BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022295
(299 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A26|A Chain A, The Crystal Structure Of Leishmania Major N5,N10-
Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE
pdb|4A26|B Chain B, The Crystal Structure Of Leishmania Major N5,N10-
Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE
Length = 300
Score = 289 bits (740), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 155/289 (53%), Positives = 194/289 (67%), Gaps = 3/289 (1%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYG-KVPGLAVVIVGGRKDSQSYVSMKRKACAEV 67
A IIDGKA+A IRSE+ ++V L E YG +VPGLA +IVG R DS+ YV +K KA AEV
Sbjct: 6 AQIIDGKAIAAAIRSELKDKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAEV 65
Query: 68 GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVD 127
G+ SF+++LPE +S+ L V +LN P+ HGI+VQLPLPKH+NE + + +I KD D
Sbjct: 66 GMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPHKDAD 125
Query: 128 GFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLL 187
P+N+G L KGR+P F PCT KG + LLKR G+ + GKRAVV+GRSNIVG PV+ LL
Sbjct: 126 ALLPVNVGLLHYKGREPPFTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALL 185
Query: 188 LKADATVTIVHSHTTDPESI--VREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD 245
+K +ATVTIVHS T+ + I +R ADIVIAA GQ +KG WIK GAAV+DVGT V D
Sbjct: 186 MKENATVTIVHSGTSTEDMIDYLRTADIVIAAMGQPGYVKGEWIKEGAAVVDVGTTPVPD 245
Query: 246 STKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXXLLRNTLDGAK 294
++K GYRLVGDV F EA LL NTL+ K
Sbjct: 246 PSRKDGYRLVGDVCFEEAAARAAWISPVPGGVGPMTIAMLLENTLEAFK 294
>pdb|1A4I|A Chain A, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE
pdb|1A4I|B Chain B, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE
Length = 301
Score = 234 bits (597), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 130/293 (44%), Positives = 178/293 (60%), Gaps = 3/293 (1%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEV 67
A I++GK ++ IR+ + +V L E+ G P LA++ VG R DS Y+++K KA E+
Sbjct: 4 AEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEI 63
Query: 68 GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPL--PKHINEEKVLGEISLEKD 125
GIK+ I LP +E+E++ + LN VHG LVQLPL IN E+V+ I+ EKD
Sbjct: 64 GIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKD 123
Query: 126 VDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSL 185
VDG +N G+LA + F+PCTPKGCLEL+K +GV I G+ AVVVGRS IVG P+
Sbjct: 124 VDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHD 183
Query: 186 LLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD 245
LLL +ATVT HS T + V + DI++ A GQ M+KG WIKPGA VID G N V D
Sbjct: 184 LLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVPD 243
Query: 246 STKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXXLLRNTLDGAKRVIE 298
K +G ++VGDV + EA + L+++T++ AKR +E
Sbjct: 244 DKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRFLE 296
>pdb|1DIA|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly249543
pdb|1DIA|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly249543
pdb|1DIB|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly345899
pdb|1DIB|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly345899
pdb|1DIG|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly374571
pdb|1DIG|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly374571
Length = 306
Score = 234 bits (597), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 130/293 (44%), Positives = 178/293 (60%), Gaps = 3/293 (1%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEV 67
A I++GK ++ IR+ + +V L E+ G P LA++ VG R DS Y+++K KA E+
Sbjct: 4 AEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEI 63
Query: 68 GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPL--PKHINEEKVLGEISLEKD 125
GIK+ I LP +E+E++ + LN VHG LVQLPL IN E+V+ I+ EKD
Sbjct: 64 GIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKD 123
Query: 126 VDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSL 185
VDG +N G+LA + F+PCTPKGCLEL+K +GV I G+ AVVVGRS IVG P+
Sbjct: 124 VDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHD 183
Query: 186 LLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD 245
LLL +ATVT HS T + V + DI++ A GQ M+KG WIKPGA VID G N V D
Sbjct: 184 LLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVPD 243
Query: 246 STKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXXLLRNTLDGAKRVIE 298
K +G ++VGDV + EA + L+++T++ AKR +E
Sbjct: 244 DKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRFLE 296
>pdb|4A5O|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
Length = 286
Score = 228 bits (581), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 130/288 (45%), Positives = 172/288 (59%), Gaps = 8/288 (2%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
A +IDGKA+A +R +IA+ V ++ +VPGLAV++VG SQ YV+ KRK C EVG
Sbjct: 5 AQLIDGKAIAANLRQQIAQRVTERRQQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEVG 64
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
S DLP + S+ +L++ + LN P + GILVQLPLP H++ +L I +KDVDG
Sbjct: 65 FLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPDKDVDG 124
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
FHP NIG+LA R PL PCTPKG + LL +G + G AVVVG SNIVG P++L LL
Sbjct: 125 FHPYNIGRLAQ--RMPLLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELL 182
Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
TVT+ H T D V AD+V+ AAG+ ++KG WIK GA VIDVG N +
Sbjct: 183 LGGCTVTVTHRFTRDLADHVSRADLVVVAAGKPGLVKGEWIKEGAIVIDVGIN------R 236
Query: 249 KSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXXLLRNTLDGAKRV 296
++ RLVGDV++ A + LL NTL A+ +
Sbjct: 237 QADGRLVGDVEYEVAAQRASWITPVPGGVGPMTRACLLENTLHAAEHL 284
>pdb|1B0A|A Chain A, 5,10, Methylene-Tetrahydropholate
DehydrogenaseCYCLOHYDROLASE FROM E COLI
Length = 288
Score = 223 bits (569), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 129/282 (45%), Positives = 164/282 (58%), Gaps = 8/282 (2%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
A IIDGK +AQ +RSE+A++V+ + PGLAVV+VG SQ YV+ KRKAC EVG
Sbjct: 3 AKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVG 62
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
S DLPE SEAEL+ + LN + GILVQLPLP I+ KVL I +KDVDG
Sbjct: 63 FVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDG 122
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
FHP N+G+L R P PCTP+G + LL+R + G AVV+G SNIVG P+S+ LL
Sbjct: 123 FHPYNVGRLCQ--RAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELL 180
Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
A T T+ H T + V AD++I A G+ I G WIK GA VIDVG N +++
Sbjct: 181 LAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENG-- 238
Query: 249 KSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXXLLRNTL 290
++VGDV F +A K L+ NTL
Sbjct: 239 ----KVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTL 276
>pdb|3L07|A Chain A, Methylenetetrahydrofolate
DehydrogenaseMETHENYLTETRAHYDROFOLATE Cyclohydrolase,
Putative Bifunctional Protein Fold From Francisella
Tularensis.
pdb|3L07|B Chain B, Methylenetetrahydrofolate
DehydrogenaseMETHENYLTETRAHYDROFOLATE Cyclohydrolase,
Putative Bifunctional Protein Fold From Francisella
Tularensis
Length = 285
Score = 216 bits (551), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 117/250 (46%), Positives = 157/250 (62%), Gaps = 8/250 (3%)
Query: 11 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70
+IDGK++++ ++ +A +V+ P L +IVG S++YV+ K KACA+VGI
Sbjct: 6 LIDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGID 65
Query: 71 SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130
S I LPE +E+EL+ + +LN VH ILVQLPLP HIN+ V+ I EKDVDGFH
Sbjct: 66 SQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFH 125
Query: 131 PLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKA 190
P N+G+L ++ + L CTPKG + +L+ G+ +G AVVVG SN+VG PVS LLL A
Sbjct: 126 PTNVGRLQLRDKKCLE-SCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNA 184
Query: 191 DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKS 250
ATVT H TTD +S +ADI+I A G+ I +K GA VIDVG N VD
Sbjct: 185 KATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVDG----- 239
Query: 251 GYRLVGDVDF 260
++VGDVDF
Sbjct: 240 --KIVGDVDF 247
>pdb|3P2O|A Chain A, Crystal Structure Of Fold Bifunctional Protein From
Campylobacter Jejuni
pdb|3P2O|B Chain B, Crystal Structure Of Fold Bifunctional Protein From
Campylobacter Jejuni
Length = 285
Score = 208 bits (529), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 122/286 (42%), Positives = 169/286 (59%), Gaps = 8/286 (2%)
Query: 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGI 69
T++DGKA++ I+ E+ E+ + L K G LAV++VG SQ+YV K KAC E GI
Sbjct: 5 TLLDGKALSAKIKEELKEKNQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEECGI 63
Query: 70 KSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGF 129
KS L E +++ EL++ ++ LN VHGILVQLPLP HI ++ +L I KDVDGF
Sbjct: 64 KSLVYHLNENITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGF 123
Query: 130 HPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK 189
HP+N+G L + G + FLPCTP G +LLK + ++GK AV++G SNIVG P + LL
Sbjct: 124 HPINVGYLNL-GLESGFLPCTPLGVXKLLKAYEIDLEGKDAVIIGASNIVGRPXATXLLN 182
Query: 190 ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK 249
A ATV++ H T D R+AD++I AAG +++ +K G V+DVG N ++
Sbjct: 183 AGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDXVKEGVIVVDVGINRLESG--- 239
Query: 250 SGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXXLLRNTLDGAKR 295
++VGDVDF E K LL NT+ AK
Sbjct: 240 ---KIVGDVDFEEVSKKSSYITPVPGGVGPXTIAXLLENTVKSAKN 282
>pdb|4B4U|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor
pdb|4B4U|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor
pdb|4B4V|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold) Complexed With Nadp Cofactor And Inhibitor
Ly354899
pdb|4B4V|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold) Complexed With Nadp Cofactor And Inhibitor
Ly354899
pdb|4B4W|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor And An Inhibitor
pdb|4B4W|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor And An Inhibitor
Length = 303
Score = 198 bits (504), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/236 (42%), Positives = 151/236 (63%), Gaps = 2/236 (0%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
A ++DG+A+A+ I + V L K G+ P LA ++VG S +YV MK AC VG
Sbjct: 23 ALVLDGRALAKQIEENLLVRVEALKAKTGRTPILATILVGDDGASATYVRMKGNACRRVG 82
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
+ S I+LP++ + +L++++ +LN PDVHGIL+Q P+P I+E ISL KDVDG
Sbjct: 83 MDSLKIELPQETTTEQLLAEIEKLNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDG 142
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
L G++AM + + TP G + +LK + + I GK AVVVGRS I+G P++++LL
Sbjct: 143 VTCLGFGRMAMG--EAAYGSATPAGIMTILKENNIEIAGKHAVVVGRSAILGKPMAMMLL 200
Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVD 244
+A+ATVTI HS T + +V++ADI++ A G+A +I+ WIK GA V+D G + D
Sbjct: 201 QANATVTICHSRTQNLPELVKQADIIVGAVGKAELIQKDWIKQGAVVVDAGFHPRD 256
>pdb|2C2X|A Chain A, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
pdb|2C2X|B Chain B, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
pdb|2C2Y|A Chain A, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
Length = 281
Score = 198 bits (504), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 110/252 (43%), Positives = 150/252 (59%), Gaps = 12/252 (4%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
A ++DGKA I ++ + V L + G+ PGL ++VG SQ+YV K CA+VG
Sbjct: 3 AIMLDGKATRDEIFGDLKQRVAAL-DAAGRTPGLGTILVGDDPGSQAYVRGKHADCAKVG 61
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
I S DLP +S A L + ELN PD G +VQLPLPKH++E L + KD DG
Sbjct: 62 ITSIRRDLPADISTATLNETIDELNANPDCTGYIVQLPLPKHLDENAALERVDPAKDADG 121
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
HP N+G+L + P LPCTP+G + LL+R ++I G VV+GR VG P+ LLL
Sbjct: 122 LHPTNLGRLVLG--TPAPLPCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLT 179
Query: 189 K--ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDS 246
+ +ATVT+ H+ T D ++ R+ADIV+AA G A ++ ++PGAAVIDVG + DD
Sbjct: 180 RRSENATVTLCHTGTRDLPALTRQADIVVAAVGVAHLLTADMVRPGAAVIDVGVSRTDDG 239
Query: 247 TKKSGYRLVGDV 258
LVGDV
Sbjct: 240 -------LVGDV 244
>pdb|3NGL|A Chain A, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGL|C Chain C, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGX|A Chain A, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGX|B Chain B, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
Length = 276
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 131/245 (53%), Gaps = 12/245 (4%)
Query: 18 AQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP 77
+ I + AE + + E+ G P L ++ +G + + Y K + ++GI + D++
Sbjct: 6 GEEIAEKKAENLHGIIERSGLEPSLKLIQIGDNEAASIYARAKIRRGKKIGI-AVDLEKY 64
Query: 78 EQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKL 137
+ +S +L+ ++ +L P ++GI+++ PLPK + +++ I KDVD P N G +
Sbjct: 65 DDISMKDLLKRIDDLAKDPQINGIMIENPLPKGFDYYEIVRNIPYYKDVDALSPYNQGLI 124
Query: 138 AMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIV 197
A+ +P TP+ ++++ G +V RS +VG P+S++LL + TV++
Sbjct: 125 ALNRE--FLVPATPRAVIDIMDYYGY--HENTVTIVNRSPVVGRPLSMMLLNRNYTVSVC 180
Query: 198 HSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGD 257
HS T D S+ R + IV+ A G+ + + PG+ VIDVG N V+D ++VGD
Sbjct: 181 HSKTKDIGSMTRSSKIVVVAVGRPGFLNREMVTPGSVVIDVGINYVND-------KVVGD 233
Query: 258 VDFHE 262
+F +
Sbjct: 234 ANFED 238
>pdb|1EDZ|A Chain A, Structure Of The Nad-Dependent 5,10-
Methylenetetrahydrofolate Dehydrogenase From
Saccharomyces Cerevisiae
pdb|1EE9|A Chain A, Crystal Structure Of The Nad-Dependent 5,10-
Methylenetetrahydrofolate Dehydrogenase From
Saccharomyces Cerevisiae Complexed With Nad
Length = 320
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 21/205 (10%)
Query: 10 TIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
TI+ K VA+T +EI V + + G+ P L + ++ Y + +K +G
Sbjct: 7 TILASK-VAETFNTEIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESMG 65
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
+ +D+ + E E + + N V+GI+V P+ + ++ + + EKDV+G
Sbjct: 66 FR-YDLRVIEDKDFLE--EAIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKDVEG 122
Query: 129 FHPL-------NIGKLAMKGRDPLFLPCTPKGC---LELLK------RSGVTIKGKRAVV 172
+ + N+ L + R LPCTP LE LK G + GK+ +V
Sbjct: 123 LNHVYYQNLYHNVRYLDKENRLKSILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIV 182
Query: 173 VGRSNIVGLPVSLLLLKADATVTIV 197
+ RS IVG P++ LL ATV V
Sbjct: 183 INRSEIVGRPLAALLANDGATVYSV 207
>pdb|2YZ7|A Chain A, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|B Chain B, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|C Chain C, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|D Chain D, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|E Chain E, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|F Chain F, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|G Chain G, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|H Chain H, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|3VDR|A Chain A, Crystal Structure Of D-3-Hydroxybutyrate Dehydrogenase,
Prepared In The Presence Of The Substrate
D-3-Hydroxybutyrate And Nad(+)
pdb|3VDR|B Chain B, Crystal Structure Of D-3-Hydroxybutyrate Dehydrogenase,
Prepared In The Presence Of The Substrate
D-3-Hydroxybutyrate And Nad(+)
pdb|3VDR|C Chain C, Crystal Structure Of D-3-Hydroxybutyrate Dehydrogenase,
Prepared In The Presence Of The Substrate
D-3-Hydroxybutyrate And Nad(+)
pdb|3VDR|D Chain D, Crystal Structure Of D-3-Hydroxybutyrate Dehydrogenase,
Prepared In The Presence Of The Substrate
D-3-Hydroxybutyrate And Nad(+)
pdb|3VDQ|A Chain A, Crystal Structure Of Alcaligenes Faecalis
D-3-Hydroxybutyrate Dehydrogenase In Complex With Nad(+)
And Acetate
pdb|3VDQ|B Chain B, Crystal Structure Of Alcaligenes Faecalis
D-3-Hydroxybutyrate Dehydrogenase In Complex With Nad(+)
And Acetate
pdb|3VDQ|C Chain C, Crystal Structure Of Alcaligenes Faecalis
D-3-Hydroxybutyrate Dehydrogenase In Complex With Nad(+)
And Acetate
pdb|3VDQ|D Chain D, Crystal Structure Of Alcaligenes Faecalis
D-3-Hydroxybutyrate Dehydrogenase In Complex With Nad(+)
And Acetate
Length = 260
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVRE 210
+KGK+AVV G ++ +GL ++ L KA A V I + PE I RE
Sbjct: 2 LKGKKAVVTGSTSGIGLAMATELAKAGADVVI--NGFGQPEDIERE 45
>pdb|3PPH|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Threonine Variant
pdb|3PPH|B Chain B, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Threonine Variant
Length = 789
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 44 VVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHE-LNVMP 96
V I +KD +Y+ + +G+ FDI P S+ E +S++ E L V P
Sbjct: 698 VSIEFSKKDDPNYIQEFSEYPNHIGLGLFDIHSPRIPSKQEFVSRIEEILKVYP 751
>pdb|3PPF|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Alanine Variant
Without Zinc
pdb|3PPG|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Alanine Variant
With Zinc
Length = 789
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 44 VVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHE-LNVMP 96
V I +KD +Y+ + +G+ FDI P S+ E +S++ E L V P
Sbjct: 698 VSIEFSKKDDPNYIQEFSEYPNHIGLGLFDIHSPRIPSKQEFVSRIEEILKVYP 751
>pdb|3PQA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661
pdb|3PQA|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661
pdb|3PQA|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661
pdb|3PQA|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661
pdb|3RHD|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661 Complexed With Nadp
pdb|3RHD|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661 Complexed With Nadp
pdb|3RHD|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661 Complexed With Nadp
pdb|3RHD|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661 Complexed With Nadp
Length = 486
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 151 PKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVS-----LLLLKADATVTIVHSHTTDPE 205
P G LL +G + G VV + N++ S L+ KA + +P
Sbjct: 190 PLGVYNLLTGAGEVV-GDEIVVNEKVNMISFTGSSKVGELITKKAGFKKIALELGGVNPN 248
Query: 206 SIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDS 246
++++AD+ A +IKGS+I G I VG VD+S
Sbjct: 249 IVLKDADLNKAVNA---LIKGSFIYAGQVCISVGMILVDES 286
>pdb|3PPC|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Tyrosine Variant
With Zinc
pdb|3PPC|B Chain B, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Tyrosine Variant
With Zinc
Length = 789
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 44 VVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHE-LNVMP 96
V I +KD +Y+ + +G+ FDI P S+ E +S++ E L V P
Sbjct: 698 VSIEFSKKDDPNYIQEFSEYPNHIGLGLFDIHSPRIPSKQEFVSRIEEILKVYP 751
>pdb|1WIH|A Chain A, Solution Structure Of Rsgi Ruh-021, A Domain Ii Of
Ribosome Recycling Factor From Mouse Cdna
Length = 84
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 57 VSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPK 109
+SMK V + SF PE + A + +N+ P+V G L+++P+PK
Sbjct: 28 ISMKSPQVILVNMASF----PECTAAAIKAIRESGMNLNPEVEGTLIRVPIPK 76
>pdb|4ASI|A Chain A, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|B Chain B, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|C Chain C, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|D Chain D, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|E Chain E, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|F Chain F, Crystal Structure Of Human Acaca C-Terminal Domain
Length = 769
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 153 GCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREAD 212
G + S + + VVVGR+ + G+PV ++ ++ T T+ S DP ++ EA
Sbjct: 384 GFFDYGSFSEIMQPWAQTVVVGRARLGGIPVGVVAVE---TRTVELSIPADPANLDSEAK 440
Query: 213 IVIAAAGQAMM 223
I I AGQ
Sbjct: 441 I-IQQAGQVWF 450
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 28.1 bits (61), Expect = 6.1, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDI-DLPEQVSEAELISKVHELNVMPDVHG 100
L V+V GR+ ++ K +EV K+ + + PE + E + +++++ + D+
Sbjct: 224 LMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKDIRN 283
Query: 101 ILVQLPLP 108
+ V P+P
Sbjct: 284 LYVTFPIP 291
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 28.1 bits (61), Expect = 6.1, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDI-DLPEQVSEAELISKVHELNVMPDVHG 100
L V+V GR+ ++ K +EV K+ + + PE + E + +++++ + D+
Sbjct: 211 LMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKDIRN 270
Query: 101 ILVQLPLP 108
+ V P+P
Sbjct: 271 LYVTFPIP 278
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 28.1 bits (61), Expect = 6.1, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDI-DLPEQVSEAELISKVHELNVMPDVHG 100
L V+V GR+ ++ K +EV K+ + + PE + E + +++++ + D+
Sbjct: 224 LMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKDIRN 283
Query: 101 ILVQLPLP 108
+ V P+P
Sbjct: 284 LYVTFPIP 291
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 28.1 bits (61), Expect = 6.1, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDI-DLPEQVSEAELISKVHELNVMPDVHG 100
L V+V GR+ ++ K +EV K+ + + PE + E + +++++ + D+
Sbjct: 253 LMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKDIRN 312
Query: 101 ILVQLPLP 108
+ V P+P
Sbjct: 313 LYVTFPIP 320
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 28.1 bits (61), Expect = 6.1, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDI-DLPEQVSEAELISKVHELNVMPDVHG 100
L V+V GR+ ++ K +EV K+ + + PE + E + +++++ + D+
Sbjct: 224 LMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKDIRN 283
Query: 101 ILVQLPLP 108
+ V P+P
Sbjct: 284 LYVTFPIP 291
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 28.1 bits (61), Expect = 6.1, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDI-DLPEQVSEAELISKVHELNVMPDVHG 100
L V+V GR+ ++ K +EV K+ + + PE + E + +++++ + D+
Sbjct: 224 LMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKDIRN 283
Query: 101 ILVQLPLP 108
+ V P+P
Sbjct: 284 LYVTFPIP 291
>pdb|1V0Z|A Chain A, Structure Of Neuraminidase From English Duck Subtype N6
pdb|1V0Z|B Chain B, Structure Of Neuraminidase From English Duck Subtype N6
pdb|1V0Z|C Chain C, Structure Of Neuraminidase From English Duck Subtype N6
pdb|1V0Z|D Chain D, Structure Of Neuraminidase From English Duck Subtype N6
pdb|1W1X|A Chain A, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 277 K.
pdb|1W1X|B Chain B, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 277 K.
pdb|1W1X|C Chain C, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 277 K.
pdb|1W1X|D Chain D, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 277 K.
pdb|1W20|A Chain A, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 291 K
pdb|1W20|B Chain B, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 291 K
pdb|1W20|C Chain C, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 291 K
pdb|1W20|D Chain D, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 291 K
pdb|1W21|A Chain A, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 43 Hours At 291 K.
pdb|1W21|B Chain B, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 43 Hours At 291 K.
pdb|1W21|C Chain C, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 43 Hours At 291 K.
pdb|1W21|D Chain D, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 43 Hours At 291 K.
pdb|2CML|A Chain A, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Zanamivir, Crystal Soaked For 3
Hours At 291 K.
pdb|2CML|B Chain B, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Zanamivir, Crystal Soaked For 3
Hours At 291 K.
pdb|2CML|C Chain C, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Zanamivir, Crystal Soaked For 3
Hours At 291 K.
pdb|2CML|D Chain D, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Zanamivir, Crystal Soaked For 3
Hours At 291 K
Length = 389
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 142 RDPLFLPCTPKGCLELLKRSGVTIKGKRA 170
R+P +L C P+GC G T++G+ A
Sbjct: 37 REP-YLSCDPQGCRMFALSQGTTLRGRHA 64
>pdb|2Q2Q|A Chain A, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2Q|B Chain B, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2Q|C Chain C, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2Q|D Chain D, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2Q|E Chain E, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2Q|F Chain F, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2Q|G Chain G, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2Q|H Chain H, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2V|A Chain A, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2V|B Chain B, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2V|C Chain C, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2V|D Chain D, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2W|A Chain A, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2W|B Chain B, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2W|C Chain C, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2W|D Chain D, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
Length = 255
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTI 196
T+KGK A+V G ++ +GL ++ +L +A A + +
Sbjct: 1 TLKGKTALVTGSTSGIGLGIAQVLARAGANIVL 33
>pdb|3TV5|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 1
pdb|3TV5|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 1
pdb|3TV5|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 1
pdb|3TVU|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 3
pdb|3TVU|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 3
pdb|3TVU|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 3
pdb|3TVW|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 4
pdb|3TVW|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 4
pdb|3TVW|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 4
pdb|3TZ3|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 2
pdb|3TZ3|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 2
pdb|3TZ3|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 2
Length = 769
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSW 228
+ VVVGR+ + G+P+ ++ ++ ++ + +P S A+ +I AGQ + S
Sbjct: 403 KGVVVGRARLGGIPLGVIGVETRTVENLIPADPANPNS----AETLIQQAGQ-VWFPNSA 457
Query: 229 IKPGAAVIDVGT 240
K A+ D
Sbjct: 458 FKTAQAINDFNN 469
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,984,111
Number of Sequences: 62578
Number of extensions: 312368
Number of successful extensions: 1305
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1271
Number of HSP's gapped (non-prelim): 40
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)