BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022292
(299 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 125 NSKGLEIFCKSWMPKLGDQIKGVLFFCHGYGDTCTFFFEGIARYIAASGYGVYALDHPGF 184
N+ G +FC+ W P K ++F HG G+ + +E +AR + V+A DH G
Sbjct: 24 NADGQYLFCRYWAPT--GTPKALIFVSHGAGEH-SGRYEELARMLMGLDLLVFAHDHVGH 80
Query: 185 GLSEGLHGYVPSFDALVDNVIEIYTKIKGRPELQGLPCFILGQSMGGAVTIKAHLKEPRA 244
G SEG V F V +V++ ++ + GLP F+LG SMGGA+ I + P
Sbjct: 81 GQSEGERMVVSDFHVFVRDVLQHVDSMQK--DYPGLPVFLLGHSMGGAIAILTAAERPGH 138
Query: 245 WDGVILVAPMC 255
+ G++L++P+
Sbjct: 139 FAGMVLISPLV 149
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 125 NSKGLEIFCKSWMPKLGDQIKGVLFFCHGYGDTCTFFFEGIARYIAASGYGVYALDHPGF 184
N+ G +FC+ W P K ++F HG G+ + +E +AR + V+A DH G
Sbjct: 41 NADGQYLFCRYWKPT--GTPKALIFVSHGAGEH-SGRYEELARMLMGLDLLVFAHDHVGH 97
Query: 185 GLSEGLHGYVPSFDALVDNVIEIYTKIKGRPELQGLPCFILGQSMGGAVTIKAHLKEPRA 244
G SEG V F V +V++ ++ + GLP F+LG SMGGA+ I + P
Sbjct: 98 GQSEGERMVVSDFHVFVRDVLQHVDSMQK--DYPGLPVFLLGHSMGGAIAILTAAERPGH 155
Query: 245 WDGVILVAPMC 255
+ G++L++P+
Sbjct: 156 FAGMVLISPLV 166
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 125 NSKGLEIFCKSWMPKLGDQIKGVLFFCHGYGDTCTFFFEGIARYIAASGYGVYALDHPGF 184
N+ G +FC+ W P K ++F HG G+ + +E +AR + V+A DH G
Sbjct: 42 NADGQYLFCRYWKPT--GTPKALIFVSHGAGEH-SGRYEELARMLMGLDLLVFAHDHVGH 98
Query: 185 GLSEGLHGYVPSFDALVDNVIEIYTKIKGRPELQGLPCFILGQSMGGAVTIKAHLKEPRA 244
G SEG V F V +V++ ++ + GLP F+LG SMGGA+ I + P
Sbjct: 99 GQSEGERMVVSDFHVFVRDVLQHVDSMQK--DYPGLPVFLLGHSMGGAIAILTAAERPGH 156
Query: 245 WDGVILVAPMC 255
+ G++L++P+
Sbjct: 157 FAGMVLISPLV 167
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 7/132 (5%)
Query: 125 NSKGLEIFCKSWMPKLGDQIKGVLFFCHGYGDTCTFFFEGIARYIAASGYGVYALDHPGF 184
N+ G +FC+ W P K ++F HG G+ + +E +AR + V+A DH G
Sbjct: 41 NADGQYLFCRYWKPT--GTPKALIFVSHGAGEH-SGRYEELARXLXGLDLLVFAHDHVGH 97
Query: 185 GLSEGLHGYVPSFDALVDNVIE-IYTKIKGRPELQGLPCFILGQSMGGAVTIKAHLKEPR 243
G SEG V F V +V++ + + K P GLP F+LG S GGA+ I + P
Sbjct: 98 GQSEGERXVVSDFHVFVRDVLQHVDSXQKDYP---GLPVFLLGHSXGGAIAILTAAERPG 154
Query: 244 AWDGVILVAPMC 255
+ G +L++P+
Sbjct: 155 HFAGXVLISPLV 166
>pdb|3BDI|A Chain A, Crystal Structure Of Predicted Cib-Like Hydrolase
(Np_393672.1) From Thermoplasma Acidophilum At 1.45 A
Resolution
Length = 207
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 173 GYGVYALDHPGFGLSEGLHGYVPSFDAL--VDNVIEIYTKIKGRPELQGLPCFILGQSMG 230
GY VYA D+PGFG S Y L I Y K G I G S G
Sbjct: 56 GYNVYAPDYPGFGRSASSEKYGIDRGDLKHAAEFIRDYLKANGVAR-----SVIXGASXG 110
Query: 231 GAVTIKAHLKEPRAWDGVILVAP 253
G I L+ P DG+I VAP
Sbjct: 111 GGXVIXTTLQYPDIVDGIIAVAP 133
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Query: 147 VLFFCHGYGDTCTFFFEGIARYIAASGYGVYALDHPGFGLSEGLHGYVPSFDALVDNVIE 206
+ HG + C +E +A +GY V A+D GF S Y SF L N
Sbjct: 48 TILLXHG-KNFCAGTWERTIDVLADAGYRVIAVDQVGFCKSSKPAHYQYSFQQLAANTHA 106
Query: 207 IYTKIKGRPELQGLP-CFILGQSMGGAVTIKAHLKEPRAWDGVILVAPM 254
+ ++ G+ ++G S GG + + L PR + ++LV P+
Sbjct: 107 LLERL-------GVARASVIGHSXGGXLATRYALLYPRQVERLVLVNPI 148
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 174 YGVYALDHPGFGLSEGLHGYVPSFDALVDNVIEIYTKIKGRPELQGLPCFILGQSMGGAV 233
Y V A D GFG ++ Y S D+ VD++I I + E++ I+G S GG +
Sbjct: 55 YRVIAPDMVGFGFTDRPENYNYSKDSWVDHIIGIMDAL----EIE--KAHIVGNSFGGGL 108
Query: 234 TIKAHLKEPRAWDGVILVAPM 254
I L+ D ++L+ +
Sbjct: 109 AIATALRYSERVDRMVLMGAV 129
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 128 GLEIFCKSWMPKLGDQIKGVLFFCHGYGDTCTFFFEGIARYIAASGYGVYALDHPGFGLS 187
G +I SW G V+ HG + + E +A +AA GY V A D G G S
Sbjct: 13 GNQICLCSW----GSPEHPVVLCIHGILEQGLAWQE-VALPLAAQGYRVVAPDLFGHGRS 67
Query: 188 EGLHGYVP----SFDALVDNVIEIYTKIKGRPELQGLPCFILGQSMGGAVTIKAHLKEPR 243
L +F A +D VI+ EL P ++G SMG + P+
Sbjct: 68 SHLEMVTSYSSLTFLAQIDRVIQ---------ELPDQPLLLVGHSMGAMLATAIASVRPK 118
Query: 244 AWDGVILV 251
+ILV
Sbjct: 119 KIKELILV 126
>pdb|3CEA|A Chain A, Crystal Structure Of Myo-Inositol 2-Dehydrogenase
(Np_786804.1) From Lactobacillus Plantarum At 2.40 A
Resolution
pdb|3CEA|B Chain B, Crystal Structure Of Myo-Inositol 2-Dehydrogenase
(Np_786804.1) From Lactobacillus Plantarum At 2.40 A
Resolution
pdb|3CEA|C Chain C, Crystal Structure Of Myo-Inositol 2-Dehydrogenase
(Np_786804.1) From Lactobacillus Plantarum At 2.40 A
Resolution
pdb|3CEA|D Chain D, Crystal Structure Of Myo-Inositol 2-Dehydrogenase
(Np_786804.1) From Lactobacillus Plantarum At 2.40 A
Resolution
Length = 346
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 19/104 (18%)
Query: 40 PKRAVLVPRGRRSSTHHRRLIVRAEINSPIEGVSDDLNLIA-----SRNLDFAYTRRKVR 94
P RA ++ GR H R L+ + I+GV L+A S L++A V
Sbjct: 8 PLRAAIIGLGRLGERHARHLV------NKIQGVK----LVAACALDSNQLEWAKNELGVE 57
Query: 95 SAFTQVQLQLD----HCLFTMAPSGIRTQEWYERNSKGLEIFCK 134
+ +T + +D +F +AP+ + + GL +FC+
Sbjct: 58 TTYTNYKDXIDTENIDAIFIVAPTPFHPEXTIYAXNAGLNVFCE 101
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 174 YGVYALDHPGFGLSEGLHGYVPSFDALVDNVIEIYTKIKGRPELQGLPCFILGQSMGGAV 233
Y V A D GFG ++ Y S D+ VD++I I + E++ I+G + GG +
Sbjct: 55 YRVIAPDMVGFGFTDRPENYNYSKDSWVDHIIGIMDAL----EIE--KAHIVGNAFGGGL 108
Query: 234 TIKAHLKEPRAWDGVILVA 252
I L+ D ++L+
Sbjct: 109 AIATALRYSERVDRMVLMG 127
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 8/106 (7%)
Query: 171 ASGYGVYALDHPGFGLSEGLHGYVPSFDALVDNVIEIYTKIKGRPELQGLP-CFILGQSM 229
A + V A D GFG SE Y + V +E +I G G+ I+G SM
Sbjct: 56 AENFFVVAPDLIGFGQSEYPETYPGHIMSWVGMRVE---QILGLMNHFGIEKSHIVGNSM 112
Query: 230 GGAVTIKAHLKEPRAWDGVILV----APMCKVSSSLFLLQIIFHKP 271
GGAVT++ ++ P +D V L+ APM L L + P
Sbjct: 113 GGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELARLLAFYADP 158
>pdb|2Y6U|A Chain A, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form Ii)
pdb|2Y6V|A Chain A, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
pdb|2Y6V|B Chain B, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
pdb|2Y6V|C Chain C, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
Length = 398
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 22/124 (17%)
Query: 148 LFFCHGYGDTCTFFFEGIARYIAASGYGVYALDHPGFGLSEGLHGYVPSFDALVDN---- 203
L F HG G + + + R +AA G YA+D + + HG D+ V N
Sbjct: 55 LVFLHGSGMSKVVWEYYLPRLVAADAEGNYAIDKVLL-IDQVNHG-----DSAVRNRGRL 108
Query: 204 ------------VIEIYTKIKGRPELQGLPCFILGQSMGGAVTIKAHLKEPRAWDGVILV 251
V++I T G + ++G SMGG + + +P + +IL+
Sbjct: 109 GTNFNWIDGARDVLKIATXELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLFHLLILI 168
Query: 252 APMC 255
P+
Sbjct: 169 EPVV 172
>pdb|1YS4|A Chain A, Structure Of Aspartate-Semialdehyde Dehydrogenase From
Methanococcus Jannaschii
pdb|1YS4|B Chain B, Structure Of Aspartate-Semialdehyde Dehydrogenase From
Methanococcus Jannaschii
Length = 354
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 240 KEPRAWDGVILVAPMCKVSSSLFLLQIIFHKPLFDYFLFQIFAILIMWLLS 290
+E R WDG I+ P C + +I KP+ D F + I +S
Sbjct: 142 REKRGWDGAIITNPNCST-----ICAVITLKPIXDKFGLEAVFIATXQAVS 187
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 14/123 (11%)
Query: 122 YERNSKGLEIFCKSWMPKLGDQIKGVLFFCHGYGDTCTFFFEGIARYIAASGYGVYALDH 181
Y G++IF K W P+ V+ F HG+ ++ + A GY V A D
Sbjct: 3 YVTTKDGVQIFYKDWGPRDAP----VIHFHHGW-PLSADDWDAQLLFFLAHGYRVVAHDR 57
Query: 182 PGFGLSEGL-HGYVPSFDALVDNVIEIYTKIKGRPELQGLPCFILGQSMGGAVTIKAHLK 240
G G S + G+ D D+V + + +QG +G S GG ++ +
Sbjct: 58 RGHGRSSQVWDGH--DMDHYADDVAAVVAHLG----IQG--AVHVGHSTGGGEVVRYMAR 109
Query: 241 EPR 243
P
Sbjct: 110 HPE 112
>pdb|1IMJ|A Chain A, Crystal Structure Of The Human Ccg1/tafii250-interacting
Factor B (cib)
Length = 210
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 9/102 (8%)
Query: 127 KGLEIFCKSWMPKLGDQIKGVLFFCHGYG-DTCTFFFEGIARYIAASGYGVYALDHPGFG 185
+G +F + +P G Q + + HG + T+ G +A +GY A+D PG G
Sbjct: 15 QGQALFFREALPGSG-QARFSVLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGLG 73
Query: 186 LSEGLHGYVP-------SFDALVDNVIEIYTKIKGRPELQGL 220
S+ P SF A V + +E+ + P L G+
Sbjct: 74 HSKEAAAPAPIGELAPGSFLAAVVDALELGPPVVISPSLSGM 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.142 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,187,121
Number of Sequences: 62578
Number of extensions: 385175
Number of successful extensions: 1000
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 980
Number of HSP's gapped (non-prelim): 20
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)