78.0 0.89 3.1E-05 41.5 2.1 20 51-70 143-162 (300)
50 1kuf_A Atrolysin E, metallopro 77.6 1 3.5E-05 38.9 2.2 21 50-70 137-157 (203)
51 1yp1_A FII; FII hydrolase; 1.9 77.6 1 3.5E-05 38.8 2.2 22 50-71 134-155 (202)
52 4dd8_A Disintegrin and metallo 77.0 1.3 4.5E-05 38.3 2.8 23 48-70 130-152 (208)
53 2rjp_A Adamts-4; metalloprotea 76.9 0.99 3.4E-05 41.6 2.1 21 50-70 142-162 (316)
54 1yk4_A Rubredoxin, RD; electro 76.4 0.98 3.3E-05 31.5 1.4 10 226-235 2-11 (52)
55 1yuz_A Nigerythrin; rubrythrin 75.7 0.9 3.1E-05 39.8 1.3 13 225-237 170-182 (202)
56 1dx8_A Rubredoxin; electron tr 75.6 1.1 3.6E-05 33.2 1.5 11 225-235 6-16 (70)
57 3pwf_A Rubrerythrin; non heme 74.0 1.1 3.7E-05 38.3 1.4 26 224-249 136-162 (170)
58 2cr8_A MDM4 protein; ZF-ranbp 73.9 3.1 0.0001 29.1 3.4 33 256-288 8-40 (53)
59 2kn9_A Rubredoxin; metalloprot 73.7 0.95 3.2E-05 34.5 0.8 42 224-267 25-68 (81)
60 2e3x_A Coagulation factor X-ac 73.7 1.7 5.8E-05 42.1 2.9 23 49-71 137-159 (427)
61 1r55_A ADAM 33; metalloproteas 73.6 1.4 4.9E-05 38.3 2.1 21 50-70 135-155 (214)
62 2ero_A VAP-1, vascular apoptos 72.9 1.6 5.6E-05 42.1 2.5 24 48-71 143-166 (427)
63 2v3b_B Rubredoxin 2, rubredoxi 72.3 1.1 3.8E-05 31.6 0.8 10 226-235 3-12 (55)
64 2dw0_A Catrocollastatin; apopt 72.2 1.7 6E-05 41.9 2.5 23 48-70 134-156 (419)
65 2c6a_A Ubiquitin-protein ligas 71.7 3.1 0.00011 28.4 2.9 33 257-289 11-43 (46)
66 3c37_A Peptidase, M48 family; 71.6 1.4 4.7E-05 39.5 1.5 40 29-72 81-121 (253)
67 3shb_A E3 ubiquitin-protein li 69.1 4.1 0.00014 30.4 3.4 45 222-266 17-75 (77)
68 3k7l_A Atragin; SVMP, metallop 68.7 2.1 7.2E-05 41.5 2.2 22 49-70 142-163 (422)
69 3k7n_A K-like; SVMP, hydrolase 68.7 2.1 7.3E-05 41.1 2.2 22 49-70 137-158 (397)
70 2ysm_A Myeloid/lymphoid or mix 68.2 4.2 0.00014 31.7 3.6 10 224-233 46-55 (111)
71 2e6s_A E3 ubiquitin-protein li 65.6 14 0.00049 27.3 5.9 43 224-266 19-75 (77)
72 4aw6_A CAAX prenyl protease 1 64.8 2.1 7.3E-05 42.3 1.4 22 46-67 324-345 (482)
73 1s24_A Rubredoxin 2; electron 64.8 1.8 6.2E-05 33.4 0.7 43 223-267 32-76 (87)
74 2ejq_A Hypothetical protein TT 64.3 2.9 9.8E-05 34.4 1.9 57 7-63 27-101 (130)
75 3asl_A E3 ubiquitin-protein li 64.2 6.1 0.00021 28.7 3.5 45 223-267 10-68 (70)
76 1g12_A Peptidyl-Lys metalloend 64.2 2.1 7.3E-05 36.2 1.1 14 50-63 110-123 (167)
77 4axq_A Archaemetzincin; metall 64.1 3.5 0.00012 35.0 2.4 23 48-70 111-133 (163)
78 3v43_A Histone acetyltransfera 62.6 6.2 0.00021 31.0 3.5 10 224-233 53-62 (112)
79 1eb6_A Neutral protease II; me 61.6 2.6 9.1E-05 35.9 1.2 15 50-64 121-135 (177)
80 3ebh_A PFA-M1, M1 family amino 61.1 3.7 0.00013 43.5 2.5 19 48-66 292-310 (889)
81 3j21_g 50S ribosomal protein L 61.1 3.2 0.00011 28.9 1.4 24 259-282 14-37 (51)
82 2kwj_A Zinc finger protein DPF 60.9 3.3 0.00011 32.7 1.7 44 224-267 50-107 (114)
83 1fp0_A KAP-1 corepressor; PHD 60.6 12 0.00041 28.7 4.7 48 221-270 20-74 (88)
84 1mm2_A MI2-beta; PHD, zinc fin 60.5 14 0.00049 25.8 4.8 44 223-268 6-56 (61)
85 2kn9_A Rubredoxin; metalloprot 59.6 8.2 0.00028 29.3 3.6 29 258-286 26-73 (81)
86 3u9w_A Leukotriene A-4 hydrola 59.4 2.2 7.7E-05 42.8 0.5 20 48-67 284-303 (608)
87 2gtq_A Aminopeptidase N; alani 59.3 4.2 0.00014 42.8 2.5 19 48-66 284-302 (867)
88 3g5c_A ADAM 22; alpha/beta fol 59.3 3.6 0.00012 41.0 1.9 22 50-71 133-154 (510)
89 1lko_A Rubrerythrin all-iron(I 59.1 2.5 8.7E-05 36.4 0.7 11 226-236 155-165 (191)
90 3o36_A Transcription intermedi 58.9 19 0.00065 30.3 6.2 52 226-279 4-63 (184)
91 3e11_A Predicted zincin-like m 58.1 4.2 0.00014 32.6 1.8 17 48-64 87-103 (114)
92 3khi_A Putative metal-dependen 57.0 5.9 0.0002 36.4 2.8 44 21-69 119-162 (267)
93 1xwh_A Autoimmune regulator; P 56.9 7.2 0.00025 27.8 2.7 46 223-270 5-57 (66)
94 1bqb_A Protein (aureolysin); h 56.7 4.2 0.00014 37.9 1.8 24 43-66 130-153 (301)
95 2l5u_A Chromodomain-helicase-D 56.7 12 0.00041 26.2 3.8 45 222-268 7-58 (61)
96 4fke_A Aminopeptidase N; zinc 56.7 4.9 0.00017 42.3 2.5 22 46-67 311-332 (909)
97 4ger_A Gentlyase metalloprotea 56.6 4.3 0.00015 37.9 1.9 25 43-67 121-145 (304)
98 3b34_A Aminopeptidase N; prote 56.6 5 0.00017 42.5 2.5 19 48-66 309-327 (891)
99 1z5h_A Tricorn protease intera 56.3 5.1 0.00017 41.5 2.5 19 48-66 256-274 (780)
100 2yql_A PHD finger protein 21A; 56.3 7.2 0.00025 26.8 2.6 42 223-266 6-54 (56)
101 3dte_A IRRE protein; radiotole 55.4 7.4 0.00025 36.1 3.2 40 21-68 74-113 (301)
102 2xdt_A Endoplasmic reticulum a 55.3 5.4 0.00018 42.0 2.5 19 48-66 299-317 (897)
103 3dnz_A Thermolysin; hydrolase, 52.7 5.4 0.00018 37.5 1.8 25 43-67 128-152 (316)
104 1dl6_A Transcription factor II 52.6 8.5 0.00029 27.0 2.5 34 236-269 7-40 (58)
105 3pwf_A Rubrerythrin; non heme 52.1 5.8 0.0002 33.7 1.8 27 259-285 138-165 (170)
106 2lri_C Autoimmune regulator; Z 51.5 27 0.00092 25.0 5.1 40 226-267 12-58 (66)
107 3ask_A E3 ubiquitin-protein li 51.1 9.4 0.00032 34.2 3.1 43 224-266 167-223 (226)
108 4hc9_A Trans-acting T-cell-spe 50.9 6.2 0.00021 31.7 1.7 25 257-281 57-88 (115)
109 3lmc_A Peptidase, zinc-depende 50.2 8 0.00027 34.3 2.4 22 48-69 140-161 (210)
110 2x7m_A Archaemetzincin; metall 49.8 8.2 0.00028 33.6 2.4 19 49-67 137-155 (195)
111 2g45_A Ubiquitin carboxyl-term 49.5 11 0.00037 30.8 3.0 46 226-281 6-54 (129)
112 3se6_A Endoplasmic reticulum a 49.2 7.9 0.00027 41.3 2.7 19 48-66 361-379 (967)
113 2yt5_A Metal-response element- 48.0 8.1 0.00028 27.2 1.8 48 224-271 4-64 (66)
114 2lbz_A Thuricin17, thurincin H 46.9 8 0.00027 23.6 1.3 17 226-250 1-17 (31)
115 3j21_g 50S ribosomal protein L 46.8 8.3 0.00028 26.8 1.6 25 225-249 13-37 (51)
116 2l43_A N-teminal domain from h 46.2 9.9 0.00034 28.8 2.1 48 223-271 22-78 (88)
117 2k16_A Transcription initiatio 44.8 14 0.00047 26.7 2.6 46 223-268 15-68 (75)
118 1lko_A Rubrerythrin all-iron(I 44.1 7.3 0.00025 33.5 1.2 10 240-249 155-164 (191)
119 3u5n_A E3 ubiquitin-protein li 43.6 19 0.00066 30.9 3.9 55 225-281 6-68 (207)
120 2puy_A PHD finger protein 21A; 42.2 13 0.00046 25.7 2.1 43 225-269 4-53 (60)
121 1cge_A Fibroblast collagenase; 42.2 11 0.00039 31.3 2.1 20 50-69 110-129 (168)
122 2ayj_A 50S ribosomal protein L 42.1 12 0.0004 26.6 1.8 27 223-249 16-42 (56)
123 2jsd_A Matrix metalloproteinas 41.8 9.4 0.00032 31.2 1.5 21 50-70 107-127 (160)
124 2e6r_A Jumonji/ARID domain-con 41.7 19 0.00066 27.3 3.1 48 221-268 11-66 (92)
125 3cia_A Cold-active aminopeptid 41.1 7.4 0.00025 39.0 0.9 17 50-66 293-309 (605)
126 2ovx_A Matrix metalloproteinas 39.7 13 0.00045 30.7 2.1 21 50-70 110-130 (159)
127 2vqx_A Metalloproteinase; ther 39.6 9.2 0.00031 36.2 1.2 24 44-67 149-172 (341)
128 1yuz_A Nigerythrin; rubrythrin 39.5 11 0.00038 32.8 1.6 10 240-249 171-180 (202)
129 3jyw_9 60S ribosomal protein L 39.5 26 0.0009 25.9 3.4 32 241-273 27-58 (72)
130 2xq0_A LTA-4 hydrolase, leukot 39.1 11 0.00037 38.0 1.7 16 51-66 295-310 (632)
131 1wil_A KIAA1045 protein; ring 37.6 38 0.0013 26.0 4.1 47 225-271 14-79 (89)
132 1f62_A Transcription factor WS 37.5 24 0.00083 23.4 2.8 39 229-267 3-49 (51)
133 2ku3_A Bromodomain-containing 37.4 19 0.00065 26.2 2.4 45 223-268 13-66 (71)
134 1hv5_A Stromelysin 3; inhibiti 35.9 16 0.00056 30.2 2.1 21 50-70 112-132 (165)
135 1vq8_Z 50S ribosomal protein L 35.5 6.2 0.00021 30.0 -0.6 33 241-274 28-60 (83)
136 2xs4_A Karilysin protease; hyd 35.0 13 0.00043 30.8 1.2 21 50-70 114-134 (167)
137 2ayj_A 50S ribosomal protein L 34.6 16 0.00054 25.9 1.4 26 257-282 17-42 (56)
138 4fgm_A Aminopeptidase N family 34.4 46 0.0016 33.4 5.4 19 48-66 264-282 (597)
139 1y93_A Macrophage metalloelast 34.1 18 0.00063 29.8 2.1 21 50-70 107-127 (159)
140 2x3c_A Toxic extracellular end 33.7 12 0.00042 35.2 1.0 15 49-63 285-299 (343)
141 1hy7_A Stromelysin-1, MMP-3; m 33.7 14 0.00047 30.9 1.2 21 50-70 112-132 (173)
142 2ect_A Ring finger protein 126 33.5 73 0.0025 22.2 5.0 54 222-287 11-66 (78)
143 1rm8_A MMP-16, matrix metallop 33.2 15 0.00053 30.4 1.5 21 49-69 115-135 (169)
144 2ko5_A Ring finger protein Z; 33.0 18 0.00061 28.4 1.7 49 225-287 27-75 (99)
145 1u4g_A Elastase, pseudolysin; 32.2 15 0.00052 34.1 1.4 23 44-67 128-150 (301)
146 2apo_B Ribosome biogenesis pro 30.9 30 0.001 24.7 2.5 28 260-289 7-34 (60)
147 2xzl_A ATP-dependent helicase 30.7 14 0.00047 38.5 0.9 24 225-248 10-33 (802)
148 1i76_A MMP-8;, neutrophil coll 30.2 17 0.00058 30.1 1.2 21 50-70 111-131 (163)
149 3nqx_A MCP-02, secreted metall 28.8 16 0.00055 34.1 0.9 23 44-67 129-151 (306)
150 1pft_A TFIIB, PFTFIIBN; N-term 28.5 21 0.00073 23.7 1.3 10 258-267 23-32 (50)
151 2wjy_A Regulator of nonsense t 28.0 17 0.00059 37.8 1.0 23 225-247 5-27 (800)
152 1slm_A Stromelysin-1; hydrolas 27.0 27 0.00093 31.3 2.1 21 50-70 194-214 (255)
153 3ayu_A 72 kDa type IV collagen 26.5 20 0.00069 29.9 1.0 20 51-70 114-133 (167)
154 1wev_A Riken cDNA 1110020M19; 26.3 23 0.00079 26.6 1.2 45 226-270 16-74 (88)
155 2y6d_A Matrilysin; hydrolase; 26.1 22 0.00075 29.8 1.2 21 50-70 114-134 (174)
156 2ro1_A Transcription intermedi 25.6 53 0.0018 28.0 3.6 41 228-270 4-51 (189)
157 3a43_A HYPD, hydrogenase nicke 24.5 21 0.0007 29.2 0.7 12 224-235 68-79 (139)
158 2kdx_A HYPA, hydrogenase/ureas 24.0 32 0.0011 27.0 1.8 13 224-236 71-83 (119)
159 2yrc_A Protein transport prote 23.8 19 0.00067 25.4 0.4 15 225-239 32-46 (59)
160 3lqb_A Hatching enzyme, LOC792 23.5 26 0.00089 30.4 1.2 19 52-70 94-112 (199)
161 3edh_A Bone morphogenetic prot 22.8 25 0.00085 30.4 0.9 19 52-70 88-106 (201)
162 1lml_A Leishmanolysin; metallo 22.7 32 0.0011 33.7 1.8 18 48-65 156-173 (478)
163 830c_A MMP-13, MMP-13; matrix 22.5 35 0.0012 28.6 1.8 21 50-70 112-132 (168)
164 1c7k_A NCNP, zinc endoprotease 22.2 33 0.0011 28.1 1.5 21 50-70 76-96 (132)
165 3ihp_A Ubiquitin carboxyl-term 21.8 58 0.002 34.1 3.7 48 224-281 185-235 (854)
166 1ffk_W Ribosomal protein L37AE 21.5 23 0.00079 26.3 0.4 30 242-272 29-58 (73)
167 3nyb_B Protein AIR2; polya RNA 21.3 1.2E+02 0.0041 22.6 4.4 41 241-281 6-54 (83)
168 3j21_i 50S ribosomal protein L 20.6 23 0.00079 27.0 0.2 30 241-271 36-65 (83)
169 3ma2_D Matrix metalloproteinas 20.6 45 0.0015 28.3 2.1 21 49-69 120-140 (181)
170 3iz5_m 60S ribosomal protein L 20.6 30 0.001 26.8 0.9 31 241-272 37-67 (92)
171 2aus_D NOP10, ribosome biogene 20.4 42 0.0014 24.0 1.5 27 260-288 6-32 (60)
172 3cmn_A Putative hydrolase; PSI 20.3 38 0.0013 32.4 1.8 37 46-82 173-209 (372)
173 4dv8_A Lethal factor; endopept 20.2 33 0.0011 34.0 1.3 13 52-64 431-443 (526)
174 1weu_A Inhibitor of growth fam 20.1 2.9E+02 0.0098 20.9 8.8 46 224-270 34-87 (91)
No 1
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=99.36 E-value=1.3e-13 Score=110.24 Aligned_cols=62 Identities=27% Similarity=0.673 Sum_probs=26.2
Q ss_pred CCCccCCccccccccCCccccccCCCCCCCC------------------------------CCCCCcccCCcccccCCCC
Q 022290 224 GQMWQCNMCTLLNQPLALTCEACGTQRNKSV------------------------------GNLKGWSCKFCTLDNSSLS 273 (299)
Q Consensus 224 ~~~W~C~~CT~~N~~~a~~C~aCgt~rp~~~------------------------------~~~~~W~C~~Ct~~N~~~~ 273 (299)
...|.|+.|++.|...+.+|.+|+.+|+... .+.+.|.|.+|++.|....
T Consensus 7 ~~~W~C~~C~~~N~~~~~kC~aC~~pr~~~~~~~~~~~~~~~s~~~~~~~~~~~gfgd~fk~~~g~W~C~~C~~~N~~~~ 86 (98)
T 3gj7_B 7 GSSWQCDTCLLQNKVTDNKCIACQAAKLPLKETAKQTGIGTPSKSDKPASTSGTGFGDKFKPAIGTWDCDTCLVQNKPEA 86 (98)
T ss_dssp ----------------------------------------------------------------CCEECTTTCCEECTTC
T ss_pred CCcccCCccccCChhhcccccccCCCCCCCcccccccCccCcccccccccccccchhhccCCCCCcccCCcCcCCChhhc
Confidence 3579999999999999999999999987421 2457899999999999999
Q ss_pred ccccccCCCCCC
Q 022290 274 ERCLACGEWRYS 285 (299)
Q Consensus 274 ~~C~~Cg~~r~~ 285 (299)
.+|.+|+++|+.
T Consensus 87 ~~C~aC~tpkPg 98 (98)
T 3gj7_B 87 VKCVACETPKPG 98 (98)
T ss_dssp SBCTTTCCBCC-
T ss_pred ceecccCCCCCC
Confidence 999999999973
No 2
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=99.33 E-value=2.5e-13 Score=107.25 Aligned_cols=62 Identities=24% Similarity=0.669 Sum_probs=26.4
Q ss_pred CCCccCCccccccccCCccccccCCCCCCCC------------------------CCCCCcccCCcccccCCCCcccccc
Q 022290 224 GQMWQCNMCTLLNQPLALTCEACGTQRNKSV------------------------GNLKGWSCKFCTLDNSSLSERCLAC 279 (299)
Q Consensus 224 ~~~W~C~~CT~~N~~~a~~C~aCgt~rp~~~------------------------~~~~~W~C~~Ct~~N~~~~~~C~~C 279 (299)
.++|.|+.|+++|+..+.+|.+|+++||... .+.+.|.|..|+++|+....+|.+|
T Consensus 6 ~g~W~C~~C~~~N~~~~~~C~~C~~pkp~~~~~~~~~~~~~~~~~~~~~g~~~f~~~~g~W~C~~C~~~N~a~~~~C~~C 85 (92)
T 3gj8_B 6 VGSWECPVCCVSNKAEDSRCVSCTSEKPGLVSASSSNSVPVSLPSGGCLGLDKFKKPEGSWDCEVCLVQNKADSTKCIAC 85 (92)
T ss_dssp ----------------------------------------------------------CCEECTTTCCEECSSCSBCTTT
T ss_pred CcCCCCCcCCCEeccccceecccCCCCCCCCCccccccCcccccccccccccccCCCCCcccCCcCCcCChhhccccccc
Confidence 4689999999999999999999999998532 1468999999999999999999999
Q ss_pred CCCCCC
Q 022290 280 GEWRYS 285 (299)
Q Consensus 280 g~~r~~ 285 (299)
+++|+.
T Consensus 86 ~~pkp~ 91 (92)
T 3gj8_B 86 ESAKPG 91 (92)
T ss_dssp CCBCC-
T ss_pred CCCCCC
Confidence 999975
No 3
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=98.59 E-value=1.5e-08 Score=65.56 Aligned_cols=29 Identities=34% Similarity=0.865 Sum_probs=24.1
Q ss_pred CCCCccCCccccccccCCccccccCCCCC
Q 022290 223 VGQMWQCNMCTLLNQPLALTCEACGTQRN 251 (299)
Q Consensus 223 ~~~~W~C~~CT~~N~~~a~~C~aCgt~rp 251 (299)
..++|+|+.||++|.+.+.+|++|.++||
T Consensus 4 ~~g~W~C~~C~~~N~~~~~kC~aC~tpkP 32 (33)
T 3gj3_B 4 GSGTWDCDTCLVQNKPEAVKCVACETPKP 32 (33)
T ss_dssp --CCEECTTTCCEECTTCSBCTTTCCBCC
T ss_pred CCCceeCCcccCCCccccCEEcccCCCCC
Confidence 34679999999999999999999998887
No 4
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=98.43 E-value=2.6e-08 Score=100.70 Aligned_cols=63 Identities=25% Similarity=0.560 Sum_probs=0.0
Q ss_pred CCCCccCCccccccccC---------CccccccCCCCCCCC---------------------CCCCCcccCCcccccCCC
Q 022290 223 VGQMWQCNMCTLLNQPL---------ALTCEACGTQRNKSV---------------------GNLKGWSCKFCTLDNSSL 272 (299)
Q Consensus 223 ~~~~W~C~~CT~~N~~~---------a~~C~aCgt~rp~~~---------------------~~~~~W~C~~Ct~~N~~~ 272 (299)
....|.|+.|+|.|+.. ...|.+||.+.+... .....-.|++|||.|++.
T Consensus 114 ~~~tWvC~ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~~~~~k~~i~~~~~~~~~~~~~~~~~~~~~~~CP~CTF~NHPs 193 (566)
T 1w7p_D 114 VVSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINCSNAIDPNANPQNQFGVNSENICPACTFANHPQ 193 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccceeccccccCCCCCCCCCcccCCCCcccccCCCCchhhhhhhhhccccCCCcccCccccccccCCCCCcccccCChh
Confidence 35689999999999963 357999998865322 011346799999999999
Q ss_pred CccccccCCCCCC
Q 022290 273 SERCLACGEWRYS 285 (299)
Q Consensus 273 ~~~C~~Cg~~r~~ 285 (299)
...|+|||++..+
T Consensus 194 l~~CEiCg~~L~~ 206 (566)
T 1w7p_D 194 IGNCEICGHRLPN 206 (566)
T ss_dssp -------------
T ss_pred hhcccccCCcCCC
Confidence 9999999999876
No 5
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=98.42 E-value=9.3e-08 Score=61.92 Aligned_cols=27 Identities=41% Similarity=1.091 Sum_probs=21.6
Q ss_pred CCccCCccccccccCCccccccCCCCC
Q 022290 225 QMWQCNMCTLLNQPLALTCEACGTQRN 251 (299)
Q Consensus 225 ~~W~C~~CT~~N~~~a~~C~aCgt~rp 251 (299)
..|.|+.|||+|.+....|++|+++|+
T Consensus 7 ~~W~C~~CT~~N~~~~~~Ce~C~~~r~ 33 (34)
T 3a9j_C 7 AQWNCTACTFLNHPALIRCEQCEMPRH 33 (34)
T ss_dssp CCEECTTTCCEECTTCSBCTTTCCBSC
T ss_pred CcCCCCCCccccCCCCCeeCCCCCcCc
Confidence 468888888888888888888887765
No 6
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.41 E-value=1.8e-07 Score=66.61 Aligned_cols=30 Identities=30% Similarity=0.824 Sum_probs=23.3
Q ss_pred CCCccCCccccccccCCccccccCCCCCCC
Q 022290 224 GQMWQCNMCTLLNQPLALTCEACGTQRNKS 253 (299)
Q Consensus 224 ~~~W~C~~CT~~N~~~a~~C~aCgt~rp~~ 253 (299)
...|.|+.|||+|...+..|++|+++|+.+
T Consensus 9 ~~~W~C~~CT~~N~~~~~~C~~C~~pr~~s 38 (53)
T 2d9g_A 9 EGYWDCSVCTFRNSAEAFKCMMCDVRKGTS 38 (53)
T ss_dssp CCCEECSSSCCEECSSCSSCSSSCCCCCCC
T ss_pred CCCcCCCCCccCCCCCCCccCCCCCcCCcc
Confidence 346888888888888888888888887754
No 7
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=98.32 E-value=1.8e-07 Score=60.51 Aligned_cols=30 Identities=23% Similarity=0.647 Sum_probs=26.2
Q ss_pred CCCCcccCCcccccCCCCccccccCCCCCC
Q 022290 256 NLKGWSCKFCTLDNSSLSERCLACGEWRYS 285 (299)
Q Consensus 256 ~~~~W~C~~Ct~~N~~~~~~C~~Cg~~r~~ 285 (299)
..+.|.|..||+.|.+...+|.+|.++|+.
T Consensus 4 ~~g~W~C~~C~~~N~~~~~kC~aC~tpkPg 33 (33)
T 3gj3_B 4 GSGTWDCDTCLVQNKPEAVKCVACETPKPG 33 (33)
T ss_dssp --CCEECTTTCCEECTTCSBCTTTCCBCC-
T ss_pred CCCceeCCcccCCCccccCEEcccCCCCCC
Confidence 457899999999999999999999999973
No 8
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=98.31 E-value=2.7e-07 Score=58.47 Aligned_cols=26 Identities=46% Similarity=1.062 Sum_probs=19.9
Q ss_pred CCccCCccccccccCCccccccCCCC
Q 022290 225 QMWQCNMCTLLNQPLALTCEACGTQR 250 (299)
Q Consensus 225 ~~W~C~~CT~~N~~~a~~C~aCgt~r 250 (299)
..|.|+.|||+|++....|++|+++|
T Consensus 5 ~~W~C~~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 5 AMWACQHCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp CCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred ccccCCcccccCCCCCCccCCcCCCC
Confidence 46888888888888877888887765
No 9
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=98.23 E-value=4.2e-07 Score=59.17 Aligned_cols=30 Identities=23% Similarity=0.663 Sum_probs=21.0
Q ss_pred CCCCccCCccccccccCCccccccCCCCCC
Q 022290 223 VGQMWQCNMCTLLNQPLALTCEACGTQRNK 252 (299)
Q Consensus 223 ~~~~W~C~~CT~~N~~~a~~C~aCgt~rp~ 252 (299)
..+.|.|+.|++.|..++.+|.+|+++||.
T Consensus 4 ~~G~W~C~~C~v~N~~~~~kC~aCet~Kpg 33 (34)
T 3gj5_B 4 GSGSWDCEVCLVQNKADSTKCIACESAKPG 33 (34)
T ss_dssp --CCEECTTTCCEECSSCSBCTTTCCBC--
T ss_pred CCCceECCeeEeECccccCEEcccCCcCCC
Confidence 346788888888888888888888887764
No 10
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=98.22 E-value=8.4e-07 Score=63.01 Aligned_cols=29 Identities=38% Similarity=0.862 Sum_probs=22.2
Q ss_pred CCccCCccccccccCCccccccCCCCCCC
Q 022290 225 QMWQCNMCTLLNQPLALTCEACGTQRNKS 253 (299)
Q Consensus 225 ~~W~C~~CT~~N~~~a~~C~aCgt~rp~~ 253 (299)
..|.|+.|||+|+.....|++|+.+|+..
T Consensus 9 ~~W~Cp~CTf~N~p~~~~CemC~~prp~~ 37 (52)
T 2crc_A 9 VGWQCPGCTFINKPTRPGCEMCCRARPEA 37 (52)
T ss_dssp SSBCCTTTCCCBCTTCSSCSSSCCCCCTT
T ss_pred CCccCCCcccccCCCCCeeCCCCCcCCcc
Confidence 46888888888888888888888777653
No 11
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.19 E-value=7.4e-07 Score=63.49 Aligned_cols=32 Identities=25% Similarity=0.649 Sum_probs=28.6
Q ss_pred CCCCcccCCcccccCCCCccccccCCCCCCCC
Q 022290 256 NLKGWSCKFCTLDNSSLSERCLACGEWRYSNG 287 (299)
Q Consensus 256 ~~~~W~C~~Ct~~N~~~~~~C~~Cg~~r~~~~ 287 (299)
..+.|.|+.|||+|+.....|+||+++|+.+.
T Consensus 8 ~~~~W~C~~CT~~N~~~~~~C~~C~~pr~~s~ 39 (53)
T 2d9g_A 8 DEGYWDCSVCTFRNSAEAFKCMMCDVRKGTST 39 (53)
T ss_dssp CCCCEECSSSCCEECSSCSSCSSSCCCCCCCC
T ss_pred CCCCcCCCCCccCCCCCCCccCCCCCcCCccc
Confidence 35689999999999999999999999998643
No 12
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=98.18 E-value=6.7e-07 Score=57.80 Aligned_cols=28 Identities=32% Similarity=0.572 Sum_probs=25.9
Q ss_pred CCCcccCCcccccCCCCccccccCCCCC
Q 022290 257 LKGWSCKFCTLDNSSLSERCLACGEWRY 284 (299)
Q Consensus 257 ~~~W~C~~Ct~~N~~~~~~C~~Cg~~r~ 284 (299)
...|.|+.|||.|+.....|+||+.+|+
T Consensus 6 ~~~W~C~~CT~~N~~~~~~Ce~C~~~r~ 33 (34)
T 3a9j_C 6 GAQWNCTACTFLNHPALIRCEQCEMPRH 33 (34)
T ss_dssp CCCEECTTTCCEECTTCSBCTTTCCBSC
T ss_pred CCcCCCCCCccccCCCCCeeCCCCCcCc
Confidence 3589999999999999999999999985
No 13
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=98.15 E-value=8.4e-07 Score=56.21 Aligned_cols=27 Identities=30% Similarity=0.658 Sum_probs=25.3
Q ss_pred CCCcccCCcccccCCCCccccccCCCC
Q 022290 257 LKGWSCKFCTLDNSSLSERCLACGEWR 283 (299)
Q Consensus 257 ~~~W~C~~Ct~~N~~~~~~C~~Cg~~r 283 (299)
...|.|+.|||.|++....|+||+.+|
T Consensus 4 ~~~W~C~~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 4 SAMWACQHCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp SCCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred CccccCCcccccCCCCCCccCCcCCCC
Confidence 357999999999999999999999987
No 14
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=2e-06 Score=59.83 Aligned_cols=34 Identities=32% Similarity=0.761 Sum_probs=26.5
Q ss_pred CCCCCCccCCccccccccCCccccccCCCCCCCC
Q 022290 221 VDVGQMWQCNMCTLLNQPLALTCEACGTQRNKSV 254 (299)
Q Consensus 221 ~~~~~~W~C~~CT~~N~~~a~~C~aCgt~rp~~~ 254 (299)
....+.|.|..|++.|...+.+|.+|++++|...
T Consensus 6 ~~~~g~W~C~~C~v~N~a~~~kC~aCetpKpgs~ 39 (47)
T 2ebq_A 6 SGVIGTWDCDTCLVQNKPEAIKCVACETPKPGTC 39 (47)
T ss_dssp CCCSSSEECSSSCCEECSSCSBCSSSCCBCSCSS
T ss_pred CCCCCceECCeeeccCccCCceecCcCCCCCCCc
Confidence 3445678888888888888888888888887654
No 15
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=98.08 E-value=1.2e-06 Score=57.06 Aligned_cols=30 Identities=27% Similarity=0.753 Sum_probs=25.5
Q ss_pred CCCCcccCCcccccCCCCccccccCCCCCC
Q 022290 256 NLKGWSCKFCTLDNSSLSERCLACGEWRYS 285 (299)
Q Consensus 256 ~~~~W~C~~Ct~~N~~~~~~C~~Cg~~r~~ 285 (299)
+.+.|.|..|++.|.....+|.+|+++|+.
T Consensus 4 ~~G~W~C~~C~v~N~~~~~kC~aCet~Kpg 33 (34)
T 3gj5_B 4 GSGSWDCEVCLVQNKADSTKCIACESAKPG 33 (34)
T ss_dssp --CCEECTTTCCEECSSCSBCTTTCCBC--
T ss_pred CCCceECCeeEeECccccCEEcccCCcCCC
Confidence 467899999999999999999999999975
No 16
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=98.01 E-value=5.1e-06 Score=58.93 Aligned_cols=31 Identities=29% Similarity=0.517 Sum_probs=28.1
Q ss_pred CCCcccCCcccccCCCCccccccCCCCCCCC
Q 022290 257 LKGWSCKFCTLDNSSLSERCLACGEWRYSNG 287 (299)
Q Consensus 257 ~~~W~C~~Ct~~N~~~~~~C~~Cg~~r~~~~ 287 (299)
...|.|+.|||.|......|+||+.+|+...
T Consensus 8 ~~~W~Cp~CTf~N~p~~~~CemC~~prp~~~ 38 (52)
T 2crc_A 8 PVGWQCPGCTFINKPTRPGCEMCCRARPEAY 38 (52)
T ss_dssp SSSBCCTTTCCCBCTTCSSCSSSCCCCCTTS
T ss_pred CCCccCCCcccccCCCCCeeCCCCCcCCccc
Confidence 3489999999999999999999999998754
No 17
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=5.5e-06 Score=57.61 Aligned_cols=29 Identities=24% Similarity=0.748 Sum_probs=17.9
Q ss_pred CCccCCccccccccCCccccccCCCCCCC
Q 022290 225 QMWQCNMCTLLNQPLALTCEACGTQRNKS 253 (299)
Q Consensus 225 ~~W~C~~CT~~N~~~a~~C~aCgt~rp~~ 253 (299)
+.|.|+.|++.|...+.+|.+|++++|..
T Consensus 10 gsW~C~~C~v~N~a~~~kC~aC~~pkpg~ 38 (47)
T 2ebr_A 10 GSWDCELCLVQNKADSTKCLACESAKPGT 38 (47)
T ss_dssp SSCCCSSSCCCCCSSCSBCSSSCCBCCCC
T ss_pred CeeECCeeecCCcCCcceecCcCCCCCCC
Confidence 45666666666666666666666666544
No 18
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=1.9e-05 Score=56.99 Aligned_cols=31 Identities=19% Similarity=0.571 Sum_probs=27.7
Q ss_pred CCCCCccCCccccccccCCccccccCCCCCC
Q 022290 222 DVGQMWQCNMCTLLNQPLALTCEACGTQRNK 252 (299)
Q Consensus 222 ~~~~~W~C~~CT~~N~~~a~~C~aCgt~rp~ 252 (299)
...+.|.|+.|.+.|.....+|.+|++++|.
T Consensus 27 ~~~GsWeC~~C~V~N~a~~~kC~ACetpKPG 57 (57)
T 2ebv_A 27 RPIGSWECSVCCVSNNAEDNKCVSCMSEKPG 57 (57)
T ss_dssp CCSSSCCCSSSCCCCCSSCSBCSSSCCBCCC
T ss_pred CCCCeeeCCeeEccCccCCceeeEcCCcCCC
Confidence 4457899999999999999999999999873
No 19
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=97.90 E-value=5.2e-06 Score=61.26 Aligned_cols=29 Identities=38% Similarity=0.866 Sum_probs=21.1
Q ss_pred CCccCCccccccccCCccccccCCCCCCC
Q 022290 225 QMWQCNMCTLLNQPLALTCEACGTQRNKS 253 (299)
Q Consensus 225 ~~W~C~~CT~~N~~~a~~C~aCgt~rp~~ 253 (299)
..|.|+.|||+|++....|++|+++++..
T Consensus 7 ~~W~CP~CTf~N~p~~p~CEmC~~prp~~ 35 (64)
T 3b08_B 7 VGWQCPGCTFINKPTRPGCEMCCRARPET 35 (64)
T ss_dssp CSEECTTTCCEECTTCSBCTTTCCBCCSS
T ss_pred CCCcCCCccccCCCCCCccCcCCCCCCcc
Confidence 35777777777777777777777777654
No 20
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=9.5e-06 Score=56.40 Aligned_cols=34 Identities=26% Similarity=0.658 Sum_probs=30.6
Q ss_pred CCCCcccCCcccccCCCCccccccCCCCCCCCCC
Q 022290 256 NLKGWSCKFCTLDNSSLSERCLACGEWRYSNGPP 289 (299)
Q Consensus 256 ~~~~W~C~~Ct~~N~~~~~~C~~Cg~~r~~~~pp 289 (299)
+.+.|.|..|++.|.....+|.+|+++|+.+.|.
T Consensus 8 ~~gsW~C~~C~v~N~a~~~kC~aC~~pkpg~~p~ 41 (47)
T 2ebr_A 8 PEGSWDCELCLVQNKADSTKCLACESAKPGTKSG 41 (47)
T ss_dssp CCSSCCCSSSCCCCCSSCSBCSSSCCBCCCCCSS
T ss_pred CCCeeECCeeecCCcCCcceecCcCCCCCCCccc
Confidence 4678999999999999999999999999887643
No 21
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=97.85 E-value=1.1e-05 Score=59.53 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=28.0
Q ss_pred CCCcccCCcccccCCCCccccccCCCCCCCC
Q 022290 257 LKGWSCKFCTLDNSSLSERCLACGEWRYSNG 287 (299)
Q Consensus 257 ~~~W~C~~Ct~~N~~~~~~C~~Cg~~r~~~~ 287 (299)
...|.|+.|||+|+.....|+||+.+|++..
T Consensus 6 ~~~W~CP~CTf~N~p~~p~CEmC~~prp~~~ 36 (64)
T 3b08_B 6 PVGWQCPGCTFINKPTRPGCEMCCRARPETY 36 (64)
T ss_dssp CCSEECTTTCCEECTTCSBCTTTCCBCCSSC
T ss_pred CCCCcCCCccccCCCCCCccCcCCCCCCccc
Confidence 3479999999999999999999999998754
No 22
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=8.2e-06 Score=56.73 Aligned_cols=35 Identities=23% Similarity=0.595 Sum_probs=31.4
Q ss_pred CCCCCcccCCcccccCCCCccccccCCCCCCCCCC
Q 022290 255 GNLKGWSCKFCTLDNSSLSERCLACGEWRYSNGPP 289 (299)
Q Consensus 255 ~~~~~W~C~~Ct~~N~~~~~~C~~Cg~~r~~~~pp 289 (299)
.+.+.|.|..|++.|.....+|.+|+++|+.+.+.
T Consensus 7 ~~~g~W~C~~C~v~N~a~~~kC~aCetpKpgs~~~ 41 (47)
T 2ebq_A 7 GVIGTWDCDTCLVQNKPEAIKCVACETPKPGTCVK 41 (47)
T ss_dssp CCSSSEECSSSCCEECSSCSBCSSSCCBCSCSSCG
T ss_pred CCCCceECCeeeccCccCCceecCcCCCCCCCccC
Confidence 35678999999999999999999999999987753
No 23
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=97.52 E-value=3.2e-05 Score=61.52 Aligned_cols=30 Identities=33% Similarity=0.808 Sum_probs=26.2
Q ss_pred CCCCccCCccccccccCCccccccCCCCCC
Q 022290 223 VGQMWQCNMCTLLNQPLALTCEACGTQRNK 252 (299)
Q Consensus 223 ~~~~W~C~~CT~~N~~~a~~C~aCgt~rp~ 252 (299)
..+.|.|+.|++.|...+.+|.+|+++||.
T Consensus 69 ~~g~W~C~~C~~~N~~~~~~C~aC~tpkPg 98 (98)
T 3gj7_B 69 AIGTWDCDTCLVQNKPEAVKCVACETPKPG 98 (98)
T ss_dssp --CCEECTTTCCEECTTCSBCTTTCCBCC-
T ss_pred CCCcccCCcCcCCChhhcceecccCCCCCC
Confidence 457899999999999999999999999973
No 24
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=97.44 E-value=9.6e-05 Score=47.50 Aligned_cols=29 Identities=28% Similarity=0.710 Sum_probs=20.2
Q ss_pred CCCccCCccccccccCCccccccCCCCCC
Q 022290 224 GQMWQCNMCTLLNQPLALTCEACGTQRNK 252 (299)
Q Consensus 224 ~~~W~C~~CT~~N~~~a~~C~aCgt~rp~ 252 (299)
.++|.|+.|..+|+.....|..|+++|+.
T Consensus 4 ~gDW~C~~C~~~Nfa~R~~C~~C~~pk~~ 32 (33)
T 2k1p_A 4 ANDWQCKTCSNVNWARRSECNMCNTPKYA 32 (33)
T ss_dssp SSSCBCSSSCCBCCTTCSBCSSSCCBTTC
T ss_pred CCCcccCCCCCccccccccccccCCcCCC
Confidence 45677777777777777777777777653
No 25
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=97.43 E-value=5.4e-05 Score=48.34 Aligned_cols=29 Identities=34% Similarity=0.694 Sum_probs=21.6
Q ss_pred CCCccCCccccccccCCccccccCCCCCC
Q 022290 224 GQMWQCNMCTLLNQPLALTCEACGTQRNK 252 (299)
Q Consensus 224 ~~~W~C~~CT~~N~~~a~~C~aCgt~rp~ 252 (299)
.+.|.|+.|.++|+.....|..|+++|+.
T Consensus 3 ~gDW~C~~C~~~Nfa~r~~C~~C~~pr~~ 31 (32)
T 2lk0_A 3 FEDWLCNKCCLNNFRKRLKCFRCGADKFD 31 (32)
T ss_dssp CSEEECTTTCCEEETTCCBCTTTCCBTTC
T ss_pred CCCCCcCcCcCCcChhcceecCCCCcCCC
Confidence 35677877777777777777777777764
No 26
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.42 E-value=8.8e-05 Score=53.51 Aligned_cols=31 Identities=19% Similarity=0.699 Sum_probs=28.1
Q ss_pred CCCCCcccCCcccccCCCCccccccCCCCCC
Q 022290 255 GNLKGWSCKFCTLDNSSLSERCLACGEWRYS 285 (299)
Q Consensus 255 ~~~~~W~C~~Ct~~N~~~~~~C~~Cg~~r~~ 285 (299)
.+.+.|.|..|.+.|.....+|.+|+++|+.
T Consensus 27 ~~~GsWeC~~C~V~N~a~~~kC~ACetpKPG 57 (57)
T 2ebv_A 27 RPIGSWECSVCCVSNNAEDNKCVSCMSEKPG 57 (57)
T ss_dssp CCSSSCCCSSSCCCCCSSCSBCSSSCCBCCC
T ss_pred CCCCeeeCCeeEccCccCCceeeEcCCcCCC
Confidence 3567899999999999999999999999973
No 27
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=97.28 E-value=9.3e-05 Score=57.93 Aligned_cols=30 Identities=23% Similarity=0.666 Sum_probs=26.4
Q ss_pred CCCCccCCccccccccCCccccccCCCCCC
Q 022290 223 VGQMWQCNMCTLLNQPLALTCEACGTQRNK 252 (299)
Q Consensus 223 ~~~~W~C~~CT~~N~~~a~~C~aCgt~rp~ 252 (299)
..+.|.|+.|+++|...+..|.+|+++||.
T Consensus 62 ~~g~W~C~~C~~~N~a~~~~C~~C~~pkp~ 91 (92)
T 3gj8_B 62 PEGSWDCEVCLVQNKADSTKCIACESAKPG 91 (92)
T ss_dssp --CCEECTTTCCEECSSCSBCTTTCCBCC-
T ss_pred CCCcccCCcCCcCChhhcccccccCCCCCC
Confidence 458999999999999999999999999985
No 28
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=97.26 E-value=0.00021 Score=45.92 Aligned_cols=30 Identities=27% Similarity=0.673 Sum_probs=27.8
Q ss_pred CCCCcccCCcccccCCCCccccccCCCCCC
Q 022290 256 NLKGWSCKFCTLDNSSLSERCLACGEWRYS 285 (299)
Q Consensus 256 ~~~~W~C~~Ct~~N~~~~~~C~~Cg~~r~~ 285 (299)
+.++|.|+.|.++|+.....|-.|++||+.
T Consensus 3 ~~gDW~C~~C~~~Nfa~R~~C~~C~~pk~~ 32 (33)
T 2k1p_A 3 SANDWQCKTCSNVNWARRSECNMCNTPKYA 32 (33)
T ss_dssp SSSSCBCSSSCCBCCTTCSBCSSSCCBTTC
T ss_pred CCCCcccCCCCCccccccccccccCCcCCC
Confidence 467999999999999999999999999964
No 29
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=97.12 E-value=0.00015 Score=46.23 Aligned_cols=30 Identities=27% Similarity=0.832 Sum_probs=27.5
Q ss_pred CCCCcccCCcccccCCCCccccccCCCCCC
Q 022290 256 NLKGWSCKFCTLDNSSLSERCLACGEWRYS 285 (299)
Q Consensus 256 ~~~~W~C~~Ct~~N~~~~~~C~~Cg~~r~~ 285 (299)
+.++|.|..|.++|+.....|-.|+++|+.
T Consensus 2 k~gDW~C~~C~~~Nfa~r~~C~~C~~pr~~ 31 (32)
T 2lk0_A 2 KFEDWLCNKCCLNNFRKRLKCFRCGADKFD 31 (32)
T ss_dssp CCSEEECTTTCCEEETTCCBCTTTCCBTTC
T ss_pred CCCCCCcCcCcCCcChhcceecCCCCcCCC
Confidence 457899999999999999999999999963
No 30
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=96.94 E-value=0.00086 Score=45.97 Aligned_cols=32 Identities=22% Similarity=0.587 Sum_probs=25.0
Q ss_pred CCCCCCccCC--ccccccccCCccccccCCCCCC
Q 022290 221 VDVGQMWQCN--MCTLLNQPLALTCEACGTQRNK 252 (299)
Q Consensus 221 ~~~~~~W~C~--~CT~~N~~~a~~C~aCgt~rp~ 252 (299)
....++|.|+ .|..+|+.....|..|+++||.
T Consensus 9 ~~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~ 42 (45)
T 1n0z_A 9 RVSDGDWICPDKKCGNVNFARRTSCDRCGREKTT 42 (45)
T ss_dssp SSCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCC
T ss_pred CCCCCCcCCCCCCCCCEEccccccccccCCcCCC
Confidence 3455778888 7888888888888888888765
No 31
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=96.52 E-value=0.002 Score=44.16 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=28.9
Q ss_pred CCCCCcccC--CcccccCCCCccccccCCCCCCC
Q 022290 255 GNLKGWSCK--FCTLDNSSLSERCLACGEWRYSN 286 (299)
Q Consensus 255 ~~~~~W~C~--~Ct~~N~~~~~~C~~Cg~~r~~~ 286 (299)
.+.++|.|. .|.++|+.....|-.|+++|+..
T Consensus 10 ~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~~ 43 (45)
T 1n0z_A 10 VSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG 43 (45)
T ss_dssp SCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred CCCCCcCCCCCCCCCEEccccccccccCCcCCCC
Confidence 467899999 89999999999999999999753
No 32
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=94.02 E-value=0.0094 Score=60.33 Aligned_cols=28 Identities=32% Similarity=0.655 Sum_probs=0.0
Q ss_pred CCccCCccccccccCCccccccCCCCCC
Q 022290 225 QMWQCNMCTLLNQPLALTCEACGTQRNK 252 (299)
Q Consensus 225 ~~W~C~~CT~~N~~~a~~C~aCgt~rp~ 252 (299)
..=.||+|||+|.++-..|++||++-+.
T Consensus 179 ~~~~CP~CTF~NHPsl~~CEiCg~~L~~ 206 (566)
T 1w7p_D 179 SENICPACTFANHPQIGNCEICGHRLPN 206 (566)
T ss_dssp ----------------------------
T ss_pred cCCCCCcccccCChhhhcccccCCcCCC
Confidence 3567999999999999999999988654
No 33
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=93.03 E-value=0.028 Score=42.46 Aligned_cols=29 Identities=28% Similarity=0.731 Sum_probs=20.3
Q ss_pred CCCCccCCccccccccCCcc---------ccccCCCCC
Q 022290 223 VGQMWQCNMCTLLNQPLALT---------CEACGTQRN 251 (299)
Q Consensus 223 ~~~~W~C~~CT~~N~~~a~~---------C~aCgt~rp 251 (299)
....|.|+.|.|.|+..+.. |.+||...+
T Consensus 14 ~~~tWVCpICsfsN~v~s~fdp~~~~lPpC~aCGIkP~ 51 (76)
T 2j9u_B 14 VVSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPAD 51 (76)
T ss_dssp -CEEEECTTTCCEEEESSCCCTTCSSCCBCTTTCCBCC
T ss_pred cccceECccccccCcCccccCCCCCCCCcccccCccCC
Confidence 34579999999999876644 666665433
No 34
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=90.89 E-value=0.085 Score=41.60 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=25.1
Q ss_pred EEEEEecCCCCCCCCCCHHHHHHHHHHHhhhcCCCCC
Q 022290 31 EVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPH 67 (299)
Q Consensus 31 ~I~LrLR~~~~~~~f~p~~~i~~v~lHELaH~~~~~H 67 (299)
.|.|..-+- ..+..+.|..||.|||+|+.+.++
T Consensus 67 ~i~v~~gLl----~~l~~~El~aVlaHElgH~~~~h~ 99 (107)
T 3cqb_A 67 LVAVSTGLL----HNMTRDEAEAVLAHEVSHIANGDM 99 (107)
T ss_dssp EEEEEHHHH----HHSCHHHHHHHHHHHHHHHHTTCE
T ss_pred EEEEcHHHH----hhCCHHHHHHHHHHHHHHHHCCCH
Confidence 466665432 235889999999999999998764
No 35
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=87.35 E-value=0.49 Score=33.15 Aligned_cols=31 Identities=29% Similarity=0.631 Sum_probs=22.6
Q ss_pred CCCCCCccCCccccccccCCccccccCCCCC
Q 022290 221 VDVGQMWQCNMCTLLNQPLALTCEACGTQRN 251 (299)
Q Consensus 221 ~~~~~~W~C~~CT~~N~~~a~~C~aCgt~rp 251 (299)
+-.++.|.|..|--.|++....|..|-.-|.
T Consensus 6 ~~~eD~WkC~~C~k~N~Pl~ryC~rCwaLRk 36 (53)
T 2cr8_A 6 SGSEDEWQCTECKKFNSPSKRYCFRCWALRK 36 (53)
T ss_dssp SCCSCCEECSSSCCEECSSCCBCTTTCCBCC
T ss_pred CCCcceeecccccccCCCccchhHHHHHhhc
Confidence 3345678888888888888788888876653
No 36
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=85.59 E-value=0.47 Score=33.15 Aligned_cols=10 Identities=20% Similarity=0.876 Sum_probs=6.2
Q ss_pred CccCCccccc
Q 022290 226 MWQCNMCTLL 235 (299)
Q Consensus 226 ~W~C~~CT~~ 235 (299)
.|.|..|.++
T Consensus 3 ~y~C~~CGyv 12 (52)
T 1e8j_A 3 IYVCTVCGYE 12 (52)
T ss_dssp CEECSSSCCC
T ss_pred cEEeCCCCeE
Confidence 4666666655
No 37
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=84.31 E-value=0.39 Score=32.83 Aligned_cols=11 Identities=27% Similarity=0.573 Sum_probs=5.9
Q ss_pred CccccccCCCC
Q 022290 273 SERCLACGEWR 283 (299)
Q Consensus 273 ~~~C~~Cg~~r 283 (299)
.|+|..|+.+|
T Consensus 30 dw~CP~Cg~~k 40 (46)
T 6rxn_A 30 DWCCPVCGVSK 40 (46)
T ss_dssp TCBCTTTCCBG
T ss_pred CCcCcCCCCcH
Confidence 34555555554
No 38
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=83.63 E-value=0.36 Score=36.43 Aligned_cols=27 Identities=30% Similarity=0.797 Sum_probs=20.7
Q ss_pred CCcccCCcccccCCCCc---------cccccCCCCC
Q 022290 258 KGWSCKFCTLDNSSLSE---------RCLACGEWRY 284 (299)
Q Consensus 258 ~~W~C~~Ct~~N~~~~~---------~C~~Cg~~r~ 284 (299)
..|.|+.|.|.|..... .|.+||-..+
T Consensus 16 ~tWVCpICsfsN~v~s~fdp~~~~lPpC~aCGIkP~ 51 (76)
T 2j9u_B 16 STWVCPICMVSNETQGEFTKDTLPTPICINCGVPAD 51 (76)
T ss_dssp EEEECTTTCCEEEESSCCCTTCSSCCBCTTTCCBCC
T ss_pred cceECccccccCcCccccCCCCCCCCcccccCccCC
Confidence 47999999999986655 5888886544
No 39
>2ddf_A ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapiens} PDB: 2fv5_A* 3l0v_A* 3kme_A* 3l0t_A* 3kmc_A* 3le9_A* 3lea_A* 3lgp_A* 3o64_A* 3ewj_A* 3edz_A* 3e8r_A* 2fv9_A* 1zxc_A* 2oi0_A* 3b92_A* 2a8h_A* 1bkc_A* 3cki_A 1bkc_I* ...
Probab=82.72 E-value=0.65 Score=41.39 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCChh
Q 022290 46 FPYEQILDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 46 ~p~~~i~~v~lHELaH~~~~~H~~~ 70 (299)
.+......||+|||.|+.-++||..
T Consensus 177 ~~~~~~a~~~AHElGHnlG~~HD~~ 201 (257)
T 2ddf_A 177 ILTKEADLVTTHELGHNFGAEHDPD 201 (257)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCCCT
T ss_pred cccceeeeeeeeehhhhcCcccCCC
Confidence 4555678999999999999999975
No 40
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=80.98 E-value=0.66 Score=32.73 Aligned_cols=9 Identities=33% Similarity=1.372 Sum_probs=4.5
Q ss_pred CCcccCCcc
Q 022290 258 KGWSCKFCT 266 (299)
Q Consensus 258 ~~W~C~~Ct 266 (299)
..|.|+.|.
T Consensus 35 ~dw~CP~Cg 43 (54)
T 4rxn_A 35 DDWVCPLCG 43 (54)
T ss_dssp TTCBCTTTC
T ss_pred CCCcCcCCC
Confidence 345555554
No 41
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*
Probab=79.74 E-value=0.76 Score=39.96 Aligned_cols=21 Identities=24% Similarity=0.139 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhhcCCCCCChh
Q 022290 50 QILDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 50 ~i~~v~lHELaH~~~~~H~~~ 70 (299)
.+..||+|||.|+.-++||..
T Consensus 140 ~~a~~~AHElGHnlG~~HD~~ 160 (217)
T 3b8z_A 140 HAAFTVAHEIGHLLGLSHDDS 160 (217)
T ss_dssp SHHHHHHHHHHHHTTCCCTTS
T ss_pred chhhhhHhhhhhhcCCcCCCC
Confidence 356899999999999999975
No 42
>2i47_A ADAM 17; TACE-inhibitor complex, hydrolase; HET: INN KGY; 1.90A {Homo sapiens} SCOP: d.92.1.10 PDB: 3g42_A*
Probab=79.34 E-value=0.98 Score=41.01 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCChh
Q 022290 46 FPYEQILDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 46 ~p~~~i~~v~lHELaH~~~~~H~~~ 70 (299)
.+......||+|||.|+.-++||..
T Consensus 183 ~~~~~~a~~~AHElGHnlGm~HD~~ 207 (288)
T 2i47_A 183 ILTKEADLVTTHELGHNFGAEHDPD 207 (288)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred cchhhHHHHHHHHHHhhcCCccCCC
Confidence 4555678999999999999999975
No 43
>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin; 1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB: 1bsw_A
Probab=78.96 E-value=0.89 Score=38.96 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhhcCCCCCChh
Q 022290 50 QILDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 50 ~i~~v~lHELaH~~~~~H~~~ 70 (299)
.+..||+|||.|+.-++||..
T Consensus 132 ~~a~~~AHElGH~lG~~HD~~ 152 (197)
T 1bud_A 132 LVAITLAHEMAHNLGVSHDEG 152 (197)
T ss_dssp HHHHHHHHHHHHHTTCCCCCT
T ss_pred HHHHHHHHHHhhhcCCccCCC
Confidence 467899999999999999986
No 44
>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin, snake venom proteinase; 2.20A {Deinagkistrodon acutus} SCOP: d.92.1.9
Probab=78.68 E-value=0.89 Score=38.98 Aligned_cols=20 Identities=40% Similarity=0.378 Sum_probs=18.7
Q ss_pred HHHHHHHHhhhcCCCCCChh
Q 022290 51 ILDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 51 i~~v~lHELaH~~~~~H~~~ 70 (299)
+..||+|||.|+.-++||..
T Consensus 135 ~a~~~AHElGH~lG~~HD~~ 154 (197)
T 1qua_A 135 MAVTMAHELGHNLGMNHDGA 154 (197)
T ss_dssp HHHHHHHHHHHHTTCCCCCG
T ss_pred HHHHHHHHHHHhcCCCCCCC
Confidence 67899999999999999987
No 45
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9 PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A
Probab=78.23 E-value=0.96 Score=38.96 Aligned_cols=21 Identities=38% Similarity=0.303 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhcCCCCCChh
Q 022290 50 QILDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 50 ~i~~v~lHELaH~~~~~H~~~ 70 (299)
.+..||+|||.|+.-++||..
T Consensus 135 ~~a~~~AHElGHnlG~~HD~~ 155 (202)
T 1atl_A 135 LMGVTMAHELGHNLGMEHDGK 155 (202)
T ss_dssp HHHHHHHHHHHHHTTCCCCCT
T ss_pred eeEEEehhhhccccCceeCCC
Confidence 367899999999999999986
No 46
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of BAS residues, extracellular matrix, glycoprotein, hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo sapiens}
Probab=78.17 E-value=0.86 Score=43.04 Aligned_cols=20 Identities=25% Similarity=0.125 Sum_probs=18.3
Q ss_pred HHHHHHHHhhhcCCCCCChh
Q 022290 51 ILDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 51 i~~v~lHELaH~~~~~H~~~ 70 (299)
+..||+|||.|++-++||..
T Consensus 143 ~a~~~AHElGHnlGm~HD~~ 162 (378)
T 2rjq_A 143 AAFTVAHEIGHLLGLSHDDS 162 (378)
T ss_dssp HHHHHHHHHHHHTTCCCTTS
T ss_pred hhhhhhhhhhhhcCccCCCC
Confidence 67899999999999999974
No 47
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=78.17 E-value=1.1 Score=30.62 Aligned_cols=27 Identities=33% Similarity=0.938 Sum_probs=21.7
Q ss_pred CCccCCccccccccCCccccccCCCCC
Q 022290 225 QMWQCNMCTLLNQPLALTCEACGTQRN 251 (299)
Q Consensus 225 ~~W~C~~CT~~N~~~a~~C~aCgt~rp 251 (299)
+.|.|..|--.|++....|..|-+-|.
T Consensus 12 D~WkC~~C~~~N~Pl~r~C~rCw~LRk 38 (46)
T 2c6a_A 12 DYWKCTSCNEMNPPLPSHCNRCWALRE 38 (46)
T ss_dssp GCEECTTTCCEECSSCSSCTTTCCCCS
T ss_pred ceEecccccccCCCccchhhHHHhhcc
Confidence 678888888888888888888876653
No 48
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex, metal-binding, zinc-depending, metalloprotease, metalloproteinase/inhibitor complex; HET: WR2; 1.05A {Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A 3gbo_A
Probab=78.01 E-value=0.99 Score=38.83 Aligned_cols=21 Identities=38% Similarity=0.316 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhhcCCCCCChh
Q 022290 50 QILDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 50 ~i~~v~lHELaH~~~~~H~~~ 70 (299)
.+..||+|||.|+.-++||..
T Consensus 135 ~~a~~~AHElGH~lG~~HD~~ 155 (202)
T 2w15_A 135 WVAVTMAHELGHNLGIHHDTG 155 (202)
T ss_dssp HHHHHHHHHHHHHTTCCCCCT
T ss_pred HHHHHHHHHHhhhcCCccCCC
Confidence 467899999999999999976
No 49
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease, heparin-binding, metalloproteinase, metzincin, glycoprotein metal-binding; 2.00A {Homo sapiens} PDB: 2jih_A 3q2g_A* 3q2h_A*
Probab=77.98 E-value=0.89 Score=41.53 Aligned_cols=20 Identities=35% Similarity=0.268 Sum_probs=18.2
Q ss_pred HHHHHHHHhhhcCCCCCChh
Q 022290 51 ILDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 51 i~~v~lHELaH~~~~~H~~~ 70 (299)
+..||+|||.|+.-++||..
T Consensus 143 ~a~t~AHElGHnlG~~HD~~ 162 (300)
T 2v4b_A 143 AAFTTAHELGHVFNMPHDDA 162 (300)
T ss_dssp HHHHHHHHHHHHTTCCCTTS
T ss_pred ceehhhhhhhhhcCCcCCCC
Confidence 67899999999999999964
No 50
>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase; 1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB: 1kui_A 1kuk_A 1kug_A 1wni_A
Probab=77.61 E-value=1 Score=38.86 Aligned_cols=21 Identities=38% Similarity=0.358 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhhcCCCCCChh
Q 022290 50 QILDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 50 ~i~~v~lHELaH~~~~~H~~~ 70 (299)
.+..||+|||.|+.-++||..
T Consensus 137 ~~a~~~AHElGH~lG~~HD~~ 157 (203)
T 1kuf_A 137 MVAVTMTHELGHNLGMEHDDK 157 (203)
T ss_dssp HHHHHHHHHHHHHTTCCCCCT
T ss_pred hhHHHHHHHhhhhcCCCCCCC
Confidence 477899999999999999987
No 51
>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}
Probab=77.61 E-value=1 Score=38.77 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhhcCCCCCChhH
Q 022290 50 QILDTMLHELCHNEYGPHNADF 71 (299)
Q Consensus 50 ~i~~v~lHELaH~~~~~H~~~F 71 (299)
.+..||+|||.|+.-++||...
T Consensus 134 ~~a~~~AHElGH~lG~~HD~~~ 155 (202)
T 1yp1_A 134 LMAVVMAHELGHNLGMLHDDGY 155 (202)
T ss_dssp HHHHHHHHHHHHHTTCCCCCTT
T ss_pred HHHHHHHHHHHHhcCCCCCCCC
Confidence 3678999999999999999873
No 52
>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat, inflammation, alpha/beta motif, metalloproteinas allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo sapiens}
Probab=76.99 E-value=1.3 Score=38.31 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhhcCCCCCChh
Q 022290 48 YEQILDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 48 ~~~i~~v~lHELaH~~~~~H~~~ 70 (299)
+..+-.||+|||.|+.-++||..
T Consensus 130 ~~~~a~~~AHElGH~lG~~HD~~ 152 (208)
T 4dd8_A 130 PVGVACTMAHEMGHNLGMDHDEN 152 (208)
T ss_dssp HHHHHHHHHHHHHHHTTCCCGGG
T ss_pred hhHHHHHHHHHHHHHcCCcCCCC
Confidence 44566899999999999999964
No 53
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of basic residues, extracellular matrix, glycoprotein, hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens} PDB: 3b2z_A
Probab=76.91 E-value=0.99 Score=41.59 Aligned_cols=21 Identities=29% Similarity=0.107 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhcCCCCCChh
Q 022290 50 QILDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 50 ~i~~v~lHELaH~~~~~H~~~ 70 (299)
.+..||+|||.|++-++||..
T Consensus 142 ~~a~t~AHElGHnlGm~HD~~ 162 (316)
T 2rjp_A 142 QSAFTAAHQLGHVFNMLHDNS 162 (316)
T ss_dssp THHHHHHHHHHHHTTCCCTTS
T ss_pred hHHHHHHHHHHhhcCccCCCC
Confidence 467899999999999999975
No 54
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=76.38 E-value=0.98 Score=31.50 Aligned_cols=10 Identities=20% Similarity=0.869 Sum_probs=5.7
Q ss_pred CccCCccccc
Q 022290 226 MWQCNMCTLL 235 (299)
Q Consensus 226 ~W~C~~CT~~ 235 (299)
.|.|..|.++
T Consensus 2 ~~~C~~CGyv 11 (52)
T 1yk4_A 2 KLSCKICGYI 11 (52)
T ss_dssp EEEESSSSCE
T ss_pred cEEeCCCCeE
Confidence 3556666555
No 55
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=75.67 E-value=0.9 Score=39.82 Aligned_cols=13 Identities=15% Similarity=0.761 Sum_probs=10.0
Q ss_pred CCccCCccccccc
Q 022290 225 QMWQCNMCTLLNQ 237 (299)
Q Consensus 225 ~~W~C~~CT~~N~ 237 (299)
..|.|..|.++=.
T Consensus 170 ~~~~C~~CG~i~~ 182 (202)
T 1yuz_A 170 KFHLCPICGYIHK 182 (202)
T ss_dssp CEEECSSSCCEEE
T ss_pred cEEEECCCCCEEc
Confidence 4699999988843
No 56
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=75.57 E-value=1.1 Score=33.24 Aligned_cols=11 Identities=18% Similarity=0.857 Sum_probs=6.7
Q ss_pred CCccCCccccc
Q 022290 225 QMWQCNMCTLL 235 (299)
Q Consensus 225 ~~W~C~~CT~~ 235 (299)
..|.|..|.++
T Consensus 6 ~~y~C~vCGyi 16 (70)
T 1dx8_A 6 GKYECEACGYI 16 (70)
T ss_dssp SCEEETTTCCE
T ss_pred ceEEeCCCCEE
Confidence 35666666665
No 57
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=74.04 E-value=1.1 Score=38.32 Aligned_cols=26 Identities=23% Similarity=0.621 Sum_probs=15.0
Q ss_pred CCCccCCccccccccCC-ccccccCCC
Q 022290 224 GQMWQCNMCTLLNQPLA-LTCEACGTQ 249 (299)
Q Consensus 224 ~~~W~C~~CT~~N~~~a-~~C~aCgt~ 249 (299)
...|.|+.|.++=.... ..|.+|+.+
T Consensus 136 ~~~~~C~~CG~i~~~~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 136 KKVYICPICGYTAVDEAPEYCPVCGAP 162 (170)
T ss_dssp SCEEECTTTCCEEESCCCSBCTTTCCB
T ss_pred CCeeEeCCCCCeeCCCCCCCCCCCCCC
Confidence 46788888887643211 245555543
No 58
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=73.94 E-value=3.1 Score=29.13 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=28.8
Q ss_pred CCCCcccCCcccccCCCCccccccCCCCCCCCC
Q 022290 256 NLKGWSCKFCTLDNSSLSERCLACGEWRYSNGP 288 (299)
Q Consensus 256 ~~~~W~C~~Ct~~N~~~~~~C~~Cg~~r~~~~p 288 (299)
....|.|..|.-+|.+-...|.-|-+.|..=-|
T Consensus 8 ~eD~WkC~~C~k~N~Pl~ryC~rCwaLRk~Wlp 40 (53)
T 2cr8_A 8 SEDEWQCTECKKFNSPSKRYCFRCWALRKDWYS 40 (53)
T ss_dssp CSCCEECSSSCCEECSSCCBCTTTCCBCCCCCC
T ss_pred CcceeecccccccCCCccchhHHHHHhhcccCC
Confidence 456899999999999999999999998876444
No 59
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=73.75 E-value=0.95 Score=34.54 Aligned_cols=42 Identities=17% Similarity=0.328 Sum_probs=22.1
Q ss_pred CCCccCCccccccccCC--ccccccCCCCCCCCCCCCCcccCCccc
Q 022290 224 GQMWQCNMCTLLNQPLA--LTCEACGTQRNKSVGNLKGWSCKFCTL 267 (299)
Q Consensus 224 ~~~W~C~~CT~~N~~~a--~~C~aCgt~rp~~~~~~~~W~C~~Ct~ 267 (299)
-..|.|..|.|+=.... ....+.....-. .-+..|.|+.|..
T Consensus 25 m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fe--dlPddW~CPvCga 68 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDEALGWPEDGIAAGTRWD--DIPDDWSCPDCGA 68 (81)
T ss_dssp CCEEEETTTCCEEETTTCBTTTTBCTTCCTT--TSCTTCCCTTTCC
T ss_pred cceEEeCCCCEEEcCCcCCcccCcCCCCChh--HCCCCCcCCCCCC
Confidence 35799999998844321 222222111100 2345788887764
No 60
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin, metalloproteinase, C-type lectin, hydrolase, BL clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia russellii siamensis}
Probab=73.69 E-value=1.7 Score=42.07 Aligned_cols=23 Identities=30% Similarity=0.170 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhhcCCCCCChhH
Q 022290 49 EQILDTMLHELCHNEYGPHNADF 71 (299)
Q Consensus 49 ~~i~~v~lHELaH~~~~~H~~~F 71 (299)
..+..||+|||.|++-++||...
T Consensus 137 ~~~a~t~AHElGHnlGm~HD~~~ 159 (427)
T 2e3x_A 137 FKTAVIMAHELSHNLGMYHDGKN 159 (427)
T ss_dssp HHHHHHHHHHHHHTTTCCCCCTT
T ss_pred ceeeeehHHHHHHhhCCccCCCC
Confidence 45678999999999999999863
No 61
>1r55_A ADAM 33; metalloprotease, inhibitor, asthma, hydrolase; HET: NAG MAN 097; 1.58A {Homo sapiens} SCOP: d.92.1.9 PDB: 1r54_A*
Probab=73.58 E-value=1.4 Score=38.28 Aligned_cols=21 Identities=33% Similarity=0.351 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhcCCCCCChh
Q 022290 50 QILDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 50 ~i~~v~lHELaH~~~~~H~~~ 70 (299)
.+..||+|||.|+.-++||..
T Consensus 135 ~~a~~~AHElGHnlG~~HD~~ 155 (214)
T 1r55_A 135 GAAATMAHEIGHSLGLSHDPD 155 (214)
T ss_dssp HHHHHHHHHHHHHTTCCCCCT
T ss_pred HHHHHHHHHHHHhcCCcCCCC
Confidence 457999999999999999985
No 62
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease, disintegrin, calcium-binding, ADAM, SVMP, M protein, toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A* 2erq_A*
Probab=72.92 E-value=1.6 Score=42.14 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhhcCCCCCChhH
Q 022290 48 YEQILDTMLHELCHNEYGPHNADF 71 (299)
Q Consensus 48 ~~~i~~v~lHELaH~~~~~H~~~F 71 (299)
...+..||+|||.|++-++||...
T Consensus 143 ~~~~a~t~AHElGHnlG~~HD~~~ 166 (427)
T 2ero_A 143 HHLVAIAMAHEMGHNLGMDHDKDT 166 (427)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCTT
T ss_pred hhHHHHHHHHHHHHhcCCccCCCC
Confidence 346778999999999999999863
No 63
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=72.32 E-value=1.1 Score=31.59 Aligned_cols=10 Identities=40% Similarity=1.384 Sum_probs=5.9
Q ss_pred CccCCccccc
Q 022290 226 MWQCNMCTLL 235 (299)
Q Consensus 226 ~W~C~~CT~~ 235 (299)
.|.|..|.++
T Consensus 3 ~y~C~~CGyv 12 (55)
T 2v3b_B 3 KWQCVVCGFI 12 (55)
T ss_dssp EEEETTTCCE
T ss_pred cEEeCCCCeE
Confidence 4666666655
No 64
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase, apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Probab=72.24 E-value=1.7 Score=41.88 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhhhcCCCCCChh
Q 022290 48 YEQILDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 48 ~~~i~~v~lHELaH~~~~~H~~~ 70 (299)
...+..||+|||.|++-++||..
T Consensus 134 ~~~~a~t~AHElGHnlG~~HD~~ 156 (419)
T 2dw0_A 134 NLVVAVIMAHEMGHNLGINHDSG 156 (419)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCT
T ss_pred chhhhhhHHHHHHHHcCCccCCC
Confidence 35667999999999999999986
No 65
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=71.68 E-value=3.1 Score=28.42 Aligned_cols=33 Identities=27% Similarity=0.517 Sum_probs=28.9
Q ss_pred CCCcccCCcccccCCCCccccccCCCCCCCCCC
Q 022290 257 LKGWSCKFCTLDNSSLSERCLACGEWRYSNGPP 289 (299)
Q Consensus 257 ~~~W~C~~Ct~~N~~~~~~C~~Cg~~r~~~~pp 289 (299)
...|.|..|.-+|.+....|.-|-+.|..=-|+
T Consensus 11 ~D~WkC~~C~~~N~Pl~r~C~rCw~LRk~Wlp~ 43 (46)
T 2c6a_A 11 ADYWKCTSCNEMNPPLPSHCNRCWALRENWLPE 43 (46)
T ss_dssp GGCEECTTTCCEECSSCSSCTTTCCCCSSCSCC
T ss_pred cceEecccccccCCCccchhhHHHhhccccCCc
Confidence 368999999999999999999999998765554
No 66
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}
Probab=71.61 E-value=1.4 Score=39.50 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=29.6
Q ss_pred CcEEEEEecCCCCCCCCC-CHHHHHHHHHHHhhhcCCCCCChhHH
Q 022290 29 GAEVKLRLRRPNREWDFF-PYEQILDTMLHELCHNEYGPHNADFY 72 (299)
Q Consensus 29 G~~I~LrLR~~~~~~~f~-p~~~i~~v~lHELaH~~~~~H~~~F~ 72 (299)
|..|.|.--+- ..+ ..+.|..||.|||+|+.+.++-..+.
T Consensus 81 gg~I~v~~gLl----~~l~~~~ELaaVLaHElgH~~~~H~~~~~~ 121 (253)
T 3c37_A 81 GGRVYVHTGLL----KAADNETELAGVLAHEINHAVARHGTRQMT 121 (253)
T ss_dssp TTEEEEEHHHH----HHCSSHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred CCeEEeeHHHH----hhCCCHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 45788876653 234 78999999999999999886654433
No 67
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=69.10 E-value=4.1 Score=30.41 Aligned_cols=45 Identities=20% Similarity=0.454 Sum_probs=22.7
Q ss_pred CCCCCccCCcccc------ccccCCccccccCCCC------C-CCCCCCCC-cccCCcc
Q 022290 222 DVGQMWQCNMCTL------LNQPLALTCEACGTQR------N-KSVGNLKG-WSCKFCT 266 (299)
Q Consensus 222 ~~~~~W~C~~CT~------~N~~~a~~C~aCgt~r------p-~~~~~~~~-W~C~~Ct 266 (299)
..+..|.|..|.- .+....+.|+.|...- | ......+. |.|+.|.
T Consensus 17 ~~~~~W~C~~C~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~ 75 (77)
T 3shb_A 17 KDDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 75 (77)
T ss_dssp TTCTTSCCTTTSBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC
T ss_pred CCCCCCCCCCCcCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCcc
Confidence 3447899998831 1222334455554321 1 01123345 9888885
No 68
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja atra}
Probab=68.73 E-value=2.1 Score=41.49 Aligned_cols=22 Identities=32% Similarity=0.302 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhhcCCCCCChh
Q 022290 49 EQILDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 49 ~~i~~v~lHELaH~~~~~H~~~ 70 (299)
..+..||+|||.|++-++||..
T Consensus 142 ~~~a~t~AHElGHnlGm~HD~~ 163 (422)
T 3k7l_A 142 RMVAITMAHEMGHNLGMNHDRG 163 (422)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCS
T ss_pred hhhhHHHHHHHHHHcCCccCCC
Confidence 4577899999999999999865
No 69
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
Probab=68.68 E-value=2.1 Score=41.10 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhhcCCCCCChh
Q 022290 49 EQILDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 49 ~~i~~v~lHELaH~~~~~H~~~ 70 (299)
..+..||+|||.|++-++||..
T Consensus 137 ~~~a~t~AHElGHnlGm~HD~~ 158 (397)
T 3k7n_A 137 SLVASTITHELGHNLGIHHDKA 158 (397)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCT
T ss_pred chhhhhHHHHHHHHcCCccCCC
Confidence 4577899999999999999976
No 70
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=68.15 E-value=4.2 Score=31.68 Aligned_cols=10 Identities=40% Similarity=1.079 Sum_probs=7.8
Q ss_pred CCCccCCccc
Q 022290 224 GQMWQCNMCT 233 (299)
Q Consensus 224 ~~~W~C~~CT 233 (299)
...|.|+.|.
T Consensus 46 ~~~W~C~~C~ 55 (111)
T 2ysm_A 46 RAGWQCPECK 55 (111)
T ss_dssp STTCCCTTTC
T ss_pred ccCccCCcCC
Confidence 3689999885
No 71
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.61 E-value=14 Score=27.30 Aligned_cols=43 Identities=19% Similarity=0.453 Sum_probs=22.1
Q ss_pred CCCccCCcc-----ccc-cccCCccccccCCCC------C-CCCCCCC-CcccCCcc
Q 022290 224 GQMWQCNMC-----TLL-NQPLALTCEACGTQR------N-KSVGNLK-GWSCKFCT 266 (299)
Q Consensus 224 ~~~W~C~~C-----T~~-N~~~a~~C~aCgt~r------p-~~~~~~~-~W~C~~Ct 266 (299)
...|.|..| ... +....+.|+.|...- | ....+.+ .|.|+.|.
T Consensus 19 ~~~w~C~~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~ 75 (77)
T 2e6s_A 19 DPEKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCK 75 (77)
T ss_dssp CSSSCCSSSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTC
T ss_pred CCCeECCCCCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCcc
Confidence 356777643 322 233445566665421 1 1112344 79998885
No 72
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=64.80 E-value=2.1 Score=42.31 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHhhhcCCCCC
Q 022290 46 FPYEQILDTMLHELCHNEYGPH 67 (299)
Q Consensus 46 ~p~~~i~~v~lHELaH~~~~~H 67 (299)
+..+.|..||.|||.|..|++-
T Consensus 324 l~~~El~aVlaHElgH~~~~~~ 345 (482)
T 4aw6_A 324 CKNEEVLAVLGHELGHWKLGHT 345 (482)
T ss_dssp CCHHHHHHHHHHHHHHHHTTHH
T ss_pred CCHHHHHHHHHHHHHHHHcccH
Confidence 7889999999999999998763
No 73
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=64.78 E-value=1.8 Score=33.39 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=22.6
Q ss_pred CCCCccCCccccccccCC--ccccccCCCCCCCCCCCCCcccCCccc
Q 022290 223 VGQMWQCNMCTLLNQPLA--LTCEACGTQRNKSVGNLKGWSCKFCTL 267 (299)
Q Consensus 223 ~~~~W~C~~CT~~N~~~a--~~C~aCgt~rp~~~~~~~~W~C~~Ct~ 267 (299)
.-..|.|..|.|+=.... ..........-. .-+..|.|+.|..
T Consensus 32 ~m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fe--dlPddW~CPvCga 76 (87)
T 1s24_A 32 AYLKWICITCGHIYDEALGDEAEGFTPGTRFE--DIPDDWCCPDCGA 76 (87)
T ss_dssp CCCEEEETTTTEEEETTSCCTTTTCCSCCCGG--GCCTTCCCSSSCC
T ss_pred CCceEECCCCCeEecCCcCCcccCcCCCCChh--HCCCCCCCCCCCC
Confidence 346799999998843321 122222111000 2355788888864
No 74
>2ejq_A Hypothetical protein TTHA0227; NPPSFA, national project on protein structural and functional analyses; 2.08A {Thermus thermophilus} SCOP: d.92.1.17
Probab=64.33 E-value=2.9 Score=34.40 Aligned_cols=57 Identities=26% Similarity=0.226 Sum_probs=33.6
Q ss_pred EeeeecccCCC----CCCccceecC------------CCcEEEEEecCCCCC--CCCCCHHHHHHHHHHHhhhcC
Q 022290 7 KVRILSEFCPA----NPSLLGINIG------------GGAEVKLRLRRPNRE--WDFFPYEQILDTMLHELCHNE 63 (299)
Q Consensus 7 ~V~~L~E~~P~----~~~llGlN~n------------~G~~I~LrLR~~~~~--~~f~p~~~i~~v~lHELaH~~ 63 (299)
.|..+.|=+|. +..+||+-.. .+..|.|=-|.--+. ...--.+.|..||+||++|..
T Consensus 27 ~V~i~Ved~p~~~~~~~~lLGly~g~~vpl~~r~~~~~P~~I~lYR~pi~~~~~~~eeL~~~V~~tvvHEiaHhf 101 (130)
T 2ejq_A 27 GVHVFPEAKPEPGLEGVWRLGEYLDPGPPSAFGGFEDLGRHIALYYGSFLEVAGEGFDWEAEVWETMLHELRHHL 101 (130)
T ss_dssp EEEEESSCCBCSSSTTCBCCEEEECCCSCBTTBCCGGGCCEEEEEHHHHHHHCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCcccCCcceeeeccCCCcCccccccCCCCCEEEEehHHHHHHhCChhhHHHHHHHHHHHHhHHHH
Confidence 35555555532 2678888765 245676643321100 122335689999999999965
No 75
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=64.23 E-value=6.1 Score=28.71 Aligned_cols=45 Identities=20% Similarity=0.388 Sum_probs=25.9
Q ss_pred CCCCccCCcc-----cc-ccccCCccccccCCCC------C-CCCCCCC-CcccCCccc
Q 022290 223 VGQMWQCNMC-----TL-LNQPLALTCEACGTQR------N-KSVGNLK-GWSCKFCTL 267 (299)
Q Consensus 223 ~~~~W~C~~C-----T~-~N~~~a~~C~aCgt~r------p-~~~~~~~-~W~C~~Ct~ 267 (299)
.+..|.|..| .. .+....+.|+.|...- | ....+.+ .|.|+.|..
T Consensus 10 ~~~~w~C~~C~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 10 DDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp TCTTSCCTTTSBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCCCeECCCCCCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 3457999977 21 1344556677775421 1 1112345 899998863
No 76
>1g12_A Peptidyl-Lys metalloendopeptidase; zinc cordinate,metalloprotease, hydrolase; HET: MAN; 1.60A {Grifola frondosa} SCOP: d.92.1.12 PDB: 1ge5_A* 1ge6_A* 1ge7_A*
Probab=64.18 E-value=2.1 Score=36.16 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=12.1
Q ss_pred HHHHHHHHHhhhcC
Q 022290 50 QILDTMLHELCHNE 63 (299)
Q Consensus 50 ~i~~v~lHELaH~~ 63 (299)
.-..||||||+|+.
T Consensus 110 s~a~tllHE~tH~~ 123 (167)
T 1g12_A 110 SQAGTLVHESSHFT 123 (167)
T ss_dssp CHHHHHHHHHHHSG
T ss_pred CchhhHHHhhhccc
Confidence 45799999999996
No 77
>4axq_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi; 1.40A {Archaeoglobus fulgidus} PDB: 2xhq_A 3zvs_A 4a3w_A*
Probab=64.07 E-value=3.5 Score=35.03 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhhcCCCCCChh
Q 022290 48 YEQILDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 48 ~~~i~~v~lHELaH~~~~~H~~~ 70 (299)
.+.|..+++|||.|+.-.+|-..
T Consensus 111 ~~r~~k~~~HElGH~lGL~HC~~ 133 (163)
T 4axq_A 111 RERVVKEAVHEIGHVLGLKHCSN 133 (163)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSS
T ss_pred HHHHHHHHHHHHHHHcCCCCCCC
Confidence 56788999999999999999543
No 78
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=62.58 E-value=6.2 Score=31.01 Aligned_cols=10 Identities=40% Similarity=1.079 Sum_probs=7.8
Q ss_pred CCCccCCccc
Q 022290 224 GQMWQCNMCT 233 (299)
Q Consensus 224 ~~~W~C~~CT 233 (299)
...|.|+.|.
T Consensus 53 ~~~W~C~~C~ 62 (112)
T 3v43_A 53 ALRWQCIECK 62 (112)
T ss_dssp TSCCCCTTTC
T ss_pred ccccccccCC
Confidence 4579999885
No 79
>1eb6_A Neutral protease II; metalloproteinase, zinc, hydrolase; 1.0A {Aspergillus oryzae} SCOP: d.92.1.12
Probab=61.56 E-value=2.6 Score=35.91 Aligned_cols=15 Identities=33% Similarity=0.357 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhhcCC
Q 022290 50 QILDTMLHELCHNEY 64 (299)
Q Consensus 50 ~i~~v~lHELaH~~~ 64 (299)
....||||||+|+..
T Consensus 121 ~~a~tllHE~tH~~~ 135 (177)
T 1eb6_A 121 DQATTTLHEFTHAPG 135 (177)
T ss_dssp CHHHHHHHHHHTCTT
T ss_pred cHHHHHHHHHHhhhh
Confidence 577999999999974
No 80
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A*
Probab=61.11 E-value=3.7 Score=43.53 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhhcCCCC
Q 022290 48 YEQILDTMLHELCHNEYGP 66 (299)
Q Consensus 48 ~~~i~~v~lHELaH~~~~~ 66 (299)
+..|..||+|||+|.+.||
T Consensus 292 ~~~i~~vIAHElAHQWFGN 310 (889)
T 3ebh_A 292 YARILTVVGHEYFHQYTGN 310 (889)
T ss_dssp HHHHHHHHHHHHHTTTBTT
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 4568899999999999997
No 81
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=61.06 E-value=3.2 Score=28.91 Aligned_cols=24 Identities=25% Similarity=0.552 Sum_probs=15.7
Q ss_pred CcccCCcccccCCCCccccccCCC
Q 022290 259 GWSCKFCTLDNSSLSERCLACGEW 282 (299)
Q Consensus 259 ~W~C~~Ct~~N~~~~~~C~~Cg~~ 282 (299)
...|+.|...|....|.|.-||..
T Consensus 14 k~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 14 KYVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp EEECTTTCCEECTTCSSCSSSSSC
T ss_pred CccCCCCCCcCCCCceecCCCCCc
Confidence 456666666666666666666654
No 82
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=60.89 E-value=3.3 Score=32.74 Aligned_cols=44 Identities=27% Similarity=0.597 Sum_probs=21.8
Q ss_pred CCCccCCccc------c-ccccCCccccccCCCC------C-CCCCCCCCcccCCccc
Q 022290 224 GQMWQCNMCT------L-LNQPLALTCEACGTQR------N-KSVGNLKGWSCKFCTL 267 (299)
Q Consensus 224 ~~~W~C~~CT------~-~N~~~a~~C~aCgt~r------p-~~~~~~~~W~C~~Ct~ 267 (299)
...|.|+.|. . .|....+.|+.|...- | ....+.+.|.|+.|..
T Consensus 50 ~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 50 TYKWQCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp HTTCCCGGGCCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCccCccccCccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccc
Confidence 3579988773 1 1222334455443220 1 1113456788887753
No 83
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=60.60 E-value=12 Score=28.72 Aligned_cols=48 Identities=17% Similarity=0.307 Sum_probs=32.3
Q ss_pred CCCCCCccCCccccccccCCccccccCCCC------C-CCCCCCCCcccCCcccccC
Q 022290 221 VDVGQMWQCNMCTLLNQPLALTCEACGTQR------N-KSVGNLKGWSCKFCTLDNS 270 (299)
Q Consensus 221 ~~~~~~W~C~~CT~~N~~~a~~C~aCgt~r------p-~~~~~~~~W~C~~Ct~~N~ 270 (299)
......+.|..|.--. ..+.|+.|...- | ....+.+.|.|+.|.....
T Consensus 20 ~~d~n~~~C~vC~~~g--~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 20 TLDDSATICRVCQKPG--DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp SSSSSSSCCSSSCSSS--CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred ccCCCCCcCcCcCCCC--CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence 3444578999998654 567899996541 1 1223567899999987644
No 84
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=60.48 E-value=14 Score=25.83 Aligned_cols=44 Identities=23% Similarity=0.397 Sum_probs=29.0
Q ss_pred CCCCccCCccccccccCCccccccCCCCC-------CCCCCCCCcccCCcccc
Q 022290 223 VGQMWQCNMCTLLNQPLALTCEACGTQRN-------KSVGNLKGWSCKFCTLD 268 (299)
Q Consensus 223 ~~~~W~C~~CT~~N~~~a~~C~aCgt~rp-------~~~~~~~~W~C~~Ct~~ 268 (299)
....+.|..|.-- ...+.|+.|...-- ......+.|.|+.|...
T Consensus 6 d~~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDG--GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCC--SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCC--CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 3457889999753 45678999976521 11234578999998643
No 85
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=59.60 E-value=8.2 Score=29.29 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=22.0
Q ss_pred CCcccCCcccccC-------------------CCCccccccCCCCCCC
Q 022290 258 KGWSCKFCTLDNS-------------------SLSERCLACGEWRYSN 286 (299)
Q Consensus 258 ~~W~C~~Ct~~N~-------------------~~~~~C~~Cg~~r~~~ 286 (299)
..|.|..|+|+-. +..|+|..|+.+|...
T Consensus 26 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~K~~F 73 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDF 73 (81)
T ss_dssp CEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCCGGGE
T ss_pred ceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCCHHHc
Confidence 4699999987643 4567999999987643
No 86
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ...
Probab=59.39 E-value=2.2 Score=42.78 Aligned_cols=20 Identities=20% Similarity=0.332 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhhcCCCCC
Q 022290 48 YEQILDTMLHELCHNEYGPH 67 (299)
Q Consensus 48 ~~~i~~v~lHELaH~~~~~H 67 (299)
...+..||+|||||...||-
T Consensus 284 ~~~~~~viaHElAHqWfGnl 303 (608)
T 3u9w_A 284 DKSLSNVIAHEISHSWTGNL 303 (608)
T ss_dssp SSTTTHHHHHHHHTTTBTTT
T ss_pred cchhHHHHHHHhhhhhhcCc
Confidence 34577899999999999975
No 87
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}
Probab=59.30 E-value=4.2 Score=42.83 Aligned_cols=19 Identities=37% Similarity=0.434 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhhcCCCC
Q 022290 48 YEQILDTMLHELCHNEYGP 66 (299)
Q Consensus 48 ~~~i~~v~lHELaH~~~~~ 66 (299)
+..|..||+|||+|...||
T Consensus 284 ~~~i~~vIaHElAHqWfGn 302 (867)
T 2gtq_A 284 FEGIESVVGHEYFHNWTGN 302 (867)
T ss_dssp HHHHHHHHHHHHHTTTBTT
T ss_pred HHHHHHHHHHHHHHHhcCc
Confidence 4678899999999999997
No 88
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion, cleavag of basic residues, EGF-like domain, glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A {Homo sapiens}
Probab=59.27 E-value=3.6 Score=40.97 Aligned_cols=22 Identities=18% Similarity=0.015 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhhcCCCCCChhH
Q 022290 50 QILDTMLHELCHNEYGPHNADF 71 (299)
Q Consensus 50 ~i~~v~lHELaH~~~~~H~~~F 71 (299)
.+..||+|||.|++-++||..-
T Consensus 133 ~~A~t~AHELGHnLGm~HD~~~ 154 (510)
T 3g5c_A 133 LMAVTLAQSLAHNIGIISDKRK 154 (510)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH
T ss_pred hhhHHHHHHHHHHcCCccCCCC
Confidence 5778999999999999999753
No 89
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=59.11 E-value=2.5 Score=36.43 Aligned_cols=11 Identities=27% Similarity=1.129 Sum_probs=8.4
Q ss_pred CccCCcccccc
Q 022290 226 MWQCNMCTLLN 236 (299)
Q Consensus 226 ~W~C~~CT~~N 236 (299)
.|.|..|.++=
T Consensus 155 ~~~C~~CG~~~ 165 (191)
T 1lko_A 155 KWRCRNCGYVH 165 (191)
T ss_dssp EEEETTTCCEE
T ss_pred eEEECCCCCEe
Confidence 58888888773
No 90
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=58.85 E-value=19 Score=30.31 Aligned_cols=52 Identities=23% Similarity=0.331 Sum_probs=33.9
Q ss_pred CccCCccccccccCCccccccCCCC------C-CCCCCCCCcccCCcccccCCC-Ccccccc
Q 022290 226 MWQCNMCTLLNQPLALTCEACGTQR------N-KSVGNLKGWSCKFCTLDNSSL-SERCLAC 279 (299)
Q Consensus 226 ~W~C~~CT~~N~~~a~~C~aCgt~r------p-~~~~~~~~W~C~~Ct~~N~~~-~~~C~~C 279 (299)
.+.|..|.- ....+.|+.|...- | ....+.+.|.|+.|.-...+. ...|..+
T Consensus 4 ~~~C~~C~~--~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~~~~e~dc~~~ 63 (184)
T 3o36_A 4 EDWCAVCQN--GGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDCDAP 63 (184)
T ss_dssp CSSCTTTCC--CSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSSCSSCCGGGCC
T ss_pred CCccccCCC--CCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCccccccccccccc
Confidence 467999983 34567899997431 1 112345789999999877654 3455543
No 91
>3e11_A Predicted zincin-like metalloprotease; DUF1025 family protein, zincin-like fold, conserved matrix metalloprotease motif; 1.80A {Acidothermus cellulolyticus 11B} SCOP: d.92.1.17
Probab=58.10 E-value=4.2 Score=32.58 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhhhcCC
Q 022290 48 YEQILDTMLHELCHNEY 64 (299)
Q Consensus 48 ~~~i~~v~lHELaH~~~ 64 (299)
.+.|..||+||++|..-
T Consensus 87 ~~~V~~vvvhEiahh~G 103 (114)
T 3e11_A 87 IDEVRKTVVHEIAHHFG 103 (114)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 45677999999999764
No 92
>3khi_A Putative metal-dependent hydrolase; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; 1.95A {Klebsiella pneumoniae subsp} PDB: 3dl1_A
Probab=57.03 E-value=5.9 Score=36.35 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=22.0
Q ss_pred ccceecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCh
Q 022290 21 LLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNA 69 (299)
Q Consensus 21 llGlN~n~G~~I~LrLR~~~~~~~f~p~~~i~~v~lHELaH~~~~~H~~ 69 (299)
++|--...| .|.|.+..... .|.. .=..|++||+||.+.+-...
T Consensus 119 ~~GEaw~~G-pVILSW~dv~~--g~~~--dg~NvvIHEFAHkLD~~~G~ 162 (267)
T 3khi_A 119 QSGQSWQQG-PVVLNWLDIQD--SFDA--SGFNLVVHEVAHKLDTRNGD 162 (267)
T ss_dssp C-----CCS-CEEEEHHHHHH--HTSS--SSCCHHHHHHHHHHHTTTSC
T ss_pred ccccccCCC-eEEEEHHHHhh--hccc--CCCchHHhHHHHHHHHhcCC
Confidence 345444455 58888853110 0000 11279999999987655444
No 93
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=56.91 E-value=7.2 Score=27.79 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=29.9
Q ss_pred CCCCccCCccccccccCCccccccCCCC------C-CCCCCCCCcccCCcccccC
Q 022290 223 VGQMWQCNMCTLLNQPLALTCEACGTQR------N-KSVGNLKGWSCKFCTLDNS 270 (299)
Q Consensus 223 ~~~~W~C~~CT~~N~~~a~~C~aCgt~r------p-~~~~~~~~W~C~~Ct~~N~ 270 (299)
....|.|..|.-- ...+.|+.|...- | ....+.+.|.|+.|...+.
T Consensus 5 ~~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 5 QKNEDECAVCRDG--GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATV 57 (66)
T ss_dssp CSCCCSBSSSSCC--SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCC
T ss_pred CCCCCCCccCCCC--CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCccc
Confidence 3467999999864 3567899987531 1 1123457899988875443
No 94
>1bqb_A Protein (aureolysin); hydrolase, metalloproteinase; 1.72A {Staphylococcus aureus} SCOP: d.92.1.2
Probab=56.73 E-value=4.2 Score=37.88 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=19.4
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCCC
Q 022290 43 WDFFPYEQILDTMLHELCHNEYGP 66 (299)
Q Consensus 43 ~~f~p~~~i~~v~lHELaH~~~~~ 66 (299)
..|.|+..-..|+.|||+|=|.-.
T Consensus 130 ~~f~~~~~~lDVv~HE~tHGVt~~ 153 (301)
T 1bqb_A 130 RTFTNLSGANDVVAHEITHGVTQQ 153 (301)
T ss_dssp SSBSCGGGCHHHHHHHHHHHHHHH
T ss_pred cccCCcccccceeeeecccceecc
Confidence 468899877899999999977543
No 95
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=56.73 E-value=12 Score=26.25 Aligned_cols=45 Identities=18% Similarity=0.489 Sum_probs=30.3
Q ss_pred CCCCCccCCccccccccCCccccccCCC------CC-CCCCCCCCcccCCcccc
Q 022290 222 DVGQMWQCNMCTLLNQPLALTCEACGTQ------RN-KSVGNLKGWSCKFCTLD 268 (299)
Q Consensus 222 ~~~~~W~C~~CT~~N~~~a~~C~aCgt~------rp-~~~~~~~~W~C~~Ct~~ 268 (299)
.....+.|..|.-- ...+.|+.|... .| ....+.+.|.|+.|...
T Consensus 7 ~~~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 7 ETDHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SSCCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred cCCCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 34467899999864 456779999753 11 11234578999999764
No 96
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=56.72 E-value=4.9 Score=42.34 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHHhhhcCCCCC
Q 022290 46 FPYEQILDTMLHELCHNEYGPH 67 (299)
Q Consensus 46 ~p~~~i~~v~lHELaH~~~~~H 67 (299)
.....|..||+|||||..+||-
T Consensus 311 ~~~~~~~~viaHElAHqWFGnl 332 (909)
T 4fke_A 311 SNKERVVTVIAHELAHQWFGNL 332 (909)
T ss_dssp HHHHHHHHHHHHHHHTTTBTTT
T ss_pred HHHHHHHHHHHHHHHhhhhcCe
Confidence 3456788999999999999975
No 97
>4ger_A Gentlyase metalloprotease; metalloproteinase, tissue disaggregation, thermoly protease, hydrolase; HET: LYS; 1.59A {Paenibacillus polymyxa}
Probab=56.63 E-value=4.3 Score=37.92 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=20.8
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCCCC
Q 022290 43 WDFFPYEQILDTMLHELCHNEYGPH 67 (299)
Q Consensus 43 ~~f~p~~~i~~v~lHELaH~~~~~H 67 (299)
..|.|+..-++|+.|||+|=|.-.+
T Consensus 121 ~~f~~~~~slDVvaHEltHGVt~~t 145 (304)
T 4ger_A 121 STFIAFSGDPDVVGHELTHGVTEYT 145 (304)
T ss_dssp SSBCCGGGSHHHHHHHHHHHHHHTT
T ss_pred ccccccccccchhhhcccccccccc
Confidence 4789988778999999999886655
No 98
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=56.63 E-value=5 Score=42.53 Aligned_cols=19 Identities=37% Similarity=0.405 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhhcCCCC
Q 022290 48 YEQILDTMLHELCHNEYGP 66 (299)
Q Consensus 48 ~~~i~~v~lHELaH~~~~~ 66 (299)
+..|..||+|||+|...||
T Consensus 309 ~~~i~~vIAHElAHqWFGN 327 (891)
T 3b34_A 309 YLDIERVIGHEYFHNWTGN 327 (891)
T ss_dssp HHHHHHHHHHHHHTTTBTT
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 4678899999999999996
No 99
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=56.35 E-value=5.1 Score=41.51 Aligned_cols=19 Identities=21% Similarity=0.454 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhhhcCCCC
Q 022290 48 YEQILDTMLHELCHNEYGP 66 (299)
Q Consensus 48 ~~~i~~v~lHELaH~~~~~ 66 (299)
+..+..||+|||+|...||
T Consensus 256 ~~~~~~viaHElaHqWfGn 274 (780)
T 1z5h_A 256 KRNSANVIAHEIAHQWFGD 274 (780)
T ss_dssp HHHHHHHHHHHHHHTTBTT
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 4568899999999999996
No 100
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.31 E-value=7.2 Score=26.81 Aligned_cols=42 Identities=21% Similarity=0.468 Sum_probs=27.9
Q ss_pred CCCCccCCccccccccCCccccccCCCC------C-CCCCCCCCcccCCcc
Q 022290 223 VGQMWQCNMCTLLNQPLALTCEACGTQR------N-KSVGNLKGWSCKFCT 266 (299)
Q Consensus 223 ~~~~W~C~~CT~~N~~~a~~C~aCgt~r------p-~~~~~~~~W~C~~Ct 266 (299)
....+.|..|.-.+ ..+.|+.|...- | ....+.+.|.|+.|.
T Consensus 6 ~~~~~~C~vC~~~g--~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 6 SGHEDFCSVCRKSG--QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CSSCCSCSSSCCSS--CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCCccCCCCC--eEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 34578899998754 567799987541 1 112345689998885
No 101
>3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase; 2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A
Probab=55.38 E-value=7.4 Score=36.13 Aligned_cols=40 Identities=15% Similarity=-0.014 Sum_probs=30.4
Q ss_pred ccceecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHHhhhcCCCCCC
Q 022290 21 LLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHN 68 (299)
Q Consensus 21 llGlN~n~G~~I~LrLR~~~~~~~f~p~~~i~~v~lHELaH~~~~~H~ 68 (299)
..|+-.+....|.|+-+. +.....-||+|||+|++...+.
T Consensus 74 ~~G~~~~~~~~I~LN~~~--------~~~rqrFTLAHELGHllLh~~~ 113 (301)
T 3dte_A 74 RDGAYDPEHHVILINSQV--------RPERQRFTLAHEISHALLLGDD 113 (301)
T ss_dssp CCEEEETTTTEEEEETTS--------CHHHHHHHHHHHHHHHHHHHCH
T ss_pred CCEEEECCCcEEEEcCCC--------ChhhHHHHHHHHHHHHHhcccc
Confidence 457766667788888764 5678889999999999865444
No 102
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=55.28 E-value=5.4 Score=42.02 Aligned_cols=19 Identities=37% Similarity=0.422 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhhcCCCC
Q 022290 48 YEQILDTMLHELCHNEYGP 66 (299)
Q Consensus 48 ~~~i~~v~lHELaH~~~~~ 66 (299)
...|..||+|||||...||
T Consensus 299 ~~~~~~viaHElAHqWFGn 317 (897)
T 2xdt_A 299 KLGITMTVAHELAHQWFGN 317 (897)
T ss_dssp HHHHHHHHHHHHHTTTBTT
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 4578899999999999996
No 103
>3dnz_A Thermolysin; hydrolase, metalloproteinase, calcium, metal-binding, metalloprotease, protease, secreted, zinc, zymogen; HET: LYS; 1.20A {Bacillus thermoproteolyticus} PDB: 1kjo_A* 1kjp_A* 1kkk_A* 1kl6_A* 1kr6_A* 1kro_A* 1ks7_A* 1kto_A* 1y3g_E* 2whz_A* 2wi0_A* 1kei_A* 3do0_A* 3do1_A* 3do2_A* 3fb0_A 3fbo_A 3fgd_A* 3flf_A* 3fv4_A* ...
Probab=52.68 E-value=5.4 Score=37.48 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=20.2
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCCCC
Q 022290 43 WDFFPYEQILDTMLHELCHNEYGPH 67 (299)
Q Consensus 43 ~~f~p~~~i~~v~lHELaH~~~~~H 67 (299)
..|.|+-.-++|+.|||+|=|.-.+
T Consensus 128 ~~f~~~~~slDVv~HE~tHgvt~~~ 152 (316)
T 3dnz_A 128 QTFIPLSGGIDVVAHELTHAVTDYT 152 (316)
T ss_dssp SSBSCGGGCHHHHHHHHHHHHHHHT
T ss_pred cccccccccccceeeeecccccccc
Confidence 4789998778999999999775544
No 104
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=52.59 E-value=8.5 Score=27.03 Aligned_cols=34 Identities=15% Similarity=0.066 Sum_probs=19.2
Q ss_pred cccCCccccccCCCCCCCCCCCCCcccCCccccc
Q 022290 236 NQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDN 269 (299)
Q Consensus 236 N~~~a~~C~aCgt~rp~~~~~~~~W~C~~Ct~~N 269 (299)
|....+.|..|+..........+.+.|..|+++-
T Consensus 7 ~ll~~~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 7 DALPRVTCPNHPDAILVEDYRAGDMICPECGLVV 40 (58)
T ss_dssp CCCSCCSBTTBSSSCCEECSSSCCEECTTTCCEE
T ss_pred hccccccCcCCCCCceeEeCCCCeEEeCCCCCEE
Confidence 3344456777765433223445667777777654
No 105
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=52.11 E-value=5.8 Score=33.70 Aligned_cols=27 Identities=22% Similarity=0.524 Sum_probs=20.6
Q ss_pred CcccCCcccccCCC-CccccccCCCCCC
Q 022290 259 GWSCKFCTLDNSSL-SERCLACGEWRYS 285 (299)
Q Consensus 259 ~W~C~~Ct~~N~~~-~~~C~~Cg~~r~~ 285 (299)
.|.|..|+|.-... ...|.+|+.++..
T Consensus 138 ~~~C~~CG~i~~~~~p~~CP~Cg~~~~~ 165 (170)
T 3pwf_A 138 VYICPICGYTAVDEAPEYCPVCGAPKEK 165 (170)
T ss_dssp EEECTTTCCEEESCCCSBCTTTCCBGGG
T ss_pred eeEeCCCCCeeCCCCCCCCCCCCCCHHH
Confidence 69999999864433 3599999988753
No 106
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=51.47 E-value=27 Score=24.99 Aligned_cols=40 Identities=20% Similarity=0.478 Sum_probs=26.1
Q ss_pred CccCCccccccccCCccccccCCCC------C-CCCCCCCCcccCCccc
Q 022290 226 MWQCNMCTLLNQPLALTCEACGTQR------N-KSVGNLKGWSCKFCTL 267 (299)
Q Consensus 226 ~W~C~~CT~~N~~~a~~C~aCgt~r------p-~~~~~~~~W~C~~Ct~ 267 (299)
.-.|.+|. +....+.|+.|...- | ......+.|.|+.|+.
T Consensus 12 ~~~C~vC~--~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 12 GARCGVCG--DGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp TCCCTTTS--CCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCcCCCC--CCCeEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 35699996 344567899997541 1 1123457899999964
No 107
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=51.12 E-value=9.4 Score=34.21 Aligned_cols=43 Identities=21% Similarity=0.447 Sum_probs=20.4
Q ss_pred CCCccCCcc-----ccc-cccCCccccccCCCC------C-CCCCCCC-CcccCCcc
Q 022290 224 GQMWQCNMC-----TLL-NQPLALTCEACGTQR------N-KSVGNLK-GWSCKFCT 266 (299)
Q Consensus 224 ~~~W~C~~C-----T~~-N~~~a~~C~aCgt~r------p-~~~~~~~-~W~C~~Ct 266 (299)
+..|.|..| .-. +....+.|+.|...- | ....+.+ .|.|+.|.
T Consensus 167 ~~~w~C~~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~ 223 (226)
T 3ask_A 167 DVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 223 (226)
T ss_dssp CTTSCCTTTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC
T ss_pred CcCEecCCCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCc
Confidence 345775544 321 233445566665421 1 1112344 68888885
No 108
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=50.89 E-value=6.2 Score=31.66 Aligned_cols=25 Identities=36% Similarity=0.663 Sum_probs=17.5
Q ss_pred CCCcccCCcccccCCCCc-------cccccCC
Q 022290 257 LKGWSCKFCTLDNSSLSE-------RCLACGE 281 (299)
Q Consensus 257 ~~~W~C~~Ct~~N~~~~~-------~C~~Cg~ 281 (299)
...-.|..|.....+.|. .|.+||.
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl 88 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANGDPVCNACGL 88 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTSCEECHHHHH
T ss_pred cccccCCCcCCCCcceeEECCCCCCcchHHHH
Confidence 345678888877766554 7888875
No 109
>3lmc_A Peptidase, zinc-dependent; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, MUR16; 2.00A {Methanocorpusculum labreanum}
Probab=50.17 E-value=8 Score=34.31 Aligned_cols=22 Identities=23% Similarity=0.129 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhhhcCCCCCCh
Q 022290 48 YEQILDTMLHELCHNEYGPHNA 69 (299)
Q Consensus 48 ~~~i~~v~lHELaH~~~~~H~~ 69 (299)
.+.|..+++|||.|+.-.+|-.
T Consensus 140 ~~Rv~k~~~HElGH~lGL~HC~ 161 (210)
T 3lmc_A 140 IDRIVKEGAHEIGHLFGLGHCD 161 (210)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHHHHhcCCCCCC
Confidence 6778899999999999999954
No 110
>2x7m_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi; 1.50A {Methanopyrus kandleri}
Probab=49.77 E-value=8.2 Score=33.61 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhhcCCCCC
Q 022290 49 EQILDTMLHELCHNEYGPH 67 (299)
Q Consensus 49 ~~i~~v~lHELaH~~~~~H 67 (299)
..|..||+|||.|+.-..|
T Consensus 137 ~r~~~~~~HElGH~lGl~H 155 (195)
T 2x7m_A 137 ERVVKELTHELGHTFGLGH 155 (195)
T ss_dssp HHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhhcCCCC
Confidence 4567999999999999999
No 111
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=49.49 E-value=11 Score=30.79 Aligned_cols=46 Identities=17% Similarity=0.259 Sum_probs=26.3
Q ss_pred Ccc---CCccccccccCCccccccCCCCCCCCCCCCCcccCCcccccCCCCccccccCC
Q 022290 226 MWQ---CNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGE 281 (299)
Q Consensus 226 ~W~---C~~CT~~N~~~a~~C~aCgt~rp~~~~~~~~W~C~~Ct~~N~~~~~~C~~Cg~ 281 (299)
.|. |+.|.+.+..... .++.. ..+..|.|..|... ...|.|..||.
T Consensus 6 ~W~~e~~~~C~h~~~l~q~-------~~~~~-~~~~~~~C~~C~~~--~~LwlCL~CG~ 54 (129)
T 2g45_A 6 AWDGEVRQVSKHAFSLKQL-------DNPAR-IPPCGWKCSKCDMR--ENLWLNLTDGS 54 (129)
T ss_dssp -----CCEECTTTTTCCCC-------SSCCC-CCCCBCCCSSSSCC--SSEEEETTTCC
T ss_pred hhcCCCCCCCCCcCccccc-------ccccc-cCCCCCcCccccCc--CceEEeccCCc
Confidence 466 7777777643221 11111 23346888888765 36888888887
No 112
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=49.19 E-value=7.9 Score=41.29 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhhcCCCC
Q 022290 48 YEQILDTMLHELCHNEYGP 66 (299)
Q Consensus 48 ~~~i~~v~lHELaH~~~~~ 66 (299)
...|..||+|||||...||
T Consensus 361 k~~~~~vIaHElAHqWFGn 379 (967)
T 3se6_A 361 KLWVTRVIAHELAHQWFGN 379 (967)
T ss_dssp HHHHHHHHHHHHGGGTBTT
T ss_pred hHhHHHHHHHHHHHHHhcC
Confidence 4568899999999999997
No 113
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=48.02 E-value=8.1 Score=27.17 Aligned_cols=48 Identities=19% Similarity=0.544 Sum_probs=31.6
Q ss_pred CCCccCCccccc---cccCCccccccCCCC------CCCC----CCCCCcccCCcccccCC
Q 022290 224 GQMWQCNMCTLL---NQPLALTCEACGTQR------NKSV----GNLKGWSCKFCTLDNSS 271 (299)
Q Consensus 224 ~~~W~C~~CT~~---N~~~a~~C~aCgt~r------p~~~----~~~~~W~C~~Ct~~N~~ 271 (299)
.....|.+|.-. +....+.|+.|...- |... ...+.|.|..|...+..
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~~ 64 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTT 64 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTSC
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcccc
Confidence 356889999865 335667899997541 2111 14578999999876543
No 114
>2lbz_A Thuricin17, thurincin H; helical loops, crosslinked, antimicrobial protein; HET: DSG 2TL DSN; NMR {Bacillus thuringiensis}
Probab=46.91 E-value=8 Score=23.61 Aligned_cols=17 Identities=41% Similarity=1.146 Sum_probs=11.8
Q ss_pred CccCCccccccccCCccccccCCCC
Q 022290 226 MWQCNMCTLLNQPLALTCEACGTQR 250 (299)
Q Consensus 226 ~W~C~~CT~~N~~~a~~C~aCgt~r 250 (299)
.|+|-.| +.|.+|..+-
T Consensus 1 dwtcwsc--------lvcaacsvel 17 (31)
T 2lbz_A 1 DWTCWSC--------LVCAACSVEL 17 (31)
T ss_dssp CCCTTGG--------GGGGGCCSCS
T ss_pred CccHHHH--------HHHHHhHHHH
Confidence 4788777 4588887653
No 115
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=46.75 E-value=8.3 Score=26.79 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=16.9
Q ss_pred CCccCCccccccccCCccccccCCC
Q 022290 225 QMWQCNMCTLLNQPLALTCEACGTQ 249 (299)
Q Consensus 225 ~~W~C~~CT~~N~~~a~~C~aCgt~ 249 (299)
....|+.|...|+..+..|.-||..
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSC
T ss_pred CCccCCCCCCcCCCCceecCCCCCc
Confidence 4567777777777666666666644
No 116
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=46.25 E-value=9.9 Score=28.81 Aligned_cols=48 Identities=19% Similarity=0.442 Sum_probs=33.2
Q ss_pred CCCCccCCccccc---cccCCccccccCCCC------CCCCCCCCCcccCCcccccCC
Q 022290 223 VGQMWQCNMCTLL---NQPLALTCEACGTQR------NKSVGNLKGWSCKFCTLDNSS 271 (299)
Q Consensus 223 ~~~~W~C~~CT~~---N~~~a~~C~aCgt~r------p~~~~~~~~W~C~~Ct~~N~~ 271 (299)
.+..+.|.+|.-. +....+.|+.|...- |.. .+.+.|.|+.|...+..
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~-vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY-IPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS-CCSSCCCCHHHHHHTTS
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc-cCCCceECccccCccch
Confidence 3456899999865 455677899997642 111 34578999999876543
No 117
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=44.76 E-value=14 Score=26.67 Aligned_cols=46 Identities=20% Similarity=0.515 Sum_probs=30.2
Q ss_pred CCCCccCCcccccccc-CCccccccCCC------CCCCC-CCCCCcccCCcccc
Q 022290 223 VGQMWQCNMCTLLNQP-LALTCEACGTQ------RNKSV-GNLKGWSCKFCTLD 268 (299)
Q Consensus 223 ~~~~W~C~~CT~~N~~-~a~~C~aCgt~------rp~~~-~~~~~W~C~~Ct~~ 268 (299)
....+.|..|.-.... .-+.|+.|..- .+... ...+.|.|+.|...
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANK 68 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCc
Confidence 4467999999877544 45779999643 11111 23468999999754
No 118
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=44.12 E-value=7.3 Score=33.48 Aligned_cols=10 Identities=30% Similarity=0.833 Sum_probs=6.6
Q ss_pred CccccccCCC
Q 022290 240 ALTCEACGTQ 249 (299)
Q Consensus 240 a~~C~aCgt~ 249 (299)
.-.|..||-.
T Consensus 155 ~~~C~~CG~~ 164 (191)
T 1lko_A 155 KWRCRNCGYV 164 (191)
T ss_dssp EEEETTTCCE
T ss_pred eEEECCCCCE
Confidence 3468888854
No 119
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=43.63 E-value=19 Score=30.93 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=32.4
Q ss_pred CCccCCccccccccCCccccccCCCC------C-CCCCCCCCcccCCcccccCCC-CccccccCC
Q 022290 225 QMWQCNMCTLLNQPLALTCEACGTQR------N-KSVGNLKGWSCKFCTLDNSSL-SERCLACGE 281 (299)
Q Consensus 225 ~~W~C~~CT~~N~~~a~~C~aCgt~r------p-~~~~~~~~W~C~~Ct~~N~~~-~~~C~~Cg~ 281 (299)
..+.|..|.-- ...+.|+.|...- | ....+.+.|.|+.|.-..... ...|..+..
T Consensus 6 ~~~~C~~C~~~--g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~~~~~~c~~~~~ 68 (207)
T 3u5n_A 6 NEDWCAVCQNG--GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVEYDCDNLQH 68 (207)
T ss_dssp SCSSBTTTCCC--EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSSCSSCCSCC----
T ss_pred CCCCCCCCCCC--CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccccccccccccccc
Confidence 45779999743 3467899987431 1 122456789999998655443 345665543
No 120
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=42.21 E-value=13 Score=25.72 Aligned_cols=43 Identities=19% Similarity=0.373 Sum_probs=28.4
Q ss_pred CCccCCccccccccCCccccccCCCC------C-CCCCCCCCcccCCccccc
Q 022290 225 QMWQCNMCTLLNQPLALTCEACGTQR------N-KSVGNLKGWSCKFCTLDN 269 (299)
Q Consensus 225 ~~W~C~~CT~~N~~~a~~C~aCgt~r------p-~~~~~~~~W~C~~Ct~~N 269 (299)
..+.|..|.-.+ ..+.|+.|...- | ....+.+.|.|+.|....
T Consensus 4 ~~~~C~vC~~~g--~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKSG--QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCCS--SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCCC--cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 468899998653 567799887531 1 112345789999987543
No 121
>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A* 2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A* 3shi_A
Probab=42.17 E-value=11 Score=31.30 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhhcCCCCCCh
Q 022290 50 QILDTMLHELCHNEYGPHNA 69 (299)
Q Consensus 50 ~i~~v~lHELaH~~~~~H~~ 69 (299)
.+..|++|||-|.+--.|+.
T Consensus 110 ~~~~v~~HEiGHaLGL~H~~ 129 (168)
T 1cge_A 110 NLHRVAAHELGHSLGLSHST 129 (168)
T ss_dssp BHHHHHHHHHHHHTTCCCCS
T ss_pred chhhhhhhHhHhhhcCCCCC
Confidence 36799999999999999985
No 122
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=42.14 E-value=12 Score=26.59 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=23.7
Q ss_pred CCCCccCCccccccccCCccccccCCC
Q 022290 223 VGQMWQCNMCTLLNQPLALTCEACGTQ 249 (299)
Q Consensus 223 ~~~~W~C~~CT~~N~~~a~~C~aCgt~ 249 (299)
.-..+.|-.|.-.|++.+..|--|+..
T Consensus 16 ~~~k~ICrkC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 16 VFLKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp SCCCEEETTTCCEECTTCSSCTTTCCC
T ss_pred HhchhhhccccCcCCcccccccCCCCC
Confidence 346799999999999999999999865
No 123
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens}
Probab=41.80 E-value=9.4 Score=31.23 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhhcCCCCCChh
Q 022290 50 QILDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 50 ~i~~v~lHELaH~~~~~H~~~ 70 (299)
.+..|++|||-|.+--.|+..
T Consensus 107 ~~~~v~~HEiGHaLGL~H~~~ 127 (160)
T 2jsd_A 107 NLFTVAAHEFGHALGLAHSTD 127 (160)
T ss_dssp EHHHHHHHHHHHHHTCCCCCC
T ss_pred hhHHHHHHHhHhhhcCCCCCC
Confidence 468999999999998888763
No 124
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.68 E-value=19 Score=27.35 Aligned_cols=48 Identities=19% Similarity=0.439 Sum_probs=31.1
Q ss_pred CCCCCCccCCcccccc-ccCCccccccCCCC------C-CCCCCCCCcccCCcccc
Q 022290 221 VDVGQMWQCNMCTLLN-QPLALTCEACGTQR------N-KSVGNLKGWSCKFCTLD 268 (299)
Q Consensus 221 ~~~~~~W~C~~CT~~N-~~~a~~C~aCgt~r------p-~~~~~~~~W~C~~Ct~~ 268 (299)
......+.|.+|.-.. ....+.|+.|...- | ....+.+.|.|+.|...
T Consensus 11 ~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hhccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3444567899998765 34566799987531 1 12235578999999754
No 125
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea}
Probab=41.13 E-value=7.4 Score=38.96 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhhcCCCC
Q 022290 50 QILDTMLHELCHNEYGP 66 (299)
Q Consensus 50 ~i~~v~lHELaH~~~~~ 66 (299)
.+..||+|||+|...||
T Consensus 293 ~~~~viaHElaHqWfGn 309 (605)
T 3cia_A 293 SLVNLIAHELAHSWSGN 309 (605)
T ss_dssp CSTHHHHHHHHHTTBTT
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 35689999999999997
No 126
>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV collagenase) (92 kDa gelatinase)...; S1-prime pocket, hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A {Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A* 2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A*
Probab=39.73 E-value=13 Score=30.66 Aligned_cols=21 Identities=14% Similarity=0.093 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhhcCCCCCChh
Q 022290 50 QILDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 50 ~i~~v~lHELaH~~~~~H~~~ 70 (299)
.+..|++|||-|.+--.|+..
T Consensus 110 ~~~~va~HEiGHaLGL~Hs~~ 130 (159)
T 2ovx_A 110 SLFLVAAHQFGHALGLDHSSV 130 (159)
T ss_dssp EHHHHHHHHHHHHTTCCCCSC
T ss_pred chhhhhhhhhhhhhcCCCCCC
Confidence 467999999999999999874
No 127
>2vqx_A Metalloproteinase; thermolysin-like structure, zinc, protease, hydrolase, metalloprotease; 1.82A {Serratia proteamaculans}
Probab=39.59 E-value=9.2 Score=36.24 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=17.6
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCC
Q 022290 44 DFFPYEQILDTMLHELCHNEYGPH 67 (299)
Q Consensus 44 ~f~p~~~i~~v~lHELaH~~~~~H 67 (299)
.|.++..=.+|+.|||+|=|.-..
T Consensus 149 ~f~~~~~~lDVv~HEltHGVt~~~ 172 (341)
T 2vqx_A 149 IFNRFTIAIDVVGHALAHGVTESE 172 (341)
T ss_dssp SBCCTTSCHHHHHHHHHHHHHHHT
T ss_pred ccCCcccchhhhhhhcccceeccc
Confidence 466666567999999999765433
No 128
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=39.52 E-value=11 Score=32.77 Aligned_cols=10 Identities=30% Similarity=0.634 Sum_probs=6.7
Q ss_pred CccccccCCC
Q 022290 240 ALTCEACGTQ 249 (299)
Q Consensus 240 a~~C~aCgt~ 249 (299)
.-.|..||-.
T Consensus 171 ~~~C~~CG~i 180 (202)
T 1yuz_A 171 FHLCPICGYI 180 (202)
T ss_dssp EEECSSSCCE
T ss_pred EEEECCCCCE
Confidence 3468888854
No 129
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=39.51 E-value=26 Score=25.92 Aligned_cols=32 Identities=25% Similarity=0.638 Sum_probs=20.7
Q ss_pred ccccccCCCCCCCCCCCCCcccCCcccccCCCC
Q 022290 241 LTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLS 273 (299)
Q Consensus 241 ~~C~aCgt~rp~~~~~~~~W~C~~Ct~~N~~~~ 273 (299)
..|..|+..+-.. ...+.|.|..|.+.--...
T Consensus 27 y~C~fCgk~~vkR-~a~GIW~C~~C~~~~AGGA 58 (72)
T 3jyw_9 27 YDCSFCGKKTVKR-GAAGIWTCSCCKKTVAGGA 58 (72)
T ss_dssp BCCSSCCSSCBSB-CSSSCBCCSSSCCCCCCSS
T ss_pred ccCCCCCCceeEe-cCCCeEECCCCCCEEeCCc
Confidence 4588888664332 2357899999987654433
No 130
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Probab=39.08 E-value=11 Score=38.02 Aligned_cols=16 Identities=38% Similarity=0.553 Sum_probs=14.5
Q ss_pred HHHHHHHHhhhcCCCC
Q 022290 51 ILDTMLHELCHNEYGP 66 (299)
Q Consensus 51 i~~v~lHELaH~~~~~ 66 (299)
+..||+|||+|...||
T Consensus 295 ~~~viaHElAHqWfGn 310 (632)
T 2xq0_A 295 NIDVIAHELAHSWSGN 310 (632)
T ss_dssp STHHHHHHHHHTTBTT
T ss_pred HHHHHHHHHHHHHhcC
Confidence 5689999999999996
No 131
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=37.57 E-value=38 Score=26.04 Aligned_cols=47 Identities=21% Similarity=0.564 Sum_probs=31.8
Q ss_pred CCccCCccccccccCCccccccCCCCCC----------C---------CCCCCCcccCCcccccCC
Q 022290 225 QMWQCNMCTLLNQPLALTCEACGTQRNK----------S---------VGNLKGWSCKFCTLDNSS 271 (299)
Q Consensus 225 ~~W~C~~CT~~N~~~a~~C~aCgt~rp~----------~---------~~~~~~W~C~~Ct~~N~~ 271 (299)
..=.|.+|-..-...-..|..|+..--. . +....+|+|..|-.+|..
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL~lL 79 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNINLL 79 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCCSS
T ss_pred CCcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchhhhh
Confidence 3456888876666666679999875211 0 035678999999877764
No 132
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=37.49 E-value=24 Score=23.38 Aligned_cols=39 Identities=18% Similarity=0.496 Sum_probs=23.8
Q ss_pred CCcccccc-ccCCccccccCCCC------C-CCCCCCCCcccCCccc
Q 022290 229 CNMCTLLN-QPLALTCEACGTQR------N-KSVGNLKGWSCKFCTL 267 (299)
Q Consensus 229 C~~CT~~N-~~~a~~C~aCgt~r------p-~~~~~~~~W~C~~Ct~ 267 (299)
|..|.... ....+.|+.|...- | ....+.+.|.|+.|..
T Consensus 3 C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 66776553 34556788887531 1 1123456899999853
No 133
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=37.43 E-value=19 Score=26.20 Aligned_cols=45 Identities=20% Similarity=0.462 Sum_probs=30.2
Q ss_pred CCCCccCCccccc---cccCCccccccCCCC------CCCCCCCCCcccCCcccc
Q 022290 223 VGQMWQCNMCTLL---NQPLALTCEACGTQR------NKSVGNLKGWSCKFCTLD 268 (299)
Q Consensus 223 ~~~~W~C~~CT~~---N~~~a~~C~aCgt~r------p~~~~~~~~W~C~~Ct~~ 268 (299)
......|.+|.-. +....+.|+.|...- |.. .+.+.|.|+.|...
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~-vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY-IPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS-CCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc-CCCCCcCCccCcCc
Confidence 3456789999755 555677899997531 221 34578999998653
No 134
>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11
Probab=35.91 E-value=16 Score=30.16 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhhcCCCCCChh
Q 022290 50 QILDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 50 ~i~~v~lHELaH~~~~~H~~~ 70 (299)
.+..|++|||-|.+--.|+..
T Consensus 112 ~~~~v~~HEiGHaLGL~H~~~ 132 (165)
T 1hv5_A 112 DLLQVAAHEFGHVLGLQHTTA 132 (165)
T ss_dssp EHHHHHHHHHHHHTTCCCCSC
T ss_pred hhhhhHHHHhHhhhCCCCCCC
Confidence 468999999999999888874
No 135
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=35.51 E-value=6.2 Score=30.00 Aligned_cols=33 Identities=24% Similarity=0.613 Sum_probs=20.2
Q ss_pred ccccccCCCCCCCCCCCCCcccCCcccccCCCCc
Q 022290 241 LTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSE 274 (299)
Q Consensus 241 ~~C~aCgt~rp~~~~~~~~W~C~~Ct~~N~~~~~ 274 (299)
-.|..|+...-.. ...+.|.|+.|.+......+
T Consensus 28 y~Cp~CG~~~v~r-~atGiW~C~~Cg~~~aggay 60 (83)
T 1vq8_Z 28 HACPNCGEDRVDR-QGTGIWQCSYCDYKFTGGSY 60 (83)
T ss_dssp EECSSSCCEEEEE-EETTEEEETTTCCEEECCSS
T ss_pred CcCCCCCCcceec-cCCCeEECCCCCCEecCCEe
Confidence 3577777542111 23467999999887665543
No 136
>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor, metalloprotease, dependent, peptidase; 1.70A {Tannerella forsythia} PDB: 2xs3_A
Probab=35.00 E-value=13 Score=30.82 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhhcCCCCCChh
Q 022290 50 QILDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 50 ~i~~v~lHELaH~~~~~H~~~ 70 (299)
.+..|++|||-|.+--.|+..
T Consensus 114 ~~~~v~~HEiGHaLGL~H~~~ 134 (167)
T 2xs4_A 114 DLITVAAHEIGHLLGIEHSNV 134 (167)
T ss_dssp EHHHHHHHHHHHHHTBCCCSC
T ss_pred chhhhHHHHHHHhhcCCCCCC
Confidence 577999999999998888764
No 137
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=34.56 E-value=16 Score=25.92 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=23.3
Q ss_pred CCCcccCCcccccCCCCccccccCCC
Q 022290 257 LKGWSCKFCTLDNSSLSERCLACGEW 282 (299)
Q Consensus 257 ~~~W~C~~Ct~~N~~~~~~C~~Cg~~ 282 (299)
...+.|..|...|++.+..|--||..
T Consensus 17 ~~k~ICrkC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 17 FLKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp CCCEEETTTCCEECTTCSSCTTTCCC
T ss_pred hchhhhccccCcCCcccccccCCCCC
Confidence 45799999999999999999999953
No 138
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=34.39 E-value=46 Score=33.44 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhhcCCCC
Q 022290 48 YEQILDTMLHELCHNEYGP 66 (299)
Q Consensus 48 ~~~i~~v~lHELaH~~~~~ 66 (299)
+..++.+++||++|...++
T Consensus 264 ~~~~~~liaHE~~H~W~g~ 282 (597)
T 4fgm_A 264 YQTFLSLCCHEYFHSWNIK 282 (597)
T ss_dssp HHHHHHHHHHHHHHTTBTT
T ss_pred hhchhhhHhhhhheeeccc
Confidence 5678999999999999884
No 139
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12, complex (elastase inhibitor), acetohydroxamic acid, hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB: 1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A 3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A* 3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...
Probab=34.12 E-value=18 Score=29.82 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhhcCCCCCChh
Q 022290 50 QILDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 50 ~i~~v~lHELaH~~~~~H~~~ 70 (299)
.+..|++|||-|.+--.|+..
T Consensus 107 ~~~~~~~HE~GH~lGl~H~~~ 127 (159)
T 1y93_A 107 NLFLTAVHEIGHSLGLGHSSD 127 (159)
T ss_dssp EHHHHHHHHHHHHTTCCCCSC
T ss_pred hhhhhhhhhhhhhhcCCCCCC
Confidence 378999999999999899765
No 140
>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A
Probab=33.69 E-value=12 Score=35.17 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhhhcC
Q 022290 49 EQILDTMLHELCHNE 63 (299)
Q Consensus 49 ~~i~~v~lHELaH~~ 63 (299)
..-..||||||+|+.
T Consensus 285 ~s~a~tllHE~tH~~ 299 (343)
T 2x3c_A 285 DSRAGTIVHQLSHFN 299 (343)
T ss_dssp TCHHHHHHHHHHHST
T ss_pred CccchhHhhhhhccc
Confidence 357799999999985
No 141
>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A* 1ciz_A* ...
Probab=33.68 E-value=14 Score=30.90 Aligned_cols=21 Identities=24% Similarity=0.214 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhhcCCCCCChh
Q 022290 50 QILDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 50 ~i~~v~lHELaH~~~~~H~~~ 70 (299)
.+..|++|||-|.+--.|+..
T Consensus 112 ~~~~v~~HEiGHaLGL~H~~~ 132 (173)
T 1hy7_A 112 NLFLVAAHEIGHSLGLFHSAN 132 (173)
T ss_dssp EHHHHHHHHHHHHHTBCCCSC
T ss_pred hhhhhHHHHHHHhhcCCCCCC
Confidence 367999999999998888764
No 142
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=33.55 E-value=73 Score=22.17 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=31.5
Q ss_pred CCCCCccCCccccc--cccCCccccccCCCCCCCCCCCCCcccCCcccccCCCCccccccCCCCCCCC
Q 022290 222 DVGQMWQCNMCTLL--NQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGEWRYSNG 287 (299)
Q Consensus 222 ~~~~~W~C~~CT~~--N~~~a~~C~aCgt~rp~~~~~~~~W~C~~Ct~~N~~~~~~C~~Cg~~r~~~~ 287 (299)
.......|+.|.-. +... ..-..|+ ...|..|...-......|.+|...-....
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~-~~~~~C~-----------H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGES-VRQLPCN-----------HLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSC-EEECTTS-----------CEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred cCCCCCCCeeCCccccCCCC-EEEeCCC-----------CeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 34457889999533 2211 1111244 45677777544445578999988766543
No 143
>1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type - matrix metalloproteinase, batimastat, hydroxamate inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo sapiens} SCOP: d.92.1.11
Probab=33.23 E-value=15 Score=30.39 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhhcCCCCCCh
Q 022290 49 EQILDTMLHELCHNEYGPHNA 69 (299)
Q Consensus 49 ~~i~~v~lHELaH~~~~~H~~ 69 (299)
..+..|++|||-|.+--.|+.
T Consensus 115 ~~~~~~~~he~gh~lgl~h~~ 135 (169)
T 1rm8_A 115 NDLFLVAVHELGHALGLEHSN 135 (169)
T ss_dssp EEHHHHHHHHHHHHHTCCCCS
T ss_pred ceeeeehhhhhhhhcCCCCCC
Confidence 457899999999999999974
No 144
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=32.95 E-value=18 Score=28.39 Aligned_cols=49 Identities=24% Similarity=0.371 Sum_probs=39.1
Q ss_pred CCccCCccccccccCCccccccCCCCCCCCCCCCCcccCCcccccCCCCccccccCCCCCCCC
Q 022290 225 QMWQCNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGEWRYSNG 287 (299)
Q Consensus 225 ~~W~C~~CT~~N~~~a~~C~aCgt~rp~~~~~~~~W~C~~Ct~~N~~~~~~C~~Cg~~r~~~~ 287 (299)
+.-.|..|-|.|... ..| . ...-|-.|...+-..+..|..|+.+.+-..
T Consensus 27 G~~nCKsCWf~~k~L-V~C---~----------dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 27 GPQFCKSCWFENKGL-VEC---N----------NHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp CCCCCCSSCSCCSSE-EEC---S----------SCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred CcccChhhccccCCe-eee---c----------chhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 567899999998854 333 2 368899999999999999999999877544
No 145
>1u4g_A Elastase, pseudolysin; , inhibition, peptidase family M4, hydrolase; HET: HPI; 1.40A {Pseudomonas aeruginosa} SCOP: d.92.1.2 PDB: 1ezm_A* 3dbk_A*
Probab=32.22 E-value=15 Score=34.10 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=17.1
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCC
Q 022290 44 DFFPYEQILDTMLHELCHNEYGPH 67 (299)
Q Consensus 44 ~f~p~~~i~~v~lHELaH~~~~~H 67 (299)
.|.|+. -.+|+.|||+|=|.-..
T Consensus 128 ~~~p~~-~lDVv~HE~tHGVt~~~ 150 (301)
T 1u4g_A 128 MFYPLV-SLDVAAHEVSHGFTEQN 150 (301)
T ss_dssp SBSCSC-CHHHHHHHHHHHHHHTT
T ss_pred cccccc-ccceeeeccccceeccc
Confidence 566764 57899999999775444
No 146
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=30.91 E-value=30 Score=24.71 Aligned_cols=28 Identities=36% Similarity=0.627 Sum_probs=19.3
Q ss_pred cccCCcccccCCCCccccccCCCCCCCCCC
Q 022290 260 WSCKFCTLDNSSLSERCLACGEWRYSNGPP 289 (299)
Q Consensus 260 W~C~~Ct~~N~~~~~~C~~Cg~~r~~~~pp 289 (299)
-.|+.|...-- ...|..||.+-.+.-|+
T Consensus 7 r~C~~CgvYTL--k~~CP~CG~~T~~~hPa 34 (60)
T 2apo_B 7 KKCPKCGLYTL--KEICPKCGEKTVIPKPP 34 (60)
T ss_dssp EECTTTCCEES--SSBCSSSCSBCBCCCCC
T ss_pred eeCCCCCCEec--cccCcCCCCcCCCCCCC
Confidence 45777764444 67799999887765553
No 147
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=30.68 E-value=14 Score=38.53 Aligned_cols=24 Identities=17% Similarity=0.551 Sum_probs=20.7
Q ss_pred CCccCCccccccccCCccccccCC
Q 022290 225 QMWQCNMCTLLNQPLALTCEACGT 248 (299)
Q Consensus 225 ~~W~C~~CT~~N~~~a~~C~aCgt 248 (299)
..|.|..|...|+....+|..|+.
T Consensus 10 ~~~~c~yc~~~~~~~~~~c~~~~~ 33 (802)
T 2xzl_A 10 SDNSCAYCGIDSAKCVIKCNSCKK 33 (802)
T ss_dssp --CCCTTTCCCCTTTEEEETTTCC
T ss_pred ChhhCcccCCCCCceEEEeCCCCc
Confidence 579999999999999999999974
No 148
>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex (metalloprotease/inhibitor); HET: BSI; 1.20A {Homo sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A 1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A* 3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A 1a86_A* 1jh1_A* 1a85_A ...
Probab=30.19 E-value=17 Score=30.10 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhhcCCCCCChh
Q 022290 50 QILDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 50 ~i~~v~lHELaH~~~~~H~~~ 70 (299)
.+..|++|||-|.+--.|+..
T Consensus 111 ~~~~v~~HE~GHalGl~H~~~ 131 (163)
T 1i76_A 111 NLFLVAAHEFGHSLGLAHSSD 131 (163)
T ss_dssp BHHHHHHHHHHHHHTBCCCSC
T ss_pred hhhhhhHHHhhhhhcCCCCCC
Confidence 367999999999998888753
No 149
>3nqx_A MCP-02, secreted metalloprotease MCP02; zinc metalloprotease, alpha/beta protein, hydrolase; 1.70A {Pseudoalteromonas SP} PDB: 3nqy_B 3nqz_B
Probab=28.81 E-value=16 Score=34.11 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=18.2
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCC
Q 022290 44 DFFPYEQILDTMLHELCHNEYGPH 67 (299)
Q Consensus 44 ~f~p~~~i~~v~lHELaH~~~~~H 67 (299)
.|.|+. -..|+.|||+|=+.-.+
T Consensus 129 ~~~~~~-slDVv~HE~tHGvt~~~ 151 (306)
T 3nqx_A 129 TFYPLV-SLDVSAHEVSHGFTEQN 151 (306)
T ss_dssp SBSCSC-CHHHHHHHHHHHHHHTT
T ss_pred cccccc-ccchhhhhhccccccCC
Confidence 577875 57899999999886654
No 150
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=28.48 E-value=21 Score=23.69 Aligned_cols=10 Identities=20% Similarity=0.451 Sum_probs=4.8
Q ss_pred CCcccCCccc
Q 022290 258 KGWSCKFCTL 267 (299)
Q Consensus 258 ~~W~C~~Ct~ 267 (299)
+.+.|..|++
T Consensus 23 gelvC~~CG~ 32 (50)
T 1pft_A 23 GEIVCAKCGY 32 (50)
T ss_dssp TEEEESSSCC
T ss_pred CeEECcccCC
Confidence 3455555544
No 151
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=27.96 E-value=17 Score=37.83 Aligned_cols=23 Identities=13% Similarity=0.546 Sum_probs=21.4
Q ss_pred CCccCCccccccccCCccccccC
Q 022290 225 QMWQCNMCTLLNQPLALTCEACG 247 (299)
Q Consensus 225 ~~W~C~~CT~~N~~~a~~C~aCg 247 (299)
..|.|..|...|+....+|..|+
T Consensus 5 ~~~~c~~c~~~~~~~~~~~~~~~ 27 (800)
T 2wjy_A 5 PIHACSYCGIHDPACVVYCNTSK 27 (800)
T ss_dssp CTTSCTTTCCCCGGGEEEETTTT
T ss_pred CchhccccCCCCCCeEEEcCCCC
Confidence 46999999999999999999997
No 152
>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11
Probab=26.99 E-value=27 Score=31.27 Aligned_cols=21 Identities=24% Similarity=0.214 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhhcCCCCCChh
Q 022290 50 QILDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 50 ~i~~v~lHELaH~~~~~H~~~ 70 (299)
.+..|++|||-|.+--.|+..
T Consensus 194 ~l~~va~HEiGHaLGL~Hs~~ 214 (255)
T 1slm_A 194 NLFLVAAHEIGHSLGLFHSAN 214 (255)
T ss_dssp EHHHHHHHHHHHHTTCCCCSC
T ss_pred eehhhhHHHHHHHhcCCCCCC
Confidence 368999999999998888875
No 153
>3ayu_A 72 kDa type IV collagenase; protease, hydrolase-hydrolase inhibitor complex; 2.00A {Homo sapiens} PDB: 1qib_A 1hov_A*
Probab=26.53 E-value=20 Score=29.85 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=17.3
Q ss_pred HHHHHHHHhhhcCCCCCChh
Q 022290 51 ILDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 51 i~~v~lHELaH~~~~~H~~~ 70 (299)
+..|++|||-|.+--.|+..
T Consensus 114 ~~~~~~HE~gH~lGl~H~~~ 133 (167)
T 3ayu_A 114 LFLVAAHAFGHAMGLEHSQD 133 (167)
T ss_dssp HHHHHHHHHHHHTTEECCSC
T ss_pred ceeehhhhhHHhccCCCCCC
Confidence 67999999999998888754
No 154
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=26.26 E-value=23 Score=26.63 Aligned_cols=45 Identities=18% Similarity=0.467 Sum_probs=29.6
Q ss_pred CccCCccccccc---cCCccccccCCC------CCCCC-----CCCCCcccCCcccccC
Q 022290 226 MWQCNMCTLLNQ---PLALTCEACGTQ------RNKSV-----GNLKGWSCKFCTLDNS 270 (299)
Q Consensus 226 ~W~C~~CT~~N~---~~a~~C~aCgt~------rp~~~-----~~~~~W~C~~Ct~~N~ 270 (299)
.=.|.+|.-.+. ...+.|+.|... .|... ...+.|.|..|.....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 356889986642 456789998754 12111 3567899999987654
No 155
>2y6d_A Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapiens} PDB: 2ddy_A* 1mmq_A* 1mmp_A* 1mmr_A* 2y6c_A*
Probab=26.13 E-value=22 Score=29.81 Aligned_cols=21 Identities=33% Similarity=0.332 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhhcCCCCCChh
Q 022290 50 QILDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 50 ~i~~v~lHELaH~~~~~H~~~ 70 (299)
.+..|++|||-|.+--.|+..
T Consensus 114 ~~~~~~~HE~gH~lGl~h~~~ 134 (174)
T 2y6d_A 114 NFLYAATHELGHSLGMGHSSD 134 (174)
T ss_dssp EHHHHHHHHHHHHHTBCCCSC
T ss_pred eeeehhhHHhHhhhcCCCCCC
Confidence 477999999999998888763
No 156
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=25.60 E-value=53 Score=27.96 Aligned_cols=41 Identities=20% Similarity=0.430 Sum_probs=25.6
Q ss_pred cCCccccccccCCccccccCCCC------C-CCCCCCCCcccCCcccccC
Q 022290 228 QCNMCTLLNQPLALTCEACGTQR------N-KSVGNLKGWSCKFCTLDNS 270 (299)
Q Consensus 228 ~C~~CT~~N~~~a~~C~aCgt~r------p-~~~~~~~~W~C~~Ct~~N~ 270 (299)
.|..|.-- ...+.|+.|...- | ....+.+.|.|+.|.....
T Consensus 4 ~C~~C~~~--g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~~ 51 (189)
T 2ro1_A 4 ICRVCQKP--GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 51 (189)
T ss_dssp CBTTTCCC--SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSCC
T ss_pred cCccCCCC--CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCCC
Confidence 36677633 3466788886541 1 1123567899999987654
No 157
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=24.55 E-value=21 Score=29.25 Aligned_cols=12 Identities=17% Similarity=0.681 Sum_probs=8.9
Q ss_pred CCCccCCccccc
Q 022290 224 GQMWQCNMCTLL 235 (299)
Q Consensus 224 ~~~W~C~~CT~~ 235 (299)
...|.|..|.+.
T Consensus 68 p~~~~C~~CG~~ 79 (139)
T 3a43_A 68 EAVFKCRNCNYE 79 (139)
T ss_dssp CCEEEETTTCCE
T ss_pred CCcEECCCCCCE
Confidence 457888888766
No 158
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=24.04 E-value=32 Score=27.00 Aligned_cols=13 Identities=15% Similarity=0.399 Sum_probs=8.9
Q ss_pred CCCccCCcccccc
Q 022290 224 GQMWQCNMCTLLN 236 (299)
Q Consensus 224 ~~~W~C~~CT~~N 236 (299)
...|.|..|...=
T Consensus 71 p~~~~C~~CG~~~ 83 (119)
T 2kdx_A 71 KVELECKDCSHVF 83 (119)
T ss_dssp CCEEECSSSSCEE
T ss_pred cceEEcCCCCCEE
Confidence 4568888887653
No 159
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=23.80 E-value=19 Score=25.40 Aligned_cols=15 Identities=40% Similarity=0.919 Sum_probs=12.8
Q ss_pred CCccCCccccccccC
Q 022290 225 QMWQCNMCTLLNQPL 239 (299)
Q Consensus 225 ~~W~C~~CT~~N~~~ 239 (299)
..|.|+.|...|..-
T Consensus 32 ~~W~C~~C~~~N~~P 46 (59)
T 2yrc_A 32 KLWACNFCYQRNQFP 46 (59)
T ss_dssp TEEECSSSCCEEECC
T ss_pred CEEEcccCCCcCCCC
Confidence 579999999999754
No 160
>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease, astacin, metal- protease; 1.10A {Danio rerio}
Probab=23.45 E-value=26 Score=30.38 Aligned_cols=19 Identities=26% Similarity=0.085 Sum_probs=15.7
Q ss_pred HHHHHHHhhhcCCCCCChh
Q 022290 52 LDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 52 ~~v~lHELaH~~~~~H~~~ 70 (299)
..|++|||.|.+-.-|-..
T Consensus 94 ~g~i~HEl~HaLGf~HEh~ 112 (199)
T 3lqb_A 94 SGIAQHELNHALGFYHEQS 112 (199)
T ss_dssp HHHHHHHHHHHHTCCCGGG
T ss_pred cchHHHHHHHHhccceeee
Confidence 5899999999997777544
No 161
>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative splicing, calcium, chondrogenesis, cleavage on PAIR of basic residues, cytokine; 1.25A {Homo sapiens} SCOP: d.92.1.0 PDB: 3edg_A 3edi_A
Probab=22.81 E-value=25 Score=30.42 Aligned_cols=19 Identities=26% Similarity=0.183 Sum_probs=15.3
Q ss_pred HHHHHHHhhhcCCCCCChh
Q 022290 52 LDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 52 ~~v~lHELaH~~~~~H~~~ 70 (299)
..|++|||.|.+-.-|-..
T Consensus 88 ~g~i~HEl~HalGf~HE~~ 106 (201)
T 3edh_A 88 FGIVVHELGHVVGFWHEHT 106 (201)
T ss_dssp HHHHHHHHHHHHTBCCGGG
T ss_pred cchhHHHHHHHhcchhhhh
Confidence 4899999999987776543
No 162
>1lml_A Leishmanolysin; metalloprotease, glycoprotein; 1.86A {Leishmania major} SCOP: d.92.1.3
Probab=22.66 E-value=32 Score=33.73 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhhhcCCC
Q 022290 48 YEQILDTMLHELCHNEYG 65 (299)
Q Consensus 48 ~~~i~~v~lHELaH~~~~ 65 (299)
.....+|++||++|.+-.
T Consensus 156 ~~~~~~~~~HEi~HaLGF 173 (478)
T 1lml_A 156 DQLVTRVVTHEMAHALGF 173 (478)
T ss_dssp CHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHcc
Confidence 356789999999998854
No 163
>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 4a7b_A* 3tvc_A* 1eub_A* 1xuc_A* 1xud_A* 1xur_A* 2yig_A* 3elm_A* 3i7g_A* 3i7i_A* 3zxh_A* 2ow9_A* 2ozr_A* 3kek_A* 3kej_A* 3kec_A* 2d1n_A* 1fls_A* ...
Probab=22.51 E-value=35 Score=28.55 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhhcCCCCCChh
Q 022290 50 QILDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 50 ~i~~v~lHELaH~~~~~H~~~ 70 (299)
.+..|++|||-|.+--.|+..
T Consensus 112 ~l~~v~~hE~Gh~lGl~h~~~ 132 (168)
T 830c_A 112 NLFLVAAHEFGHSLGLDHSKD 132 (168)
T ss_dssp EHHHHHHHHHHHHTTBCCCSC
T ss_pred chhhhhhhhhcchhcCCCCCC
Confidence 368999999999999999873
No 164
>1c7k_A NCNP, zinc endoprotease; alpha and beta protein, metalloproteinase, hydrolase; 1.00A {Streptomyces caespitosus} SCOP: d.92.1.1 PDB: 1kuh_A
Probab=22.17 E-value=33 Score=28.10 Aligned_cols=21 Identities=19% Similarity=0.042 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhhcCCCCCChh
Q 022290 50 QILDTMLHELCHNEYGPHNAD 70 (299)
Q Consensus 50 ~i~~v~lHELaH~~~~~H~~~ 70 (299)
....|++||+-|.+-.+|.-.
T Consensus 76 ~~~~v~aHE~GH~LGL~~~y~ 96 (132)
T 1c7k_A 76 DSTRVTAHETGHVLGLPDHYQ 96 (132)
T ss_dssp CHHHHHHHHHHHHHTCCCCTT
T ss_pred CCceEEeeeehhccCCcccCC
Confidence 355899999999999888876
No 165
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=21.84 E-value=58 Score=34.12 Aligned_cols=48 Identities=19% Similarity=0.249 Sum_probs=25.7
Q ss_pred CCCcc---CCccccccccCCccccccCCCCCCCCCCCCCcccCCcccccCCCCccccccCC
Q 022290 224 GQMWQ---CNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGE 281 (299)
Q Consensus 224 ~~~W~---C~~CT~~N~~~a~~C~aCgt~rp~~~~~~~~W~C~~Ct~~N~~~~~~C~~Cg~ 281 (299)
-..|. |+.|...+..... +.+.. ..+..|.|..|.... .+|.|..||.
T Consensus 185 ~~~w~~~~~~~c~h~~~~~~~-------~~~~~-~~~~~~~C~~c~~~~--~lw~CL~Cg~ 235 (854)
T 3ihp_A 185 VQAWDGEVRQVSKHAFSLKQL-------DNPAR-IPPCGWKCSKCDMRE--NLWLNLTDGS 235 (854)
T ss_dssp -------CCCBCTTTTTCCCC-------SSCCC-CCSSCCCCSSSCCCS--SEEEETTTCC
T ss_pred HHhhcCccCCCCcCccccccc-------ccccc-CCCCCCcCcCcCCcC--ceEEEecCCC
Confidence 35687 8888877543211 10111 123458888888654 7788888884
No 166
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=21.53 E-value=23 Score=26.26 Aligned_cols=30 Identities=23% Similarity=0.600 Sum_probs=16.2
Q ss_pred cccccCCCCCCCCCCCCCcccCCcccccCCC
Q 022290 242 TCEACGTQRNKSVGNLKGWSCKFCTLDNSSL 272 (299)
Q Consensus 242 ~C~aCgt~rp~~~~~~~~W~C~~Ct~~N~~~ 272 (299)
.|..|+...-.. ...+.|.|..|.+.-...
T Consensus 29 ~C~fCgk~~vkR-~a~GIW~C~~C~~~~AGG 58 (73)
T 1ffk_W 29 KCPVCGFPKLKR-ASTSIWVCGHCGYKIAGG 58 (73)
T ss_pred cCCCCCCceeEE-EEeEEEECCCCCcEEECC
Confidence 455555432211 123578888888765444
No 167
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=21.29 E-value=1.2e+02 Score=22.57 Aligned_cols=41 Identities=20% Similarity=0.476 Sum_probs=21.4
Q ss_pred ccccccCCCCCCCCCCCCCcccCCcccccCC--------CCccccccCC
Q 022290 241 LTCEACGTQRNKSVGNLKGWSCKFCTLDNSS--------LSERCLACGE 281 (299)
Q Consensus 241 ~~C~aCgt~rp~~~~~~~~W~C~~Ct~~N~~--------~~~~C~~Cg~ 281 (299)
..|..|+...-.+..=+..|.|-.|+-.... ....|-.||.
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~~~c~~p~~~~~CYnCG~ 54 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGG 54 (83)
T ss_dssp -CCSSSCCSSSCGGGCGGGTCCCCBC-------------CCCBCSSSSC
T ss_pred CCCCCCCCCCCccccCCCcccccccccCCcccccccCCCCCCeecccCC
Confidence 4566676554433222346788777754432 3467888877
No 168
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.58 E-value=23 Score=26.95 Aligned_cols=30 Identities=27% Similarity=0.584 Sum_probs=18.9
Q ss_pred ccccccCCCCCCCCCCCCCcccCCcccccCC
Q 022290 241 LTCEACGTQRNKSVGNLKGWSCKFCTLDNSS 271 (299)
Q Consensus 241 ~~C~aCgt~rp~~~~~~~~W~C~~Ct~~N~~ 271 (299)
..|..|+..+-.. ...+.|.|..|.+.--.
T Consensus 36 y~CpfCGk~~vkR-~a~GIW~C~kCg~~~AG 65 (83)
T 3j21_i 36 HTCPVCGRKAVKR-ISTGIWQCQKCGATFAG 65 (83)
T ss_dssp BCCSSSCSSCEEE-EETTEEEETTTCCEEEC
T ss_pred cCCCCCCCceeEe-cCcCeEEcCCCCCEEeC
Confidence 4577777653222 23568999999865443
No 169
>3ma2_D Matrix metalloproteinase-14; protein - protein complex, cleavage on PAIR of basic residue disulfide bond, membrane, metal-binding; 2.05A {Homo sapiens} SCOP: d.92.1.11 PDB: 1bqq_M 1buv_M
Probab=20.56 E-value=45 Score=28.33 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhhcCCCCCCh
Q 022290 49 EQILDTMLHELCHNEYGPHNA 69 (299)
Q Consensus 49 ~~i~~v~lHELaH~~~~~H~~ 69 (299)
..+..|++||+-|.+--.|+.
T Consensus 120 ~~l~~v~~hE~Gh~lGl~hs~ 140 (181)
T 3ma2_D 120 NDIFLVAVHELGHALGLEHSS 140 (181)
T ss_dssp EEHHHHHHHHHHHHTTCCCCS
T ss_pred ceeeeeehhhccccccCCcCC
Confidence 356789999999999999985
No 170
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=20.55 E-value=30 Score=26.78 Aligned_cols=31 Identities=29% Similarity=0.531 Sum_probs=19.5
Q ss_pred ccccccCCCCCCCCCCCCCcccCCcccccCCC
Q 022290 241 LTCEACGTQRNKSVGNLKGWSCKFCTLDNSSL 272 (299)
Q Consensus 241 ~~C~aCgt~rp~~~~~~~~W~C~~Ct~~N~~~ 272 (299)
..|..|+...-.. ...+.|.|..|.+.--..
T Consensus 37 y~CpfCgk~~vkR-~a~GIW~C~~Cg~~~AGG 67 (92)
T 3iz5_m 37 YFCEFCGKFAVKR-KAVGIWGCKDCGKVKAGG 67 (92)
T ss_dssp BCCTTTCSSCBEE-EETTEEECSSSCCEEECC
T ss_pred ccCcccCCCeeEe-cCcceEEcCCCCCEEeCC
Confidence 3577777654322 235789999998754443
No 171
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=20.38 E-value=42 Score=24.00 Aligned_cols=27 Identities=30% Similarity=0.538 Sum_probs=18.2
Q ss_pred cccCCcccccCCCCccccccCCCCCCCCC
Q 022290 260 WSCKFCTLDNSSLSERCLACGEWRYSNGP 288 (299)
Q Consensus 260 W~C~~Ct~~N~~~~~~C~~Cg~~r~~~~p 288 (299)
-.|+.|...-- ...|..||.+-.+.-|
T Consensus 6 r~C~~Cg~YTL--k~~CP~CG~~t~~ahP 32 (60)
T 2aus_D 6 RKCPKCGRYTL--KETCPVCGEKTKVAHP 32 (60)
T ss_dssp EECTTTCCEES--SSBCTTTCSBCEESSC
T ss_pred eECCCCCCEEc--cccCcCCCCccCCCCC
Confidence 45777765444 6678899987765444
No 172
>3cmn_A Putative hydrolase; PSI-II, NYSGXRC, apoenzyme, helical protein, 10492M, structural genomics, protein structure initiative; 2.25A {Chloroflexus aurantiacus j-10-fl} SCOP: d.92.1.16
Probab=20.34 E-value=38 Score=32.36 Aligned_cols=37 Identities=16% Similarity=-0.013 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHH
Q 022290 46 FPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKEC 82 (299)
Q Consensus 46 ~p~~~i~~v~lHELaH~~~~~H~~~F~~l~~~l~~e~ 82 (299)
-|-+...|+-+||.+|-...-|-.---..+...+.+|
T Consensus 173 ~~~d~rlwvalhE~aH~rlF~avPWLr~~l~~~v~~~ 209 (372)
T 3cmn_A 173 SDEDFRLWITLHEMTHAFEFEAYPWVRTYFRELLEQN 209 (372)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHH
Confidence 4556778999999999998888876555555555554
No 173
>4dv8_A Lethal factor; endopeptidase, zinc dependent, hydrolase; HET: 0LX; 1.63A {Bacillus anthracis} PDB: 1yqy_A* 2l0r_A
Probab=20.20 E-value=33 Score=33.99 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=11.2
Q ss_pred HHHHHHHhhhcCC
Q 022290 52 LDTMLHELCHNEY 64 (299)
Q Consensus 52 ~~v~lHELaH~~~ 64 (299)
..|++||++|.+-
T Consensus 431 s~tlLHEfGHaVD 443 (526)
T 4dv8_A 431 SEGFIHEFGHAVD 443 (526)
T ss_dssp HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH
Confidence 5899999999874
No 174
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.09 E-value=2.9e+02 Score=20.88 Aligned_cols=46 Identities=15% Similarity=0.488 Sum_probs=26.3
Q ss_pred CCCccCCccccccccCCccccc--cCCC-CCC-----CCCCCCCcccCCcccccC
Q 022290 224 GQMWQCNMCTLLNQPLALTCEA--CGTQ-RNK-----SVGNLKGWSCKFCTLDNS 270 (299)
Q Consensus 224 ~~~W~C~~CT~~N~~~a~~C~a--Cgt~-rp~-----~~~~~~~W~C~~Ct~~N~ 270 (299)
.....| .|.-.....-+.|+. |... -.. .....+.|.|+.|...+.
T Consensus 34 ~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCCS
T ss_pred CCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcCC
Confidence 456778 787654455677888 5421 000 012346788888876544
Done!