Query 022295
Match_columns 299
No_of_seqs 229 out of 1492
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 02:26:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022295.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022295hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0190 FolD 5,10-methylene-te 100.0 1E-96 2E-101 678.2 31.3 281 10-298 1-281 (283)
2 PLN02516 methylenetetrahydrofo 100.0 2.5E-96 5E-101 685.5 32.9 298 1-298 1-298 (299)
3 PLN02616 tetrahydrofolate dehy 100.0 1.8E-96 4E-101 697.4 32.1 293 6-298 70-362 (364)
4 PLN02897 tetrahydrofolate dehy 100.0 2.5E-96 5E-101 693.9 31.3 292 6-297 53-344 (345)
5 PRK14171 bifunctional 5,10-met 100.0 5.3E-96 1E-100 680.2 31.9 283 8-297 1-283 (288)
6 PRK14170 bifunctional 5,10-met 100.0 1.2E-95 2E-100 676.8 31.0 282 8-298 1-282 (284)
7 PRK14168 bifunctional 5,10-met 100.0 2.1E-95 5E-100 679.3 31.6 293 7-299 1-297 (297)
8 PRK14185 bifunctional 5,10-met 100.0 4.1E-95 9E-100 675.7 31.4 286 10-297 2-291 (293)
9 PRK14187 bifunctional 5,10-met 100.0 6.5E-95 1.4E-99 674.6 31.6 287 8-297 1-287 (294)
10 PRK14190 bifunctional 5,10-met 100.0 9.3E-95 2E-99 671.7 30.7 283 7-298 1-283 (284)
11 PRK14182 bifunctional 5,10-met 100.0 1.2E-94 2.5E-99 669.5 31.0 280 10-298 2-282 (282)
12 PRK14169 bifunctional 5,10-met 100.0 1.4E-94 3E-99 669.5 31.3 280 9-297 1-280 (282)
13 PRK14172 bifunctional 5,10-met 100.0 1.1E-94 2.4E-99 669.0 29.7 278 8-294 1-278 (278)
14 PRK14167 bifunctional 5,10-met 100.0 1.7E-94 3.7E-99 673.2 31.2 287 8-298 1-291 (297)
15 PRK14166 bifunctional 5,10-met 100.0 2.1E-94 4.5E-99 668.4 31.2 280 10-297 2-281 (282)
16 PRK14184 bifunctional 5,10-met 100.0 5E-94 1.1E-98 666.9 30.4 281 10-299 2-286 (286)
17 PRK14186 bifunctional 5,10-met 100.0 8.4E-94 1.8E-98 668.5 31.4 286 8-297 1-286 (297)
18 PRK14177 bifunctional 5,10-met 100.0 7.9E-94 1.7E-98 664.5 30.5 278 8-297 2-279 (284)
19 PRK14180 bifunctional 5,10-met 100.0 1.1E-93 2.3E-98 663.6 30.6 280 10-297 2-281 (282)
20 PRK14181 bifunctional 5,10-met 100.0 1.6E-93 3.5E-98 663.3 30.2 282 10-297 1-286 (287)
21 PRK14193 bifunctional 5,10-met 100.0 2.4E-93 5.1E-98 661.9 31.2 281 7-297 1-283 (284)
22 PRK14183 bifunctional 5,10-met 100.0 2.4E-93 5.2E-98 660.4 30.8 279 10-296 2-280 (281)
23 PRK14189 bifunctional 5,10-met 100.0 4E-93 8.6E-98 661.1 31.4 283 7-298 1-283 (285)
24 PRK14176 bifunctional 5,10-met 100.0 5.8E-93 1.3E-97 659.6 31.4 280 8-296 7-286 (287)
25 PRK10792 bifunctional 5,10-met 100.0 8E-93 1.7E-97 658.6 30.4 284 7-298 1-284 (285)
26 PRK14191 bifunctional 5,10-met 100.0 2.6E-92 5.7E-97 655.2 30.5 280 10-297 2-281 (285)
27 PRK14179 bifunctional 5,10-met 100.0 3.5E-92 7.6E-97 654.5 31.1 282 8-297 1-282 (284)
28 PRK14173 bifunctional 5,10-met 100.0 5.3E-92 1.1E-96 653.7 30.1 280 7-297 1-282 (287)
29 PRK14174 bifunctional 5,10-met 100.0 1.5E-91 3.2E-96 653.8 31.7 290 10-299 2-295 (295)
30 PRK14175 bifunctional 5,10-met 100.0 1.5E-91 3.3E-96 651.2 30.5 283 7-298 1-283 (286)
31 PRK14194 bifunctional 5,10-met 100.0 3.3E-90 7.2E-95 645.4 31.6 285 7-297 2-286 (301)
32 PRK14178 bifunctional 5,10-met 100.0 7.2E-90 1.6E-94 637.2 28.9 274 10-296 1-274 (279)
33 PRK14188 bifunctional 5,10-met 100.0 1.7E-88 3.7E-93 634.3 32.4 288 8-297 1-289 (296)
34 KOG4230 C1-tetrahydrofolate sy 100.0 1E-88 2.3E-93 662.7 27.8 291 7-297 1-292 (935)
35 PRK14192 bifunctional 5,10-met 100.0 6.9E-84 1.5E-88 601.5 29.7 283 7-298 1-283 (283)
36 KOG0089 Methylenetetrahydrofol 100.0 1.2E-81 2.6E-86 569.4 26.5 290 8-297 7-306 (309)
37 PF02882 THF_DHG_CYH_C: Tetrah 100.0 2.1E-55 4.5E-60 378.4 13.8 160 130-296 1-160 (160)
38 cd01079 NAD_bind_m-THF_DH NAD 100.0 1.3E-49 2.7E-54 350.1 15.3 157 122-296 1-195 (197)
39 cd05212 NAD_bind_m-THF_DH_Cycl 100.0 3.5E-43 7.6E-48 296.6 13.5 136 143-293 4-139 (140)
40 cd01080 NAD_bind_m-THF_DH_Cycl 100.0 7.2E-43 1.6E-47 303.2 14.8 168 122-294 1-168 (168)
41 PF00763 THF_DHG_CYH: Tetrahyd 100.0 1E-35 2.3E-40 244.0 11.8 117 10-127 1-117 (117)
42 PRK12549 shikimate 5-dehydroge 99.9 1E-22 2.2E-27 190.5 17.8 224 44-298 8-266 (284)
43 PRK12548 shikimate 5-dehydroge 99.9 1.6E-22 3.4E-27 189.5 15.8 222 44-298 12-275 (289)
44 PRK00258 aroE shikimate 5-dehy 99.9 1.4E-22 3E-27 188.7 15.2 220 46-298 10-260 (278)
45 PRK12749 quinate/shikimate deh 99.9 2.1E-22 4.6E-27 188.7 16.5 221 45-298 11-272 (288)
46 PRK12550 shikimate 5-dehydroge 99.9 2.4E-22 5.2E-27 186.9 16.5 223 38-298 7-255 (272)
47 COG0169 AroE Shikimate 5-dehyd 99.9 3.5E-22 7.5E-27 186.5 16.4 210 57-299 22-266 (283)
48 TIGR01809 Shik-DH-AROM shikima 99.9 9.3E-22 2E-26 183.7 17.4 222 44-298 8-270 (282)
49 PRK14027 quinate/shikimate deh 99.9 1.1E-21 2.5E-26 183.4 15.2 222 46-298 9-268 (283)
50 TIGR00507 aroE shikimate 5-deh 99.9 1.4E-21 3.1E-26 181.0 15.2 219 47-298 6-253 (270)
51 PLN02520 bifunctional 3-dehydr 99.8 3.2E-19 7E-24 179.8 17.2 220 44-298 255-514 (529)
52 PRK09310 aroDE bifunctional 3- 99.8 3.7E-19 8.1E-24 177.3 15.0 218 45-298 219-455 (477)
53 PRK08306 dipicolinate synthase 99.6 3E-15 6.6E-20 140.9 10.7 130 150-294 134-286 (296)
54 TIGR02853 spore_dpaA dipicolin 99.5 9.1E-14 2E-18 130.4 10.4 128 149-292 132-283 (287)
55 PF01488 Shikimate_DH: Shikima 99.2 2E-11 4.4E-16 102.1 5.1 88 157-245 2-115 (135)
56 cd01065 NAD_bind_Shikimate_DH 99.2 4.6E-10 1E-14 94.5 12.9 127 151-298 3-155 (155)
57 cd05191 NAD_bind_amino_acid_DH 99.2 1.1E-10 2.3E-15 90.3 7.4 78 149-239 1-86 (86)
58 PTZ00075 Adenosylhomocysteinas 99.1 1.1E-10 2.3E-15 116.0 8.1 117 156-276 243-375 (476)
59 PF00670 AdoHcyase_NAD: S-aden 99.1 1.8E-10 4E-15 99.4 7.1 90 152-242 7-113 (162)
60 COG0373 HemA Glutamyl-tRNA red 99.0 8.2E-10 1.8E-14 108.0 8.0 121 114-246 136-281 (414)
61 PRK13940 glutamyl-tRNA reducta 98.9 4.8E-09 1E-13 103.3 9.4 96 150-246 164-280 (414)
62 cd05311 NAD_bind_2_malic_enz N 98.9 4.2E-09 9.1E-14 95.7 8.2 94 149-245 7-133 (226)
63 PRK14982 acyl-ACP reductase; P 98.8 3.8E-08 8.3E-13 94.5 10.5 94 153-246 141-253 (340)
64 cd01078 NAD_bind_H4MPT_DH NADP 98.8 7E-08 1.5E-12 84.9 11.5 92 154-245 15-135 (194)
65 PRK05476 S-adenosyl-L-homocyst 98.7 3.4E-08 7.3E-13 97.5 7.6 94 148-242 192-302 (425)
66 PRK00676 hemA glutamyl-tRNA re 98.7 9.3E-08 2E-12 91.7 9.0 94 151-246 159-268 (338)
67 TIGR00936 ahcY adenosylhomocys 98.6 1.9E-07 4.2E-12 91.7 8.5 93 149-242 176-285 (406)
68 PLN00203 glutamyl-tRNA reducta 98.5 2.6E-07 5.6E-12 93.4 8.5 96 150-246 247-376 (519)
69 TIGR00518 alaDH alanine dehydr 98.5 6.3E-07 1.4E-11 87.1 10.2 123 165-293 165-319 (370)
70 PRK00045 hemA glutamyl-tRNA re 98.5 3.2E-07 6.9E-12 90.5 7.8 95 151-246 166-287 (423)
71 TIGR01035 hemA glutamyl-tRNA r 98.5 2.9E-07 6.3E-12 90.7 7.0 94 151-245 164-283 (417)
72 COG0499 SAM1 S-adenosylhomocys 98.4 4.2E-07 9.1E-12 87.1 7.3 86 154-240 196-297 (420)
73 cd00401 AdoHcyase S-adenosyl-L 98.4 5E-07 1.1E-11 88.9 8.1 95 147-242 182-292 (413)
74 COG5322 Predicted dehydrogenas 98.4 8.3E-07 1.8E-11 82.2 8.5 149 97-245 70-267 (351)
75 COG0686 Ald Alanine dehydrogen 98.4 2.7E-07 5.9E-12 87.0 4.9 77 165-242 166-271 (371)
76 PLN02494 adenosylhomocysteinas 98.4 7.8E-07 1.7E-11 88.6 7.7 91 149-240 235-342 (477)
77 PLN02928 oxidoreductase family 98.3 5.3E-06 1.1E-10 80.0 12.1 134 162-297 154-335 (347)
78 PF02826 2-Hacid_dh_C: D-isome 98.3 1.1E-06 2.3E-11 76.8 6.0 83 160-243 29-131 (178)
79 cd05213 NAD_bind_Glutamyl_tRNA 98.3 2.7E-06 5.9E-11 80.7 8.0 94 151-245 162-279 (311)
80 TIGR00561 pntA NAD(P) transhyd 98.2 9.2E-06 2E-10 82.0 11.2 91 151-242 138-287 (511)
81 PRK00257 erythronate-4-phospha 98.2 3E-05 6.5E-10 75.8 13.4 142 155-297 104-278 (381)
82 PRK15438 erythronate-4-phospha 98.1 3.6E-05 7.8E-10 75.1 13.1 89 154-243 103-211 (378)
83 cd01075 NAD_bind_Leu_Phe_Val_D 98.1 9.1E-06 2E-10 72.5 7.6 95 148-244 3-120 (200)
84 TIGR02992 ectoine_eutC ectoine 98.0 2.2E-05 4.8E-10 75.0 9.5 75 166-241 128-226 (326)
85 PRK13243 glyoxylate reductase; 98.0 1.2E-05 2.7E-10 77.1 7.5 81 162-243 145-244 (333)
86 PRK06436 glycerate dehydrogena 98.0 1.9E-05 4.1E-10 74.9 7.5 80 163-243 118-213 (303)
87 PRK06932 glycerate dehydrogena 98.0 1.6E-05 3.5E-10 75.7 6.7 80 163-243 143-237 (314)
88 KOG1370 S-adenosylhomocysteine 97.9 1.9E-05 4.1E-10 74.5 6.7 98 144-242 191-304 (434)
89 PRK06487 glycerate dehydrogena 97.9 2.1E-05 4.5E-10 75.0 7.0 80 163-243 144-237 (317)
90 PRK07574 formate dehydrogenase 97.9 2.1E-05 4.5E-10 77.0 6.9 133 163-296 188-356 (385)
91 PRK08410 2-hydroxyacid dehydro 97.9 2.7E-05 5.8E-10 74.1 7.4 80 163-243 141-236 (311)
92 PRK12480 D-lactate dehydrogena 97.9 2.1E-05 4.5E-10 75.4 6.7 80 163-243 142-238 (330)
93 PRK06718 precorrin-2 dehydroge 97.9 1.9E-05 4.1E-10 70.6 5.9 112 163-290 6-141 (202)
94 PRK15469 ghrA bifunctional gly 97.9 2.5E-05 5.3E-10 74.4 6.8 80 163-243 132-230 (312)
95 PRK12862 malic enzyme; Reviewe 97.9 5.7E-05 1.2E-09 79.7 10.2 172 54-243 94-295 (763)
96 PRK08605 D-lactate dehydrogena 97.9 3.9E-05 8.5E-10 73.5 8.0 81 162-243 141-240 (332)
97 PF01262 AlaDh_PNT_C: Alanine 97.9 1.1E-05 2.3E-10 69.8 3.6 77 165-242 18-142 (168)
98 PRK07232 bifunctional malic en 97.9 7E-05 1.5E-09 78.8 9.9 173 53-243 85-287 (752)
99 PRK08618 ornithine cyclodeamin 97.8 9.2E-05 2E-09 70.7 9.5 74 166-241 126-223 (325)
100 PLN02306 hydroxypyruvate reduc 97.8 4.2E-05 9.2E-10 74.9 7.1 81 162-243 160-276 (386)
101 PRK15409 bifunctional glyoxyla 97.8 4.8E-05 1E-09 72.7 7.1 81 162-243 140-240 (323)
102 PRK08291 ectoine utilization p 97.8 0.00011 2.3E-09 70.4 9.5 88 151-241 118-229 (330)
103 COG0111 SerA Phosphoglycerate 97.8 4.5E-05 9.8E-10 73.0 6.9 82 161-243 136-237 (324)
104 PLN03139 formate dehydrogenase 97.8 5E-05 1.1E-09 74.4 6.9 132 163-296 195-363 (386)
105 PRK06141 ornithine cyclodeamin 97.7 0.00014 3E-09 69.2 9.1 77 164-241 122-221 (314)
106 PRK09424 pntA NAD(P) transhydr 97.7 0.00012 2.5E-09 74.2 8.7 91 151-242 139-288 (509)
107 PF03446 NAD_binding_2: NAD bi 97.7 4.8E-05 1E-09 65.3 5.2 74 168-242 2-97 (163)
108 COG0281 SfcA Malic enzyme [Ene 97.7 0.00012 2.7E-09 71.7 8.4 171 52-239 98-300 (432)
109 PRK07340 ornithine cyclodeamin 97.7 0.00022 4.8E-09 67.6 10.0 77 164-242 122-220 (304)
110 PRK11790 D-3-phosphoglycerate 97.7 7.3E-05 1.6E-09 73.7 6.9 80 162-242 146-242 (409)
111 TIGR01327 PGDH D-3-phosphoglyc 97.7 8.9E-05 1.9E-09 75.3 7.5 81 162-243 133-233 (525)
112 PRK13581 D-3-phosphoglycerate 97.7 0.0001 2.3E-09 74.8 7.4 81 162-243 135-234 (526)
113 PRK12861 malic enzyme; Reviewe 97.6 0.00016 3.4E-09 76.2 8.3 172 54-243 90-291 (764)
114 PF13241 NAD_binding_7: Putati 97.6 7.9E-05 1.7E-09 59.4 4.3 60 163-223 3-73 (103)
115 COG2084 MmsB 3-hydroxyisobutyr 97.5 0.00026 5.6E-09 66.7 7.1 72 169-241 2-97 (286)
116 PF08501 Shikimate_dh_N: Shiki 97.5 7E-05 1.5E-09 57.6 2.4 60 58-122 13-72 (83)
117 COG1052 LdhA Lactate dehydroge 97.4 0.00029 6.2E-09 67.6 6.7 81 162-243 141-240 (324)
118 PRK06719 precorrin-2 dehydroge 97.4 0.00021 4.6E-09 61.4 5.1 115 162-291 8-142 (157)
119 PRK11199 tyrA bifunctional cho 97.4 0.0003 6.5E-09 68.5 6.7 73 167-241 98-177 (374)
120 PRK14619 NAD(P)H-dependent gly 97.4 0.00039 8.5E-09 65.6 6.7 73 166-239 3-82 (308)
121 TIGR02371 ala_DH_arch alanine 97.3 0.00057 1.2E-08 65.3 7.2 75 166-241 127-224 (325)
122 PF02423 OCD_Mu_crystall: Orni 97.3 0.00066 1.4E-08 64.6 7.3 40 203-242 185-227 (313)
123 PRK14804 ornithine carbamoyltr 97.3 0.0063 1.4E-07 58.1 13.9 188 10-217 8-225 (311)
124 PRK06823 ornithine cyclodeamin 97.2 0.0007 1.5E-08 64.6 6.8 39 203-241 185-224 (315)
125 PRK01438 murD UDP-N-acetylmura 97.2 0.0012 2.5E-08 66.0 8.5 129 158-293 7-147 (480)
126 PF01210 NAD_Gly3P_dh_N: NAD-d 97.2 0.0006 1.3E-08 58.2 5.3 69 169-238 1-102 (157)
127 cd05312 NAD_bind_1_malic_enz N 97.2 0.00081 1.8E-08 63.1 6.2 93 149-243 7-143 (279)
128 TIGR01470 cysG_Nterm siroheme 97.1 0.00088 1.9E-08 60.1 5.9 59 163-222 5-81 (205)
129 COG2085 Predicted dinucleotide 97.1 0.0008 1.7E-08 60.6 5.5 72 168-242 2-95 (211)
130 PLN02712 arogenate dehydrogena 97.1 0.00088 1.9E-08 70.0 6.6 80 161-241 363-462 (667)
131 cd00762 NAD_bind_malic_enz NAD 97.1 0.00076 1.6E-08 62.5 5.3 93 149-243 7-144 (254)
132 KOG0069 Glyoxylate/hydroxypyru 97.1 0.0008 1.7E-08 64.7 5.6 80 163-243 158-257 (336)
133 TIGR01505 tartro_sem_red 2-hyd 97.1 0.00088 1.9E-08 62.5 5.8 72 169-241 1-95 (291)
134 PRK07589 ornithine cyclodeamin 97.1 0.0013 2.8E-08 63.7 6.7 74 168-242 130-228 (346)
135 PRK06407 ornithine cyclodeamin 97.1 0.0012 2.6E-08 62.6 6.3 76 166-242 116-215 (301)
136 PRK13403 ketol-acid reductoiso 97.1 0.001 2.2E-08 63.8 5.8 71 164-235 13-102 (335)
137 PRK11559 garR tartronate semia 97.0 0.0013 2.8E-08 61.4 6.4 74 168-242 3-99 (296)
138 PRK15461 NADH-dependent gamma- 97.0 0.00095 2.1E-08 62.8 5.5 74 168-242 2-98 (296)
139 COG0287 TyrA Prephenate dehydr 97.0 0.0014 3E-08 61.6 6.5 73 167-241 3-100 (279)
140 PRK03515 ornithine carbamoyltr 97.0 0.01 2.2E-07 57.2 12.3 148 50-217 54-232 (336)
141 PRK01713 ornithine carbamoyltr 97.0 0.016 3.4E-07 55.9 13.6 149 50-217 55-232 (334)
142 PLN02256 arogenate dehydrogena 97.0 0.0026 5.7E-08 60.4 7.9 76 164-240 33-128 (304)
143 PRK12562 ornithine carbamoyltr 97.0 0.049 1.1E-06 52.5 16.7 186 11-218 9-233 (334)
144 PRK06046 alanine dehydrogenase 97.0 0.0037 8.1E-08 59.7 8.9 74 166-241 128-225 (326)
145 PF03949 Malic_M: Malic enzyme 97.0 0.001 2.2E-08 61.7 4.7 92 150-243 8-144 (255)
146 PRK00856 pyrB aspartate carbam 97.0 0.02 4.4E-07 54.5 13.7 151 50-218 54-221 (305)
147 PF03807 F420_oxidored: NADP o 96.9 0.00061 1.3E-08 52.7 2.8 70 169-239 1-94 (96)
148 PRK02255 putrescine carbamoylt 96.9 0.089 1.9E-06 50.8 17.7 186 10-216 5-228 (338)
149 COG1648 CysG Siroheme synthase 96.9 0.0023 4.9E-08 57.8 6.1 114 163-291 8-145 (210)
150 PRK04284 ornithine carbamoyltr 96.8 0.014 3.1E-07 56.2 11.7 185 11-217 9-231 (332)
151 PRK14805 ornithine carbamoyltr 96.8 0.13 2.7E-06 49.0 18.0 147 50-218 47-222 (302)
152 PRK02102 ornithine carbamoyltr 96.8 0.026 5.6E-07 54.4 13.4 187 10-217 9-231 (331)
153 PRK14031 glutamate dehydrogena 96.8 0.0088 1.9E-07 59.7 10.3 53 145-198 202-259 (444)
154 PRK07502 cyclohexadienyl dehyd 96.8 0.002 4.3E-08 60.7 5.5 73 168-241 7-102 (307)
155 PRK08818 prephenate dehydrogen 96.8 0.0021 4.6E-08 62.7 5.8 76 166-241 3-90 (370)
156 TIGR00670 asp_carb_tr aspartat 96.8 0.028 6E-07 53.4 13.2 149 50-217 48-223 (301)
157 PRK13529 malate dehydrogenase; 96.8 0.0078 1.7E-07 61.4 9.7 139 83-239 228-417 (563)
158 PLN02342 ornithine carbamoyltr 96.7 0.021 4.6E-07 55.3 12.2 187 10-217 47-266 (348)
159 PRK13814 pyrB aspartate carbam 96.7 0.043 9.2E-07 52.4 14.1 150 50-216 54-223 (310)
160 PRK07417 arogenate dehydrogena 96.7 0.0013 2.7E-08 61.3 3.4 72 169-241 2-93 (279)
161 TIGR01692 HIBADH 3-hydroxyisob 96.7 0.0024 5.2E-08 59.7 5.3 69 172-241 1-92 (288)
162 PRK06545 prephenate dehydrogen 96.7 0.0026 5.7E-08 61.5 5.7 73 168-241 1-97 (359)
163 TIGR00658 orni_carb_tr ornithi 96.7 0.027 5.8E-07 53.6 12.4 147 51-217 49-223 (304)
164 PRK11891 aspartate carbamoyltr 96.7 0.026 5.6E-07 56.2 12.5 190 11-219 90-317 (429)
165 PRK12490 6-phosphogluconate de 96.7 0.0037 7.9E-08 58.9 6.1 72 169-241 2-96 (299)
166 PRK11064 wecC UDP-N-acetyl-D-m 96.6 0.0028 6E-08 62.6 5.5 74 168-242 4-122 (415)
167 PRK15059 tartronate semialdehy 96.6 0.0061 1.3E-07 57.4 7.4 72 169-241 2-95 (292)
168 PF00056 Ldh_1_N: lactate/mala 96.6 0.0041 8.9E-08 52.4 5.6 54 169-222 2-81 (141)
169 PRK00779 ornithine carbamoyltr 96.6 0.17 3.6E-06 48.2 17.0 187 10-217 6-224 (304)
170 COG1748 LYS9 Saccharopine dehy 96.6 0.0019 4.2E-08 63.3 3.8 110 168-291 2-139 (389)
171 PLN02527 aspartate carbamoyltr 96.5 0.16 3.5E-06 48.3 16.5 150 50-218 48-226 (306)
172 PLN03129 NADP-dependent malic 96.5 0.0052 1.1E-07 62.9 6.6 99 143-243 297-439 (581)
173 PF07991 IlvN: Acetohydroxy ac 96.5 0.0049 1.1E-07 53.6 5.4 70 165-235 2-91 (165)
174 PTZ00317 NADP-dependent malic 96.5 0.018 4E-07 58.7 10.4 140 82-239 229-416 (559)
175 TIGR03316 ygeW probable carbam 96.5 0.051 1.1E-06 52.9 13.0 157 50-217 51-252 (357)
176 PF01118 Semialdhyde_dh: Semia 96.5 0.0022 4.7E-08 52.3 3.1 75 169-243 1-101 (121)
177 PRK08655 prephenate dehydrogen 96.5 0.0048 1E-07 61.4 5.9 72 169-240 2-93 (437)
178 PRK12491 pyrroline-5-carboxyla 96.5 0.0047 1E-07 57.6 5.4 71 168-240 3-98 (272)
179 cd05313 NAD_bind_2_Glu_DH NAD( 96.4 0.01 2.2E-07 55.1 7.4 56 144-200 11-71 (254)
180 PRK07679 pyrroline-5-carboxyla 96.4 0.006 1.3E-07 56.7 5.9 72 166-238 2-98 (279)
181 PRK08192 aspartate carbamoyltr 96.4 0.052 1.1E-06 52.4 12.2 189 11-218 8-234 (338)
182 PRK03369 murD UDP-N-acetylmura 96.4 0.0062 1.3E-07 61.3 6.1 111 165-293 10-142 (488)
183 PRK08507 prephenate dehydrogen 96.4 0.008 1.7E-07 55.7 6.3 70 169-241 2-93 (275)
184 PRK09599 6-phosphogluconate de 96.3 0.0078 1.7E-07 56.6 6.3 72 169-241 2-96 (301)
185 PRK02472 murD UDP-N-acetylmura 96.3 0.0065 1.4E-07 59.8 6.0 122 165-293 3-133 (447)
186 PRK14106 murD UDP-N-acetylmura 96.3 0.0075 1.6E-07 59.5 6.4 37 164-201 2-38 (450)
187 COG2423 Predicted ornithine cy 96.3 0.012 2.6E-07 56.6 7.4 74 167-241 130-227 (330)
188 PRK09414 glutamate dehydrogena 96.3 0.037 8E-07 55.3 10.9 51 146-197 207-261 (445)
189 PRK09260 3-hydroxybutyryl-CoA 96.3 0.008 1.7E-07 56.1 5.9 72 168-240 2-119 (288)
190 PRK14618 NAD(P)H-dependent gly 96.3 0.0071 1.5E-07 57.4 5.6 72 168-240 5-105 (328)
191 PRK07200 aspartate/ornithine c 96.3 0.12 2.6E-06 51.0 14.2 196 11-218 23-270 (395)
192 PLN02688 pyrroline-5-carboxyla 96.2 0.0089 1.9E-07 54.8 5.9 68 169-238 2-94 (266)
193 TIGR03026 NDP-sugDHase nucleot 96.2 0.011 2.3E-07 58.2 6.8 71 169-240 2-121 (411)
194 PRK00094 gpsA NAD(P)H-dependen 96.2 0.0078 1.7E-07 56.5 5.6 70 169-239 3-105 (325)
195 PF10727 Rossmann-like: Rossma 96.2 0.0095 2.1E-07 49.6 5.4 71 168-239 11-104 (127)
196 cd01076 NAD_bind_1_Glu_DH NAD( 96.2 0.016 3.6E-07 52.7 7.3 53 146-199 6-63 (227)
197 PRK14030 glutamate dehydrogena 96.2 0.035 7.6E-07 55.5 10.2 50 146-196 203-256 (445)
198 TIGR00872 gnd_rel 6-phosphoglu 96.2 0.0063 1.4E-07 57.3 4.6 72 169-241 2-95 (298)
199 PRK00421 murC UDP-N-acetylmura 96.2 0.017 3.8E-07 57.4 8.0 122 165-293 5-132 (461)
200 PRK05479 ketol-acid reductoiso 96.2 0.01 2.2E-07 57.2 6.0 70 165-235 15-104 (330)
201 cd05291 HicDH_like L-2-hydroxy 96.2 0.012 2.5E-07 55.7 6.4 54 168-222 1-80 (306)
202 PRK05562 precorrin-2 dehydroge 96.1 0.0095 2E-07 54.3 5.3 60 163-223 21-98 (223)
203 PRK05579 bifunctional phosphop 96.1 0.027 5.8E-07 55.6 8.7 94 149-242 168-305 (399)
204 PF03721 UDPG_MGDP_dh_N: UDP-g 96.1 0.0077 1.7E-07 53.1 4.4 53 168-221 1-87 (185)
205 PRK06728 aspartate-semialdehyd 96.0 0.02 4.4E-07 55.5 7.3 112 166-285 4-138 (347)
206 PLN02968 Probable N-acetyl-gam 96.0 0.015 3.2E-07 57.1 6.3 76 166-243 37-138 (381)
207 TIGR01915 npdG NADPH-dependent 95.9 0.012 2.6E-07 52.8 5.1 69 169-239 2-101 (219)
208 COG0078 ArgF Ornithine carbamo 95.9 0.033 7.2E-07 52.8 8.2 139 59-218 61-229 (310)
209 PF13460 NAD_binding_10: NADH( 95.9 0.015 3.3E-07 49.5 5.5 52 170-221 1-71 (183)
210 PLN02586 probable cinnamyl alc 95.9 0.026 5.6E-07 54.2 7.6 94 147-241 164-280 (360)
211 PRK06199 ornithine cyclodeamin 95.9 0.014 3.1E-07 57.1 5.8 76 167-243 155-263 (379)
212 PRK06949 short chain dehydroge 95.8 0.013 2.9E-07 52.5 5.0 38 163-200 5-42 (258)
213 PRK01710 murD UDP-N-acetylmura 95.8 0.047 1E-06 54.3 9.4 122 165-292 12-141 (458)
214 cd05211 NAD_bind_Glu_Leu_Phe_V 95.8 0.02 4.4E-07 51.8 6.2 48 153-201 9-57 (217)
215 PRK04523 N-acetylornithine car 95.8 0.51 1.1E-05 45.6 16.0 191 10-218 5-252 (335)
216 PLN02712 arogenate dehydrogena 95.8 0.018 3.9E-07 60.4 6.4 75 165-240 50-144 (667)
217 PRK08293 3-hydroxybutyryl-CoA 95.8 0.02 4.4E-07 53.4 6.2 72 168-240 4-121 (287)
218 TIGR00465 ilvC ketol-acid redu 95.8 0.019 4.1E-07 54.8 6.1 55 165-220 1-69 (314)
219 PLN02350 phosphogluconate dehy 95.8 0.015 3.3E-07 58.8 5.6 73 169-242 8-110 (493)
220 COG0771 MurD UDP-N-acetylmuram 95.8 0.042 9E-07 55.0 8.5 125 165-294 5-136 (448)
221 PLN02477 glutamate dehydrogena 95.7 0.024 5.1E-07 56.2 6.7 54 146-200 181-239 (410)
222 PLN02858 fructose-bisphosphate 95.7 0.014 3.1E-07 65.6 5.8 75 166-241 3-100 (1378)
223 PRK06398 aldose dehydrogenase; 95.7 0.027 5.9E-07 51.1 6.6 37 164-200 3-39 (258)
224 PTZ00142 6-phosphogluconate de 95.7 0.017 3.8E-07 58.1 5.6 72 169-241 3-103 (470)
225 PLN02383 aspartate semialdehyd 95.7 0.038 8.2E-07 53.4 7.7 78 166-243 6-104 (344)
226 PRK00066 ldh L-lactate dehydro 95.6 0.032 6.9E-07 53.2 6.8 56 166-222 5-85 (315)
227 PTZ00117 malate dehydrogenase; 95.6 0.036 7.9E-07 52.9 7.1 56 165-222 3-85 (319)
228 PRK01368 murD UDP-N-acetylmura 95.6 0.025 5.4E-07 56.5 6.3 121 166-293 5-129 (454)
229 PRK07680 late competence prote 95.6 0.02 4.3E-07 53.0 5.2 70 169-240 2-97 (273)
230 PRK09072 short chain dehydroge 95.5 0.019 4.2E-07 51.9 4.9 37 164-200 2-38 (263)
231 PF02737 3HCDH_N: 3-hydroxyacy 95.5 0.026 5.7E-07 49.4 5.5 49 169-219 1-87 (180)
232 PRK12367 short chain dehydroge 95.5 0.027 5.8E-07 51.4 5.7 37 164-200 11-47 (245)
233 PRK06550 fabG 3-ketoacyl-(acyl 95.5 0.031 6.6E-07 49.5 5.9 57 164-220 2-77 (235)
234 PRK14874 aspartate-semialdehyd 95.4 0.014 3.1E-07 56.0 3.8 76 167-242 1-97 (334)
235 PRK06130 3-hydroxybutyryl-CoA 95.4 0.027 6E-07 52.9 5.6 53 168-221 5-90 (311)
236 PRK12828 short chain dehydroge 95.4 0.022 4.7E-07 50.1 4.6 38 164-201 4-41 (239)
237 PRK08862 short chain dehydroge 95.4 0.018 3.9E-07 51.8 4.0 39 164-202 2-40 (227)
238 PRK07523 gluconate 5-dehydroge 95.4 0.016 3.5E-07 52.1 3.7 37 164-200 7-43 (255)
239 PRK10637 cysG siroheme synthas 95.4 0.022 4.8E-07 57.0 5.0 60 163-223 8-85 (457)
240 PRK06476 pyrroline-5-carboxyla 95.3 0.026 5.7E-07 51.7 5.0 71 169-240 2-94 (258)
241 PRK00141 murD UDP-N-acetylmura 95.3 0.032 7E-07 55.9 6.1 125 164-293 12-146 (473)
242 PLN02858 fructose-bisphosphate 95.3 0.023 4.9E-07 64.1 5.4 74 167-241 324-420 (1378)
243 PRK06523 short chain dehydroge 95.3 0.04 8.7E-07 49.6 6.1 38 163-200 5-42 (260)
244 TIGR03366 HpnZ_proposed putati 95.3 0.048 1E-06 50.2 6.7 93 147-241 102-220 (280)
245 COG0569 TrkA K+ transport syst 95.3 0.025 5.4E-07 51.3 4.7 52 168-220 1-76 (225)
246 cd00650 LDH_MDH_like NAD-depen 95.3 0.039 8.5E-07 50.9 6.1 53 170-222 1-82 (263)
247 PRK06124 gluconate 5-dehydroge 95.2 0.019 4.2E-07 51.5 3.9 39 163-201 7-45 (256)
248 cd00757 ThiF_MoeB_HesA_family 95.2 0.015 3.3E-07 52.6 3.1 34 164-198 18-52 (228)
249 TIGR02356 adenyl_thiF thiazole 95.2 0.03 6.5E-07 49.9 4.8 35 164-199 18-53 (202)
250 TIGR01724 hmd_rel H2-forming N 95.2 0.031 6.7E-07 53.6 5.1 63 180-242 32-119 (341)
251 PRK07424 bifunctional sterol d 95.2 0.042 9E-07 54.4 6.1 40 162-201 173-212 (406)
252 TIGR00873 gnd 6-phosphoglucona 95.1 0.018 4E-07 57.8 3.7 72 169-241 1-100 (467)
253 TIGR02354 thiF_fam2 thiamine b 95.1 0.037 8.1E-07 49.4 5.2 35 164-199 18-53 (200)
254 PRK08085 gluconate 5-dehydroge 95.1 0.024 5.1E-07 51.0 4.0 37 164-200 6-42 (254)
255 PRK08339 short chain dehydroge 95.1 0.021 4.6E-07 52.1 3.7 38 163-200 4-41 (263)
256 PRK08229 2-dehydropantoate 2-r 95.1 0.045 9.8E-07 51.9 6.0 69 168-238 3-106 (341)
257 PRK05866 short chain dehydroge 95.1 0.039 8.4E-07 51.4 5.4 39 162-200 35-73 (293)
258 KOG1494 NAD-dependent malate d 95.1 0.026 5.7E-07 53.1 4.2 58 164-222 25-108 (345)
259 TIGR02355 moeB molybdopterin s 95.1 0.031 6.7E-07 51.3 4.6 34 164-198 21-55 (240)
260 TIGR02825 B4_12hDH leukotriene 95.0 0.047 1E-06 51.0 6.0 95 147-241 119-239 (325)
261 PRK09880 L-idonate 5-dehydroge 95.0 0.074 1.6E-06 50.4 7.3 85 155-241 159-268 (343)
262 PRK07062 short chain dehydroge 95.0 0.027 5.8E-07 51.0 4.2 38 163-200 4-41 (265)
263 PLN02545 3-hydroxybutyryl-CoA 95.0 0.033 7.1E-07 52.1 4.9 72 168-240 5-121 (295)
264 PRK07231 fabG 3-ketoacyl-(acyl 95.0 0.027 5.8E-07 50.1 4.1 38 164-201 2-39 (251)
265 PTZ00082 L-lactate dehydrogena 95.0 0.069 1.5E-06 51.1 7.1 56 165-222 4-86 (321)
266 PRK11863 N-acetyl-gamma-glutam 95.0 0.047 1E-06 52.2 5.9 77 168-244 3-86 (313)
267 KOG0068 D-3-phosphoglycerate d 95.0 0.042 9.1E-07 53.0 5.3 171 53-241 12-238 (406)
268 PRK05717 oxidoreductase; Valid 95.0 0.03 6.6E-07 50.4 4.3 38 162-199 5-42 (255)
269 TIGR01832 kduD 2-deoxy-D-gluco 95.0 0.041 8.8E-07 49.1 5.1 37 164-200 2-38 (248)
270 PRK07063 short chain dehydroge 94.9 0.027 5.9E-07 50.7 4.0 37 164-200 4-40 (260)
271 PRK06129 3-hydroxyacyl-CoA deh 94.9 0.051 1.1E-06 51.3 5.8 53 168-221 3-93 (308)
272 PRK06138 short chain dehydroge 94.9 0.028 6.1E-07 50.1 3.9 37 164-200 2-38 (252)
273 PRK06171 sorbitol-6-phosphate 94.9 0.076 1.6E-06 48.0 6.8 37 164-200 6-42 (266)
274 PRK08628 short chain dehydroge 94.9 0.041 8.9E-07 49.4 5.0 39 162-200 2-40 (258)
275 TIGR01850 argC N-acetyl-gamma- 94.9 0.038 8.2E-07 53.4 5.0 76 168-243 1-103 (346)
276 PRK08265 short chain dehydroge 94.9 0.034 7.4E-07 50.5 4.5 37 164-200 3-39 (261)
277 PRK05867 short chain dehydroge 94.9 0.028 6E-07 50.6 3.8 37 164-200 6-42 (253)
278 PRK08223 hypothetical protein; 94.9 0.052 1.1E-06 51.3 5.7 34 164-198 24-58 (287)
279 PLN02514 cinnamyl-alcohol dehy 94.9 0.065 1.4E-06 51.2 6.6 94 147-241 161-277 (357)
280 TIGR03325 BphB_TodD cis-2,3-di 94.9 0.035 7.6E-07 50.2 4.5 37 164-200 2-38 (262)
281 cd08294 leukotriene_B4_DH_like 94.9 0.072 1.6E-06 49.4 6.7 94 147-240 124-242 (329)
282 TIGR00521 coaBC_dfp phosphopan 94.9 0.14 3.1E-06 50.4 9.0 76 148-223 163-278 (390)
283 PRK06935 2-deoxy-D-gluconate 3 94.9 0.046 1E-06 49.3 5.2 38 163-200 11-48 (258)
284 PRK06172 short chain dehydroge 94.9 0.029 6.3E-07 50.2 3.9 37 164-200 4-40 (253)
285 PRK15057 UDP-glucose 6-dehydro 94.9 0.055 1.2E-06 53.1 6.1 71 169-242 2-120 (388)
286 PRK06057 short chain dehydroge 94.9 0.03 6.6E-07 50.4 4.0 36 165-200 5-40 (255)
287 TIGR01851 argC_other N-acetyl- 94.8 0.035 7.5E-07 53.0 4.4 75 168-243 2-84 (310)
288 PRK07819 3-hydroxybutyryl-CoA 94.8 0.066 1.4E-06 50.2 6.2 71 168-240 6-122 (286)
289 COG3288 PntA NAD/NADP transhyd 94.8 0.025 5.4E-07 53.9 3.3 91 151-242 138-284 (356)
290 PRK07066 3-hydroxybutyryl-CoA 94.8 0.073 1.6E-06 51.1 6.5 51 168-219 8-92 (321)
291 PRK06463 fabG 3-ketoacyl-(acyl 94.8 0.051 1.1E-06 48.9 5.2 37 164-200 4-40 (255)
292 PRK06035 3-hydroxyacyl-CoA deh 94.8 0.042 9.2E-07 51.3 4.8 32 168-200 4-35 (291)
293 PRK12475 thiamine/molybdopteri 94.8 0.047 1E-06 52.6 5.2 35 164-199 21-56 (338)
294 PRK07890 short chain dehydroge 94.7 0.032 6.9E-07 50.0 3.7 36 165-200 3-38 (258)
295 PF05368 NmrA: NmrA-like famil 94.7 0.052 1.1E-06 48.4 5.0 52 170-221 1-75 (233)
296 PRK05690 molybdopterin biosynt 94.7 0.051 1.1E-06 49.9 5.0 34 164-198 29-63 (245)
297 PRK04690 murD UDP-N-acetylmura 94.7 0.081 1.7E-06 53.0 6.8 123 165-293 6-140 (468)
298 PRK12829 short chain dehydroge 94.7 0.049 1.1E-06 48.9 4.8 37 164-200 8-44 (264)
299 PRK08213 gluconate 5-dehydroge 94.6 0.039 8.5E-07 49.7 4.1 38 163-200 8-45 (259)
300 smart00859 Semialdhyde_dh Semi 94.6 0.042 9.1E-07 44.5 3.9 75 169-243 1-103 (122)
301 PRK09186 flagellin modificatio 94.6 0.042 9.1E-07 49.1 4.2 36 165-200 2-37 (256)
302 PTZ00079 NADP-specific glutama 94.6 0.085 1.8E-06 52.8 6.7 53 147-200 213-270 (454)
303 cd08295 double_bond_reductase_ 94.6 0.092 2E-06 49.4 6.7 94 147-240 132-252 (338)
304 TIGR01763 MalateDH_bact malate 94.6 0.092 2E-06 49.8 6.7 53 168-222 2-81 (305)
305 PRK05872 short chain dehydroge 94.6 0.034 7.4E-07 51.7 3.7 38 163-200 5-42 (296)
306 PRK08040 putative semialdehyde 94.6 0.03 6.4E-07 54.1 3.4 78 166-243 3-101 (336)
307 cd08292 ETR_like_2 2-enoyl thi 94.6 0.14 2.9E-06 47.3 7.7 94 147-241 121-240 (324)
308 PLN02178 cinnamyl-alcohol dehy 94.5 0.097 2.1E-06 50.7 6.9 94 147-241 158-275 (375)
309 PRK08416 7-alpha-hydroxysteroi 94.5 0.05 1.1E-06 49.3 4.6 37 163-199 4-40 (260)
310 PRK08703 short chain dehydroge 94.5 0.046 9.9E-07 48.6 4.3 38 164-201 3-40 (239)
311 TIGR03589 PseB UDP-N-acetylglu 94.5 0.071 1.5E-06 50.4 5.7 35 165-199 2-38 (324)
312 PRK07060 short chain dehydroge 94.5 0.049 1.1E-06 48.3 4.4 38 163-200 5-42 (245)
313 PRK06223 malate dehydrogenase; 94.5 0.1 2.2E-06 49.1 6.7 53 168-222 3-82 (307)
314 PRK01390 murD UDP-N-acetylmura 94.5 0.08 1.7E-06 52.6 6.3 35 165-200 7-41 (460)
315 COG0240 GpsA Glycerol-3-phosph 94.5 0.09 1.9E-06 50.5 6.3 71 168-239 2-105 (329)
316 PRK07530 3-hydroxybutyryl-CoA 94.5 0.055 1.2E-06 50.5 4.8 67 168-236 5-116 (292)
317 cd00704 MDH Malate dehydrogena 94.4 0.096 2.1E-06 50.2 6.5 54 169-222 2-88 (323)
318 PRK06841 short chain dehydroge 94.4 0.064 1.4E-06 48.0 5.0 38 163-200 11-48 (255)
319 PRK07531 bifunctional 3-hydrox 94.4 0.083 1.8E-06 53.4 6.3 53 168-221 5-91 (495)
320 PRK08220 2,3-dihydroxybenzoate 94.4 0.098 2.1E-06 46.6 6.1 38 163-200 4-41 (252)
321 PRK02006 murD UDP-N-acetylmura 94.4 0.1 2.2E-06 52.5 7.0 123 165-293 5-146 (498)
322 PRK06125 short chain dehydroge 94.4 0.045 9.7E-07 49.4 4.0 37 164-200 4-40 (259)
323 TIGR01963 PHB_DH 3-hydroxybuty 94.4 0.08 1.7E-06 47.1 5.6 34 167-200 1-34 (255)
324 PRK08264 short chain dehydroge 94.4 0.059 1.3E-06 47.7 4.6 38 164-201 3-41 (238)
325 PRK05854 short chain dehydroge 94.4 0.04 8.7E-07 51.8 3.7 37 164-200 11-47 (313)
326 PLN02986 cinnamyl-alcohol dehy 94.4 0.12 2.5E-06 48.4 6.8 35 165-199 3-37 (322)
327 PF04127 DFP: DNA / pantothena 94.4 0.07 1.5E-06 47.2 5.0 78 165-242 1-121 (185)
328 PRK07097 gluconate 5-dehydroge 94.4 0.048 1.1E-06 49.4 4.2 39 162-200 5-43 (265)
329 PRK09242 tropinone reductase; 94.4 0.042 9E-07 49.4 3.7 38 163-200 5-42 (257)
330 PRK06196 oxidoreductase; Provi 94.4 0.046 1E-06 51.2 4.1 39 162-200 21-59 (315)
331 TIGR03026 NDP-sugDHase nucleot 94.4 0.15 3.3E-06 50.0 7.9 75 163-237 309-408 (411)
332 TIGR01745 asd_gamma aspartate- 94.3 0.092 2E-06 51.3 6.1 95 168-265 1-120 (366)
333 PRK05876 short chain dehydroge 94.3 0.044 9.6E-07 50.5 3.7 36 165-200 4-39 (275)
334 PRK07774 short chain dehydroge 94.3 0.06 1.3E-06 48.0 4.5 37 164-200 3-39 (250)
335 PRK13394 3-hydroxybutyrate deh 94.3 0.054 1.2E-06 48.5 4.2 37 164-200 4-40 (262)
336 CHL00194 ycf39 Ycf39; Provisio 94.3 0.078 1.7E-06 49.8 5.4 51 169-219 2-73 (317)
337 KOG0725 Reductases with broad 94.2 0.052 1.1E-06 50.6 4.1 40 163-202 4-43 (270)
338 cd05188 MDR Medium chain reduc 94.2 0.2 4.3E-06 44.4 7.8 95 147-242 115-235 (271)
339 PRK07478 short chain dehydroge 94.2 0.051 1.1E-06 48.8 3.9 37 164-200 3-39 (254)
340 PRK06194 hypothetical protein; 94.2 0.055 1.2E-06 49.5 4.2 37 164-200 3-39 (287)
341 PRK07035 short chain dehydroge 94.2 0.048 1E-06 48.8 3.7 37 164-200 5-41 (252)
342 PRK06200 2,3-dihydroxy-2,3-dih 94.2 0.048 1.1E-06 49.3 3.8 36 165-200 4-39 (263)
343 PRK14806 bifunctional cyclohex 94.2 0.06 1.3E-06 56.7 4.9 73 168-241 4-99 (735)
344 cd08293 PTGR2 Prostaglandin re 94.2 0.11 2.4E-06 48.7 6.3 90 151-240 137-255 (345)
345 PRK08936 glucose-1-dehydrogena 94.2 0.064 1.4E-06 48.4 4.5 37 164-200 4-40 (261)
346 PRK12826 3-ketoacyl-(acyl-carr 94.2 0.056 1.2E-06 47.9 4.1 36 165-200 4-39 (251)
347 PRK08644 thiamine biosynthesis 94.2 0.078 1.7E-06 47.7 5.0 35 164-199 25-60 (212)
348 KOG1198 Zinc-binding oxidoredu 94.2 0.26 5.6E-06 47.7 8.9 79 145-223 130-238 (347)
349 PRK07576 short chain dehydroge 94.2 0.059 1.3E-06 49.0 4.3 37 164-200 6-42 (264)
350 PRK07825 short chain dehydroge 94.1 0.051 1.1E-06 49.4 3.8 37 164-200 2-38 (273)
351 PRK12481 2-deoxy-D-gluconate 3 94.1 0.076 1.7E-06 47.9 4.9 36 164-199 5-40 (251)
352 PRK08277 D-mannonate oxidoredu 94.1 0.052 1.1E-06 49.5 3.8 38 163-200 6-43 (278)
353 cd05292 LDH_2 A subgroup of L- 94.1 0.11 2.5E-06 49.2 6.2 53 169-222 2-79 (308)
354 PRK06179 short chain dehydroge 94.1 0.12 2.5E-06 46.9 6.0 35 166-200 3-37 (270)
355 PLN02427 UDP-apiose/xylose syn 94.1 0.12 2.6E-06 49.8 6.5 58 162-219 9-95 (386)
356 PLN02896 cinnamyl-alcohol dehy 94.1 0.091 2E-06 50.0 5.6 59 162-220 5-89 (353)
357 PRK09291 short chain dehydroge 94.1 0.083 1.8E-06 47.3 5.0 34 167-200 2-35 (257)
358 PRK04308 murD UDP-N-acetylmura 94.1 0.14 2.9E-06 50.7 6.9 124 165-293 3-135 (445)
359 PRK12429 3-hydroxybutyrate deh 94.1 0.06 1.3E-06 48.0 4.0 36 165-200 2-37 (258)
360 PRK07634 pyrroline-5-carboxyla 94.1 0.12 2.6E-06 46.6 6.0 55 166-221 3-77 (245)
361 PRK07856 short chain dehydroge 94.0 0.092 2E-06 47.1 5.2 37 164-200 3-39 (252)
362 COG2910 Putative NADH-flavin r 94.0 0.12 2.7E-06 46.0 5.7 54 168-221 1-73 (211)
363 PRK08589 short chain dehydroge 94.0 0.063 1.4E-06 49.1 4.2 37 164-200 3-39 (272)
364 cd01492 Aos1_SUMO Ubiquitin ac 94.0 0.07 1.5E-06 47.4 4.3 35 164-199 18-53 (197)
365 PLN02662 cinnamyl-alcohol dehy 94.0 0.14 3E-06 47.6 6.5 34 166-199 3-36 (322)
366 PRK07067 sorbitol dehydrogenas 94.0 0.061 1.3E-06 48.4 4.0 36 165-200 4-39 (257)
367 PRK15182 Vi polysaccharide bio 94.0 0.087 1.9E-06 52.4 5.3 74 168-243 7-124 (425)
368 PRK06928 pyrroline-5-carboxyla 94.0 0.097 2.1E-06 48.8 5.3 69 169-238 3-97 (277)
369 PRK06500 short chain dehydroge 94.0 0.063 1.4E-06 47.7 3.9 36 165-200 4-39 (249)
370 cd08230 glucose_DH Glucose deh 94.0 0.1 2.2E-06 49.6 5.6 77 165-242 171-272 (355)
371 PF00899 ThiF: ThiF family; I 94.0 0.057 1.2E-06 44.6 3.4 32 167-199 2-34 (135)
372 PRK07814 short chain dehydroge 93.9 0.059 1.3E-06 48.9 3.8 37 164-200 7-43 (263)
373 TIGR01214 rmlD dTDP-4-dehydror 93.9 0.11 2.3E-06 47.5 5.5 52 169-220 1-60 (287)
374 PRK15181 Vi polysaccharide bio 93.9 0.15 3.3E-06 48.5 6.7 38 162-199 10-47 (348)
375 cd08239 THR_DH_like L-threonin 93.9 0.21 4.5E-06 46.9 7.5 94 146-241 144-264 (339)
376 TIGR01202 bchC 2-desacetyl-2-h 93.9 0.14 3.1E-06 47.9 6.3 76 165-241 143-233 (308)
377 PRK05653 fabG 3-ketoacyl-(acyl 93.9 0.094 2E-06 46.1 4.9 38 164-201 2-39 (246)
378 COG0604 Qor NADPH:quinone redu 93.9 0.13 2.9E-06 49.1 6.2 95 146-241 122-243 (326)
379 PRK06114 short chain dehydroge 93.9 0.1 2.2E-06 47.0 5.2 37 164-200 5-41 (254)
380 PRK06444 prephenate dehydrogen 93.9 0.12 2.5E-06 46.3 5.4 59 169-241 2-61 (197)
381 PLN00106 malate dehydrogenase 93.9 0.2 4.4E-06 48.1 7.4 57 166-222 17-98 (323)
382 TIGR03376 glycerol3P_DH glycer 93.8 0.11 2.3E-06 50.3 5.5 69 169-238 1-115 (342)
383 PLN00198 anthocyanidin reducta 93.8 0.17 3.7E-06 47.7 6.8 35 164-198 6-40 (338)
384 PRK08762 molybdopterin biosynt 93.8 0.081 1.8E-06 51.5 4.7 35 164-199 132-167 (376)
385 PRK05808 3-hydroxybutyryl-CoA 93.8 0.074 1.6E-06 49.4 4.2 31 168-199 4-34 (282)
386 PRK06139 short chain dehydroge 93.8 0.054 1.2E-06 51.7 3.4 37 164-200 4-40 (330)
387 PRK12742 oxidoreductase; Provi 93.8 0.098 2.1E-06 46.2 4.8 36 164-199 3-38 (237)
388 PRK07666 fabG 3-ketoacyl-(acyl 93.8 0.068 1.5E-06 47.4 3.8 37 165-201 5-41 (239)
389 PRK05565 fabG 3-ketoacyl-(acyl 93.7 0.086 1.9E-06 46.6 4.4 38 164-201 2-40 (247)
390 PRK05786 fabG 3-ketoacyl-(acyl 93.7 0.082 1.8E-06 46.7 4.2 37 164-200 2-38 (238)
391 PRK12939 short chain dehydroge 93.7 0.074 1.6E-06 47.2 3.9 37 164-200 4-40 (250)
392 PRK06598 aspartate-semialdehyd 93.7 0.15 3.3E-06 49.8 6.3 111 168-285 2-141 (369)
393 PLN02657 3,8-divinyl protochlo 93.7 0.12 2.6E-06 50.5 5.7 40 161-200 54-93 (390)
394 cd08281 liver_ADH_like1 Zinc-d 93.7 0.18 3.9E-06 48.3 6.8 94 147-241 172-292 (371)
395 cd05282 ETR_like 2-enoyl thioe 93.6 0.22 4.7E-06 45.8 7.1 95 147-241 119-239 (323)
396 cd08253 zeta_crystallin Zeta-c 93.6 0.32 6.9E-06 44.1 8.1 95 147-241 125-245 (325)
397 COG0677 WecC UDP-N-acetyl-D-ma 93.6 0.3 6.5E-06 48.1 8.1 157 58-238 230-419 (436)
398 PF13738 Pyr_redox_3: Pyridine 93.6 0.1 2.2E-06 45.1 4.5 37 164-201 164-200 (203)
399 cd05294 LDH-like_MDH_nadp A la 93.6 0.19 4.1E-06 47.7 6.7 54 168-222 1-84 (309)
400 cd05293 LDH_1 A subgroup of L- 93.6 0.2 4.3E-06 47.8 6.8 53 168-222 4-83 (312)
401 COG0039 Mdh Malate/lactate deh 93.6 0.18 4E-06 48.2 6.5 53 168-222 1-81 (313)
402 PRK05600 thiamine biosynthesis 93.6 0.11 2.4E-06 50.8 5.1 34 164-198 38-72 (370)
403 PRK08217 fabG 3-ketoacyl-(acyl 93.6 0.076 1.6E-06 47.1 3.7 36 165-200 3-38 (253)
404 PRK12823 benD 1,6-dihydroxycyc 93.5 0.12 2.5E-06 46.5 5.0 37 164-200 5-41 (260)
405 PRK05875 short chain dehydroge 93.5 0.074 1.6E-06 48.3 3.7 37 164-200 4-40 (276)
406 PRK07326 short chain dehydroge 93.5 0.077 1.7E-06 46.8 3.7 36 165-200 4-39 (237)
407 KOG0409 Predicted dehydrogenas 93.5 0.2 4.3E-06 47.7 6.5 77 163-240 31-131 (327)
408 PLN02695 GDP-D-mannose-3',5'-e 93.5 0.13 2.8E-06 49.7 5.4 54 166-219 20-94 (370)
409 PRK05557 fabG 3-ketoacyl-(acyl 93.5 0.13 2.8E-06 45.3 5.1 37 164-200 2-38 (248)
410 PRK05225 ketol-acid reductoiso 93.4 0.085 1.8E-06 52.9 4.1 76 165-241 34-134 (487)
411 PRK06198 short chain dehydroge 93.4 0.097 2.1E-06 47.0 4.2 38 164-201 3-41 (260)
412 PRK11064 wecC UDP-N-acetyl-D-m 93.4 0.53 1.1E-05 46.6 9.7 75 162-237 315-414 (415)
413 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.4 0.1 2.3E-06 52.9 4.8 32 168-200 6-37 (503)
414 PRK15182 Vi polysaccharide bio 93.4 0.51 1.1E-05 46.9 9.6 77 161-237 308-411 (425)
415 PRK06079 enoyl-(acyl carrier p 93.4 0.12 2.7E-06 46.7 4.9 36 165-200 5-42 (252)
416 TIGR03451 mycoS_dep_FDH mycoth 93.4 0.2 4.2E-06 47.8 6.4 94 147-241 157-278 (358)
417 PRK06505 enoyl-(acyl carrier p 93.4 0.12 2.6E-06 47.5 4.8 36 165-200 5-42 (271)
418 PRK12937 short chain dehydroge 93.4 0.14 3E-06 45.4 5.1 36 164-199 2-37 (245)
419 PLN02214 cinnamoyl-CoA reducta 93.4 0.2 4.4E-06 47.6 6.5 35 165-199 8-42 (342)
420 COG1004 Ugd Predicted UDP-gluc 93.4 0.38 8.1E-06 47.5 8.3 85 152-237 296-406 (414)
421 PRK07533 enoyl-(acyl carrier p 93.3 0.14 2.9E-06 46.6 5.1 38 163-200 6-45 (258)
422 PRK05597 molybdopterin biosynt 93.3 0.13 2.8E-06 49.9 5.1 34 164-198 25-59 (355)
423 PRK05086 malate dehydrogenase; 93.3 0.23 5E-06 47.3 6.8 55 168-222 1-81 (312)
424 TIGR03206 benzo_BadH 2-hydroxy 93.3 0.13 2.9E-06 45.6 4.9 36 165-200 1-36 (250)
425 PLN02778 3,5-epimerase/4-reduc 93.3 0.24 5.2E-06 46.4 6.8 54 167-220 9-67 (298)
426 PRK06197 short chain dehydroge 93.3 0.074 1.6E-06 49.5 3.3 37 164-200 13-49 (306)
427 COG0136 Asd Aspartate-semialde 93.3 0.28 6.1E-06 47.3 7.3 96 167-265 1-120 (334)
428 COG1004 Ugd Predicted UDP-gluc 93.3 0.17 3.8E-06 49.7 5.9 53 169-222 2-88 (414)
429 PRK08594 enoyl-(acyl carrier p 93.3 0.16 3.5E-06 46.2 5.5 36 164-199 4-41 (257)
430 PLN02253 xanthoxin dehydrogena 93.3 0.095 2.1E-06 47.8 4.0 37 164-200 15-51 (280)
431 PRK00683 murD UDP-N-acetylmura 93.3 0.21 4.5E-06 49.1 6.6 106 166-293 2-127 (418)
432 cd00300 LDH_like L-lactate deh 93.3 0.18 3.8E-06 47.7 5.9 51 170-222 1-78 (300)
433 PRK08268 3-hydroxy-acyl-CoA de 93.3 0.12 2.5E-06 52.6 4.9 32 168-200 8-39 (507)
434 PF03435 Saccharop_dh: Sacchar 93.2 0.096 2.1E-06 50.7 4.1 111 170-294 1-141 (386)
435 PRK12936 3-ketoacyl-(acyl-carr 93.2 0.11 2.3E-06 46.0 4.1 37 164-200 3-39 (245)
436 PRK08643 acetoin reductase; Va 93.2 0.1 2.2E-06 46.8 4.0 34 167-200 2-35 (256)
437 PRK07792 fabG 3-ketoacyl-(acyl 93.2 0.14 3E-06 47.9 5.1 39 162-200 7-45 (306)
438 PRK12827 short chain dehydroge 93.2 0.15 3.3E-06 45.0 5.0 35 164-198 3-37 (249)
439 PLN02353 probable UDP-glucose 93.2 0.44 9.5E-06 48.1 8.8 83 154-237 311-445 (473)
440 PLN03209 translocon at the inn 93.1 0.14 3.1E-06 52.8 5.3 36 165-200 78-113 (576)
441 PLN02819 lysine-ketoglutarate 93.1 0.14 3.1E-06 56.1 5.6 39 204-242 291-341 (1042)
442 PRK08278 short chain dehydroge 93.1 0.15 3.2E-06 46.7 4.9 37 164-200 3-39 (273)
443 PRK09135 pteridine reductase; 93.1 0.15 3.2E-06 45.1 4.8 36 165-200 4-39 (249)
444 KOG1502 Flavonol reductase/cin 93.1 0.25 5.3E-06 47.6 6.5 36 166-201 5-40 (327)
445 PRK08226 short chain dehydroge 93.0 0.16 3.4E-06 45.8 5.0 36 165-200 4-39 (263)
446 PRK06914 short chain dehydroge 93.0 0.14 3E-06 46.7 4.6 35 166-200 2-36 (280)
447 PRK12769 putative oxidoreducta 93.0 0.24 5.1E-06 51.7 6.9 35 165-200 325-359 (654)
448 PRK07109 short chain dehydroge 93.0 0.093 2E-06 50.0 3.6 37 164-200 5-41 (334)
449 cd01339 LDH-like_MDH L-lactate 93.0 0.21 4.6E-06 46.9 5.9 51 170-222 1-78 (300)
450 cd01487 E1_ThiF_like E1_ThiF_l 92.9 0.21 4.5E-06 43.5 5.4 30 169-199 1-31 (174)
451 PRK08642 fabG 3-ketoacyl-(acyl 92.9 0.17 3.7E-06 45.0 5.0 35 165-199 3-37 (253)
452 PRK07806 short chain dehydroge 92.9 0.17 3.8E-06 45.0 5.1 36 165-200 4-39 (248)
453 PRK06113 7-alpha-hydroxysteroi 92.9 0.12 2.5E-06 46.6 3.9 37 164-200 8-44 (255)
454 PRK05993 short chain dehydroge 92.9 0.13 2.7E-06 47.2 4.2 35 166-200 3-37 (277)
455 PRK07577 short chain dehydroge 92.9 0.18 4E-06 44.3 5.2 35 166-200 2-36 (234)
456 PF00185 OTCace: Aspartate/orn 92.9 0.24 5.3E-06 42.5 5.7 75 166-240 1-121 (158)
457 PRK14573 bifunctional D-alanyl 92.9 0.29 6.3E-06 52.4 7.5 119 168-293 5-129 (809)
458 PRK07677 short chain dehydroge 92.9 0.14 3E-06 46.0 4.4 34 167-200 1-34 (252)
459 PF00070 Pyr_redox: Pyridine n 92.9 0.2 4.2E-06 37.5 4.5 32 169-201 1-32 (80)
460 PLN02602 lactate dehydrogenase 92.8 0.28 6.1E-06 47.6 6.6 52 168-221 38-116 (350)
461 PRK06701 short chain dehydroge 92.8 0.16 3.4E-06 47.2 4.8 38 163-200 42-79 (290)
462 PRK08263 short chain dehydroge 92.8 0.22 4.8E-06 45.4 5.7 35 166-200 2-36 (275)
463 cd01338 MDH_choloroplast_like 92.8 0.28 6E-06 47.0 6.5 55 168-222 3-90 (322)
464 PRK12809 putative oxidoreducta 92.8 0.27 5.7E-06 51.3 6.9 34 166-200 309-342 (639)
465 COG2072 TrkA Predicted flavopr 92.8 0.15 3.2E-06 50.9 4.8 37 163-200 171-207 (443)
466 PRK06182 short chain dehydroge 92.8 0.14 3E-06 46.6 4.2 35 166-200 2-36 (273)
467 PLN00141 Tic62-NAD(P)-related 92.8 0.15 3.4E-06 46.0 4.5 36 164-199 14-49 (251)
468 PRK08303 short chain dehydroge 92.7 0.17 3.6E-06 47.7 4.9 37 164-200 5-41 (305)
469 PRK11880 pyrroline-5-carboxyla 92.7 0.26 5.5E-06 45.2 6.0 52 168-220 3-72 (267)
470 cd05290 LDH_3 A subgroup of L- 92.7 0.24 5.3E-06 47.1 6.0 53 169-222 1-80 (307)
471 PRK08267 short chain dehydroge 92.7 0.13 2.9E-06 46.2 4.0 33 168-200 2-34 (260)
472 PRK08945 putative oxoacyl-(acy 92.7 0.11 2.4E-06 46.3 3.5 37 164-200 9-45 (247)
473 cd01337 MDH_glyoxysomal_mitoch 92.7 0.25 5.4E-06 47.2 6.0 53 169-221 2-79 (310)
474 PLN02653 GDP-mannose 4,6-dehyd 92.7 0.2 4.4E-06 47.2 5.4 36 164-199 3-38 (340)
475 TIGR01082 murC UDP-N-acetylmur 92.6 0.37 8E-06 47.8 7.4 118 169-293 1-124 (448)
476 TIGR02622 CDP_4_6_dhtase CDP-g 92.6 0.21 4.5E-06 47.4 5.4 36 165-200 2-37 (349)
477 PRK07985 oxidoreductase; Provi 92.6 0.19 4.1E-06 46.7 5.0 36 164-199 46-81 (294)
478 PRK12744 short chain dehydroge 92.5 0.18 3.9E-06 45.4 4.6 35 164-198 5-39 (257)
479 PRK07878 molybdopterin biosynt 92.5 0.18 3.9E-06 49.5 4.9 33 165-198 40-73 (392)
480 PLN02730 enoyl-[acyl-carrier-p 92.5 0.22 4.7E-06 47.2 5.3 36 162-197 4-41 (303)
481 PRK05442 malate dehydrogenase; 92.5 0.31 6.6E-06 46.9 6.3 55 168-222 5-92 (326)
482 TIGR03466 HpnA hopanoid-associ 92.5 0.23 4.9E-06 45.9 5.3 52 168-219 1-73 (328)
483 PRK06720 hypothetical protein; 92.4 0.16 3.6E-06 43.9 4.1 40 163-202 12-51 (169)
484 PRK12779 putative bifunctional 92.4 0.22 4.7E-06 54.4 5.8 35 165-200 304-338 (944)
485 PRK08993 2-deoxy-D-gluconate 3 92.4 0.21 4.5E-06 45.0 4.9 36 164-199 7-42 (253)
486 PRK07411 hypothetical protein; 92.4 0.19 4.1E-06 49.3 5.0 34 164-198 35-69 (390)
487 PRK07984 enoyl-(acyl carrier p 92.4 0.18 3.9E-06 46.2 4.5 36 165-200 4-41 (262)
488 PRK07791 short chain dehydroge 92.4 0.17 3.7E-06 46.9 4.4 35 165-199 4-38 (286)
489 PRK07831 short chain dehydroge 92.4 0.19 4.2E-06 45.3 4.7 37 164-200 14-51 (262)
490 KOG1504 Ornithine carbamoyltra 92.4 0.3 6.5E-06 45.6 5.8 102 116-218 139-266 (346)
491 PLN02740 Alcohol dehydrogenase 92.4 0.32 6.9E-06 46.9 6.4 94 147-241 179-302 (381)
492 PRK12743 oxidoreductase; Provi 92.3 0.21 4.6E-06 44.9 4.9 33 167-199 2-34 (256)
493 cd08290 ETR 2-enoyl thioester 92.3 0.43 9.3E-06 44.5 7.1 95 147-241 127-253 (341)
494 PRK08177 short chain dehydroge 92.3 0.25 5.3E-06 43.6 5.2 34 168-201 2-35 (225)
495 PLN03154 putative allyl alcoho 92.3 0.4 8.8E-06 45.7 7.0 52 147-198 139-190 (348)
496 PRK06128 oxidoreductase; Provi 92.3 0.22 4.7E-06 46.3 5.0 35 164-198 52-86 (300)
497 TIGR01777 yfcH conserved hypot 92.3 0.27 5.9E-06 44.6 5.6 52 170-221 1-68 (292)
498 PRK12557 H(2)-dependent methyl 92.3 0.19 4.2E-06 48.5 4.7 83 147-240 28-117 (342)
499 cd01483 E1_enzyme_family Super 92.2 0.16 3.5E-06 42.2 3.6 30 169-199 1-31 (143)
500 PRK06483 dihydromonapterin red 92.2 0.2 4.4E-06 44.4 4.5 35 167-201 2-36 (236)
No 1
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=100.00 E-value=1e-96 Score=678.18 Aligned_cols=281 Identities=58% Similarity=0.902 Sum_probs=273.9
Q ss_pred eeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHH
Q 022295 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV 89 (299)
Q Consensus 10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i 89 (299)
++||||++|+++++++++++++|+++.++.|+|++|+||+||+|+.|+++|.|+|+++|+.++.++||++++|+||++.|
T Consensus 1 ~~idGk~lA~~i~~~lk~~v~~~~~~~~~~P~LavilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I 80 (283)
T COG0190 1 MIIDGKALAEKIREELKEKVEALKAKGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALI 80 (283)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHH
Confidence 47999999999999999999999987789999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcE
Q 022295 90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKR 169 (299)
Q Consensus 90 ~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~ 169 (299)
++||+|++|||||||+|||+|+|+++++++|+|+||||||||+|.|+|+.+ +++|+||||.|++++|++|++++.||+
T Consensus 81 ~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~--~~~~~PCTp~gi~~ll~~~~i~l~Gk~ 158 (283)
T COG0190 81 DELNADPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQG--EPGFLPCTPAGIMTLLEEYGIDLRGKN 158 (283)
T ss_pred HHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcC--CCCCCCCCHHHHHHHHHHhCCCCCCCE
Confidence 999999999999999999999999999999999999999999999999987 788999999999999999999999999
Q ss_pred EEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCccC
Q 022295 170 AVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK 249 (299)
Q Consensus 170 vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~~~ 249 (299)
++|||||++||||++++|+++|||||+|||+|+|+.+++++|||||+|+|+|+|+++||+|||++|||+|+|+.++.
T Consensus 159 ~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~~l~~~~k~ADIvv~AvG~p~~i~~d~vk~gavVIDVGinrv~~~--- 235 (283)
T COG0190 159 VVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLASITKNADIVVVAVGKPHFIKADMVKPGAVVIDVGINRVNDG--- 235 (283)
T ss_pred EEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCCCHHHHhhhCCEEEEecCCccccccccccCCCEEEecCCccccCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998652
Q ss_pred CCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295 250 SGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298 (299)
Q Consensus 250 ~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~ 298 (299)
|+||||||+++++++++||||||||||||++|||+|++++++++.+
T Consensus 236 ---kl~GDVdf~~v~~~a~~iTPVPGGVGPmTvamLl~Nt~~a~~~~~~ 281 (283)
T COG0190 236 ---KLVGDVDFDSVKEKASAITPVPGGVGPMTVAMLLENTLKAAERQRG 281 (283)
T ss_pred ---ceEeeccHHHHHHhhcccCCCCCccCHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999999999998754
No 2
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=100.00 E-value=2.5e-96 Score=685.49 Aligned_cols=298 Identities=86% Similarity=1.277 Sum_probs=285.0
Q ss_pred CCCCccccceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCC
Q 022295 1 MAAPSDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQV 80 (299)
Q Consensus 1 ~~~~~~~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~ 80 (299)
|+.|...|+++||||++|++|++++++++++|+++.|++|+|++|+||+||+|..|+++|.|+|+++||+++.++||+++
T Consensus 1 ~~~~~~~~~~ildGk~vA~~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~ 80 (299)
T PLN02516 1 MASPSDHVAQIIDGKAIAKAIRSEIAEEVAQLSEKHGKVPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENI 80 (299)
T ss_pred CCCCccccCeEeehHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC
Confidence 78899999999999999999999999999999888789999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHh
Q 022295 81 SEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKR 160 (299)
Q Consensus 81 ~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~ 160 (299)
+|+||++.|++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|+|+|+.|+..++|+||||+||+++|++
T Consensus 81 s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~ 160 (299)
T PLN02516 81 SEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLEKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSR 160 (299)
T ss_pred CHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCcccccCccCHhhHhhHhcCCCCCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998643578999999999999999
Q ss_pred hCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeec
Q 022295 161 SGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGT 240 (299)
Q Consensus 161 ~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~ 240 (299)
|+++++||+|+|||||.+||||+++||+++|||||+|||+|+++++++++|||||+|+|+|++++++|||||++|||+|+
T Consensus 161 ~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T~nl~~~~~~ADIvv~AvGk~~~i~~~~vk~gavVIDvGi 240 (299)
T PLN02516 161 SGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTPDPESIVREADIVIAAAGQAMMIKGDWIKPGAAVIDVGT 240 (299)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCCEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295 241 NAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298 (299)
Q Consensus 241 ~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~ 298 (299)
|+.+++..++|.++||||||+++.++++++|||||||||||++|||+|+++++++|+.
T Consensus 241 n~~~~~~~~~g~kl~GDvd~e~v~~~a~~iTPVPGGVGp~T~a~L~~N~v~a~~~~~~ 298 (299)
T PLN02516 241 NAVSDPSKKSGYRLVGDVDFAEVSKVAGWITPVPGGVGPMTVAMLLKNTVDGAKRVFA 298 (299)
T ss_pred cccCcccccCCCceEcCcChHHhhhhceEecCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence 9975432223447999999999999999999999999999999999999999999974
No 3
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=100.00 E-value=1.8e-96 Score=697.37 Aligned_cols=293 Identities=64% Similarity=1.070 Sum_probs=279.6
Q ss_pred cccceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHH
Q 022295 6 DQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAEL 85 (299)
Q Consensus 6 ~~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el 85 (299)
.+++++||||++|++|++++++++++|+++.|++|+||+|+||+||+|..|+++|.|+|+++||+++.++||++++|+||
T Consensus 70 ~~~~~ildGk~iA~~i~~~lk~~v~~lk~~~g~~P~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe~~te~el 149 (364)
T PLN02616 70 EGGAKVIDGKAVAKKIRDEITIEVSRMKESIGVVPGLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEV 149 (364)
T ss_pred cccCeEeEhHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 44678999999999999999999999998878999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCc
Q 022295 86 ISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTI 165 (299)
Q Consensus 86 ~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l 165 (299)
++.|++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|+|+|+.|+..++|+||||+||+++|++|++++
T Consensus 150 l~~I~~LN~D~~V~GIlVQlPLP~~id~~~i~~aI~P~KDVDGl~p~N~G~L~~g~~~~~f~PCTp~avielL~~y~i~l 229 (364)
T PLN02616 150 LKFISGFNNDPSVHGILVQLPLPSHMDEQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYNVEI 229 (364)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhcCCCCCCCCCCCHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999864457899999999999999999999
Q ss_pred CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCC
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD 245 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~ 245 (299)
+||+|+|||||++||+|+++||+++|||||+|||+|+|+.+++++|||||+|+|+|++|+++|||||++|||+|+|+.++
T Consensus 230 ~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T~nl~~~~r~ADIVIsAvGkp~~i~~d~vK~GAvVIDVGIn~~~~ 309 (364)
T PLN02616 230 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITREADIIISAVGQPNMVRGSWIKPGAVVIDVGINPVED 309 (364)
T ss_pred CCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCCCCHHHHHhhCCEEEEcCCCcCcCCHHHcCCCCEEEecccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred CccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295 246 STKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298 (299)
Q Consensus 246 ~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~ 298 (299)
+++++|+|+||||||+++.+++++||||||||||||++|||+|++++++++.+
T Consensus 310 ~~~~~g~klvGDVdfe~v~~~as~ITPVPGGVGpmTva~Ll~N~~~aa~~~~~ 362 (364)
T PLN02616 310 ASSPRGYRLVGDVCYEEACKVASAVTPVPGGVGPMTIAMLLSNTLTSAKRIHN 362 (364)
T ss_pred ccccCCCeEEecCcHHHHHhhccccCCCCCchHHHHHHHHHHHHHHHHHHhhc
Confidence 33333558999999999999999999999999999999999999999988764
No 4
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=100.00 E-value=2.5e-96 Score=693.89 Aligned_cols=292 Identities=62% Similarity=1.027 Sum_probs=279.1
Q ss_pred cccceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHH
Q 022295 6 DQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAEL 85 (299)
Q Consensus 6 ~~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el 85 (299)
.+|+++||||++|++|+++++++++.|+++.+++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||
T Consensus 53 ~~~~~ildGk~vA~~i~~~lk~~v~~l~~~~g~~P~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~el 132 (345)
T PLN02897 53 EQKTVVIDGNVIAEEIRTKIASEVRKMKKAVGKVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQI 132 (345)
T ss_pred cccceEeehHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHH
Confidence 34688999999999999999999999988778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCc
Q 022295 86 ISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTI 165 (299)
Q Consensus 86 ~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l 165 (299)
++.|++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|+|+|+.|+..++|+||||+||+++|++|++++
T Consensus 133 l~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~KDVDGl~p~N~G~L~~~~~~~~~~PCTp~avi~LL~~~~i~l 212 (345)
T PLN02897 133 LSALRKFNEDTSIHGILVQLPLPQHLDESKILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIRSGVEI 212 (345)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCccCCCHHHHHHHhcCCCCCCCcCCCHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999864447899999999999999999999
Q ss_pred CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCC
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD 245 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~ 245 (299)
+||+|+|||||++||+|+|+||+++|||||+||++|+|+.+++++|||||+|+|+|++|+++|||||++|||+|+|+.++
T Consensus 213 ~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T~nl~~~~~~ADIvIsAvGkp~~v~~d~vk~GavVIDVGin~~~~ 292 (345)
T PLN02897 213 AGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEQITRKADIVIAAAGIPNLVRGSWLKPGAVVIDVGTTPVED 292 (345)
T ss_pred CCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred CccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295 246 STKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI 297 (299)
Q Consensus 246 ~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~ 297 (299)
++.++|+|++|||||+++.+++++||||||||||||++|||+|+++++++|.
T Consensus 293 ~~~~~g~klvGDVdfe~v~~~as~iTPVPGGVGpmTvamLm~N~~~a~~~~~ 344 (345)
T PLN02897 293 SSCEFGYRLVGDVCYEEALGVASAITPVPGGVGPMTITMLLCNTLDAAKRIF 344 (345)
T ss_pred ccccCCCeeEecccHHHHHhhccccCCCCCchhHHHHHHHHHHHHHHHHHhc
Confidence 3333355899999999999999999999999999999999999999999885
No 5
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=5.3e-96 Score=680.23 Aligned_cols=283 Identities=43% Similarity=0.739 Sum_probs=273.9
Q ss_pred cceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHH
Q 022295 8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS 87 (299)
Q Consensus 8 ~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 87 (299)
|+++||||++|++|++++++++++|+++.+++|+||+|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++
T Consensus 1 ~~~il~Gk~iA~~i~~~lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~ 80 (288)
T PRK14171 1 MNNIIDGKALANEILADLKLEIQELKSQTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLIS 80 (288)
T ss_pred CCeEeeHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 57899999999999999999999998877899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCC
Q 022295 88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKG 167 (299)
Q Consensus 88 ~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~g 167 (299)
.|++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|+|+|+.|+ .++|+||||+||+++|++|+++++|
T Consensus 81 ~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~g~-~~~~~PcTp~av~~lL~~y~i~l~G 159 (288)
T PRK14171 81 KINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPSKDIDGFHPLNVGYLHSGI-SQGFIPCTALGCLAVIKKYEPNLTG 159 (288)
T ss_pred HHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccccCCccchhhhhcCC-CCCCcCCCHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999999999999999999999999873 3789999999999999999999999
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCc
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDST 247 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~ 247 (299)
|+|+|||||++||+|+++||+++|||||+|||+|+|+++++++|||||+|+|+|++|+++|||||++|||+|+|+..+
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~~ATVtichs~T~~L~~~~~~ADIvV~AvGkp~~i~~~~vk~GavVIDvGin~~~~-- 237 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTHNLSSITSKADIVVAAIGSPLKLTAEYFNPESIVIDVGINRISG-- 237 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCCCccCHHHcCCCCEEEEeeccccCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999643
Q ss_pred cCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295 248 KKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI 297 (299)
Q Consensus 248 ~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~ 297 (299)
| |++|||||+++++++++||||||||||||++|||+|+++++++.+
T Consensus 238 ---g-kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~v~a~~~~~ 283 (288)
T PRK14171 238 ---N-KIIGDVDFENVKSKVKYITPVPGGIGPMTIAFLLKNTVKAFKDSL 283 (288)
T ss_pred ---C-CeECCccHHHHHhhceEeCCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 2 799999999999999999999999999999999999999998654
No 6
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.2e-95 Score=676.78 Aligned_cols=282 Identities=55% Similarity=0.891 Sum_probs=274.0
Q ss_pred cceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHH
Q 022295 8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS 87 (299)
Q Consensus 8 ~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 87 (299)
|+++|+||++|++++++++++++.|+++ |++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++
T Consensus 1 ~~~il~Gk~iA~~i~~~ik~~i~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~ 79 (284)
T PRK14170 1 MGEIIDGKKLAKEIQEKVTREVAELVKE-GKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLS 79 (284)
T ss_pred CCeEEEhHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 6889999999999999999999999877 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCC
Q 022295 88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKG 167 (299)
Q Consensus 88 ~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~g 167 (299)
.|++||+|++||||+||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.| .++|+||||+||+++|++|+++++|
T Consensus 80 ~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~p~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i~l~G 157 (284)
T PRK14170 80 VVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFIG--KDSFVPCTPAGIIELIKSTGTQIEG 157 (284)
T ss_pred HHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcccCcccCChhhhhHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999987 5789999999999999999999999
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCc
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDST 247 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~ 247 (299)
|+|+|||||++||+|+++||+++|||||+|||+|+|+++++++|||||+|+|+|++|+++|||||++|||+|+|+.++
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~AvG~~~~i~~~~vk~GavVIDvGin~~~~-- 235 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKDYIKPGAIVIDVGMDRDEN-- 235 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEEccCcccCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998643
Q ss_pred cCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295 248 KKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298 (299)
Q Consensus 248 ~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~ 298 (299)
| |++|||||+++.++++++|||||||||||++|||+|+++++++++.
T Consensus 236 ---g-kl~GDvdfe~~~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~ 282 (284)
T PRK14170 236 ---N-KLCGDVDFDDVVEEAGFITPVPGGVGPMTITMLLANTLKAAKRIWK 282 (284)
T ss_pred ---C-CeecccchHHHHhhccEecCCCCChHHHHHHHHHHHHHHHHHHHhh
Confidence 2 7999999999999999999999999999999999999999998764
No 7
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.1e-95 Score=679.26 Aligned_cols=293 Identities=49% Similarity=0.801 Sum_probs=277.7
Q ss_pred ccceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHH
Q 022295 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI 86 (299)
Q Consensus 7 ~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~ 86 (299)
||+++||||++|++|+++++++++.|+++.|++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||+
T Consensus 1 m~~~ildGk~iA~~i~~~lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~ 80 (297)
T PRK14168 1 MSAKIIKGTEIREEILEEIRGEVAELKEKYGKVPGLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELL 80 (297)
T ss_pred CCCeEeeHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 45779999999999999999999999887789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcC
Q 022295 87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIK 166 (299)
Q Consensus 87 ~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~ 166 (299)
+.|++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|+|+|+.|+..++|+||||+||+++|++|+++++
T Consensus 81 ~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~~i~l~ 160 (297)
T PRK14168 81 ALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPDKDVDGFHPVNVGRLMIGGDEVKFLPCTPAGIQEMLVRSGVETS 160 (297)
T ss_pred HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhHHHHhcCCCCCCCcCCCHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999998854468999999999999999999999
Q ss_pred CcEEEEEcCCccchHHHHHHHhhC----CCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccC
Q 022295 167 GKRAVVVGRSNIVGLPVSLLLLKA----DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNA 242 (299)
Q Consensus 167 gk~vvViG~s~~vG~pla~lL~~~----gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~ 242 (299)
||+|+|||||++||+|+++||+++ |||||+|||+|+++++++++|||||+|+|+|++++++|||||++|||+|+|+
T Consensus 161 Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~gavVIDvGin~ 240 (297)
T PRK14168 161 GAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRSKNLARHCQRADILIVAAGVPNLVKPEWIKPGATVIDVGVNR 240 (297)
T ss_pred CCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCCcCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEecCCCc
Confidence 999999999999999999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhcC
Q 022295 243 VDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIEL 299 (299)
Q Consensus 243 ~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~~ 299 (299)
..+....++++++|||||+++.+++++||||||||||||++|||+|+++++++|++|
T Consensus 241 ~~~~~~~g~~~~~GDVdfe~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~~~ 297 (297)
T PRK14168 241 VGTNESTGKAILSGDVDFDAVKEIAGKITPVPGGVGPMTIAMLMRNTLKSAKFHLSL 297 (297)
T ss_pred cCccccCCCcceeccccHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHHhCC
Confidence 632111111249999999999999999999999999999999999999999999986
No 8
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=4.1e-95 Score=675.70 Aligned_cols=286 Identities=50% Similarity=0.804 Sum_probs=274.1
Q ss_pred eeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHH
Q 022295 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV 89 (299)
Q Consensus 10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i 89 (299)
++||||++|++|+++++++++.|+++.+++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++.|
T Consensus 2 ~ildGk~iA~~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I 81 (293)
T PRK14185 2 QLIDGKAISAQIKQEIAAEVAEIVAKGGKRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKV 81 (293)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 48999999999999999999999988789999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcE
Q 022295 90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKR 169 (299)
Q Consensus 90 ~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~ 169 (299)
++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|+|+|+.| .++|+||||+||+++|++|+++++||+
T Consensus 82 ~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~av~~lL~~~~i~l~GK~ 159 (293)
T PRK14185 82 RELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYRKDVDGFHPINVGRMSIG--LPCFVSATPNGILELLKRYHIETSGKK 159 (293)
T ss_pred HHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcccCcCCCCHhhHHHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCE
Confidence 999999999999999999999999999999999999999999999999987 578999999999999999999999999
Q ss_pred EEEEcCCccchHHHHHHHhhC----CCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCC
Q 022295 170 AVVVGRSNIVGLPVSLLLLKA----DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD 245 (299)
Q Consensus 170 vvViG~s~~vG~pla~lL~~~----gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~ 245 (299)
|+|||||++||+|+++||+++ |||||+|||+|+|+.+++++|||||+|+|+|++|+++|||||++|||+|+|+.++
T Consensus 160 vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~nl~~~~~~ADIvIsAvGkp~~i~~~~vk~gavVIDvGin~~~~ 239 (293)
T PRK14185 160 CVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRSKNLKKECLEADIIIAALGQPEFVKADMVKEGAVVIDVGTTRVPD 239 (293)
T ss_pred EEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecCccccc
Confidence 999999999999999999998 7999999999999999999999999999999999999999999999999999754
Q ss_pred CccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295 246 STKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI 297 (299)
Q Consensus 246 ~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~ 297 (299)
+..++|+|++|||||+++.+++++||||||||||||++|||+|+++++++..
T Consensus 240 ~~~~~g~klvGDVdf~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~ 291 (293)
T PRK14185 240 ATRKSGFKLTGDVKFDEVAPKCSYITPVPGGVGPMTIVSLMKNTLLAGKKAI 291 (293)
T ss_pred ccccCCCeeEcCCCHHHHHhhccEeCCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 3333344899999999999999999999999999999999999999998654
No 9
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=6.5e-95 Score=674.60 Aligned_cols=287 Identities=46% Similarity=0.720 Sum_probs=274.8
Q ss_pred cceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHH
Q 022295 8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS 87 (299)
Q Consensus 8 ~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 87 (299)
|+++||||++|++|+++++++++.|++++|++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+|+++
T Consensus 1 ~~~ildGk~va~~i~~~lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~ 80 (294)
T PRK14187 1 ETNIIDGKKIANDITEILATCIDDLKRQHNLFPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIE 80 (294)
T ss_pred CcEEeehHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 57899999999999999999999998777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCC
Q 022295 88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKG 167 (299)
Q Consensus 88 ~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~g 167 (299)
.|++||+|++|||||||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.|+..++|+||||+||+++|++|+++++|
T Consensus 81 ~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~~PcTp~avi~lL~~~~i~l~G 160 (294)
T PRK14187 81 KINELNNDDSVHGILVQLPVPNHIDKNLIINTIDPEKDVDGFHNENVGRLFTGQKKNCLIPCTPKGCLYLIKTITRNLSG 160 (294)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhCCCCCCCccCcCHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999988533689999999999999999999999
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCc
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDST 247 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~ 247 (299)
|+|+|||||++||+|+++||+++|||||+|||+|+|+.+++++|||||+|+|+|+|++++|||+|++|||+|+|+.+++.
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~gaiVIDVGin~~~~~~ 240 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGENCTVTTVHSATRDLADYCSKADILVAAVGIPNFVKYSWIKKGAIVIDVGINSIEEGG 240 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999964321
Q ss_pred cCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295 248 KKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI 297 (299)
Q Consensus 248 ~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~ 297 (299)
.+|++|||||+++.++++++|||||||||||++|||+|++++++++.
T Consensus 241 ---~~kl~GDvd~e~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~ 287 (294)
T PRK14187 241 ---VKKFVGDVDFAEVKKKASAITPVPGGVGPMTIAFLMVNTVIAACNQK 287 (294)
T ss_pred ---ccceeCCccHHHHhhhccEecCCCCCChHHHHHHHHHHHHHHHHHhh
Confidence 01699999999999999999999999999999999999999998754
No 10
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=9.3e-95 Score=671.74 Aligned_cols=283 Identities=52% Similarity=0.826 Sum_probs=275.1
Q ss_pred ccceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHH
Q 022295 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI 86 (299)
Q Consensus 7 ~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~ 86 (299)
||+.+|+||++|+++++++++++++|+++ |++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||+
T Consensus 1 ~~~~il~Gk~vA~~i~~~l~~~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~ 79 (284)
T PRK14190 1 MMAVIIDGKEVAKEKREQLKEEVVKLKEQ-GIVPGLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELL 79 (284)
T ss_pred CCCeEeeHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 57789999999999999999999999877 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcC
Q 022295 87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIK 166 (299)
Q Consensus 87 ~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~ 166 (299)
+.|++||+|++|||||||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.| .++|+||||+||+++|++|+++++
T Consensus 80 ~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~lL~~~~i~l~ 157 (284)
T PRK14190 80 ALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPEKDVDGFHPINVGRMMLG--QDTFLPCTPHGILELLKEYNIDIS 157 (284)
T ss_pred HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccCHhhHHHHhcC--CCCCCCCCHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999999999999999999999999988 578999999999999999999999
Q ss_pred CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCC
Q 022295 167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDS 246 (299)
Q Consensus 167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~ 246 (299)
||+|+|||||++||+|+++||+++|||||+||++|+++.+++++|||||+|+|+|++|+++|+|||++|||+|+|+.+++
T Consensus 158 Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~~l~~~~~~ADIvI~AvG~p~~i~~~~ik~gavVIDvGi~~~~~g 237 (284)
T PRK14190 158 GKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLAELTKQADILIVAVGKPKLITADMVKEGAVVIDVGVNRLENG 237 (284)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCchhHHHHHHhCCEEEEecCCCCcCCHHHcCCCCEEEEeeccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997542
Q ss_pred ccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295 247 TKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298 (299)
Q Consensus 247 ~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~ 298 (299)
|++|||||+++.+++++||||||||||||++|||+|+++++++|.+
T Consensus 238 ------kl~GDvd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~ 283 (284)
T PRK14190 238 ------KLCGDVDFDNVKEKASYITPVPGGVGPMTITMLMHNTVELAKRAGG 283 (284)
T ss_pred ------CeeccCcHHHHhhhceEecCCCCCChHHHHHHHHHHHHHHHHHhhc
Confidence 7999999999999999999999999999999999999999998864
No 11
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.2e-94 Score=669.45 Aligned_cols=280 Identities=53% Similarity=0.837 Sum_probs=271.3
Q ss_pred eeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHH
Q 022295 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV 89 (299)
Q Consensus 10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i 89 (299)
++||||++|++++++++++++.|+++ |++|+||+|+||+||+|..|+++|.|+|+++||+++.++||++++|+|+++.|
T Consensus 2 ~ildGk~iA~~i~~~ik~~v~~l~~~-g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I 80 (282)
T PRK14182 2 NLIDGKQIAAKVKGEVATEVRALAAR-GVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALI 80 (282)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 48999999999999999999999877 89999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCc-cccCCHHHHHHHHHhhCCCcCCc
Q 022295 90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPL-FLPCTPKGCLELLKRSGVTIKGK 168 (299)
Q Consensus 90 ~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~-~~PcT~~av~~ll~~~~~~l~gk 168 (299)
++||+|++|||||||+|||+|+|+.+++++|+|+|||||+|+.|+|+|+.| ..+ |+||||+||+++|++|+++++||
T Consensus 81 ~~lN~d~~V~GIivqlPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~~PcTp~avi~ll~~~~i~l~Gk 158 (282)
T PRK14182 81 ARLNADPAVHGILVQLPLPKHVDERAVLDAISPAKDADGFHPFNVGALSIG--IAGVPRPCTPAGVMRMLDEARVDPKGK 158 (282)
T ss_pred HHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcCCCCHhHHHHHhCC--CCCCCCCCCHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999999999999999999999999999999988 345 89999999999999999999999
Q ss_pred EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCcc
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~~ 248 (299)
+|+|||||++||+|+++||+++|||||+|||+|+++++++++|||||+|+|+|++++++|||+|++|||+|+|+..++
T Consensus 159 ~vvViGrS~iVGkPla~lL~~~~AtVtichs~T~nl~~~~~~ADIvI~AvGk~~~i~~~~ik~gaiVIDvGin~~~~g-- 236 (282)
T PRK14182 159 RALVVGRSNIVGKPMAMMLLERHATVTIAHSRTADLAGEVGRADILVAAIGKAELVKGAWVKEGAVVIDVGMNRLADG-- 236 (282)
T ss_pred EEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEEeeceecCCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999996442
Q ss_pred CCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298 (299)
Q Consensus 249 ~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~ 298 (299)
+++|||||+++.++++++|||||||||||++|||+|+++++++|.+
T Consensus 237 ----kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~~~~~~~~ 282 (282)
T PRK14182 237 ----KLVGDVEFAAAAARASAITPVPGGVGPMTRAMLLVNTVELAKRTAR 282 (282)
T ss_pred ----CeeCCCCHHHHHhhccEecCCCCCChHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999998853
No 12
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.4e-94 Score=669.47 Aligned_cols=280 Identities=44% Similarity=0.731 Sum_probs=272.0
Q ss_pred ceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHH
Q 022295 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISK 88 (299)
Q Consensus 9 ~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~ 88 (299)
+.+||||++|++++++++++++.|+++ |++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++.
T Consensus 1 ~~il~Gk~va~~i~~~l~~~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~ 79 (282)
T PRK14169 1 ATRLDGRAVSKKILADLKQTVAKLAQQ-DVTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAK 79 (282)
T ss_pred CeeeehHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 468999999999999999999999877 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCc
Q 022295 89 VHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGK 168 (299)
Q Consensus 89 i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk 168 (299)
|++||+|++|||||||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.+ .++|+||||+||+++|++|+++++||
T Consensus 80 I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i~l~Gk 157 (282)
T PRK14169 80 VAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPDKDVDGFSPVSVGRLWAN--EPTVVASTPYGIMALLDAYDIDVAGK 157 (282)
T ss_pred HHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhhHHHhcC--CCCCCCCCHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999987 57899999999999999999999999
Q ss_pred EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCcc
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~~ 248 (299)
+|+|||||++||+|+++||+++|||||+|||+|+|+++++++|||||+|+|+|+||+++|+|+|++|||+|+|+..++
T Consensus 158 ~vvViGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~AvG~p~~i~~~~vk~GavVIDvGin~~~~g-- 235 (282)
T PRK14169 158 RVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTRNLKQLTKEADILVVAVGVPHFIGADAVKPGAVVIDVGISRGADG-- 235 (282)
T ss_pred EEEEECCCccchHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCcEEEEeeccccCCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999996442
Q ss_pred CCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI 297 (299)
Q Consensus 249 ~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~ 297 (299)
+++|||||+++.+++++||||||||||||++|||+|++++++++.
T Consensus 236 ----kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~ 280 (282)
T PRK14169 236 ----KLLGDVDEAAVAPIASAITPVPGGVGPMTIASLMAQTVTLAKRRA 280 (282)
T ss_pred ----CeeecCcHHHHHhhccEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 799999999999999999999999999999999999999998754
No 13
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.1e-94 Score=669.01 Aligned_cols=278 Identities=41% Similarity=0.700 Sum_probs=268.7
Q ss_pred cceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHH
Q 022295 8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS 87 (299)
Q Consensus 8 ~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 87 (299)
|+++||||++|+++++++++++++|+++...+|+|++|++|+||+|..|+++|.|+|+++||+++.++||++++|+||++
T Consensus 1 ~~~ildGk~iA~~i~~~lk~~i~~l~~~g~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~ 80 (278)
T PRK14172 1 MGQIINGKEVALKIKEEIKNFVEERKENGLSIPKIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLIN 80 (278)
T ss_pred CCeEEeHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 57899999999999999999999998773256999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCC
Q 022295 88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKG 167 (299)
Q Consensus 88 ~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~g 167 (299)
.|++||+|++|||||||+|||+|+|+++++++|+|+|||||+|+.|.|+++.| .++|+||||+||+++|++|+++++|
T Consensus 81 ~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~av~~lL~~~~i~l~G 158 (278)
T PRK14172 81 EIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDANKDIDCLTFISVGKFYKG--EKCFLPCTPNSVITLIKSLNIDIEG 158 (278)
T ss_pred HHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccccCccCHhhHHHHhCC--CCCCcCCCHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999988 5789999999999999999999999
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCc
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDST 247 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~ 247 (299)
|+|+|||||.+||+|+++||+++|||||+|||+|+++.+++++|||||+|+|+|++++++|+|||++|||+|+|+.++
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gavVIDvGin~~~g-- 236 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKNLKEVCKKADILVVAIGRPKFIDEEYVKEGAIVIDVGTSSVNG-- 236 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCcEEEEeeccccCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999632
Q ss_pred cCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHH
Q 022295 248 KKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAK 294 (299)
Q Consensus 248 ~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~ 294 (299)
+++|||||+++.+++++||||||||||||++|||+|++++++
T Consensus 237 -----kl~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~ 278 (278)
T PRK14172 237 -----KITGDVNFDKVIDKASYITPVPGGVGSLTTTLLIKNVCEALK 278 (278)
T ss_pred -----ceeeeccHHHHHhhccEecCCCCCccHHHHHHHHHHHHHhcC
Confidence 799999999999999999999999999999999999999864
No 14
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.7e-94 Score=673.18 Aligned_cols=287 Identities=49% Similarity=0.807 Sum_probs=274.5
Q ss_pred cceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHH
Q 022295 8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS 87 (299)
Q Consensus 8 ~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 87 (299)
|+++||||++|+++++++++++++|+++ |++|+||+|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++
T Consensus 1 ~~~il~Gk~vA~~i~~~l~~~v~~l~~~-g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 79 (297)
T PRK14167 1 MTEIIDGNAVAAQIRDDLTDAIETLEDA-GVTPGLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYD 79 (297)
T ss_pred CCeEEeHHHHHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 6789999999999999999999999876 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCC
Q 022295 88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKG 167 (299)
Q Consensus 88 ~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~g 167 (299)
.|++||+|++|||||||+|||+|+|+++++++|+|+|||||+|+.|.|+|+.| .++|+||||+||+++|++|+++++|
T Consensus 80 ~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~lL~~~~i~l~G 157 (297)
T PRK14167 80 TIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPAKDVDGFHPENVGRLVAG--DARFKPCTPHGIQKLLAAAGVDTEG 157 (297)
T ss_pred HHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999988 5789999999999999999999999
Q ss_pred cEEEEEcCCccchHHHHHHHhhC----CCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCC
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKA----DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAV 243 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~----gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~ 243 (299)
|+|+|||||++||||+++||+++ +||||+|||+|+++++++++|||||+|+|+|++|+++|||||++|||+|+|+.
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gaiVIDvGin~~ 237 (297)
T PRK14167 158 ADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRTDDLAAKTRRADIVVAAAGVPELIDGSMLSEGATVIDVGINRV 237 (297)
T ss_pred CEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEcccccc
Confidence 99999999999999999999998 89999999999999999999999999999999999999999999999999996
Q ss_pred CCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295 244 DDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298 (299)
Q Consensus 244 ~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~ 298 (299)
++. ..+|++++|||||+++.+++++||||||||||||++|||+|++++++++.+
T Consensus 238 ~~~-~~~g~kl~GDVd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~ 291 (297)
T PRK14167 238 DAD-TEKGYELVGDVEFESAKEKASAITPVPGGVGPMTRAMLLYNTVKAASLQEG 291 (297)
T ss_pred Ccc-cccCCceeecCcHHHHHhhceEecCCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 431 112347999999999999999999999999999999999999999987654
No 15
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.1e-94 Score=668.36 Aligned_cols=280 Identities=47% Similarity=0.784 Sum_probs=270.8
Q ss_pred eeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHH
Q 022295 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV 89 (299)
Q Consensus 10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i 89 (299)
++||||++|++|++++++++++|+++ |++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++.|
T Consensus 2 ~il~Gk~~a~~i~~~l~~~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I 80 (282)
T PRK14166 2 TLLDGKALSAKIKEELKEKNQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALI 80 (282)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 48999999999999999999999877 89999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcE
Q 022295 90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKR 169 (299)
Q Consensus 90 ~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~ 169 (299)
++||+|++|||||||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.|. .++|+||||+||+++|++|+++++||+
T Consensus 81 ~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g~-~~~~~PcTp~avi~lL~~y~i~l~Gk~ 159 (282)
T PRK14166 81 NTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNLGL-ESGFLPCTPLGVMKLLKAYEIDLEGKD 159 (282)
T ss_pred HHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhcCC-CCCCcCCCHHHHHHHHHHhCCCCCCCE
Confidence 9999999999999999999999999999999999999999999999999873 468999999999999999999999999
Q ss_pred EEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCccC
Q 022295 170 AVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK 249 (299)
Q Consensus 170 vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~~~ 249 (299)
|+|||||.+||+|+++||+++|||||+|||+|+|+++++++|||||+|+|+|+||+++|||||++|||+|+|+..++
T Consensus 160 vvVvGrS~iVGkPla~lL~~~~atVt~chs~T~nl~~~~~~ADIvIsAvGkp~~i~~~~vk~GavVIDvGin~~~~g--- 236 (282)
T PRK14166 160 AVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGINRLESG--- 236 (282)
T ss_pred EEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCCEEEEecccccCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996432
Q ss_pred CCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295 250 SGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI 297 (299)
Q Consensus 250 ~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~ 297 (299)
|++|||||+++.+++++||||||||||||++|||+|+++++++..
T Consensus 237 ---kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~v~a~~~~~ 281 (282)
T PRK14166 237 ---KIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKSAKNRL 281 (282)
T ss_pred ---CeeCCCCHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHhh
Confidence 799999999999999999999999999999999999999998654
No 16
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=5e-94 Score=666.95 Aligned_cols=281 Identities=50% Similarity=0.808 Sum_probs=273.4
Q ss_pred eeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHH
Q 022295 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV 89 (299)
Q Consensus 10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i 89 (299)
++||||++|++|+++++++++.|+++++++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++.|
T Consensus 2 ~ildGk~iA~~i~~~l~~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I 81 (286)
T PRK14184 2 LLLDGKATAATIREELKTEVAALTARHGRAPGLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLI 81 (286)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999999999887789999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcE
Q 022295 90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKR 169 (299)
Q Consensus 90 ~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~ 169 (299)
++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|+|+|+.| .++|+||||+||+++|++|+++++||+
T Consensus 82 ~~lN~d~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~av~~lL~~~~i~l~Gk~ 159 (286)
T PRK14184 82 AELNARPDIDGILLQLPLPKGLDSQRCLELIDPAKDVDGFHPENMGRLALG--LPGFRPCTPAGVMTLLERYGLSPAGKK 159 (286)
T ss_pred HHHhCCCcCceEEEecCCCCCCCHHHHHhccCcccCcccCCHhhHHHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCE
Confidence 999999999999999999999999999999999999999999999999987 578999999999999999999999999
Q ss_pred EEEEcCCccchHHHHHHHhh----CCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCC
Q 022295 170 AVVVGRSNIVGLPVSLLLLK----ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD 245 (299)
Q Consensus 170 vvViG~s~~vG~pla~lL~~----~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~ 245 (299)
|+|||||.+||+|+++||++ +|||||+||++|+++.+++++|||||+|+|+|++|+++|+|+|++|||+|+++.++
T Consensus 160 vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t~~l~~~~~~ADIVI~AvG~p~li~~~~vk~GavVIDVGi~~~~~ 239 (286)
T PRK14184 160 AVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRTPDLAEECREADFLFVAIGRPRFVTADMVKPGAVVVDVGINRTDD 239 (286)
T ss_pred EEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCchhHHHHHHhCCEEEEecCCCCcCCHHHcCCCCEEEEeeeeccCC
Confidence 99999999999999999999 89999999999999999999999999999999999999999999999999999743
Q ss_pred CccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhcC
Q 022295 246 STKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIEL 299 (299)
Q Consensus 246 ~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~~ 299 (299)
+++|||||+++.+++++||||||||||||++|||+|+++++++..||
T Consensus 240 -------~l~GDVdf~~v~~~a~~iTPVPGGVGp~Tva~Ll~N~~~a~~~~~~~ 286 (286)
T PRK14184 240 -------GLVGDCDFEGLSDVASAITPVPGGVGPMTIAQLLVNTVQSWKERVGL 286 (286)
T ss_pred -------CccCCccHHHHHhhceEecCCCCCChHHHHHHHHHHHHHHHHHhhCC
Confidence 59999999999999999999999999999999999999999988775
No 17
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=8.4e-94 Score=668.54 Aligned_cols=286 Identities=50% Similarity=0.763 Sum_probs=274.6
Q ss_pred cceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHH
Q 022295 8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS 87 (299)
Q Consensus 8 ~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 87 (299)
|+.+||||++|++|+++++++++.|+++.|++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+|+++
T Consensus 1 ~~~ildGk~iA~~i~~~lk~~v~~l~~~~g~~p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~ 80 (297)
T PRK14186 1 MALILDGKALAAEIEQRLQAQIESNLPKAGRPPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEA 80 (297)
T ss_pred CCEEeehHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 67899999999999999999999998877899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCC
Q 022295 88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKG 167 (299)
Q Consensus 88 ~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~g 167 (299)
.|++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|+|+|+.| ...|.||||+||+++|++|+++++|
T Consensus 81 ~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~aii~lL~~~~i~l~G 158 (297)
T PRK14186 81 LIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPDKDADGLHPLNLGRLVKG--EPGLRSCTPAGVMRLLRSQQIDIAG 158 (297)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999987 4679999999999999999999999
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCc
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDST 247 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~ 247 (299)
|+|+|||||++||+|+++||+++|||||+|||+|+++++++++|||||+|+|+|++++++|||+|++|||+|+|+.+++
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gavVIDvGin~~~~~- 237 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQDLASITREADILVAAAGRPNLIGAEMVKPGAVVVDVGIHRLPSS- 237 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecccccccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999996432
Q ss_pred cCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295 248 KKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI 297 (299)
Q Consensus 248 ~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~ 297 (299)
..+| |++|||||+++.+++++||||||||||||++|||+|++++++++.
T Consensus 238 ~~~g-kl~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~~a~~~~~ 286 (297)
T PRK14186 238 DGKT-RLCGDVDFEEVEPVAAAITPVPGGVGPMTVTMLLVNTVLSWQKRH 286 (297)
T ss_pred ccCC-ceeCCccHHHHHhhceEecCCCCCchHHHHHHHHHHHHHHHHHhh
Confidence 1124 899999999999999999999999999999999999999998754
No 18
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=7.9e-94 Score=664.51 Aligned_cols=278 Identities=46% Similarity=0.749 Sum_probs=270.5
Q ss_pred cceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHH
Q 022295 8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS 87 (299)
Q Consensus 8 ~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 87 (299)
-+.+||||++|++|++++++++++|+++.+.+|+||+|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++
T Consensus 2 ~~~ildGk~ia~~i~~~lk~~i~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~ 81 (284)
T PRK14177 2 SPILLDGKKLSEKIRNEIRETIEERKTKNKRIPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLG 81 (284)
T ss_pred CCeEeEhHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 37899999999999999999999998886788999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCC
Q 022295 88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKG 167 (299)
Q Consensus 88 ~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~g 167 (299)
.|++||+|++|||||||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.| .++|+||||+||+++|++|+++++|
T Consensus 82 ~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~ll~~y~i~l~G 159 (284)
T PRK14177 82 VIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALEKDVDGVTTLSFGKLSMG--VETYLPCTPYGMVLLLKEYGIDVTG 159 (284)
T ss_pred HHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccccccCChhhHHHHHcC--CCCCCCCCHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999988 5789999999999999999999999
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCc
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDST 247 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~ 247 (299)
|+|+|||||++||+|++++|+++|||||+|||+|+|+++++++|||||+|+|+|+|+++||||||++|||+|+|+
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~l~~~~~~ADIvIsAvGk~~~i~~~~ik~gavVIDvGin~----- 234 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLPSIVRQADIIVGAVGKPEFIKADWISEGAVLLDAGYNP----- 234 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEeCCCcCccCHHHcCCCCEEEEecCcc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295 248 KKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI 297 (299)
Q Consensus 248 ~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~ 297 (299)
+++|||||+++.+++++||||||||||||++|||+|+++++++.+
T Consensus 235 -----~~~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~ 279 (284)
T PRK14177 235 -----GNVGDIEISKAKDKSSFYTPVPGGVGPMTIAVLLLQTLYSFKEHF 279 (284)
T ss_pred -----cccCCcCHHHHhhhccEecCCCCCChHHHHHHHHHHHHHHHHhcc
Confidence 489999999999999999999999999999999999999997654
No 19
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.1e-93 Score=663.57 Aligned_cols=280 Identities=47% Similarity=0.754 Sum_probs=271.4
Q ss_pred eeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHH
Q 022295 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV 89 (299)
Q Consensus 10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i 89 (299)
.+||||++|++|++++++++++|+++.|++|+|++|++|+||+|..|+++|.|+|+++||+++.++||++++|+||++.|
T Consensus 2 ~ildGk~va~~i~~~lk~~v~~~~~~~g~~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I 81 (282)
T PRK14180 2 ILIDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELI 81 (282)
T ss_pred ceeeHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999999877689999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcE
Q 022295 90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKR 169 (299)
Q Consensus 90 ~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~ 169 (299)
++||+|++|||||||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.|+ ..+|+||||+||+++|++|+++++||+
T Consensus 82 ~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~-~~~~~PcTp~aii~lL~~y~i~l~Gk~ 160 (282)
T PRK14180 82 DQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRD-KKCLESCTPKGIMTMLREYGIKTEGAY 160 (282)
T ss_pred HHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCccccccccChhhHHHHhcCC-CCCcCCCCHHHHHHHHHHhCCCCCCCE
Confidence 9999999999999999999999999999999999999999999999999873 368999999999999999999999999
Q ss_pred EEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCccC
Q 022295 170 AVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK 249 (299)
Q Consensus 170 vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~~~ 249 (299)
|+|||||.+||+|+++||.++|||||+|||+|+|+.+++++|||||+|+|+|+|++++|||||++|||+|+|+.++
T Consensus 161 vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~dl~~~~k~ADIvIsAvGkp~~i~~~~vk~gavVIDvGin~~~g---- 236 (282)
T PRK14180 161 AVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVDG---- 236 (282)
T ss_pred EEEECCCCcchHHHHHHHHHCCCEEEEEcCCCCCHHHHhhhcCEEEEccCCcCcCCHHHcCCCcEEEEecccccCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998632
Q ss_pred CCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295 250 SGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI 297 (299)
Q Consensus 250 ~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~ 297 (299)
+++|||||+++.++++++|||||||||||++|||+|++++++++.
T Consensus 237 ---kl~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~~a~~~~~ 281 (282)
T PRK14180 237 ---KIVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQELN 281 (282)
T ss_pred ---ceeCCcCHHHHHhhccEeccCCCChhHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999999999999998765
No 20
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.6e-93 Score=663.29 Aligned_cols=282 Identities=44% Similarity=0.764 Sum_probs=268.7
Q ss_pred eeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHH
Q 022295 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV 89 (299)
Q Consensus 10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i 89 (299)
++||||++|++++++++++++.| +++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+|+++.|
T Consensus 1 ~ildGk~iA~~i~~~~k~~v~~l----~~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I 76 (287)
T PRK14181 1 MLLKGAPAAEHILATIKENISAS----STAPGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLI 76 (287)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHh----CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 37999999999999999999987 68999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcE
Q 022295 90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKR 169 (299)
Q Consensus 90 ~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~ 169 (299)
++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|+|+|+.|+ .++|+||||+||+++|++|+++++||+
T Consensus 77 ~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~KDVDGl~p~n~g~l~~g~-~~~~~PcTp~avi~lL~~~~i~l~Gk~ 155 (287)
T PRK14181 77 HRLNNDPNIHGILVQLPLPKHLDAQAILQAISPDKDVDGLHPVNMGKLLLGE-TDGFIPCTPAGIIELLKYYEIPLHGRH 155 (287)
T ss_pred HHHhCCCCCCeEEEcCCCCCCcCHHHHHhccCcccCcccCChhhHHHHhcCC-CCCCCCCCHHHHHHHHHHhCCCCCCCE
Confidence 9999999999999999999999999999999999999999999999999884 467999999999999999999999999
Q ss_pred EEEEcCCccchHHHHHHHhhC----CCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCC
Q 022295 170 AVVVGRSNIVGLPVSLLLLKA----DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD 245 (299)
Q Consensus 170 vvViG~s~~vG~pla~lL~~~----gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~ 245 (299)
|+|||||.+||||+++||+++ |||||+|||+|+++++++++|||||+|+|+|++|+++|||||++|||+|+|+..+
T Consensus 156 vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T~~l~~~~~~ADIvV~AvG~p~~i~~~~ik~GavVIDvGin~~~~ 235 (287)
T PRK14181 156 VAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQSENLTEILKTADIIIAAIGVPLFIKEEMIAEKAVIVDVGTSRVPA 235 (287)
T ss_pred EEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEeccccccc
Confidence 999999999999999999999 8999999999999999999999999999999999999999999999999999643
Q ss_pred CccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295 246 STKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI 297 (299)
Q Consensus 246 ~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~ 297 (299)
.+ .+|++++|||||+++.++++|+|||||||||||++|||+|++++++++.
T Consensus 236 ~~-~~g~kl~GDVd~e~~~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~ 286 (287)
T PRK14181 236 AN-PKGYILVGDVDFNNVVPKCRAITPVPGGVGPMTVAMLMRNTWESYLRHS 286 (287)
T ss_pred cc-CCCCeeEeccchHHHHhhcccccCCCCchHHHHHHHHHHHHHHHHHhhc
Confidence 11 1234799999999999999999999999999999999999999998753
No 21
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.4e-93 Score=661.85 Aligned_cols=281 Identities=48% Similarity=0.807 Sum_probs=271.2
Q ss_pred ccceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHH
Q 022295 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI 86 (299)
Q Consensus 7 ~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~ 86 (299)
||+.+|+||++|++++++++++++.|+++ |++|+||+|+||+||+|..|+++|.|+|+++||+++.++||++++|+||+
T Consensus 1 ~~~~il~Gk~va~~i~~~l~~~v~~l~~~-g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~ 79 (284)
T PRK14193 1 MTAIILDGKATADEIKADLAERVAALKEK-GITPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELN 79 (284)
T ss_pred CCCeEeeHHHHHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 45779999999999999999999999877 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcC
Q 022295 87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIK 166 (299)
Q Consensus 87 ~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~ 166 (299)
+.|++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|+|+|+.| ..+|+||||+||+++|++|+++++
T Consensus 80 ~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~ll~~~~i~l~ 157 (284)
T PRK14193 80 AVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPAKDADGLHPTNLGRLVLN--EPAPLPCTPRGIVHLLRRYDVELA 157 (284)
T ss_pred HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcccCccCCChhhhhHHhCC--CCCCCCCCHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999999999999999999987 567999999999999999999999
Q ss_pred CcEEEEEcCCccchHHHHHHHhh--CCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCC
Q 022295 167 GKRAVVVGRSNIVGLPVSLLLLK--ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVD 244 (299)
Q Consensus 167 gk~vvViG~s~~vG~pla~lL~~--~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~ 244 (299)
||+|+|||||++||+|+++||++ +|||||+|||+|+++.+++++|||||+|+|+|+|++++|+|||++|||+|+|+..
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T~~l~~~~k~ADIvV~AvGkp~~i~~~~ik~GavVIDvGin~~~ 237 (284)
T PRK14193 158 GAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGTRDLAAHTRRADIIVAAAGVAHLVTADMVKPGAAVLDVGVSRAG 237 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCCCCHHHHHHhCCEEEEecCCcCccCHHHcCCCCEEEEccccccC
Confidence 99999999999999999999998 7999999999999999999999999999999999999999999999999999954
Q ss_pred CCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295 245 DSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI 297 (299)
Q Consensus 245 ~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~ 297 (299)
++ +++|||| +++.+++++||||||||||||++|||+|+++++++..
T Consensus 238 ~g------kl~GDvd-~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~ 283 (284)
T PRK14193 238 DG------KLVGDVH-PDVWEVAGAVSPNPGGVGPMTRAFLLTNVVERAERRA 283 (284)
T ss_pred CC------cEEeecC-HhHHhhCCEEeCCCCChhHHHHHHHHHHHHHHHHHhh
Confidence 32 7999999 8999999999999999999999999999999998754
No 22
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.4e-93 Score=660.42 Aligned_cols=279 Identities=49% Similarity=0.807 Sum_probs=270.3
Q ss_pred eeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHH
Q 022295 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV 89 (299)
Q Consensus 10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i 89 (299)
++||||++|++|+++++++++.|+++.|++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+|+++.|
T Consensus 2 ~ildGk~iA~~i~~~l~~~v~~l~~~~g~~P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I 81 (281)
T PRK14183 2 QILDGKALSDKIKENVKKEVDELKLVKNIVPGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETI 81 (281)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999999999873489999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcE
Q 022295 90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKR 169 (299)
Q Consensus 90 ~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~ 169 (299)
++||+|++|||||||+|||+|+|+++++++|+|+|||||+|+.|+|+++.| .++|+||||+||+++|++|+++++||+
T Consensus 82 ~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~lL~~~~i~l~Gk~ 159 (281)
T PRK14183 82 AMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPKKDVDGFHPYNVGRLVTG--LDGFVPCTPLGVMELLEEYEIDVKGKD 159 (281)
T ss_pred HHHhCCCccCeEEEeCCCCCCCCHHHHHhccCchhcccccChhhhhHHhcC--CCCCCCCcHHHHHHHHHHcCCCCCCCE
Confidence 999999999999999999999999999999999999999999999999988 578999999999999999999999999
Q ss_pred EEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCccC
Q 022295 170 AVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK 249 (299)
Q Consensus 170 vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~~~ 249 (299)
|+|||||.+||+|+|++|+++|||||+|||+|+|+.+++++|||||+|+|+|++++++|||||++|||+|+|+..++
T Consensus 160 vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l~~~~~~ADIvV~AvGkp~~i~~~~vk~gavvIDvGin~~~~g--- 236 (281)
T PRK14183 160 VCVVGASNIVGKPMAALLLNANATVDICHIFTKDLKAHTKKADIVIVGVGKPNLITEDMVKEGAIVIDIGINRTEDG--- 236 (281)
T ss_pred EEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCcccccCHHHcCCCcEEEEeeccccCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996442
Q ss_pred CCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHH
Q 022295 250 SGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRV 296 (299)
Q Consensus 250 ~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~ 296 (299)
|+||||||+++.+++++||||||||||||++|||+|+++++++.
T Consensus 237 ---kl~GDVd~~~~~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~ 280 (281)
T PRK14183 237 ---RLVGDVDFENVAKKCSYITPVPGGVGPMTIAMLLSNTLKAAKNR 280 (281)
T ss_pred ---CeECCccHHHHHhhceEecCCCCCChHHHHHHHHHHHHHHHHhc
Confidence 79999999999999999999999999999999999999999753
No 23
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=4e-93 Score=661.12 Aligned_cols=283 Identities=51% Similarity=0.848 Sum_probs=273.9
Q ss_pred ccceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHH
Q 022295 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI 86 (299)
Q Consensus 7 ~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~ 86 (299)
||+++||||++|++|+++++++++.|+++ |++|+||+|++|+||+|..|+++|.|+|+++||+++.++||++++|+|++
T Consensus 1 M~~~ildGk~va~~i~~~lk~~i~~l~~~-g~~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~ 79 (285)
T PRK14189 1 MTAQLIDGNALSKQLRAEAAQRAAALTAR-GHQPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELL 79 (285)
T ss_pred CCCeEeeHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 45779999999999999999999999876 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcC
Q 022295 87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIK 166 (299)
Q Consensus 87 ~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~ 166 (299)
+.|++||+|++||||+||+|||+|+|+++++++|+|+|||||||+.|+|+++.| .++|+||||+||+++|++|+++++
T Consensus 80 ~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~aii~lL~~~~i~l~ 157 (285)
T PRK14189 80 ARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPEKDVDGFHVANAGALMTG--QPLFRPCTPYGVMKMLESIGIPLR 157 (285)
T ss_pred HHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhhhHhhCC--CCCCcCCCHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999999999999999999999999987 578999999999999999999999
Q ss_pred CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCC
Q 022295 167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDS 246 (299)
Q Consensus 167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~ 246 (299)
||+|+|||||++||+|++++|.++|||||+||++|+++.+++++|||||+|+|+|++++++|+|||++|||+|+|+..++
T Consensus 158 Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~~~~~~ADIVV~avG~~~~i~~~~ik~gavVIDVGin~~~~g 237 (285)
T PRK14189 158 GAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVAAVGKRNVLTADMVKPGATVIDVGMNRDDAG 237 (285)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCHHHHhhhCCEEEEcCCCcCccCHHHcCCCCEEEEccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986442
Q ss_pred ccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295 247 TKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298 (299)
Q Consensus 247 ~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~ 298 (299)
|++|||||+++.+++++||||||||||||++|||+|++++++++..
T Consensus 238 ------kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~Ll~N~~~a~~~~~~ 283 (285)
T PRK14189 238 ------KLCGDVDFAGVKEVAGYITPVPGGVGPMTITMLLVNTIEAAERAAA 283 (285)
T ss_pred ------CeeCCccHHHHHhhceEecCCCCCchHHHHHHHHHHHHHHHHHhhc
Confidence 7999999999999999999999999999999999999999998763
No 24
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=5.8e-93 Score=659.59 Aligned_cols=280 Identities=44% Similarity=0.769 Sum_probs=271.6
Q ss_pred cceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHH
Q 022295 8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS 87 (299)
Q Consensus 8 ~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 87 (299)
|+++||||++|++|+++++++++.|+++.|++|+||+|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++
T Consensus 7 ~~~ildGk~iA~~i~~~l~~~i~~l~~~~g~~P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 86 (287)
T PRK14176 7 ESRIIDGKALAKKIEAEVRSGVERLKSNRGITPGLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLE 86 (287)
T ss_pred ceEEEEhHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 48999999999999999999999998876899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCC
Q 022295 88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKG 167 (299)
Q Consensus 88 ~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~g 167 (299)
.|++||+|++||||+||+|||+|+|+++++++|+|+|||||||+.|+|+|+.| .++|+||||+||+++|++|+++++|
T Consensus 87 ~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g--~~~~~PcTp~av~~ll~~~~i~l~G 164 (287)
T PRK14176 87 LIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPAKDADGFHPYNMGKLMIG--DEGLVPCTPHGVIRALEEYGVDIEG 164 (287)
T ss_pred HHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCccccccccChhhhhhHhcC--CCCCCCCcHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999988 5689999999999999999999999
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCc
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDST 247 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~ 247 (299)
|+|+|||||++||+|++++|+++|||||+||++|+|+++++++|||||+|+|+|++|+++|+++|++|||+|+|+.+
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvv~AvG~p~~i~~~~vk~gavVIDvGin~~~--- 241 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLKKYTLDADILVVATGVKHLIKADMVKEGAVIFDVGITKEE--- 241 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHHHHHhhCCEEEEccCCccccCHHHcCCCcEEEEecccccC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999752
Q ss_pred cCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHH
Q 022295 248 KKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRV 296 (299)
Q Consensus 248 ~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~ 296 (299)
| |++|||||+.+.++++++|||||||||||++|||+|+++++++.
T Consensus 242 ---g-kl~GDvd~~~~~~~a~~iTPVPGGVGp~T~a~L~~n~~~a~~~~ 286 (287)
T PRK14176 242 ---D-KVYGDVDFENVIKKASLITPVPGGVGPLTIAMLMKHVLMCAEKS 286 (287)
T ss_pred ---C-CccCCcCHHHHHhhceEcCCCCCCChHHHHHHHHHHHHHHHHhc
Confidence 2 79999999999999999999999999999999999999998753
No 25
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=8e-93 Score=658.61 Aligned_cols=284 Identities=54% Similarity=0.852 Sum_probs=274.8
Q ss_pred ccceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHH
Q 022295 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI 86 (299)
Q Consensus 7 ~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~ 86 (299)
||+++||||++|+++++++++++++|+++.+++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||+
T Consensus 1 M~~~ildGk~va~~i~~~lk~~v~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~ 80 (285)
T PRK10792 1 MTAKIIDGKTIAQQVRSEVAQKVQARVAAGLRAPGLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELL 80 (285)
T ss_pred CCCeEeeHHHHHHHHHHHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 45789999999999999999999999887678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcC
Q 022295 87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIK 166 (299)
Q Consensus 87 ~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~ 166 (299)
+.|++||+|++|||||||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.| .++|+||||+||+++|++|+++++
T Consensus 81 ~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~ll~~~~i~l~ 158 (285)
T PRK10792 81 ALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHPDKDVDGFHPYNVGRLAQR--IPLLRPCTPRGIMTLLERYGIDTY 158 (285)
T ss_pred HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccCccChhhHhHHhCC--CCCCCCCCHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999999999999999999999999987 578999999999999999999999
Q ss_pred CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCC
Q 022295 167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDS 246 (299)
Q Consensus 167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~ 246 (299)
||+|+|||||.+||+|++++|+++|||||+|||+|+++++++++|||||+|+|+|++|+++|+++|++|||+|+|+.+++
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvi~avG~p~~v~~~~vk~gavVIDvGin~~~~g 238 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLRHHVRNADLLVVAVGKPGFIPGEWIKPGAIVIDVGINRLEDG 238 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHHHHHhhCCEEEEcCCCcccccHHHcCCCcEEEEcccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997542
Q ss_pred ccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295 247 TKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298 (299)
Q Consensus 247 ~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~ 298 (299)
+++|||||+.+.++++++|||||||||||++|||+|+++++++|..
T Consensus 239 ------k~~GDvd~~~~~~~a~~itPvPGGVGp~T~a~L~~N~~~a~~~~~~ 284 (285)
T PRK10792 239 ------KLVGDVEFETAAERASWITPVPGGVGPMTVATLLENTLQACEEYHD 284 (285)
T ss_pred ------CcCCCcCHHHHHhhccCcCCCCCCChHHHHHHHHHHHHHHHHHhhc
Confidence 7999999999999999999999999999999999999999998863
No 26
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.6e-92 Score=655.17 Aligned_cols=280 Identities=48% Similarity=0.768 Sum_probs=272.0
Q ss_pred eeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHH
Q 022295 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV 89 (299)
Q Consensus 10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i 89 (299)
++||||++|++|+++++++++.|+++.|++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++.|
T Consensus 2 ~il~Gk~~A~~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I 81 (285)
T PRK14191 2 VLLDGKALSYKIEKDLKNKIQILTAQTGKRPKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLI 81 (285)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999999999877789999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcE
Q 022295 90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKR 169 (299)
Q Consensus 90 ~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~ 169 (299)
++||+|++|||||||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.| .++|+||||+||+++|++|+++++||+
T Consensus 82 ~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~lL~~~~i~l~Gk~ 159 (285)
T PRK14191 82 KDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGFHPLNIGKLCSQ--LDGFVPATPMGVMRLLKHYHIEIKGKD 159 (285)
T ss_pred HHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHHhcC--CCCCCCCcHHHHHHHHHHhCCCCCCCE
Confidence 999999999999999999999999999999999999999999999999988 578999999999999999999999999
Q ss_pred EEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCccC
Q 022295 170 AVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK 249 (299)
Q Consensus 170 vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~~~ 249 (299)
|+|||||++||+|+|++|+++|||||+||++|+++.+++++|||||+|+|+|++++++|+|||++|||+|+|+.+++
T Consensus 160 vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~~~~~ADIvV~AvG~p~~i~~~~vk~GavVIDvGi~~~~~g--- 236 (285)
T PRK14191 160 VVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQNADIVCVGVGKPDLIKASMVKKGAVVVDIGINRLNDG--- 236 (285)
T ss_pred EEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCEEEEecCCCCcCCHHHcCCCcEEEEeecccccCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996442
Q ss_pred CCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295 250 SGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI 297 (299)
Q Consensus 250 ~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~ 297 (299)
|+||||||+++.+++++||||||||||||++|||+|++++++++.
T Consensus 237 ---klvGDvd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~ 281 (285)
T PRK14191 237 ---RLVGDVDFENVAPKASFITPVPGGVGPMTIVSLLENTLIAAEKRQ 281 (285)
T ss_pred ---ceeccccHHHHhhhccEEecCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999998754
No 27
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=3.5e-92 Score=654.51 Aligned_cols=282 Identities=49% Similarity=0.821 Sum_probs=274.5
Q ss_pred cceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHH
Q 022295 8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS 87 (299)
Q Consensus 8 ~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 87 (299)
|+++||||++|++++++++++++.|++++|++|+|++|++|+||+|..|+++|.|+|+++||+++.++||++++|+||++
T Consensus 1 ~~~ildGk~ia~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~ 80 (284)
T PRK14179 1 MTEIIDGKALAQKMQAELAEKVAKLKEEKGIVPGLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLD 80 (284)
T ss_pred CCeEEEhHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 57899999999999999999999998877899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCC
Q 022295 88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKG 167 (299)
Q Consensus 88 ~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~g 167 (299)
.|++||+|++|||||||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.| .++|+||||+||+++|++|+++++|
T Consensus 81 ~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i~l~G 158 (284)
T PRK14179 81 LIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPKKDVDGFHPMNTGHLWSG--RPVMIPCTPAGIMEMFREYNVELEG 158 (284)
T ss_pred HHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCccccccccCHhhHHHHhCC--CCCCcCCCHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999987 5789999999999999999999999
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCc
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDST 247 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~ 247 (299)
|+|+|||+|++||+|+|++|+++|||||+||++|+++++++++|||||+|+|+|++++++|++||++|||+|+|+..++
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVI~avg~~~~v~~~~ik~GavVIDvgin~~~~g- 237 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLAEVARKADILVVAIGRGHFVTKEFVKEGAVVIDVGMNRDENG- 237 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEecCccccCCHHHccCCcEEEEecceecCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999996442
Q ss_pred cCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295 248 KKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI 297 (299)
Q Consensus 248 ~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~ 297 (299)
|+||||||+++.+++++||||||||||||++|||+|+++++++|.
T Consensus 238 -----kl~GDVdf~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~ 282 (284)
T PRK14179 238 -----KLIGDVDFDEVAEVASYITPVPGGVGPMTITMLMEQTYQAALRSL 282 (284)
T ss_pred -----CeecCccHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 799999999999999999999999999999999999999999986
No 28
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=5.3e-92 Score=653.68 Aligned_cols=280 Identities=48% Similarity=0.751 Sum_probs=267.7
Q ss_pred ccceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHH
Q 022295 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI 86 (299)
Q Consensus 7 ~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~ 86 (299)
|++.+|+||++|++|+++++++++.| +++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||+
T Consensus 1 m~~~il~Gk~vA~~i~~~l~~~v~~l----~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~ 76 (287)
T PRK14173 1 MAARELSGPPAAEAVYAELRARLAKL----PFVPHLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELL 76 (287)
T ss_pred CCCeEeeHHHHHHHHHHHHHHHHHHh----CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 45679999999999999999999987 47899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcC
Q 022295 87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIK 166 (299)
Q Consensus 87 ~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~ 166 (299)
+.|++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|+|+|+.| .+.|+||||+||+++|++|+++++
T Consensus 77 ~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i~l~ 154 (287)
T PRK14173 77 ELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPLKDVDGFHPLNVGRLWMG--GEALEPCTPAGVVRLLKHYGIPLA 154 (287)
T ss_pred HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhhHHHhcC--CCCCCCCCHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999999999999999999999999988 467999999999999999999999
Q ss_pred CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCC
Q 022295 167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDS 246 (299)
Q Consensus 167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~ 246 (299)
||+|+|||||++||+|+++||+++|||||+|||+|+|+++++++|||||+|+|+|+|++++|||+|++|||+|+|+..++
T Consensus 155 Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~vk~GavVIDVGin~~~~~ 234 (287)
T PRK14173 155 GKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQDLPAVTRRADVLVVAVGRPHLITPEMVRPGAVVVDVGINRVGGN 234 (287)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEEccCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996321
Q ss_pred ccCCCce--eeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295 247 TKKSGYR--LVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI 297 (299)
Q Consensus 247 ~~~~g~k--l~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~ 297 (299)
+| + ++|||| +++.+++++||||||||||||++|||+|++++++++.
T Consensus 235 ---~g-k~~l~GDVd-~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~ 282 (287)
T PRK14173 235 ---GG-RDILTGDVH-PEVAEVAGALTPVPGGVGPMTVAMLMANTVIAALRRR 282 (287)
T ss_pred ---CC-ceeeecccc-HhHHhhCcEEecCCCChhHHHHHHHHHHHHHHHHHHc
Confidence 12 5 999999 6899999999999999999999999999999998754
No 29
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.5e-91 Score=653.81 Aligned_cols=290 Identities=54% Similarity=0.839 Sum_probs=275.3
Q ss_pred eeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHH
Q 022295 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV 89 (299)
Q Consensus 10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i 89 (299)
.+||||++|++++++++++++.|+++.|++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++.|
T Consensus 2 ~il~Gk~iA~~i~~~i~~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I 81 (295)
T PRK14174 2 LIIDGKKVSLDLKNELKTRVEAYRAKTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKI 81 (295)
T ss_pred EEEeHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999999887789999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcE
Q 022295 90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKR 169 (299)
Q Consensus 90 ~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~ 169 (299)
++||+|++||||+||+|||+|+|+.+++++|+|+|||||+|+.|+|+|+.|+..++|+||||+||+++|++|+++++||+
T Consensus 82 ~~lN~D~~V~GIlvq~Plp~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~ail~ll~~y~i~l~Gk~ 161 (295)
T PRK14174 82 EDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPAKDVDGFHPENLGRLVMGHLDKCFVSCTPYGILELLGRYNIETKGKH 161 (295)
T ss_pred HHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHHhcCCCCCCcCCCCHHHHHHHHHHhCCCCCCCE
Confidence 99999999999999999999999999999999999999999999999998853478999999999999999999999999
Q ss_pred EEEEcCCccchHHHHHHHhh----CCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCC
Q 022295 170 AVVVGRSNIVGLPVSLLLLK----ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD 245 (299)
Q Consensus 170 vvViG~s~~vG~pla~lL~~----~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~ 245 (299)
|+|||||++||+|+++||++ +|+|||+||++|.++.+++++|||||+|+|+|++|+++|+|+|++|||+|+++.++
T Consensus 162 vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t~~l~~~~~~ADIvI~Avg~~~li~~~~vk~GavVIDVgi~~~~~ 241 (295)
T PRK14174 162 CVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSATKDIPSYTRQADILIAAIGKARFITADMVKPGAVVIDVGINRIED 241 (295)
T ss_pred EEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCchhHHHHHHhCCEEEEecCccCccCHHHcCCCCEEEEeecccccc
Confidence 99999999999999999998 78999999999999999999999999999999999999999999999999999644
Q ss_pred CccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhcC
Q 022295 246 STKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIEL 299 (299)
Q Consensus 246 ~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~~ 299 (299)
+..++|+|++|||||+++.+++++||||||||||||++|||+|+++++++...|
T Consensus 242 ~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~~a~~~~~~~ 295 (295)
T PRK14174 242 PSTKSGYRLVGDVDYEGVSAKASAITPVPGGVGPMTIAMLLKNTLQSFERVNNL 295 (295)
T ss_pred ccccCCCceECCcCHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHHhcC
Confidence 222334489999999999999999999999999999999999999999876543
No 30
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.5e-91 Score=651.23 Aligned_cols=283 Identities=46% Similarity=0.786 Sum_probs=273.5
Q ss_pred ccceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHH
Q 022295 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI 86 (299)
Q Consensus 7 ~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~ 86 (299)
||+++||||++|++++++++++++.|+++ |++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||+
T Consensus 1 m~~~il~Gk~ia~~i~~~~~~~v~~l~~~-g~~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~ 79 (286)
T PRK14175 1 MVAKILDGKQIAKDYRQGLQDQVEALKEK-GFTPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVL 79 (286)
T ss_pred CCCeEeeHHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 56789999999999999999999999876 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcC
Q 022295 87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIK 166 (299)
Q Consensus 87 ~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~ 166 (299)
+.|++||+|++||||+||+|||+|+|+++++++|+|+|||||+|+.|+|+|+.| .++|+||||+||+++|++|+++++
T Consensus 80 ~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~ai~~ll~~~~i~l~ 157 (286)
T PRK14175 80 NELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKLYID--EQTFVPCTPLGIMEILKHADIDLE 157 (286)
T ss_pred HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCCccchHhHhcC--CCCCCCCcHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999999999999999999999999987 578999999999999999999999
Q ss_pred CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCC
Q 022295 167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDS 246 (299)
Q Consensus 167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~ 246 (299)
||+|+|||||++||+|+|++|.++|||||+|||+|.++.+++++|||||+|+|+|++|+++|+++|++|||+|+++..+
T Consensus 158 Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVIsAvg~p~~i~~~~vk~gavVIDvGi~~~~~- 236 (286)
T PRK14175 158 GKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDADVIVSAVGKPGLVTKDVVKEGAVIIDVGNTPDEN- 236 (286)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHHHhhCCEEEECCCCCcccCHHHcCCCcEEEEcCCCcCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998533
Q ss_pred ccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295 247 TKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298 (299)
Q Consensus 247 ~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~ 298 (299)
| |++|||||+++.++++++|||||||||||++|||+|++++++++.+
T Consensus 237 ----g-kl~GDvd~~~~~~~a~~iTPVPGGVGp~T~a~L~~n~~~a~~~~~~ 283 (286)
T PRK14175 237 ----G-KLKGDVDYDAVKEIAGAITPVPGGVGPLTITMVLNNTLLAEKMRRG 283 (286)
T ss_pred ----C-CeecCccHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 2 7999999999999999999999999999999999999999987654
No 31
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=3.3e-90 Score=645.38 Aligned_cols=285 Identities=50% Similarity=0.823 Sum_probs=274.1
Q ss_pred ccceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHH
Q 022295 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI 86 (299)
Q Consensus 7 ~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~ 86 (299)
||+++||||++|++|+++++++++.|+++ |++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||+
T Consensus 2 m~~~il~Gk~iA~~i~~~lk~~i~~l~~~-g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~ 80 (301)
T PRK14194 2 MSAKLIDGKAAAARVLAQVREDVRTLKAA-GIEPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLL 80 (301)
T ss_pred CCCeEeeHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 56789999999999999999999999877 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcC
Q 022295 87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIK 166 (299)
Q Consensus 87 ~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~ 166 (299)
+.|++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|+|+|+.| .++|+||||+||+++|++|+++++
T Consensus 81 ~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~aii~lL~~~~i~l~ 158 (301)
T PRK14194 81 ALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPLKDVDGFHSENVGGLSQG--RDVLTPCTPSGCLRLLEDTCGDLT 158 (301)
T ss_pred HHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCchhccCccChhhhhHHhcC--CCCCCCCcHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999999999999999999988 578999999999999999999999
Q ss_pred CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCC
Q 022295 167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDS 246 (299)
Q Consensus 167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~ 246 (299)
||+|+|||+|++||+|+|++|+++|++||+|||+|+++++++++|||||+++|.|++++++|++||++|||+|+|+.++.
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~~~~ADIVIsavg~~~~v~~~~ik~GaiVIDvgin~~~~~ 238 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCRQADIVVAAVGRPRLIDADWLKPGAVVIDVGINRIDDD 238 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHHHHhcCCEEEEecCChhcccHhhccCCcEEEEecccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996431
Q ss_pred ccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295 247 TKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI 297 (299)
Q Consensus 247 ~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~ 297 (299)
. .+|++|||||+++.+++++||||||||||||++|||+|+++++++|.
T Consensus 239 g---~~kl~GDvdf~~~~~~a~~iTPVPGGVGp~Tva~L~~N~~~a~~~~~ 286 (301)
T PRK14194 239 G---RSRLVGDVDFDSALPVVSAITPVPGGVGPMTIAFLMKNTVTAARLQA 286 (301)
T ss_pred C---CcceecccchHHHHhhcceecCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 0 12799999999999999999999999999999999999999999886
No 32
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=7.2e-90 Score=637.16 Aligned_cols=274 Identities=52% Similarity=0.827 Sum_probs=266.1
Q ss_pred eeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHH
Q 022295 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV 89 (299)
Q Consensus 10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i 89 (299)
++||||++|++|++++++++++| +++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++.|
T Consensus 1 ~il~Gk~~a~~i~~~~~~~v~~l----g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I 76 (279)
T PRK14178 1 MILDGKAVSEKRLELLKEEIIES----GLYPRLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERI 76 (279)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHh----CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 38999999999999999999887 78999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcE
Q 022295 90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKR 169 (299)
Q Consensus 90 ~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~ 169 (299)
++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|+|+|+.| .++|+||||+|++++|++|+++++||+
T Consensus 77 ~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~ll~~~~i~l~Gk~ 154 (279)
T PRK14178 77 RRLNEDPDINGILVQLPLPKGVDTERVIAAILPEKDVDGFHPLNLGRLVSG--LPGFAPCTPNGIMTLLHEYKISIAGKR 154 (279)
T ss_pred HHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhCC--CCCCCCCCHHHHHHHHHHcCCCCCCCE
Confidence 999999999999999999999999999999999999999999999999987 578999999999999999999999999
Q ss_pred EEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCccC
Q 022295 170 AVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK 249 (299)
Q Consensus 170 vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~~~ 249 (299)
|+|+|||..||+|+|++|.++|||||+|||+|+++.+++++|||||+|+|+|++++++|+|||++|||+|+++.++
T Consensus 155 V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~~~~ADIvI~Avgk~~lv~~~~vk~GavVIDVgi~~~~g---- 230 (279)
T PRK14178 155 AVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAELRQADILVSAAGKAGFITPDMVKPGATVIDVGINQVNG---- 230 (279)
T ss_pred EEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHHHHhhCCEEEECCCcccccCHHHcCCCcEEEEeeccccCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998632
Q ss_pred CCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHH
Q 022295 250 SGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRV 296 (299)
Q Consensus 250 ~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~ 296 (299)
|++|||||+++.++++++|||||||||||++|||+|++++++++
T Consensus 231 ---kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~ 274 (279)
T PRK14178 231 ---KLCGDVDFDAVKEIAGAITPVPGGVGPMTIATLMENTFDAAKMR 274 (279)
T ss_pred ---CCcCCccHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999998753
No 33
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.7e-88 Score=634.31 Aligned_cols=288 Identities=54% Similarity=0.852 Sum_probs=273.9
Q ss_pred cceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHH
Q 022295 8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS 87 (299)
Q Consensus 8 ~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 87 (299)
|+++||||++|++|+++++++++.|+++.|++|+|++|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++
T Consensus 1 ~~~il~Gk~~a~~i~~~i~~~v~~l~~~~g~~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~ 80 (296)
T PRK14188 1 MATIIDGKAFAADVRATVAAEVARLKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLA 80 (296)
T ss_pred CCEEEEHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 57899999999999999999999998776899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCC
Q 022295 88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKG 167 (299)
Q Consensus 88 ~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~g 167 (299)
.|++||+|++|||||||+|||+|+|+++++++|+|+|||||||+.|+|+|+.| .++|+||||+||+++|++|+++++|
T Consensus 81 ~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~ai~~ll~~~~i~~~G 158 (296)
T PRK14188 81 LIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPEKDVDGLHVVNAGRLATG--ETALVPCTPLGCMMLLRRVHGDLSG 158 (296)
T ss_pred HHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcccccccCChhhHHHHhCC--CCCCcCCCHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999988 5789999999999999999999999
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCc
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDST 247 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~ 247 (299)
|+|+|||||+.+|+|+|++|+++|++|++||++|+++++++++|||||+++|.|++++++|++||++|||+|+|+.++.+
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l~e~~~~ADIVIsavg~~~~v~~~~lk~GavVIDvGin~~~~~~ 238 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDLPAVCRRADILVAAVGRPEMVKGDWIKPGATVIDVGINRIPAPE 238 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCHHHHHhcCCEEEEecCChhhcchheecCCCEEEEcCCcccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999864211
Q ss_pred cCCCc-eeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295 248 KKSGY-RLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI 297 (299)
Q Consensus 248 ~~~g~-kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~ 297 (299)
.++|+ +++|||||+++.+++++||||||||||||++|||+|+++++++..
T Consensus 239 ~~~g~~~l~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~ 289 (296)
T PRK14188 239 KGEGKTRLVGDVAFAEAAEVAGAITPVPGGVGPMTIACLLANTLTAACRAA 289 (296)
T ss_pred ccCCCceeeCCCCHHHHHhhccEecCCCCChhHHHHHHHHHHHHHHHHHhc
Confidence 11232 699999999999999999999999999999999999999998753
No 34
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1e-88 Score=662.75 Aligned_cols=291 Identities=55% Similarity=0.884 Sum_probs=285.8
Q ss_pred ccceeeccHHHHHHHHHHHHHHHHHHHhcC-CCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHH
Q 022295 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAEL 85 (299)
Q Consensus 7 ~~~~il~gk~~a~~i~~~~~~~v~~l~~~~-~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el 85 (299)
|++.||+|+.+|+++|++++++++.+++++ +++|.|+|||||++++|+.|+|||.|+++++||++.++.||++++|-||
T Consensus 1 ~~a~IL~Gk~la~kvr~~v~~eI~~ik~~~PnF~p~LaIiQVGnR~DSnvYVrmKlKAA~e~Gid~~~iklPetiTe~el 80 (935)
T KOG4230|consen 1 MVAEILSGKELARKVREDVAEEIQSIKEHHPNFKPVLAIIQVGNREDSNVYVRMKLKAAKEIGIDAKHIKLPETITEGEL 80 (935)
T ss_pred CcchhhccHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCcCCcceeehhhhhHHHhcCCceEEecCcccccHHHH
Confidence 568999999999999999999999999988 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCc
Q 022295 86 ISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTI 165 (299)
Q Consensus 86 ~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l 165 (299)
+..|.+||+|+.||||+||+|||.|+|++.+.++|+|+||||||+.+|.|+|..++.++.|+||||.|||++|+++++.+
T Consensus 81 l~~I~~lNeD~tvHGiiVQLPLp~hide~~Vt~aI~peKDVDGf~~~NaG~Lak~~g~p~f~PCTPkGcmeLlk~a~v~v 160 (935)
T KOG4230|consen 81 LREIKALNEDPTVHGIIVQLPLPAHIDEDTVTEAIDPEKDVDGFTRINAGRLAKGEGQPTFIPCTPKGCMELLKEAGVFV 160 (935)
T ss_pred HHHHHhccCCCccceEEEeccCccccchhhHhhccCcccccccccccchhhhhccCCCceeeccChHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999887789999999999999999999999
Q ss_pred CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCC
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD 245 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~ 245 (299)
.||++||+|||.+||.|++.+|.+.++|||+|||+|+++.+++.+|||||.|+|.|+|++.||+|||++|||+|+|++.|
T Consensus 161 ~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSKT~~lae~v~~ADIvIvAiG~PefVKgdWiKpGavVIDvGINyvpD 240 (935)
T KOG4230|consen 161 AGKNAVVLGRSKIVGSPIAALLLWANATVTICHSKTRNLAEKVSRADIVIVAIGQPEFVKGDWIKPGAVVIDVGINYVPD 240 (935)
T ss_pred ccceeEEEecccccCChHHHHHHhcCceEEEecCCCccHHHHhccCCEEEEEcCCcceeecccccCCcEEEEccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295 246 STKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI 297 (299)
Q Consensus 246 ~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~ 297 (299)
+++++|+|++|||||+++.+++++||||||||||||+||||+|++++++|+.
T Consensus 241 ~~Kksg~klvGDVdfe~Akevas~ITPVPGGVGPMTVAMLmqNtveaAKR~r 292 (935)
T KOG4230|consen 241 PSKKSGFKLVGDVDFESAKEVASFITPVPGGVGPMTVAMLMQNTVEAAKRQR 292 (935)
T ss_pred CCCcccceEeeecchHhhhhhhhccccCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 9888999999999999999999999999999999999999999999999875
No 35
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=6.9e-84 Score=601.55 Aligned_cols=283 Identities=43% Similarity=0.760 Sum_probs=272.9
Q ss_pred ccceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHH
Q 022295 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELI 86 (299)
Q Consensus 7 ~~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~ 86 (299)
||+++||||++|++++++++++++.|+++.|++|+|++|+||+||+|..|+++|+++|+++||+++++.||+++++++|.
T Consensus 1 ~~~~~l~gk~~a~~i~~~~~~~i~~~~~~~~~~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~ 80 (283)
T PRK14192 1 MMALVLDGKALAKQIEEELSVRVEALKAKTGRTPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLL 80 (283)
T ss_pred CCCeEeeHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 45679999999999999999999999887789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcC
Q 022295 87 SKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIK 166 (299)
Q Consensus 87 ~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~ 166 (299)
+.|++||+|+++|||+||+|||+|+++++++++|+|+|||||+|+.|.|+++.| .+.|.||||.|++++|++|+++++
T Consensus 81 ~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I~~aKDVdg~n~~n~G~l~~~--~~~~~p~T~~gii~~L~~~~i~l~ 158 (283)
T PRK14192 81 AKIEELNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCLGFGRMAMG--EAAYGSATPAGIMRLLKAYNIELA 158 (283)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccccCHHHHHhccCHHHhcCCCCccccCccccC--CCcccCCcHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999999999999999999999999987 578999999999999999999999
Q ss_pred CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCC
Q 022295 167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDS 246 (299)
Q Consensus 167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~ 246 (299)
||+|+|+|||++||+|++++|+++||+||+|||+++++.+.+++|||||+|||+|++++.+|+++|++|||+|+++.++
T Consensus 159 Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~~~~~~aDIvI~AtG~~~~v~~~~lk~gavViDvg~n~~~~- 237 (283)
T PRK14192 159 GKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLPELVKQADIIVGAVGKPELIKKDWIKQGAVVVDAGFHPRDG- 237 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHHHHhccCCEEEEccCCCCcCCHHHcCCCCEEEEEEEeecCC-
Confidence 9999999999988999999999999999999999999999999999999999999999999999999999999998643
Q ss_pred ccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295 247 TKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298 (299)
Q Consensus 247 ~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~ 298 (299)
++||||||+++.++++++|||||||||||++|||+|++++++++++
T Consensus 238 ------~~~GDvd~~~~~~~a~~itPvPGGVGp~T~a~L~~n~~~~~~~~~~ 283 (283)
T PRK14192 238 ------GGVGDIELQGIEEIASAYTPVPGGVGPMTINTLIRQTVEAAEKALG 283 (283)
T ss_pred ------CCcccccHHHhhccceEeCCCCCcChHHHHHHHHHHHHHHHHHhcC
Confidence 5899999999999999999999999999999999999999987653
No 36
>KOG0089 consensus Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.2e-81 Score=569.35 Aligned_cols=290 Identities=60% Similarity=0.926 Sum_probs=279.3
Q ss_pred cceeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHH
Q 022295 8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELIS 87 (299)
Q Consensus 8 ~~~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~ 87 (299)
++.+++||.+|+.+++++..+++.+++.+|..|+|+.++||+||+|..|+.+|+|+|+++||.+..+.||++.+++++++
T Consensus 7 ~~~viagk~~a~~i~~~i~~e~~~~~~~~g~~P~L~~~lvg~~pas~~Ya~~k~kac~~vGi~s~~~~l~~~~~~~~l~~ 86 (309)
T KOG0089|consen 7 TAVVIAGKVAATFIRQEIANEVEGMKESNGKVPGLVGFLVGEDPASQMYATNKTKACEEVGIKSFQYELPESESEDELES 86 (309)
T ss_pred ceEEEehhHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEeCCCcchHHHHHHHHHHHHHhhhcccccccccccCHHHHHH
Confidence 57899999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCC
Q 022295 88 KVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKG 167 (299)
Q Consensus 88 ~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~g 167 (299)
.|.++|+||+||||+||+|+|.|++++.|++.++|+|||||||+.|.|+|...+..+.|+||||.||+++|+++++.+.|
T Consensus 87 ~i~~~N~d~sV~GilV~~pv~~h~~eq~i~n~Vs~eKDVDgfh~~Nigrl~ld~~~~~~lPcTP~gv~eiL~r~gI~~~G 166 (309)
T KOG0089|consen 87 AIAEANNDPSVHGILVQLPVPQHIQEQYILNAVSPEKDVDGFHPLNIGRLALDGREPLFLPCTPLGVVEILERTGIETYG 166 (309)
T ss_pred HHHHhcCCCceeeEEEEeeccccccHHHHHhhcCcccccccccccchhhhccccccccccCCchHHHHHHHHHhCCeecC
Confidence 99999999999999999999999999999999999999999999999999987667789999999999999999999999
Q ss_pred cEEEEEcCCccchHHHHHHHhhC--------CCeEEEEcCCCCC--hhhhccCCcEEEEecCCCCcCCCCccCCCeEEEE
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKA--------DATVTIVHSHTTD--PESIVREADIVIAAAGQAMMIKGSWIKPGAAVID 237 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~--------gatVtv~~~~t~~--l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVID 237 (299)
|+++|+|||++||+|+|++|++. .||||++||.|++ ++.++++|||+|+|+|.|++|+.||+|||+.|+|
T Consensus 167 Kn~VVigRS~iVg~P~A~LL~~dG~~~~~~~datVti~hr~t~~~~lk~ht~~adivi~a~g~p~li~~d~Ik~Ga~vid 246 (309)
T KOG0089|consen 167 KNAVVIGRSKIVGMPLALLLHNDGAHVYSVDDATVTIFHRYTSKPQLKHHTRDADIVISAVGIPNLITSDMIKPGAAVID 246 (309)
T ss_pred ceEEEEcccccccchHHHHHhhcCCcccccCcceEEEEEcCCCchhHHHHHHhcceeehhcCCCcccccceeecCceeEe
Confidence 99999999999999999999998 6899999999976 4889999999999999999999999999999999
Q ss_pred eeccCCCCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHh
Q 022295 238 VGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI 297 (299)
Q Consensus 238 vg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~ 297 (299)
+|+|+..++....+.+|+|||||+++..++++||||||||||||+||||+|+++++++.+
T Consensus 247 vgin~v~dp~~a~~~klvgdvdFe~~~~kag~itpVPggvGpmTiAMLl~Ntl~~ak~v~ 306 (309)
T KOG0089|consen 247 VGINRVHDPSTAVGIKLVGDVDFEEASKKAGAITPVPGGVGPMTIAMLLRNTLRAAKRVF 306 (309)
T ss_pred cCCCcccccccceeeEEeeeccHHHhhhhcCccccCCCCCCchhHHHHHHHHHHHHHHHh
Confidence 999999998766577999999999999999999999999999999999999999999765
No 37
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=100.00 E-value=2.1e-55 Score=378.39 Aligned_cols=160 Identities=56% Similarity=0.926 Sum_probs=138.8
Q ss_pred CcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhcc
Q 022295 130 HPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVR 209 (299)
Q Consensus 130 ~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~ 209 (299)
||+|+|+|+.| +++|+||||+|++++|++|+++++||+|+|||||++||+|++++|.++|||||+||++|++++++++
T Consensus 1 hp~N~g~l~~~--~~~~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~ 78 (160)
T PF02882_consen 1 HPLNLGRLVSG--QPGFVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITR 78 (160)
T ss_dssp SHHHHHHHHTT--TTSS--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHT
T ss_pred CcHhHHHHhCC--CCCCcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceee
Confidence 79999999988 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHH
Q 022295 210 EADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNT 289 (299)
Q Consensus 210 ~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~ 289 (299)
+|||||+|+|+|++|+++|+|||++|||+|+++... +++++|||||++++++++++|||||||||+|++|||+|+
T Consensus 79 ~ADIVVsa~G~~~~i~~~~ik~gavVIDvG~~~~~~-----~~~~~GDv~~~~~~~~a~~itPvPgGVGplT~a~L~~N~ 153 (160)
T PF02882_consen 79 RADIVVSAVGKPNLIKADWIKPGAVVIDVGINYVPG-----DGKLVGDVDFESVKEKASAITPVPGGVGPLTVAMLMKNL 153 (160)
T ss_dssp TSSEEEE-SSSTT-B-GGGS-TTEEEEE--CEEETT-----TTEEEESB-HHHHHTTCSEEE-SSSSCHHHHHHHHHHHH
T ss_pred eccEEeeeeccccccccccccCCcEEEecCCccccc-----cceeeecccHHHhhccceEEeeCCCCccHHHHHHHHHHH
Confidence 999999999999999999999999999999999722 138999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 022295 290 LDGAKRV 296 (299)
Q Consensus 290 v~a~~~~ 296 (299)
+++++++
T Consensus 154 v~a~~~~ 160 (160)
T PF02882_consen 154 VKAAKRQ 160 (160)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9999874
No 38
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=100.00 E-value=1.3e-49 Score=350.14 Aligned_cols=157 Identities=30% Similarity=0.443 Sum_probs=144.5
Q ss_pred ccccCCCCCcccccccccCCC-------CCccccCCHHHHHHHHHhhCC---------CcCCcEEEEEcCCccchHHHHH
Q 022295 122 LEKDVDGFHPLNIGKLAMKGR-------DPLFLPCTPKGCLELLKRSGV---------TIKGKRAVVVGRSNIVGLPVSL 185 (299)
Q Consensus 122 p~KDVDg~~~~n~g~l~~g~~-------~~~~~PcT~~av~~ll~~~~~---------~l~gk~vvViG~s~~vG~pla~ 185 (299)
|+|||||+|+.|+|+|+.|.. .++|+||||+||+++|++|++ +++||+|+|||||++||+|+|+
T Consensus 1 P~KDVDGl~~~n~g~l~~~~~~~~~~~~~~~~~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~ 80 (197)
T cd01079 1 PHKDVEGLSHKYIFNLYHNIRFLDPENRKKSILPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAA 80 (197)
T ss_pred CCCCcCCCCHHHHHHHhcCCccccccccCCCccCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHH
Confidence 799999999999999997731 158999999999999999977 8999999999999999999999
Q ss_pred HHhhCCCeEEEE---------------cCCC--CC----hhhhccCCcEEEEecCCCCc-CCCCccCCCeEEEEeeccCC
Q 022295 186 LLLKADATVTIV---------------HSHT--TD----PESIVREADIVIAAAGQAMM-IKGSWIKPGAAVIDVGTNAV 243 (299)
Q Consensus 186 lL~~~gatVtv~---------------~~~t--~~----l~~~~~~ADIVIsa~g~p~~-i~~~~vk~gavVIDvg~~~~ 243 (299)
||+++|||||+| |++| ++ +.+++++|||||+|+|+|+| |++||||||++|||+|+++
T Consensus 81 lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~~d~ik~GavVIDVGi~~- 159 (197)
T cd01079 81 LLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYKVPTELLKDGAICINFASIK- 159 (197)
T ss_pred HHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCCCCCccCHHHcCCCcEEEEcCCCc-
Confidence 999999999999 6776 46 78999999999999999999 9999999999999999874
Q ss_pred CCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHH
Q 022295 244 DDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRV 296 (299)
Q Consensus 244 ~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~ 296 (299)
|+| +++.++++++||| |||||++|||+|++++++++
T Consensus 160 -------------dvd-~~v~~~as~iTPv---VGpvTva~L~~Nlv~~~~~~ 195 (197)
T cd01079 160 -------------NFE-PSVKEKASIYVPS---IGKVTIAMLLRNLLRLYHNQ 195 (197)
T ss_pred -------------Ccc-HhHHhhcCEeCCC---cCHHHHHHHHHHHHHHHHHh
Confidence 344 7899999999998 99999999999999999865
No 39
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=100.00 E-value=3.5e-43 Score=296.62 Aligned_cols=136 Identities=37% Similarity=0.594 Sum_probs=130.1
Q ss_pred CCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCC
Q 022295 143 DPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAM 222 (299)
Q Consensus 143 ~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~ 222 (299)
++.|+||||+|++++|++|+++++||+|+|+|||..+|+|++.+|.++|++|++||++|+++++++++|||||+|+|+|+
T Consensus 4 ~~~~~p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~~ 83 (140)
T cd05212 4 TPLFVSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKPE 83 (140)
T ss_pred CCcccccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHH
Q 022295 223 MIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGA 293 (299)
Q Consensus 223 ~i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~ 293 (299)
+|+++|+|||++|+|+|+++. +|+++.++++++|||||||||||++|||+|+++++
T Consensus 84 ~i~~~~ikpGa~Vidvg~~~~---------------~~~~~~~~a~~~tPvpgGVGp~T~a~L~~n~~~~~ 139 (140)
T cd05212 84 KVPTEWIKPGATVINCSPTKL---------------SGDDVKESASLYVPMTGGVGKLTVAMRMQNMVRSV 139 (140)
T ss_pred ccCHHHcCCCCEEEEcCCCcc---------------cchhhHhhceEEcCCCCCchHHHHHHHHHHHHHhc
Confidence 999999999999999999862 15788899999999999999999999999999875
No 40
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=100.00 E-value=7.2e-43 Score=303.19 Aligned_cols=168 Identities=60% Similarity=0.981 Sum_probs=158.3
Q ss_pred ccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295 122 LEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT 201 (299)
Q Consensus 122 p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t 201 (299)
|+|||||++..|.|+++.+ ...|+|||+.|++++++++..+++||+|+|||+|+++|++++.+|.++|++|++++|++
T Consensus 1 ~~kdvdg~~~~~~~~~~~~--~~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 1 PEKDVDGLHPVNLGRLALG--RPGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred CCccccCCCccchhhHhcC--CCCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 6899999999999999976 57899999999999999999999999999999999889999999999999999999999
Q ss_pred CChhhhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhceeccCCCCccHHH
Q 022295 202 TDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMT 281 (299)
Q Consensus 202 ~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T 281 (299)
.++.+.+++||+||+|||+|++|++++++++.++||++.++..+ .++| |+|||+||+.+.+++.++||+||||||+|
T Consensus 79 ~~l~~~l~~aDiVIsat~~~~ii~~~~~~~~~viIDla~prdvd--~~~~-~~~G~~d~~~~~~~~~~~~~~pggvgp~t 155 (168)
T cd01080 79 KNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVIDVGINRVPD--KSGG-KLVGDVDFESAKEKASAITPVPGGVGPMT 155 (168)
T ss_pred hhHHHHHhhCCEEEEcCCCCceecHHHccCCeEEEEccCCCccc--ccCC-CeeCCcCHHHHHhhccCcCCCCCcChHHH
Confidence 99999999999999999999999999999999999999999755 2234 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 022295 282 VAMLLRNTLDGAK 294 (299)
Q Consensus 282 ~a~L~~n~v~a~~ 294 (299)
+++||+|++++++
T Consensus 156 ~a~l~~n~~~~~~ 168 (168)
T cd01080 156 VAMLMKNTVEAAK 168 (168)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998863
No 41
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=100.00 E-value=1e-35 Score=244.04 Aligned_cols=117 Identities=53% Similarity=0.807 Sum_probs=103.3
Q ss_pred eeeccHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHH
Q 022295 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKV 89 (299)
Q Consensus 10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i 89 (299)
++|+||++|++|+++++++++.|+++ |++|+|++|+||+||+|..|+++|.|+|+++||+++.+.||+++++++|++.|
T Consensus 1 ~iL~Gk~va~~i~~~l~~~i~~l~~~-~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i 79 (117)
T PF00763_consen 1 KILDGKPVAKEIKEELKEEIEKLKEK-GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELI 79 (117)
T ss_dssp EE--HHHHHHHHHHHHHHHHHHHHHC-T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHH
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHH
Confidence 48999999999999999999999988 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCC
Q 022295 90 HELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVD 127 (299)
Q Consensus 90 ~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVD 127 (299)
++||+|++|||||||+|||+|+|+++++++|+|.||||
T Consensus 80 ~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~KDVD 117 (117)
T PF00763_consen 80 EKLNEDPSVHGILVQLPLPKHIDERKILEAIDPEKDVD 117 (117)
T ss_dssp HHHHH-TT-SEEEEESSSSTTSHHHHHHHTS-GGGBTT
T ss_pred HHHhCCCCCCEEEEcCCCCCCccHHHHHhccCcccCCC
Confidence 99999999999999999999999999999999999998
No 42
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=99.90 E-value=1e-22 Score=190.51 Aligned_cols=224 Identities=17% Similarity=0.203 Sum_probs=175.9
Q ss_pred EEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCC---CCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccC
Q 022295 44 VVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQ---VSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEI 120 (299)
Q Consensus 44 ii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~---~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i 120 (299)
.-++|+.-+....=.+++.+++++|+++.|..|+-+ ++.++|.+.++.+.. .++.|++|++|+++.+ .++++.+
T Consensus 8 ~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~v~~~~l~~~~~~l~~-~~~~G~nVTiP~K~~v--~~~~D~~ 84 (284)
T PRK12549 8 AGLIGAGIQASLSPAMHEAEGDAQGLRYVYRLIDLDALGLTADALPELLDAAER-MGFAGLNITHPCKQAV--IPHLDEL 84 (284)
T ss_pred EEEECCCcccccCHHHHHHHHHHcCCCeEEEEEeeccccCCHHHHHHHHHHHHh-cCCCEEEECcCCHHHH--HHHhccC
Confidence 345675433344456899999999999999998622 347789999998875 4899999999999777 6788888
Q ss_pred Cc-cccCCCCCc-cc-ccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEE
Q 022295 121 SL-EKDVDGFHP-LN-IGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTI 196 (299)
Q Consensus 121 ~p-~KDVDg~~~-~n-~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv 196 (299)
+| .+.+.+++. ++ -|++. |++++ ..|+++.|+..+.++++|+|+|+|+|++ |++++..|...|+ +|++
T Consensus 85 ~~~A~~iGAvNTv~~~~g~l~-G~NTD------~~G~~~~l~~~~~~~~~k~vlIlGaGGa-araia~aL~~~G~~~I~I 156 (284)
T PRK12549 85 SDDARALGAVNTVVFRDGRRI-GHNTD------WSGFAESFRRGLPDASLERVVQLGAGGA-GAAVAHALLTLGVERLTI 156 (284)
T ss_pred CHHHHHhCCceEEEecCCEEE-EEcCC------HHHHHHHHHhhccCccCCEEEEECCcHH-HHHHHHHHHHcCCCEEEE
Confidence 88 778777643 33 34444 55554 7999999998777899999999999997 9999999999997 7999
Q ss_pred EcCCCC----------------------ChhhhccCCcEEEEecCC-----CC-cCCCCccCCCeEEEEeeccCCCCCcc
Q 022295 197 VHSHTT----------------------DPESIVREADIVIAAAGQ-----AM-MIKGSWIKPGAAVIDVGTNAVDDSTK 248 (299)
Q Consensus 197 ~~~~t~----------------------~l~~~~~~ADIVIsa~g~-----p~-~i~~~~vk~gavVIDvg~~~~~~~~~ 248 (299)
++++.. ++.+.++++|+||++|+. +. .++.++++++.+|+|+.|+|.+++
T Consensus 157 ~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~DivY~P~~T~-- 234 (284)
T PRK12549 157 FDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGMAKHPGLPLPAELLRPGLWVADIVYFPLETE-- 234 (284)
T ss_pred ECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCCCCCCCCCCCHHHcCCCcEEEEeeeCCCCCH--
Confidence 987521 223356789999988642 22 367788999999999999998763
Q ss_pred CCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298 (299)
Q Consensus 249 ~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~ 298 (299)
|-..++..|+ ++-+|.+ ||++|.+.+++.|++
T Consensus 235 -----------ll~~A~~~G~--~~~~G~~-----ML~~Qa~~~f~~wtg 266 (284)
T PRK12549 235 -----------LLRAARALGC--RTLDGGG-----MAVFQAVDAFELFTG 266 (284)
T ss_pred -----------HHHHHHHCCC--eEecCHH-----HHHHHHHHHHHHhcC
Confidence 6677788887 5566777 999999999999986
No 43
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=99.89 E-value=1.6e-22 Score=189.49 Aligned_cols=222 Identities=20% Similarity=0.305 Sum_probs=174.8
Q ss_pred EEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-
Q 022295 44 VVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL- 122 (299)
Q Consensus 44 ii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p- 122 (299)
.-++|+.-+...-=.+++.+++++|+++.|..|+ +.+++|.+.++.+.. .++.|++|++|++..+ .++++.++|
T Consensus 12 ~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~--v~~~~l~~~~~~~~~-~~~~G~nVT~P~K~~v--~~~ld~~~~~ 86 (289)
T PRK12548 12 LGLIGSPVGHSGSPAMYNYSFQKAGLDYAYLAFD--IPVDKVPDAIKAIKT-FNMRGANVTMPCKSEA--AKYMDELSPA 86 (289)
T ss_pred EEEEcCCcccccCHHHHHHHHHHcCCCEEEEEEe--cCHHHHHHHHHHHHH-CCCCEEEECccCHHHH--HHHhhcCCHH
Confidence 3456854333333458999999999999999996 778889999999876 4799999999999776 778888888
Q ss_pred cccCCCCCc-cc-ccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCe-EEEEcC
Q 022295 123 EKDVDGFHP-LN-IGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADAT-VTIVHS 199 (299)
Q Consensus 123 ~KDVDg~~~-~n-~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gat-Vtv~~~ 199 (299)
.+-+.+++. ++ -|++. |++++ ..|+++.|++++.+++||+++|+|+|++ |++++..|+..|++ |++++|
T Consensus 87 A~~iGavNTi~~~~g~l~-G~NTD------~~G~~~~l~~~~~~~~~k~vlI~GAGGa-grAia~~La~~G~~~V~I~~R 158 (289)
T PRK12548 87 ARIIGAVNTIVNDDGKLT-GHITD------GLGFVRNLREHGVDVKGKKLTVIGAGGA-ATAIQVQCALDGAKEITIFNI 158 (289)
T ss_pred HHHhCceeEEEeECCEEE-EEecC------HHHHHHHHHhcCCCcCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEeC
Confidence 777776643 23 35554 65555 7999999999988999999999999987 99999999999985 999987
Q ss_pred CC---C---------------------C------hhhhccCCcEEEEecC---CCC----cC-CCCccCCCeEEEEeecc
Q 022295 200 HT---T---------------------D------PESIVREADIVIAAAG---QAM----MI-KGSWIKPGAAVIDVGTN 241 (299)
Q Consensus 200 ~t---~---------------------~------l~~~~~~ADIVIsa~g---~p~----~i-~~~~vk~gavVIDvg~~ 241 (299)
+. . + +.+.+..+|+||++|+ .|+ .+ +.+++.++.+|+|+.|+
T Consensus 159 ~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~ 238 (289)
T PRK12548 159 KDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSVFRKDLVVADTVYN 238 (289)
T ss_pred CchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEecCC
Confidence 63 1 0 1123456799998885 232 24 55789999999999999
Q ss_pred CCCCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295 242 AVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298 (299)
Q Consensus 242 ~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~ 298 (299)
|.+++ |-..++..|+ ++-+|.+ ||++|.+++++.|++
T Consensus 239 P~~T~-------------ll~~A~~~G~--~~~~G~~-----ML~~Qa~~~f~lwtg 275 (289)
T PRK12548 239 PKKTK-------------LLEDAEAAGC--KTVGGLG-----MLLWQGAEAYKLYTG 275 (289)
T ss_pred CCCCH-------------HHHHHHHCCC--eeeCcHH-----HHHHHHHHHHHHhcC
Confidence 98763 6677888887 5667777 999999999999986
No 44
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=99.89 E-value=1.4e-22 Score=188.71 Aligned_cols=220 Identities=21% Similarity=0.320 Sum_probs=174.1
Q ss_pred EECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-cc
Q 022295 46 IVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-EK 124 (299)
Q Consensus 46 ~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-~K 124 (299)
.+|+.-+-..-=.+++.+++++|+++.|..|. +.+++|.+.++.+... ++.|++|++|++..+ .++++.++| .+
T Consensus 10 viG~pi~hS~SP~~hn~~~~~~gl~~~y~~~~--v~~~~l~~~~~~~~~~-~~~G~nVT~P~K~~~--~~~~d~~~~~A~ 84 (278)
T PRK00258 10 VIGNPIAHSKSPLIHNAAFKQLGLDGVYLAIL--VPPEDLEDAVKGFFAL-GGRGANVTVPFKEAA--FALADELSERAR 84 (278)
T ss_pred EECCchhcccCHHHHHHHHHHcCCCcEEEEEe--cCHHHHHHHHHHHHhC-CCCEEEECcCCHHHH--HHHhhcCCHHHH
Confidence 45743222233357899999999999999985 7778899999999875 799999999999776 778888888 78
Q ss_pred cCCCCCcc-c-ccccccCCCCCccccCCHHHHHHHHHh-hCCCcCCcEEEEEcCCccchHHHHHHHhhCC-CeEEEEcCC
Q 022295 125 DVDGFHPL-N-IGKLAMKGRDPLFLPCTPKGCLELLKR-SGVTIKGKRAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSH 200 (299)
Q Consensus 125 DVDg~~~~-n-~g~l~~g~~~~~~~PcT~~av~~ll~~-~~~~l~gk~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~ 200 (299)
.+..++.+ + -|++. |+++ +..|+++.|++ .+.++++|+|+|+|+|++ |+.++..|..+| ++|++++|+
T Consensus 85 ~igavNtv~~~~g~l~-G~NT------D~~G~~~~l~~~~~~~~~~k~vlVlGaGg~-a~ai~~aL~~~g~~~V~v~~R~ 156 (278)
T PRK00258 85 LIGAVNTLVLEDGRLI-GDNT------DGIGFVRALEERLGVDLKGKRILILGAGGA-ARAVILPLLDLGVAEITIVNRT 156 (278)
T ss_pred HhCCceEEEeeCCEEE-EEcc------cHHHHHHHHHhccCCCCCCCEEEEEcCcHH-HHHHHHHHHHcCCCEEEEEeCC
Confidence 87777433 4 24443 5544 48999999986 678999999999999886 999999999999 689999876
Q ss_pred CCC-------------------hhhhccCCcEEEEecCCCC-------cCCCCccCCCeEEEEeeccCCCCCccCCCcee
Q 022295 201 TTD-------------------PESIVREADIVIAAAGQAM-------MIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRL 254 (299)
Q Consensus 201 t~~-------------------l~~~~~~ADIVIsa~g~p~-------~i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl 254 (299)
... +.+.+.++|+||++|+... .++.++++++.+|+|+.|+|.+++
T Consensus 157 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~T~-------- 228 (278)
T PRK00258 157 VERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLPTP-------- 228 (278)
T ss_pred HHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCCCCH--------
Confidence 321 1244578999999987431 245678999999999999987652
Q ss_pred eccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295 255 VGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298 (299)
Q Consensus 255 ~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~ 298 (299)
|.+.+++.|+ ++-+|.+ ||++|.+.+++.|++
T Consensus 229 -----ll~~A~~~G~--~~~~G~~-----Ml~~Qa~~~f~~wtg 260 (278)
T PRK00258 229 -----FLAWAKAQGA--RTIDGLG-----MLVHQAAEAFELWTG 260 (278)
T ss_pred -----HHHHHHHCcC--eecCCHH-----HHHHHHHHHHHHHcC
Confidence 6677888887 5667777 999999999999986
No 45
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=99.89 E-value=2.1e-22 Score=188.70 Aligned_cols=221 Identities=19% Similarity=0.243 Sum_probs=172.9
Q ss_pred EEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-c
Q 022295 45 VIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-E 123 (299)
Q Consensus 45 i~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-~ 123 (299)
-++|+.-+....=.+++.+++++|+++.|..|+ +.+++|.+.++.++.. ++.|++|++|++..+ ..+++.++| .
T Consensus 11 gliG~Pi~hSlSP~ihn~~f~~~gl~~~Y~~~~--v~~~~l~~~~~~l~~~-~~~G~nVTiP~K~~~--~~~~D~l~~~A 85 (288)
T PRK12749 11 GLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFE--VDNDSFPGAIEGLKAL-KMRGTGVSMPNKQLA--CEYVDELTPAA 85 (288)
T ss_pred EEECCCcccccCHHHHHHHHHHcCCCeEEEEEe--cCHHHHHHHHHHHHhc-CCCEEEECcCCHHHH--HHHhccCCHHH
Confidence 346743333333458999999999999999986 7788999999999764 799999999999766 778888888 7
Q ss_pred ccCCCCCcc-c-ccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC
Q 022295 124 KDVDGFHPL-N-IGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH 200 (299)
Q Consensus 124 KDVDg~~~~-n-~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~ 200 (299)
+.+.+++.+ + -|++. |+++| ..|+++.|++.+.+++||+++|+|+|++ +|+++..|..+|+ .|+|++|+
T Consensus 86 ~~iGAVNTv~~~~g~l~-G~NTD------~~Gf~~~l~~~~~~~~~k~vlvlGaGGa-arAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 86 KLVGAINTIVNDDGYLR-GYNTD------GTGHIRAIKESGFDIKGKTMVLLGAGGA-STAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred HHhCceeEEEccCCEEE-EEecC------HHHHHHHHHhcCCCcCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEeCC
Confidence 887776432 2 34544 55454 7999999999999999999999999998 9999999999996 89999986
Q ss_pred CC-----------------------Ch------hhhccCCcEEEEecCC---CC----c-CCCCccCCCeEEEEeeccCC
Q 022295 201 TT-----------------------DP------ESIVREADIVIAAAGQ---AM----M-IKGSWIKPGAAVIDVGTNAV 243 (299)
Q Consensus 201 t~-----------------------~l------~~~~~~ADIVIsa~g~---p~----~-i~~~~vk~gavVIDvg~~~~ 243 (299)
.. ++ .+.+.++|+||++|+. |+ + ++.+.++++.+|+|+.|+|.
T Consensus 158 ~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~ 237 (288)
T PRK12749 158 DEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPH 237 (288)
T ss_pred ccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEEECCCCCCCCCCCCCCCCcHHHCCCCCEEEEecCCCc
Confidence 21 01 1134578999988862 32 1 24466889999999999998
Q ss_pred CCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295 244 DDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298 (299)
Q Consensus 244 ~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~ 298 (299)
+++ |-..++..|+ ++-+|.+ ||++|.+.+++.|++
T Consensus 238 ~T~-------------ll~~A~~~G~--~~~~Gl~-----ML~~Qa~~~f~lwtg 272 (288)
T PRK12749 238 MTK-------------LLQQAQQAGC--KTIDGYG-----MLLWQGAEQFTLWTG 272 (288)
T ss_pred cCH-------------HHHHHHHCCC--eEECCHH-----HHHHHHHHHHHHhcC
Confidence 763 6677788887 4555666 999999999999986
No 46
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=99.89 E-value=2.4e-22 Score=186.94 Aligned_cols=223 Identities=15% Similarity=0.176 Sum_probs=174.9
Q ss_pred CCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHH
Q 022295 38 KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVL 117 (299)
Q Consensus 38 ~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~ 117 (299)
..++|..=++| +|-|++-. +++.+++++|+++.|..|+ .++|.+.++.+.. .++.|++|++|+++.+ ..++
T Consensus 7 ~~~~~~~gliG-~P~~~Sp~-ihn~~f~~~gl~~~Y~~~~----~~~l~~~~~~l~~-~~~~G~nVT~P~K~~~--~~~l 77 (272)
T PRK12550 7 KDTQLCISLAA-RPSNFGTR-FHNYLYEALGLNFLYKAFT----TTDLTAAIGGVRA-LGIRGCAVSMPFKEAV--IPLV 77 (272)
T ss_pred CCceEEEEEEc-cchhcCHH-HHHHHHHHcCCCcEEEecC----HhHHHHHHHHHHh-cCCCEEEECcCCHHHH--HHHh
Confidence 45676555678 45777766 9999999999999999985 3678888888876 3799999999999777 7788
Q ss_pred ccCCc-cccCCCCCcc-c-ccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-e
Q 022295 118 GEISL-EKDVDGFHPL-N-IGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-T 193 (299)
Q Consensus 118 ~~i~p-~KDVDg~~~~-n-~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-t 193 (299)
+.++| .+.+.+++.+ + -|++. |++++ ..|+++.|++.+.+ .+|+++|+|+|++ +|+++..|.+.|+ +
T Consensus 78 D~l~~~A~~iGAVNTi~~~~g~l~-G~NTD------~~Gf~~~L~~~~~~-~~~~vlilGaGGa-arAi~~aL~~~g~~~ 148 (272)
T PRK12550 78 DELDPSAQAIESVNTIVNTDGHLK-AYNTD------YIAIAKLLASYQVP-PDLVVALRGSGGM-AKAVAAALRDAGFTD 148 (272)
T ss_pred hcCCHHHHHhCCeeEEEeeCCEEE-EEecC------HHHHHHHHHhcCCC-CCCeEEEECCcHH-HHHHHHHHHHCCCCE
Confidence 88888 7887776432 3 34443 55444 79999999988876 4679999999998 9999999999997 6
Q ss_pred EEEEcCCCCChh-----------hh--ccCCcEEEEecC---CCC------cCCCCccCCCeEEEEeeccCCCCCccCCC
Q 022295 194 VTIVHSHTTDPE-----------SI--VREADIVIAAAG---QAM------MIKGSWIKPGAAVIDVGTNAVDDSTKKSG 251 (299)
Q Consensus 194 Vtv~~~~t~~l~-----------~~--~~~ADIVIsa~g---~p~------~i~~~~vk~gavVIDvg~~~~~~~~~~~g 251 (299)
|+|++|+....+ +. ...+|+||+||+ .|+ .++.++++++.+|+|+.|+|.+++
T Consensus 149 i~i~nR~~~~a~~la~~~~~~~~~~~~~~~~dlvINaTp~Gm~~~~~~~~~pi~~~~l~~~~~v~D~vY~P~~T~----- 223 (272)
T PRK12550 149 GTIVARNEKTGKALAELYGYEWRPDLGGIEADILVNVTPIGMAGGPEADKLAFPEAEIDAASVVFDVVALPAETP----- 223 (272)
T ss_pred EEEEeCCHHHHHHHHHHhCCcchhhcccccCCEEEECCccccCCCCccccCCCCHHHcCCCCEEEEeecCCccCH-----
Confidence 999998632111 11 245899998886 221 367788999999999999997763
Q ss_pred ceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295 252 YRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298 (299)
Q Consensus 252 ~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~ 298 (299)
|-..++..|+ ++-.|.+ ||++|.+++++.|++
T Consensus 224 --------ll~~A~~~G~--~~i~Gl~-----MLi~Qa~~~f~lwtg 255 (272)
T PRK12550 224 --------LIRYARARGK--TVITGAE-----VIALQAVEQFVLYTG 255 (272)
T ss_pred --------HHHHHHHCcC--eEeCCHH-----HHHHHHHHHHHHHhC
Confidence 6677788887 5556777 999999999999986
No 47
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=99.89 E-value=3.5e-22 Score=186.51 Aligned_cols=210 Identities=22% Similarity=0.327 Sum_probs=171.2
Q ss_pred HHHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-cccCCCC-Ccccc
Q 022295 57 VSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-EKDVDGF-HPLNI 134 (299)
Q Consensus 57 ~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-~KDVDg~-~~~n~ 134 (299)
=.+++..++++|+++.|..|. +..++|.+.++.+. +.++.|.+|++|+++.+ ..+++.+++ .+-+..+ |.++.
T Consensus 22 P~~Hn~~~~~lGl~~~Y~a~~--v~~~~l~~~v~~~~-~~g~~G~NVTiP~Ke~~--~~~lD~l~~~A~~iGAVNTl~~~ 96 (283)
T COG0169 22 PRMHNAAFRALGLDYVYLAFE--VPPEDLPEAVSGIR-ALGFRGLNVTIPFKEAA--LPLLDELSPRARLIGAVNTLVRE 96 (283)
T ss_pred HHHHHHHHHHcCCCceEEEee--cCHHHHHHHHHHHH-hcCCCeeEECCccHHHH--HHHHhcCCHHHHHhCCceEEEEc
Confidence 458999999999999999996 67899999999998 57999999999999777 778899988 7777776 44454
Q ss_pred --cccccCCCCCccccCCHHHHHHHHHhhC--CCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCCCC---h--
Q 022295 135 --GKLAMKGRDPLFLPCTPKGCLELLKRSG--VTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHTTD---P-- 204 (299)
Q Consensus 135 --g~l~~g~~~~~~~PcT~~av~~ll~~~~--~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t~~---l-- 204 (299)
|++. |+++| ..|+.+.|++++ .+.+|++|+|+|+||+ +|+++..|++.|+ +|+|+||+... |
T Consensus 97 ~~g~l~-G~NTD------~~G~~~~L~~~~~~~~~~~~~vlilGAGGA-arAv~~aL~~~g~~~i~V~NRt~~ra~~La~ 168 (283)
T COG0169 97 DDGKLR-GYNTD------GIGFLRALKEFGLPVDVTGKRVLILGAGGA-ARAVAFALAEAGAKRITVVNRTRERAEELAD 168 (283)
T ss_pred cCCEEE-EEcCC------HHHHHHHHHhcCCCcccCCCEEEEECCcHH-HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 5555 66666 799999999987 5677999999999998 9999999999995 79999986311 1
Q ss_pred --------------h--hhccCCcEEEEecCC---CC----cCCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCch
Q 022295 205 --------------E--SIVREADIVIAAAGQ---AM----MIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFH 261 (299)
Q Consensus 205 --------------~--~~~~~ADIVIsa~g~---p~----~i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~ 261 (299)
. +...++|+||++|+. ++ +++.+.++++.+|+|+.|+|.+++ |-
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~vY~P~~Tp-------------lL 235 (283)
T COG0169 169 LFGELGAAVEAAALADLEGLEEADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVVYNPLETP-------------LL 235 (283)
T ss_pred HhhhcccccccccccccccccccCEEEECCCCCCCCCCCCCCCcHHhcCcCCEEEEeccCCCCCH-------------HH
Confidence 1 111258999988872 32 456788999999999999998774 66
Q ss_pred hhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhcC
Q 022295 262 EACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIEL 299 (299)
Q Consensus 262 ~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~~ 299 (299)
+.++..++. +-.|.| ||++|.+++++.|++.
T Consensus 236 ~~A~~~G~~--~idGl~-----Mlv~Qaa~aF~lwtg~ 266 (283)
T COG0169 236 REARAQGAK--TIDGLG-----MLVHQAAEAFELWTGV 266 (283)
T ss_pred HHHHHcCCe--EECcHH-----HHHHHHHHHHHHHhCC
Confidence 778887875 445666 9999999999999863
No 48
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=99.88 E-value=9.3e-22 Score=183.73 Aligned_cols=222 Identities=15% Similarity=0.184 Sum_probs=170.4
Q ss_pred EEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-
Q 022295 44 VVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL- 122 (299)
Q Consensus 44 ii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p- 122 (299)
.-++|+.-+...-=.+++.+++++|+++.|..|+. .+.++|.+.++.+.. ++.|++|++|++..+ .++++.++|
T Consensus 8 ~~liG~Pi~hS~SP~ihn~~f~~~gl~~~y~~~~~-~~~~~l~~~~~~~~~--~~~G~nVT~P~K~~~--~~~~d~~~~~ 82 (282)
T TIGR01809 8 AFIIGKPIAHSRSPHLHNAGYEILGLPDKTYEFET-CSAEELKEVLSGFGP--QFGGASVTIPLKFAI--LRFADEHTDR 82 (282)
T ss_pred EEEEcCCchhccCHHHHHHHHHHcCCCcEEEeeec-CCHHHHHHHHHhcCC--CCcEEEECCCCHHHH--HHHhhcCCHH
Confidence 45578533333334588999999999999999862 235789999998843 799999999999766 678888888
Q ss_pred cccCCCCCcc-c--ccccccCCCCCccccCCHHHHHHHHHhhCC--CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEE
Q 022295 123 EKDVDGFHPL-N--IGKLAMKGRDPLFLPCTPKGCLELLKRSGV--TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTI 196 (299)
Q Consensus 123 ~KDVDg~~~~-n--~g~l~~g~~~~~~~PcT~~av~~ll~~~~~--~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv 196 (299)
.|-+..++.+ + -|++. |+++| ..|+++.|++.+. +++||+|+|||+|++ ||.++..|...|+ +|+|
T Consensus 83 A~~iGAVNTv~~~~~g~l~-G~NTD------~~G~~~~l~~~~~~~~~~~k~vlvlGaGGa-arai~~aL~~~G~~~i~I 154 (282)
T TIGR01809 83 ASLIGSVNTLLRTQNGIWK-GDNTD------WDGIAGALANIGKFEPLAGFRGLVIGAGGT-SRAAVYALASLGVTDITV 154 (282)
T ss_pred HHHhCceeEEEEcCCCcEE-EecCC------HHHHHHHHHhhCCccccCCceEEEEcCcHH-HHHHHHHHHHcCCCeEEE
Confidence 7787776433 3 24444 65555 7999999998874 689999999999997 9999999999996 7999
Q ss_pred EcCCCC----------------------ChhhhccCCcEEEEecCCCCcCCCCc------------cCCCeEEEEeeccC
Q 022295 197 VHSHTT----------------------DPESIVREADIVIAAAGQAMMIKGSW------------IKPGAAVIDVGTNA 242 (299)
Q Consensus 197 ~~~~t~----------------------~l~~~~~~ADIVIsa~g~p~~i~~~~------------vk~gavVIDvg~~~ 242 (299)
++|+.. ++.+.+.++|+||++|+....++.+. ++++.+|+|+.|+|
T Consensus 155 ~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P 234 (282)
T TIGR01809 155 INRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADVPADYVDLFATVPFLLLKRKSSEGIFLDAAYDP 234 (282)
T ss_pred EeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCCCCCHHHhhhhhhhhccccCCCCcEEEEEeeCC
Confidence 997521 11234577899999998644343322 34678999999999
Q ss_pred CCCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295 243 VDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298 (299)
Q Consensus 243 ~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~ 298 (299)
.+++ |...++..++ ++-+|.+ ||++|.+.+++.|++
T Consensus 235 ~~T~-------------ll~~A~~~G~--~~~~Gl~-----MLv~Qa~~~f~lwtg 270 (282)
T TIGR01809 235 WPTP-------------LVAIVSAAGW--RVISGLQ-----MLLHQGFAQFEQWTG 270 (282)
T ss_pred CCCH-------------HHHHHHHCCC--EEECcHH-----HHHHHHHHHHHHHHC
Confidence 8763 6677888886 4556777 999999999999986
No 49
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=99.87 E-value=1.1e-21 Score=183.39 Aligned_cols=222 Identities=17% Similarity=0.207 Sum_probs=173.1
Q ss_pred EECCCcccHHHHHHHHHHHHHcCCceeeecCCCC---CCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc
Q 022295 46 IVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQ---VSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL 122 (299)
Q Consensus 46 ~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~---~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p 122 (299)
++|+.-+....=.+++.+++++|+++.|..|+-. +++++|.+.++.+... ++.|++|++|++..+ ..+++.++|
T Consensus 9 liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~~~~~~l~~~~~~~~~~-~~~G~nVT~P~K~~~--~~~lD~l~~ 85 (283)
T PRK14027 9 LIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYL-GFNGLNITHPYKQAV--LPLLDEVSE 85 (283)
T ss_pred EECCCccccCCHHHHHHHHHHcCCCeEEEEEecccccCCHHHHHHHHHHHHhc-CCCEEEECccCHHHH--HHHhhhCCH
Confidence 4574333333345899999999999999998622 3457899999988764 899999999999776 778888988
Q ss_pred -cccCCCCCcc-c--ccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEE
Q 022295 123 -EKDVDGFHPL-N--IGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIV 197 (299)
Q Consensus 123 -~KDVDg~~~~-n--~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~ 197 (299)
.+.+..++.+ + -|++. |+++| ..|+++.|++.+.+++||+++|+|+||+ ||+++..|...|+ +++|+
T Consensus 86 ~A~~iGAVNTv~~~~~g~l~-G~NTD------~~Gf~~~L~~~~~~~~~k~vlilGaGGa-arAi~~aL~~~g~~~i~i~ 157 (283)
T PRK14027 86 QATQLGAVNTVVIDATGHTT-GHNTD------VSGFGRGMEEGLPNAKLDSVVQVGAGGV-GNAVAYALVTHGVQKLQVA 157 (283)
T ss_pred HHHHhCCceEEEECCCCcEE-EEcCC------HHHHHHHHHhcCcCcCCCeEEEECCcHH-HHHHHHHHHHCCCCEEEEE
Confidence 8888877543 3 35544 65555 7999999998767889999999999997 9999999999996 79999
Q ss_pred cCCCC---Ch---------------------hhhccCCcEEEEecCC---CC---cCCCCccCCCeEEEEeeccCCCCCc
Q 022295 198 HSHTT---DP---------------------ESIVREADIVIAAAGQ---AM---MIKGSWIKPGAAVIDVGTNAVDDST 247 (299)
Q Consensus 198 ~~~t~---~l---------------------~~~~~~ADIVIsa~g~---p~---~i~~~~vk~gavVIDvg~~~~~~~~ 247 (299)
+|+.. .+ .+.+..+|+||++|+. ++ .++.+.+.++.+|+|+.|+|.+++
T Consensus 158 nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~Gm~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~- 236 (283)
T PRK14027 158 DLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIETE- 236 (283)
T ss_pred cCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCCCCCCCCCCCCHHHcCCCcEEEEcccCCCCCH-
Confidence 87521 01 1234568999988862 22 256677889999999999998773
Q ss_pred cCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295 248 KKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298 (299)
Q Consensus 248 ~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~ 298 (299)
|-..++..|+ ++-+|.+ ||++|.+++++.|++
T Consensus 237 ------------ll~~A~~~G~--~~~~Gl~-----MLv~Qa~~~f~lw~G 268 (283)
T PRK14027 237 ------------LLKAARALGC--ETLDGTR-----MAIHQAVDAFRLFTG 268 (283)
T ss_pred ------------HHHHHHHCCC--EEEccHH-----HHHHHHHHHHHHHhC
Confidence 6677888887 4556777 999999999999986
No 50
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=99.87 E-value=1.4e-21 Score=181.02 Aligned_cols=219 Identities=21% Similarity=0.247 Sum_probs=170.4
Q ss_pred ECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-ccc
Q 022295 47 VGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-EKD 125 (299)
Q Consensus 47 vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-~KD 125 (299)
+|+.-+-..-=.+++.+++++|+++.|..|+ +.+++|.+.++.+... ++.|++|++|+++.+ .++++.++| .+-
T Consensus 6 iG~pi~hS~SP~~hn~~~~~~g~~~~y~~~~--v~~~~l~~~~~~~~~~-~~~G~nVT~P~K~~~--~~~~d~~~~~A~~ 80 (270)
T TIGR00507 6 IGNPIAHSKSPLIHNAFFKQLGLEGPYIAFL--VPPDDLEDALSGFFAL-GFKGANVTSPFKEEA--FQFLDEIDERAKL 80 (270)
T ss_pred ECCccccccCHHHHHHHHHHcCCCcEEEEEe--cCHHHHHHHHHHHHhc-CCCEEEECcCCHHHH--HHHhhhCCHHHHH
Confidence 4533222333458899999999999999996 7778899999999764 799999999999766 678888888 778
Q ss_pred CCCCCcc-c-ccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC
Q 022295 126 VDGFHPL-N-IGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD 203 (299)
Q Consensus 126 VDg~~~~-n-~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~ 203 (299)
+.+++.+ + -|++. |+++ +..|+++.|++.+...++|+++|+|.|++ |++++..|+..|+.|++++++...
T Consensus 81 ~gavNti~~~~g~l~-g~NT------D~~G~~~~l~~~~~~~~~k~vliiGaGg~-g~aia~~L~~~g~~v~v~~R~~~~ 152 (270)
T TIGR00507 81 AGAVNTLKLEDGKLV-GYNT------DGIGLVSDLERLIPLRPNQRVLIIGAGGA-ARAVALPLLKADCNVIIANRTVSK 152 (270)
T ss_pred hCCceEEEeeCCEEE-EEcC------CHHHHHHHHHhcCCCccCCEEEEEcCcHH-HHHHHHHHHHCCCEEEEEeCCHHH
Confidence 7776433 3 34443 5444 48999999998777788999999999875 999999999999999999876321
Q ss_pred h------------------hh-hccCCcEEEEecCC---CC----cCCCCccCCCeEEEEeeccCCCCCccCCCceeecc
Q 022295 204 P------------------ES-IVREADIVIAAAGQ---AM----MIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGD 257 (299)
Q Consensus 204 l------------------~~-~~~~ADIVIsa~g~---p~----~i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GD 257 (299)
. .+ ...++|+||++|+. +. .++.++++++.+|+|+.|++.+++
T Consensus 153 ~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p~~T~----------- 221 (270)
T TIGR00507 153 AEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNPGETP----------- 221 (270)
T ss_pred HHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCCCCCH-----------
Confidence 1 11 23578999999985 22 245567899999999999986552
Q ss_pred CCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295 258 VDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298 (299)
Q Consensus 258 vdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~ 298 (299)
|.+.++..++ ++-.|.+ ||++|.+.+++.|++
T Consensus 222 --ll~~A~~~G~--~~vdG~~-----Ml~~Qa~~~f~~w~g 253 (270)
T TIGR00507 222 --FLAEAKSLGT--KTIDGLG-----MLVAQAALAFELWTG 253 (270)
T ss_pred --HHHHHHHCCC--eeeCCHH-----HHHHHHHHHHHHHcC
Confidence 5677777786 4556777 999999999999986
No 51
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=99.82 E-value=3.2e-19 Score=179.77 Aligned_cols=220 Identities=19% Similarity=0.248 Sum_probs=169.6
Q ss_pred EEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-
Q 022295 44 VVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL- 122 (299)
Q Consensus 44 ii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p- 122 (299)
.-++|+.-+-..-=.+++.+++++|+++.|..|+ + ++|.+.++.++. +++.|++|++|++..+ ..+++.++|
T Consensus 255 ~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~--v--~~l~~~~~~l~~-~~~~G~nVTiP~K~~v--~~~lD~~~~~ 327 (529)
T PLN02520 255 YGIIGKPVGHSKSPILHNEAFKSVGFNGVYVHLL--V--DDLAKFLQTYSS-PDFAGFSCTIPHKEDA--LKCCDEVDPI 327 (529)
T ss_pred EEEEcCCcccccCHHHHHHHHHHCCCCcEEEEee--h--hhHHHHHHHHhh-CCCCEEEECcCCHHHH--HHHhccCCHH
Confidence 3467853333333368999999999999999996 3 467777877765 5899999999999777 778889998
Q ss_pred cccCCCCCcc-c---ccccccCCCCCccccCCHHHHHHHHHhh----------CCCcCCcEEEEEcCCccchHHHHHHHh
Q 022295 123 EKDVDGFHPL-N---IGKLAMKGRDPLFLPCTPKGCLELLKRS----------GVTIKGKRAVVVGRSNIVGLPVSLLLL 188 (299)
Q Consensus 123 ~KDVDg~~~~-n---~g~l~~g~~~~~~~PcT~~av~~ll~~~----------~~~l~gk~vvViG~s~~vG~pla~lL~ 188 (299)
.+.+.+++.+ + -|++. |++++ ..|+++.|++. +.++++|+++|+|+|++ |++++..|+
T Consensus 328 A~~iGAVNTvv~~~~~g~l~-G~NTD------~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGa-grAia~~L~ 399 (529)
T PLN02520 328 AKSIGAINTIIRRPSDGKLV-GYNTD------YIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGA-GKALAYGAK 399 (529)
T ss_pred HHHhCCceEEEEeCCCCEEE-EEccc------HHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHH-HHHHHHHHH
Confidence 8888887543 3 25554 65555 79999999852 56789999999999986 999999999
Q ss_pred hCCCeEEEEcCCCCC---h--------------hhh-ccCCcEEEEecC---CCC----cCCCCccCCCeEEEEeeccCC
Q 022295 189 KADATVTIVHSHTTD---P--------------ESI-VREADIVIAAAG---QAM----MIKGSWIKPGAAVIDVGTNAV 243 (299)
Q Consensus 189 ~~gatVtv~~~~t~~---l--------------~~~-~~~ADIVIsa~g---~p~----~i~~~~vk~gavVIDvg~~~~ 243 (299)
++|++|++++++... + .+. ...+|+||++++ .|+ .++.++++++.+|+|+.|+|.
T Consensus 400 ~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~~~~pl~~~~l~~~~~v~D~vY~P~ 479 (529)
T PLN02520 400 EKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNVDETPISKHALKHYSLVFDAVYTPK 479 (529)
T ss_pred HCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCCCCCCcccHhhCCCCCEEEEeccCCC
Confidence 999999999875221 1 111 235789997775 232 266788999999999999998
Q ss_pred CCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295 244 DDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298 (299)
Q Consensus 244 ~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~ 298 (299)
+++ |-..++.+|+ ++-.|.+ ||++|.+.+++.|++
T Consensus 480 ~T~-------------ll~~A~~~G~--~~~~Gl~-----MLv~Qa~~~f~lwtg 514 (529)
T PLN02520 480 ITR-------------LLREAEESGA--IIVSGTE-----MFIRQAYEQFERFTG 514 (529)
T ss_pred cCH-------------HHHHHHHCCC--eEeCcHH-----HHHHHHHHHHHHHhC
Confidence 763 5677888887 5556666 999999999999986
No 52
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=99.81 E-value=3.7e-19 Score=177.31 Aligned_cols=218 Identities=17% Similarity=0.250 Sum_probs=169.0
Q ss_pred EEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc-c
Q 022295 45 VIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL-E 123 (299)
Q Consensus 45 i~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p-~ 123 (299)
-.+|+.-+-..-=.+++.+++++|+++.|..|+ +.+++|.+.++.+.. +++.|++|++|++..+ ..+++.++| .
T Consensus 219 ~liG~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~--v~~~~l~~~~~~~~~-~~~~G~nVT~P~K~~v--~~~~d~~~~~A 293 (477)
T PRK09310 219 GLIGDPVDRSISHLSHNPLFSQLSLNCPYIKLP--LTPQELPKFFSTIRD-LPFLGLSVTMPLKTAV--LDFLDKLDPSV 293 (477)
T ss_pred EEECCCcccccCHHHHHHHHHHcCCCcEEEEee--cCHHHHHHHHHHHHh-CCCCEEEECccCHHHH--HHHhccCCHHH
Confidence 467854333333457999999999999999996 777788888888866 4799999999999766 678888888 7
Q ss_pred ccCCCCCcc-c-ccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295 124 KDVDGFHPL-N-IGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT 201 (299)
Q Consensus 124 KDVDg~~~~-n-~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t 201 (299)
+-+.+++.+ + -|++. |++++ ..|+++.|++.+.+++|++++|+|.|++ |++++..|.+.|++|++++++.
T Consensus 294 ~~iGAVNTv~~~~g~l~-G~NTD------~~G~~~~l~~~~~~~~~k~vlIiGaGgi-G~aia~~L~~~G~~V~i~~R~~ 365 (477)
T PRK09310 294 KLCGSCNTLVFRNGKIE-GYNTD------GEGLFSLLKQKNIPLNNQHVAIVGAGGA-AKAIATTLARAGAELLIFNRTK 365 (477)
T ss_pred HHhCcceEEEeeCCEEE-EEecC------HHHHHHHHHhcCCCcCCCEEEEEcCcHH-HHHHHHHHHHCCCEEEEEeCCH
Confidence 888777433 3 35554 65555 7999999999999999999999999875 9999999999999999998753
Q ss_pred CChh----------------hhccCCcEEEEecCCCCcCCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhh
Q 022295 202 TDPE----------------SIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACK 265 (299)
Q Consensus 202 ~~l~----------------~~~~~ADIVIsa~g~p~~i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~ 265 (299)
...+ ..+.++|+||++++..-.+. +.+. .+|+|+.|+|.+++ |...++
T Consensus 366 ~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g~~~~-~~l~--~~v~D~~Y~P~~T~-------------ll~~A~ 429 (477)
T PRK09310 366 AHAEALASRCQGKAFPLESLPELHRIDIIINCLPPSVTIP-KAFP--PCVVDINTLPKHSP-------------YTQYAR 429 (477)
T ss_pred HHHHHHHHHhccceechhHhcccCCCCEEEEcCCCCCcch-hHHh--hhEEeccCCCCCCH-------------HHHHHH
Confidence 2111 11467899999997543333 2333 38999999987652 567777
Q ss_pred hhceeccCCCCccHHHHHHHHHHHHHHHHHHhc
Q 022295 266 VAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298 (299)
Q Consensus 266 ~a~~iTPVPGGVGp~T~a~L~~n~v~a~~~~~~ 298 (299)
..|+ ++-+|.+ ||++|.+.+++.|++
T Consensus 430 ~~G~--~~~~G~~-----Ml~~Qa~~~f~lw~g 455 (477)
T PRK09310 430 SQGS--SIIYGYE-----MFAEQALLQFRLWFP 455 (477)
T ss_pred HCcC--EEECcHH-----HHHHHHHHHHHHHcC
Confidence 7887 4556777 999999999999986
No 53
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.61 E-value=3e-15 Score=140.87 Aligned_cols=130 Identities=25% Similarity=0.390 Sum_probs=105.1
Q ss_pred CHHH-HHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC----------------ChhhhccCCc
Q 022295 150 TPKG-CLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT----------------DPESIVREAD 212 (299)
Q Consensus 150 T~~a-v~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~----------------~l~~~~~~AD 212 (299)
|+.+ +.+.++++++++.|++|+|+|.|.+ |++++..|...|++|++++++.. ++.+.++++|
T Consensus 134 ~aegav~~a~~~~~~~l~g~kvlViG~G~i-G~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aD 212 (296)
T PRK08306 134 TAEGAIMMAIEHTPITIHGSNVLVLGFGRT-GMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKID 212 (296)
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEECCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCC
Confidence 4444 6677888899999999999999885 99999999999999999988742 4567789999
Q ss_pred EEEEecCCCCcCCCCc---cCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhh---hceeccCCCCccHHHHHHHH
Q 022295 213 IVIAAAGQAMMIKGSW---IKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKV---AGCVTPVPGGVGPMTVAMLL 286 (299)
Q Consensus 213 IVIsa~g~p~~i~~~~---vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~---a~~iTPVPGGVGp~T~a~L~ 286 (299)
+||++++. .+++.++ +++|+++||+++++ |++||+.+.+. +.+.+++||+|+|+|.+.++
T Consensus 213 iVI~t~p~-~~i~~~~l~~~~~g~vIIDla~~p-------------ggtd~~~a~~~Gv~~~~~~~lpg~vap~ta~~~~ 278 (296)
T PRK08306 213 IIFNTIPA-LVLTKEVLSKMPPEALIIDLASKP-------------GGTDFEYAEKRGIKALLAPGLPGKVAPKTAGQIL 278 (296)
T ss_pred EEEECCCh-hhhhHHHHHcCCCCcEEEEEccCC-------------CCcCeeehhhCCeEEEEECCCCccCCHHHHHHHH
Confidence 99999864 3466654 68999999999875 44678555443 44558999999999999999
Q ss_pred HHHHHHHH
Q 022295 287 RNTLDGAK 294 (299)
Q Consensus 287 ~n~v~a~~ 294 (299)
.|.+..+-
T Consensus 279 ~~~i~~~l 286 (296)
T PRK08306 279 ANVLSQLL 286 (296)
T ss_pred HHHHHHHH
Confidence 99887663
No 54
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.50 E-value=9.1e-14 Score=130.41 Aligned_cols=128 Identities=27% Similarity=0.424 Sum_probs=100.9
Q ss_pred CCHHH-HHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC----------------ChhhhccCC
Q 022295 149 CTPKG-CLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT----------------DPESIVREA 211 (299)
Q Consensus 149 cT~~a-v~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~----------------~l~~~~~~A 211 (299)
+|+.+ +...++.+++++.||+++|+|.|++ |+.++..|...|++|++++++.. ++.+.++++
T Consensus 132 ~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~i-G~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~a 210 (287)
T TIGR02853 132 PTAEGAIMMAIEHTDFTIHGSNVMVLGFGRT-GMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEI 210 (287)
T ss_pred hHHHHHHHHHHHhcCCCCCCCEEEEEcChHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccC
Confidence 45555 5566677889999999999999985 99999999999999999987632 345678999
Q ss_pred cEEEEecCCCCcCCCC---ccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhc---eecc-CCCCccHHHHHH
Q 022295 212 DIVIAAAGQAMMIKGS---WIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAG---CVTP-VPGGVGPMTVAM 284 (299)
Q Consensus 212 DIVIsa~g~p~~i~~~---~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~---~iTP-VPGGVGp~T~a~ 284 (299)
|+||++++.+ +++.+ .+++++++||++++| |.+|| +.+++.+ .+.| .||.|+|.|.+.
T Consensus 211 DiVint~P~~-ii~~~~l~~~k~~aliIDlas~P-------------g~tdf-~~Ak~~G~~a~~~~glPg~~ap~ta~~ 275 (287)
T TIGR02853 211 DIVINTIPAL-VLTADVLSKLPKHAVIIDLASKP-------------GGTDF-EYAKKRGIKALLAPGLPGIVAPKTAGK 275 (287)
T ss_pred CEEEECCChH-HhCHHHHhcCCCCeEEEEeCcCC-------------CCCCH-HHHHHCCCEEEEeCCCCcccCchhHHH
Confidence 9999998654 44543 468999999999976 34578 4455544 3335 899999999999
Q ss_pred HHHHHHHH
Q 022295 285 LLRNTLDG 292 (299)
Q Consensus 285 L~~n~v~a 292 (299)
++.|++..
T Consensus 276 i~~~~~~~ 283 (287)
T TIGR02853 276 ILANVLSE 283 (287)
T ss_pred HHHHHHHH
Confidence 99998864
No 55
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=99.19 E-value=2e-11 Score=102.09 Aligned_cols=88 Identities=34% Similarity=0.400 Sum_probs=70.1
Q ss_pred HHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCe-EEEEcCCC--------------------CChhhhccCCcEEE
Q 022295 157 LLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADAT-VTIVHSHT--------------------TDPESIVREADIVI 215 (299)
Q Consensus 157 ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gat-Vtv~~~~t--------------------~~l~~~~~~ADIVI 215 (299)
+.++...+++|++++|||+|++ |+.++..|..+|++ |++++|+. .++.+.+.++|+||
T Consensus 2 la~~~~~~l~~~~vlviGaGg~-ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI 80 (135)
T PF01488_consen 2 LAKKKFGDLKGKRVLVIGAGGA-ARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVI 80 (135)
T ss_dssp HHCTHHSTGTTSEEEEESSSHH-HHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEE
T ss_pred hhHHhcCCcCCCEEEEECCHHH-HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEE
Confidence 4445555899999999999997 99999999999986 99999862 23446788999999
Q ss_pred EecCCCCc-CCCCccCCC----eEEEEeeccCCCC
Q 022295 216 AAAGQAMM-IKGSWIKPG----AAVIDVGTNAVDD 245 (299)
Q Consensus 216 sa~g~p~~-i~~~~vk~g----avVIDvg~~~~~~ 245 (299)
++|+.+.. ++.+++++. .+|+|+++++.-+
T Consensus 81 ~aT~~~~~~i~~~~~~~~~~~~~~v~Dla~Pr~i~ 115 (135)
T PF01488_consen 81 NATPSGMPIITEEMLKKASKKLRLVIDLAVPRDID 115 (135)
T ss_dssp E-SSTTSTSSTHHHHTTTCHHCSEEEES-SS-SB-
T ss_pred EecCCCCcccCHHHHHHHHhhhhceeccccCCCCC
Confidence 99998864 899999887 5999999876533
No 56
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=99.18 E-value=4.6e-10 Score=94.46 Aligned_cols=127 Identities=24% Similarity=0.426 Sum_probs=97.2
Q ss_pred HHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCC-CeEEEEcCCCC-------------------ChhhhccC
Q 022295 151 PKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSHTT-------------------DPESIVRE 210 (299)
Q Consensus 151 ~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~t~-------------------~l~~~~~~ 210 (299)
..|+.+.+++.++++++++++|+|.|++ |+.++..|.+.| ..|++++++.. +..+.+.+
T Consensus 3 ~~g~~~a~~~~~~~~~~~~i~iiG~G~~-g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (155)
T cd01065 3 GLGFVRALEEAGIELKGKKVLILGAGGA-ARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAE 81 (155)
T ss_pred HHHHHHHHHhhCCCCCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhcccc
Confidence 5799999999999999999999999775 999999999886 68999976521 23344788
Q ss_pred CcEEEEecCCCCc------CCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHH
Q 022295 211 ADIVIAAAGQAMM------IKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAM 284 (299)
Q Consensus 211 ADIVIsa~g~p~~------i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~ 284 (299)
+|+||++++.+.. +....++++.+|+|+++.+..+ .+.+..+..+. +=++| -.|
T Consensus 82 ~Dvvi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~~-------------~l~~~~~~~g~-~~v~g------~~~ 141 (155)
T cd01065 82 ADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLET-------------PLLKEARALGA-KTIDG------LEM 141 (155)
T ss_pred CCEEEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCCC-------------HHHHHHHHCCC-ceeCC------HHH
Confidence 9999999986432 3334578999999999875322 24455555554 33555 459
Q ss_pred HHHHHHHHHHHHhc
Q 022295 285 LLRNTLDGAKRVIE 298 (299)
Q Consensus 285 L~~n~v~a~~~~~~ 298 (299)
|+.|.+++++.|++
T Consensus 142 ~~~q~~~~~~~~~~ 155 (155)
T cd01065 142 LVYQAAEAFELWTG 155 (155)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999975
No 57
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=99.16 E-value=1.1e-10 Score=90.33 Aligned_cols=78 Identities=33% Similarity=0.531 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHhhC----CCcCCcEEEEEcCCccchHHHHHHHhhC-CCeEEEEcCCCCChhhhccCCcEEEEecCCCCc
Q 022295 149 CTPKGCLELLKRSG----VTIKGKRAVVVGRSNIVGLPVSLLLLKA-DATVTIVHSHTTDPESIVREADIVIAAAGQAMM 223 (299)
Q Consensus 149 cT~~av~~ll~~~~----~~l~gk~vvViG~s~~vG~pla~lL~~~-gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~ 223 (299)
||+.++++.|++.. .++++|+++|+|+|. +|++++.+|.+. +.+|+++++ |++|+++|.+++
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~-~g~~~a~~l~~~~~~~v~v~~r------------di~i~~~~~~~~ 67 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGE-VGKGIAKLLADEGGKKVVLCDR------------DILVTATPAGVP 67 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCEEEEEcC------------CEEEEcCCCCCC
Confidence 78999999888764 459999999999977 599999999998 578999976 999999999999
Q ss_pred CCC---CccCCCeEEEEee
Q 022295 224 IKG---SWIKPGAAVIDVG 239 (299)
Q Consensus 224 i~~---~~vk~gavVIDvg 239 (299)
+.+ .+++++.+|+|+.
T Consensus 68 ~~~~~~~~~~~~~~v~~~a 86 (86)
T cd05191 68 VLEEATAKINEGAVVIDLA 86 (86)
T ss_pred chHHHHHhcCCCCEEEecC
Confidence 877 7789999999963
No 58
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.13 E-value=1.1e-10 Score=116.01 Aligned_cols=117 Identities=24% Similarity=0.301 Sum_probs=90.4
Q ss_pred HHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------CCChhhhccCCcEEEEecCCCC
Q 022295 156 ELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------TTDPESIVREADIVIAAAGQAM 222 (299)
Q Consensus 156 ~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------t~~l~~~~~~ADIVIsa~g~p~ 222 (299)
.+++..+..+.||+|+|+|.|. +|+++|+.|...|++|++|++. ..++.+.++.||+||+++|.++
T Consensus 243 ~~~R~~~~~LaGKtVgVIG~G~-IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~atGt~~ 321 (476)
T PTZ00075 243 GIFRATDVMIAGKTVVVCGYGD-VGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTATGNKD 321 (476)
T ss_pred HHHHhcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECCCccc
Confidence 3445568899999999999998 5999999999999999999754 2356788999999999999999
Q ss_pred cCCCCcc---CCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhceeccCCCC
Q 022295 223 MIKGSWI---KPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGG 276 (299)
Q Consensus 223 ~i~~~~v---k~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGG 276 (299)
+|+.+++ |+|++++++|....+... .+-+..+|+|+.++.+.+..+| .|.|
T Consensus 322 iI~~e~~~~MKpGAiLINvGr~d~Ei~i--~aL~~~~~vdv~evep~v~~~~-~~~g 375 (476)
T PTZ00075 322 IITLEHMRRMKNNAIVGNIGHFDNEIQV--AELEAYPGIEIVEIKPQVDRYT-FPDG 375 (476)
T ss_pred ccCHHHHhccCCCcEEEEcCCCchHHhH--HHHHhcCCceeecccCCCCeEE-eCCC
Confidence 9998777 999999999987421100 0012446788777777766665 5543
No 59
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.10 E-value=1.8e-10 Score=99.43 Aligned_cols=90 Identities=27% Similarity=0.446 Sum_probs=65.8
Q ss_pred HHHHHHH-HhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------CCChhhhccCCcEEEEe
Q 022295 152 KGCLELL-KRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------TTDPESIVREADIVIAA 217 (299)
Q Consensus 152 ~av~~ll-~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------t~~l~~~~~~ADIVIsa 217 (299)
+++++-+ +..+..+.||+++|+|.|.+ |+.+|+.|...||.|+|+... +..+.+.+++||++|++
T Consensus 7 ~S~~d~i~r~t~~~l~Gk~vvV~GYG~v-G~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vta 85 (162)
T PF00670_consen 7 QSLVDGIMRATNLMLAGKRVVVIGYGKV-GKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTA 85 (162)
T ss_dssp HHHHHHHHHHH-S--TTSEEEEE--SHH-HHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-
T ss_pred hhHHHHHHhcCceeeCCCEEEEeCCCcc-cHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEEC
Confidence 4444444 45689999999999999995 999999999999999999765 24577899999999999
Q ss_pred cCCCCcCCCCc---cCCCeEEEEeeccC
Q 022295 218 AGQAMMIKGSW---IKPGAAVIDVGTNA 242 (299)
Q Consensus 218 ~g~p~~i~~~~---vk~gavVIDvg~~~ 242 (299)
||..+.++.++ +|+|+++.++|...
T Consensus 86 TG~~~vi~~e~~~~mkdgail~n~Gh~d 113 (162)
T PF00670_consen 86 TGNKDVITGEHFRQMKDGAILANAGHFD 113 (162)
T ss_dssp SSSSSSB-HHHHHHS-TTEEEEESSSST
T ss_pred CCCccccCHHHHHHhcCCeEEeccCcCc
Confidence 99999998776 48999999999754
No 60
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=99.00 E-value=8.2e-10 Score=108.04 Aligned_cols=121 Identities=21% Similarity=0.276 Sum_probs=98.7
Q ss_pred HHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCC-C
Q 022295 114 EKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKAD-A 192 (299)
Q Consensus 114 ~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~g-a 192 (299)
.-..++|+-.|-|-.-|..|.|.+- -+.+++++.++...+|++|+++|||+|++ |..+|..|.++| .
T Consensus 136 ~lFqkAi~~gKrvRseT~I~~~~VS-----------i~saAv~lA~~~~~~L~~~~vlvIGAGem-~~lva~~L~~~g~~ 203 (414)
T COG0373 136 RLFQKAISVGKRVRSETGIGKGAVS-----------ISSAAVELAKRIFGSLKDKKVLVIGAGEM-GELVAKHLAEKGVK 203 (414)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccc-----------hHHHHHHHHHHHhcccccCeEEEEcccHH-HHHHHHHHHhCCCC
Confidence 3455677777777666666655443 26899999999999999999999999997 999999999999 5
Q ss_pred eEEEEcCCC-----------------CChhhhccCCcEEEEecCCCCc-CCCCccCCC------eEEEEeeccCCCCC
Q 022295 193 TVTIVHSHT-----------------TDPESIVREADIVIAAAGQAMM-IKGSWIKPG------AAVIDVGTNAVDDS 246 (299)
Q Consensus 193 tVtv~~~~t-----------------~~l~~~~~~ADIVIsa~g~p~~-i~~~~vk~g------avVIDvg~~~~~~~ 246 (299)
.|+|+||+- .++.+++.+||+|||+||.|++ |+.+++... .++||++.+|+-++
T Consensus 204 ~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRdie~ 281 (414)
T COG0373 204 KITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRDVEP 281 (414)
T ss_pred EEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCCCCc
Confidence 899999872 4677899999999999999997 688887443 58999999987554
No 61
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=98.91 E-value=4.8e-09 Score=103.26 Aligned_cols=96 Identities=17% Similarity=0.260 Sum_probs=80.8
Q ss_pred CHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC------------------CChhhhccC
Q 022295 150 TPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT------------------TDPESIVRE 210 (299)
Q Consensus 150 T~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t------------------~~l~~~~~~ 210 (299)
.+.+.+++.++.-.++.||+|+|||+|++ |+.++..|..+|+ .+++++|+. .++.+.+.+
T Consensus 164 v~~~Av~la~~~~~~l~~kkvlviGaG~~-a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~ 242 (414)
T PRK13940 164 VAFSAITLAKRQLDNISSKNVLIIGAGQT-GELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKK 242 (414)
T ss_pred HHHHHHHHHHHHhcCccCCEEEEEcCcHH-HHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhcc
Confidence 35678899988877899999999999997 9999999999995 799999762 124567899
Q ss_pred CcEEEEecCCCCc-CCCCccCC-CeEEEEeeccCCCCC
Q 022295 211 ADIVIAAAGQAMM-IKGSWIKP-GAAVIDVGTNAVDDS 246 (299)
Q Consensus 211 ADIVIsa~g~p~~-i~~~~vk~-gavVIDvg~~~~~~~ 246 (299)
||+||+||++|++ |+.++++. ..++||++.++.-++
T Consensus 243 aDiVI~aT~a~~~vi~~~~~~~~~~~~iDLavPRdidp 280 (414)
T PRK13940 243 ADIIIAAVNVLEYIVTCKYVGDKPRVFIDISIPQALDP 280 (414)
T ss_pred CCEEEECcCCCCeeECHHHhCCCCeEEEEeCCCCCCCc
Confidence 9999999999997 68888753 478999999987664
No 62
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=98.90 E-value=4.2e-09 Score=95.70 Aligned_cols=94 Identities=28% Similarity=0.404 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCe---EEEEcCC----CC-------------------
Q 022295 149 CTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADAT---VTIVHSH----TT------------------- 202 (299)
Q Consensus 149 cT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gat---Vtv~~~~----t~------------------- 202 (299)
.+-.|++..++..+.++++++++|+|+|++ |+.++.+|...|++ +++++|+ ..
T Consensus 7 v~lAG~~~al~~~g~~l~~~rvlvlGAGgA-g~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~ 85 (226)
T cd05311 7 VTLAGLLNALKLVGKKIEEVKIVINGAGAA-GIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPE 85 (226)
T ss_pred HHHHHHHHHHHHhCCCccCCEEEEECchHH-HHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccC
Confidence 456789999999999999999999999997 99999999999975 9999987 11
Q ss_pred ----ChhhhccCCcEEEEecCCCCcCCCCccC---CCeEEEEeeccCCCC
Q 022295 203 ----DPESIVREADIVIAAAGQAMMIKGSWIK---PGAAVIDVGTNAVDD 245 (299)
Q Consensus 203 ----~l~~~~~~ADIVIsa~g~p~~i~~~~vk---~gavVIDvg~~~~~~ 245 (299)
++.+.++++|+||++++ ++++++++++ ++.+|+|+. ||.++
T Consensus 86 ~~~~~l~~~l~~~dvlIgaT~-~G~~~~~~l~~m~~~~ivf~ls-nP~~e 133 (226)
T cd05311 86 KTGGTLKEALKGADVFIGVSR-PGVVKKEMIKKMAKDPIVFALA-NPVPE 133 (226)
T ss_pred cccCCHHHHHhcCCEEEeCCC-CCCCCHHHHHhhCCCCEEEEeC-CCCCc
Confidence 23356677999999999 8889888887 899999988 87654
No 63
>PRK14982 acyl-ACP reductase; Provisional
Probab=98.78 E-value=3.8e-08 Score=94.51 Aligned_cols=94 Identities=24% Similarity=0.231 Sum_probs=76.3
Q ss_pred HHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhC-C-CeEEEEcCCCC---------------ChhhhccCCcEEE
Q 022295 153 GCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKA-D-ATVTIVHSHTT---------------DPESIVREADIVI 215 (299)
Q Consensus 153 av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~-g-atVtv~~~~t~---------------~l~~~~~~ADIVI 215 (299)
++..-.+..+.+++||+|+|+|++|.+|+.+++.|..+ | ..+++++++.. ++.+.+.++|+||
T Consensus 141 ~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv 220 (340)
T PRK14982 141 QVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVV 220 (340)
T ss_pred HHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEE
Confidence 45555556778999999999999888899999999864 5 48999987521 2336788999999
Q ss_pred EecCCCCc--CCCCccCCCeEEEEeeccCCCCC
Q 022295 216 AAAGQAMM--IKGSWIKPGAAVIDVGTNAVDDS 246 (299)
Q Consensus 216 sa~g~p~~--i~~~~vk~gavVIDvg~~~~~~~ 246 (299)
++++.|+. +++++++++.++||++.++.-++
T Consensus 221 ~~ts~~~~~~I~~~~l~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 221 WVASMPKGVEIDPETLKKPCLMIDGGYPKNLDT 253 (340)
T ss_pred ECCcCCcCCcCCHHHhCCCeEEEEecCCCCCCc
Confidence 99998764 79999999999999999987543
No 64
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=98.78 E-value=7e-08 Score=84.90 Aligned_cols=92 Identities=29% Similarity=0.343 Sum_probs=69.7
Q ss_pred HHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC--------------------------Chhhh
Q 022295 154 CLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT--------------------------DPESI 207 (299)
Q Consensus 154 v~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~--------------------------~l~~~ 207 (299)
+.+.|++++.++++++++|+|.++.+|+.++..|.+.|+.|+++.++.. ++.+.
T Consensus 15 ~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 94 (194)
T cd01078 15 AGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAA 94 (194)
T ss_pred HHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHH
Confidence 3444555678999999999997556799999999999999999876521 12356
Q ss_pred ccCCcEEEEecCCCC--cCCCC-ccCCCeEEEEeeccCCCC
Q 022295 208 VREADIVIAAAGQAM--MIKGS-WIKPGAAVIDVGTNAVDD 245 (299)
Q Consensus 208 ~~~ADIVIsa~g~p~--~i~~~-~vk~gavVIDvg~~~~~~ 245 (299)
++++|+||++++.+. ....+ ..+++.+|+|+.+++..+
T Consensus 95 ~~~~diVi~at~~g~~~~~~~~~~~~~~~vv~D~~~~~~~~ 135 (194)
T cd01078 95 IKGADVVFAAGAAGVELLEKLAWAPKPLAVAADVNAVPPVG 135 (194)
T ss_pred HhcCCEEEECCCCCceechhhhcccCceeEEEEccCCCCCC
Confidence 788999999998766 33333 445689999999998644
No 65
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.70 E-value=3.4e-08 Score=97.46 Aligned_cols=94 Identities=27% Similarity=0.338 Sum_probs=79.5
Q ss_pred cCCHHHHHHHHHhh-CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccCCcE
Q 022295 148 PCTPKGCLELLKRS-GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVREADI 213 (299)
Q Consensus 148 PcT~~av~~ll~~~-~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~ADI 213 (299)
-+|..+++.-+++. ++.+.|++|+|+|.|.+ |+.++..|...|++|+++++.. .++.+.++.||+
T Consensus 192 ~gt~~s~~~ai~rat~~~l~Gk~VlViG~G~I-G~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDV 270 (425)
T PRK05476 192 YGTGESLLDGIKRATNVLIAGKVVVVAGYGDV-GKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDI 270 (425)
T ss_pred HHHHhhhHHHHHHhccCCCCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCE
Confidence 35788888877766 88899999999999885 9999999999999999997542 246677889999
Q ss_pred EEEecCCCCcCCCCc---cCCCeEEEEeeccC
Q 022295 214 VIAAAGQAMMIKGSW---IKPGAAVIDVGTNA 242 (299)
Q Consensus 214 VIsa~g~p~~i~~~~---vk~gavVIDvg~~~ 242 (299)
||+++|.++.++.++ +|+|++++++|...
T Consensus 271 VI~aTG~~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 271 FVTATGNKDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred EEECCCCHHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 999999999887544 59999999999754
No 66
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=98.65 E-value=9.3e-08 Score=91.70 Aligned_cols=94 Identities=15% Similarity=0.119 Sum_probs=73.4
Q ss_pred HHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC-----CChh----hhccCCcEEEEe---
Q 022295 151 PKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT-----TDPE----SIVREADIVIAA--- 217 (299)
Q Consensus 151 ~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t-----~~l~----~~~~~ADIVIsa--- 217 (299)
+.++.++++.. -+++||+|+|||+|++ |+.++..|.++|+ .|++|+|+. .++. ++..++||||++
T Consensus 159 ~s~av~~~~~~-~~l~~k~vLvIGaGem-~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~ 236 (338)
T PRK00676 159 ESVVQQELRRR-QKSKKASLLFIGYSEI-NRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSE 236 (338)
T ss_pred HHHHHHHHHHh-CCccCCEEEEEcccHH-HHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCc
Confidence 45567777665 5799999999999997 9999999999995 699999872 1222 456799999997
Q ss_pred cCCCCc-CCCCccCC--CeEEEEeeccCCCCC
Q 022295 218 AGQAMM-IKGSWIKP--GAAVIDVGTNAVDDS 246 (299)
Q Consensus 218 ~g~p~~-i~~~~vk~--gavVIDvg~~~~~~~ 246 (299)
|++|+. ++.+++++ ..++||++.++.-++
T Consensus 237 Tas~~p~i~~~~~~~~~~r~~iDLAvPRdId~ 268 (338)
T PRK00676 237 SAYAFPHLSWESLADIPDRIVFDFNVPRTFPW 268 (338)
T ss_pred CCCCCceeeHHHHhhccCcEEEEecCCCCCcc
Confidence 678886 57667643 248999999987553
No 67
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.56 E-value=1.9e-07 Score=91.67 Aligned_cols=93 Identities=26% Similarity=0.349 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHh-hCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccCCcEE
Q 022295 149 CTPKGCLELLKR-SGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVREADIV 214 (299)
Q Consensus 149 cT~~av~~ll~~-~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~ADIV 214 (299)
+|..++++-+.+ .++.+.||+|+|+|.|.+ |+.+++.|...|+.|+++++.. .++.+.++.+|+|
T Consensus 176 g~g~s~~~~i~r~t~~~l~Gk~VvViG~G~I-G~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVV 254 (406)
T TIGR00936 176 GTGQSTIDGILRATNLLIAGKTVVVAGYGWC-GKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIF 254 (406)
T ss_pred ccchhHHHHHHHhcCCCCCcCEEEEECCCHH-HHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEE
Confidence 455666665544 588899999999999995 9999999999999999996442 2356778899999
Q ss_pred EEecCCCCcCCC---CccCCCeEEEEeeccC
Q 022295 215 IAAAGQAMMIKG---SWIKPGAAVIDVGTNA 242 (299)
Q Consensus 215 Isa~g~p~~i~~---~~vk~gavVIDvg~~~ 242 (299)
|+++|.+++++. ..+|+|++++.+|...
T Consensus 255 ItaTG~~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 255 ITATGNKDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred EECCCCHHHHHHHHHhcCCCCcEEEEECCCC
Confidence 999999998876 4569999999999754
No 68
>PLN00203 glutamyl-tRNA reductase
Probab=98.52 E-value=2.6e-07 Score=93.43 Aligned_cols=96 Identities=14% Similarity=0.195 Sum_probs=76.5
Q ss_pred CHHHHHHHHHhhCC--CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC--------------------CChhh
Q 022295 150 TPKGCLELLKRSGV--TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT--------------------TDPES 206 (299)
Q Consensus 150 T~~av~~ll~~~~~--~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t--------------------~~l~~ 206 (299)
.+.+.+++.+..-- ++.+++|+|||+|++ |+.++..|...|+ .|++++++. .++.+
T Consensus 247 v~s~Av~la~~~~~~~~l~~kkVlVIGAG~m-G~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~ 325 (519)
T PLN00203 247 VSSAAVELALMKLPESSHASARVLVIGAGKM-GKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLA 325 (519)
T ss_pred HHHHHHHHHHHhcCCCCCCCCEEEEEeCHHH-HHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHH
Confidence 35677788876643 499999999999886 9999999999997 699998751 13446
Q ss_pred hccCCcEEEEecCCCCc-CCCCccCC----------CeEEEEeeccCCCCC
Q 022295 207 IVREADIVIAAAGQAMM-IKGSWIKP----------GAAVIDVGTNAVDDS 246 (299)
Q Consensus 207 ~~~~ADIVIsa~g~p~~-i~~~~vk~----------gavVIDvg~~~~~~~ 246 (299)
.+.+||+||++|++++. ++++|+++ ..++||++.++.-++
T Consensus 326 al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp 376 (519)
T PLN00203 326 CAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGA 376 (519)
T ss_pred HHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCcc
Confidence 78899999999998875 78888743 259999999986554
No 69
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.50 E-value=6.3e-07 Score=87.08 Aligned_cols=123 Identities=26% Similarity=0.350 Sum_probs=85.2
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC---------------------CChhhhccCCcEEEEecC---C
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT---------------------TDPESIVREADIVIAAAG---Q 220 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t---------------------~~l~~~~~~ADIVIsa~g---~ 220 (299)
+.+++|+|+|+|.+ |+.++..|...|+.|++++++. .++.+++++||+||++++ .
T Consensus 165 l~~~~VlViGaG~v-G~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 165 VEPGDVTIIGGGVV-GTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCCceEEEEcCCHH-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 57789999999875 9999999999999999997641 134567889999999984 3
Q ss_pred --CCcCCCCcc---CCCeEEEEeeccCCCCCccCCCceeeccCCchhhhh---hhceeccCCCCccHHHHHHHHHHHHHH
Q 022295 221 --AMMIKGSWI---KPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACK---VAGCVTPVPGGVGPMTVAMLLRNTLDG 292 (299)
Q Consensus 221 --p~~i~~~~v---k~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~---~a~~iTPVPGGVGp~T~a~L~~n~v~a 292 (299)
|.+++.+++ +++.++||+++.+- ++.. ..+ .+..|++.+.. ..-.+.=.||-+ |.|.+.++.|.+..
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva~d~G--G~~e-~~~-~t~~d~p~~~~~Gv~~~~v~nlP~~~-p~~aS~~~~~~l~~ 318 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVAIDQG--GCVE-TSR-PTTHDQPTYAVHDVVHYCVANMPGAV-PKTSTYALTNATMP 318 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEecCCC--CCcc-CCc-CCCCCCCEEEECCeEEEEeCCccccc-HHHHHHHHHHHHHH
Confidence 556777665 78999999998752 1100 001 22223222211 112344578888 99999888887754
Q ss_pred H
Q 022295 293 A 293 (299)
Q Consensus 293 ~ 293 (299)
+
T Consensus 319 ~ 319 (370)
T TIGR00518 319 Y 319 (370)
T ss_pred H
Confidence 4
No 70
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.48 E-value=3.2e-07 Score=90.54 Aligned_cols=95 Identities=21% Similarity=0.308 Sum_probs=73.6
Q ss_pred HHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCCC-----------------ChhhhccCCc
Q 022295 151 PKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHTT-----------------DPESIVREAD 212 (299)
Q Consensus 151 ~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t~-----------------~l~~~~~~AD 212 (299)
+...+++.+....++.|++|+|+|+|.+ |+.++..|...|+ .|++++++.. ++.+.+..+|
T Consensus 166 ~~~Av~~a~~~~~~~~~~~vlViGaG~i-G~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aD 244 (423)
T PRK00045 166 ASAAVELAKQIFGDLSGKKVLVIGAGEM-GELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEAD 244 (423)
T ss_pred HHHHHHHHHHhhCCccCCEEEEECchHH-HHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCC
Confidence 3445566654434789999999999886 9999999999997 7999987521 2335678899
Q ss_pred EEEEecCCCCc-CCCCccCC--------CeEEEEeeccCCCCC
Q 022295 213 IVIAAAGQAMM-IKGSWIKP--------GAAVIDVGTNAVDDS 246 (299)
Q Consensus 213 IVIsa~g~p~~-i~~~~vk~--------gavVIDvg~~~~~~~ 246 (299)
+||++||.|+. ++.+|+++ +.++||++.++.-++
T Consensus 245 vVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prdid~ 287 (423)
T PRK00045 245 IVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPRDIEP 287 (423)
T ss_pred EEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCCCcc
Confidence 99999998874 78888854 479999998775443
No 71
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.47 E-value=2.9e-07 Score=90.74 Aligned_cols=94 Identities=27% Similarity=0.372 Sum_probs=74.0
Q ss_pred HHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCC-CeEEEEcCCCC-----------------ChhhhccCCc
Q 022295 151 PKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSHTT-----------------DPESIVREAD 212 (299)
Q Consensus 151 ~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~t~-----------------~l~~~~~~AD 212 (299)
+.+.+++.++...++.|++|+|+|.|.+ |+.++..|...| ..|++++++.. ++.+.+..+|
T Consensus 164 ~~~Av~la~~~~~~l~~~~VlViGaG~i-G~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aD 242 (417)
T TIGR01035 164 SSAAVELAERIFGSLKGKKALLIGAGEM-GELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEAD 242 (417)
T ss_pred HHHHHHHHHHHhCCccCCEEEEECChHH-HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCC
Confidence 4555666666655799999999999886 999999999999 68999987521 2446678999
Q ss_pred EEEEecCCCCc-CCCCccCC-------CeEEEEeeccCCCC
Q 022295 213 IVIAAAGQAMM-IKGSWIKP-------GAAVIDVGTNAVDD 245 (299)
Q Consensus 213 IVIsa~g~p~~-i~~~~vk~-------gavVIDvg~~~~~~ 245 (299)
+||++||.|+. ++++|+++ ..+++|++.++.-+
T Consensus 243 vVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid 283 (417)
T TIGR01035 243 IVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPRDVD 283 (417)
T ss_pred EEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 99999998875 78888854 35999999877544
No 72
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.45 E-value=4.2e-07 Score=87.05 Aligned_cols=86 Identities=26% Similarity=0.378 Sum_probs=73.6
Q ss_pred HHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccCCcEEEEecCC
Q 022295 154 CLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVREADIVIAAAGQ 220 (299)
Q Consensus 154 v~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~ADIVIsa~g~ 220 (299)
+=-+++..++-+.||++||.|.|. |||.+|+.|...||.|.|..... ..+.+..+.+||+||+||.
T Consensus 196 ~DgI~RaTn~liaGK~vVV~GYG~-vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~TGn 274 (420)
T COG0499 196 LDGILRATNVLLAGKNVVVAGYGW-VGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTATGN 274 (420)
T ss_pred HHHHHhhhceeecCceEEEecccc-cchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEccCC
Confidence 334445578999999999999999 59999999999999999987542 2356889999999999999
Q ss_pred CCcCCCCcc---CCCeEEEEeec
Q 022295 221 AMMIKGSWI---KPGAAVIDVGT 240 (299)
Q Consensus 221 p~~i~~~~v---k~gavVIDvg~ 240 (299)
-+.|+.+++ |+|+++.+.|.
T Consensus 275 kdVi~~eh~~~MkDgaIl~N~GH 297 (420)
T COG0499 275 KDVIRKEHFEKMKDGAILANAGH 297 (420)
T ss_pred cCccCHHHHHhccCCeEEecccc
Confidence 999998885 88999999995
No 73
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.45 E-value=5e-07 Score=88.95 Aligned_cols=95 Identities=27% Similarity=0.382 Sum_probs=76.0
Q ss_pred ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccCCcE
Q 022295 147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVREADI 213 (299)
Q Consensus 147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~ADI 213 (299)
+-|--..+-.+++..++.+.|++|+|+|.|.+ |+.+++.+...||+|+++.... .++.+.++.+|+
T Consensus 182 ~g~g~s~~~~i~r~t~~~l~GktVvViG~G~I-G~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDV 260 (413)
T cd00401 182 YGCRESLIDGIKRATDVMIAGKVAVVAGYGDV-GKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDI 260 (413)
T ss_pred chhchhhHHHHHHhcCCCCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCE
Confidence 44433345555666789999999999999985 9999999999999999986542 245577889999
Q ss_pred EEEecCCCCcCCC---CccCCCeEEEEeeccC
Q 022295 214 VIAAAGQAMMIKG---SWIKPGAAVIDVGTNA 242 (299)
Q Consensus 214 VIsa~g~p~~i~~---~~vk~gavVIDvg~~~ 242 (299)
||.++|.++.+.. +.+++|++++.+|...
T Consensus 261 VI~atG~~~~i~~~~l~~mk~GgilvnvG~~~ 292 (413)
T cd00401 261 FVTTTGNKDIITGEHFEQMKDGAIVCNIGHFD 292 (413)
T ss_pred EEECCCCHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence 9999999987754 4579999999999653
No 74
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=98.43 E-value=8.3e-07 Score=82.24 Aligned_cols=149 Identities=19% Similarity=0.282 Sum_probs=96.9
Q ss_pred CceEEEEeCCCCC-CC------CHHHHHccCCcccc----CCCCCccc--ccccccC---C-CC------CccccCCHHH
Q 022295 97 DVHGILVQLPLPK-HI------NEEKVLGEISLEKD----VDGFHPLN--IGKLAMK---G-RD------PLFLPCTPKG 153 (299)
Q Consensus 97 ~v~GIlvq~Plp~-~i------~~~~i~~~i~p~KD----VDg~~~~n--~g~l~~g---~-~~------~~~~PcT~~a 153 (299)
-+.|+++..||-+ .+ -.++++++..-.+| |-|+.-.. .|++-.+ . .+ ...-.-|+.+
T Consensus 70 vieg~l~~~pllpe~~~s~pkaatrrvl~a~~~a~~~Ga~V~gLGgFssIVgn~~~n~q~~~~e~t~~~~ttgns~Taya 149 (351)
T COG5322 70 VIEGYLVESPLLPEMLRSRPKAATRRVLNAMALAQKLGADVTGLGGFSSIVGNLGQNVQVRNVELTFTRFTTGNSHTAYA 149 (351)
T ss_pred EEEEEEEccccCHHHHhhCHHHHHHHHHHHHHHHHHcCCeEEeecchhhhhccccccccccceEEEEEecccCCccchHH
Confidence 4789999999832 21 23556666655443 33332111 2222110 0 00 0011235554
Q ss_pred ----HHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC--------------------Chh-hhc
Q 022295 154 ----CLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT--------------------DPE-SIV 208 (299)
Q Consensus 154 ----v~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~--------------------~l~-~~~ 208 (299)
+++-+++.|++++-.+|.|+|+.+.+|..+++.|..++....+.++... ++. +++
T Consensus 150 a~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~ 229 (351)
T COG5322 150 ACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALP 229 (351)
T ss_pred HHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeecccccc
Confidence 4555667899999999999999999999999999999988888875420 122 344
Q ss_pred cCCcEEEEecCCCCc-CCCCccCCCeEEEEeeccCCCC
Q 022295 209 READIVIAAAGQAMM-IKGSWIKPGAAVIDVGTNAVDD 245 (299)
Q Consensus 209 ~~ADIVIsa~g~p~~-i~~~~vk~gavVIDvg~~~~~~ 245 (299)
..+++|.+|+-.++. |.+.++|||++++|-|++..-+
T Consensus 230 ~e~i~v~vAs~~~g~~I~pq~lkpg~~ivD~g~P~dvd 267 (351)
T COG5322 230 QEDILVWVASMPKGVEIFPQHLKPGCLIVDGGYPKDVD 267 (351)
T ss_pred ccceEEEEeecCCCceechhhccCCeEEEcCCcCcccc
Confidence 444555588777764 8999999999999999986533
No 75
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=98.41 E-value=2.7e-07 Score=87.00 Aligned_cols=77 Identities=27% Similarity=0.485 Sum_probs=64.6
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC---------------------CCChhhhccCCcEEEEecC----
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH---------------------TTDPESIVREADIVIAAAG---- 219 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~---------------------t~~l~~~~~~ADIVIsa~g---- 219 (299)
....+|+||| |++||.-.|++....||+||+.+.+ ..++++.++.||+||.|+=
T Consensus 166 V~~~kv~iiG-GGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 166 VLPAKVVVLG-GGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred CCCccEEEEC-CccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 3557899999 5667999999999999999999754 2367799999999998873
Q ss_pred -CCCcCCCCcc---CCCeEEEEeeccC
Q 022295 220 -QAMMIKGSWI---KPGAAVIDVGTNA 242 (299)
Q Consensus 220 -~p~~i~~~~v---k~gavVIDvg~~~ 242 (299)
.|.+++.+|+ |||+++|||.++.
T Consensus 245 kaPkLvt~e~vk~MkpGsVivDVAiDq 271 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVDVAIDQ 271 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEEEEEcC
Confidence 4678998875 8999999999974
No 76
>PLN02494 adenosylhomocysteinase
Probab=98.38 E-value=7.8e-07 Score=88.62 Aligned_cols=91 Identities=26% Similarity=0.331 Sum_probs=74.2
Q ss_pred CCHHHHHHHHH-hhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccCCcEE
Q 022295 149 CTPKGCLELLK-RSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVREADIV 214 (299)
Q Consensus 149 cT~~av~~ll~-~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~ADIV 214 (299)
.|-+++++-+. ..++.+.||+|+|+|.|.+ |+.+|+.|...|+.|+++++.. .++.+.++.||+|
T Consensus 235 GtgqS~~d~i~r~t~i~LaGKtVvViGyG~I-Gr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVV 313 (477)
T PLN02494 235 GCRHSLPDGLMRATDVMIAGKVAVICGYGDV-GKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIF 313 (477)
T ss_pred cccccHHHHHHHhcCCccCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEE
Confidence 34555555554 4578899999999999985 9999999999999999986542 1356778999999
Q ss_pred EEecCCCCcCCC---CccCCCeEEEEeec
Q 022295 215 IAAAGQAMMIKG---SWIKPGAAVIDVGT 240 (299)
Q Consensus 215 Isa~g~p~~i~~---~~vk~gavVIDvg~ 240 (299)
|+++|.++++.. +.+|+|++++.+|.
T Consensus 314 I~tTGt~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 314 VTTTGNKDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred EECCCCccchHHHHHhcCCCCCEEEEcCC
Confidence 999999988744 45799999999998
No 77
>PLN02928 oxidoreductase family protein
Probab=98.34 E-value=5.3e-06 Score=80.03 Aligned_cols=134 Identities=24% Similarity=0.305 Sum_probs=89.4
Q ss_pred CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------------CChhhhccCCcEEEE
Q 022295 162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------------------TDPESIVREADIVIA 216 (299)
Q Consensus 162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------------------~~l~~~~~~ADIVIs 216 (299)
+.++.||++.|||.|.+ |+.+|..|...|++|+.++++. .++.+.+++||+|+.
T Consensus 154 ~~~l~gktvGIiG~G~I-G~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl 232 (347)
T PLN02928 154 GDTLFGKTVFILGYGAI-GIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVL 232 (347)
T ss_pred ccCCCCCEEEEECCCHH-HHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEE
Confidence 35799999999999996 9999999999999999987541 256788999999999
Q ss_pred ecCC----CCcCCCCc---cCCCeEEEEeeccCCCCCc-----cCCCceeec---cCCchh--------hhhhhceeccC
Q 022295 217 AAGQ----AMMIKGSW---IKPGAAVIDVGTNAVDDST-----KKSGYRLVG---DVDFHE--------ACKVAGCVTPV 273 (299)
Q Consensus 217 a~g~----p~~i~~~~---vk~gavVIDvg~~~~~~~~-----~~~g~kl~G---Dvdf~~--------~~~~a~~iTPV 273 (299)
+++. .++|+.+. +|+|+++|++|.-.+-+.. -.+| ++.| ||-..+ .....-.+||=
T Consensus 233 ~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g-~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPH 311 (347)
T PLN02928 233 CCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESG-HLGGLAIDVAWSEPFDPDDPILKHPNVIITPH 311 (347)
T ss_pred CCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC-CeeEEEEccCCCCCCCCCChhhcCCCEEECCc
Confidence 8873 34787755 4899999999975442210 0012 4433 662111 11123367887
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHh
Q 022295 274 PGGVGPMTVAMLLRNTLDGAKRVI 297 (299)
Q Consensus 274 PGGVGp~T~a~L~~n~v~a~~~~~ 297 (299)
-||.-.-+..-+...+++..++|.
T Consensus 312 ia~~t~~~~~~~~~~~~~nl~~~~ 335 (347)
T PLN02928 312 VAGVTEYSYRSMGKIVGDAALQLH 335 (347)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHH
Confidence 777655544444444444444443
No 78
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.31 E-value=1.1e-06 Score=76.80 Aligned_cols=83 Identities=23% Similarity=0.357 Sum_probs=66.1
Q ss_pred hhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccCCcEEEEecC-CC---C
Q 022295 160 RSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVREADIVIAAAG-QA---M 222 (299)
Q Consensus 160 ~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~ADIVIsa~g-~p---~ 222 (299)
..+.++.||+|.|||.|.+ |+.+|.+|..-|++|..++++. .++.+.+++||+|+...+ .| +
T Consensus 29 ~~~~~l~g~tvgIiG~G~I-G~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~ 107 (178)
T PF02826_consen 29 FPGRELRGKTVGIIGYGRI-GRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRG 107 (178)
T ss_dssp TTBS-STTSEEEEESTSHH-HHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTT
T ss_pred CCccccCCCEEEEEEEcCC-cCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccccce
Confidence 3467899999999999996 9999999999999999998763 367789999999998887 33 5
Q ss_pred cCCCCc---cCCCeEEEEeeccCC
Q 022295 223 MIKGSW---IKPGAAVIDVGTNAV 243 (299)
Q Consensus 223 ~i~~~~---vk~gavVIDvg~~~~ 243 (299)
+|+.+. +|+|+++|++|.-.+
T Consensus 108 li~~~~l~~mk~ga~lvN~aRG~~ 131 (178)
T PF02826_consen 108 LINAEFLAKMKPGAVLVNVARGEL 131 (178)
T ss_dssp SBSHHHHHTSTTTEEEEESSSGGG
T ss_pred eeeeeeeeccccceEEEeccchhh
Confidence 787766 489999999997543
No 79
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.26 E-value=2.7e-06 Score=80.65 Aligned_cols=94 Identities=20% Similarity=0.305 Sum_probs=69.2
Q ss_pred HHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCCC-----------------ChhhhccCCc
Q 022295 151 PKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHTT-----------------DPESIVREAD 212 (299)
Q Consensus 151 ~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t~-----------------~l~~~~~~AD 212 (299)
+...+++.+..--++.|++|+|+|.|.+ |+.++..|...|+ .|++++++.. ++.+.+.++|
T Consensus 162 ~~~Av~~a~~~~~~l~~~~V~ViGaG~i-G~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aD 240 (311)
T cd05213 162 SSAAVELAEKIFGNLKGKKVLVIGAGEM-GELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEAD 240 (311)
T ss_pred HHHHHHHHHHHhCCccCCEEEEECcHHH-HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCC
Confidence 4445666666545589999999999886 9999999988774 7999987521 2446678899
Q ss_pred EEEEecCCCCc---CCC---CccCCCeEEEEeeccCCCC
Q 022295 213 IVIAAAGQAMM---IKG---SWIKPGAAVIDVGTNAVDD 245 (299)
Q Consensus 213 IVIsa~g~p~~---i~~---~~vk~gavVIDvg~~~~~~ 245 (299)
+||++||.|+. +.. .+-..+.++||++.++.-+
T Consensus 241 vVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPrdi~ 279 (311)
T cd05213 241 VVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPRDIE 279 (311)
T ss_pred EEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCCCCc
Confidence 99999998876 211 1223578999999876533
No 80
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.22 E-value=9.2e-06 Score=81.98 Aligned_cols=91 Identities=21% Similarity=0.329 Sum_probs=71.2
Q ss_pred HHHHHHHHHhhCCC----------cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC---------------C--
Q 022295 151 PKGCLELLKRSGVT----------IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT---------------D-- 203 (299)
Q Consensus 151 ~~av~~ll~~~~~~----------l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~---------------~-- 203 (299)
.+|+++....++.. +.+.+|+|+|.|.+ |...+..+...|+.|+++..+.. +
T Consensus 138 y~Avi~Aa~~lgr~~~g~~taag~vp~akVlViGaG~i-Gl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~ 216 (511)
T TIGR00561 138 YRAIIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVA-GLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFK 216 (511)
T ss_pred HHHHHHHHHHhhhhcCCceecCCCCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEecccc
Confidence 46677777766542 34689999998775 99999999999999999875410 0
Q ss_pred ------------------------hhhhccCCcEEEEec---C--CCCcCCCCcc---CCCeEEEEeeccC
Q 022295 204 ------------------------PESIVREADIVIAAA---G--QAMMIKGSWI---KPGAAVIDVGTNA 242 (299)
Q Consensus 204 ------------------------l~~~~~~ADIVIsa~---g--~p~~i~~~~v---k~gavVIDvg~~~ 242 (299)
+.+.++.+||||+++ | .|.+++.+|+ |+|++++|+++.+
T Consensus 217 e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~ 287 (511)
T TIGR00561 217 EEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQ 287 (511)
T ss_pred ccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCC
Confidence 345678999999999 5 4667898885 8999999999864
No 81
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.17 E-value=3e-05 Score=75.78 Aligned_cols=142 Identities=23% Similarity=0.255 Sum_probs=93.6
Q ss_pred HHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC---------CChhhhccCCcEEEEecCC-C---
Q 022295 155 LELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT---------TDPESIVREADIVIAAAGQ-A--- 221 (299)
Q Consensus 155 ~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t---------~~l~~~~~~ADIVIsa~g~-p--- 221 (299)
+.+.++.+.++.||++.|||.|.+ |+.++..|...|++|..++... .++.+.+++||+|+..++- +
T Consensus 104 L~l~r~~g~~l~gktvGIIG~G~I-G~~va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~ 182 (381)
T PRK00257 104 LTLAEREGVDLAERTYGVVGAGHV-GGRLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGE 182 (381)
T ss_pred HHHhcccCCCcCcCEEEEECCCHH-HHHHHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCcc
Confidence 344456788999999999999985 9999999999999999987421 2577889999999988872 3
Q ss_pred ----CcCCCCc---cCCCeEEEEeeccCCCCCcc-----CCC--ceeeccCCc------hhhhhhhceeccCCCCccHHH
Q 022295 222 ----MMIKGSW---IKPGAAVIDVGTNAVDDSTK-----KSG--YRLVGDVDF------HEACKVAGCVTPVPGGVGPMT 281 (299)
Q Consensus 222 ----~~i~~~~---vk~gavVIDvg~~~~~~~~~-----~~g--~kl~GDvdf------~~~~~~a~~iTPVPGGVGp~T 281 (299)
++++.+. +|+|+++|+++.-.+-+... .+| ...+=||=. .......-.+||=-+|...=+
T Consensus 183 ~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~nvi~TPHiAg~s~e~ 262 (381)
T PRK00257 183 HPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADLCTIATPHIAGYSLDG 262 (381)
T ss_pred ccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhCCEEEcCccccCCHHH
Confidence 4676644 59999999999765533100 001 023446621 112223456888777765544
Q ss_pred HHHHHHHHHHHHHHHh
Q 022295 282 VAMLLRNTLDGAKRVI 297 (299)
Q Consensus 282 ~a~L~~n~v~a~~~~~ 297 (299)
..-....++++..+++
T Consensus 263 ~~r~~~~~~~nl~~~~ 278 (381)
T PRK00257 263 KARGTAQIYQALCRFF 278 (381)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 82
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.14 E-value=3.6e-05 Score=75.14 Aligned_cols=89 Identities=24% Similarity=0.340 Sum_probs=70.8
Q ss_pred HHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC---------CCChhhhccCCcEEEEecC-CC--
Q 022295 154 CLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH---------TTDPESIVREADIVIAAAG-QA-- 221 (299)
Q Consensus 154 v~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~---------t~~l~~~~~~ADIVIsa~g-~p-- 221 (299)
++.+.++.+.++.||++.|||.|.+ |+.+|..|...|++|..++.. ..++.+.+++||||+..++ .+
T Consensus 103 lL~l~r~~g~~L~gktvGIIG~G~I-G~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g 181 (378)
T PRK15438 103 LLMLAERDGFSLHDRTVGIVGVGNV-GRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDG 181 (378)
T ss_pred HHHHhccCCCCcCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCc
Confidence 3444456788999999999999986 999999999999999999742 1257889999999997766 12
Q ss_pred -----CcCCCCc---cCCCeEEEEeeccCC
Q 022295 222 -----MMIKGSW---IKPGAAVIDVGTNAV 243 (299)
Q Consensus 222 -----~~i~~~~---vk~gavVIDvg~~~~ 243 (299)
++++.+. +|+|+++|++|.-.+
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~v 211 (378)
T PRK15438 182 PYKTLHLADEKLIRSLKPGAILINACRGAV 211 (378)
T ss_pred ccccccccCHHHHhcCCCCcEEEECCCchh
Confidence 3566544 589999999997654
No 83
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.11 E-value=9.1e-06 Score=72.49 Aligned_cols=95 Identities=23% Similarity=0.290 Sum_probs=68.1
Q ss_pred cCCHHHHHHHHHhh------CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCCh--------------hhh
Q 022295 148 PCTPKGCLELLKRS------GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDP--------------ESI 207 (299)
Q Consensus 148 PcT~~av~~ll~~~------~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l--------------~~~ 207 (299)
|.|++|+...+++. +.+++||+++|+|.|+ +|+.+++.|.+.|++|++++++...+ .+.
T Consensus 3 ~aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~-vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l 81 (200)
T cd01075 3 PPTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGK-VGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEI 81 (200)
T ss_pred ChhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhh
Confidence 67888886665543 7899999999999987 59999999999999999987653211 122
Q ss_pred c-cCCcEEEEecCCCCcCCCCccCC--CeEEEEeeccCCC
Q 022295 208 V-READIVIAAAGQAMMIKGSWIKP--GAAVIDVGTNAVD 244 (299)
Q Consensus 208 ~-~~ADIVIsa~g~p~~i~~~~vk~--gavVIDvg~~~~~ 244 (299)
. .++|+++.++.. +.++.+.++. ..+|++-+-++..
T Consensus 82 ~~~~~Dv~vp~A~~-~~I~~~~~~~l~~~~v~~~AN~~~~ 120 (200)
T cd01075 82 YSVDADVFAPCALG-GVINDDTIPQLKAKAIAGAANNQLA 120 (200)
T ss_pred ccccCCEEEecccc-cccCHHHHHHcCCCEEEECCcCccC
Confidence 2 379999955442 3566555432 4577887766553
No 84
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=98.05 E-value=2.2e-05 Score=74.99 Aligned_cols=75 Identities=20% Similarity=0.388 Sum_probs=62.3
Q ss_pred CCcEEEEEcCCccchHHHHHHHh-hCC-CeEEEEcCCC---------------------CChhhhccCCcEEEEecCCCC
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLL-KAD-ATVTIVHSHT---------------------TDPESIVREADIVIAAAGQAM 222 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~-~~g-atVtv~~~~t---------------------~~l~~~~~~ADIVIsa~g~p~ 222 (299)
..++++|||.|+. |+..+..|. .++ .+|++++++. .++++.+++|||||++|+.+.
T Consensus 128 ~~~~v~iiGaG~q-A~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~ 206 (326)
T TIGR02992 128 DSSVVAIFGAGMQ-ARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET 206 (326)
T ss_pred CCcEEEEECCCHH-HHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC
Confidence 5689999999997 999998886 466 4799998751 345677899999999999765
Q ss_pred -cCCCCccCCCeEEEEeecc
Q 022295 223 -MIKGSWIKPGAAVIDVGTN 241 (299)
Q Consensus 223 -~i~~~~vk~gavVIDvg~~ 241 (299)
+++.+|+++|+.|..+|.+
T Consensus 207 p~i~~~~l~~g~~i~~vg~~ 226 (326)
T TIGR02992 207 PILHAEWLEPGQHVTAMGSD 226 (326)
T ss_pred cEecHHHcCCCcEEEeeCCC
Confidence 5799999999999999965
No 85
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.03 E-value=1.2e-05 Score=77.06 Aligned_cols=81 Identities=22% Similarity=0.292 Sum_probs=66.6
Q ss_pred CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC------------CChhhhccCCcEEEEecCC-C---CcCC
Q 022295 162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT------------TDPESIVREADIVIAAAGQ-A---MMIK 225 (299)
Q Consensus 162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t------------~~l~~~~~~ADIVIsa~g~-p---~~i~ 225 (299)
+.+|.||++.|||.|.+ |+.+|..|...|++|..+++.. .++.+.+++||+|+.+++. + +++.
T Consensus 145 g~~L~gktvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~ 223 (333)
T PRK13243 145 GYDVYGKTIGIIGFGRI-GQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMIN 223 (333)
T ss_pred ccCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccC
Confidence 35789999999999886 9999999999999999887542 2567889999999999884 2 3676
Q ss_pred C---CccCCCeEEEEeeccCC
Q 022295 226 G---SWIKPGAAVIDVGTNAV 243 (299)
Q Consensus 226 ~---~~vk~gavVIDvg~~~~ 243 (299)
. +.+|+|+++||++.-..
T Consensus 224 ~~~~~~mk~ga~lIN~aRg~~ 244 (333)
T PRK13243 224 EERLKLMKPTAILVNTARGKV 244 (333)
T ss_pred HHHHhcCCCCeEEEECcCchh
Confidence 5 44689999999997654
No 86
>PRK06436 glycerate dehydrogenase; Provisional
Probab=97.97 E-value=1.9e-05 Score=74.92 Aligned_cols=80 Identities=24% Similarity=0.342 Sum_probs=66.1
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC---------CCChhhhccCCcEEEEecCC-C---CcCCCC--
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH---------TTDPESIVREADIVIAAAGQ-A---MMIKGS-- 227 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~---------t~~l~~~~~~ADIVIsa~g~-p---~~i~~~-- 227 (299)
..|.||++.|||.|.+ |+++|.+|...|++|..++++ ..++.+.+++||+|+...+. | +++..+
T Consensus 118 ~~L~gktvgIiG~G~I-G~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l 196 (303)
T PRK06436 118 KLLYNKSLGILGYGGI-GRRVALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKML 196 (303)
T ss_pred CCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCCcccCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHH
Confidence 4789999999999986 999999999889999998864 13678889999999998883 2 366653
Q ss_pred -ccCCCeEEEEeeccCC
Q 022295 228 -WIKPGAAVIDVGTNAV 243 (299)
Q Consensus 228 -~vk~gavVIDvg~~~~ 243 (299)
.+|+|+++|++|.-..
T Consensus 197 ~~mk~ga~lIN~sRG~~ 213 (303)
T PRK06436 197 SLFRKGLAIINVARADV 213 (303)
T ss_pred hcCCCCeEEEECCCccc
Confidence 4689999999998654
No 87
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.96 E-value=1.6e-05 Score=75.67 Aligned_cols=80 Identities=24% Similarity=0.345 Sum_probs=65.9
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------CChhhhccCCcEEEEecC-CC---CcCCCCc--
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------TDPESIVREADIVIAAAG-QA---MMIKGSW-- 228 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------~~l~~~~~~ADIVIsa~g-~p---~~i~~~~-- 228 (299)
.++.||++.|||.|.+ |+.+|.+|..-|++|...++.. .++.+.+++||+|+...+ .| ++|+.+.
T Consensus 143 ~~l~gktvgIiG~G~I-G~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~ 221 (314)
T PRK06932 143 TDVRGSTLGVFGKGCL-GTEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLA 221 (314)
T ss_pred cccCCCEEEEECCCHH-HHHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHH
Confidence 4689999999999996 9999999999999998776431 257899999999998887 33 4787755
Q ss_pred -cCCCeEEEEeeccCC
Q 022295 229 -IKPGAAVIDVGTNAV 243 (299)
Q Consensus 229 -vk~gavVIDvg~~~~ 243 (299)
+|||+++|++|.-.+
T Consensus 222 ~mk~ga~lIN~aRG~~ 237 (314)
T PRK06932 222 LMKPTAFLINTGRGPL 237 (314)
T ss_pred hCCCCeEEEECCCccc
Confidence 599999999997654
No 88
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=97.94 E-value=1.9e-05 Score=74.54 Aligned_cols=98 Identities=28% Similarity=0.341 Sum_probs=77.0
Q ss_pred CccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccC
Q 022295 144 PLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVRE 210 (299)
Q Consensus 144 ~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~ 210 (299)
+.++-|--.-+--+-+...+-+.||.+||.|.|. |||..|..|...|+.|+|..... ..+.+.+++
T Consensus 191 DnLygcreSl~DgikraTDvM~aGKv~Vv~GYGd-VGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e 269 (434)
T KOG1370|consen 191 DNLYGCRESLLDGIKRATDVMIAGKVAVVCGYGD-VGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIRE 269 (434)
T ss_pred cccccchhhhhhhhhhhhhheecccEEEEeccCc-cchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhc
Confidence 3455554222222233456778999999999999 59999999999999999987542 246799999
Q ss_pred CcEEEEecCCCCcCCCCcc---CCCeEEEEeeccC
Q 022295 211 ADIVIAAAGQAMMIKGSWI---KPGAAVIDVGTNA 242 (299)
Q Consensus 211 ADIVIsa~g~p~~i~~~~v---k~gavVIDvg~~~ 242 (299)
+||+||+||.-+.|..+++ |.+++|.++|+.-
T Consensus 270 ~difVTtTGc~dii~~~H~~~mk~d~IvCN~Ghfd 304 (434)
T KOG1370|consen 270 VDIFVTTTGCKDIITGEHFDQMKNDAIVCNIGHFD 304 (434)
T ss_pred CCEEEEccCCcchhhHHHHHhCcCCcEEecccccc
Confidence 9999999999999988775 7799999999753
No 89
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.93 E-value=2.1e-05 Score=74.97 Aligned_cols=80 Identities=20% Similarity=0.271 Sum_probs=66.4
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------CChhhhccCCcEEEEecCC----CCcCCCCc---
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------TDPESIVREADIVIAAAGQ----AMMIKGSW--- 228 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------~~l~~~~~~ADIVIsa~g~----p~~i~~~~--- 228 (299)
.++.||++.|||.|.+ |+.+|.+|..-|+.|...++.. .++.+.+++||+|+...+. -++|+.+.
T Consensus 144 ~~l~gktvgIiG~G~I-G~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~ 222 (317)
T PRK06487 144 VELEGKTLGLLGHGEL-GGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELAL 222 (317)
T ss_pred cccCCCEEEEECCCHH-HHHHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhc
Confidence 3689999999999996 9999999999999998776431 2578999999999988873 34787755
Q ss_pred cCCCeEEEEeeccCC
Q 022295 229 IKPGAAVIDVGTNAV 243 (299)
Q Consensus 229 vk~gavVIDvg~~~~ 243 (299)
+|+|+++|++|.-.+
T Consensus 223 mk~ga~lIN~aRG~v 237 (317)
T PRK06487 223 MKPGALLINTARGGL 237 (317)
T ss_pred CCCCeEEEECCCccc
Confidence 599999999997654
No 90
>PRK07574 formate dehydrogenase; Provisional
Probab=97.92 E-value=2.1e-05 Score=77.00 Aligned_cols=133 Identities=21% Similarity=0.244 Sum_probs=87.9
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCC-C---CcC
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQ-A---MMI 224 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~-p---~~i 224 (299)
.++.||+|.|||.|.+ |+.+|..|...|++|..++++. .++.+.+++||+|+...+. | +++
T Consensus 188 ~~L~gktVGIvG~G~I-G~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li 266 (385)
T PRK07574 188 YDLEGMTVGIVGAGRI-GLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLF 266 (385)
T ss_pred eecCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHh
Confidence 4689999999999996 9999999999999999887642 3567889999999998883 3 357
Q ss_pred CCCc---cCCCeEEEEeeccCCCCCc-----cCCC--ceeeccCCchh--------hhhhhceeccCCCCccHHHHHHHH
Q 022295 225 KGSW---IKPGAAVIDVGTNAVDDST-----KKSG--YRLVGDVDFHE--------ACKVAGCVTPVPGGVGPMTVAMLL 286 (299)
Q Consensus 225 ~~~~---vk~gavVIDvg~~~~~~~~-----~~~g--~kl~GDvdf~~--------~~~~a~~iTPVPGGVGp~T~a~L~ 286 (299)
+.+. +|+|+++|+++.-..-+.. -.+| .....||=+.+ ..--.-.+||=-+|.-.=+..-+.
T Consensus 267 ~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~ 346 (385)
T PRK07574 267 DADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYA 346 (385)
T ss_pred CHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHH
Confidence 6644 5999999999976542210 0001 02456873321 111133678877776544444444
Q ss_pred HHHHHHHHHH
Q 022295 287 RNTLDGAKRV 296 (299)
Q Consensus 287 ~n~v~a~~~~ 296 (299)
..+++..+++
T Consensus 347 ~~~~~ni~~~ 356 (385)
T PRK07574 347 AGTREILECF 356 (385)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 91
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.92 E-value=2.7e-05 Score=74.06 Aligned_cols=80 Identities=26% Similarity=0.351 Sum_probs=66.8
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC---------CChhhhccCCcEEEEecC-CC---CcCCCCc-
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT---------TDPESIVREADIVIAAAG-QA---MMIKGSW- 228 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t---------~~l~~~~~~ADIVIsa~g-~p---~~i~~~~- 228 (299)
.+|.||++.|||.|.+ |+.+|.+|..-|++|..+++.. .++.+.+++||+|+..++ .| ++|+.+.
T Consensus 141 ~~L~gktvGIiG~G~I-G~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~ 219 (311)
T PRK08410 141 GEIKGKKWGIIGLGTI-GKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKEL 219 (311)
T ss_pred cccCCCEEEEECCCHH-HHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHH
Confidence 4689999999999996 9999999999999999887532 257889999999998887 33 4787755
Q ss_pred --cCCCeEEEEeeccCC
Q 022295 229 --IKPGAAVIDVGTNAV 243 (299)
Q Consensus 229 --vk~gavVIDvg~~~~ 243 (299)
+|||+++|++|.-.+
T Consensus 220 ~~Mk~~a~lIN~aRG~v 236 (311)
T PRK08410 220 KLLKDGAILINVGRGGI 236 (311)
T ss_pred HhCCCCeEEEECCCccc
Confidence 599999999997655
No 92
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=97.91 E-value=2.1e-05 Score=75.45 Aligned_cols=80 Identities=19% Similarity=0.326 Sum_probs=65.5
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC----------CChhhhccCCcEEEEecCCC----CcCCCC-
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT----------TDPESIVREADIVIAAAGQA----MMIKGS- 227 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t----------~~l~~~~~~ADIVIsa~g~p----~~i~~~- 227 (299)
..|.|+++.|||.|.+ |+++|..|...|++|+.++++. .++.+.+++||+|+.+++.. +++..+
T Consensus 142 ~~l~g~~VgIIG~G~I-G~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~ 220 (330)
T PRK12480 142 KPVKNMTVAIIGTGRI-GAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAM 220 (330)
T ss_pred cccCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHH
Confidence 4689999999999886 9999999999999999987542 36788999999999999853 345443
Q ss_pred --ccCCCeEEEEeeccCC
Q 022295 228 --WIKPGAAVIDVGTNAV 243 (299)
Q Consensus 228 --~vk~gavVIDvg~~~~ 243 (299)
.+++|+++|++|.-.+
T Consensus 221 l~~mk~gavlIN~aRG~~ 238 (330)
T PRK12480 221 FDHVKKGAILVNAARGAV 238 (330)
T ss_pred HhcCCCCcEEEEcCCccc
Confidence 3589999999997654
No 93
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.91 E-value=1.9e-05 Score=70.64 Aligned_cols=112 Identities=25% Similarity=0.303 Sum_probs=73.1
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-CCh-----------------hhhccCCcEEEEecCCCCc-
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-TDP-----------------ESIVREADIVIAAAGQAMM- 223 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-~~l-----------------~~~~~~ADIVIsa~g~p~~- 223 (299)
++++||+|+|||.|. ||.-.+..|+..|+.|+++...- +.+ .+.+..+|+||+||+.+.+
T Consensus 6 l~l~~k~vLVIGgG~-va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN 84 (202)
T PRK06718 6 IDLSNKRVVIVGGGK-VAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVN 84 (202)
T ss_pred EEcCCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHH
Confidence 578999999999877 59999999999999999996432 111 2457889999999998864
Q ss_pred --CCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhh---hceeccCCCCccHHHHHHHHHHHH
Q 022295 224 --IKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKV---AGCVTPVPGGVGPMTVAMLLRNTL 290 (299)
Q Consensus 224 --i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~---a~~iTPVPGGVGp~T~a~L~~n~v 290 (299)
|.... +.+.. +.+.-++. . ||+-|.++-+. .-+|| -||-+|..+..|=+++-
T Consensus 85 ~~i~~~a-~~~~l-vn~~d~~~----------~-~~f~~Pa~~~~g~l~iaIs--T~G~sP~la~~lr~~ie 141 (202)
T PRK06718 85 EQVKEDL-PENAL-FNVITDAE----------S-GNVVFPSALHRGKLTISVS--TDGASPKLAKKIRDELE 141 (202)
T ss_pred HHHHHHH-HhCCc-EEECCCCc----------c-CeEEEeeEEEcCCeEEEEE--CCCCChHHHHHHHHHHH
Confidence 43333 44543 34432321 2 34445543332 22333 47889988776655444
No 94
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=97.90 E-value=2.5e-05 Score=74.40 Aligned_cols=80 Identities=10% Similarity=0.120 Sum_probs=65.1
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC------------CChhhhccCCcEEEEecCC-C---CcCCC
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT------------TDPESIVREADIVIAAAGQ-A---MMIKG 226 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t------------~~l~~~~~~ADIVIsa~g~-p---~~i~~ 226 (299)
..+.||++.|||.|.+ |+.+|..|...|+.|+.++++. .++.+.+++||+|+...+. | +++..
T Consensus 132 ~~l~g~tvgIvG~G~I-G~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~ 210 (312)
T PRK15469 132 YHREDFTIGILGAGVL-GSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQ 210 (312)
T ss_pred CCcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHH
Confidence 4689999999999986 9999999999999998876432 2467889999999998883 3 25655
Q ss_pred C---ccCCCeEEEEeeccCC
Q 022295 227 S---WIKPGAAVIDVGTNAV 243 (299)
Q Consensus 227 ~---~vk~gavVIDvg~~~~ 243 (299)
+ .+|+|+++|++|--.+
T Consensus 211 ~~l~~mk~ga~lIN~aRG~v 230 (312)
T PRK15469 211 QLLEQLPDGAYLLNLARGVH 230 (312)
T ss_pred HHHhcCCCCcEEEECCCccc
Confidence 3 4689999999997654
No 95
>PRK12862 malic enzyme; Reviewed
Probab=97.90 E-value=5.7e-05 Score=79.70 Aligned_cols=172 Identities=19% Similarity=0.222 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHcC-CceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcc
Q 022295 54 QSYVSMKRKACAEVG-IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPL 132 (299)
Q Consensus 54 ~~Y~~~k~k~~~~~G-i~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~ 132 (299)
.-=...|.-.++.+| |++..+++... +.+|+.+.++.+- |++-||++.-= +.-+--++++.....-|+.-||.
T Consensus 94 ~pv~egK~~l~~~~~gi~~~~i~~~~~-d~d~~v~~v~~~~--p~f~~i~~ED~--~~~~~f~i~~~~~~~~~ip~f~D- 167 (763)
T PRK12862 94 KPVMEGKAVLFKKFAGIDVFDIELDES-DPDKLVEIVAALE--PTFGGINLEDI--KAPECFYIERELRERMKIPVFHD- 167 (763)
T ss_pred cchHHHHHHHHHhhcCCCccccccCCC-CHHHHHHHHHHhC--CCcceeeeecc--cCchHHHHHHHHHhcCCCceEec-
Confidence 344556777777764 88777777643 7789999999987 77888776321 11122445555554445665553
Q ss_pred cccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC---eEEEEcCC---------
Q 022295 133 NIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA---TVTIVHSH--------- 200 (299)
Q Consensus 133 n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga---tVtv~~~~--------- 200 (299)
+..+---.+..|++..++-.|.+++..++++.|+|.+ |..++.+|...|. .+++|+++
T Consensus 168 ---------D~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaa-g~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~ 237 (763)
T PRK12862 168 ---------DQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAA-ALACLDLLVSLGVKRENIWVTDIKGVVYEGRTE 237 (763)
T ss_pred ---------CcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHH-HHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCc
Confidence 2344445567889999999999999999999999998 9999999999997 68999854
Q ss_pred --------------CCChhhhccCCcEEEEecCCCCcCCCCccCC---CeEEEEeeccCC
Q 022295 201 --------------TTDPESIVREADIVIAAAGQAMMIKGSWIKP---GAAVIDVGTNAV 243 (299)
Q Consensus 201 --------------t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~---gavVIDvg~~~~ 243 (299)
..+|.+.++.+|++|...+ |+.++++|++. .-+|+=++ ||.
T Consensus 238 ~l~~~~~~~a~~~~~~~l~e~~~~~~v~iG~s~-~g~~~~~~v~~M~~~piifals-NP~ 295 (763)
T PRK12862 238 LMDPWKARYAQKTDARTLAEVIEGADVFLGLSA-AGVLKPEMVKKMAPRPLIFALA-NPT 295 (763)
T ss_pred cccHHHHHHhhhcccCCHHHHHcCCCEEEEcCC-CCCCCHHHHHHhccCCEEEeCC-CCc
Confidence 1357899999999998887 89999999854 67777766 443
No 96
>PRK08605 D-lactate dehydrogenase; Validated
Probab=97.88 E-value=3.9e-05 Score=73.52 Aligned_cols=81 Identities=22% Similarity=0.335 Sum_probs=64.7
Q ss_pred CCCcCCcEEEEEcCCccchHHHHHHH-hhCCCeEEEEcCCC-----------CChhhhccCCcEEEEecCCC----CcCC
Q 022295 162 GVTIKGKRAVVVGRSNIVGLPVSLLL-LKADATVTIVHSHT-----------TDPESIVREADIVIAAAGQA----MMIK 225 (299)
Q Consensus 162 ~~~l~gk~vvViG~s~~vG~pla~lL-~~~gatVtv~~~~t-----------~~l~~~~~~ADIVIsa~g~p----~~i~ 225 (299)
+.+|.|++|.|||.|.+ |+.+|..| ...|++|+..+++. .++.+.+++||+|+.+++.. +++.
T Consensus 141 ~~~l~g~~VgIIG~G~I-G~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~ 219 (332)
T PRK08605 141 SRSIKDLKVAVIGTGRI-GLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFN 219 (332)
T ss_pred cceeCCCEEEEECCCHH-HHHHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcC
Confidence 34689999999999886 99999999 55688998887532 36888999999999998743 3555
Q ss_pred C---CccCCCeEEEEeeccCC
Q 022295 226 G---SWIKPGAAVIDVGTNAV 243 (299)
Q Consensus 226 ~---~~vk~gavVIDvg~~~~ 243 (299)
. +++++|+++||++.-..
T Consensus 220 ~~~l~~mk~gailIN~sRG~~ 240 (332)
T PRK08605 220 ADLFKHFKKGAVFVNCARGSL 240 (332)
T ss_pred HHHHhcCCCCcEEEECCCCcc
Confidence 4 45799999999997544
No 97
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.88 E-value=1.1e-05 Score=69.81 Aligned_cols=77 Identities=21% Similarity=0.373 Sum_probs=56.9
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC----------------C------------------------CCh
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH----------------T------------------------TDP 204 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~----------------t------------------------~~l 204 (299)
+...+|+|+|.|. ||+.++.+|...|+.|++.+.. + ..+
T Consensus 18 ~~p~~vvv~G~G~-vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 96 (168)
T PF01262_consen 18 VPPAKVVVTGAGR-VGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNF 96 (168)
T ss_dssp E-T-EEEEESTSH-HHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred CCCeEEEEECCCH-HHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHH
Confidence 4568999999776 5999999999999999999743 1 135
Q ss_pred hhhccCCcEEEEecC-----CCCcCCCCcc---CCCeEEEEeeccC
Q 022295 205 ESIVREADIVIAAAG-----QAMMIKGSWI---KPGAAVIDVGTNA 242 (299)
Q Consensus 205 ~~~~~~ADIVIsa~g-----~p~~i~~~~v---k~gavVIDvg~~~ 242 (299)
.+.++.+|+||++.- .|.+|+.+++ ++|++|+|+.++.
T Consensus 97 ~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~D~ 142 (168)
T PF01262_consen 97 AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISCDQ 142 (168)
T ss_dssp HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTGGG
T ss_pred HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEecC
Confidence 578899999996542 4678988885 7899999999864
No 98
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=97.85 E-value=7e-05 Score=78.76 Aligned_cols=173 Identities=19% Similarity=0.243 Sum_probs=127.2
Q ss_pred cHHHHHHHHHHHHHcC-CceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCc
Q 022295 53 SQSYVSMKRKACAEVG-IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHP 131 (299)
Q Consensus 53 s~~Y~~~k~k~~~~~G-i~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~ 131 (299)
+.-=...|.-.++.+| |++..+.+... +.+|+.+.++.+- |++-||++.-= +.-+--++++.+..+-|+.-||.
T Consensus 85 ~~pv~egK~~l~~~~~gid~~~i~~~~~-d~de~v~~v~~~~--p~~g~i~~ED~--~~p~~f~i~~~~~~~~~ip~f~D 159 (752)
T PRK07232 85 SKPVMEGKGVLFKKFAGIDVFDIEVDEE-DPDKFIEAVAALE--PTFGGINLEDI--KAPECFYIEEKLRERMDIPVFHD 159 (752)
T ss_pred CccHHHHHHHHHHhhcCCCccccccCCC-CHHHHHHHHHHhC--CCccEEeeeec--CCchHHHHHHHHHHhcCCCeecc
Confidence 3444567777777765 88777777533 6789999998887 77888886421 11122445555544446666653
Q ss_pred ccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC---eEEEEcCC--------
Q 022295 132 LNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA---TVTIVHSH-------- 200 (299)
Q Consensus 132 ~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga---tVtv~~~~-------- 200 (299)
+..+---.+..|++..|+-.+.+++..++++.|+|.+ |-.++.+|...|. .+++|+++
T Consensus 160 ----------D~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaa-g~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~ 228 (752)
T PRK07232 160 ----------DQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAA-AIACLNLLVALGAKKENIIVCDSKGVIYKGRT 228 (752)
T ss_pred ----------ccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHH-HHHHHHHHHHcCCCcccEEEEcCCCeecCCCc
Confidence 2333344567889999999999999999999999998 9999999999997 68999754
Q ss_pred ---------------CCChhhhccCCcEEEEecCCCCcCCCCccCC---CeEEEEeeccCC
Q 022295 201 ---------------TTDPESIVREADIVIAAAGQAMMIKGSWIKP---GAAVIDVGTNAV 243 (299)
Q Consensus 201 ---------------t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~---gavVIDvg~~~~ 243 (299)
..+|.+.++.+|++|...+ |+.++++|++. ..+|+=+. ||.
T Consensus 229 ~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~s~-~g~~~~~~v~~M~~~piifals-NP~ 287 (752)
T PRK07232 229 EGMDEWKAAYAVDTDARTLAEAIEGADVFLGLSA-AGVLTPEMVKSMADNPIIFALA-NPD 287 (752)
T ss_pred ccccHHHHHHhccCCCCCHHHHHcCCCEEEEcCC-CCCCCHHHHHHhccCCEEEecC-CCC
Confidence 1357899999999998777 89999999854 67777776 444
No 99
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.83 E-value=9.2e-05 Score=70.65 Aligned_cols=74 Identities=18% Similarity=0.250 Sum_probs=59.9
Q ss_pred CCcEEEEEcCCccchHHHHHHHh-hCCC-eEEEEcCCC---------------------CChhhhccCCcEEEEecCCCC
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLL-KADA-TVTIVHSHT---------------------TDPESIVREADIVIAAAGQAM 222 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~-~~ga-tVtv~~~~t---------------------~~l~~~~~~ADIVIsa~g~p~ 222 (299)
..++++|||.|+. |+..+..++ .+++ +|++++++. .++++.+++||+||++|++++
T Consensus 126 ~~~~v~iiGaG~~-a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~ 204 (325)
T PRK08618 126 DAKTLCLIGTGGQ-AKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKT 204 (325)
T ss_pred CCcEEEEECCcHH-HHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCC
Confidence 5789999999997 988776664 4554 788887641 345678899999999999877
Q ss_pred c-CCCCccCCCeEEEEeecc
Q 022295 223 M-IKGSWIKPGAAVIDVGTN 241 (299)
Q Consensus 223 ~-i~~~~vk~gavVIDvg~~ 241 (299)
. ++ +|+++|+.|+-+|.+
T Consensus 205 p~i~-~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 205 PVFS-EKLKKGVHINAVGSF 223 (325)
T ss_pred cchH-HhcCCCcEEEecCCC
Confidence 5 78 999999999999975
No 100
>PLN02306 hydroxypyruvate reductase
Probab=97.81 E-value=4.2e-05 Score=74.88 Aligned_cols=81 Identities=20% Similarity=0.312 Sum_probs=64.9
Q ss_pred CCCcCCcEEEEEcCCccchHHHHHHHh-hCCCeEEEEcCC----------------------------CCChhhhccCCc
Q 022295 162 GVTIKGKRAVVVGRSNIVGLPVSLLLL-KADATVTIVHSH----------------------------TTDPESIVREAD 212 (299)
Q Consensus 162 ~~~l~gk~vvViG~s~~vG~pla~lL~-~~gatVtv~~~~----------------------------t~~l~~~~~~AD 212 (299)
+.++.||++.|||.|.+ |+.+|.+|. .-|++|...+++ ..++.+.+++||
T Consensus 160 g~~L~gktvGIiG~G~I-G~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sD 238 (386)
T PLN02306 160 GNLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREAD 238 (386)
T ss_pred CcCCCCCEEEEECCCHH-HHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCC
Confidence 35689999999999996 999999985 789999877532 136788999999
Q ss_pred EEEEecCC----CCcCCCCc---cCCCeEEEEeeccCC
Q 022295 213 IVIAAAGQ----AMMIKGSW---IKPGAAVIDVGTNAV 243 (299)
Q Consensus 213 IVIsa~g~----p~~i~~~~---vk~gavVIDvg~~~~ 243 (299)
+|+..++. .++|+.+. +|+|+++|++|.-.+
T Consensus 239 iV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~l 276 (386)
T PLN02306 239 VISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPV 276 (386)
T ss_pred EEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccc
Confidence 99987762 34787755 599999999997544
No 101
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=97.81 E-value=4.8e-05 Score=72.74 Aligned_cols=81 Identities=19% Similarity=0.290 Sum_probs=65.9
Q ss_pred CCCcCCcEEEEEcCCccchHHHHHHHh-hCCCeEEEEcCCC------------CChhhhccCCcEEEEecC-CC---CcC
Q 022295 162 GVTIKGKRAVVVGRSNIVGLPVSLLLL-KADATVTIVHSHT------------TDPESIVREADIVIAAAG-QA---MMI 224 (299)
Q Consensus 162 ~~~l~gk~vvViG~s~~vG~pla~lL~-~~gatVtv~~~~t------------~~l~~~~~~ADIVIsa~g-~p---~~i 224 (299)
+.+|.||++.|||.|.+ |+.+|..|. .-|++|...++.. .++.+.+++||+|+..++ .| ++|
T Consensus 140 g~~L~gktvGIiG~G~I-G~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li 218 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRI-GMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLF 218 (323)
T ss_pred cCCCCCCEEEEEcccHH-HHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhcc
Confidence 45799999999999996 999999997 7899988776442 256789999999998887 33 478
Q ss_pred CCCc---cCCCeEEEEeeccCC
Q 022295 225 KGSW---IKPGAAVIDVGTNAV 243 (299)
Q Consensus 225 ~~~~---vk~gavVIDvg~~~~ 243 (299)
..+. +|||+++|+++.-.+
T Consensus 219 ~~~~l~~mk~ga~lIN~aRG~v 240 (323)
T PRK15409 219 GAEQFAKMKSSAIFINAGRGPV 240 (323)
T ss_pred CHHHHhcCCCCeEEEECCCccc
Confidence 7655 589999999997654
No 102
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.80 E-value=0.00011 Score=70.40 Aligned_cols=88 Identities=20% Similarity=0.329 Sum_probs=67.4
Q ss_pred HHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhh-CC-CeEEEEcCC---------------------CCChhhh
Q 022295 151 PKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK-AD-ATVTIVHSH---------------------TTDPESI 207 (299)
Q Consensus 151 ~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~-~g-atVtv~~~~---------------------t~~l~~~ 207 (299)
+.+++...... ....++++|||+|+. |+..+..|.. ++ ..|++++++ ..++++.
T Consensus 118 a~~~~a~~~la--~~~~~~v~IiGaG~~-a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~a 194 (330)
T PRK08291 118 AAGAVAARHLA--REDASRAAVIGAGEQ-ARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEA 194 (330)
T ss_pred HHHHHHHHHhC--CCCCCEEEEECCCHH-HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHH
Confidence 45565555321 335689999999997 9988777764 55 479999865 1355678
Q ss_pred ccCCcEEEEecCCCC-cCCCCccCCCeEEEEeecc
Q 022295 208 VREADIVIAAAGQAM-MIKGSWIKPGAAVIDVGTN 241 (299)
Q Consensus 208 ~~~ADIVIsa~g~p~-~i~~~~vk~gavVIDvg~~ 241 (299)
+++|||||+||+... +++.+|+++|+.|..+|.+
T Consensus 195 l~~aDiVi~aT~s~~p~i~~~~l~~g~~v~~vg~d 229 (330)
T PRK08291 195 VAGADIIVTTTPSEEPILKAEWLHPGLHVTAMGSD 229 (330)
T ss_pred HccCCEEEEeeCCCCcEecHHHcCCCceEEeeCCC
Confidence 899999999999765 5899999999999999875
No 103
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=97.80 E-value=4.5e-05 Score=73.03 Aligned_cols=82 Identities=24% Similarity=0.330 Sum_probs=68.8
Q ss_pred hCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccCCcEEEEecCC-C---Cc
Q 022295 161 SGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVREADIVIAAAGQ-A---MM 223 (299)
Q Consensus 161 ~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~ADIVIsa~g~-p---~~ 223 (299)
.+.+|.||++-|||.|.+ |+.+|..|..-|+.|..+++.+ .+|.+.+++||+|+.-++. | ++
T Consensus 136 ~g~el~gkTvGIiG~G~I-G~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~ 214 (324)
T COG0111 136 RGTELAGKTVGIIGLGRI-GRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGL 214 (324)
T ss_pred ccccccCCEEEEECCCHH-HHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcc
Confidence 356889999999999996 9999999999999999998732 3588999999999988883 3 47
Q ss_pred CCCCc---cCCCeEEEEeeccCC
Q 022295 224 IKGSW---IKPGAAVIDVGTNAV 243 (299)
Q Consensus 224 i~~~~---vk~gavVIDvg~~~~ 243 (299)
|+.+. +|+|+++|+++.-.+
T Consensus 215 i~~~~~a~MK~gailIN~aRG~v 237 (324)
T COG0111 215 INAEELAKMKPGAILINAARGGV 237 (324)
T ss_pred cCHHHHhhCCCCeEEEECCCcce
Confidence 87755 489999999987654
No 104
>PLN03139 formate dehydrogenase; Provisional
Probab=97.78 E-value=5e-05 Score=74.35 Aligned_cols=132 Identities=19% Similarity=0.221 Sum_probs=87.5
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCCC----CcC
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQA----MMI 224 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~p----~~i 224 (299)
.+|.||+|.|||.|.+ |+.+|..|...|+.|..+++.. .++.+.+++||+|+..++.. ++|
T Consensus 195 ~~L~gktVGIVG~G~I-G~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li 273 (386)
T PLN03139 195 YDLEGKTVGTVGAGRI-GRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMF 273 (386)
T ss_pred cCCCCCEEEEEeecHH-HHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHh
Confidence 4799999999999996 9999999999999998887541 26788999999999988742 357
Q ss_pred CCCc---cCCCeEEEEeeccCCCCCc-----cCCCce---eeccCCchhh--------hhhhceeccCCCCccHHHHHHH
Q 022295 225 KGSW---IKPGAAVIDVGTNAVDDST-----KKSGYR---LVGDVDFHEA--------CKVAGCVTPVPGGVGPMTVAML 285 (299)
Q Consensus 225 ~~~~---vk~gavVIDvg~~~~~~~~-----~~~g~k---l~GDvdf~~~--------~~~a~~iTPVPGGVGp~T~a~L 285 (299)
+.+. +|+|+++|++|.-.+-|.. -.+| + ...||=+.+= .--.-.+||=-+|.-.-+..-+
T Consensus 274 ~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG-~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~ 352 (386)
T PLN03139 274 NKERIAKMKKGVLIVNNARGAIMDTQAVADACSSG-HIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRY 352 (386)
T ss_pred CHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcC-CceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHH
Confidence 6644 5899999999976543210 0011 3 3568843221 1113367886666544444333
Q ss_pred HHHHHHHHHHH
Q 022295 286 LRNTLDGAKRV 296 (299)
Q Consensus 286 ~~n~v~a~~~~ 296 (299)
...+++..++|
T Consensus 353 ~~~~~~nl~~~ 363 (386)
T PLN03139 353 AAGVKDMLDRY 363 (386)
T ss_pred HHHHHHHHHHH
Confidence 34344444444
No 105
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.74 E-value=0.00014 Score=69.20 Aligned_cols=77 Identities=29% Similarity=0.413 Sum_probs=59.0
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhh-CC-CeEEEEcCCC--------------------CChhhhccCCcEEEEecCCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLK-AD-ATVTIVHSHT--------------------TDPESIVREADIVIAAAGQA 221 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~-~g-atVtv~~~~t--------------------~~l~~~~~~ADIVIsa~g~p 221 (299)
....+++.|||.|.. |++.+..+.. ++ .+|++++++. .++.+.+++|||||++|+.+
T Consensus 122 ~~~~~~v~iiG~G~~-a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~ 200 (314)
T PRK06141 122 RKDASRLLVVGTGRL-ASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST 200 (314)
T ss_pred CCCCceEEEECCcHH-HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC
Confidence 346799999999886 9999875543 44 6899998751 23557889999999999977
Q ss_pred Cc-CCCCccCCCeEEEEeecc
Q 022295 222 MM-IKGSWIKPGAAVIDVGTN 241 (299)
Q Consensus 222 ~~-i~~~~vk~gavVIDvg~~ 241 (299)
.. ++.+|++||++|.=+|.+
T Consensus 201 ~pvl~~~~l~~g~~i~~ig~~ 221 (314)
T PRK06141 201 EPLVRGEWLKPGTHLDLVGNF 221 (314)
T ss_pred CCEecHHHcCCCCEEEeeCCC
Confidence 64 788999999955445544
No 106
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.72 E-value=0.00012 Score=74.18 Aligned_cols=91 Identities=20% Similarity=0.300 Sum_probs=68.0
Q ss_pred HHHHHHHHHhhCC----------CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------
Q 022295 151 PKGCLELLKRSGV----------TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT------------------- 201 (299)
Q Consensus 151 ~~av~~ll~~~~~----------~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t------------------- 201 (299)
.+|+++...+++. ...|.+|+|+|+|.+ |...+..+...||.|++++.+.
T Consensus 139 y~Av~~aa~~~~~~~~g~~taaG~~pg~kVlViGaG~i-GL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~ 217 (509)
T PRK09424 139 YRAVIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVA-GLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFE 217 (509)
T ss_pred HHHHHHHHHHhcccCCCceeccCCcCCCEEEEECCcHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccc
Confidence 4677777777654 346899999998875 9999999999999988886441
Q ss_pred --------------CC--------hhhhccCCcEEEEecCCCC-----cCCCCc---cCCCeEEEEeeccC
Q 022295 202 --------------TD--------PESIVREADIVIAAAGQAM-----MIKGSW---IKPGAAVIDVGTNA 242 (299)
Q Consensus 202 --------------~~--------l~~~~~~ADIVIsa~g~p~-----~i~~~~---vk~gavVIDvg~~~ 242 (299)
.+ +.+.++.+|+||+++|.|+ +++.++ +|+|.+|+|+|.+.
T Consensus 218 e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~ 288 (509)
T PRK09424 218 EEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAEN 288 (509)
T ss_pred cccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCC
Confidence 01 0122367999999999754 666655 58999999999863
No 107
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.72 E-value=4.8e-05 Score=65.27 Aligned_cols=74 Identities=24% Similarity=0.353 Sum_probs=55.4
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCCCC----c-CC---
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQAM----M-IK--- 225 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~p~----~-i~--- 225 (299)
++|-+||-|.+ |.++|..|.+.|.+|++++++. .++.+.++++|+||+++..+. . ..
T Consensus 2 ~~Ig~IGlG~m-G~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i 80 (163)
T PF03446_consen 2 MKIGFIGLGNM-GSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENI 80 (163)
T ss_dssp BEEEEE--SHH-HHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTH
T ss_pred CEEEEEchHHH-HHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHH
Confidence 57999999886 9999999999999999999762 467788999999999998644 2 23
Q ss_pred CCccCCCeEEEEeeccC
Q 022295 226 GSWIKPGAAVIDVGTNA 242 (299)
Q Consensus 226 ~~~vk~gavVIDvg~~~ 242 (299)
...+++|.++||.+...
T Consensus 81 ~~~l~~g~iiid~sT~~ 97 (163)
T PF03446_consen 81 LAGLRPGKIIIDMSTIS 97 (163)
T ss_dssp GGGS-TTEEEEE-SS--
T ss_pred hhccccceEEEecCCcc
Confidence 34568899999998653
No 108
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=97.71 E-value=0.00012 Score=71.67 Aligned_cols=171 Identities=19% Similarity=0.252 Sum_probs=124.5
Q ss_pred ccHHHHHHHHHHHHHc-CCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCC
Q 022295 52 DSQSYVSMKRKACAEV-GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130 (299)
Q Consensus 52 ~s~~Y~~~k~k~~~~~-Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~ 130 (299)
++.--...|.-.++++ ||++.-+++.. -+.+|+.+.++.+. |.+-||+++-==-++- ..+...+..+.|+.-||
T Consensus 98 ag~pVmeGKa~Lfk~faGid~~pI~ld~-~~~~ei~~~Vkal~--p~FgginLedi~ap~c--f~ie~~lr~~~~IPvFh 172 (432)
T COG0281 98 AGKPVMEGKAVLFKAFAGIDVLPIELDV-GTNNEIIEFVKALE--PTFGGINLEDIDAPRC--FAIEERLRYRMNIPVFH 172 (432)
T ss_pred cCcchhhhHHHHHHHhcCCCceeeEeeC-CChHHHHHHHHHhh--hcCCCcceeecccchh--hHHHHHHhhcCCCCccc
Confidence 4444456677777665 68888888864 35678999999997 5799999874211111 24555556677888877
Q ss_pred cccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC---eEEEEcCCC------
Q 022295 131 PLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA---TVTIVHSHT------ 201 (299)
Q Consensus 131 ~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga---tVtv~~~~t------ 201 (299)
.- +.+----|..|++..|+-.|.+|+..++++.|+|-+ |-.++.+|...|. .|++|+|+-
T Consensus 173 DD----------qqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAA-giaia~~l~~~g~~~~~i~~~D~~G~l~~~r 241 (432)
T COG0281 173 DD----------QQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAA-GIAIADLLVAAGVKEENIFVVDRKGLLYDGR 241 (432)
T ss_pred cc----------ccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHH-HHHHHHHHHHhCCCcccEEEEecCCcccCCC
Confidence 43 233223356889999999999999999999999988 9999999999997 599998751
Q ss_pred CCh-------------------hhhccCCcEEEEecCCCCcCCCCccCC---CeEEEEee
Q 022295 202 TDP-------------------ESIVREADIVIAAAGQAMMIKGSWIKP---GAAVIDVG 239 (299)
Q Consensus 202 ~~l-------------------~~~~~~ADIVIsa~g~p~~i~~~~vk~---gavVIDvg 239 (299)
.++ .+.+..||++|..+|. +.+++|||+. ..+|+=++
T Consensus 242 ~~~~~~~~k~~~a~~~~~~~~~~~~~~~adv~iG~S~~-G~~t~e~V~~Ma~~PiIfala 300 (432)
T COG0281 242 EDLTMNQKKYAKAIEDTGERTLDLALAGADVLIGVSGV-GAFTEEMVKEMAKHPIIFALA 300 (432)
T ss_pred cccccchHHHHHHHhhhccccccccccCCCEEEEcCCC-CCcCHHHHHHhccCCEEeecC
Confidence 010 2356789999988887 8999999854 56666655
No 109
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.71 E-value=0.00022 Score=67.56 Aligned_cols=77 Identities=16% Similarity=0.134 Sum_probs=62.0
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhh-CCC-eEEEEcCCC-------------------CChhhhccCCcEEEEecCCCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLK-ADA-TVTIVHSHT-------------------TDPESIVREADIVIAAAGQAM 222 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~-~ga-tVtv~~~~t-------------------~~l~~~~~~ADIVIsa~g~p~ 222 (299)
+...++++|||.|.. |+..+..+.. ++. +|.+++++. .++++.+.+|||||++|++++
T Consensus 122 ~~~~~~v~IiGaG~q-a~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~ 200 (304)
T PRK07340 122 PAPPGDLLLIGTGVQ-ARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT 200 (304)
T ss_pred CCCCCEEEEECCcHH-HHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC
Confidence 456799999999886 9999988864 453 688887651 246678899999999999877
Q ss_pred c-CCCCccCCCeEEEEeeccC
Q 022295 223 M-IKGSWIKPGAAVIDVGTNA 242 (299)
Q Consensus 223 ~-i~~~~vk~gavVIDvg~~~ 242 (299)
. ++. |+|||+.|.=+|.+.
T Consensus 201 Pl~~~-~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 201 PVYPE-AARAGRLVVAVGAFT 220 (304)
T ss_pred ceeCc-cCCCCCEEEecCCCC
Confidence 5 565 899999999999753
No 110
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.71 E-value=7.3e-05 Score=73.73 Aligned_cols=80 Identities=24% Similarity=0.357 Sum_probs=66.3
Q ss_pred CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC----------CChhhhccCCcEEEEecCC-C---CcCCCC
Q 022295 162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT----------TDPESIVREADIVIAAAGQ-A---MMIKGS 227 (299)
Q Consensus 162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t----------~~l~~~~~~ADIVIsa~g~-p---~~i~~~ 227 (299)
+.+|.||++.|||.|.+ |+.+|..|...|++|..++++. .++.+.+++||+|+..++. + ++++.+
T Consensus 146 ~~~L~gktvGIiG~G~I-G~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~ 224 (409)
T PRK11790 146 SFEVRGKTLGIVGYGHI-GTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAE 224 (409)
T ss_pred cccCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHH
Confidence 35799999999999996 9999999999999999887532 2688999999999988873 2 477765
Q ss_pred c---cCCCeEEEEeeccC
Q 022295 228 W---IKPGAAVIDVGTNA 242 (299)
Q Consensus 228 ~---vk~gavVIDvg~~~ 242 (299)
. +|+|+++|+++.-.
T Consensus 225 ~l~~mk~ga~lIN~aRG~ 242 (409)
T PRK11790 225 ELALMKPGAILINASRGT 242 (409)
T ss_pred HHhcCCCCeEEEECCCCc
Confidence 4 58999999999543
No 111
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=97.70 E-value=8.9e-05 Score=75.30 Aligned_cols=81 Identities=19% Similarity=0.261 Sum_probs=66.7
Q ss_pred CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------CCChhhhccCCcEEEEecCCC----CcC
Q 022295 162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------TTDPESIVREADIVIAAAGQA----MMI 224 (299)
Q Consensus 162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------t~~l~~~~~~ADIVIsa~g~p----~~i 224 (299)
+.+|.||++.|||.|.+ |+.+|..|...|++|..++++ ..++.+.+++||+|+..++.. +++
T Consensus 133 g~~l~gktvgIiG~G~I-G~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li 211 (525)
T TIGR01327 133 GTELYGKTLGVIGLGRI-GSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLI 211 (525)
T ss_pred ccccCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCc
Confidence 45799999999999996 999999999999999988753 136889999999999988832 356
Q ss_pred CCC---ccCCCeEEEEeeccCC
Q 022295 225 KGS---WIKPGAAVIDVGTNAV 243 (299)
Q Consensus 225 ~~~---~vk~gavVIDvg~~~~ 243 (299)
..+ .+|+|+++||++.-.+
T Consensus 212 ~~~~l~~mk~ga~lIN~aRG~~ 233 (525)
T TIGR01327 212 GAEELAKMKKGVIIVNCARGGI 233 (525)
T ss_pred CHHHHhcCCCCeEEEEcCCCce
Confidence 554 3589999999997654
No 112
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.66 E-value=0.0001 Score=74.82 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=66.5
Q ss_pred CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC------------CChhhhccCCcEEEEecCCC----CcCC
Q 022295 162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT------------TDPESIVREADIVIAAAGQA----MMIK 225 (299)
Q Consensus 162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t------------~~l~~~~~~ADIVIsa~g~p----~~i~ 225 (299)
+.++.||++.|||.|.+ |+.+|..|...|++|..++++. .++.+.+++||+|+.+++.. +++.
T Consensus 135 g~~l~gktvgIiG~G~I-G~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~ 213 (526)
T PRK13581 135 GVELYGKTLGIIGLGRI-GSEVAKRAKAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIG 213 (526)
T ss_pred ccccCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcC
Confidence 35689999999999986 9999999999999999887531 15678899999999988843 4676
Q ss_pred CC---ccCCCeEEEEeeccCC
Q 022295 226 GS---WIKPGAAVIDVGTNAV 243 (299)
Q Consensus 226 ~~---~vk~gavVIDvg~~~~ 243 (299)
++ .+|+|+++|+++.-..
T Consensus 214 ~~~l~~mk~ga~lIN~aRG~~ 234 (526)
T PRK13581 214 AEELAKMKPGVRIINCARGGI 234 (526)
T ss_pred HHHHhcCCCCeEEEECCCCce
Confidence 54 4589999999997654
No 113
>PRK12861 malic enzyme; Reviewed
Probab=97.63 E-value=0.00016 Score=76.22 Aligned_cols=172 Identities=17% Similarity=0.219 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHcC-CceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcc
Q 022295 54 QSYVSMKRKACAEVG-IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPL 132 (299)
Q Consensus 54 ~~Y~~~k~k~~~~~G-i~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~ 132 (299)
.-=...|.-.++.+| |++..+.+.. -+.+|+++.++.+. |.+-||++. --+.-+--++++....+=|+.-||.-
T Consensus 90 ~pvmeGK~~L~~~~agid~~di~~~~-~dpd~~v~~v~a~~--~~fg~i~lE--D~~~p~~f~il~~~~~~~~ipvf~DD 164 (764)
T PRK12861 90 KPVMEGKAVLFKKFAGIDVFDIEINE-TDPDKLVDIIAGLE--PTFGGINLE--DIKAPECFTVERKLRERMKIPVFHDD 164 (764)
T ss_pred cchHHHHHHHHhhccCCCccccccCC-CCHHHHHHHHHHHH--hhcCCceee--eccCchHHHHHHHHHhcCCCCeeccc
Confidence 344456777777765 8877777753 56789999998887 467775542 11111223344444333356555532
Q ss_pred cccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC---eEEEEcCC---------
Q 022295 133 NIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA---TVTIVHSH--------- 200 (299)
Q Consensus 133 n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga---tVtv~~~~--------- 200 (299)
..+---.|..|++..|+-.+.+++..++++.|+|.+ |..++.+|...|. .+++|+++
T Consensus 165 ----------~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaA-g~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~ 233 (764)
T PRK12861 165 ----------QHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAA-ALACLDLLVDLGLPVENIWVTDIEGVVYRGRTT 233 (764)
T ss_pred ----------cchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHH-HHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcc
Confidence 333334457789999999999999999999999998 9999999999998 58999854
Q ss_pred --------------CCChhhhccCCcEEEEecCCCCcCCCCccCC---CeEEEEeeccCC
Q 022295 201 --------------TTDPESIVREADIVIAAAGQAMMIKGSWIKP---GAAVIDVGTNAV 243 (299)
Q Consensus 201 --------------t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~---gavVIDvg~~~~ 243 (299)
..+|.+.++.+|++|...+ |+.+++||++. ..+|+=++ ||.
T Consensus 234 ~l~~~k~~~a~~~~~~~L~eai~~advliG~S~-~g~ft~e~v~~Ma~~PIIFaLs-NPt 291 (764)
T PRK12861 234 LMDPDKERFAQETDARTLAEVIGGADVFLGLSA-GGVLKAEMLKAMAARPLILALA-NPT 291 (764)
T ss_pred cCCHHHHHHHhhcCCCCHHHHHhcCCEEEEcCC-CCCCCHHHHHHhccCCEEEECC-CCC
Confidence 1357899999999998776 89999999854 67777776 554
No 114
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.59 E-value=7.9e-05 Score=59.38 Aligned_cols=60 Identities=35% Similarity=0.482 Sum_probs=45.4
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-----------CChhhhccCCcEEEEecCCCCc
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-----------TDPESIVREADIVIAAAGQAMM 223 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-----------~~l~~~~~~ADIVIsa~g~p~~ 223 (299)
++++|++|+|||.|. +|..-+..|++.||+||++.... ..+++.+..+|+||.|++.+.+
T Consensus 3 l~l~~~~vlVvGgG~-va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~at~d~~~ 73 (103)
T PF13241_consen 3 LDLKGKRVLVVGGGP-VAARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAATDDPEL 73 (103)
T ss_dssp E--TT-EEEEEEESH-HHHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE-SS-HHH
T ss_pred EEcCCCEEEEECCCH-HHHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEecCCCHHH
Confidence 478999999999877 59999999999999999997652 3445678899999999988753
No 115
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=97.50 E-value=0.00026 Score=66.68 Aligned_cols=72 Identities=32% Similarity=0.470 Sum_probs=59.0
Q ss_pred EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC---------------CChhhhccCCcEEEEecCCCC-----cCCC--
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT---------------TDPESIVREADIVIAAAGQAM-----MIKG-- 226 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t---------------~~l~~~~~~ADIVIsa~g~p~-----~i~~-- 226 (299)
+|..||-|.+ |.|+|..|.+.|..|++.+++. .+..+..+.||+||+.++.+. ++.+
T Consensus 2 kIafIGLG~M-G~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 2 KIAFIGLGIM-GSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred eEEEEcCchh-hHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 6899999987 9999999999999999999863 244578999999999999654 2332
Q ss_pred --CccCCCeEEEEeecc
Q 022295 227 --SWIKPGAAVIDVGTN 241 (299)
Q Consensus 227 --~~vk~gavVIDvg~~ 241 (299)
+..+||.++||..+.
T Consensus 81 ~~~~~~~G~i~IDmSTi 97 (286)
T COG2084 81 LLEGLKPGAIVIDMSTI 97 (286)
T ss_pred hhhcCCCCCEEEECCCC
Confidence 335789999999875
No 116
>PF08501 Shikimate_dh_N: Shikimate dehydrogenase substrate binding domain; InterPro: IPR013708 This domain is the substrate binding domain of shikimate dehydrogenase []. Shikimate dehydrogenase catalyses the fourth step of the mycobacterial Shikimate pathway, which results in the biosynthesis of chorismate. Chorismate is a precursor of aromatic amino acids, naphthoquinones, menaquinones and mycobactins [, ]. This pathway is an important target for antibacterial agents, especially against Mycobacterium tuberculosis, since it does not occur in mammals.; GO: 0004764 shikimate 3-dehydrogenase (NADP+) activity, 0055114 oxidation-reduction process; PDB: 3U62_A 2EGG_A 1P74_B 1P77_A 3O8Q_A 3TNL_C 3TOZ_G 1NYT_C 1VI2_B 1NPD_A ....
Probab=97.47 E-value=7e-05 Score=57.62 Aligned_cols=60 Identities=22% Similarity=0.346 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCc
Q 022295 58 SMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISL 122 (299)
Q Consensus 58 ~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p 122 (299)
.++++.++++|++..|..++ +.++++.+.++.+.. +++.|++|++|+++.+ ..+++.+++
T Consensus 13 ~~hn~~f~~~g~~~~Y~~~~--v~~~~l~~~~~~~~~-~~~~G~~VT~P~K~~~--~~~~D~~~~ 72 (83)
T PF08501_consen 13 LIHNAAFEALGLDAVYIPFE--VEPEDLEDFLDALRA-PNFRGLNVTMPHKEAA--IPYLDELSP 72 (83)
T ss_dssp HHHHHHHHHTTSSEEEEEEE--TSTTCHHHHHHHHHH-TTESEEEE-TTSTTHH--GGGSSEE-H
T ss_pred HHHHHHHHHcCCCcEEEEee--cCHHHHHHHHHHHhc-CCCCeeeecchHHHHH--HHHhccCCH
Confidence 47899999999999999886 667788888888887 7899999999999543 334444444
No 117
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=97.44 E-value=0.00029 Score=67.56 Aligned_cols=81 Identities=22% Similarity=0.379 Sum_probs=66.7
Q ss_pred CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC------------CChhhhccCCcEEEEecC-CC---CcCC
Q 022295 162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT------------TDPESIVREADIVIAAAG-QA---MMIK 225 (299)
Q Consensus 162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t------------~~l~~~~~~ADIVIsa~g-~p---~~i~ 225 (299)
+.++.||++-|||.|.+ |+.+|+.|..-|+.|...+++. -++.+.+++||+|+...+ .| |+|.
T Consensus 141 ~~~l~gktvGIiG~GrI-G~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin 219 (324)
T COG1052 141 GFDLRGKTLGIIGLGRI-GQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLIN 219 (324)
T ss_pred ccCCCCCEEEEECCCHH-HHHHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcC
Confidence 35789999999999997 9999999998889998887653 137789999999998877 33 4787
Q ss_pred CCc---cCCCeEEEEeeccCC
Q 022295 226 GSW---IKPGAAVIDVGTNAV 243 (299)
Q Consensus 226 ~~~---vk~gavVIDvg~~~~ 243 (299)
.+. +|+|+++|++|.-.+
T Consensus 220 ~~~l~~mk~ga~lVNtaRG~~ 240 (324)
T COG1052 220 AEELAKMKPGAILVNTARGGL 240 (324)
T ss_pred HHHHHhCCCCeEEEECCCccc
Confidence 755 589999999997654
No 118
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.43 E-value=0.00021 Score=61.44 Aligned_cols=115 Identities=14% Similarity=0.160 Sum_probs=71.2
Q ss_pred CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-CCCh--------------hhhccCCcEEEEecCCCCc--C
Q 022295 162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-TTDP--------------ESIVREADIVIAAAGQAMM--I 224 (299)
Q Consensus 162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-t~~l--------------~~~~~~ADIVIsa~g~p~~--i 224 (299)
.++++|++|+|||.|. ||.-.+..|+..|+.|+++... ++++ ++.+.+||+||.||+.+.. .
T Consensus 8 ~l~l~~~~vlVvGGG~-va~rka~~Ll~~ga~V~VIsp~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e~N~~ 86 (157)
T PRK06719 8 MFNLHNKVVVIIGGGK-IAYRKASGLKDTGAFVTVVSPEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHAVNMM 86 (157)
T ss_pred EEEcCCCEEEEECCCH-HHHHHHHHHHhCCCEEEEEcCccCHHHHhccCcEEEecccChhcCCCceEEEECCCCHHHHHH
Confidence 3578999999999777 5999999999999999998532 1111 1347889999999997753 1
Q ss_pred CCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhh---hceeccCCCCccHHHHHHHHHHHHH
Q 022295 225 KGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKV---AGCVTPVPGGVGPMTVAMLLRNTLD 291 (299)
Q Consensus 225 ~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~---a~~iTPVPGGVGp~T~a~L~~n~v~ 291 (299)
-...-+.+. .+.+.-++. . ||+-|.+.-+. .-++| -||-+|.-...|=+++-.
T Consensus 87 i~~~a~~~~-~vn~~d~~~----------~-~~f~~pa~v~~~~l~iais--T~G~sP~la~~lr~~ie~ 142 (157)
T PRK06719 87 VKQAAHDFQ-WVNVVSDGT----------E-SSFHTPGVIRNDEYVVTIS--TSGKDPSFTKRLKQELTS 142 (157)
T ss_pred HHHHHHHCC-cEEECCCCC----------c-CcEEeeeEEEECCeEEEEE--CCCcChHHHHHHHHHHHH
Confidence 122223333 333332221 1 33334443222 22333 478888888777665543
No 119
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=97.42 E-value=0.0003 Score=68.51 Aligned_cols=73 Identities=19% Similarity=0.332 Sum_probs=58.1
Q ss_pred CcEEEEEc-CCccchHHHHHHHhhCCCeEEEEcCCC-CChhhhccCCcEEEEecCCCC---cCC--CCccCCCeEEEEee
Q 022295 167 GKRAVVVG-RSNIVGLPVSLLLLKADATVTIVHSHT-TDPESIVREADIVIAAAGQAM---MIK--GSWIKPGAAVIDVG 239 (299)
Q Consensus 167 gk~vvViG-~s~~vG~pla~lL~~~gatVtv~~~~t-~~l~~~~~~ADIVIsa~g~p~---~i~--~~~vk~gavVIDvg 239 (299)
.++|+||| .|. +|..++..|.+.|..|+++++.. .+..+.+++||+||.|++... ++. .. +++|++|+|+|
T Consensus 98 ~~~I~IiGG~Gl-mG~slA~~l~~~G~~V~~~d~~~~~~~~~~~~~aDlVilavP~~~~~~~~~~l~~-l~~~~iv~Dv~ 175 (374)
T PRK11199 98 LRPVVIVGGKGQ-LGRLFAKMLTLSGYQVRILEQDDWDRAEDILADAGMVIVSVPIHLTEEVIARLPP-LPEDCILVDLT 175 (374)
T ss_pred cceEEEEcCCCh-hhHHHHHHHHHCCCeEEEeCCCcchhHHHHHhcCCEEEEeCcHHHHHHHHHHHhC-CCCCcEEEECC
Confidence 47899999 555 59999999999999999998754 356677899999999998433 221 12 78999999998
Q ss_pred cc
Q 022295 240 TN 241 (299)
Q Consensus 240 ~~ 241 (299)
..
T Consensus 176 Sv 177 (374)
T PRK11199 176 SV 177 (374)
T ss_pred Cc
Confidence 73
No 120
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.37 E-value=0.00039 Score=65.62 Aligned_cols=73 Identities=12% Similarity=0.221 Sum_probs=59.0
Q ss_pred CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-CCChhhhccCCcEEEEecCCCCc---C---CCCccCCCeEEEEe
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-TTDPESIVREADIVIAAAGQAMM---I---KGSWIKPGAAVIDV 238 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-t~~l~~~~~~ADIVIsa~g~p~~---i---~~~~vk~gavVIDv 238 (299)
.+++|.|||.|.+ |.++|..|.+.|.+|++.+++ +.++.+.+++||+||.+++...+ + .+..+++++++||.
T Consensus 3 ~~m~I~iiG~G~~-G~~lA~~l~~~G~~V~~~~r~~~~~~~~~~~~advvi~~vp~~~~~~v~~~l~~~~~~~~~ivi~~ 81 (308)
T PRK14619 3 QPKTIAILGAGAW-GSTLAGLASANGHRVRVWSRRSGLSLAAVLADADVIVSAVSMKGVRPVAEQVQALNLPPETIIVTA 81 (308)
T ss_pred CCCEEEEECccHH-HHHHHHHHHHCCCEEEEEeCCCCCCHHHHHhcCCEEEEECChHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 4678999998875 999999999999999999875 35788889999999999986532 2 22236788999997
Q ss_pred e
Q 022295 239 G 239 (299)
Q Consensus 239 g 239 (299)
.
T Consensus 82 s 82 (308)
T PRK14619 82 T 82 (308)
T ss_pred C
Confidence 5
No 121
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.32 E-value=0.00057 Score=65.33 Aligned_cols=75 Identities=17% Similarity=0.348 Sum_probs=57.3
Q ss_pred CCcEEEEEcCCccchHHHHHHHhh--CCCeEEEEcCCC--------------------CChhhhccCCcEEEEecCCCC-
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLLK--ADATVTIVHSHT--------------------TDPESIVREADIVIAAAGQAM- 222 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~~--~gatVtv~~~~t--------------------~~l~~~~~~ADIVIsa~g~p~- 222 (299)
.-+++.|||.|.. |+..++.|.. ...+|.+++++. .+.++.+++|||||++|++..
T Consensus 127 ~~~~lgiiG~G~q-A~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~P 205 (325)
T TIGR02371 127 DSSVLGIIGAGRQ-AWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRKP 205 (325)
T ss_pred CCCEEEEECCCHH-HHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCCc
Confidence 3578999998875 8875555433 235788886541 356688999999999998655
Q ss_pred cCCCCccCCCeEEEEeecc
Q 022295 223 MIKGSWIKPGAAVIDVGTN 241 (299)
Q Consensus 223 ~i~~~~vk~gavVIDvg~~ 241 (299)
++..+|+|||+.|.-+|.+
T Consensus 206 ~~~~~~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 206 VVKADWVSEGTHINAIGAD 224 (325)
T ss_pred EecHHHcCCCCEEEecCCC
Confidence 5799999999999999965
No 122
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.29 E-value=0.00066 Score=64.58 Aligned_cols=40 Identities=30% Similarity=0.659 Sum_probs=27.3
Q ss_pred ChhhhccCCcEEEEecCCCC---cCCCCccCCCeEEEEeeccC
Q 022295 203 DPESIVREADIVIAAAGQAM---MIKGSWIKPGAAVIDVGTNA 242 (299)
Q Consensus 203 ~l~~~~~~ADIVIsa~g~p~---~i~~~~vk~gavVIDvg~~~ 242 (299)
+.++.+++|||||++|++.. +++.+|++||+.|.-+|.+.
T Consensus 185 ~~~~av~~aDii~taT~s~~~~P~~~~~~l~~g~hi~~iGs~~ 227 (313)
T PF02423_consen 185 SAEEAVRGADIIVTATPSTTPAPVFDAEWLKPGTHINAIGSYT 227 (313)
T ss_dssp SHHHHHTTSSEEEE----SSEEESB-GGGS-TT-EEEE-S-SS
T ss_pred chhhhcccCCEEEEccCCCCCCccccHHHcCCCcEEEEecCCC
Confidence 57899999999999999655 68999999999999999763
No 123
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=97.29 E-value=0.0063 Score=58.05 Aligned_cols=188 Identities=14% Similarity=0.109 Sum_probs=116.0
Q ss_pred eeeccHHHHHHHHHHHHHHHHHHHhcCC-----CCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCC-CCHH
Q 022295 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYG-----KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQ-VSEA 83 (299)
Q Consensus 10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~-----~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~-~~~~ 83 (299)
.+|+-+.+.++=.+.|-+...++++... .+-+....++= .|+...-. +=..++.++|-++.++.-.+. +..+
T Consensus 8 ~ll~~~dls~~ei~~ll~~A~~~k~~~~~~~~~L~gk~l~~lF~-epSTRTR~-SFe~A~~~LGg~~i~l~~~~~~~~~~ 85 (311)
T PRK14804 8 HLISWEDWSDSEILDLLDFAVHVKKNRVNYAGHMSGRSLAMLFQ-KTSTRTRV-SFEVAMTEMGGHGIYLDWMASNFQLS 85 (311)
T ss_pred CcCchhhCCHHHHHHHHHHHHHHHhhhhccCcCCCCCEEEEEEc-CCchhHHH-HHHHHHHHcCCeEEEeCCCccccccc
Confidence 3566566654433444444444543210 11222222332 35444444 457899999999888865322 2223
Q ss_pred HHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHHHhhC
Q 022295 84 ELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSG 162 (299)
Q Consensus 84 el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~ 162 (299)
.+.+..+-|+. -+|+|.+-.|-. -....+.+. - .+-.+|.| .....||=+.+ ++.+.++.|
T Consensus 86 ~~~dt~~vls~--~~D~iv~R~~~~--~~~~~~a~~----~---~vPVINag-------~~~~HPtQaL~Dl~Ti~e~~g 147 (311)
T PRK14804 86 DIDLEARYLSR--NVSVIMARLKKH--EDLLVMKNG----S---QVPVINGC-------DNMFHPCQSLADIMTIALDSP 147 (311)
T ss_pred cHHHHHHHHHh--cCCEEEEeCCCh--HHHHHHHHH----C---CCCEEECC-------CCCCChHHHHHHHHHHHHHhC
Confidence 34344666665 589999987633 222222221 1 23445643 22468998888 555556666
Q ss_pred C-CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC----------------------CCChhhhccCCcEEEEe
Q 022295 163 V-TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH----------------------TTDPESIVREADIVIAA 217 (299)
Q Consensus 163 ~-~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~----------------------t~~l~~~~~~ADIVIsa 217 (299)
. +++|++|+++|.++-|.+.++.++...|+.|++++-. +.++.+.++.||+|.+-
T Consensus 148 ~~~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d 225 (311)
T PRK14804 148 EIPLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTD 225 (311)
T ss_pred CCCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEee
Confidence 4 7999999999997788999999999999999999742 24567888999999873
No 124
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.24 E-value=0.0007 Score=64.59 Aligned_cols=39 Identities=18% Similarity=0.492 Sum_probs=34.3
Q ss_pred ChhhhccCCcEEEEecCCCC-cCCCCccCCCeEEEEeecc
Q 022295 203 DPESIVREADIVIAAAGQAM-MIKGSWIKPGAAVIDVGTN 241 (299)
Q Consensus 203 ~l~~~~~~ADIVIsa~g~p~-~i~~~~vk~gavVIDvg~~ 241 (299)
+.++.+++||||+++|++.. +++.+|++||+.|.=+|.+
T Consensus 185 ~~~~av~~ADIV~taT~s~~P~~~~~~l~~G~hi~~iGs~ 224 (315)
T PRK06823 185 DAAEVAHAANLIVTTTPSREPLLQAEDIQPGTHITAVGAD 224 (315)
T ss_pred CHHHHhcCCCEEEEecCCCCceeCHHHcCCCcEEEecCCC
Confidence 56788999999999999655 5899999999999999965
No 125
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.23 E-value=0.0012 Score=65.95 Aligned_cols=129 Identities=22% Similarity=0.230 Sum_probs=75.7
Q ss_pred HHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC----ChhhhccCCcEEEEecCC-CCcCCCCccCCC
Q 022295 158 LKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT----DPESIVREADIVIAAAGQ-AMMIKGSWIKPG 232 (299)
Q Consensus 158 l~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~----~l~~~~~~ADIVIsa~g~-p~~i~~~~vk~g 232 (299)
|.+.+.++++++|+|+|.|.+ |..+|..|.++|++|++++.... .+.+.+++..+-+.. |. +. ......
T Consensus 7 ~~~~~~~~~~~~v~viG~G~~-G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~-~~~~~----~~~~~D 80 (480)
T PRK01438 7 LTSWHSDWQGLRVVVAGLGVS-GFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRL-GPGPT----LPEDTD 80 (480)
T ss_pred hhhcccCcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEE-CCCcc----ccCCCC
Confidence 566778889999999998886 99999999999999999985532 122333333332211 11 11 111233
Q ss_pred eEEEEeeccCCCCC---ccCCCceeeccCCch-hhhh---hhceeccCCCCccHHHHHHHHHHHHHHH
Q 022295 233 AAVIDVGTNAVDDS---TKKSGYRLVGDVDFH-EACK---VAGCVTPVPGGVGPMTVAMLLRNTLDGA 293 (299)
Q Consensus 233 avVIDvg~~~~~~~---~~~~g~kl~GDvdf~-~~~~---~a~~iTPVPGGVGp~T~a~L~~n~v~a~ 293 (299)
.+|+-.|+++.... -...|-.+.|+.++- ...+ +...| -|-|-.|.=|+.-|+.++++..
T Consensus 81 ~Vv~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I-~VTGTnGKTTTt~mi~~iL~~~ 147 (480)
T PRK01438 81 LVVTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWL-AVTGTNGKTTTVQMLASMLRAA 147 (480)
T ss_pred EEEECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEE-EEeCCCcHHHHHHHHHHHHHHc
Confidence 44555555442110 001122466666652 2211 11112 3568889999999999988754
No 126
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.20 E-value=0.0006 Score=58.20 Aligned_cols=69 Identities=29% Similarity=0.442 Sum_probs=51.4
Q ss_pred EEEEEcCCccchHHHHHHHhhCCCeEEEEcCC----------------------------CCChhhhccCCcEEEEecCC
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSH----------------------------TTDPESIVREADIVIAAAGQ 220 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~----------------------------t~~l~~~~~~ADIVIsa~g~ 220 (299)
+|+|+|+|.. |.++|..|..+|.+|++..++ |.|+++.+++||+||.++++
T Consensus 1 KI~ViGaG~~-G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs 79 (157)
T PF01210_consen 1 KIAVIGAGNW-GTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS 79 (157)
T ss_dssp EEEEESSSHH-HHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G
T ss_pred CEEEECcCHH-HHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH
Confidence 6899998886 999999999999999999754 35788999999999999986
Q ss_pred CCc---C--CCCccCCCeEEEEe
Q 022295 221 AMM---I--KGSWIKPGAAVIDV 238 (299)
Q Consensus 221 p~~---i--~~~~vk~gavVIDv 238 (299)
..+ + =..+++++..+|-+
T Consensus 80 ~~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 80 QAHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp GGHHHHHHHHTTTSHTT-EEEET
T ss_pred HHHHHHHHHHhhccCCCCEEEEe
Confidence 442 2 12445778777754
No 127
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=97.16 E-value=0.00081 Score=63.11 Aligned_cols=93 Identities=16% Similarity=0.328 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhC----CC-------eEEEEcCC-----------------
Q 022295 149 CTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKA----DA-------TVTIVHSH----------------- 200 (299)
Q Consensus 149 cT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~----ga-------tVtv~~~~----------------- 200 (299)
++-.|++..++-.+.+|+..+++++|+|.+ |..++.+|... |. .+++|+++
T Consensus 7 V~lAgllnAlk~~g~~l~d~~iv~~GAGsA-g~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~ 85 (279)
T cd05312 7 VALAGLLAALRITGKPLSDQRILFLGAGSA-GIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPF 85 (279)
T ss_pred HHHHHHHHHHHHhCCChhhcEEEEECcCHH-HHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHH
Confidence 456789999999999999999999999987 99999888765 76 68899764
Q ss_pred ---C-----CChhhhcc--CCcEEEEecCCCCcCCCCccC------CCeEEEEeeccCC
Q 022295 201 ---T-----TDPESIVR--EADIVIAAAGQAMMIKGSWIK------PGAAVIDVGTNAV 243 (299)
Q Consensus 201 ---t-----~~l~~~~~--~ADIVIsa~g~p~~i~~~~vk------~gavVIDvg~~~~ 243 (299)
+ .+|.+.++ ++|++|..++.|+.+++++|+ +.-+|+=++ ||.
T Consensus 86 a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt 143 (279)
T cd05312 86 ARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALS-NPT 143 (279)
T ss_pred HhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECC-CcC
Confidence 1 25778888 899999999999999999885 466777666 443
No 128
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.13 E-value=0.00088 Score=60.06 Aligned_cols=59 Identities=31% Similarity=0.450 Sum_probs=47.4
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-Ch-----------------hhhccCCcEEEEecCCCC
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-DP-----------------ESIVREADIVIAAAGQAM 222 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-~l-----------------~~~~~~ADIVIsa~g~p~ 222 (299)
++++||+|+|||.|. ||..-+..|++.||.||++..... .+ .+.+..+|+||.|||.+.
T Consensus 5 l~l~gk~vlVvGgG~-va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~ 81 (205)
T TIGR01470 5 ANLEGRAVLVVGGGD-VALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEE 81 (205)
T ss_pred EEcCCCeEEEECcCH-HHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHH
Confidence 468999999999776 599999999999999999965421 11 234778999999999864
No 129
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.12 E-value=0.0008 Score=60.60 Aligned_cols=72 Identities=29% Similarity=0.320 Sum_probs=57.1
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-----------------ChhhhccCCcEEEEecCCCCcC---C--
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-----------------DPESIVREADIVIAAAGQAMMI---K-- 225 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-----------------~l~~~~~~ADIVIsa~g~p~~i---~-- 225 (299)
+++.|+|+|++ |..++..|...|.+|++-+|+.+ ...+..+.|||||.|++..... .
T Consensus 2 ~~~~i~GtGni-G~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l 80 (211)
T COG2085 2 MIIAIIGTGNI-GSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDVLAEL 80 (211)
T ss_pred cEEEEeccChH-HHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHhHHHHH
Confidence 46899999996 99999999999999999987643 2447889999999999965542 1
Q ss_pred CCccCCCeEEEEeeccC
Q 022295 226 GSWIKPGAAVIDVGTNA 242 (299)
Q Consensus 226 ~~~vk~gavVIDvg~~~ 242 (299)
.+++. |.+|||.. ||
T Consensus 81 ~~~~~-~KIvID~t-np 95 (211)
T COG2085 81 RDALG-GKIVIDAT-NP 95 (211)
T ss_pred HHHhC-CeEEEecC-CC
Confidence 23344 89999987 44
No 130
>PLN02712 arogenate dehydrogenase
Probab=97.12 E-value=0.00088 Score=70.01 Aligned_cols=80 Identities=14% Similarity=0.168 Sum_probs=60.6
Q ss_pred hCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-------------Chhhhcc-CCcEEEEecCCCC---c
Q 022295 161 SGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-------------DPESIVR-EADIVIAAAGQAM---M 223 (299)
Q Consensus 161 ~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-------------~l~~~~~-~ADIVIsa~g~p~---~ 223 (299)
.+.++++++|.|||.|.+ |..++..|.+.|.+|+++++... ++.+.+. .+|+||.+++... +
T Consensus 363 ~~~~~~~~kIgIIGlG~m-G~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~~~~~v 441 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNF-GQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTSILSTEKV 441 (667)
T ss_pred ccCCCCCCEEEEEecCHH-HHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCChHHHHHH
Confidence 356779999999998885 99999999999999998876532 3334454 5899999988432 2
Q ss_pred C---CCCccCCCeEEEEeecc
Q 022295 224 I---KGSWIKPGAAVIDVGTN 241 (299)
Q Consensus 224 i---~~~~vk~gavVIDvg~~ 241 (299)
+ ....+++|++|+|++..
T Consensus 442 i~~l~~~~lk~g~ivvDv~Sv 462 (667)
T PLN02712 442 LKSLPFQRLKRSTLFVDVLSV 462 (667)
T ss_pred HHHHHHhcCCCCcEEEECCCc
Confidence 2 22357899999999864
No 131
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=97.10 E-value=0.00076 Score=62.50 Aligned_cols=93 Identities=17% Similarity=0.242 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-----------eEEEEcCC-----------------
Q 022295 149 CTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-----------TVTIVHSH----------------- 200 (299)
Q Consensus 149 cT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-----------tVtv~~~~----------------- 200 (299)
+|-.|++..++-.+.+|+..+++++|+|-+ |..++.+|...+. .+++|+++
T Consensus 7 V~lAgllnAlk~~g~~l~d~riv~~GAGsA-g~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~ 85 (254)
T cd00762 7 VAVAGLLAALKVTKKKISEHKVLFNGAGAA-ALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHL 85 (254)
T ss_pred HHHHHHHHHHHHhCCChhhcEEEEECcCHH-HHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHH
Confidence 356789999999999999999999999987 9999998876543 58888764
Q ss_pred ---------CCChhhhcc--CCcEEEEecCCCCcCCCCccC------CCeEEEEeeccCC
Q 022295 201 ---------TTDPESIVR--EADIVIAAAGQAMMIKGSWIK------PGAAVIDVGTNAV 243 (299)
Q Consensus 201 ---------t~~l~~~~~--~ADIVIsa~g~p~~i~~~~vk------~gavVIDvg~~~~ 243 (299)
..+|.+.++ ++|++|..++.|+.+++|+|+ +.-+|+=++ ||.
T Consensus 86 ~~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt 144 (254)
T cd00762 86 ARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALS-NPT 144 (254)
T ss_pred HHHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECC-CcC
Confidence 125778888 999999999999999999985 356776666 443
No 132
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=97.10 E-value=0.0008 Score=64.65 Aligned_cols=80 Identities=18% Similarity=0.327 Sum_probs=62.0
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-------------ChhhhccCCcEEEEecC-CC---CcCC
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-------------DPESIVREADIVIAAAG-QA---MMIK 225 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-------------~l~~~~~~ADIVIsa~g-~p---~~i~ 225 (299)
.++.||+|.|+|.|.+ |+.+|..|..-|+.+.-+.++.. ++.+.++++|+||.+.+ .+ |++.
T Consensus 158 ~~~~gK~vgilG~G~I-G~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liN 236 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRI-GKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLIN 236 (336)
T ss_pred ccccCCEEEEecCcHH-HHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhh
Confidence 5789999999999997 99999999988854444443322 67788999999998887 33 3676
Q ss_pred C---CccCCCeEEEEeeccCC
Q 022295 226 G---SWIKPGAAVIDVGTNAV 243 (299)
Q Consensus 226 ~---~~vk~gavVIDvg~~~~ 243 (299)
+ ++.|+|+++|+++.-..
T Consensus 237 k~~~~~mk~g~vlVN~aRG~i 257 (336)
T KOG0069|consen 237 KKFIEKMKDGAVLVNTARGAI 257 (336)
T ss_pred HHHHHhcCCCeEEEecccccc
Confidence 5 45699999999986543
No 133
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.10 E-value=0.00088 Score=62.51 Aligned_cols=72 Identities=18% Similarity=0.338 Sum_probs=56.1
Q ss_pred EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCCCC----c-CCC---
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQAM----M-IKG--- 226 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~p~----~-i~~--- 226 (299)
+|.|||.|.+ |.+++..|++.|..|++++++. .+..+.+++||+||.+++.+. . ...
T Consensus 1 ~IgvIG~G~m-G~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~ 79 (291)
T TIGR01505 1 KVGFIGLGIM-GSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGI 79 (291)
T ss_pred CEEEEEecHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchH
Confidence 4789998885 9999999999999999998652 356678899999999998542 1 121
Q ss_pred -CccCCCeEEEEeecc
Q 022295 227 -SWIKPGAAVIDVGTN 241 (299)
Q Consensus 227 -~~vk~gavVIDvg~~ 241 (299)
..+++|+++||.+..
T Consensus 80 ~~~~~~g~iivd~st~ 95 (291)
T TIGR01505 80 IEGAKPGKTLVDMSSI 95 (291)
T ss_pred hhcCCCCCEEEECCCC
Confidence 245789999998653
No 134
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.06 E-value=0.0013 Score=63.66 Aligned_cols=74 Identities=14% Similarity=0.269 Sum_probs=50.8
Q ss_pred cEEEEEcCCccchHHHHHHHhh-CC-CeEEEEcCC--------------------CCChhhhccCCcEEEEecCCC---C
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLK-AD-ATVTIVHSH--------------------TTDPESIVREADIVIAAAGQA---M 222 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~-~g-atVtv~~~~--------------------t~~l~~~~~~ADIVIsa~g~p---~ 222 (299)
+++.|||.|.- ++.-++.+.. +. -+|++.+++ ..+.++.+++||||+++|+++ .
T Consensus 130 ~~l~iiGaG~Q-A~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~~~P 208 (346)
T PRK07589 130 RTMALIGNGAQ-SEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKTNAT 208 (346)
T ss_pred cEEEEECCcHH-HHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCCCc
Confidence 56677776553 5544433322 22 256665543 135778999999999999854 4
Q ss_pred cCCCCccCCCeEEEEeeccC
Q 022295 223 MIKGSWIKPGAAVIDVGTNA 242 (299)
Q Consensus 223 ~i~~~~vk~gavVIDvg~~~ 242 (299)
+++.+|++||+.|.=+|.+.
T Consensus 209 vl~~~~lkpG~hV~aIGs~~ 228 (346)
T PRK07589 209 ILTDDMVEPGMHINAVGGDC 228 (346)
T ss_pred eecHHHcCCCcEEEecCCCC
Confidence 68999999999999999643
No 135
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.06 E-value=0.0012 Score=62.62 Aligned_cols=76 Identities=11% Similarity=0.155 Sum_probs=57.1
Q ss_pred CCcEEEEEcCCccchHHHHHHHhhC-C-CeEEEEcCCC---------------------CChhhhccCCcEEEEecCCCC
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLLKA-D-ATVTIVHSHT---------------------TDPESIVREADIVIAAAGQAM 222 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~~~-g-atVtv~~~~t---------------------~~l~~~~~~ADIVIsa~g~p~ 222 (299)
.-+++.|||.|.- |+.-+..+..- + -+|.+.+++. .+.++.+++||||+++|++..
T Consensus 116 da~~l~iiGaG~Q-A~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~ 194 (301)
T PRK06407 116 NVENFTIIGSGFQ-AETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT 194 (301)
T ss_pred CCcEEEEECCcHH-HHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC
Confidence 4578888887765 77666655532 3 3677765441 356788999999999999765
Q ss_pred -cCCCCccCCCeEEEEeeccC
Q 022295 223 -MIKGSWIKPGAAVIDVGTNA 242 (299)
Q Consensus 223 -~i~~~~vk~gavVIDvg~~~ 242 (299)
+++.+|++||+.|.=+|.+.
T Consensus 195 P~~~~~~l~pg~hV~aiGs~~ 215 (301)
T PRK06407 195 PIFNRKYLGDEYHVNLAGSNY 215 (301)
T ss_pred cEecHHHcCCCceEEecCCCC
Confidence 58999999999999999753
No 136
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=97.06 E-value=0.001 Score=63.81 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=56.3
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccCCcEEEEecCCCC---cCCC-
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVREADIVIAAAGQAM---MIKG- 226 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~ADIVIsa~g~p~---~i~~- 226 (299)
.|+||+|.|||.|.+ |+++|..|...|..|++.++.. .++.+.+++||+|+..++.+. ++..
T Consensus 13 ~LkgKtVGIIG~GsI-G~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd~~t~~V~~~e 91 (335)
T PRK13403 13 LLQGKTVAVIGYGSQ-GHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPDEQQAHVYKAE 91 (335)
T ss_pred hhCcCEEEEEeEcHH-HHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCChHHHHHHHHH
Confidence 478999999999886 9999999999999999986532 157788999999999887533 3432
Q ss_pred --CccCCCeEE
Q 022295 227 --SWIKPGAAV 235 (299)
Q Consensus 227 --~~vk~gavV 235 (299)
..+++|+++
T Consensus 92 il~~MK~GaiL 102 (335)
T PRK13403 92 VEENLREGQML 102 (335)
T ss_pred HHhcCCCCCEE
Confidence 446888755
No 137
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=97.05 E-value=0.0013 Score=61.42 Aligned_cols=74 Identities=23% Similarity=0.362 Sum_probs=57.5
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCCCC----cC-C---
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQAM----MI-K--- 225 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~p~----~i-~--- 225 (299)
++|.|||.|.+ |.+++..|.+.|..|++++++. .+..+.++++|+||.+++.+. .+ .
T Consensus 3 ~~IgviG~G~m-G~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~ 81 (296)
T PRK11559 3 MKVGFIGLGIM-GKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENG 81 (296)
T ss_pred ceEEEEccCHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcch
Confidence 47999998875 9999999999999999987652 356677899999999998433 22 1
Q ss_pred -CCccCCCeEEEEeeccC
Q 022295 226 -GSWIKPGAAVIDVGTNA 242 (299)
Q Consensus 226 -~~~vk~gavVIDvg~~~ 242 (299)
...+++|++++|++...
T Consensus 82 ~~~~~~~g~iiid~st~~ 99 (296)
T PRK11559 82 IIEGAKPGTVVIDMSSIA 99 (296)
T ss_pred HhhcCCCCcEEEECCCCC
Confidence 13468899999997653
No 138
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.04 E-value=0.00095 Score=62.77 Aligned_cols=74 Identities=20% Similarity=0.290 Sum_probs=58.0
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC--------------CCChhhhccCCcEEEEecCCCC----cCC-C--
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH--------------TTDPESIVREADIVIAAAGQAM----MIK-G-- 226 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~--------------t~~l~~~~~~ADIVIsa~g~p~----~i~-~-- 226 (299)
++|.|||.|.+ |.+++..|++.|..|++++++ +.+..+.++++|+||.+++.+. .+. .
T Consensus 2 ~~Ig~IGlG~m-G~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~ 80 (296)
T PRK15461 2 AAIAFIGLGQM-GSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENG 80 (296)
T ss_pred CeEEEEeeCHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCccc
Confidence 37999998886 999999999999999999865 2355677899999999998653 222 1
Q ss_pred --CccCCCeEEEEeeccC
Q 022295 227 --SWIKPGAAVIDVGTNA 242 (299)
Q Consensus 227 --~~vk~gavVIDvg~~~ 242 (299)
..+++|.++||.+...
T Consensus 81 i~~~l~~g~lvid~sT~~ 98 (296)
T PRK15461 81 VCEGLSRDALVIDMSTIH 98 (296)
T ss_pred HhhcCCCCCEEEECCCCC
Confidence 1357899999998754
No 139
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=97.04 E-value=0.0014 Score=61.64 Aligned_cols=73 Identities=27% Similarity=0.335 Sum_probs=57.4
Q ss_pred CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC------------------CCh-hhhccCCcEEEEecCCCC---cC
Q 022295 167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT------------------TDP-ESIVREADIVIAAAGQAM---MI 224 (299)
Q Consensus 167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t------------------~~l-~~~~~~ADIVIsa~g~p~---~i 224 (299)
-++|+|+|.|.+ |+.++..|..+|..|.++.+.. .+. .+....||+||.|++... ++
T Consensus 3 ~~~v~IvG~Gli-G~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLM-GGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEATEEVL 81 (279)
T ss_pred CcEEEEECCchH-HHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHHHHHHH
Confidence 368999998886 9999999999999888886542 122 566778999999998543 22
Q ss_pred ---CCCccCCCeEEEEeecc
Q 022295 225 ---KGSWIKPGAAVIDVGTN 241 (299)
Q Consensus 225 ---~~~~vk~gavVIDvg~~ 241 (299)
.+ .+++|++|.|+|..
T Consensus 82 ~~l~~-~l~~g~iv~Dv~S~ 100 (279)
T COG0287 82 KELAP-HLKKGAIVTDVGSV 100 (279)
T ss_pred HHhcc-cCCCCCEEEecccc
Confidence 23 78999999999974
No 140
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=97.01 E-value=0.01 Score=57.20 Aligned_cols=148 Identities=14% Similarity=0.056 Sum_probs=100.4
Q ss_pred CcccHHHHHHHHHHHHHcCCceeeecCCCCC---CHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccC
Q 022295 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQV---SEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDV 126 (299)
Q Consensus 50 d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~---~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDV 126 (299)
.|+...-. +=..++.++|.++.++.-. ++ ..|.+.+.++-|+.- +|+|.+-.|- |-...++.+.. .
T Consensus 54 epSTRTR~-SFe~A~~~LGg~~i~l~~~-~s~~~kgEsl~Dtarvls~y--~D~Iv~R~~~--~~~~~~~a~~~----~- 122 (336)
T PRK03515 54 KDSTRTRC-SFEVAAYDQGARVTYLGPS-GSQIGHKESIKDTARVLGRM--YDGIQYRGYG--QEIVETLAEYA----G- 122 (336)
T ss_pred CCChhHHH-HHHHHHHHcCCcEEEeCCc-cccCCCCCCHHHHHHHHHHh--CcEEEEEeCC--hHHHHHHHHhC----C-
Confidence 34444443 4577889999998886421 11 125677777777764 8899998763 22223332222 2
Q ss_pred CCCCcccccccccCCCCCccccCCHHH-HHHHHHhhCC-CcCCcEEEEEcCC-ccchHHHHHHHhhCCCeEEEEcCC---
Q 022295 127 DGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSGV-TIKGKRAVVVGRS-NIVGLPVSLLLLKADATVTIVHSH--- 200 (299)
Q Consensus 127 Dg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~-~l~gk~vvViG~s-~~vG~pla~lL~~~gatVtv~~~~--- 200 (299)
+-.+|.+ .+...||=+.+ ++.+.++.|. +++|++++.+|-. ..|.+.++.++...|+++++|+-.
T Consensus 123 --vPVINa~-------~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~ 193 (336)
T PRK03515 123 --VPVWNGL-------TNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACW 193 (336)
T ss_pred --CCEEECC-------CCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhc
Confidence 3445632 23568998888 5666666653 7999999999974 347999999999999999999632
Q ss_pred ----------------------CCChhhhccCCcEEEEe
Q 022295 201 ----------------------TTDPESIVREADIVIAA 217 (299)
Q Consensus 201 ----------------------t~~l~~~~~~ADIVIsa 217 (299)
+.++.+.+++||+|.+-
T Consensus 194 ~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 194 PEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred CcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 24667889999999974
No 141
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=97.00 E-value=0.016 Score=55.89 Aligned_cols=149 Identities=16% Similarity=0.118 Sum_probs=100.3
Q ss_pred CcccHHHHHHHHHHHHHcCCceeeecCCCC--CCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCC
Q 022295 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQ--VSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVD 127 (299)
Q Consensus 50 d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~--~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVD 127 (299)
.|+...-. +=..++.++|.++..+.-... ...|.+.+.++-|+.- +|+|.+-.|-. -....+.+.. +
T Consensus 55 epSTRTR~-SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~y--~D~iv~R~~~~--~~~~~~a~~~----~-- 123 (334)
T PRK01713 55 KTSTRTRC-AFEVAAYDQGAQVTYIDPNSSQIGHKESMKDTARVLGRM--YDAIEYRGFKQ--SIVNELAEYA----G-- 123 (334)
T ss_pred CCCchHHH-HHHHHHHHcCCeEEEcCCccccCCCCcCHHHHHHHHHHh--CCEEEEEcCch--HHHHHHHHhC----C--
Confidence 34444444 447788999999877632110 1125677777777763 88999986632 2112222222 2
Q ss_pred CCCcccccccccCCCCCccccCCHHH-HHHHHHhhCCCcCCcEEEEEcCC-ccchHHHHHHHhhCCCeEEEEcCC-----
Q 022295 128 GFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSGVTIKGKRAVVVGRS-NIVGLPVSLLLLKADATVTIVHSH----- 200 (299)
Q Consensus 128 g~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~~l~gk~vvViG~s-~~vG~pla~lL~~~gatVtv~~~~----- 200 (299)
+-.+|.+ .+...||=+.+ ++.+.++.|.+++|+++++||-+ ..|.+.++.++...|++|++|.-.
T Consensus 124 -vPVINa~-------~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~ 195 (334)
T PRK01713 124 -VPVFNGL-------TDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPE 195 (334)
T ss_pred -CCEEECC-------CCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCC
Confidence 3445642 23468998888 56666666667999999999985 447999999999999999999632
Q ss_pred --------------------CCChhhhccCCcEEEEe
Q 022295 201 --------------------TTDPESIVREADIVIAA 217 (299)
Q Consensus 201 --------------------t~~l~~~~~~ADIVIsa 217 (299)
+.++.+.+++||+|.+-
T Consensus 196 ~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~ 232 (334)
T PRK01713 196 ASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD 232 (334)
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 24667889999999973
No 142
>PLN02256 arogenate dehydrogenase
Probab=96.98 E-value=0.0026 Score=60.39 Aligned_cols=76 Identities=18% Similarity=0.279 Sum_probs=57.1
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhc-cCCcEEEEecCCCC---cCC-
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIV-READIVIAAAGQAM---MIK- 225 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~-~~ADIVIsa~g~p~---~i~- 225 (299)
+-+++++.|||.|.+ |..++..|.+.|.+|+++++.. .++.+.+ .++|+||.+++... ++.
T Consensus 33 ~~~~~kI~IIG~G~m-G~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~~ 111 (304)
T PLN02256 33 KSRKLKIGIVGFGNF-GQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLRS 111 (304)
T ss_pred cCCCCEEEEEeeCHH-HHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHHh
Confidence 447789999998875 9999999999888888887553 1333444 46999999998432 222
Q ss_pred --CCccCCCeEEEEeec
Q 022295 226 --GSWIKPGAAVIDVGT 240 (299)
Q Consensus 226 --~~~vk~gavVIDvg~ 240 (299)
...++++++|+|++.
T Consensus 112 l~~~~l~~~~iviDv~S 128 (304)
T PLN02256 112 LPLQRLKRSTLFVDVLS 128 (304)
T ss_pred hhhhccCCCCEEEecCC
Confidence 234688999999997
No 143
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=96.97 E-value=0.049 Score=52.51 Aligned_cols=186 Identities=13% Similarity=0.088 Sum_probs=116.1
Q ss_pred eeccHHHHHHHHHHHHHHHHHHHhcC--CC-----C-cEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCC--
Q 022295 11 IIDGKAVAQTIRSEIAEEVRLLSEKY--GK-----V-PGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQV-- 80 (299)
Q Consensus 11 il~gk~~a~~i~~~~~~~v~~l~~~~--~~-----~-P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~-- 80 (299)
+|+-..+.++=.+.|-+....+++.. +. . -.++.+ +- .|+...-. +=..++.++|.++.++.- .+.
T Consensus 9 ~l~~~dls~~ei~~ll~~A~~~k~~~~~~~~~~~L~gk~l~~l-F~-epSTRTR~-SFE~A~~~LGg~~i~l~~-~~s~~ 84 (334)
T PRK12562 9 FLKLLDFTPAELNSLLQLAAKLKADKKNGKEVARLTGKNIALI-FE-KDSTRTRC-SFEVAAYDQGARVTYLGP-SGSQI 84 (334)
T ss_pred cCchHhCCHHHHHHHHHHHHHHHhhhhcCCccccCCCCEEEEE-EC-CCCchhHH-HHHHHHHHcCCeEEEeCC-ccccC
Confidence 45555555544444444444454321 11 1 133333 32 34444333 457889999999987752 221
Q ss_pred -CHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHH
Q 022295 81 -SEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELL 158 (299)
Q Consensus 81 -~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll 158 (299)
..|-+.+.++-|+.- +|+|.+-.|-..- ...+.+.. + +-.+|.+ .+...||=+.+ ++.+.
T Consensus 85 ~kgEsl~Dtarvls~y--~D~iviR~~~~~~--~~~~a~~~----~---vPVINa~-------~~~~HPtQaLaDl~Ti~ 146 (334)
T PRK12562 85 GHKESIKDTARVLGRM--YDGIQYRGHGQEV--VETLAEYA----G---VPVWNGL-------TNEFHPTQLLADLLTMQ 146 (334)
T ss_pred CCCcCHHHHHHHHHHh--CCEEEEECCchHH--HHHHHHhC----C---CCEEECC-------CCCCChHHHHHHHHHHH
Confidence 125677777777764 8899998763321 12332222 2 3455653 23468998888 55555
Q ss_pred HhhCC-CcCCcEEEEEcCC-ccchHHHHHHHhhCCCeEEEEcCC-------------------------CCChhhhccCC
Q 022295 159 KRSGV-TIKGKRAVVVGRS-NIVGLPVSLLLLKADATVTIVHSH-------------------------TTDPESIVREA 211 (299)
Q Consensus 159 ~~~~~-~l~gk~vvViG~s-~~vG~pla~lL~~~gatVtv~~~~-------------------------t~~l~~~~~~A 211 (299)
++.|. .++|++++++|-. ..|.+.++.++...|+.|++|+-. +.++.+.++.|
T Consensus 147 e~~g~~~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~a 226 (334)
T PRK12562 147 EHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGA 226 (334)
T ss_pred HHhCCCCcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 66654 6999999999974 347999999999999999999732 24667889999
Q ss_pred cEEEEec
Q 022295 212 DIVIAAA 218 (299)
Q Consensus 212 DIVIsa~ 218 (299)
|+|.+-.
T Consensus 227 Dvvyt~~ 233 (334)
T PRK12562 227 DFIYTDV 233 (334)
T ss_pred CEEEEcC
Confidence 9999753
No 144
>PRK06046 alanine dehydrogenase; Validated
Probab=96.96 E-value=0.0037 Score=59.73 Aligned_cols=74 Identities=23% Similarity=0.389 Sum_probs=57.3
Q ss_pred CCcEEEEEcCCccchHHHHHHHhh-CCC-eEEEEcCCC---------------------CChhhhccCCcEEEEecCCCC
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLLK-ADA-TVTIVHSHT---------------------TDPESIVREADIVIAAAGQAM 222 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~~-~ga-tVtv~~~~t---------------------~~l~~~~~~ADIVIsa~g~p~ 222 (299)
.-+++.|||.|.. |+..+..|.. .+. .|.+++++. .++++.+. +|+|+++|+...
T Consensus 128 ~~~~vgiiG~G~q-a~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~ 205 (326)
T PRK06046 128 DSKVVGIIGAGNQ-ARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK 205 (326)
T ss_pred CCCEEEEECCcHH-HHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC
Confidence 3579999999886 9888877763 344 688887542 24556665 999999999644
Q ss_pred -cCCCCccCCCeEEEEeecc
Q 022295 223 -MIKGSWIKPGAAVIDVGTN 241 (299)
Q Consensus 223 -~i~~~~vk~gavVIDvg~~ 241 (299)
+++.+|++||+.|.-+|.+
T Consensus 206 P~~~~~~l~~g~hV~~iGs~ 225 (326)
T PRK06046 206 PVVKAEWIKEGTHINAIGAD 225 (326)
T ss_pred cEecHHHcCCCCEEEecCCC
Confidence 6899999999999999965
No 145
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=96.96 E-value=0.001 Score=61.75 Aligned_cols=92 Identities=21% Similarity=0.328 Sum_probs=71.1
Q ss_pred CHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhC----CC-------eEEEEcCC------------------
Q 022295 150 TPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKA----DA-------TVTIVHSH------------------ 200 (299)
Q Consensus 150 T~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~----ga-------tVtv~~~~------------------ 200 (299)
|-.|++..++-.+.+|+..+++++|+|.+ |-.++.+|... |. .+++++++
T Consensus 8 ~lAgll~Al~~~g~~l~d~riv~~GAGsA-g~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a 86 (255)
T PF03949_consen 8 VLAGLLNALRVTGKKLSDQRIVFFGAGSA-GIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFA 86 (255)
T ss_dssp HHHHHHHHHHHHTS-GGG-EEEEEB-SHH-HHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHcEEEEeCCChh-HHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhh
Confidence 45789999999999999999999999987 99998887765 76 38999865
Q ss_pred --------CCChhhhccCC--cEEEEecCCCCcCCCCccCC------CeEEEEeeccCC
Q 022295 201 --------TTDPESIVREA--DIVIAAAGQAMMIKGSWIKP------GAAVIDVGTNAV 243 (299)
Q Consensus 201 --------t~~l~~~~~~A--DIVIsa~g~p~~i~~~~vk~------gavVIDvg~~~~ 243 (299)
..+|.+.++.+ |++|..+|.|+.+++|+|+. .-+|+=++ ||.
T Consensus 87 ~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LS-NPt 144 (255)
T PF03949_consen 87 RKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLS-NPT 144 (255)
T ss_dssp BSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-S-SSC
T ss_pred ccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECC-CCC
Confidence 12788999999 99999999999999999853 45676665 443
No 146
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=96.96 E-value=0.02 Score=54.45 Aligned_cols=151 Identities=17% Similarity=0.258 Sum_probs=99.0
Q ss_pred CcccHHHHHHHHHHHHHcCCceeeecCCCC-C-CHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCC
Q 022295 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQ-V-SEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVD 127 (299)
Q Consensus 50 d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~-~-~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVD 127 (299)
.|+...-. +=..++.++|.++..+.-.+. . ..|-+.+.++-|+.= ++|+|.+-.|-. -.-.++.+. -
T Consensus 54 ~pSTRTR~-SFe~A~~~LGg~~i~l~~~~~~~~kgEs~~Dta~vls~y-~~D~iv~R~~~~--~~~~~~a~~-------~ 122 (305)
T PRK00856 54 EPSTRTRL-SFELAAKRLGADVINFSASTSSVSKGETLADTIRTLSAM-GADAIVIRHPQS--GAARLLAES-------S 122 (305)
T ss_pred cCCcchHH-HHHHHHHHcCCcEEEeCCCcccCCCCcCHHHHHHHHHhc-CCCEEEEeCCCh--HHHHHHHHH-------C
Confidence 34444443 557889999999876643210 1 123455555555541 378899886633 211222222 1
Q ss_pred CCCcccccccccCCCCCccccCCHHH-HHHHHHhhCCCcCCcEEEEEcCC--ccchHHHHHHHhhCCCeEEEEcCC----
Q 022295 128 GFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSGVTIKGKRAVVVGRS--NIVGLPVSLLLLKADATVTIVHSH---- 200 (299)
Q Consensus 128 g~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~~l~gk~vvViG~s--~~vG~pla~lL~~~gatVtv~~~~---- 200 (299)
.+-.+|.|- .+...||=+.+ ++.+.++.| +++|++|+++|-+ +.|.+.++.++...|+++++|+-.
T Consensus 123 ~vPVINa~~------g~~~HPtQ~LaDl~Ti~e~~G-~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~ 195 (305)
T PRK00856 123 DVPVINAGD------GSHQHPTQALLDLLTIREEFG-RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLP 195 (305)
T ss_pred CCCEEECCC------CCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCc
Confidence 234556431 13568998888 666666665 6999999999975 456999999999999999999732
Q ss_pred --------CCChhhhccCCcEEEEec
Q 022295 201 --------TTDPESIVREADIVIAAA 218 (299)
Q Consensus 201 --------t~~l~~~~~~ADIVIsa~ 218 (299)
+.++.++++.||+|.+-.
T Consensus 196 ~~~~~~~~~~d~~ea~~~aDvvyt~~ 221 (305)
T PRK00856 196 EGMPEYGVHTDLDEVIEDADVVMMLR 221 (305)
T ss_pred ccccceEEECCHHHHhCCCCEEEECC
Confidence 356778999999999854
No 147
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.95 E-value=0.00061 Score=52.71 Aligned_cols=70 Identities=27% Similarity=0.409 Sum_probs=51.8
Q ss_pred EEEEEcCCccchHHHHHHHhhCC---CeEEEE-cCCC---------------C-ChhhhccCCcEEEEecCCCCc--CCC
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKAD---ATVTIV-HSHT---------------T-DPESIVREADIVIAAAGQAMM--IKG 226 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~g---atVtv~-~~~t---------------~-~l~~~~~~ADIVIsa~g~p~~--i~~ 226 (299)
++.+||.|++ |..++.-|.+.| ..|+++ +++. . +..+.+++||+||.++.-..+ +-.
T Consensus 1 kI~iIG~G~m-g~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~~~v~~ 79 (96)
T PF03807_consen 1 KIGIIGAGNM-GSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQLPEVLS 79 (96)
T ss_dssp EEEEESTSHH-HHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHH
T ss_pred CEEEECCCHH-HHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHHHHHHH
Confidence 5789999886 999999999999 899965 6541 2 566888899999999875543 211
Q ss_pred --CccCCCeEEEEee
Q 022295 227 --SWIKPGAAVIDVG 239 (299)
Q Consensus 227 --~~vk~gavVIDvg 239 (299)
....++.++||+.
T Consensus 80 ~i~~~~~~~~vis~~ 94 (96)
T PF03807_consen 80 EIPHLLKGKLVISIA 94 (96)
T ss_dssp HHHHHHTTSEEEEES
T ss_pred HHhhccCCCEEEEeC
Confidence 3467788999874
No 148
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=96.90 E-value=0.089 Score=50.82 Aligned_cols=186 Identities=17% Similarity=0.170 Sum_probs=118.2
Q ss_pred eeeccHHHHHHHHHHHHHHHHHHHhcC--C-----CCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCC-
Q 022295 10 TIIDGKAVAQTIRSEIAEEVRLLSEKY--G-----KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS- 81 (299)
Q Consensus 10 ~il~gk~~a~~i~~~~~~~v~~l~~~~--~-----~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~- 81 (299)
.+|+-+.+.++=.+.|-+....+++.. + .+.+....++= .|+...-. +=..++.++|-++.++.- .+.+
T Consensus 5 ~ll~i~dls~~ei~~ll~~A~~~k~~~~~~~~~~~L~gk~v~~lF~-epSTRTR~-SFe~A~~~LGg~~i~l~~-~~ss~ 81 (338)
T PRK02255 5 DFIDTNDFTKEEILDIIELGLKLKEAIKNGYYPQLLKNKTLGMIFE-QSSTRTRV-SFETAMTQLGGHAQYLAP-GQIQL 81 (338)
T ss_pred CCcchhhCCHHHHHHHHHHHHHHHHHhhcCCccccCCCCEEEEEeC-CCCcchHH-HHHHHHHHcCCeEEEeCc-ccccC
Confidence 355655665554445544444554311 1 11233333333 45555444 457889999999887753 2221
Q ss_pred --HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHH
Q 022295 82 --EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELL 158 (299)
Q Consensus 82 --~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll 158 (299)
.|.+.+.++-|+.- +|+|.+-.| .|-....+.+. -.+-.+|.+ .+...||=+.+ ++.+.
T Consensus 82 ~kgEsl~Dtarvls~y--~D~iviR~~--~~~~~~~~a~~-------~~vPVINa~-------~~~~HPtQaLaDl~Ti~ 143 (338)
T PRK02255 82 GGHESLEDTARVLSRL--VDIIMARVD--RHQTVVELAKY-------ATVPVINGM-------SDYNHPTQELGDLFTMI 143 (338)
T ss_pred CCCcCHHHHHHHHHHh--CcEEEEecC--ChHHHHHHHHh-------CCCCEEECC-------CCCCChHHHHHHHHHHH
Confidence 25577777777764 789988765 33222222222 123455632 23468998888 55555
Q ss_pred HhhC--CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------------------CCChhhhccCC
Q 022295 159 KRSG--VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------------------TTDPESIVREA 211 (299)
Q Consensus 159 ~~~~--~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------------------t~~l~~~~~~A 211 (299)
++.| -+++|++|+++|-...|.+.++.+|...|++|++|+-. +.++.+.++.|
T Consensus 144 e~~g~g~~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~a 223 (338)
T PRK02255 144 EHLPEGKKLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDA 223 (338)
T ss_pred HHhCCCCCCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCC
Confidence 6664 36999999999997778999999999999999999632 24667899999
Q ss_pred cEEEE
Q 022295 212 DIVIA 216 (299)
Q Consensus 212 DIVIs 216 (299)
|+|.+
T Consensus 224 Dvvy~ 228 (338)
T PRK02255 224 DFVYT 228 (338)
T ss_pred CEEEE
Confidence 99998
No 149
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.86 E-value=0.0023 Score=57.80 Aligned_cols=114 Identities=26% Similarity=0.349 Sum_probs=70.6
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-C-----------------ChhhhccCCcEEEEecCCCCc-
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-T-----------------DPESIVREADIVIAAAGQAMM- 223 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-~-----------------~l~~~~~~ADIVIsa~g~p~~- 223 (299)
++++||+|+|||.|. ||.-=+.+|++.||+|++..-.. + -..+.+..+++||.||+.+.+
T Consensus 8 ~~l~~k~VlvvGgG~-va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt~d~~ln 86 (210)
T COG1648 8 LDLEGKKVLVVGGGS-VALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLDDAFLVIAATDDEELN 86 (210)
T ss_pred EEcCCCEEEEECCCH-HHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhhcCceEEEEeCCCHHHH
Confidence 478999999999766 59888999999999999885332 1 112456669999999998653
Q ss_pred --CCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhh---ceeccCCCCccHHHHHHHHHHHHH
Q 022295 224 --IKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVA---GCVTPVPGGVGPMTVAMLLRNTLD 291 (299)
Q Consensus 224 --i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a---~~iTPVPGGVGp~T~a~L~~n~v~ 291 (299)
|-... ++-.+.+++.-.+ .+ +|+-|.+.-++. -+|+ -||-+|+.+.+|.+.+-.
T Consensus 87 ~~i~~~a-~~~~i~vNv~D~p----------~~-~~f~~Pa~~~r~~l~iaIs--T~G~sP~la~~ir~~Ie~ 145 (210)
T COG1648 87 ERIAKAA-RERRILVNVVDDP----------EL-CDFIFPAIVDRGPLQIAIS--TGGKSPVLARLLREKIEA 145 (210)
T ss_pred HHHHHHH-HHhCCceeccCCc----------cc-CceecceeeccCCeEEEEE--CCCCChHHHHHHHHHHHH
Confidence 21111 1112333333222 11 445455533332 2233 378888888888776543
No 150
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=96.84 E-value=0.014 Score=56.16 Aligned_cols=185 Identities=13% Similarity=-0.005 Sum_probs=115.0
Q ss_pred eeccHHHHHHHHHHHHHHHHHHHhcC--C-----CCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCC--
Q 022295 11 IIDGKAVAQTIRSEIAEEVRLLSEKY--G-----KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS-- 81 (299)
Q Consensus 11 il~gk~~a~~i~~~~~~~v~~l~~~~--~-----~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~-- 81 (299)
+|+-+.+.++=.+.|-+....+++.. + -+.+....++= .|+..... +=..++.++|.++.++. ...+
T Consensus 9 ~ls~~dls~~ei~~ll~~A~~~k~~~~~~~~~~~L~gk~l~~lF~-epSTRTR~-SFe~A~~~LGg~~i~l~--~~~ss~ 84 (332)
T PRK04284 9 FLTLLDFTPKEIEYLLDLSEDLKRAKYAGIEVQKLKGKNIALIFE-KDSTRTRC-AFEVAAYDQGAHVTYLG--PTGSQM 84 (332)
T ss_pred ccchHhCCHHHHHHHHHHHHHHHHHhhcCCcccCCCCCEEEEEec-CCChhHHH-HHHHHHHHcCCeEEEcC--CccccC
Confidence 56655565543344444444444321 1 11123333343 34455544 45788999999988653 2222
Q ss_pred --HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHH
Q 022295 82 --EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLK 159 (299)
Q Consensus 82 --~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~ 159 (299)
-|.+.+.++-|+.- +|+|.+-.|-. -....+.+.. . +-.+|.| .+...||=+.+=+--+.
T Consensus 85 ~kgEsl~DTarvls~y--~D~iviR~~~~--~~~~~~a~~s----~---vPVINa~-------~~~~HPtQaL~Dl~Ti~ 146 (332)
T PRK04284 85 GKKESTKDTARVLGGM--YDGIEYRGFSQ--RTVETLAEYS----G---VPVWNGL-------TDEDHPTQVLADFLTAK 146 (332)
T ss_pred CCCcCHHHHHHHHHHh--CCEEEEecCch--HHHHHHHHhC----C---CCEEECC-------CCCCChHHHHHHHHHHH
Confidence 25677777777764 88999986632 2223332222 2 3455632 23468998888444444
Q ss_pred hh-CCCcCCcEEEEEcCC-ccchHHHHHHHhhCCCeEEEEcCC-------------------------CCChhhhccCCc
Q 022295 160 RS-GVTIKGKRAVVVGRS-NIVGLPVSLLLLKADATVTIVHSH-------------------------TTDPESIVREAD 212 (299)
Q Consensus 160 ~~-~~~l~gk~vvViG~s-~~vG~pla~lL~~~gatVtv~~~~-------------------------t~~l~~~~~~AD 212 (299)
++ ..+++|++|+++|-+ ..|.+.++.+|...|++|++|+-. +.++.+.+++||
T Consensus 147 e~~~g~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aD 226 (332)
T PRK04284 147 EHLKKPYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSD 226 (332)
T ss_pred HHhcCCcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCC
Confidence 44 347999999999974 347999999999999999999733 246678899999
Q ss_pred EEEEe
Q 022295 213 IVIAA 217 (299)
Q Consensus 213 IVIsa 217 (299)
+|.+-
T Consensus 227 vvy~~ 231 (332)
T PRK04284 227 VIYTD 231 (332)
T ss_pred EEEEC
Confidence 99975
No 151
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=96.84 E-value=0.13 Score=49.00 Aligned_cols=147 Identities=16% Similarity=0.182 Sum_probs=99.6
Q ss_pred CcccHHHHHHHHHHHHHcCCceeeecCCCCCC---HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccC
Q 022295 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS---EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDV 126 (299)
Q Consensus 50 d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~---~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDV 126 (299)
.|+..... +=..++.++|.++.++. +.+.+ -|.+.+.++-|+.- +|+|.+-.|-. -....+.+. -+
T Consensus 47 epSTRTR~-SFE~A~~~LGg~~i~l~-~~~ss~~kgEsl~Dt~~vls~y--~D~iviR~~~~--~~~~~~a~~----~~- 115 (302)
T PRK14805 47 KPSLRTRV-SFDIGINKLGGHCLYLD-QQNGALGKRESVADFAANLSCW--ADAIVARVFSH--STIEQLAEH----GS- 115 (302)
T ss_pred CCCchHHH-HHHHHHHHcCCcEEECC-CCcCcCCCCcCHHHHHHHHHHh--CCEEEEeCCCh--hHHHHHHHh----CC-
Confidence 45555555 45789999999988765 22221 25577777777664 88999987633 222333222 22
Q ss_pred CCCCcccccccccCCCCCccccCCHHH-HHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-----
Q 022295 127 DGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH----- 200 (299)
Q Consensus 127 Dg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~----- 200 (299)
+-.+|.| .+...||=+.+ ++.+.++.| +++|++|+++|-+..|.+.++.+|...|++|++|+-.
T Consensus 116 --vPVINa~-------~~~~HPtQaL~Dl~Ti~e~~g-~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~ 185 (302)
T PRK14805 116 --VPVINAL-------CDLYHPCQALADFLTLAEQFG-DVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPD 185 (302)
T ss_pred --CCEEECC-------CCCCChHHHHHHHHHHHHHhC-CcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCC
Confidence 3556653 23468998888 444444554 7999999999998888999999999999999999732
Q ss_pred --------------------CCChhhhccCCcEEEEec
Q 022295 201 --------------------TTDPESIVREADIVIAAA 218 (299)
Q Consensus 201 --------------------t~~l~~~~~~ADIVIsa~ 218 (299)
+.++ +.++.||+|.+-+
T Consensus 186 ~~~~~~a~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~ 222 (302)
T PRK14805 186 GQIVAEAQELAAKSGGKLVLTSDI-EAIEGHDAIYTDT 222 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCH-HHHCCCCEEEeec
Confidence 1232 4688899988733
No 152
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=96.83 E-value=0.026 Score=54.38 Aligned_cols=187 Identities=16% Similarity=0.102 Sum_probs=116.5
Q ss_pred eeeccHHHHHHHHHHHHHHHHHHHhcC--C-----CCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCC--
Q 022295 10 TIIDGKAVAQTIRSEIAEEVRLLSEKY--G-----KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQV-- 80 (299)
Q Consensus 10 ~il~gk~~a~~i~~~~~~~v~~l~~~~--~-----~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~-- 80 (299)
.+|+-..+.++=.+.|-+...++++.. + ..-+....++= .|+...-. +=..++.++|.++.+..- .+.
T Consensus 9 ~~l~~~dls~~ei~~ll~~A~~~k~~~~~~~~~~~L~gk~v~~lF~-epSTRTR~-SFe~A~~~LGg~~i~l~~-~~ss~ 85 (331)
T PRK02102 9 SFLKLLDFTPEEIEYLIDLSIELKAAKKAGIEHQYLEGKNIALIFE-KTSTRTRC-AFEVAAIDLGAHVTYLGP-NDSQL 85 (331)
T ss_pred CccchHHCCHHHHHHHHHHHHHHHHHhhcCCCcccCCCCEEEEEeC-CCChhHHH-HHHHHHHHcCCCEEEcCc-ccccC
Confidence 356666666655555555555554321 1 11233333333 33333333 457889999999885532 221
Q ss_pred -CHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHH
Q 022295 81 -SEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLK 159 (299)
Q Consensus 81 -~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~ 159 (299)
..|.+.+.++-|..- +|+|.+-.|-..-+ +.+.+. -+| -.+|.| .+...||=+.+=+-.++
T Consensus 86 ~kgEsl~Dt~rvls~y--~D~iviR~~~~~~~--~~~a~~----~~v---PVINa~-------~~~~HPtQaLaDl~Ti~ 147 (331)
T PRK02102 86 GKKESIEDTARVLGRM--YDGIEYRGFKQEIV--EELAKY----SGV---PVWNGL-------TDEWHPTQMLADFMTMK 147 (331)
T ss_pred CCCcCHHHHHHHHhhc--CCEEEEECCchHHH--HHHHHh----CCC---CEEECC-------CCCCChHHHHHHHHHHH
Confidence 125677777777764 88999987633211 233222 222 345643 23468998888444444
Q ss_pred hhCCCcCCcEEEEEcCC-ccchHHHHHHHhhCCCeEEEEcCC-------------------------CCChhhhccCCcE
Q 022295 160 RSGVTIKGKRAVVVGRS-NIVGLPVSLLLLKADATVTIVHSH-------------------------TTDPESIVREADI 213 (299)
Q Consensus 160 ~~~~~l~gk~vvViG~s-~~vG~pla~lL~~~gatVtv~~~~-------------------------t~~l~~~~~~ADI 213 (299)
++-..++|+++++||-+ ..|.+.++.++...|++|++|+-. +.++.+.++.||+
T Consensus 148 e~~g~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDv 227 (331)
T PRK02102 148 EHFGPLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADV 227 (331)
T ss_pred HHhCCCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCE
Confidence 44457999999999985 347999999999999999999632 2456788999999
Q ss_pred EEEe
Q 022295 214 VIAA 217 (299)
Q Consensus 214 VIsa 217 (299)
|.+-
T Consensus 228 vyt~ 231 (331)
T PRK02102 228 IYTD 231 (331)
T ss_pred EEEc
Confidence 9974
No 153
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.80 E-value=0.0088 Score=59.68 Aligned_cols=53 Identities=26% Similarity=0.315 Sum_probs=44.2
Q ss_pred ccccCCHHHHHHHH----HhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEE-Ec
Q 022295 145 LFLPCTPKGCLELL----KRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTI-VH 198 (299)
Q Consensus 145 ~~~PcT~~av~~ll----~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv-~~ 198 (299)
+-.+.|++|++..+ ++.|.+|+||+|+|.|.|+ ||..+|..|.+.||+|+. ++
T Consensus 202 ~r~~aTg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGN-VG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 202 IRPEATGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGN-VAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred CCCcccHHHHHHHHHHHHHhcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEEC
Confidence 34578999977655 4568999999999999877 699999999999999886 44
No 154
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=96.80 E-value=0.002 Score=60.69 Aligned_cols=73 Identities=25% Similarity=0.371 Sum_probs=55.9
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCC----------------CChhhhccCCcEEEEecCCCC---cCC-
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHT----------------TDPESIVREADIVIAAAGQAM---MIK- 225 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t----------------~~l~~~~~~ADIVIsa~g~p~---~i~- 225 (299)
++|.|||.|.+ |..++..|...|. .|++++++. .+..+.+++||+||.+++... ++.
T Consensus 7 ~~I~IIG~G~m-G~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~~~~v~~~ 85 (307)
T PRK07502 7 DRVALIGIGLI-GSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAVAAE 85 (307)
T ss_pred cEEEEEeeCHH-HHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHHHHHHHHH
Confidence 68999998875 9999999998884 788887642 245567889999999998543 121
Q ss_pred -CCccCCCeEEEEeecc
Q 022295 226 -GSWIKPGAAVIDVGTN 241 (299)
Q Consensus 226 -~~~vk~gavVIDvg~~ 241 (299)
..+++++.+|+|+|..
T Consensus 86 l~~~l~~~~iv~dvgs~ 102 (307)
T PRK07502 86 IAPHLKPGAIVTDVGSV 102 (307)
T ss_pred HHhhCCCCCEEEeCccc
Confidence 2467899999999863
No 155
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.80 E-value=0.0021 Score=62.68 Aligned_cols=76 Identities=20% Similarity=0.223 Sum_probs=58.3
Q ss_pred CCcEEEEEcCCccchHHHHHHHhhC-CCeEEEEcCC---CCChhhhccCCcEEEEecCCCC---cCC---C--CccCCCe
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLLKA-DATVTIVHSH---TTDPESIVREADIVIAAAGQAM---MIK---G--SWIKPGA 233 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~~~-gatVtv~~~~---t~~l~~~~~~ADIVIsa~g~p~---~i~---~--~~vk~ga 233 (299)
.-.+|+|||-+|.+|..++..|.+. +.+|+.+++. +.++.+.+++||+||.|++... ++. + .++++|+
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~~~~~~~~v~~aDlVilavPv~~~~~~l~~l~~~~~~l~~~~ 82 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPGSLDPATLLQRADVLIFSAPIRHTAALIEEYVALAGGRAAGQ 82 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccccCCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhhcCCCCCe
Confidence 3468999998455699999999875 6788888653 3456778999999999998543 222 1 2379999
Q ss_pred EEEEeecc
Q 022295 234 AVIDVGTN 241 (299)
Q Consensus 234 vVIDvg~~ 241 (299)
+|.|+|..
T Consensus 83 iVtDVgSv 90 (370)
T PRK08818 83 LWLDVTSI 90 (370)
T ss_pred EEEECCCC
Confidence 99999974
No 156
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=96.79 E-value=0.028 Score=53.42 Aligned_cols=149 Identities=14% Similarity=0.173 Sum_probs=100.1
Q ss_pred CcccHHHHHHHHHHHHHcCCceeeecCCCCC---CHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccC
Q 022295 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQV---SEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDV 126 (299)
Q Consensus 50 d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~---~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDV 126 (299)
.|+-..-. +=..++.++|.++..+.-+.+. ..|-+.+..+-|+.= +|+|.+-.| .|-...++.+..
T Consensus 48 ~pSTRTR~-SFe~A~~~LGg~~i~l~~~~~s~~~kgEsi~Dta~vls~y--~D~iviR~~--~~~~~~~~a~~s------ 116 (301)
T TIGR00670 48 EPSTRTRL-SFETAMKRLGGDVVNFSDSETSSVAKGETLADTIKTLSGY--SDAIVIRHP--LEGAARLAAEVS------ 116 (301)
T ss_pred cCCchhHh-HHHHHHHHcCCcEEEcCCCCcccCCCCcCHHHHHHHHHHh--CCEEEEECC--chhHHHHHHhhC------
Confidence 44444333 4578999999988876542222 124566666666653 789999876 333333333332
Q ss_pred CCCCcccccccccCCCCCccccCCHHH-HHHHHHhhCCCcCCcEEEEEcCC--ccchHHHHHHHhhCCCeEEEEcCC---
Q 022295 127 DGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSGVTIKGKRAVVVGRS--NIVGLPVSLLLLKADATVTIVHSH--- 200 (299)
Q Consensus 127 Dg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~~l~gk~vvViG~s--~~vG~pla~lL~~~gatVtv~~~~--- 200 (299)
.+-.+|.|- .....||=+.+ ++.+.++.| +++|++|+++|-+ +-|.+.++.++...|++|++|+-.
T Consensus 117 -~vPVINa~~------g~~~HPtQ~LaDl~Ti~e~~g-~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~ 188 (301)
T TIGR00670 117 -EVPVINAGD------GSNQHPTQTLLDLYTIYEEFG-RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELR 188 (301)
T ss_pred -CCCEEeCCC------CCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCcccc
Confidence 234556431 13468999988 555555555 7999999999986 457999999999999999999733
Q ss_pred ------------------CCChhhhccCCcEEEEe
Q 022295 201 ------------------TTDPESIVREADIVIAA 217 (299)
Q Consensus 201 ------------------t~~l~~~~~~ADIVIsa 217 (299)
+.++.+.++.||+|.+-
T Consensus 189 ~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~ 223 (301)
T TIGR00670 189 MPKEILEELKAKGIKVRETESLEEVIDEADVLYVT 223 (301)
T ss_pred CCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEEC
Confidence 24567889999998874
No 157
>PRK13529 malate dehydrogenase; Provisional
Probab=96.77 E-value=0.0078 Score=61.45 Aligned_cols=139 Identities=18% Similarity=0.259 Sum_probs=98.7
Q ss_pred HHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhhC
Q 022295 83 AELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSG 162 (299)
Q Consensus 83 ~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~ 162 (299)
+|+.++++++- |++ ++|.==-+.-+--++++.. .+++-.|| ++..+---+|-.|++..++-.+
T Consensus 228 defv~av~~~~--P~~---~I~~EDf~~~~af~iL~ry--r~~i~~Fn----------DDiQGTaaV~LAgll~A~r~~g 290 (563)
T PRK13529 228 DEFVQAVKRRF--PNA---LLQFEDFAQKNARRILERY--RDEICTFN----------DDIQGTGAVTLAGLLAALKITG 290 (563)
T ss_pred HHHHHHHHHhC--CCe---EEehhhcCCchHHHHHHHh--ccCCCeec----------cccchHHHHHHHHHHHHHHHhC
Confidence 67888887776 553 5554322222334444443 22333333 2244555667788999999999
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhh----CCC-------eEEEEcCC--------------------C----------
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLK----ADA-------TVTIVHSH--------------------T---------- 201 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~----~ga-------tVtv~~~~--------------------t---------- 201 (299)
.+|+..+++++|+|.+ |..+|.+|.. +|. .+++|+++ +
T Consensus 291 ~~l~d~riv~~GAGsA-giGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~ 369 (563)
T PRK13529 291 EPLSDQRIVFLGAGSA-GCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEG 369 (563)
T ss_pred CChhhcEEEEECCCHH-HHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhccccccccccc
Confidence 9999999999999998 9999998876 576 68888754 0
Q ss_pred --CChhhhccCC--cEEEEecCCCCcCCCCccCC------CeEEEEee
Q 022295 202 --TDPESIVREA--DIVIAAAGQAMMIKGSWIKP------GAAVIDVG 239 (299)
Q Consensus 202 --~~l~~~~~~A--DIVIsa~g~p~~i~~~~vk~------gavVIDvg 239 (299)
.+|.+.++.+ |++|..++.|+.+++++|+. .-+|+=++
T Consensus 370 ~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 417 (563)
T PRK13529 370 DVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLS 417 (563)
T ss_pred CCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC
Confidence 2577889998 99999999999999988853 55666665
No 158
>PLN02342 ornithine carbamoyltransferase
Probab=96.75 E-value=0.021 Score=55.33 Aligned_cols=187 Identities=14% Similarity=0.136 Sum_probs=118.2
Q ss_pred eeeccHHHHHHHHHHHHHHHHHHHhcC--CC------CcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCC-C
Q 022295 10 TIIDGKAVAQTIRSEIAEEVRLLSEKY--GK------VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQ-V 80 (299)
Q Consensus 10 ~il~gk~~a~~i~~~~~~~v~~l~~~~--~~------~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~-~ 80 (299)
.+|+-..+.++=.+.|-+....+++.. +. .-+....++- .|....-. +=..++.++|.++.++.-... +
T Consensus 47 ~~lsi~dls~~ei~~ll~~A~~lk~~~~~~~~~~~~L~gk~va~lF~-epSTRTR~-SFE~A~~~LGg~~i~l~~~~ss~ 124 (348)
T PLN02342 47 HFLHIDDFDKEEILGLLDRAKEVKALLKSGDRSFQPFKGKSMAMIFT-KPSMRTRV-SFETGFFLLGGHALYLGPDDIQL 124 (348)
T ss_pred CccchhhCCHHHHHHHHHHHHHHHhhhhcCccccccCCCCEEEEEec-CCCcchHH-HHHHHHHHcCCcEEEeCcccccC
Confidence 356666666554455555555555421 11 1122222332 34444443 457889999999988743211 0
Q ss_pred -CHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHH
Q 022295 81 -SEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELL 158 (299)
Q Consensus 81 -~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll 158 (299)
..|.+.+.++-|..- +|+|.+-.|-...+ ..+.+.. .+-.+|.| .+...||=+.+ ++.+.
T Consensus 125 ~kGESl~DTarvLs~y--~D~IviR~~~~~~~--~~la~~~-------~vPVINA~-------~~~~HPtQaLaDl~Ti~ 186 (348)
T PLN02342 125 GKREETRDIARVLSRY--NDIIMARVFAHQDV--LDLAEYS-------SVPVINGL-------TDYNHPCQIMADALTII 186 (348)
T ss_pred CCCcCHHHHHHHHHHh--CCEEEEeCCChHHH--HHHHHhC-------CCCEEECC-------CCCCChHHHHHHHHHHH
Confidence 124566777766653 78999987633211 2222221 24456642 23468998888 55555
Q ss_pred HhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC----------------------CCChhhhccCCcEEEE
Q 022295 159 KRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH----------------------TTDPESIVREADIVIA 216 (299)
Q Consensus 159 ~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~----------------------t~~l~~~~~~ADIVIs 216 (299)
++.| +++|++|+++|-...|.+.++.+|...|++|++|+-. +.++.+.++.||+|.+
T Consensus 187 e~~G-~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~ 265 (348)
T PLN02342 187 EHIG-RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYT 265 (348)
T ss_pred HHhC-CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEE
Confidence 5555 7999999999998888999999999999999999622 2466788999999997
Q ss_pred e
Q 022295 217 A 217 (299)
Q Consensus 217 a 217 (299)
-
T Consensus 266 ~ 266 (348)
T PLN02342 266 D 266 (348)
T ss_pred C
Confidence 6
No 159
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=96.74 E-value=0.043 Score=52.41 Aligned_cols=150 Identities=13% Similarity=0.128 Sum_probs=97.0
Q ss_pred CcccHHHHHHHHHHHHHcCCceeeecCCCCCC---HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccC
Q 022295 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS---EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDV 126 (299)
Q Consensus 50 d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~---~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDV 126 (299)
.|+..... +=..++.++|..+..+. +.+++ .|-+.+.++-|+.- .+|+|.+-.|-. -.-..+.+.++
T Consensus 54 epSTRTR~-SFe~A~~~LGg~~~~~~-~~~s~~~kgEsl~Dtarvls~y-~~D~iv~R~~~~--~~~~~~a~~~~----- 123 (310)
T PRK13814 54 EPSTRTRN-SFEIAAKRLGAMVLNPN-LKISAISKGETLFDTIKTLEAM-GVYFFIVRHSEN--ETPEQIAKQLS----- 123 (310)
T ss_pred cCcchhHH-HHHHHHHHhCCeEEECC-CccccCCCCCCHHHHHHHHHHh-CCCEEEEeCCch--hHHHHHHHhCC-----
Confidence 44455544 44778889999877653 22211 14456666655542 357888876532 22233323221
Q ss_pred CCCCcccccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCC--ccchHHHHHHHhhCCC-eEEEEcCC---
Q 022295 127 DGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRS--NIVGLPVSLLLLKADA-TVTIVHSH--- 200 (299)
Q Consensus 127 Dg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s--~~vG~pla~lL~~~ga-tVtv~~~~--- 200 (299)
.+-++|.|. .+...||=+.+=+--++++-.+++|++++++|-+ +-|.+.++.++...|+ .|++|+-.
T Consensus 124 -~vPvINag~------g~~~HPtQaLaDl~Ti~e~~g~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~ 196 (310)
T PRK13814 124 -SGVVINAGD------GNHQHPSQALIDLMTIKQHKPHWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLL 196 (310)
T ss_pred -CCCeEECCc------CCCCCchHHHHHHHHHHHHhCCcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 235566532 3567899888844444443347999999999985 4569999999999998 89999632
Q ss_pred -----------CCChhhhccCCcEEEE
Q 022295 201 -----------TTDPESIVREADIVIA 216 (299)
Q Consensus 201 -----------t~~l~~~~~~ADIVIs 216 (299)
+.++.+.++.||+|.+
T Consensus 197 p~~~~~~~~~~~~d~~ea~~~aDvvy~ 223 (310)
T PRK13814 197 PDKVGNDSIKKFTELKPSLLNSDVIVT 223 (310)
T ss_pred cCccccceEEEEcCHHHHhCCCCEEEE
Confidence 3567789999999986
No 160
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.72 E-value=0.0013 Score=61.33 Aligned_cols=72 Identities=28% Similarity=0.307 Sum_probs=54.3
Q ss_pred EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC---------------ChhhhccCCcEEEEecCCCCc---CC--CCc
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT---------------DPESIVREADIVIAAAGQAMM---IK--GSW 228 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~---------------~l~~~~~~ADIVIsa~g~p~~---i~--~~~ 228 (299)
+|.|||.|.+ |..++..|.+.|..|++++++.. +..+.+++||+||.|++.... +. ...
T Consensus 2 ~I~IIG~G~m-G~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~~~~~~l~~~ 80 (279)
T PRK07417 2 KIGIVGLGLI-GGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLPPSEQLIPA 80 (279)
T ss_pred eEEEEeecHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHHHHHHHHHHh
Confidence 6899998875 99999999999999999986521 112457899999999984332 21 134
Q ss_pred cCCCeEEEEeecc
Q 022295 229 IKPGAAVIDVGTN 241 (299)
Q Consensus 229 vk~gavVIDvg~~ 241 (299)
++++++|.|+|.-
T Consensus 81 l~~~~ii~d~~Sv 93 (279)
T PRK07417 81 LPPEAIVTDVGSV 93 (279)
T ss_pred CCCCcEEEeCcch
Confidence 6789999999864
No 161
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=96.71 E-value=0.0024 Score=59.69 Aligned_cols=69 Identities=26% Similarity=0.325 Sum_probs=54.2
Q ss_pred EEcCCccchHHHHHHHhhCCCeEEEEcCC--------------CCChhhhccCCcEEEEecCCCCc----CC-----CCc
Q 022295 172 VVGRSNIVGLPVSLLLLKADATVTIVHSH--------------TTDPESIVREADIVIAAAGQAMM----IK-----GSW 228 (299)
Q Consensus 172 ViG~s~~vG~pla~lL~~~gatVtv~~~~--------------t~~l~~~~~~ADIVIsa~g~p~~----i~-----~~~ 228 (299)
+||.|.+ |.+++..|.+.|..|++++++ +.+..+.++++|+||++++.+.. +. ...
T Consensus 1 ~IGlG~m-G~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~ 79 (288)
T TIGR01692 1 FIGLGNM-GGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPK 79 (288)
T ss_pred CCcccHh-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhc
Confidence 4788775 999999999999999999865 24566789999999999987542 21 134
Q ss_pred cCCCeEEEEeecc
Q 022295 229 IKPGAAVIDVGTN 241 (299)
Q Consensus 229 vk~gavVIDvg~~ 241 (299)
+++|.++||.+..
T Consensus 80 ~~~g~~vid~st~ 92 (288)
T TIGR01692 80 VAKGSLLIDCSTI 92 (288)
T ss_pred CCCCCEEEECCCC
Confidence 6789999999854
No 162
>PRK06545 prephenate dehydrogenase; Validated
Probab=96.71 E-value=0.0026 Score=61.50 Aligned_cols=73 Identities=27% Similarity=0.407 Sum_probs=55.2
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC------------------CChhhhccCCcEEEEecCCCC---cC--
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT------------------TDPESIVREADIVIAAAGQAM---MI-- 224 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t------------------~~l~~~~~~ADIVIsa~g~p~---~i-- 224 (299)
++|.|||.|.+ |..++..|.+.|..|.+..+.. .++.+.+++||+||.|++... ++
T Consensus 1 ~~I~iIG~Gli-G~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~vl~~ 79 (359)
T PRK06545 1 RTVLIVGLGLI-GGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAALLAE 79 (359)
T ss_pred CeEEEEEeCHH-HHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHHHHHH
Confidence 47999998876 9999999999998777775431 234566789999999998543 22
Q ss_pred -CCCccCCCeEEEEeecc
Q 022295 225 -KGSWIKPGAAVIDVGTN 241 (299)
Q Consensus 225 -~~~~vk~gavVIDvg~~ 241 (299)
.+..++++++|.|+|..
T Consensus 80 l~~~~l~~~~ivtDv~Sv 97 (359)
T PRK06545 80 LADLELKPGVIVTDVGSV 97 (359)
T ss_pred HhhcCCCCCcEEEeCccc
Confidence 22247889999999975
No 163
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=96.70 E-value=0.027 Score=53.56 Aligned_cols=147 Identities=21% Similarity=0.290 Sum_probs=100.0
Q ss_pred cccHHHHHHHHHHHHHcCCceeeecCCCCC--CHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCC
Q 022295 51 KDSQSYVSMKRKACAEVGIKSFDIDLPEQV--SEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128 (299)
Q Consensus 51 ~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~--~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg 128 (299)
|+...-. +=..++.++|.++.++.-.... ..|-+.+.+.-|+.- +|+|.+-.|-..-+ ..+.+.. .
T Consensus 49 pSTRTR~-SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~vls~y--~D~iv~R~~~~~~~--~~~a~~~-------~ 116 (304)
T TIGR00658 49 PSTRTRV-SFEVAAYQLGGHPLYLNPNDLQLGRGESIKDTARVLSRY--VDGIMARVYKHEDV--EELAKYA-------S 116 (304)
T ss_pred CCcchHH-HHHHHHHHcCCCEEEeCCccccCCCCCCHHHHHHHHHHh--CCEEEEECCChHHH--HHHHHhC-------C
Confidence 4444433 4578899999998877532111 125577777777764 78999987633222 3333322 2
Q ss_pred CCcccccccccCCCCCccccCCHHH-HHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------
Q 022295 129 FHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH------- 200 (299)
Q Consensus 129 ~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~------- 200 (299)
+-.+|.| .....||=+.+ ++.+.++.| .++|.+|+++|-..-|.+.++.+|...|+.|++|+-.
T Consensus 117 vPVINa~-------~~~~HPtQaL~Dl~Ti~e~~g-~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~ 188 (304)
T TIGR00658 117 VPVINGL-------TDLFHPCQALADLLTIIEHFG-KLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDAD 188 (304)
T ss_pred CCEEECC-------CCCCChHHHHHHHHHHHHHhC-CCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHH
Confidence 3456653 13468998888 445555555 5999999999986668999999999999999999722
Q ss_pred ------------------CCChhhhccCCcEEEEe
Q 022295 201 ------------------TTDPESIVREADIVIAA 217 (299)
Q Consensus 201 ------------------t~~l~~~~~~ADIVIsa 217 (299)
+.++.+.+++||+|.+-
T Consensus 189 ~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~ 223 (304)
T TIGR00658 189 IVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTD 223 (304)
T ss_pred HHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 24667899999999974
No 164
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=96.69 E-value=0.026 Score=56.19 Aligned_cols=190 Identities=13% Similarity=0.075 Sum_probs=116.1
Q ss_pred eeccHHHHHHHHHHHHHHHHHHHhcC--C-----CCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCC--
Q 022295 11 IIDGKAVAQTIRSEIAEEVRLLSEKY--G-----KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS-- 81 (299)
Q Consensus 11 il~gk~~a~~i~~~~~~~v~~l~~~~--~-----~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~-- 81 (299)
+|+-..+.++=.+.|-+....++... + ..-+....++ ..|+...-. +=..++.++|..+.++.=+.+++
T Consensus 90 lLsi~Dls~~ei~~Ll~~A~~lK~~~~~~~~~~~L~GK~v~~lF-~epSTRTR~-SFE~A~~~LGg~~i~l~~~~~ss~~ 167 (429)
T PRK11891 90 LLSVDQFSRDSVEALFRVADVMQPIARRQKISRVLEGAVLGNLF-FEASTRTRV-SFGAAFCRLGGSVCDTTGFTFSSMA 167 (429)
T ss_pred ccchhhCCHHHHHHHHHHHHHHHHhhhcCccccccCCcEEEEEe-ccCCchhHH-HHHHHHHHcCCeEEEeCCccccCCC
Confidence 66666666554555555555554321 1 1112222222 244444444 45788899999988774221211
Q ss_pred -HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHHH
Q 022295 82 -EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLK 159 (299)
Q Consensus 82 -~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~ 159 (299)
.|-+.+...-|+.= +|+|.+-.|- +-...++.+.. .+-.+|.|- .+.+.||=+.+ ++.+.+
T Consensus 168 kGESi~DTarvLs~y--~D~IviR~~~--~~~~~e~A~~s-------~vPVINAgd------g~~~HPtQaLaDl~Ti~E 230 (429)
T PRK11891 168 KGESIYDTSRVMSGY--VDALVIRHPE--QGSVAEFARAT-------NLPVINGGD------GPGEHPSQALLDLYTIQR 230 (429)
T ss_pred CCCCHHHHHHHHHHh--CCEEEEeCCc--hhHHHHHHHhC-------CCCEEECCC------CCCCCcHHHHHHHHHHHH
Confidence 23455666555553 7888888653 32223333322 234556431 24578998888 666666
Q ss_pred hhCC---CcCCcEEEEEcCC--ccchHHHHHHHhhC-CCeEEEEcCC---------------------CCChhhhccCCc
Q 022295 160 RSGV---TIKGKRAVVVGRS--NIVGLPVSLLLLKA-DATVTIVHSH---------------------TTDPESIVREAD 212 (299)
Q Consensus 160 ~~~~---~l~gk~vvViG~s--~~vG~pla~lL~~~-gatVtv~~~~---------------------t~~l~~~~~~AD 212 (299)
+.|. .++|++|+++|-. +-|.+.++.+|... |++|++|+-. +.++.+.++.||
T Consensus 231 ~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~AD 310 (429)
T PRK11891 231 EFSRLGKIVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGAD 310 (429)
T ss_pred HhCccCCCcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCC
Confidence 6652 4999999999985 44688888887775 9999999632 356778999999
Q ss_pred EEEEecC
Q 022295 213 IVIAAAG 219 (299)
Q Consensus 213 IVIsa~g 219 (299)
+|.+..+
T Consensus 311 VVYt~~~ 317 (429)
T PRK11891 311 VVYATRI 317 (429)
T ss_pred EEEEcCc
Confidence 9998554
No 165
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.66 E-value=0.0037 Score=58.85 Aligned_cols=72 Identities=18% Similarity=0.246 Sum_probs=55.1
Q ss_pred EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccC---CcEEEEecCCCCc----CC--
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVRE---ADIVIAAAGQAMM----IK-- 225 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~---ADIVIsa~g~p~~----i~-- 225 (299)
++.+||.|.+ |.+++..|.+.|.+|++++++. .+.++..++ +|+||++++.+.. +.
T Consensus 2 ~Ig~IGlG~m-G~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~i 80 (299)
T PRK12490 2 KLGLIGLGKM-GGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKDL 80 (299)
T ss_pred EEEEEcccHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHHH
Confidence 5899999886 9999999999999999998752 345565555 6999999987621 21
Q ss_pred CCccCCCeEEEEeecc
Q 022295 226 GSWIKPGAAVIDVGTN 241 (299)
Q Consensus 226 ~~~vk~gavVIDvg~~ 241 (299)
...+++|.++||++..
T Consensus 81 ~~~l~~g~ivid~st~ 96 (299)
T PRK12490 81 YPLLSPGDIVVDGGNS 96 (299)
T ss_pred hccCCCCCEEEECCCC
Confidence 1346789999999754
No 166
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.65 E-value=0.0028 Score=62.64 Aligned_cols=74 Identities=22% Similarity=0.288 Sum_probs=55.2
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC---------------Chhhh---------------ccCCcEEEEe
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT---------------DPESI---------------VREADIVIAA 217 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~---------------~l~~~---------------~~~ADIVIsa 217 (299)
++|.|||.|. +|.|+|..|++.|.+|+.++++.. .+.+. ..+||+||.+
T Consensus 4 ~kI~VIGlG~-~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~ 82 (415)
T PRK11064 4 ETISVIGLGY-IGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA 82 (415)
T ss_pred cEEEEECcch-hhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence 6899999887 599999999999999999986532 22222 2379999999
Q ss_pred cCCC---------CcCC------CCccCCCeEEEEeeccC
Q 022295 218 AGQA---------MMIK------GSWIKPGAAVIDVGTNA 242 (299)
Q Consensus 218 ~g~p---------~~i~------~~~vk~gavVIDvg~~~ 242 (299)
++.| ..+. ...+++|++||+.++.+
T Consensus 83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~ 122 (415)
T PRK11064 83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSP 122 (415)
T ss_pred cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 9987 1121 23468899999877643
No 167
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=96.63 E-value=0.0061 Score=57.37 Aligned_cols=72 Identities=13% Similarity=0.265 Sum_probs=55.5
Q ss_pred EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhccCCcEEEEecCCCC----cC-CC----
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIVREADIVIAAAGQAM----MI-KG---- 226 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~~~ADIVIsa~g~p~----~i-~~---- 226 (299)
+|.+||.|.+ |.+++..|.+.|..|++++++. .+..+..++||+||+++..+. .+ ..
T Consensus 2 ~Ig~IGlG~M-G~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~ 80 (292)
T PRK15059 2 KLGFIGLGIM-GTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT 80 (292)
T ss_pred eEEEEccCHH-HHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence 5899998886 9999999999999999887542 244567889999999998653 12 22
Q ss_pred CccCCCeEEEEeecc
Q 022295 227 SWIKPGAAVIDVGTN 241 (299)
Q Consensus 227 ~~vk~gavVIDvg~~ 241 (299)
..+++|.++||++..
T Consensus 81 ~~~~~g~ivvd~sT~ 95 (292)
T PRK15059 81 KASLKGKTIVDMSSI 95 (292)
T ss_pred ccCCCCCEEEECCCC
Confidence 235789999999854
No 168
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.62 E-value=0.0041 Score=52.40 Aligned_cols=54 Identities=22% Similarity=0.449 Sum_probs=43.8
Q ss_pred EEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCC------------------------CChhhhccCCcEEEEecCCCC
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHT------------------------TDPESIVREADIVIAAAGQAM 222 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t------------------------~~l~~~~~~ADIVIsa~g~p~ 222 (299)
+|+|||+++.||..++.+|...+. ++.+++.+. .+..+.+++|||||.+.|.|.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~~ 81 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVPR 81 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTSS
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccccc
Confidence 799999967789999999998873 688887651 244588999999999999763
No 169
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=96.61 E-value=0.17 Score=48.22 Aligned_cols=187 Identities=16% Similarity=0.185 Sum_probs=114.9
Q ss_pred eeeccHHHHHHHHHHHHHHHHHHHhcCC-------CCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCC-C-
Q 022295 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYG-------KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQ-V- 80 (299)
Q Consensus 10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~-------~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~-~- 80 (299)
.+|+-+.+.++=.+.|-+....++.... -.-+....++= .|+...- -+=..++.++|.++.++.-... +
T Consensus 6 ~ll~i~dls~~~l~~ll~~A~~~k~~~~~~~~~~~L~gk~v~~lF~-e~STRTR-~SFe~A~~~LGg~~i~l~~~~ss~~ 83 (304)
T PRK00779 6 HFLSLDDLSPEELEELLDLAAELKKKRKAGEPHPPLKGKTLAMIFE-KPSTRTR-VSFEVGMAQLGGHAIFLSPRDTQLG 83 (304)
T ss_pred cEeehhhCCHHHHHHHHHHHHHHHhHhhcCCccccCCCCEEEEEec-CCCchHH-HHHHHHHHHcCCcEEEECcccccCC
Confidence 4666666655544444444444433211 11222333332 2333333 3558899999999887753211 0
Q ss_pred CHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHHH
Q 022295 81 SEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLK 159 (299)
Q Consensus 81 ~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~ 159 (299)
..|.+.+.++-|+.- +|+|.+-.|-..-+ ..+.+. -.+-.+|.|. ....||=+.+ ++.+.+
T Consensus 84 kgEsl~Dt~~~l~~~--~D~iv~R~~~~~~~--~~~a~~-------~~vPVINag~-------~~~HPtQaL~Dl~Ti~e 145 (304)
T PRK00779 84 RGEPIEDTARVLSRY--VDAIMIRTFEHETL--EELAEY-------STVPVINGLT-------DLSHPCQILADLLTIYE 145 (304)
T ss_pred CCcCHHHHHHHHHHh--CCEEEEcCCChhHH--HHHHHh-------CCCCEEeCCC-------CCCChHHHHHHHHHHHH
Confidence 124577777777663 78888876633211 222222 1245667641 2357988888 444445
Q ss_pred hhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC----------------------CCChhhhccCCcEEEEe
Q 022295 160 RSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH----------------------TTDPESIVREADIVIAA 217 (299)
Q Consensus 160 ~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~----------------------t~~l~~~~~~ADIVIsa 217 (299)
+.| .++|++++++|-..-|.+.++.+|...|++|++|+-. +.++.+.+++||+|.+-
T Consensus 146 ~~g-~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~ 224 (304)
T PRK00779 146 HRG-SLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTD 224 (304)
T ss_pred HhC-CcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 555 6999999999986668999999999999999999632 24667889999999975
No 170
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.58 E-value=0.0019 Score=63.27 Aligned_cols=110 Identities=26% Similarity=0.341 Sum_probs=75.7
Q ss_pred cEEEEEcCCccchHHHHHHHhhCC-CeEEEEcCCC------------------------CChhhhccCCcEEEEecCCCC
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSHT------------------------TDPESIVREADIVIAAAGQAM 222 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~t------------------------~~l~~~~~~ADIVIsa~g~p~ 222 (299)
++|+|||+|+ ||+++|+.|++.+ ..|++..++- +.+.+.+++.|+||++.+.+.
T Consensus 2 ~~ilviGaG~-Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~ 80 (389)
T COG1748 2 MKILVIGAGG-VGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV 80 (389)
T ss_pred CcEEEECCch-hHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh
Confidence 6899999988 5999999999998 7999998651 135588999999999987554
Q ss_pred c--CCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhceeccCCC-CccHHHHHHHHHHHHH
Q 022295 223 M--IKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPG-GVGPMTVAMLLRNTLD 291 (299)
Q Consensus 223 ~--i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPG-GVGp~T~a~L~~n~v~ 291 (299)
- +=...++-|.-++|+.+..... -+++..+++++ +|-+|| |+-|=-+..+....++
T Consensus 81 ~~~i~ka~i~~gv~yvDts~~~~~~------------~~~~~~a~~Ag-it~v~~~G~dPGi~nv~a~~a~~ 139 (389)
T COG1748 81 DLTILKACIKTGVDYVDTSYYEEPP------------WKLDEEAKKAG-ITAVLGCGFDPGITNVLAAYAAK 139 (389)
T ss_pred hHHHHHHHHHhCCCEEEcccCCchh------------hhhhHHHHHcC-eEEEcccCcCcchHHHHHHHHHH
Confidence 2 3345678899999998865321 12445666666 344443 4445444455554443
No 171
>PLN02527 aspartate carbamoyltransferase
Probab=96.55 E-value=0.16 Score=48.34 Aligned_cols=150 Identities=14% Similarity=0.176 Sum_probs=99.6
Q ss_pred CcccHHHHHHHHHHHHHcCCceeeecCCC-CCC---HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCcccc
Q 022295 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPE-QVS---EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKD 125 (299)
Q Consensus 50 d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~-~~~---~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KD 125 (299)
.|+-..-. +=..++.++|.++.++.-.. +.+ .|-+.+.++-|+.= +|+|.+-.|-... ..++.+.. .
T Consensus 48 epStRTR~-SFe~A~~~LGg~~i~l~~~~~~s~~~kgEs~~Dta~vls~y--~D~iviR~~~~~~--~~~~a~~~----~ 118 (306)
T PLN02527 48 EPSTRTRL-SFESAMKRLGGEVLTTENAGEFSSAAKGETLEDTIRTVEGY--SDIIVLRHFESGA--ARRAAATA----E 118 (306)
T ss_pred CCCchhHH-HHHHHHHHcCCCEEEeCCCCCccccCCCcCHHHHHHHHHHh--CcEEEEECCChhH--HHHHHHhC----C
Confidence 45444444 45789999999988876531 211 35566777766653 7899998763322 23333222 1
Q ss_pred CCCCCcccccccccCCCCCccccCCHHH-HHHHHHhhCCCcCCcEEEEEcCC-c-cchHHHHHHHhhC-CCeEEEEcCC-
Q 022295 126 VDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSGVTIKGKRAVVVGRS-N-IVGLPVSLLLLKA-DATVTIVHSH- 200 (299)
Q Consensus 126 VDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~~l~gk~vvViG~s-~-~vG~pla~lL~~~-gatVtv~~~~- 200 (299)
+-.+|.|- .+...||=+.+ ++.+.++.| +++|++|+++|-+ . -|.+.++.+|... |++|++|.-.
T Consensus 119 ---vPVINa~~------g~~~HPtQ~LaDl~Ti~e~~g-~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~ 188 (306)
T PLN02527 119 ---IPVINAGD------GPGQHPTQALLDVYTIQREIG-RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDV 188 (306)
T ss_pred ---CCEEECCC------CCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCc
Confidence 34456431 23468998888 444445555 6999999999975 2 2688888888776 8999998632
Q ss_pred --------------------CCChhhhccCCcEEEEec
Q 022295 201 --------------------TTDPESIVREADIVIAAA 218 (299)
Q Consensus 201 --------------------t~~l~~~~~~ADIVIsa~ 218 (299)
+.++.+.++.||+|.+-.
T Consensus 189 ~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~ 226 (306)
T PLN02527 189 VKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTR 226 (306)
T ss_pred cCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECC
Confidence 346789999999999843
No 172
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=96.53 E-value=0.0052 Score=62.87 Aligned_cols=99 Identities=14% Similarity=0.204 Sum_probs=80.0
Q ss_pred CCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhh-----CCC-------eEEEEcCC----------
Q 022295 143 DPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK-----ADA-------TVTIVHSH---------- 200 (299)
Q Consensus 143 ~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~-----~ga-------tVtv~~~~---------- 200 (299)
..+---+|-.|++..++-.+.+|+..+++++|+|.+ |..+|.+|.. .|. .+++|+++
T Consensus 297 iQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsA-gigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~ 375 (581)
T PLN03129 297 IQGTAAVALAGLLAALRATGGDLADQRILFAGAGEA-GTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDS 375 (581)
T ss_pred cchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHH-HHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCcc
Confidence 344456677889999999999999999999999998 9999988876 355 68888754
Q ss_pred --------------CCChhhhccC--CcEEEEecCCCCcCCCCccC------CCeEEEEeeccCC
Q 022295 201 --------------TTDPESIVRE--ADIVIAAAGQAMMIKGSWIK------PGAAVIDVGTNAV 243 (299)
Q Consensus 201 --------------t~~l~~~~~~--ADIVIsa~g~p~~i~~~~vk------~gavVIDvg~~~~ 243 (299)
..+|.+.++. +|++|.+++.|+.+++++|+ +.-+|+=++ ||.
T Consensus 376 l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLS-NPt 439 (581)
T PLN03129 376 LQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALS-NPT 439 (581)
T ss_pred ChHHHHHHHhhcccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC-CCC
Confidence 1367788888 99999999999999999986 566777766 443
No 173
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=96.51 E-value=0.0049 Score=53.55 Aligned_cols=70 Identities=24% Similarity=0.353 Sum_probs=48.7
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCC---CCcCC--
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQ---AMMIK-- 225 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~---p~~i~-- 225 (299)
|+||+|.|||.|.- |+.-|+-|.+.|.+|+++.+.. .+..|.++.||+|+..++. +.+..
T Consensus 2 l~~k~IAViGyGsQ-G~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD~~q~~vy~~~ 80 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQ-GHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPDEVQPEVYEEE 80 (165)
T ss_dssp HCTSEEEEES-SHH-HHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-HHHHHHHHHHH
T ss_pred cCCCEEEEECCChH-HHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCChHHHHHHHHHH
Confidence 58999999999986 9999999999999999998663 3567999999999998873 22221
Q ss_pred -CCccCCCeEE
Q 022295 226 -GSWIKPGAAV 235 (299)
Q Consensus 226 -~~~vk~gavV 235 (299)
...+++|+++
T Consensus 81 I~p~l~~G~~L 91 (165)
T PF07991_consen 81 IAPNLKPGATL 91 (165)
T ss_dssp HHHHS-TT-EE
T ss_pred HHhhCCCCCEE
Confidence 1247888654
No 174
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=96.51 E-value=0.018 Score=58.73 Aligned_cols=140 Identities=18% Similarity=0.180 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHHHHHHHHhh
Q 022295 82 EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRS 161 (299)
Q Consensus 82 ~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~av~~ll~~~ 161 (299)
-+|+.++++++- |+ .++|.==...-+.-++++... +++-.|| ++..+---++-.|++..++-.
T Consensus 229 ~defv~av~~~~--P~---~~Iq~EDf~~~naf~iL~kyr--~~i~~Fn----------DDiQGTaaV~lAgll~Alr~~ 291 (559)
T PTZ00317 229 LDEFMEAVSSRW--PN---AVVQFEDFSNNHCFDLLERYQ--NKYRCFN----------DDIQGTGAVIAAGFLNALKLS 291 (559)
T ss_pred HHHHHHHHHHhC--CC---eEEehhhcCCccHHHHHHHhc--cCCCEec----------ccchhHHHHHHHHHHHHHHHh
Confidence 367777777765 44 355553222223334444432 1222222 224455567788999999999
Q ss_pred CCCcCCcEEEEEcCCccchHHHHHHHhh----CCC-------eEEEEcCC-----------------------------C
Q 022295 162 GVTIKGKRAVVVGRSNIVGLPVSLLLLK----ADA-------TVTIVHSH-----------------------------T 201 (299)
Q Consensus 162 ~~~l~gk~vvViG~s~~vG~pla~lL~~----~ga-------tVtv~~~~-----------------------------t 201 (299)
+.+|+..++++.|+|.+ |..+|.+|.. +|. .+++|+++ .
T Consensus 292 g~~l~d~riv~~GAGsA-giGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~ 370 (559)
T PTZ00317 292 GVPPEEQRIVFFGAGSA-AIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSL 370 (559)
T ss_pred CCChhhcEEEEECCCHH-HHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccC
Confidence 99999999999999998 9999998873 666 68888753 1
Q ss_pred CChhhhccCC--cEEEEecCCCCcCCCCccC------CCeEEEEee
Q 022295 202 TDPESIVREA--DIVIAAAGQAMMIKGSWIK------PGAAVIDVG 239 (299)
Q Consensus 202 ~~l~~~~~~A--DIVIsa~g~p~~i~~~~vk------~gavVIDvg 239 (299)
.+|.+.++.+ |++|.+.+.|+.+++++|+ +.-+|+=++
T Consensus 371 ~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLS 416 (559)
T PTZ00317 371 KTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLS 416 (559)
T ss_pred CCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC
Confidence 2577888888 9999999999999998885 355666665
No 175
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=96.50 E-value=0.051 Score=52.89 Aligned_cols=157 Identities=17% Similarity=0.176 Sum_probs=99.2
Q ss_pred CcccHHHHHHHHHHHHHcCCceeeecCCCCCC---HHHHHHHHHHhcCCCCceEEEEeCCCC---CCCCHHHHHccCC-c
Q 022295 50 RKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS---EAELISKVHELNVMPDVHGILVQLPLP---KHINEEKVLGEIS-L 122 (299)
Q Consensus 50 d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~---~~el~~~i~~ln~d~~v~GIlvq~Plp---~~i~~~~i~~~i~-p 122 (299)
.|+...-. +=..++.++|.++.++.- .+++ -|-+.+.++-|+.= +|+|.+-.|-. .+-.-+.+.+... .
T Consensus 51 epSTRTR~-SFE~A~~~LGg~~i~l~~-~~s~~~kgEsl~Dtarvls~y--~D~Iv~R~~~~~~~~~~~l~~~a~~~~~~ 126 (357)
T TIGR03316 51 DNSTRTRF-SFASAMNLLGLHAQDLDE-GKSQIGHGETVRETAEMISFF--ADGIGIRDDMYIGVGNAYMREVAKYVQEG 126 (357)
T ss_pred CCCcchHH-HHHHHHHHcCCcEEEeCC-ccccCCCCCCHHHHHHHHHHh--CcEEEEeCCCccccccHHHHHHHHhhhhc
Confidence 44444444 457789999999988863 3322 24566666666653 78999987742 1111122323311 1
Q ss_pred ccc-C--CCCCcccccccccCCCCCccccCCHHH-HHHHHHhhCC--CcCCcEEEEEcC-------CccchHHHHHHHhh
Q 022295 123 EKD-V--DGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSGV--TIKGKRAVVVGR-------SNIVGLPVSLLLLK 189 (299)
Q Consensus 123 ~KD-V--Dg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~--~l~gk~vvViG~-------s~~vG~pla~lL~~ 189 (299)
-|| | -.+-.+|.| .+.+.||=+.+ ++.+.++.|. .++|++|+++|. ...|.+.++.++..
T Consensus 127 ~~~~~~~s~vPVINa~-------~~~~HPtQaLaDl~Ti~e~~G~~~~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~ 199 (357)
T TIGR03316 127 YKDGVLEQRPPLVNLQ-------CDIDHPTQAMADIMTLQEKFGGIENLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTR 199 (357)
T ss_pred cccccccCCCCEEECC-------CCCCCchHHHHHHHHHHHHhCCccccCCCEEEEEeccccccCccchHHHHHHHHHHH
Confidence 122 0 013345643 23478998888 5555566664 489999999963 33567888888999
Q ss_pred CCCeEEEEcCC-------------------------CCChhhhccCCcEEEEe
Q 022295 190 ADATVTIVHSH-------------------------TTDPESIVREADIVIAA 217 (299)
Q Consensus 190 ~gatVtv~~~~-------------------------t~~l~~~~~~ADIVIsa 217 (299)
.|++|++|+-. +.++.+.+++||+|.+-
T Consensus 200 ~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 252 (357)
T TIGR03316 200 FGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDADIVYPK 252 (357)
T ss_pred cCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence 99999999733 24556888999998865
No 176
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.50 E-value=0.0022 Score=52.31 Aligned_cols=75 Identities=24% Similarity=0.311 Sum_probs=51.1
Q ss_pred EEEEEcCCccchHHHHHHHhhCC-Ce-EEEEcCCC---CCh-------------------hhhccCCcEEEEecCCC--C
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKAD-AT-VTIVHSHT---TDP-------------------ESIVREADIVIAAAGQA--M 222 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~g-at-Vtv~~~~t---~~l-------------------~~~~~~ADIVIsa~g~p--~ 222 (299)
||.|||++|.+|+-+..+|.++- .+ +.++.++. +.+ .+.+.++|+||.|++.- .
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~ 80 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK 80 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence 68999999999999999999853 34 44443332 111 13468999999998742 1
Q ss_pred cCCCCccCCCeEEEEeeccCC
Q 022295 223 MIKGSWIKPGAAVIDVGTNAV 243 (299)
Q Consensus 223 ~i~~~~vk~gavVIDvg~~~~ 243 (299)
-+-+..+++|..|||.+....
T Consensus 81 ~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 81 ELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp HHHHHHHHTTSEEEESSSTTT
T ss_pred HHHHHHhhCCcEEEeCCHHHh
Confidence 133344788999999987653
No 177
>PRK08655 prephenate dehydrogenase; Provisional
Probab=96.48 E-value=0.0048 Score=61.44 Aligned_cols=72 Identities=22% Similarity=0.349 Sum_probs=54.9
Q ss_pred EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC---------------CChhhhccCCcEEEEecCCCC---cCC--CCc
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT---------------TDPESIVREADIVIAAAGQAM---MIK--GSW 228 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t---------------~~l~~~~~~ADIVIsa~g~p~---~i~--~~~ 228 (299)
++.|||..|.+|..++..|.+.|..|+++.++. .+..+.+.+||+||.+++... ++. ..+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl~~l~~~ 81 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINVTEDVIKEVAPH 81 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHHHHHHHHHHHhh
Confidence 689998434459999999999999999987642 244566889999999998533 221 245
Q ss_pred cCCCeEEEEeec
Q 022295 229 IKPGAAVIDVGT 240 (299)
Q Consensus 229 vk~gavVIDvg~ 240 (299)
++++++|+|++.
T Consensus 82 l~~~~iViDvsS 93 (437)
T PRK08655 82 VKEGSLLMDVTS 93 (437)
T ss_pred CCCCCEEEEccc
Confidence 789999999996
No 178
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.46 E-value=0.0047 Score=57.65 Aligned_cols=71 Identities=17% Similarity=0.282 Sum_probs=52.2
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCC----eEEEEcCCC---------------CChhhhccCCcEEEEecCCCCcC----
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADA----TVTIVHSHT---------------TDPESIVREADIVIAAAGQAMMI---- 224 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~ga----tVtv~~~~t---------------~~l~~~~~~ADIVIsa~g~p~~i---- 224 (299)
.++.+||.|.+ |.+++..|.+.|. +|++++++. .+..+.+++||+||.++. |..+
T Consensus 3 ~~IgfIG~G~M-G~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl 80 (272)
T PRK12491 3 KQIGFIGCGNM-GIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVI 80 (272)
T ss_pred CeEEEECccHH-HHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHH
Confidence 47999998886 9999999998773 688887541 234456789999999998 4422
Q ss_pred C--CCccCCCeEEEEeec
Q 022295 225 K--GSWIKPGAAVIDVGT 240 (299)
Q Consensus 225 ~--~~~vk~gavVIDvg~ 240 (299)
. ...++++.+|||+.-
T Consensus 81 ~~l~~~~~~~~lvISi~A 98 (272)
T PRK12491 81 NQIKDQIKNDVIVVTIAA 98 (272)
T ss_pred HHHHHhhcCCcEEEEeCC
Confidence 1 134677889999864
No 179
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=96.44 E-value=0.01 Score=55.15 Aligned_cols=56 Identities=27% Similarity=0.307 Sum_probs=45.9
Q ss_pred CccccCCHHHHHHHHH----hhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEE-EEcCC
Q 022295 144 PLFLPCTPKGCLELLK----RSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVT-IVHSH 200 (299)
Q Consensus 144 ~~~~PcT~~av~~ll~----~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVt-v~~~~ 200 (299)
.+--+.|++|++..++ +.+.+++|++|+|-|.|+ ||..++.+|...|++|+ |++++
T Consensus 11 ~gR~~aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGn-VG~~~a~~L~e~GakvvaVsD~~ 71 (254)
T cd05313 11 LIRPEATGYGLVYFVEEMLKDRNETLKGKRVAISGSGN-VAQYAAEKLLELGAKVVTLSDSK 71 (254)
T ss_pred CCCCchhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEECCC
Confidence 3446789988776655 568899999999999888 59999999999999877 77643
No 180
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.43 E-value=0.006 Score=56.72 Aligned_cols=72 Identities=15% Similarity=0.261 Sum_probs=53.4
Q ss_pred CCcEEEEEcCCccchHHHHHHHhhCC----CeEEEEcCCC----------------CChhhhccCCcEEEEecCCCCc--
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLLKAD----ATVTIVHSHT----------------TDPESIVREADIVIAAAGQAMM-- 223 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~~~g----atVtv~~~~t----------------~~l~~~~~~ADIVIsa~g~p~~-- 223 (299)
++.++.+||.|.+ |.+++..|.+.| ..|++++++. .+..+.+++||+||.++....+
T Consensus 2 ~~mkI~~IG~G~m-G~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~~~ 80 (279)
T PRK07679 2 SIQNISFLGAGSI-AEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVAE 80 (279)
T ss_pred CCCEEEEECccHH-HHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHHHH
Confidence 3468999998886 999999999887 5788887642 1334567899999999885432
Q ss_pred -CC--CCccCCCeEEEEe
Q 022295 224 -IK--GSWIKPGAAVIDV 238 (299)
Q Consensus 224 -i~--~~~vk~gavVIDv 238 (299)
+. .+.++++.+|||+
T Consensus 81 vl~~l~~~~~~~~liIs~ 98 (279)
T PRK07679 81 ALIPFKEYIHNNQLIISL 98 (279)
T ss_pred HHHHHHhhcCCCCEEEEE
Confidence 21 1346788999997
No 181
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=96.38 E-value=0.052 Score=52.41 Aligned_cols=189 Identities=15% Similarity=0.070 Sum_probs=113.2
Q ss_pred eeccHHHHHHHHHHHHHHHHHHHhcC--C-----CCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCC--
Q 022295 11 IIDGKAVAQTIRSEIAEEVRLLSEKY--G-----KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS-- 81 (299)
Q Consensus 11 il~gk~~a~~i~~~~~~~v~~l~~~~--~-----~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~-- 81 (299)
+|+-..+.++=.+.|-+...++++.. . -.-+....++ ..|+-.... +=..++.++|..+.++.=+++++
T Consensus 8 ~L~~~dls~~el~~ll~~A~~lk~~~~~~~~~~~L~gk~v~~lF-~epSTRTR~-SFe~A~~~LGg~~i~~~~~~~s~~~ 85 (338)
T PRK08192 8 ILSVNQLDRDAIQRIFNVADRMEPYALREKRTRVLEGAILGNLF-FEPSTRTRV-SFGCAFNLLGGHVRETTGMASSSLS 85 (338)
T ss_pred CCchHhCCHHHHHHHHHHHHHHHhhhcccccccccCCCEEEEEE-cCCCcchHH-HHHHHHHHcCCcEEeecCcccccCC
Confidence 56666665544455555555555311 1 1112222223 245555555 44788999999987642222221
Q ss_pred -HHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHHH
Q 022295 82 -EAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLK 159 (299)
Q Consensus 82 -~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~ 159 (299)
.|-+.+.++-|+.= +|+|.+-.|-... ..++.+.. . +-.+|.|- | +...||=+.+ ++.+.+
T Consensus 86 kgEsl~Dtarvls~y--~D~IviR~~~~~~--~~~~a~~~----~---vPVINa~~---g---~~~HPtQaLaDl~Ti~e 148 (338)
T PRK08192 86 KGESLYDTARVLSTY--SDVIAMRHPDAGS--VKEFAEGS----R---VPVINGGD---G---SNEHPTQALLDLFTIQK 148 (338)
T ss_pred CCCCHHHHHHHHHHc--CCEEEEeCCchhH--HHHHHHhC----C---CCEEECCC---C---CCCCcHHHHHHHHHHHH
Confidence 24566666666653 7899998763322 23332221 2 33556431 1 3568998888 555555
Q ss_pred hh---CCCcCCcEEEEEcCC--ccchHHHHHHHhhC-CCeEEEEcCC---------------------CCChhhhccCCc
Q 022295 160 RS---GVTIKGKRAVVVGRS--NIVGLPVSLLLLKA-DATVTIVHSH---------------------TTDPESIVREAD 212 (299)
Q Consensus 160 ~~---~~~l~gk~vvViG~s--~~vG~pla~lL~~~-gatVtv~~~~---------------------t~~l~~~~~~AD 212 (299)
+. |.+++|++|+++|-+ +-+...++.+|... |+.|++++-. +.++.+.+++||
T Consensus 149 ~~~~~g~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aD 228 (338)
T PRK08192 149 ELAHAGRGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKAD 228 (338)
T ss_pred HhhccCCCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCC
Confidence 44 357999999999985 34577777766644 8899888632 246778999999
Q ss_pred EEEEec
Q 022295 213 IVIAAA 218 (299)
Q Consensus 213 IVIsa~ 218 (299)
+|.+-.
T Consensus 229 vvyt~~ 234 (338)
T PRK08192 229 ILYLTR 234 (338)
T ss_pred EEEEcC
Confidence 999853
No 182
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.37 E-value=0.0062 Score=61.29 Aligned_cols=111 Identities=19% Similarity=0.229 Sum_probs=66.2
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChh----------------hhccCCcEEEEecCCCCcCCCCc
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPE----------------SIVREADIVIAAAGQAMMIKGSW 228 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~----------------~~~~~ADIVIsa~g~p~~i~~~~ 228 (299)
+.|++|+|+|.|.. |++++.+|..+|++|++++.....+. +.++++|+||.+.|.|.- ...
T Consensus 10 ~~~~~v~V~G~G~s-G~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~--~p~ 86 (488)
T PRK03369 10 LPGAPVLVAGAGVT-GRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPT--APV 86 (488)
T ss_pred cCCCeEEEEcCCHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCC--CHH
Confidence 36899999999997 99999999999999999985532222 112334444444443310 000
Q ss_pred cCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhh------hceeccCCCCccHHHHHHHHHHHHHHH
Q 022295 229 IKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKV------AGCVTPVPGGVGPMTVAMLLRNTLDGA 293 (299)
Q Consensus 229 vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~------a~~iTPVPGGVGp~T~a~L~~n~v~a~ 293 (299)
++. -...|-.+.|++++-..... ...+--|-|-.|.=|+.-|+.++++.+
T Consensus 87 ~~~---------------a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~ 142 (488)
T PRK03369 87 LAA---------------AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAA 142 (488)
T ss_pred HHH---------------HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence 000 00012257777776311100 001223568899999999999998764
No 183
>PRK08507 prephenate dehydrogenase; Validated
Probab=96.36 E-value=0.008 Score=55.72 Aligned_cols=70 Identities=19% Similarity=0.301 Sum_probs=51.4
Q ss_pred EEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCC---------------CChhhhccCCcEEEEecCCCCc---CC--C
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHT---------------TDPESIVREADIVIAAAGQAMM---IK--G 226 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t---------------~~l~~~~~~ADIVIsa~g~p~~---i~--~ 226 (299)
++.|||.|.+ |.+++..|.+.|. +|+.++++. .+..+. .+||+||.+++.... +. .
T Consensus 2 ~I~iIG~G~m-G~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~-~~aD~Vilavp~~~~~~~~~~l~ 79 (275)
T PRK08507 2 KIGIIGLGLM-GGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEEL-KKCDVIFLAIPVDAIIEILPKLL 79 (275)
T ss_pred EEEEEccCHH-HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHH-hcCCEEEEeCcHHHHHHHHHHHh
Confidence 6899998875 9999999998885 688776531 233443 459999999985432 21 1
Q ss_pred CccCCCeEEEEeecc
Q 022295 227 SWIKPGAAVIDVGTN 241 (299)
Q Consensus 227 ~~vk~gavVIDvg~~ 241 (299)
. ++++++|+|+|..
T Consensus 80 ~-l~~~~iv~d~gs~ 93 (275)
T PRK08507 80 D-IKENTTIIDLGST 93 (275)
T ss_pred c-cCCCCEEEECccc
Confidence 2 7889999999874
No 184
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.35 E-value=0.0078 Score=56.62 Aligned_cols=72 Identities=21% Similarity=0.312 Sum_probs=54.2
Q ss_pred EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccC---CcEEEEecCCCCc----CC--
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVRE---ADIVIAAAGQAMM----IK-- 225 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~---ADIVIsa~g~p~~----i~-- 225 (299)
+|.+||.|.+ |.+++..|++.|..|++++++. .+..+..+. +|+||+++..+.. +.
T Consensus 2 ~Ig~IGlG~M-G~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~l 80 (301)
T PRK09599 2 QLGMIGLGRM-GGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDEL 80 (301)
T ss_pred EEEEEcccHH-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHHH
Confidence 6899999886 9999999999999999998752 234455554 6999999886532 21
Q ss_pred CCccCCCeEEEEeecc
Q 022295 226 GSWIKPGAAVIDVGTN 241 (299)
Q Consensus 226 ~~~vk~gavVIDvg~~ 241 (299)
.+.+++|.++||.+..
T Consensus 81 ~~~l~~g~ivid~st~ 96 (301)
T PRK09599 81 APLLSPGDIVIDGGNS 96 (301)
T ss_pred HhhCCCCCEEEeCCCC
Confidence 2446788999998754
No 185
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.35 E-value=0.0065 Score=59.83 Aligned_cols=122 Identities=19% Similarity=0.284 Sum_probs=68.6
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCCh---hhhccCCcEEEEecC-CCCcCCCCccC--CCeEEEEe
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDP---ESIVREADIVIAAAG-QAMMIKGSWIK--PGAAVIDV 238 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l---~~~~~~ADIVIsa~g-~p~~i~~~~vk--~gavVIDv 238 (299)
++||+++|+|.|+ .|+++|..|+++|++|+++.++.... .+.+....+-+. .| .+. +.+. ...+|.--
T Consensus 3 ~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~-~~~~~~----~~~~~~~d~vV~s~ 76 (447)
T PRK02472 3 YQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVI-CGSHPL----ELLDEDFDLMVKNP 76 (447)
T ss_pred cCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEE-eCCCCH----HHhcCcCCEEEECC
Confidence 6799999999999 59999999999999999997653211 122222222111 11 110 1111 23344444
Q ss_pred eccCCCC---CccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHH
Q 022295 239 GTNAVDD---STKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGA 293 (299)
Q Consensus 239 g~~~~~~---~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~ 293 (299)
|+++... .-...|-++.++.++....... .+.-|-|-.|.=|+..|+.++++.+
T Consensus 77 gi~~~~~~~~~a~~~~i~v~~~~el~~~~~~~-~~I~VTGT~GKTTTt~ll~~iL~~~ 133 (447)
T PRK02472 77 GIPYTNPMVEKALEKGIPIITEVELAYLISEA-PIIGITGSNGKTTTTTLIGEMLKAG 133 (447)
T ss_pred CCCCCCHHHHHHHHCCCcEEeHHHHHHHhcCC-CEEEEeCCCchHHHHHHHHHHHHHC
Confidence 4443210 0000122567776653221111 1223668899999999999998754
No 186
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.33 E-value=0.0075 Score=59.46 Aligned_cols=37 Identities=32% Similarity=0.516 Sum_probs=33.5
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT 201 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t 201 (299)
++++|+|+|+|.|. .|+++|..|+++|+.|+++++..
T Consensus 2 ~~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 2 ELKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCc
Confidence 46899999999999 69999999999999999998763
No 187
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.31 E-value=0.012 Score=56.59 Aligned_cols=74 Identities=22% Similarity=0.413 Sum_probs=55.5
Q ss_pred CcEEEEEcCCccchHHHHHHHhhC-C-CeEEEEcCC---------------------CCChhhhccCCcEEEEecCCC-C
Q 022295 167 GKRAVVVGRSNIVGLPVSLLLLKA-D-ATVTIVHSH---------------------TTDPESIVREADIVIAAAGQA-M 222 (299)
Q Consensus 167 gk~vvViG~s~~vG~pla~lL~~~-g-atVtv~~~~---------------------t~~l~~~~~~ADIVIsa~g~p-~ 222 (299)
-+...|||.|.- ++.-++.+... + -+|.|..++ ..+.++.++.|||||++|.+. .
T Consensus 130 a~~laiIGaG~q-A~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~P 208 (330)
T COG2423 130 ASTLAIIGAGAQ-ARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTEP 208 (330)
T ss_pred CcEEEEECCcHH-HHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCCC
Confidence 467888887664 77666655543 2 366666543 246678999999999999954 4
Q ss_pred cCCCCccCCCeEEEEeecc
Q 022295 223 MIKGSWIKPGAAVIDVGTN 241 (299)
Q Consensus 223 ~i~~~~vk~gavVIDvg~~ 241 (299)
+++.+|++||+.|.=+|.+
T Consensus 209 il~~~~l~~G~hI~aiGad 227 (330)
T COG2423 209 VLKAEWLKPGTHINAIGAD 227 (330)
T ss_pred eecHhhcCCCcEEEecCCC
Confidence 7899999999999999965
No 188
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.29 E-value=0.037 Score=55.34 Aligned_cols=51 Identities=25% Similarity=0.250 Sum_probs=43.2
Q ss_pred cccCCHHHHHHHHH----hhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEE
Q 022295 146 FLPCTPKGCLELLK----RSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIV 197 (299)
Q Consensus 146 ~~PcT~~av~~ll~----~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~ 197 (299)
-.+.|++|+...++ +.+.+++|++|+|.|.|+ ||..+|.+|.+.|++|+.+
T Consensus 207 r~~aTg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGn-VG~~~A~~L~~~GakVVav 261 (445)
T PRK09414 207 RTEATGYGLVYFAEEMLKARGDSFEGKRVVVSGSGN-VAIYAIEKAQQLGAKVVTC 261 (445)
T ss_pred CCCcccHHHHHHHHHHHHhcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEE
Confidence 45789988766655 458899999999999988 5999999999999987766
No 189
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.28 E-value=0.008 Score=56.08 Aligned_cols=72 Identities=21% Similarity=0.329 Sum_probs=53.3
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC--------------------------------------CCChhhhcc
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH--------------------------------------TTDPESIVR 209 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~--------------------------------------t~~l~~~~~ 209 (299)
++|.|||.|.+ |.++|..|++.|..|++++++ +.++.+.++
T Consensus 2 ~~V~VIG~G~m-G~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 2 EKLVVVGAGVM-GRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred cEEEEECccHH-HHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 57999998775 999999999999999999753 234557789
Q ss_pred CCcEEEEecCCCCc-----CC--CCccCCCeEE-EEeec
Q 022295 210 EADIVIAAAGQAMM-----IK--GSWIKPGAAV-IDVGT 240 (299)
Q Consensus 210 ~ADIVIsa~g~p~~-----i~--~~~vk~gavV-IDvg~ 240 (299)
+||+||.+++...- +. .+.+++++++ +|.+.
T Consensus 81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 99999999885431 11 2345777755 56554
No 190
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.27 E-value=0.0071 Score=57.45 Aligned_cols=72 Identities=17% Similarity=0.253 Sum_probs=55.4
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC----------------------------CChhhhccCCcEEEEecC
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT----------------------------TDPESIVREADIVIAAAG 219 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t----------------------------~~l~~~~~~ADIVIsa~g 219 (299)
.+|.|||.|.+ |.+++..|++.|..|++.+++. .++.+.++++|+||.++.
T Consensus 5 m~I~iIG~G~m-G~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 5 MRVAVLGAGAW-GTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CeEEEECcCHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 47999998875 9999999999999999997641 134466788999999998
Q ss_pred CCCcCC-CCccCCCeEEEEeec
Q 022295 220 QAMMIK-GSWIKPGAAVIDVGT 240 (299)
Q Consensus 220 ~p~~i~-~~~vk~gavVIDvg~ 240 (299)
...+-. -+.++++.++|++..
T Consensus 84 ~~~~~~v~~~l~~~~~vi~~~~ 105 (328)
T PRK14618 84 SKALRETLAGLPRALGYVSCAK 105 (328)
T ss_pred hHHHHHHHHhcCcCCEEEEEee
Confidence 764311 134678899999864
No 191
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=96.25 E-value=0.12 Score=50.96 Aligned_cols=196 Identities=15% Similarity=0.173 Sum_probs=117.4
Q ss_pred eeccHHHHHHHHHHHHHHHHHHHhcC--CC-----CcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCCC--
Q 022295 11 IIDGKAVAQTIRSEIAEEVRLLSEKY--GK-----VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVS-- 81 (299)
Q Consensus 11 il~gk~~a~~i~~~~~~~v~~l~~~~--~~-----~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~-- 81 (299)
+|+-..+.++=.+.|-+...++++.. +. ..++++.++= .|+...-. +=..++.++|.++.++.-. +.+
T Consensus 23 lL~~~dls~~ei~~Ll~~A~~~k~~~~~~~~~~~L~~~~~~~lF~-epSTRTR~-SFE~A~~~LGg~~i~l~~~-~ss~~ 99 (395)
T PRK07200 23 FLLTWEKTPDELKAVLDVADALRALREENISTKVFNSGLGISVFR-DNSTRTRF-SYASACNLLGLEVQDLDEG-KSQIA 99 (395)
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhhhhcCCccccccCCeEEEEEc-CCCchhHH-HHHHHHHHcCCCEEEcCCc-cccCC
Confidence 55655565544444444444444321 11 1233433333 34444444 4578899999998877532 111
Q ss_pred -HHHHHHHHHHhcCCCCceEEEEeCCC---CCCCCHHHHHccCCc--cccC-CCCC-cccccccccCCCCCccccCCHHH
Q 022295 82 -EAELISKVHELNVMPDVHGILVQLPL---PKHINEEKVLGEISL--EKDV-DGFH-PLNIGKLAMKGRDPLFLPCTPKG 153 (299)
Q Consensus 82 -~~el~~~i~~ln~d~~v~GIlvq~Pl---p~~i~~~~i~~~i~p--~KDV-Dg~~-~~n~g~l~~g~~~~~~~PcT~~a 153 (299)
-|-+.+.++-|+.= +|+|.+-.|- ..+-..+++.+...- .++| -..- .+|.+ .+...||=+.+
T Consensus 100 kGEsl~DTarvLs~y--~D~IviR~~~~~g~~~~~~~ela~~~~~~~~~~~~~~~pPVINa~-------~~~~HPtQaLa 170 (395)
T PRK07200 100 HGETVRETANMISFM--ADVIGIRDDMYIGKGNAYMREVGAAVDDGYKQGVLPQRPTLVNLQ-------CDIDHPTQSMA 170 (395)
T ss_pred CCCCHHHHHHHHHHh--CCEEEEecCcccccccHHHHHHHHHhhhhcccccccCCCeEEECC-------CCCCCcHHHHH
Confidence 14566677766663 8899999774 222212222222110 1111 1222 35642 23568998888
Q ss_pred -HHHHHHhhCC--CcCCcEEEEEc-------CCccchHHHHHHHhhCCCeEEEEcCC-----------------------
Q 022295 154 -CLELLKRSGV--TIKGKRAVVVG-------RSNIVGLPVSLLLLKADATVTIVHSH----------------------- 200 (299)
Q Consensus 154 -v~~ll~~~~~--~l~gk~vvViG-------~s~~vG~pla~lL~~~gatVtv~~~~----------------------- 200 (299)
++.+.++.|- .++|++|+++| ++..|.+.++.+|...|++|++|+-.
T Consensus 171 Dl~TI~E~~G~~~~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i 250 (395)
T PRK07200 171 DLLHLIEHFGGLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSF 250 (395)
T ss_pred HHHHHHHHhCCCcccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeE
Confidence 5666666664 38999999985 45567899999999999999999632
Q ss_pred --CCChhhhccCCcEEEEec
Q 022295 201 --TTDPESIVREADIVIAAA 218 (299)
Q Consensus 201 --t~~l~~~~~~ADIVIsa~ 218 (299)
+.|+.+.++.||+|.+-+
T Consensus 251 ~~~~d~~eav~~aDvVYtd~ 270 (395)
T PRK07200 251 RQVNSMEEAFKDADIVYPKS 270 (395)
T ss_pred EEEcCHHHHhCCCCEEEEcC
Confidence 246778999999999753
No 192
>PLN02688 pyrroline-5-carboxylate reductase
Probab=96.25 E-value=0.0089 Score=54.82 Aligned_cols=68 Identities=13% Similarity=0.322 Sum_probs=49.8
Q ss_pred EEEEEcCCccchHHHHHHHhhCCC----eEEEE-cCCC--------------CChhhhccCCcEEEEecCCCCcC----C
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADA----TVTIV-HSHT--------------TDPESIVREADIVIAAAGQAMMI----K 225 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~ga----tVtv~-~~~t--------------~~l~~~~~~ADIVIsa~g~p~~i----~ 225 (299)
+|.+||.|.+ |.+++..|.+.|. +|+++ +++. .+..+.++++|+||.++ .|..+ .
T Consensus 2 kI~~IG~G~m-G~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v-~~~~~~~vl~ 79 (266)
T PLN02688 2 RVGFIGAGKM-AEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAV-KPQVVKDVLT 79 (266)
T ss_pred eEEEECCcHH-HHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEE-CcHHHHHHHH
Confidence 5899998886 9999999999887 88888 6531 24456788999999999 45421 1
Q ss_pred --CCccCCCeEEEEe
Q 022295 226 --GSWIKPGAAVIDV 238 (299)
Q Consensus 226 --~~~vk~gavVIDv 238 (299)
...++++.+||.+
T Consensus 80 ~l~~~~~~~~~iIs~ 94 (266)
T PLN02688 80 ELRPLLSKDKLLVSV 94 (266)
T ss_pred HHHhhcCCCCEEEEe
Confidence 1345677777765
No 193
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.23 E-value=0.011 Score=58.18 Aligned_cols=71 Identities=31% Similarity=0.477 Sum_probs=54.1
Q ss_pred EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC----------------------------------CChhhhccCCcEE
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT----------------------------------TDPESIVREADIV 214 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t----------------------------------~~l~~~~~~ADIV 214 (299)
+|.|||.|. +|.++|..|++.|.+|++++++. .+..+.+++||+|
T Consensus 2 kI~vIGlG~-~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 2 KIAVIGLGY-VGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred EEEEECCCc-hhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 689999887 59999999999999999997542 1233567889999
Q ss_pred EEecCCCCc---------CC------CCccCCCeEEEEeec
Q 022295 215 IAAAGQAMM---------IK------GSWIKPGAAVIDVGT 240 (299)
Q Consensus 215 Isa~g~p~~---------i~------~~~vk~gavVIDvg~ 240 (299)
|.+++.|.- +. ...+++|.+|||.+.
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~ST 121 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLEST 121 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 999997731 11 123578999998874
No 194
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=96.23 E-value=0.0078 Score=56.47 Aligned_cols=70 Identities=20% Similarity=0.383 Sum_probs=53.4
Q ss_pred EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC----------------------------CChhhhccCCcEEEEecCC
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT----------------------------TDPESIVREADIVIAAAGQ 220 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t----------------------------~~l~~~~~~ADIVIsa~g~ 220 (299)
+|.|||.|.+ |.+++..|++.|..|+++++.. .+..+.++++|+||.++..
T Consensus 3 kI~iiG~G~m-G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 3 KIAVLGAGSW-GTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred EEEEECCCHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 6999998775 9999999999999999997541 1344567899999999986
Q ss_pred CCc---CC--CCccCCCeEEEEee
Q 022295 221 AMM---IK--GSWIKPGAAVIDVG 239 (299)
Q Consensus 221 p~~---i~--~~~vk~gavVIDvg 239 (299)
..+ +. ..+++++++||++.
T Consensus 82 ~~~~~v~~~l~~~~~~~~~vi~~~ 105 (325)
T PRK00094 82 QALREVLKQLKPLLPPDAPIVWAT 105 (325)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEe
Confidence 432 11 13567899999993
No 195
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=96.22 E-value=0.0095 Score=49.63 Aligned_cols=71 Identities=27% Similarity=0.375 Sum_probs=48.0
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC----------------CChhhhccCCcEEEEecCCCC-------cC
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT----------------TDPESIVREADIVIAAAGQAM-------MI 224 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t----------------~~l~~~~~~ADIVIsa~g~p~-------~i 224 (299)
-+|.|||+|. ||..|+.+|.+.|..|.-+.+++ .++.+.+++||++|-+++.-. +-
T Consensus 11 l~I~iIGaGr-VG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~~va~~La 89 (127)
T PF10727_consen 11 LKIGIIGAGR-VGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIAEVAEQLA 89 (127)
T ss_dssp -EEEEECTSC-CCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHHHHHHHHH
T ss_pred cEEEEECCCH-HHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHHHHHHHHH
Confidence 5899999988 59999999999999988887653 245678999999999998532 22
Q ss_pred CCCccCCCeEEEEee
Q 022295 225 KGSWIKPGAAVIDVG 239 (299)
Q Consensus 225 ~~~~vk~gavVIDvg 239 (299)
..-.+++|.+|+=..
T Consensus 90 ~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 90 QYGAWRPGQIVVHTS 104 (127)
T ss_dssp CC--S-TT-EEEES-
T ss_pred HhccCCCCcEEEECC
Confidence 223467888887654
No 196
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.20 E-value=0.016 Score=52.74 Aligned_cols=53 Identities=26% Similarity=0.357 Sum_probs=44.6
Q ss_pred cccCCHHHHHHHHH----hhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEE-EEcC
Q 022295 146 FLPCTPKGCLELLK----RSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVT-IVHS 199 (299)
Q Consensus 146 ~~PcT~~av~~ll~----~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVt-v~~~ 199 (299)
..|.|+.|+...++ +.+.+++|++|+|.|.|. ||+.++.+|.+.|++|+ ++++
T Consensus 6 ~~~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~-VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 6 REEATGRGVAYATREALKKLGIGLAGARVAIQGFGN-VGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CCccchHHHHHHHHHHHHhcCCCccCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEECC
Confidence 45788888777665 457789999999999877 59999999999999877 8776
No 197
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.19 E-value=0.035 Score=55.48 Aligned_cols=50 Identities=26% Similarity=0.296 Sum_probs=42.2
Q ss_pred cccCCHHHHHHHH----HhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEE
Q 022295 146 FLPCTPKGCLELL----KRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTI 196 (299)
Q Consensus 146 ~~PcT~~av~~ll----~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv 196 (299)
--+.|++|++..+ ++.|.+++|++|+|=|.|+ ||..+|..|.+.||+|+.
T Consensus 203 r~~ATg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGn-VG~~aA~~L~e~GakvVa 256 (445)
T PRK14030 203 RPEATGFGALYFVHQMLETKGIDIKGKTVAISGFGN-VAWGAATKATELGAKVVT 256 (445)
T ss_pred CCCccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEE
Confidence 3467999876554 5568899999999999877 599999999999998776
No 198
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=96.17 E-value=0.0063 Score=57.27 Aligned_cols=72 Identities=14% Similarity=0.219 Sum_probs=54.0
Q ss_pred EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CCh---hhhccCCcEEEEecCCCC---cCC--C
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDP---ESIVREADIVIAAAGQAM---MIK--G 226 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l---~~~~~~ADIVIsa~g~p~---~i~--~ 226 (299)
+|.|||.|.+ |.+++..|.+.|.+|++.+++. .++ .+.+.++|+||.+++... ++. .
T Consensus 2 ~Ig~IGlG~m-G~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l~ 80 (298)
T TIGR00872 2 QLGLIGLGRM-GANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEELA 80 (298)
T ss_pred EEEEEcchHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHHH
Confidence 6899999886 9999999999999999988752 122 234567899999988642 121 1
Q ss_pred CccCCCeEEEEeecc
Q 022295 227 SWIKPGAAVIDVGTN 241 (299)
Q Consensus 227 ~~vk~gavVIDvg~~ 241 (299)
..+++|.+|||.+..
T Consensus 81 ~~l~~g~ivid~st~ 95 (298)
T TIGR00872 81 PTLEKGDIVIDGGNS 95 (298)
T ss_pred hhCCCCCEEEECCCC
Confidence 346889999998765
No 199
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.17 E-value=0.017 Score=57.40 Aligned_cols=122 Identities=20% Similarity=0.222 Sum_probs=73.5
Q ss_pred cCCcEEEEEcCCccchHH-HHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCcc-CCCeEEEEeeccC
Q 022295 165 IKGKRAVVVGRSNIVGLP-VSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWI-KPGAAVIDVGTNA 242 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~p-la~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~v-k~gavVIDvg~~~ 242 (299)
.++|++.|+|.|+. |+. +|++|.++|++|++++.+.....+.+++..+.+.. |.+ ++.+ ....+|+--|+++
T Consensus 5 ~~~~~v~viG~G~s-G~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~-~~~----~~~~~~~d~vv~spgi~~ 78 (461)
T PRK00421 5 RRIKRIHFVGIGGI-GMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFI-GHD----AENIKDADVVVYSSAIPD 78 (461)
T ss_pred CCCCEEEEEEEchh-hHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeC-CCC----HHHCCCCCEEEECCCCCC
Confidence 46789999999997 999 79999999999999987543222224333433322 221 1112 1244555555554
Q ss_pred CCCC---ccCCCceeeccCCchh-hhhhhceeccCCCCccHHHHHHHHHHHHHHH
Q 022295 243 VDDS---TKKSGYRLVGDVDFHE-ACKVAGCVTPVPGGVGPMTVAMLLRNTLDGA 293 (299)
Q Consensus 243 ~~~~---~~~~g~kl~GDvdf~~-~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~ 293 (299)
.... -...|-++.++.++.. ..+... +--|-|=-|.=|+..|+.++++.+
T Consensus 79 ~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~-~I~ITGTnGKTTTt~ll~~iL~~~ 132 (461)
T PRK00421 79 DNPELVAARELGIPVVRRAEMLAELMRFRT-SIAVAGTHGKTTTTSLLAHVLAEA 132 (461)
T ss_pred CCHHHHHHHHCCCcEEeHHHHHHHHHccCc-EEEEECCCCHHHHHHHHHHHHHhc
Confidence 2110 0001225788888742 221111 223558889999999999998765
No 200
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=96.17 E-value=0.01 Score=57.17 Aligned_cols=70 Identities=21% Similarity=0.309 Sum_probs=53.6
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCCCC---cCCC-
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQAM---MIKG- 226 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~p~---~i~~- 226 (299)
++||+|.|||.|.+ |.++|..|...|..|.+..+.. .+..+.+++||+|+.+++... ++..
T Consensus 15 L~gktIgIIG~Gsm-G~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~~~V~~~~ 93 (330)
T PRK05479 15 IKGKKVAIIGYGSQ-GHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQAEVYEEE 93 (330)
T ss_pred hCCCEEEEEeeHHH-HHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHHHHHHHHH
Confidence 68999999999886 9999999999999988875431 256678999999999998432 2211
Q ss_pred --CccCCCeEE
Q 022295 227 --SWIKPGAAV 235 (299)
Q Consensus 227 --~~vk~gavV 235 (299)
..+++|++|
T Consensus 94 I~~~Lk~g~iL 104 (330)
T PRK05479 94 IEPNLKEGAAL 104 (330)
T ss_pred HHhcCCCCCEE
Confidence 346778766
No 201
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.16 E-value=0.012 Score=55.73 Aligned_cols=54 Identities=22% Similarity=0.430 Sum_probs=42.4
Q ss_pred cEEEEEcCCccchHHHHHHHhhCC--CeEEEEcCCCC------------------------ChhhhccCCcEEEEecCCC
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKAD--ATVTIVHSHTT------------------------DPESIVREADIVIAAAGQA 221 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~g--atVtv~~~~t~------------------------~l~~~~~~ADIVIsa~g~p 221 (299)
++|.|||.|+ ||..++..|+.+| .++++++++.. .-.+.+++||+||.++|.|
T Consensus 1 ~kI~IIGaG~-vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~ 79 (306)
T cd05291 1 RKVVIIGAGH-VGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAP 79 (306)
T ss_pred CEEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCC
Confidence 4799999977 5999999999998 37999976421 1124578999999999976
Q ss_pred C
Q 022295 222 M 222 (299)
Q Consensus 222 ~ 222 (299)
.
T Consensus 80 ~ 80 (306)
T cd05291 80 Q 80 (306)
T ss_pred C
Confidence 3
No 202
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.11 E-value=0.0095 Score=54.31 Aligned_cols=60 Identities=10% Similarity=0.277 Sum_probs=44.6
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-CCCh-----------------hhhccCCcEEEEecCCCCc
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-TTDP-----------------ESIVREADIVIAAAGQAMM 223 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-t~~l-----------------~~~~~~ADIVIsa~g~p~~ 223 (299)
++++|++|+|||.|. |+.-=+..|++.||.|||+... ++++ .+.+..+++||.||+.+.+
T Consensus 21 l~~~~~~VLVVGGG~-VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~v 98 (223)
T PRK05562 21 LLSNKIKVLIIGGGK-AAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEKL 98 (223)
T ss_pred EECCCCEEEEECCCH-HHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHHH
Confidence 456799999999777 4766677888899999999533 1111 1347789999999987653
No 203
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=96.07 E-value=0.027 Score=55.57 Aligned_cols=94 Identities=23% Similarity=0.299 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHhhC--CCcCCcEEEEEcC----------------CccchHHHHHHHhhCCCeEEEEcCCCC--------
Q 022295 149 CTPKGCLELLKRSG--VTIKGKRAVVVGR----------------SNIVGLPVSLLLLKADATVTIVHSHTT-------- 202 (299)
Q Consensus 149 cT~~av~~ll~~~~--~~l~gk~vvViG~----------------s~~vG~pla~lL~~~gatVtv~~~~t~-------- 202 (299)
..|.-++..+++.- -+++||+|+|-|+ ||..|+.+|..|..+||+|+++++...
T Consensus 168 ~~~~~I~~~~~~~~~~~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~~~~~~~~ 247 (399)
T PRK05579 168 AEPEEIVAAAERALSPKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNLPTPAGVK 247 (399)
T ss_pred CCHHHHHHHHHHHhhhcccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCccccCCCCcE
Confidence 34666666665432 4689999999998 776799999999999999999875421
Q ss_pred --------Ch----hhhccCCcEEEEecCCCCcCCC----CccCCC--eEEEEeeccC
Q 022295 203 --------DP----ESIVREADIVIAAAGQAMMIKG----SWIKPG--AAVIDVGTNA 242 (299)
Q Consensus 203 --------~l----~~~~~~ADIVIsa~g~p~~i~~----~~vk~g--avVIDvg~~~ 242 (299)
++ .+...+.|++|.++|...+-.. .=+|.+ ...+.+--||
T Consensus 248 ~~dv~~~~~~~~~v~~~~~~~DilI~~Aav~d~~~~~~~~~Kikk~~~~~~l~L~~~p 305 (399)
T PRK05579 248 RIDVESAQEMLDAVLAALPQADIFIMAAAVADYRPATVAEGKIKKGEGELTLELVPNP 305 (399)
T ss_pred EEccCCHHHHHHHHHHhcCCCCEEEEcccccccccccccccCccCCCCCceEEEEeCc
Confidence 11 1334578999988886544221 223432 2455655554
No 204
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.07 E-value=0.0077 Score=53.08 Aligned_cols=53 Identities=30% Similarity=0.428 Sum_probs=35.8
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC----------------------------------CCChhhhccCCcE
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH----------------------------------TTDPESIVREADI 213 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~----------------------------------t~~l~~~~~~ADI 213 (299)
.+|+|+|.|- ||-|+|..|++.|.+|+-++.+ +.+..+.+++||+
T Consensus 1 M~I~ViGlGy-vGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv 79 (185)
T PF03721_consen 1 MKIAVIGLGY-VGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADV 79 (185)
T ss_dssp -EEEEE--ST-THHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SE
T ss_pred CEEEEECCCc-chHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccce
Confidence 4799999877 5999999999999999999743 2345566888898
Q ss_pred EEEecCCC
Q 022295 214 VIAAAGQA 221 (299)
Q Consensus 214 VIsa~g~p 221 (299)
+|.+++.|
T Consensus 80 ~~I~VpTP 87 (185)
T PF03721_consen 80 VFICVPTP 87 (185)
T ss_dssp EEE----E
T ss_pred EEEecCCC
Confidence 88888766
No 205
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.01 E-value=0.02 Score=55.45 Aligned_cols=112 Identities=26% Similarity=0.314 Sum_probs=68.7
Q ss_pred CCcEEEEEcCCccchHHHHHHHhh-CCCe---EEEEcCCC----------C-------ChhhhccCCcEEEEecCCCC--
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLLK-ADAT---VTIVHSHT----------T-------DPESIVREADIVIAAAGQAM-- 222 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~~-~gat---Vtv~~~~t----------~-------~l~~~~~~ADIVIsa~g~p~-- 222 (299)
++.+|.|||+++.||+-+..+|.+ .+.. +..+.|.. . +. +..++.|++|.|+|.--
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~-~~~~~~Divf~a~~~~~s~ 82 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKI-NSFEGVDIAFFSAGGEVSR 82 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCH-HHhcCCCEEEECCChHHHH
Confidence 346899999999999999999994 5555 54454331 0 11 23478999999986421
Q ss_pred cCCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHH
Q 022295 223 MIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAML 285 (299)
Q Consensus 223 ~i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L 285 (299)
-+-+...+.|+.|||.+..+.-++.-+ -.+-.|+-+...+..+ +-..|| -.|++++
T Consensus 83 ~~~~~~~~~G~~VID~Ss~fR~~~~vp---lvvPEvN~e~i~~~~~-iIanPn---C~tt~~~ 138 (347)
T PRK06728 83 QFVNQAVSSGAIVIDNTSEYRMAHDVP---LVVPEVNAHTLKEHKG-IIAVPN---CSALQMV 138 (347)
T ss_pred HHHHHHHHCCCEEEECchhhcCCCCCC---eEeCCcCHHHHhccCC-EEECCC---CHHHHHH
Confidence 122233467999999998765333211 2344455444444223 334664 5566666
No 206
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.98 E-value=0.015 Score=57.06 Aligned_cols=76 Identities=21% Similarity=0.310 Sum_probs=55.5
Q ss_pred CCcEEEEEcCCccchHHHHHHHhhC-CCeEEEEcCCC---------------C------Chh-hhccCCcEEEEecCCC-
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLLKA-DATVTIVHSHT---------------T------DPE-SIVREADIVIAAAGQA- 221 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~~~-gatVtv~~~~t---------------~------~l~-~~~~~ADIVIsa~g~p- 221 (299)
..++|.|+|++|.+|+-+..+|.++ +.+++...++. . ++. +.++++|+||.|+|.-
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~~ 116 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHGT 116 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHHH
Confidence 4579999999999999999999988 67777765431 0 111 1247799999999852
Q ss_pred --CcCCCCccCCCeEEEEeeccCC
Q 022295 222 --MMIKGSWIKPGAAVIDVGTNAV 243 (299)
Q Consensus 222 --~~i~~~~vk~gavVIDvg~~~~ 243 (299)
++++. + +.|..|||++..+.
T Consensus 117 s~~i~~~-~-~~g~~VIDlSs~fR 138 (381)
T PLN02968 117 TQEIIKA-L-PKDLKIVDLSADFR 138 (381)
T ss_pred HHHHHHH-H-hCCCEEEEcCchhc
Confidence 23443 3 57899999997754
No 207
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=95.94 E-value=0.012 Score=52.84 Aligned_cols=69 Identities=25% Similarity=0.311 Sum_probs=49.4
Q ss_pred EEEEEc-CCccchHHHHHHHhhCCCeEEEEcCCC-------------------------CChhhhccCCcEEEEecCCCC
Q 022295 169 RAVVVG-RSNIVGLPVSLLLLKADATVTIVHSHT-------------------------TDPESIVREADIVIAAAGQAM 222 (299)
Q Consensus 169 ~vvViG-~s~~vG~pla~lL~~~gatVtv~~~~t-------------------------~~l~~~~~~ADIVIsa~g~p~ 222 (299)
++.||| .|. +|..++..|.+.|..|++.+++. .+..+.+.++|+||.++....
T Consensus 2 kI~IIGG~G~-mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~ 80 (219)
T TIGR01915 2 KIAVLGGTGD-QGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH 80 (219)
T ss_pred EEEEEcCCCH-HHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence 689998 555 59999999999999998886542 123456789999999998654
Q ss_pred c---CC--CCccCCCeEEEEee
Q 022295 223 M---IK--GSWIKPGAAVIDVG 239 (299)
Q Consensus 223 ~---i~--~~~vk~gavVIDvg 239 (299)
+ +. ...++ +.+|||+.
T Consensus 81 ~~~~l~~l~~~l~-~~vvI~~~ 101 (219)
T TIGR01915 81 VLKTLESLRDELS-GKLVISPV 101 (219)
T ss_pred HHHHHHHHHHhcc-CCEEEEec
Confidence 3 11 12233 47899984
No 208
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=95.93 E-value=0.033 Score=52.78 Aligned_cols=139 Identities=24% Similarity=0.261 Sum_probs=93.4
Q ss_pred HHHHHHHHcCCceeeecCC-----CCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHccCCccccCCCCCccc
Q 022295 59 MKRKACAEVGIKSFDIDLP-----EQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLN 133 (299)
Q Consensus 59 ~k~k~~~~~Gi~~~~~~l~-----~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~i~p~KDVDg~~~~n 133 (299)
+=.-++..+|-+..++.=. ..-+-+|-...+.++ +|||++--. +|- .++.+.-.-.| -..|
T Consensus 61 SFeva~~qlGg~~~~l~~~~~Qlgr~Esi~DTArVLsr~-----~D~I~~R~~--~~~----~ve~lA~~s~V---PViN 126 (310)
T COG0078 61 SFEVAATQLGGHAIYLGPGDSQLGRGESIKDTARVLSRM-----VDAIMIRGF--SHE----TLEELAKYSGV---PVIN 126 (310)
T ss_pred hHHHHHHHcCCCeEEeCCCccccCCCCcHHHHHHHHHhh-----hheEEEecc--cHH----HHHHHHHhCCC---ceEc
Confidence 3466788999998776421 111223444444444 889998654 222 22222111122 2223
Q ss_pred ccccccCCCCCccccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------
Q 022295 134 IGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH------------- 200 (299)
Q Consensus 134 ~g~l~~g~~~~~~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~------------- 200 (299)
| .++.+.||-..|=+-.++++.-.++|++++=+|-|+.|+..+....+..|..|+++.-.
T Consensus 127 ------g-LtD~~HP~Q~LADl~Ti~E~~g~l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~ 199 (310)
T COG0078 127 ------G-LTDEFHPCQALADLMTIKEHFGSLKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAK 199 (310)
T ss_pred ------c-cccccCcHHHHHHHHHHHHhcCcccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHH
Confidence 3 36778999999955555555555999999999999999999998888899999998632
Q ss_pred ------------CCChhhhccCCcEEEEec
Q 022295 201 ------------TTDPESIVREADIVIAAA 218 (299)
Q Consensus 201 ------------t~~l~~~~~~ADIVIsa~ 218 (299)
|.|..+.++.||+|.|-+
T Consensus 200 ~~a~~~g~~i~~t~d~~eAv~gADvvyTDv 229 (310)
T COG0078 200 ENAKESGGKITLTEDPEEAVKGADVVYTDV 229 (310)
T ss_pred HHHHhcCCeEEEecCHHHHhCCCCEEEecC
Confidence 457889999999999655
No 209
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.92 E-value=0.015 Score=49.55 Aligned_cols=52 Identities=29% Similarity=0.414 Sum_probs=43.5
Q ss_pred EEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-------------------ChhhhccCCcEEEEecCCC
Q 022295 170 AVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-------------------DPESIVREADIVIAAAGQA 221 (299)
Q Consensus 170 vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-------------------~l~~~~~~ADIVIsa~g~p 221 (299)
|+|+|+++.+|+.++..|+++|.+|+..-|+.. .+.+.++.+|.||.+.|.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~ 71 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPP 71 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCHST
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhhhhhh
Confidence 689999999999999999999999999876532 2447788999999998843
No 210
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=95.90 E-value=0.026 Score=54.20 Aligned_cols=94 Identities=19% Similarity=0.232 Sum_probs=63.7
Q ss_pred ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC---------------------hh
Q 022295 147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD---------------------PE 205 (299)
Q Consensus 147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~---------------------l~ 205 (299)
++|.....+..+.+.+..-.|++|+|.|.|. ||..+++++...|++|+++...... +.
T Consensus 164 l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~-vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~ 242 (360)
T PLN02586 164 LLCAGITVYSPMKYYGMTEPGKHLGVAGLGG-LGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMK 242 (360)
T ss_pred hhcchHHHHHHHHHhcccCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHH
Confidence 4555555566666555445799999999865 6999999999999987765432211 11
Q ss_pred hhccCCcEEEEecCCCCcC--CCCccCCCeEEEEeecc
Q 022295 206 SIVREADIVIAAAGQAMMI--KGSWIKPGAAVIDVGTN 241 (299)
Q Consensus 206 ~~~~~ADIVIsa~g~p~~i--~~~~vk~gavVIDvg~~ 241 (299)
+.+..+|+||-++|.+..+ --+.+++|..++.+|..
T Consensus 243 ~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG~~ 280 (360)
T PLN02586 243 AAIGTMDYIIDTVSAVHALGPLLGLLKVNGKLITLGLP 280 (360)
T ss_pred hhcCCCCEEEECCCCHHHHHHHHHHhcCCcEEEEeCCC
Confidence 2222479999999876533 23557888888888864
No 211
>PRK06199 ornithine cyclodeaminase; Validated
Probab=95.89 E-value=0.014 Score=57.06 Aligned_cols=76 Identities=22% Similarity=0.364 Sum_probs=52.8
Q ss_pred CcEEEEEcCCccchHHHHHHHhh-C-C-CeEEEEcCCC-----------------------CChhhhccCCcEEEEecCC
Q 022295 167 GKRAVVVGRSNIVGLPVSLLLLK-A-D-ATVTIVHSHT-----------------------TDPESIVREADIVIAAAGQ 220 (299)
Q Consensus 167 gk~vvViG~s~~vG~pla~lL~~-~-g-atVtv~~~~t-----------------------~~l~~~~~~ADIVIsa~g~ 220 (299)
-+++.|||.|.- ++.-+.++.. + + -+|.+.+++. .+.++.+++||||+++|+.
T Consensus 155 a~~l~iiG~G~Q-A~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s 233 (379)
T PRK06199 155 SKVVGLLGPGVM-GKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSG 233 (379)
T ss_pred CCEEEEECCcHH-HHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCC
Confidence 367777776664 7666665554 2 2 3666665431 2466889999999999974
Q ss_pred C-------CcCCCCccCCCeEEEEeeccCC
Q 022295 221 A-------MMIKGSWIKPGAAVIDVGTNAV 243 (299)
Q Consensus 221 p-------~~i~~~~vk~gavVIDvg~~~~ 243 (299)
. .++..+|++||+.|+=+|....
T Consensus 234 ~~~~~s~~Pv~~~~~lkpG~hv~~ig~~el 263 (379)
T PRK06199 234 ETGDPSTYPYVKREWVKPGAFLLMPAACRI 263 (379)
T ss_pred CCCCCCcCcEecHHHcCCCcEEecCCcccC
Confidence 2 4689999999999987776543
No 212
>PRK06949 short chain dehydrogenase; Provisional
Probab=95.85 E-value=0.013 Score=52.46 Aligned_cols=38 Identities=29% Similarity=0.449 Sum_probs=34.3
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
++++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus 5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45889999999998889999999999999999988764
No 213
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.85 E-value=0.047 Score=54.34 Aligned_cols=122 Identities=19% Similarity=0.196 Sum_probs=65.2
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-C---hhhhccCCcEEEEecCCCCcCCCCccC-CCeEEEEee
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-D---PESIVREADIVIAAAGQAMMIKGSWIK-PGAAVIDVG 239 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-~---l~~~~~~ADIVIsa~g~p~~i~~~~vk-~gavVIDvg 239 (299)
+.+|+|.|+|.|.. |+++|.+|.+.|++|++++.+.. . ..+.++...+.+..-..+ +++++ ...+|+--|
T Consensus 12 ~~~~~i~v~G~G~s-G~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~----~~~~~~~dlVV~Spg 86 (458)
T PRK01710 12 IKNKKVAVVGIGVS-NIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENY----LDKLDGFDVIFKTPS 86 (458)
T ss_pred hcCCeEEEEcccHH-HHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCC----hHHhccCCEEEECCC
Confidence 46899999999997 99999999999999999986531 1 111122223222211000 11111 123333333
Q ss_pred ccCCCCC---ccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHH
Q 022295 240 TNAVDDS---TKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDG 292 (299)
Q Consensus 240 ~~~~~~~---~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a 292 (299)
+++.... -...|-.+.++.++..-.... .+--|-|-.|.=||.-|+.+++..
T Consensus 87 i~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~-~vIaITGTnGKTTT~~ll~~iL~~ 141 (458)
T PRK01710 87 MRIDSPELVKAKEEGAYITSEMEEFIKYCPA-KVFGVTGSDGKTTTTTLIYEMLKE 141 (458)
T ss_pred CCCCchHHHHHHHcCCcEEechHHhhhhcCC-CEEEEECCCCHHHHHHHHHHHHHh
Confidence 3321000 000112455555532110011 122356889999999999998865
No 214
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=95.84 E-value=0.02 Score=51.81 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=39.2
Q ss_pred HHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC
Q 022295 153 GCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT 201 (299)
Q Consensus 153 av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t 201 (299)
++.+.+++.+.+++|++|+|.|.|+ ||+.++..|.++|+ .|.+++++.
T Consensus 9 ~~~~~~~~~~~~l~g~~vaIqGfGn-VG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 9 AMKAAMKHLGDSLEGLTVAVQGLGN-VGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred HHHHHHHHcCCCcCCCEEEEECCCH-HHHHHHHHHHHcCCEEEEEEcCCC
Confidence 3445556678899999999999888 59999999999987 677787654
No 215
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=95.83 E-value=0.51 Score=45.58 Aligned_cols=191 Identities=16% Similarity=0.170 Sum_probs=114.2
Q ss_pred eeeccHHHHHHHHHHHHHHHHHHHhcCC----CCcEEEEEEECCCcccHHHHHHHHHHHHHcCCceeeecCCCCC-----
Q 022295 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYG----KVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQV----- 80 (299)
Q Consensus 10 ~il~gk~~a~~i~~~~~~~v~~l~~~~~----~~P~Laii~vg~d~~s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~----- 80 (299)
.+|+-+.+.++=.+.|-+....++.... ..-.++.+-. .|+...-. +=..++.++|-++.++.-....
T Consensus 5 ~ll~i~dl~~~ei~~ll~~A~~~k~~~~~~~L~gk~l~~lF~--epSTRTR~-SFe~A~~~LGg~~i~l~~~~ss~~~e~ 81 (335)
T PRK04523 5 HFLNTQDWSRAELDALLTQAAAFKRNKLGSALKGKSIALVFF--NPSLRTRT-SFELGAFQLGGHAVVLQPGKDAWPIEF 81 (335)
T ss_pred CcCchhhCCHHHHHHHHHHHHHHHhcccCccCCCCEEEEEEc--CCCchhHH-HHHHHHHHcCCeEEEeCcccccchhhc
Confidence 3556666666555556555566654211 1113444332 44444443 4578899999998877543210
Q ss_pred ---------CHHHHHHHHHHhcCCCCceEEEEeCCCCCCCC-----HHHHHccCCccccCCCCCcccccccccCCCCCcc
Q 022295 81 ---------SEAELISKVHELNVMPDVHGILVQLPLPKHIN-----EEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLF 146 (299)
Q Consensus 81 ---------~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~-----~~~i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~ 146 (299)
..|.+.+.++-|+.- +|+|.+-.|-. +.+ +...++.+...-+ +-.+|. + .. +
T Consensus 82 ~~g~~~~~~kgEsl~Dtarvls~~--~D~iv~R~~~~-g~~~~~~~~~~~~~~~a~~s~---vPVINa-----~--~~-~ 147 (335)
T PRK04523 82 ELGAVMDGETEEHIREVARVLSRY--VDLIGVRAFPK-FVDWSKDRQDQVLNSFAKYST---VPVINM-----E--TI-T 147 (335)
T ss_pred ccccccCCCCCcCHHHHHHHHHHh--CcEEEEeCCcc-ccccccchhHHHHHHHHHhCC---CCEEEC-----C--CC-C
Confidence 125566676666653 78999887632 110 1122233322222 344564 2 23 7
Q ss_pred ccCCHHHHHHHH-HhhCCCc-CCcEEEEEcCC------ccchHHHHHHHhhCCCeEEEEcC-C-----------------
Q 022295 147 LPCTPKGCLELL-KRSGVTI-KGKRAVVVGRS------NIVGLPVSLLLLKADATVTIVHS-H----------------- 200 (299)
Q Consensus 147 ~PcT~~av~~ll-~~~~~~l-~gk~vvViG~s------~~vG~pla~lL~~~gatVtv~~~-~----------------- 200 (299)
.||=+.+=+-.+ ++.| ++ +|++++|++.| ..|.+.++.+|...|++|++|+- .
T Consensus 148 HPtQaLaDl~Ti~e~~g-~~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~ 226 (335)
T PRK04523 148 HPCQELAHALALQEHFG-TTLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAA 226 (335)
T ss_pred ChHHHHHHHHHHHHHhC-CccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHH
Confidence 899888844444 4554 57 89999887532 24688889999999999999975 2
Q ss_pred --------CCChhhhccCCcEEEEec
Q 022295 201 --------TTDPESIVREADIVIAAA 218 (299)
Q Consensus 201 --------t~~l~~~~~~ADIVIsa~ 218 (299)
+.++.+.+++||+|.+-.
T Consensus 227 ~~g~~~~~~~d~~ea~~~aDvvy~~~ 252 (335)
T PRK04523 227 ESGGSLTVSHDIDSAYAGADVVYAKS 252 (335)
T ss_pred HcCCeEEEEcCHHHHhCCCCEEEece
Confidence 245568899999998643
No 216
>PLN02712 arogenate dehydrogenase
Probab=95.81 E-value=0.018 Score=60.40 Aligned_cols=75 Identities=19% Similarity=0.288 Sum_probs=55.6
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------CChhhhc-cCCcEEEEecCCCC---cCC--
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------TDPESIV-READIVIAAAGQAM---MIK-- 225 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------~~l~~~~-~~ADIVIsa~g~p~---~i~-- 225 (299)
-+.+++.|||.|.+ |..++..|.+.|.+|++++++. .++.+.+ .+||+||.+++... ++.
T Consensus 50 ~~~~kIgIIG~G~m-G~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~l 128 (667)
T PLN02712 50 TTQLKIAIIGFGNY-GQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSIISTENVLKSL 128 (667)
T ss_pred CCCCEEEEEccCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHhh
Confidence 34578999998875 9999999999998998887642 1333434 46999999998422 222
Q ss_pred -CCccCCCeEEEEeec
Q 022295 226 -GSWIKPGAAVIDVGT 240 (299)
Q Consensus 226 -~~~vk~gavVIDvg~ 240 (299)
...+++|++|+|++.
T Consensus 129 ~~~~l~~g~iVvDv~S 144 (667)
T PLN02712 129 PLQRLKRNTLFVDVLS 144 (667)
T ss_pred hhhcCCCCeEEEECCC
Confidence 245789999999984
No 217
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.80 E-value=0.02 Score=53.42 Aligned_cols=72 Identities=22% Similarity=0.234 Sum_probs=52.9
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC---------------------------------------CCChhhhc
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH---------------------------------------TTDPESIV 208 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~---------------------------------------t~~l~~~~ 208 (299)
++|.|||.|.+ |..+|..|++.|..|+++..+ +.++.+.+
T Consensus 4 ~kIaViGaG~m-G~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 4 KNVTVAGAGVL-GSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred cEEEEECCCHH-HHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 57999998765 999999999999999999643 23555678
Q ss_pred cCCcEEEEecCCCC-----cCC--CCccCCCeEEEEeec
Q 022295 209 READIVIAAAGQAM-----MIK--GSWIKPGAAVIDVGT 240 (299)
Q Consensus 209 ~~ADIVIsa~g~p~-----~i~--~~~vk~gavVIDvg~ 240 (299)
++||+||.|++..- ++. ...+++++++.+...
T Consensus 83 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntS 121 (287)
T PRK08293 83 KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSS 121 (287)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcc
Confidence 99999999987431 111 134577777766443
No 218
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=95.79 E-value=0.019 Score=54.83 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=44.1
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCC
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQ 220 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~ 220 (299)
|+||++.|||.|.+ |.+++..|.+.|..|++..+.. .+..+.+++||+||.++.-
T Consensus 1 l~~kkIgiIG~G~m-G~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp 69 (314)
T TIGR00465 1 LKGKTVAIIGYGSQ-GHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPD 69 (314)
T ss_pred CCcCEEEEEeEcHH-HHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCc
Confidence 57999999999886 9999999999998777653221 1345678999999999984
No 219
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=95.78 E-value=0.015 Score=58.79 Aligned_cols=73 Identities=22% Similarity=0.393 Sum_probs=56.0
Q ss_pred EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC---------------------ChhhhccC---CcEEEEecCCCCcC
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT---------------------DPESIVRE---ADIVIAAAGQAMMI 224 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~---------------------~l~~~~~~---ADIVIsa~g~p~~i 224 (299)
+|-+||-|.+ |.++|.-|+++|.+|+++|++.. ++.+.+.. +|+||+.+..+..+
T Consensus 8 ~IG~IGLG~M-G~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV 86 (493)
T PLN02350 8 RIGLAGLAVM-GQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV 86 (493)
T ss_pred CEEEEeeHHH-HHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence 6899999886 99999999999999999997521 23344444 99999988866522
Q ss_pred C------CCccCCCeEEEEeeccC
Q 022295 225 K------GSWIKPGAAVIDVGTNA 242 (299)
Q Consensus 225 ~------~~~vk~gavVIDvg~~~ 242 (299)
+ ...+++|.++||.|...
T Consensus 87 ~~Vi~gl~~~l~~G~iiID~sT~~ 110 (493)
T PLN02350 87 DQTIKALSEYMEPGDCIIDGGNEW 110 (493)
T ss_pred HHHHHHHHhhcCCCCEEEECCCCC
Confidence 1 13468899999999763
No 220
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.75 E-value=0.042 Score=55.00 Aligned_cols=125 Identities=22% Similarity=0.283 Sum_probs=72.5
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChh--hhccCCcEEEEecCCCCcCCCCccCC-CeEEEEeecc
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPE--SIVREADIVIAAAGQAMMIKGSWIKP-GAAVIDVGTN 241 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~--~~~~~ADIVIsa~g~p~~i~~~~vk~-gavVIDvg~~ 241 (299)
+.+|+|+|+|-|.. |++++..|.++|+.|++++.+..... ......+-|=...|.- .. +|... ..+|..=|++
T Consensus 5 ~~~~kv~V~GLG~s-G~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~-~~--~~~~~~d~vV~SPGi~ 80 (448)
T COG0771 5 FQGKKVLVLGLGKS-GLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSH-DD--EDLAEFDLVVKSPGIP 80 (448)
T ss_pred ccCCEEEEEecccc-cHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCcc-ch--hccccCCEEEECCCCC
Confidence 45899999999998 99999999999999999986543310 0000011111111211 11 22222 4555555555
Q ss_pred CCCC---CccCCCceeeccCCchhhh-hhhceeccCCCCccHHHHHHHHHHHHHHHH
Q 022295 242 AVDD---STKKSGYRLVGDVDFHEAC-KVAGCVTPVPGGVGPMTVAMLLRNTLDGAK 294 (299)
Q Consensus 242 ~~~~---~~~~~g~kl~GDvdf~~~~-~~a~~iTPVPGGVGp~T~a~L~~n~v~a~~ 294 (299)
+... .-...|.++.||++.---. ..+-++ -|-|==|.-|+..|+.++++++-
T Consensus 81 ~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~v-aITGTNGKTTTTsli~~~l~~~G 136 (448)
T COG0771 81 PTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIV-AITGTNGKTTTTSLIAHLLKAAG 136 (448)
T ss_pred CCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEE-EEECCCchHHHHHHHHHHHHhcC
Confidence 4311 0011234789999742211 122222 24577799999999999998764
No 221
>PLN02477 glutamate dehydrogenase
Probab=95.74 E-value=0.024 Score=56.17 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=45.1
Q ss_pred cccCCHHHHHHHH----HhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEE-EEcCC
Q 022295 146 FLPCTPKGCLELL----KRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVT-IVHSH 200 (299)
Q Consensus 146 ~~PcT~~av~~ll----~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVt-v~~~~ 200 (299)
-.+.|++|+...+ ++++.+++|++|+|.|.|+ ||+.+|.+|.++|++|+ |++++
T Consensus 181 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGn-VG~~~A~~L~e~GakVVaVsD~~ 239 (410)
T PLN02477 181 REAATGRGVVFATEALLAEHGKSIAGQTFVIQGFGN-VGSWAAQLIHEKGGKIVAVSDIT 239 (410)
T ss_pred CCccchHHHHHHHHHHHHHcCCCccCCEEEEECCCH-HHHHHHHHHHHcCCEEEEEECCC
Confidence 3578998876655 4568899999999999888 59999999999999877 77764
No 222
>PLN02858 fructose-bisphosphate aldolase
Probab=95.74 E-value=0.014 Score=65.61 Aligned_cols=75 Identities=15% Similarity=0.204 Sum_probs=60.4
Q ss_pred CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCCCCc----C-CC
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQAMM----I-KG 226 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~p~~----i-~~ 226 (299)
++++|-+||-|.+ |.|+|..|++.|.+|++.+++. .+..+..++||+||+.+..+.- + ..
T Consensus 3 ~~~~IGfIGLG~M-G~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~ 81 (1378)
T PLN02858 3 SAGVVGFVGLDSL-SFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGD 81 (1378)
T ss_pred CCCeEEEEchhHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhch
Confidence 4678999999997 9999999999999999998752 3566888999999999986652 1 11
Q ss_pred ----CccCCCeEEEEeecc
Q 022295 227 ----SWIKPGAAVIDVGTN 241 (299)
Q Consensus 227 ----~~vk~gavVIDvg~~ 241 (299)
+.+++|.++||.++.
T Consensus 82 ~g~~~~l~~g~iivd~STi 100 (1378)
T PLN02858 82 EGAAKGLQKGAVILIRSTI 100 (1378)
T ss_pred hhHHhcCCCcCEEEECCCC
Confidence 235789999999865
No 223
>PRK06398 aldose dehydrogenase; Validated
Probab=95.73 E-value=0.027 Score=51.07 Aligned_cols=37 Identities=27% Similarity=0.257 Sum_probs=33.3
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~ 39 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIK 39 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 4789999999999889999999999999999887654
No 224
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=95.69 E-value=0.017 Score=58.05 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=53.2
Q ss_pred EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------------CChhhhcc---CCcEEEEecCCCCc--
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------------TDPESIVR---EADIVIAAAGQAMM-- 223 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------------~~l~~~~~---~ADIVIsa~g~p~~-- 223 (299)
++.|||.|.+ |.++|..|++.|.+|++++++. .++++.+. ++|+||..+..+..
T Consensus 3 ~IgvIGLG~M-G~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 3 DIGLIGLAVM-GQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred EEEEEeEhHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 6899999886 9999999999999999998652 23444454 47988876554432
Q ss_pred --CC--CCccCCCeEEEEeecc
Q 022295 224 --IK--GSWIKPGAAVIDVGTN 241 (299)
Q Consensus 224 --i~--~~~vk~gavVIDvg~~ 241 (299)
+. ...+++|.+|||.|..
T Consensus 82 ~vi~~l~~~L~~g~iIID~gn~ 103 (470)
T PTZ00142 82 ETIDNLLPLLEKGDIIIDGGNE 103 (470)
T ss_pred HHHHHHHhhCCCCCEEEECCCC
Confidence 21 1347889999999864
No 225
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=95.68 E-value=0.038 Score=53.44 Aligned_cols=78 Identities=21% Similarity=0.298 Sum_probs=52.2
Q ss_pred CCcEEEEEcCCccchHHHHHHHhhCCC---eEEEEcCC-C--------------CChh-hhccCCcEEEEecCCCC--cC
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLLKADA---TVTIVHSH-T--------------TDPE-SIVREADIVIAAAGQAM--MI 224 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~~~ga---tVtv~~~~-t--------------~~l~-~~~~~ADIVIsa~g~p~--~i 224 (299)
...+|.|+|+++.+|+-+..+|.+++. ++....+. + .++. +.+.++|+||.|+|.-- -+
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s~~~ 85 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSISKKF 85 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHHHHH
Confidence 457899999999999999999998653 34333222 1 0111 34578999999987431 11
Q ss_pred CCCccCCCeEEEEeeccCC
Q 022295 225 KGSWIKPGAAVIDVGTNAV 243 (299)
Q Consensus 225 ~~~~vk~gavVIDvg~~~~ 243 (299)
-+...+.|+.|||.+..+.
T Consensus 86 ~~~~~~~g~~VIDlS~~fR 104 (344)
T PLN02383 86 GPIAVDKGAVVVDNSSAFR 104 (344)
T ss_pred HHHHHhCCCEEEECCchhh
Confidence 1233467999999997653
No 226
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.61 E-value=0.032 Score=53.21 Aligned_cols=56 Identities=23% Similarity=0.388 Sum_probs=43.4
Q ss_pred CCcEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCCC-----------------------ChhhhccCCcEEEEecCC
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHTT-----------------------DPESIVREADIVIAAAGQ 220 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t~-----------------------~l~~~~~~ADIVIsa~g~ 220 (299)
++++|.|||+|. ||..+|..|+..+. .+.+++.+.. +-.+.+++|||||.+.|.
T Consensus 5 ~~~ki~iiGaG~-vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~ 83 (315)
T PRK00066 5 QHNKVVLVGDGA-VGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGA 83 (315)
T ss_pred CCCEEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCC
Confidence 578999999966 69999999998885 5787775311 113568999999999997
Q ss_pred CC
Q 022295 221 AM 222 (299)
Q Consensus 221 p~ 222 (299)
|.
T Consensus 84 ~~ 85 (315)
T PRK00066 84 PQ 85 (315)
T ss_pred CC
Confidence 53
No 227
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.58 E-value=0.036 Score=52.86 Aligned_cols=56 Identities=25% Similarity=0.490 Sum_probs=43.8
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCC-CeEEEEcCC--------------------------CCChhhhccCCcEEEEe
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSH--------------------------TTDPESIVREADIVIAA 217 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~--------------------------t~~l~~~~~~ADIVIsa 217 (299)
.+.++|+|||+|. ||..++.+|+..| +++.+++.+ +.++ +.+++||+||.+
T Consensus 3 ~~~~KI~IIGaG~-vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~-~~l~~ADiVVit 80 (319)
T PTZ00117 3 VKRKKISMIGAGQ-IGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNY-EDIKDSDVVVIT 80 (319)
T ss_pred CCCcEEEEECCCH-HHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCH-HHhCCCCEEEEC
Confidence 4678999999866 6999999999888 688888642 1244 478999999999
Q ss_pred cCCCC
Q 022295 218 AGQAM 222 (299)
Q Consensus 218 ~g~p~ 222 (299)
.|.|.
T Consensus 81 ag~~~ 85 (319)
T PTZ00117 81 AGVQR 85 (319)
T ss_pred CCCCC
Confidence 97643
No 228
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.58 E-value=0.025 Score=56.50 Aligned_cols=121 Identities=14% Similarity=0.130 Sum_probs=68.4
Q ss_pred CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCcc-CCCeEEEEeeccCCC
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWI-KPGAAVIDVGTNAVD 244 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~v-k~gavVIDvg~~~~~ 244 (299)
.||+|+|+|.|.. |++++.+|. +|+.|++.+.+.....+.-..-+..+ .|. + +.+.+ ....+|+--|+++..
T Consensus 5 ~~~~v~v~G~G~s-G~a~~~~L~-~g~~v~v~D~~~~~~~~~~~~~~~~~--~~~-~--~~~~~~~~d~vV~SPgI~~~~ 77 (454)
T PRK01368 5 TKQKIGVFGLGKT-GISVYEELQ-NKYDVIVYDDLKANRDIFEELYSKNA--IAA-L--SDSRWQNLDKIVLSPGIPLTH 77 (454)
T ss_pred CCCEEEEEeecHH-HHHHHHHHh-CCCEEEEECCCCCchHHHHhhhcCce--ecc-C--ChhHhhCCCEEEECCCCCCCC
Confidence 5899999999997 999999998 59999999855433221100001111 111 0 00111 123455555555421
Q ss_pred CC---ccCCCceeeccCCchhhhhhhceeccCCCCccHHHHHHHHHHHHHHH
Q 022295 245 DS---TKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGA 293 (299)
Q Consensus 245 ~~---~~~~g~kl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~ 293 (299)
.. -...|-++.+++++-........+--|-|--|.=||.-|+.++++.+
T Consensus 78 p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~ 129 (454)
T PRK01368 78 EIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSN 129 (454)
T ss_pred HHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence 00 00112358888887421111111223668899999999999998764
No 229
>PRK07680 late competence protein ComER; Validated
Probab=95.57 E-value=0.02 Score=53.02 Aligned_cols=70 Identities=13% Similarity=0.316 Sum_probs=51.2
Q ss_pred EEEEEcCCccchHHHHHHHhhCCC----eEEEEcCCC----------------CChhhhccCCcEEEEecCCCCc----C
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADA----TVTIVHSHT----------------TDPESIVREADIVIAAAGQAMM----I 224 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~ga----tVtv~~~~t----------------~~l~~~~~~ADIVIsa~g~p~~----i 224 (299)
++.|||.|.+ |..++..|.+.|. .|++++++. .+..+.+.++|+||.++. |.. +
T Consensus 2 ~I~iIG~G~m-G~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl 79 (273)
T PRK07680 2 NIGFIGTGNM-GTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL 79 (273)
T ss_pred EEEEECccHH-HHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH
Confidence 5899998775 9999999998873 688887642 244466789999999984 331 2
Q ss_pred C--CCccCCCeEEEEeec
Q 022295 225 K--GSWIKPGAAVIDVGT 240 (299)
Q Consensus 225 ~--~~~vk~gavVIDvg~ 240 (299)
. ...++++.+||++.-
T Consensus 80 ~~l~~~l~~~~~iis~~a 97 (273)
T PRK07680 80 QKLAPHLTDEHCLVSITS 97 (273)
T ss_pred HHHHhhcCCCCEEEEECC
Confidence 1 134667889999873
No 230
>PRK09072 short chain dehydrogenase; Provisional
Probab=95.54 E-value=0.019 Score=51.92 Aligned_cols=37 Identities=27% Similarity=0.384 Sum_probs=33.4
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+++|++++|.|+++.+|+.++..|+++|++|+++.++
T Consensus 2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRN 38 (263)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 4678999999999989999999999999999998765
No 231
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.52 E-value=0.026 Score=49.39 Aligned_cols=49 Identities=35% Similarity=0.502 Sum_probs=38.0
Q ss_pred EEEEEcCCccchHHHHHHHhhCCCeEEEEcCC--------------------------------------CCChhhhccC
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSH--------------------------------------TTDPESIVRE 210 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~--------------------------------------t~~l~~~~~~ 210 (299)
+|.|||+|.+ |+.+|.+++..|..|++++.+ +.++.+.. +
T Consensus 1 ~V~ViGaG~m-G~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~ 78 (180)
T PF02737_consen 1 KVAVIGAGTM-GRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D 78 (180)
T ss_dssp EEEEES-SHH-HHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T
T ss_pred CEEEEcCCHH-HHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h
Confidence 6899998775 999999999999999999754 24566666 9
Q ss_pred CcEEEEecC
Q 022295 211 ADIVIAAAG 219 (299)
Q Consensus 211 ADIVIsa~g 219 (299)
||+||=++.
T Consensus 79 adlViEai~ 87 (180)
T PF02737_consen 79 ADLVIEAIP 87 (180)
T ss_dssp ESEEEE-S-
T ss_pred hheehhhcc
Confidence 999998875
No 232
>PRK12367 short chain dehydrogenase; Provisional
Probab=95.50 E-value=0.027 Score=51.39 Aligned_cols=37 Identities=24% Similarity=0.282 Sum_probs=32.8
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.++||+++|.|+|+-+|+.++..|+++|++|+++.++
T Consensus 11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~ 47 (245)
T PRK12367 11 TWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHS 47 (245)
T ss_pred hhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 4689999999999889999999999999999887654
No 233
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.48 E-value=0.031 Score=49.46 Aligned_cols=57 Identities=26% Similarity=0.320 Sum_probs=43.9
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC------------Ch----h---hhccCCcEEEEecCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT------------DP----E---SIVREADIVIAAAGQ 220 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~------------~l----~---~~~~~ADIVIsa~g~ 220 (299)
+++||+++|.|+++-+|+.++..|+++|++|+++.++.. |+ . +.....|+||..+|.
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~lv~~ag~ 77 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPDLSGNFHFLQLDLSDDLEPLFDWVPSVDILCNTAGI 77 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccccCCcEEEEECChHHHHHHHHHhhCCCCEEEECCCC
Confidence 478999999999999999999999999999988876421 11 1 123456888877774
No 234
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.43 E-value=0.014 Score=55.97 Aligned_cols=76 Identities=24% Similarity=0.263 Sum_probs=51.7
Q ss_pred CcEEEEEcCCccchHHHHHHHhhCCC---eEEEEcCCC---------------CChh-hhccCCcEEEEecCCCC--cCC
Q 022295 167 GKRAVVVGRSNIVGLPVSLLLLKADA---TVTIVHSHT---------------TDPE-SIVREADIVIAAAGQAM--MIK 225 (299)
Q Consensus 167 gk~vvViG~s~~vG~pla~lL~~~ga---tVtv~~~~t---------------~~l~-~~~~~ADIVIsa~g~p~--~i~ 225 (299)
+.+|.|+|+++.+|+-+..+|.+++. ++....+.. .++. ..+..+|+||.|+|.-. -+-
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~~~ 80 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVSKKYA 80 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHHHHHH
Confidence 46899999999999999999998764 334443321 0111 22468999999987421 122
Q ss_pred CCccCCCeEEEEeeccC
Q 022295 226 GSWIKPGAAVIDVGTNA 242 (299)
Q Consensus 226 ~~~vk~gavVIDvg~~~ 242 (299)
+..++.|++|||.+..+
T Consensus 81 ~~~~~~G~~VIDlS~~~ 97 (334)
T PRK14874 81 PKAAAAGAVVIDNSSAF 97 (334)
T ss_pred HHHHhCCCEEEECCchh
Confidence 23456789999998764
No 235
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.41 E-value=0.027 Score=52.90 Aligned_cols=53 Identities=19% Similarity=0.354 Sum_probs=42.9
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC---------------------------------CCChhhhccCCcEE
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH---------------------------------TTDPESIVREADIV 214 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~---------------------------------t~~l~~~~~~ADIV 214 (299)
++|.|||.|.+ |.++|..|++.|..|++++++ +.++.+.+++||+|
T Consensus 5 ~~I~vIGaG~m-G~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlV 83 (311)
T PRK06130 5 QNLAIIGAGTM-GSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLV 83 (311)
T ss_pred cEEEEECCCHH-HHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEE
Confidence 68999998775 999999999999999999742 22344567899999
Q ss_pred EEecCCC
Q 022295 215 IAAAGQA 221 (299)
Q Consensus 215 Isa~g~p 221 (299)
|.++...
T Consensus 84 i~av~~~ 90 (311)
T PRK06130 84 IEAVPEK 90 (311)
T ss_pred EEeccCc
Confidence 9998743
No 236
>PRK12828 short chain dehydrogenase; Provisional
Probab=95.39 E-value=0.022 Score=50.08 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=34.2
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT 201 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t 201 (299)
.++||+++|.|+++.+|+.++..|+++|++|.++.++.
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~ 41 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGA 41 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCCh
Confidence 36799999999999999999999999999999887754
No 237
>PRK08862 short chain dehydrogenase; Provisional
Probab=95.36 E-value=0.018 Score=51.76 Aligned_cols=39 Identities=15% Similarity=0.306 Sum_probs=35.0
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT 202 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~ 202 (299)
+++||+++|.|+|.-+|+.++..|+++|++|.++.++..
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~ 40 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQS 40 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 478999999999999999999999999999999876543
No 238
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=95.36 E-value=0.016 Score=52.07 Aligned_cols=37 Identities=30% Similarity=0.418 Sum_probs=33.8
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+++||+++|.|+++-+|+.++..|+++|++|.+.+++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~ 43 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRD 43 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCC
Confidence 5789999999999989999999999999999988765
No 239
>PRK10637 cysG siroheme synthase; Provisional
Probab=95.35 E-value=0.022 Score=56.96 Aligned_cols=60 Identities=23% Similarity=0.310 Sum_probs=45.2
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-CCCh-----------------hhhccCCcEEEEecCCCCc
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-TTDP-----------------ESIVREADIVIAAAGQAMM 223 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-t~~l-----------------~~~~~~ADIVIsa~g~p~~ 223 (299)
++++||+|+|||.|. |+.-=+..|++.||.|||+... ++++ .+.+..+++||.||+.+.+
T Consensus 8 ~~l~~~~vlvvGgG~-vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~~ 85 (457)
T PRK10637 8 CQLRDRDCLLVGGGD-VAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDAV 85 (457)
T ss_pred EEcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHHH
Confidence 578999999999777 4766667788899999998432 1111 2457789999999987653
No 240
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.33 E-value=0.026 Score=51.72 Aligned_cols=71 Identities=21% Similarity=0.368 Sum_probs=49.5
Q ss_pred EEEEEcCCccchHHHHHHHhhCCC---eEEEEcCC----------------CCChhhhccCCcEEEEecCCCC---cCCC
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADA---TVTIVHSH----------------TTDPESIVREADIVIAAAGQAM---MIKG 226 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~ga---tVtv~~~~----------------t~~l~~~~~~ADIVIsa~g~p~---~i~~ 226 (299)
++.|||.|.+ |.+++..|.+.|. .+.+++++ +.+..+.++++|+||.++.... ++..
T Consensus 2 ~IgiIG~G~m-G~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p~~~~~vl~~ 80 (258)
T PRK06476 2 KIGFIGTGAI-TEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRPQIAEEVLRA 80 (258)
T ss_pred eEEEECcCHH-HHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCHHHHHHHHHH
Confidence 5889998885 9999999988774 24666643 1244566789999999998322 2222
Q ss_pred CccCCCeEEEEeec
Q 022295 227 SWIKPGAAVIDVGT 240 (299)
Q Consensus 227 ~~vk~gavVIDvg~ 240 (299)
-++++|.+||++.-
T Consensus 81 l~~~~~~~vis~~a 94 (258)
T PRK06476 81 LRFRPGQTVISVIA 94 (258)
T ss_pred hccCCCCEEEEECC
Confidence 24578888888764
No 241
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.32 E-value=0.032 Score=55.88 Aligned_cols=125 Identities=15% Similarity=0.213 Sum_probs=71.3
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccC-CCeEEEEeeccC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIK-PGAAVIDVGTNA 242 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk-~gavVIDvg~~~ 242 (299)
.+.+|+|+|+|.|++ |++++.+|.++|+.|++++++.....+.+.+..+.+..-+.+ .+++. ...+|+--|+++
T Consensus 12 ~~~~~~v~v~G~G~s-G~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~----~~~~~~~d~vV~Spgi~~ 86 (473)
T PRK00141 12 QELSGRVLVAGAGVS-GRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEA----SDQLDSFSLVVTSPGWRP 86 (473)
T ss_pred cccCCeEEEEccCHH-HHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCc----hhHhcCCCEEEeCCCCCC
Confidence 467899999999997 999999999999999999865322222222222222111111 11221 234555555543
Q ss_pred CCCC---ccCCCceeeccCCchhhhh------hhceeccCCCCccHHHHHHHHHHHHHHH
Q 022295 243 VDDS---TKKSGYRLVGDVDFHEACK------VAGCVTPVPGGVGPMTVAMLLRNTLDGA 293 (299)
Q Consensus 243 ~~~~---~~~~g~kl~GDvdf~~~~~------~a~~iTPVPGGVGp~T~a~L~~n~v~a~ 293 (299)
.... -...|-++.|+.++..... ....+--|-|-.|.=|+.-|+.++++..
T Consensus 87 ~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~ 146 (473)
T PRK00141 87 DSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEG 146 (473)
T ss_pred CCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 2110 0011235777777521110 0111223568889999999999988753
No 242
>PLN02858 fructose-bisphosphate aldolase
Probab=95.31 E-value=0.023 Score=64.08 Aligned_cols=74 Identities=19% Similarity=0.318 Sum_probs=58.9
Q ss_pred CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCCCCc----C-CC-
Q 022295 167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQAMM----I-KG- 226 (299)
Q Consensus 167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~p~~----i-~~- 226 (299)
.++|.+||-|.+ |.++|..|++.|.+|++++++. .+..+.++++|+||++++.|.- + ..
T Consensus 324 ~~~IGfIGlG~M-G~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~ 402 (1378)
T PLN02858 324 VKRIGFIGLGAM-GFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDL 402 (1378)
T ss_pred CCeEEEECchHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchh
Confidence 378999999886 9999999999999999998652 3556788999999999996652 2 11
Q ss_pred ---CccCCCeEEEEeecc
Q 022295 227 ---SWIKPGAAVIDVGTN 241 (299)
Q Consensus 227 ---~~vk~gavVIDvg~~ 241 (299)
+.+++|.++||.++.
T Consensus 403 g~~~~l~~g~ivVd~STv 420 (1378)
T PLN02858 403 GAVSALPAGASIVLSSTV 420 (1378)
T ss_pred hHHhcCCCCCEEEECCCC
Confidence 235789999998863
No 243
>PRK06523 short chain dehydrogenase; Provisional
Probab=95.30 E-value=0.04 Score=49.57 Aligned_cols=38 Identities=32% Similarity=0.435 Sum_probs=34.1
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~ 42 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARS 42 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCC
Confidence 35789999999999889999999999999999888754
No 244
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=95.29 E-value=0.048 Score=50.24 Aligned_cols=93 Identities=20% Similarity=0.331 Sum_probs=63.1
Q ss_pred ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCe-EEEEcCCC-----------------CChh---
Q 022295 147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADAT-VTIVHSHT-----------------TDPE--- 205 (299)
Q Consensus 147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gat-Vtv~~~~t-----------------~~l~--- 205 (299)
++|....++..+++.+. ..|++|+|+|.|. +|..+++++...|++ |+++.+.. .+..
T Consensus 102 l~~~~~ta~~al~~~~~-~~g~~VlV~G~G~-vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~ 179 (280)
T TIGR03366 102 AGCATATVMAALEAAGD-LKGRRVLVVGAGM-LGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQ 179 (280)
T ss_pred hhhHHHHHHHHHHhccC-CCCCEEEEECCCH-HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHH
Confidence 44544445555655554 3899999999865 699999999999986 77664321 1111
Q ss_pred -hhc--cCCcEEEEecCCCCcC--CCCccCCCeEEEEeecc
Q 022295 206 -SIV--READIVIAAAGQAMMI--KGSWIKPGAAVIDVGTN 241 (299)
Q Consensus 206 -~~~--~~ADIVIsa~g~p~~i--~~~~vk~gavVIDvg~~ 241 (299)
+.+ +.+|++|-++|.+..+ --++++++..++.+|..
T Consensus 180 ~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 180 GGLQNGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred HHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccC
Confidence 111 2489999999977643 23568898899999953
No 245
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.28 E-value=0.025 Score=51.34 Aligned_cols=52 Identities=23% Similarity=0.420 Sum_probs=42.1
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-----------------------Chhhh-ccCCcEEEEecCC
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-----------------------DPESI-VREADIVIAAAGQ 220 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-----------------------~l~~~-~~~ADIVIsa~g~ 220 (299)
++++|+|.|.+ |.++|..|.++|..|++...+.. -|+++ +.+||++|.+||.
T Consensus 1 m~iiIiG~G~v-G~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~ 76 (225)
T COG0569 1 MKIIIIGAGRV-GRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGN 76 (225)
T ss_pred CEEEEECCcHH-HHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCC
Confidence 57999999885 99999999999999999975421 13444 7889999999986
No 246
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=95.28 E-value=0.039 Score=50.86 Aligned_cols=53 Identities=26% Similarity=0.409 Sum_probs=41.6
Q ss_pred EEEEcCCccchHHHHHHHhhCC----CeEEEEcCC-------------------------CCChhhhccCCcEEEEecCC
Q 022295 170 AVVVGRSNIVGLPVSLLLLKAD----ATVTIVHSH-------------------------TTDPESIVREADIVIAAAGQ 220 (299)
Q Consensus 170 vvViG~s~~vG~pla~lL~~~g----atVtv~~~~-------------------------t~~l~~~~~~ADIVIsa~g~ 220 (299)
++|||+|+.+|..++..|+..+ .++++.+.+ +.++.+.+++||+||.++|.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 5799996678999999988888 578877632 23556889999999999887
Q ss_pred CC
Q 022295 221 AM 222 (299)
Q Consensus 221 p~ 222 (299)
|.
T Consensus 81 ~~ 82 (263)
T cd00650 81 GR 82 (263)
T ss_pred CC
Confidence 54
No 247
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=95.24 E-value=0.019 Score=51.50 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=35.2
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT 201 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t 201 (299)
..++||+++|.|+++-+|+.++..|+++|++|+++.++.
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~ 45 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNA 45 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 458899999999999999999999999999999987653
No 248
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.22 E-value=0.015 Score=52.62 Aligned_cols=34 Identities=29% Similarity=0.511 Sum_probs=29.8
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEc
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVH 198 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~ 198 (299)
.|+.++|+|+|.|++ |..++..|...|. ++++++
T Consensus 18 ~L~~~~VlivG~Ggl-Gs~va~~La~~Gvg~i~lvD 52 (228)
T cd00757 18 KLKNARVLVVGAGGL-GSPAAEYLAAAGVGKLGLVD 52 (228)
T ss_pred HHhCCcEEEECCCHH-HHHHHHHHHHcCCCEEEEEc
Confidence 467899999999995 9999999999996 788884
No 249
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.18 E-value=0.03 Score=49.90 Aligned_cols=35 Identities=26% Similarity=0.523 Sum_probs=30.9
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHS 199 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~ 199 (299)
.|++++|+|+|.|++ |..++..|...|. ++++++.
T Consensus 18 kl~~~~VlviG~Ggl-Gs~ia~~La~~Gv~~i~lvD~ 53 (202)
T TIGR02356 18 RLLNSHVLIIGAGGL-GSPAALYLAGAGVGTIVIVDD 53 (202)
T ss_pred HhcCCCEEEECCCHH-HHHHHHHHHHcCCCeEEEecC
Confidence 468899999999995 9999999999996 8888863
No 250
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=95.18 E-value=0.031 Score=53.65 Aligned_cols=63 Identities=11% Similarity=0.147 Sum_probs=45.4
Q ss_pred hHHHHHHHhhCCCeEEEEcCC-------------------CCChhhhccCCcEEEEecCCCCcC----C--CCccCCCeE
Q 022295 180 GLPVSLLLLKADATVTIVHSH-------------------TTDPESIVREADIVIAAAGQAMMI----K--GSWIKPGAA 234 (299)
Q Consensus 180 G~pla~lL~~~gatVtv~~~~-------------------t~~l~~~~~~ADIVIsa~g~p~~i----~--~~~vk~gav 234 (299)
|.|+|..|++.|.+|++++++ ..+..+.+++||+||+.++.+.-+ . .+.+++|++
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaI 111 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAV 111 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCE
Confidence 667777777777777777542 124668899999999999976532 2 245789999
Q ss_pred EEEeeccC
Q 022295 235 VIDVGTNA 242 (299)
Q Consensus 235 VIDvg~~~ 242 (299)
|||.++..
T Consensus 112 VID~STIs 119 (341)
T TIGR01724 112 ICNTCTVS 119 (341)
T ss_pred EEECCCCC
Confidence 99998753
No 251
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=95.15 E-value=0.042 Score=54.35 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=35.3
Q ss_pred CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295 162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT 201 (299)
Q Consensus 162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t 201 (299)
...++||+++|.|+|+-+|+.++..|.++|++|.++.++.
T Consensus 173 a~sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~ 212 (406)
T PRK07424 173 ALSLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNS 212 (406)
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3467899999999999999999999999999999887653
No 252
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=95.13 E-value=0.018 Score=57.82 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=52.4
Q ss_pred EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-------------------Chhhh---ccCCcEEEEecCCCC----
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-------------------DPESI---VREADIVIAAAGQAM---- 222 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-------------------~l~~~---~~~ADIVIsa~g~p~---- 222 (299)
++.+||-|.+ |.++|..|++.|.+|++.+++.. ++++. ++++|+||..+..+.
T Consensus 1 ~IG~IGLG~M-G~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~ 79 (467)
T TIGR00873 1 DIGVIGLAVM-GSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDA 79 (467)
T ss_pred CEEEEeeHHH-HHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHH
Confidence 3689998886 99999999999999999986521 22232 346899998876543
Q ss_pred cCC--CCccCCCeEEEEeecc
Q 022295 223 MIK--GSWIKPGAAVIDVGTN 241 (299)
Q Consensus 223 ~i~--~~~vk~gavVIDvg~~ 241 (299)
++. ...+++|.+|||.|..
T Consensus 80 Vi~~l~~~L~~g~iIID~gns 100 (467)
T TIGR00873 80 VINQLLPLLEKGDIIIDGGNS 100 (467)
T ss_pred HHHHHHhhCCCCCEEEECCCc
Confidence 221 1357889999999953
No 253
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.12 E-value=0.037 Score=49.38 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=30.9
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHS 199 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~ 199 (299)
.|+.++|+|+|.|++ |..+|..|+..|. ++++++.
T Consensus 18 ~L~~~~V~IvG~Ggl-Gs~ia~~La~~Gvg~i~lvD~ 53 (200)
T TIGR02354 18 KLEQATVAICGLGGL-GSNVAINLARAGIGKLILVDF 53 (200)
T ss_pred HHhCCcEEEECcCHH-HHHHHHHHHHcCCCEEEEECC
Confidence 467899999999996 9999999999997 7999864
No 254
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=95.10 E-value=0.024 Score=50.98 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=34.1
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~ 42 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDIT 42 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCC
Confidence 4789999999999999999999999999999998765
No 255
>PRK08339 short chain dehydrogenase; Provisional
Probab=95.10 E-value=0.021 Score=52.06 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=34.2
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.+++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~ 41 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRN 41 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 35789999999998888999999999999999998764
No 256
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.08 E-value=0.045 Score=51.94 Aligned_cols=69 Identities=30% Similarity=0.445 Sum_probs=51.1
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC------------------------------CChhhhccCCcEEEEe
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT------------------------------TDPESIVREADIVIAA 217 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t------------------------------~~l~~~~~~ADIVIsa 217 (299)
.+|+|||.|.+ |.++|..|.+.|.+|+++.+.. .+. +.+..+|+||.+
T Consensus 3 mkI~IiG~G~m-G~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~ 80 (341)
T PRK08229 3 ARICVLGAGSI-GCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT 80 (341)
T ss_pred ceEEEECCCHH-HHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence 47999998775 9999999999999999987531 112 346789999999
Q ss_pred cCCCCc---CC--CCccCCCeEEEEe
Q 022295 218 AGQAMM---IK--GSWIKPGAAVIDV 238 (299)
Q Consensus 218 ~g~p~~---i~--~~~vk~gavVIDv 238 (299)
+..+.. +. ...++++.+|+++
T Consensus 81 vk~~~~~~~~~~l~~~~~~~~iii~~ 106 (341)
T PRK08229 81 VKSAATADAAAALAGHARPGAVVVSF 106 (341)
T ss_pred ecCcchHHHHHHHHhhCCCCCEEEEe
Confidence 976653 11 1245778888887
No 257
>PRK05866 short chain dehydrogenase; Provisional
Probab=95.07 E-value=0.039 Score=51.45 Aligned_cols=39 Identities=28% Similarity=0.378 Sum_probs=34.7
Q ss_pred CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
...++||+++|.|+++-+|+.++..|+++|+.|.++.++
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARR 73 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 456789999999998889999999999999999988765
No 258
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=95.07 E-value=0.026 Score=53.14 Aligned_cols=58 Identities=31% Similarity=0.500 Sum_probs=43.2
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEE----------------cCCC----------CChhhhccCCcEEEEe
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIV----------------HSHT----------TDPESIVREADIVIAA 217 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~----------------~~~t----------~~l~~~~~~ADIVIsa 217 (299)
.-.+.+|.|+|+++-+|.|++++|. .+-.|+-. |-+| ..|++.++.||+||-+
T Consensus 25 ~~~~~KVAvlGAaGGIGQPLSLLlK-~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIP 103 (345)
T KOG1494|consen 25 SQRGLKVAVLGAAGGIGQPLSLLLK-LNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIP 103 (345)
T ss_pred ccCcceEEEEecCCccCccHHHHHh-cCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEec
Confidence 3456799999999999999998765 44333333 2222 3688999999999999
Q ss_pred cCCCC
Q 022295 218 AGQAM 222 (299)
Q Consensus 218 ~g~p~ 222 (299)
+|.|.
T Consensus 104 AGVPR 108 (345)
T KOG1494|consen 104 AGVPR 108 (345)
T ss_pred CCCCC
Confidence 99765
No 259
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.07 E-value=0.031 Score=51.32 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=29.8
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEc
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVH 198 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~ 198 (299)
.|++++|+|+|.|++ |.+++..|+..|. ++++++
T Consensus 21 ~L~~~~VlvvG~Ggl-Gs~va~~La~~Gvg~i~lvD 55 (240)
T TIGR02355 21 ALKASRVLIVGLGGL-GCAASQYLAAAGVGNLTLLD 55 (240)
T ss_pred HHhCCcEEEECcCHH-HHHHHHHHHHcCCCEEEEEe
Confidence 357899999999996 9999999999995 788886
No 260
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=95.05 E-value=0.047 Score=51.02 Aligned_cols=95 Identities=13% Similarity=-0.017 Sum_probs=61.4
Q ss_pred ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------------CChhh
Q 022295 147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------------TDPES 206 (299)
Q Consensus 147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------------~~l~~ 206 (299)
+||.....+..|.+..---.|.+|+|.|+++.||..+++++...|++|+.+.+.. .++.+
T Consensus 119 l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~ 198 (325)
T TIGR02825 119 VGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEE 198 (325)
T ss_pred cccHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHH
Confidence 3444444444454443334789999999877789999999999999877654321 12222
Q ss_pred hc-----cCCcEEEEecCCCCcC-CCCccCCCeEEEEeecc
Q 022295 207 IV-----READIVIAAAGQAMMI-KGSWIKPGAAVIDVGTN 241 (299)
Q Consensus 207 ~~-----~~ADIVIsa~g~p~~i-~~~~vk~gavVIDvg~~ 241 (299)
.+ +..|+++.++|.+.+- --++++++..++.+|..
T Consensus 199 ~~~~~~~~gvdvv~d~~G~~~~~~~~~~l~~~G~iv~~G~~ 239 (325)
T TIGR02825 199 TLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAI 239 (325)
T ss_pred HHHHhCCCCeEEEEECCCHHHHHHHHHHhCcCcEEEEecch
Confidence 11 2368888888865431 23557888888888853
No 261
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.04 E-value=0.074 Score=50.39 Aligned_cols=85 Identities=16% Similarity=0.248 Sum_probs=58.5
Q ss_pred HHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC-------------------CCChhhhcc---CC
Q 022295 155 LELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH-------------------TTDPESIVR---EA 211 (299)
Q Consensus 155 ~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~-------------------t~~l~~~~~---~A 211 (299)
+..+++.+. ..|++|+|.|.| .+|..+++++...|+ .|+++.+. ..++.+..+ ..
T Consensus 159 ~~al~~~~~-~~g~~VlV~G~G-~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~ 236 (343)
T PRK09880 159 IHAAHQAGD-LQGKRVFVSGVG-PIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYF 236 (343)
T ss_pred HHHHHhcCC-CCCCEEEEECCC-HHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCC
Confidence 344554443 379999999975 469999999999998 56655432 112333222 27
Q ss_pred cEEEEecCCCCcC--CCCccCCCeEEEEeecc
Q 022295 212 DIVIAAAGQAMMI--KGSWIKPGAAVIDVGTN 241 (299)
Q Consensus 212 DIVIsa~g~p~~i--~~~~vk~gavVIDvg~~ 241 (299)
|+||.++|.+..+ --+.+++|..++.+|..
T Consensus 237 D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~ 268 (343)
T PRK09880 237 DVSFEVSGHPSSINTCLEVTRAKGVMVQVGMG 268 (343)
T ss_pred CEEEECCCCHHHHHHHHHHhhcCCEEEEEccC
Confidence 9999999987543 23568899999999964
No 262
>PRK07062 short chain dehydrogenase; Provisional
Probab=95.04 E-value=0.027 Score=50.95 Aligned_cols=38 Identities=39% Similarity=0.566 Sum_probs=34.5
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.+++||.++|.|+++-+|+.++..|+++|++|+++.++
T Consensus 4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 46889999999999989999999999999999988765
No 263
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.04 E-value=0.033 Score=52.10 Aligned_cols=72 Identities=24% Similarity=0.316 Sum_probs=51.4
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC-------------------------------------hhhhccC
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD-------------------------------------PESIVRE 210 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~-------------------------------------l~~~~~~ 210 (299)
++|.|||.|.+ |.++|..|+..|..|++++++... -.+.+++
T Consensus 5 ~~V~vIG~G~m-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (295)
T PLN02545 5 KKVGVVGAGQM-GSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRD 83 (295)
T ss_pred CEEEEECCCHH-HHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCC
Confidence 68999998876 999999999999999999754211 1145788
Q ss_pred CcEEEEecC-CCCc----CC--CCccCCCeEEE-Eeec
Q 022295 211 ADIVIAAAG-QAMM----IK--GSWIKPGAAVI-DVGT 240 (299)
Q Consensus 211 ADIVIsa~g-~p~~----i~--~~~vk~gavVI-Dvg~ 240 (299)
||+||.++. .|.. +. .+.++++++++ +.+.
T Consensus 84 aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~ 121 (295)
T PLN02545 84 ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSS 121 (295)
T ss_pred CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 999999987 3331 11 13467777775 4443
No 264
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.04 E-value=0.027 Score=50.10 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=34.2
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT 201 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t 201 (299)
++++|+++|+|+++-+|+.++..|+++|++|++..++.
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~ 39 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNE 39 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 36889999999999999999999999999999887764
No 265
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.03 E-value=0.069 Score=51.11 Aligned_cols=56 Identities=23% Similarity=0.400 Sum_probs=43.4
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCC-CeEEEEcCC--------------------------CCChhhhccCCcEEEEe
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSH--------------------------TTDPESIVREADIVIAA 217 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~--------------------------t~~l~~~~~~ADIVIsa 217 (299)
++.++|+|||+|. ||..+|..|+..| ++|.+.+.. +.++ +.+++||+||.+
T Consensus 4 ~~~~KI~IIGaG~-vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~t 81 (321)
T PTZ00082 4 IKRRKISLIGSGN-IGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVT 81 (321)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEEC
Confidence 3457999999877 5999999998888 477777642 1344 678999999999
Q ss_pred cCCCC
Q 022295 218 AGQAM 222 (299)
Q Consensus 218 ~g~p~ 222 (299)
+|.|.
T Consensus 82 ag~~~ 86 (321)
T PTZ00082 82 AGLTK 86 (321)
T ss_pred CCCCC
Confidence 88754
No 266
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=95.00 E-value=0.047 Score=52.19 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=51.3
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC-CCC---hhhhccCCcEEEEecCCC--CcCCCCccCCCeEEEEeec
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH-TTD---PESIVREADIVIAAAGQA--MMIKGSWIKPGAAVIDVGT 240 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~-t~~---l~~~~~~ADIVIsa~g~p--~~i~~~~vk~gavVIDvg~ 240 (299)
-+|.|+|+++.+|.-+..+|.++.- ++.-..++ ..+ ..+...++|+||.|++.- .-+-+...+.|..|||.+.
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~~~~~~~~~~~~DvvFlalp~~~s~~~~~~~~~~g~~VIDlSa 82 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKDAAARRELLNAADVAILCLPDDAAREAVALIDNPATRVIDAST 82 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCcccCchhhhcCCCEEEECCCHHHHHHHHHHHHhCCCEEEECCh
Confidence 4799999999999999999988762 33322222 112 223446899999998631 1122233467999999998
Q ss_pred cCCC
Q 022295 241 NAVD 244 (299)
Q Consensus 241 ~~~~ 244 (299)
.+.-
T Consensus 83 dfRl 86 (313)
T PRK11863 83 AHRT 86 (313)
T ss_pred hhhc
Confidence 7643
No 267
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=94.97 E-value=0.042 Score=52.98 Aligned_cols=171 Identities=22% Similarity=0.269 Sum_probs=106.9
Q ss_pred cHHHHHHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCCCCCHHHHHcc-CCccccCCCC--
Q 022295 53 SQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGE-ISLEKDVDGF-- 129 (299)
Q Consensus 53 s~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~~i~~~~i~~~-i~p~KDVDg~-- 129 (299)
++.|-+.-.+.+++-|++.+.+. +.+.+|+...+ ++.|+++|.-- .+++ .+++++ -.--|=|...
T Consensus 12 ~e~~~~~~~~~l~~~g~~v~~~~---~~~~eel~~~i------~~~~aviVrs~--tkvt-advl~aa~~~lkvVgrag~ 79 (406)
T KOG0068|consen 12 AESLDQACIEILKDNGYQVEFKK---NLSLEELIEKI------KDCDALIVRSK--TKVT-ADVLEAAAGGLKVVGRAGI 79 (406)
T ss_pred ecccchHHHHHHHhcCceEEEec---cCCHHHHHHHh------ccCCEEEEEeC--Ceec-HHHHHhhcCCeEEEEeccc
Confidence 34555666778888898876554 34556776666 45889998865 5565 455553 2223333221
Q ss_pred --Ccccc------cccccCCCCCccccCCHHHHHHH-------H-------------------HhhCCCcCCcEEEEEcC
Q 022295 130 --HPLNI------GKLAMKGRDPLFLPCTPKGCLEL-------L-------------------KRSGVTIKGKRAVVVGR 175 (299)
Q Consensus 130 --~~~n~------g~l~~g~~~~~~~PcT~~av~~l-------l-------------------~~~~~~l~gk~vvViG~ 175 (299)
..+++ |-+..+ .|. . .+.++-|+ | ++.|.++.||+.-|+|.
T Consensus 80 G~dNVDL~AAte~gi~Vvn--~P~-~--Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~ 154 (406)
T KOG0068|consen 80 GVDNVDLKAATENGILVVN--TPT-A--NSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGL 154 (406)
T ss_pred CccccChhhHHhCCeEEEe--CCC-C--ChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeec
Confidence 11111 111111 111 1 12332222 1 22367899999999999
Q ss_pred CccchHHHHHHHhhCCCeEEEEcCCCC------------ChhhhccCCcEEEEecC-CC---CcCCCCc---cCCCeEEE
Q 022295 176 SNIVGLPVSLLLLKADATVTIVHSHTT------------DPESIVREADIVIAAAG-QA---MMIKGSW---IKPGAAVI 236 (299)
Q Consensus 176 s~~vG~pla~lL~~~gatVtv~~~~t~------------~l~~~~~~ADIVIsa~g-~p---~~i~~~~---vk~gavVI 236 (299)
|.+ |.-+|..+...|..|.-.+--++ .++|.+..||.|-.-++ .| +++..+- .|+|..+|
T Consensus 155 GrI-GseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriI 233 (406)
T KOG0068|consen 155 GRI-GSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRII 233 (406)
T ss_pred ccc-hHHHHHHHHhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEE
Confidence 996 99999999999988877765432 46799999999886666 33 3566554 48899999
Q ss_pred Eeecc
Q 022295 237 DVGTN 241 (299)
Q Consensus 237 Dvg~~ 241 (299)
++..-
T Consensus 234 N~aRG 238 (406)
T KOG0068|consen 234 NVARG 238 (406)
T ss_pred EecCC
Confidence 98753
No 268
>PRK05717 oxidoreductase; Validated
Probab=94.97 E-value=0.03 Score=50.37 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=34.4
Q ss_pred CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295 162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS 199 (299)
Q Consensus 162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~ 199 (299)
+..++||+++|.|.++.+|+.++..|+++|++|.++.+
T Consensus 5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~ 42 (255)
T PRK05717 5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADL 42 (255)
T ss_pred CcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcC
Confidence 46789999999999999999999999999999998854
No 269
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=94.97 E-value=0.041 Score=49.07 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=33.3
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~ 38 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRS 38 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCc
Confidence 5789999999999889999999999999998887653
No 270
>PRK07063 short chain dehydrogenase; Provisional
Probab=94.95 E-value=0.027 Score=50.73 Aligned_cols=37 Identities=22% Similarity=0.386 Sum_probs=33.5
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~ 40 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLD 40 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4789999999999989999999999999999988764
No 271
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.93 E-value=0.051 Score=51.30 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=42.8
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------------------------------CChhhhcc
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------------------------------TDPESIVR 209 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------------------------------~~l~~~~~ 209 (299)
++|.|||.|- +|.++|..|++.|..|++++++. .++.+.++
T Consensus 3 ~~V~VIG~G~-mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 3 GSVAIIGAGL-IGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred cEEEEECccH-HHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 4799999766 59999999999999999997542 24446778
Q ss_pred CCcEEEEecCCC
Q 022295 210 EADIVIAAAGQA 221 (299)
Q Consensus 210 ~ADIVIsa~g~p 221 (299)
++|+||.++...
T Consensus 82 ~ad~Vi~avpe~ 93 (308)
T PRK06129 82 DADYVQESAPEN 93 (308)
T ss_pred CCCEEEECCcCC
Confidence 999999998743
No 272
>PRK06138 short chain dehydrogenase; Provisional
Probab=94.93 E-value=0.028 Score=50.08 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=33.3
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+++||+++|.|+++.+|+.++..|+++|++|+++.++
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~ 38 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRD 38 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCC
Confidence 4789999999999999999999999999998888654
No 273
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=94.91 E-value=0.076 Score=48.00 Aligned_cols=37 Identities=32% Similarity=0.442 Sum_probs=33.2
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~ 42 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIH 42 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4789999999999889999999999999999887654
No 274
>PRK08628 short chain dehydrogenase; Provisional
Probab=94.90 E-value=0.041 Score=49.44 Aligned_cols=39 Identities=26% Similarity=0.358 Sum_probs=34.7
Q ss_pred CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+++++||+++|.|+++.+|+.++..|+++|+.|.++.+.
T Consensus 2 ~~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~ 40 (258)
T PRK08628 2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRS 40 (258)
T ss_pred CCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCC
Confidence 467899999999999999999999999999998877644
No 275
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=94.90 E-value=0.038 Score=53.36 Aligned_cols=76 Identities=28% Similarity=0.418 Sum_probs=52.9
Q ss_pred cEEEEEcCCccchHHHHHHHhhC-CCeEE-EEcCCC---C--------------------ChhhhccCCcEEEEecCCCC
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKA-DATVT-IVHSHT---T--------------------DPESIVREADIVIAAAGQAM 222 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~-gatVt-v~~~~t---~--------------------~l~~~~~~ADIVIsa~g~p~ 222 (299)
.+|.|+|++|.+|+-++.+|.+. +.++. ++.++. + +..+...++|+||.|++..-
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~ 80 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV 80 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence 37999999999999999999877 56766 545331 1 11233357999999997432
Q ss_pred --cCCCCccCCCeEEEEeeccCC
Q 022295 223 --MIKGSWIKPGAAVIDVGTNAV 243 (299)
Q Consensus 223 --~i~~~~vk~gavVIDvg~~~~ 243 (299)
-+-+...+.|..|||.+..+.
T Consensus 81 s~~~~~~~~~~G~~VIDlS~~fR 103 (346)
T TIGR01850 81 SAELAPELLAAGVKVIDLSADFR 103 (346)
T ss_pred HHHHHHHHHhCCCEEEeCChhhh
Confidence 123334567999999998754
No 276
>PRK08265 short chain dehydrogenase; Provisional
Probab=94.90 E-value=0.034 Score=50.45 Aligned_cols=37 Identities=35% Similarity=0.527 Sum_probs=33.6
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~ 39 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDID 39 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4689999999998889999999999999999988765
No 277
>PRK05867 short chain dehydrogenase; Provisional
Probab=94.90 E-value=0.028 Score=50.58 Aligned_cols=37 Identities=38% Similarity=0.581 Sum_probs=33.6
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~ 42 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARH 42 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 4789999999998888999999999999999988765
No 278
>PRK08223 hypothetical protein; Validated
Probab=94.90 E-value=0.052 Score=51.33 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=30.3
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEc
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVH 198 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~ 198 (299)
.|+.++|+|||.|+. |-+++..|+..|. ++++++
T Consensus 24 kL~~s~VlIvG~GGL-Gs~va~~LA~aGVG~i~lvD 58 (287)
T PRK08223 24 RLRNSRVAIAGLGGV-GGIHLLTLARLGIGKFTIAD 58 (287)
T ss_pred HHhcCCEEEECCCHH-HHHHHHHHHHhCCCeEEEEe
Confidence 467899999999995 9999999999996 788886
No 279
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=94.89 E-value=0.065 Score=51.23 Aligned_cols=94 Identities=19% Similarity=0.199 Sum_probs=63.0
Q ss_pred ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC---------------------hh
Q 022295 147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD---------------------PE 205 (299)
Q Consensus 147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~---------------------l~ 205 (299)
+||.....+..+...+....|.+++|.|.|. +|..+++++...|+.|+++.+.... +.
T Consensus 161 l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~-vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~ 239 (357)
T PLN02514 161 LLCAGVTVYSPLSHFGLKQSGLRGGILGLGG-VGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQ 239 (357)
T ss_pred hhhhHHHHHHHHHHcccCCCCCeEEEEcccH-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHH
Confidence 3444444555566556656899999999765 6999999999999987666432111 11
Q ss_pred hhccCCcEEEEecCCCCcCC--CCccCCCeEEEEeecc
Q 022295 206 SIVREADIVIAAAGQAMMIK--GSWIKPGAAVIDVGTN 241 (299)
Q Consensus 206 ~~~~~ADIVIsa~g~p~~i~--~~~vk~gavVIDvg~~ 241 (299)
+.....|++|-++|.+..+. -+.++++..++.+|..
T Consensus 240 ~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~ 277 (357)
T PLN02514 240 EAADSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVI 277 (357)
T ss_pred HhcCCCcEEEECCCchHHHHHHHHHhccCCEEEEECCC
Confidence 22334699998888654321 2567888888889864
No 280
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=94.89 E-value=0.035 Score=50.25 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=33.4
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~ 38 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKS 38 (262)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 3679999999999889999999999999999988764
No 281
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=94.88 E-value=0.072 Score=49.40 Aligned_cols=94 Identities=18% Similarity=0.061 Sum_probs=62.0
Q ss_pred ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------------CCChhhh
Q 022295 147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------------TTDPESI 207 (299)
Q Consensus 147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------------t~~l~~~ 207 (299)
+|+.+...+..|.+....-.|.+++|.|+++.||..+++++...|++|+.+.+. +.++.+.
T Consensus 124 ~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~ 203 (329)
T cd08294 124 LGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEA 203 (329)
T ss_pred cccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHH
Confidence 455555566666544444578999999987888999999999999987765432 1222222
Q ss_pred c-----cCCcEEEEecCCCCcC-CCCccCCCeEEEEeec
Q 022295 208 V-----READIVIAAAGQAMMI-KGSWIKPGAAVIDVGT 240 (299)
Q Consensus 208 ~-----~~ADIVIsa~g~p~~i-~~~~vk~gavVIDvg~ 240 (299)
+ +..|+|+.++|.+.+- .-+.++++..++.+|.
T Consensus 204 v~~~~~~gvd~vld~~g~~~~~~~~~~l~~~G~iv~~g~ 242 (329)
T cd08294 204 LKEAAPDGIDCYFDNVGGEFSSTVLSHMNDFGRVAVCGS 242 (329)
T ss_pred HHHHCCCCcEEEEECCCHHHHHHHHHhhccCCEEEEEcc
Confidence 1 2368888888764321 2345677777888774
No 282
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=94.88 E-value=0.14 Score=50.35 Aligned_cols=76 Identities=24% Similarity=0.374 Sum_probs=56.1
Q ss_pred cCCHHHHHHHHHhh---CCCcCCcEEEEEcCC----------------ccchHHHHHHHhhCCCeEEEEcCCC-------
Q 022295 148 PCTPKGCLELLKRS---GVTIKGKRAVVVGRS----------------NIVGLPVSLLLLKADATVTIVHSHT------- 201 (299)
Q Consensus 148 PcT~~av~~ll~~~---~~~l~gk~vvViG~s----------------~~vG~pla~lL~~~gatVtv~~~~t------- 201 (299)
++++.-++..+.+. +-+++||+|+|-|.+ |-.|..+|..|..+||+|++++...
T Consensus 163 ~~~~~~i~~~v~~~~~~~~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~~~~~ 242 (390)
T TIGR00521 163 LAEPETIVKAAEREFSPKEDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLLTPPG 242 (390)
T ss_pred CCCHHHHHHHHHHHHhhccccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccCCCCC
Confidence 67788877766643 246999999999862 4469999999999999999987532
Q ss_pred ---------CCh-h----hhccCCcEEEEecCCCCc
Q 022295 202 ---------TDP-E----SIVREADIVIAAAGQAMM 223 (299)
Q Consensus 202 ---------~~l-~----~~~~~ADIVIsa~g~p~~ 223 (299)
.++ . +...+.|++|.+++...+
T Consensus 243 ~~~~~v~~~~~~~~~~~~~~~~~~D~~i~~Aavsd~ 278 (390)
T TIGR00521 243 VKSIKVSTAEEMLEAALNELAKDFDIFISAAAVADF 278 (390)
T ss_pred cEEEEeccHHHHHHHHHHhhcccCCEEEEccccccc
Confidence 122 1 223468999998887655
No 283
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=94.88 E-value=0.046 Score=49.28 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=34.1
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.+++||+++|.|+++-+|+.++..|+++|++|.++.+.
T Consensus 11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred ccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 35789999999999999999999999999999888654
No 284
>PRK06172 short chain dehydrogenase; Provisional
Probab=94.87 E-value=0.029 Score=50.25 Aligned_cols=37 Identities=27% Similarity=0.415 Sum_probs=33.7
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+++||+++|.|+++.+|+.++..|+++|++|.++.++
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~ 40 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRD 40 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 4789999999999999999999999999999888765
No 285
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=94.86 E-value=0.055 Score=53.11 Aligned_cols=71 Identities=25% Similarity=0.329 Sum_probs=51.2
Q ss_pred EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------------------------CChhhhccCCcEEEE
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------------------------TDPESIVREADIVIA 216 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------------------------~~l~~~~~~ADIVIs 216 (299)
+|.|||.|- ||.|+|.+|+. |.+|+.++.+. .+..+..++||+||.
T Consensus 2 kI~VIGlGy-vGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 2 KITISGTGY-VGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred EEEEECCCH-HHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 589999776 59999988774 89999997531 123345689999999
Q ss_pred ecCCCC----------cCC------CCccCCCeEEEEeeccC
Q 022295 217 AAGQAM----------MIK------GSWIKPGAAVIDVGTNA 242 (299)
Q Consensus 217 a~g~p~----------~i~------~~~vk~gavVIDvg~~~ 242 (299)
+++.|- .+. .. +++|.+||+-++-+
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~ 120 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVP 120 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecC
Confidence 999771 110 12 47899999877654
No 286
>PRK06057 short chain dehydrogenase; Provisional
Probab=94.86 E-value=0.03 Score=50.38 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=33.2
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
++||+++|+|+++-+|+.++..|+++|++|.++.++
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~ 40 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDID 40 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 789999999999999999999999999999988765
No 287
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=94.83 E-value=0.035 Score=53.02 Aligned_cols=75 Identities=16% Similarity=0.249 Sum_probs=52.5
Q ss_pred cEEEEEcCCccchHHHHHHHhhCC-CeEEEEcCCC----CChhhhccCCcEEEEecCCC---CcCCCCccCCCeEEEEee
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSHT----TDPESIVREADIVIAAAGQA---MMIKGSWIKPGAAVIDVG 239 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~t----~~l~~~~~~ADIVIsa~g~p---~~i~~~~vk~gavVIDvg 239 (299)
-+|.|+|++|..|.-+.++|.++. .++.-..++. .+..+.+.++|++|.|++.- .++ +...+.|..|||.+
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~~~~~~~~~~~~~D~vFlalp~~~s~~~~-~~~~~~g~~VIDlS 80 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRKDAAERAKLLNAADVAILCLPDDAAREAV-SLVDNPNTCIIDAS 80 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccccCcCCHhHhhcCCCEEEECCCHHHHHHHH-HHHHhCCCEEEECC
Confidence 379999999999999999999875 4444333322 23445568899999998632 122 22345689999999
Q ss_pred ccCC
Q 022295 240 TNAV 243 (299)
Q Consensus 240 ~~~~ 243 (299)
..+.
T Consensus 81 adfR 84 (310)
T TIGR01851 81 TAYR 84 (310)
T ss_pred hHHh
Confidence 7754
No 288
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.79 E-value=0.066 Score=50.22 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=50.8
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC--------------------------------------CCChhhhcc
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH--------------------------------------TTDPESIVR 209 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~--------------------------------------t~~l~~~~~ 209 (299)
++|.|||+|.+ |.++|..|+..|..|++.+.. +.++ +.++
T Consensus 6 ~~V~ViGaG~m-G~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~ 83 (286)
T PRK07819 6 QRVGVVGAGQM-GAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFA 83 (286)
T ss_pred cEEEEEcccHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhC
Confidence 48999998775 999999999999999999744 1233 4578
Q ss_pred CCcEEEEecCC-CC----cC-C-CCcc-CCCeEEEEeec
Q 022295 210 EADIVIAAAGQ-AM----MI-K-GSWI-KPGAAVIDVGT 240 (299)
Q Consensus 210 ~ADIVIsa~g~-p~----~i-~-~~~v-k~gavVIDvg~ 240 (299)
+||+||-++.- .. ++ . ..+. +|++++..-..
T Consensus 84 ~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS 122 (286)
T PRK07819 84 DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTS 122 (286)
T ss_pred CCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 99999988762 21 11 1 1334 67887766443
No 289
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=94.79 E-value=0.025 Score=53.87 Aligned_cols=91 Identities=20% Similarity=0.289 Sum_probs=65.6
Q ss_pred HHHHHHHHHh----------hCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC--------------------
Q 022295 151 PKGCLELLKR----------SGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------------- 200 (299)
Q Consensus 151 ~~av~~ll~~----------~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------------- 200 (299)
..+++..+-. .+...++.+++++|.|-+ |-.++..-...|+-||-..-+
T Consensus 138 y~aVi~Aa~a~~rffpm~~TAagtv~pA~vlv~G~Gva-gl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~e 216 (356)
T COG3288 138 YIAVIGAALAYGRFFPMQITAAGTVSPAKVLVIGAGVA-GLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDE 216 (356)
T ss_pred HHHHHHHHHHhhhcccchhhhcccccchhhhhhhHHHH-HHHHHHHHhhcceEEehhhhhhHHhhhhhhccccccccccc
Confidence 4567777766 345678889999998765 877776666667777655321
Q ss_pred ----------C--------CChhhhccCCcEEEEecC-----CCCcCCCCcc---CCCeEEEEeeccC
Q 022295 201 ----------T--------TDPESIVREADIVIAAAG-----QAMMIKGSWI---KPGAAVIDVGTNA 242 (299)
Q Consensus 201 ----------t--------~~l~~~~~~ADIVIsa~g-----~p~~i~~~~v---k~gavVIDvg~~~ 242 (299)
+ .-+.++.++.|||||..= .|.+++.+|+ |||++++|+....
T Consensus 217 e~~gGYAk~ms~~~~~~q~~~~a~~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa~~ 284 (356)
T COG3288 217 ESAGGYAKEMSEEFIAKQAELVAEQAKEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAAET 284 (356)
T ss_pred ccCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEecccCCCCCchhhHHHHHHhcCCCcEEEEehhhc
Confidence 0 113488999999998763 3558999996 9999999998753
No 290
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.77 E-value=0.073 Score=51.06 Aligned_cols=51 Identities=22% Similarity=0.180 Sum_probs=42.9
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC----------------------------------CCChhhhccCCcE
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH----------------------------------TTDPESIVREADI 213 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~----------------------------------t~~l~~~~~~ADI 213 (299)
++|.|||+|-+ |..+|..++..|..|++.+.. +.++.+.+.+||+
T Consensus 8 ~~VaVIGaG~M-G~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl 86 (321)
T PRK07066 8 KTFAAIGSGVI-GSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF 86 (321)
T ss_pred CEEEEECcCHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence 68999998765 999999999999999998642 2356678899999
Q ss_pred EEEecC
Q 022295 214 VIAAAG 219 (299)
Q Consensus 214 VIsa~g 219 (299)
||-++.
T Consensus 87 ViEavp 92 (321)
T PRK07066 87 IQESAP 92 (321)
T ss_pred EEECCc
Confidence 998876
No 291
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.77 E-value=0.051 Score=48.92 Aligned_cols=37 Identities=24% Similarity=0.440 Sum_probs=32.8
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~ 40 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNS 40 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4689999999999999999999999999998877543
No 292
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.75 E-value=0.042 Score=51.29 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=28.5
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
++|.|||.|.+ |.++|..|++.|..|++++.+
T Consensus 4 ~~I~ViGaG~m-G~~iA~~la~~G~~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVM-GQGIAQVFARTGYDVTIVDVS 35 (291)
T ss_pred cEEEEECccHH-HHHHHHHHHhcCCeEEEEeCC
Confidence 68999998875 999999999999999999754
No 293
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=94.75 E-value=0.047 Score=52.62 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=30.8
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHS 199 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~ 199 (299)
.|++++|+|||.|+. |.++|..|+..|. ++++++.
T Consensus 21 ~L~~~~VlIiG~Ggl-Gs~va~~La~aGvg~i~lvD~ 56 (338)
T PRK12475 21 KIREKHVLIVGAGAL-GAANAEALVRAGIGKLTIADR 56 (338)
T ss_pred hhcCCcEEEECCCHH-HHHHHHHHHHcCCCEEEEEcC
Confidence 468899999999885 9999999999996 8888864
No 294
>PRK07890 short chain dehydrogenase; Provisional
Probab=94.71 E-value=0.032 Score=50.00 Aligned_cols=36 Identities=28% Similarity=0.356 Sum_probs=32.7
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+++|+++|.|+++.+|+.++..|+++|++|+++.++
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~ 38 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAART 38 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 578999999999999999999999999999888654
No 295
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=94.68 E-value=0.052 Score=48.39 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=42.6
Q ss_pred EEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-----------------------CChhhhccCCcEEEEecCCC
Q 022295 170 AVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-----------------------TDPESIVREADIVIAAAGQA 221 (299)
Q Consensus 170 vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-----------------------~~l~~~~~~ADIVIsa~g~p 221 (299)
|+|+|++|.+|++++..|++.+.+|+++.|.. ..+.+.++.+|.||..++..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 68999988899999999999999999987753 13456788889988888843
No 296
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.66 E-value=0.051 Score=49.95 Aligned_cols=34 Identities=35% Similarity=0.512 Sum_probs=30.0
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEc
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVH 198 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~ 198 (299)
.|+.++|+|||.|++ |.+++..|+..|. ++++++
T Consensus 29 ~L~~~~VliiG~Ggl-Gs~va~~La~~Gvg~i~lvD 63 (245)
T PRK05690 29 KLKAARVLVVGLGGL-GCAASQYLAAAGVGTLTLVD 63 (245)
T ss_pred HhcCCeEEEECCCHH-HHHHHHHHHHcCCCEEEEEc
Confidence 468899999999885 9999999999996 788885
No 297
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.66 E-value=0.081 Score=53.01 Aligned_cols=123 Identities=15% Similarity=0.174 Sum_probs=73.7
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-Chhh--hccCCcEEEEecCC-CCcCCCCccCCCeEEEEeec
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-DPES--IVREADIVIAAAGQ-AMMIKGSWIKPGAAVIDVGT 240 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-~l~~--~~~~ADIVIsa~g~-p~~i~~~~vk~gavVIDvg~ 240 (299)
+.||+|+|+|.|.. |++++.+|.++|+.|++.+.+.. +..+ .+++ ++...-.+. +..+. ....+|+--|+
T Consensus 6 ~~~~~v~v~G~G~s-G~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~----~~d~vV~SpgI 79 (468)
T PRK04690 6 LEGRRVALWGWGRE-GRAAYRALRAHLPAQALTLFCNAVEAREVGALAD-AALLVETEASAQRLA----AFDVVVKSPGI 79 (468)
T ss_pred cCCCEEEEEccchh-hHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhh-cCEEEeCCCChHHcc----CCCEEEECCCC
Confidence 46899999999987 99999999999999999985532 2221 2333 322222221 11121 23456666666
Q ss_pred cCCCCC---ccCCCceeeccCCc-hhh-hh-h--hceeccCCCCccHHHHHHHHHHHHHHH
Q 022295 241 NAVDDS---TKKSGYRLVGDVDF-HEA-CK-V--AGCVTPVPGGVGPMTVAMLLRNTLDGA 293 (299)
Q Consensus 241 ~~~~~~---~~~~g~kl~GDvdf-~~~-~~-~--a~~iTPVPGGVGp~T~a~L~~n~v~a~ 293 (299)
++.... -...|-.+.+++++ -.. .+ . ...+--|-|-.|.=|+.-|+.++++..
T Consensus 80 ~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~ 140 (468)
T PRK04690 80 SPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAA 140 (468)
T ss_pred CCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhc
Confidence 653110 00112257888886 211 11 0 011234669999999999999998764
No 298
>PRK12829 short chain dehydrogenase; Provisional
Probab=94.65 E-value=0.049 Score=48.87 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=33.7
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.+++|+++|.|+++.+|+.++..|+++|++|+++.+.
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 4789999999999999999999999999999888764
No 299
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=94.62 E-value=0.039 Score=49.67 Aligned_cols=38 Identities=32% Similarity=0.409 Sum_probs=34.3
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.+++||+++|.|+++.+|..++..|+++|++|+++.+.
T Consensus 8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~ 45 (259)
T PRK08213 8 FDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARK 45 (259)
T ss_pred hCcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 35789999999999999999999999999999988764
No 300
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=94.61 E-value=0.042 Score=44.46 Aligned_cols=75 Identities=24% Similarity=0.255 Sum_probs=47.2
Q ss_pred EEEEEcCCccchHHHHHHHhhC-CCeEEEE-cCCC---CC---------------hh-hhc--cCCcEEEEecCCCCc--
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKA-DATVTIV-HSHT---TD---------------PE-SIV--READIVIAAAGQAMM-- 223 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~-gatVtv~-~~~t---~~---------------l~-~~~--~~ADIVIsa~g~p~~-- 223 (299)
++.|+|.++.+|+-++..|... +.+++.+ .++. +. .. +.+ .++|+||.+++....
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~ 80 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE 80 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence 4678887777788888877774 6665554 2210 00 00 112 479999999985432
Q ss_pred -CC--CCccCCCeEEEEeeccCC
Q 022295 224 -IK--GSWIKPGAAVIDVGTNAV 243 (299)
Q Consensus 224 -i~--~~~vk~gavVIDvg~~~~ 243 (299)
+. ...+++|.+|||++....
T Consensus 81 ~~~~~~~~~~~g~~viD~s~~~~ 103 (122)
T smart00859 81 IAPLLPKAAEAGVKVIDLSSAFR 103 (122)
T ss_pred HHHHHHhhhcCCCEEEECCcccc
Confidence 11 223578999999997653
No 301
>PRK09186 flagellin modification protein A; Provisional
Probab=94.61 E-value=0.042 Score=49.14 Aligned_cols=36 Identities=22% Similarity=0.429 Sum_probs=32.5
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~ 37 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADID 37 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecC
Confidence 578999999999889999999999999999888654
No 302
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=94.61 E-value=0.085 Score=52.85 Aligned_cols=53 Identities=28% Similarity=0.305 Sum_probs=44.4
Q ss_pred ccCCHHHHHHHH----HhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEE-EEcCC
Q 022295 147 LPCTPKGCLELL----KRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVT-IVHSH 200 (299)
Q Consensus 147 ~PcT~~av~~ll----~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVt-v~~~~ 200 (299)
-++|.+|++..+ ++.+.+++||+|+|=|.|+ ||..+|..|.+.||+|. +++++
T Consensus 213 ~eATG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~Gn-Vg~~aa~~L~e~GakVVavSD~~ 270 (454)
T PTZ00079 213 PEATGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGN-VAQYAVEKLLQLGAKVLTMSDSD 270 (454)
T ss_pred CcccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEEcCC
Confidence 457998876554 5568899999999999877 69999999999999877 88765
No 303
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=94.60 E-value=0.092 Score=49.40 Aligned_cols=94 Identities=17% Similarity=0.082 Sum_probs=61.3
Q ss_pred ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC---------------------CChh
Q 022295 147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT---------------------TDPE 205 (299)
Q Consensus 147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t---------------------~~l~ 205 (299)
+||.....+..|.+..---.|.+|+|.|+++.||..+++++...|++|+.+.+.. .++.
T Consensus 132 l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~ 211 (338)
T cd08295 132 LGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLD 211 (338)
T ss_pred cccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHH
Confidence 4555555666665544445799999999978889999999999999876644321 1222
Q ss_pred hhc-----cCCcEEEEecCCCCcC-CCCccCCCeEEEEeec
Q 022295 206 SIV-----READIVIAAAGQAMMI-KGSWIKPGAAVIDVGT 240 (299)
Q Consensus 206 ~~~-----~~ADIVIsa~g~p~~i-~~~~vk~gavVIDvg~ 240 (299)
+.+ ..+|+++.++|...+- .-++++++..++.+|.
T Consensus 212 ~~i~~~~~~gvd~v~d~~g~~~~~~~~~~l~~~G~iv~~G~ 252 (338)
T cd08295 212 AALKRYFPNGIDIYFDNVGGKMLDAVLLNMNLHGRIAACGM 252 (338)
T ss_pred HHHHHhCCCCcEEEEECCCHHHHHHHHHHhccCcEEEEecc
Confidence 211 2467888777753221 2355777777778774
No 304
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.59 E-value=0.092 Score=49.83 Aligned_cols=53 Identities=23% Similarity=0.364 Sum_probs=41.2
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC--------------------------CCChhhhccCCcEEEEecCC
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH--------------------------TTDPESIVREADIVIAAAGQ 220 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~--------------------------t~~l~~~~~~ADIVIsa~g~ 220 (299)
++|.|||.|. ||..+|..|+.+|. .|++++.. +.++.+ +++||+||.++|.
T Consensus 2 ~KV~VIGaG~-vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~ 79 (305)
T TIGR01763 2 KKISVIGAGF-VGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGL 79 (305)
T ss_pred CEEEEECcCH-HHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCC
Confidence 4799999866 69999999998874 78888642 234434 8999999999996
Q ss_pred CC
Q 022295 221 AM 222 (299)
Q Consensus 221 p~ 222 (299)
|.
T Consensus 80 p~ 81 (305)
T TIGR01763 80 PR 81 (305)
T ss_pred CC
Confidence 64
No 305
>PRK05872 short chain dehydrogenase; Provisional
Probab=94.59 E-value=0.034 Score=51.71 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=34.2
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~ 42 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLE 42 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 35789999999999989999999999999999988764
No 306
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=94.58 E-value=0.03 Score=54.06 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=54.2
Q ss_pred CCcEEEEEcCCccchHHHHHHHhhC---CCeEEEEcCCC---------------CChhhh-ccCCcEEEEecCCCC--cC
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLLKA---DATVTIVHSHT---------------TDPESI-VREADIVIAAAGQAM--MI 224 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~~~---gatVtv~~~~t---------------~~l~~~-~~~ADIVIsa~g~p~--~i 224 (299)
++.+|.|||++|.||+-+..+|.++ ..++....|.. .++.+. ..++|++|.|+|.-- -+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~~s~~~ 82 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGREASAAY 82 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHHHHHHH
Confidence 4578999999999999999999984 35666665431 122222 267899999986421 12
Q ss_pred CCCccCCCeEEEEeeccCC
Q 022295 225 KGSWIKPGAAVIDVGTNAV 243 (299)
Q Consensus 225 ~~~~vk~gavVIDvg~~~~ 243 (299)
-++..+.|+.|||.+..+.
T Consensus 83 ~~~~~~~g~~VIDlS~~fR 101 (336)
T PRK08040 83 AEEATNAGCLVIDSSGLFA 101 (336)
T ss_pred HHHHHHCCCEEEECChHhc
Confidence 3334567999999997654
No 307
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=94.56 E-value=0.14 Score=47.34 Aligned_cols=94 Identities=17% Similarity=0.197 Sum_probs=62.4
Q ss_pred ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------CChh--
Q 022295 147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------------TDPE-- 205 (299)
Q Consensus 147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------------~~l~-- 205 (299)
+|+.+..++..++... --.|.+++|.|.++.+|..+++++...|++|+++.+.. .++.
T Consensus 121 ~~~~~~ta~~~~~~~~-~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 199 (324)
T cd08292 121 LIAMPLSALMLLDFLG-VKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRALGIGPVVSTEQPGWQDK 199 (324)
T ss_pred ccccHHHHHHHHHhhC-CCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHhcCCCEEEcCCCchHHHH
Confidence 4455555555554432 33689999999988899999999999999876664321 1111
Q ss_pred --hhc--cCCcEEEEecCCCCcC-CCCccCCCeEEEEeecc
Q 022295 206 --SIV--READIVIAAAGQAMMI-KGSWIKPGAAVIDVGTN 241 (299)
Q Consensus 206 --~~~--~~ADIVIsa~g~p~~i-~~~~vk~gavVIDvg~~ 241 (299)
+.+ +..|+|+.++|.+..- --..++++..++++|..
T Consensus 200 i~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~ 240 (324)
T cd08292 200 VREAAGGAPISVALDSVGGKLAGELLSLLGEGGTLVSFGSM 240 (324)
T ss_pred HHHHhCCCCCcEEEECCCChhHHHHHHhhcCCcEEEEEecC
Confidence 122 2489999888875321 12456788888998853
No 308
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=94.54 E-value=0.097 Score=50.70 Aligned_cols=94 Identities=20% Similarity=0.229 Sum_probs=63.4
Q ss_pred ccCCHHHHHHHHHhhCCC-cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC---------------------h
Q 022295 147 LPCTPKGCLELLKRSGVT-IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD---------------------P 204 (299)
Q Consensus 147 ~PcT~~av~~ll~~~~~~-l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~---------------------l 204 (299)
++|.....+..+.+.+.. -.|..|+|.|.|. +|..+++++...|++|+++.+.... +
T Consensus 158 l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~-vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v 236 (375)
T PLN02178 158 LLCAGITVYSPMKYYGMTKESGKRLGVNGLGG-LGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKM 236 (375)
T ss_pred hhccchHHHHHHHHhCCCCCCCCEEEEEcccH-HHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHH
Confidence 455555556666655543 3689999999765 6999999999999987766432111 1
Q ss_pred hhhccCCcEEEEecCCCCcC--CCCccCCCeEEEEeecc
Q 022295 205 ESIVREADIVIAAAGQAMMI--KGSWIKPGAAVIDVGTN 241 (299)
Q Consensus 205 ~~~~~~ADIVIsa~g~p~~i--~~~~vk~gavVIDvg~~ 241 (299)
.+.+..+|+||.++|.+..+ --+.++++..++.+|..
T Consensus 237 ~~~~~~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~ 275 (375)
T PLN02178 237 KEAVGTMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLP 275 (375)
T ss_pred HHhhCCCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccC
Confidence 11223479999998876432 23557888888888864
No 309
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=94.54 E-value=0.05 Score=49.26 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=33.3
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS 199 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~ 199 (299)
.+++||+++|.|++.-+|+.++..|+++|++|+++.+
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~ 40 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYN 40 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 3578999999999999999999999999999988754
No 310
>PRK08703 short chain dehydrogenase; Provisional
Probab=94.53 E-value=0.046 Score=48.63 Aligned_cols=38 Identities=34% Similarity=0.385 Sum_probs=34.3
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT 201 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t 201 (299)
+++||+++|.|.++.+|+.++..|+++|++|+++.++.
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~ 40 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQ 40 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 47899999999999999999999999999999887654
No 311
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=94.50 E-value=0.071 Score=50.41 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=30.6
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCC--CeEEEEcC
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKAD--ATVTIVHS 199 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~g--atVtv~~~ 199 (299)
++||+++|.|+++.+|+.++..|+++| ++|+++.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r 38 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSR 38 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 578999999999999999999999886 68887754
No 312
>PRK07060 short chain dehydrogenase; Provisional
Probab=94.49 E-value=0.049 Score=48.26 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=34.1
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.+++|++++|.|+++.+|+.++..|+++|++|.++.++
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~ 42 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARN 42 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCC
Confidence 45789999999998888999999999999999988765
No 313
>PRK06223 malate dehydrogenase; Reviewed
Probab=94.48 E-value=0.1 Score=49.07 Aligned_cols=53 Identities=26% Similarity=0.398 Sum_probs=41.3
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC--------------------------CCChhhhccCCcEEEEecCC
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH--------------------------TTDPESIVREADIVIAAAGQ 220 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~--------------------------t~~l~~~~~~ADIVIsa~g~ 220 (299)
++|.|||+|. ||..+|..|+..|. +|.+.+.. +.+. +.+++||+||.++|.
T Consensus 3 ~KI~VIGaG~-vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~ 80 (307)
T PRK06223 3 KKISIIGAGN-VGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGV 80 (307)
T ss_pred CEEEEECCCH-HHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCC
Confidence 5899999855 69999999998764 88888743 1233 568999999999987
Q ss_pred CC
Q 022295 221 AM 222 (299)
Q Consensus 221 p~ 222 (299)
|.
T Consensus 81 p~ 82 (307)
T PRK06223 81 PR 82 (307)
T ss_pred CC
Confidence 64
No 314
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.48 E-value=0.08 Score=52.58 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=32.4
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
++||+|.|+|.|+. |+++|.+|.++|++|++++..
T Consensus 7 ~~~~~i~viG~G~~-G~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 7 FAGKTVAVFGLGGS-GLATARALVAGGAEVIAWDDN 41 (460)
T ss_pred cCCCEEEEEeecHh-HHHHHHHHHHCCCEEEEECCC
Confidence 67899999999997 999999999999999999865
No 315
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.47 E-value=0.09 Score=50.55 Aligned_cols=71 Identities=18% Similarity=0.311 Sum_probs=54.5
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC----------------------------CCChhhhccCCcEEEEecC
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH----------------------------TTDPESIVREADIVIAAAG 219 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~----------------------------t~~l~~~~~~ADIVIsa~g 219 (299)
++|.|+|+|.- |.++|..|.+.|..|++--++ |.|+.+.++.||+|+.+++
T Consensus 2 ~kI~ViGaGsw-GTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP 80 (329)
T COG0240 2 MKIAVIGAGSW-GTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP 80 (329)
T ss_pred ceEEEEcCChH-HHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC
Confidence 57999998775 999999999999888877532 4578899999999999998
Q ss_pred CCCc---CC--CCccCCCeEEEEee
Q 022295 220 QAMM---IK--GSWIKPGAAVIDVG 239 (299)
Q Consensus 220 ~p~~---i~--~~~vk~gavVIDvg 239 (299)
+-.+ ++ +..+++++.++-+.
T Consensus 81 s~~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 81 SQALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred hHHHHHHHHHHhhhccCCCeEEEEe
Confidence 6432 11 25567777776653
No 316
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.46 E-value=0.055 Score=50.48 Aligned_cols=67 Identities=24% Similarity=0.311 Sum_probs=49.4
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------------------------------CChhhhcc
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------------------------------TDPESIVR 209 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------------------------------~~l~~~~~ 209 (299)
++|.|||.|.+ |.++|..|+..|.+|++.+++. .++ +.+.
T Consensus 5 ~kI~vIGaG~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 82 (292)
T PRK07530 5 KKVGVIGAGQM-GNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDL-EDLA 82 (292)
T ss_pred CEEEEECCcHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCH-HHhc
Confidence 68999998775 9999999999999999987542 122 3467
Q ss_pred CCcEEEEecCCC-C----cCC--CCccCCCeEEE
Q 022295 210 EADIVIAAAGQA-M----MIK--GSWIKPGAAVI 236 (299)
Q Consensus 210 ~ADIVIsa~g~p-~----~i~--~~~vk~gavVI 236 (299)
+||+||.+++.. . ++. ...++++++++
T Consensus 83 ~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 83 DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 899999999743 2 121 13467788776
No 317
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.45 E-value=0.096 Score=50.20 Aligned_cols=54 Identities=17% Similarity=0.388 Sum_probs=40.9
Q ss_pred EEEEEcCCccchHHHHHHHhhCC-C------eEEEEcCCC--------------------------CChhhhccCCcEEE
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKAD-A------TVTIVHSHT--------------------------TDPESIVREADIVI 215 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~g-a------tVtv~~~~t--------------------------~~l~~~~~~ADIVI 215 (299)
+|+|+|++|.||..++..|...+ + .+.+.+.+. .+..+.+++||+||
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 79999996778999999998765 2 266665432 23447899999999
Q ss_pred EecCCCC
Q 022295 216 AAAGQAM 222 (299)
Q Consensus 216 sa~g~p~ 222 (299)
.+.|.|.
T Consensus 82 itAG~~~ 88 (323)
T cd00704 82 LVGAFPR 88 (323)
T ss_pred EeCCCCC
Confidence 9999764
No 318
>PRK06841 short chain dehydrogenase; Provisional
Probab=94.44 E-value=0.064 Score=47.99 Aligned_cols=38 Identities=26% Similarity=0.418 Sum_probs=34.0
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.+++||+++|.|+++-+|..++..|+++|++|.++.+.
T Consensus 11 ~~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~ 48 (255)
T PRK06841 11 FDLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRS 48 (255)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 35789999999999989999999999999999888764
No 319
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.42 E-value=0.083 Score=53.38 Aligned_cols=53 Identities=21% Similarity=0.234 Sum_probs=43.4
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC----------------------------------CCChhhhccCCcE
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH----------------------------------TTDPESIVREADI 213 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~----------------------------------t~~l~~~~~~ADI 213 (299)
++|.|||.|.+ |.++|..|++.|..|++++.+ +.++.+.+++||+
T Consensus 5 ~kIavIG~G~M-G~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~ 83 (495)
T PRK07531 5 MKAACIGGGVI-GGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADW 83 (495)
T ss_pred CEEEEECcCHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCE
Confidence 57999998775 999999999999999998743 1245567899999
Q ss_pred EEEecCCC
Q 022295 214 VIAAAGQA 221 (299)
Q Consensus 214 VIsa~g~p 221 (299)
||.++.-.
T Consensus 84 Vieavpe~ 91 (495)
T PRK07531 84 IQESVPER 91 (495)
T ss_pred EEEcCcCC
Confidence 99988743
No 320
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=94.41 E-value=0.098 Score=46.64 Aligned_cols=38 Identities=26% Similarity=0.370 Sum_probs=33.7
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.++++|+++|.|+++-+|+.++..|+++|+.|+++.++
T Consensus 4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~ 41 (252)
T PRK08220 4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQA 41 (252)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence 35789999999999989999999999999999888654
No 321
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.41 E-value=0.1 Score=52.46 Aligned_cols=123 Identities=16% Similarity=0.295 Sum_probs=69.9
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-ChhhhccCC--cEEEEecC--CCCcCCCCccCCCeEEEEee
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-DPESIVREA--DIVIAAAG--QAMMIKGSWIKPGAAVIDVG 239 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-~l~~~~~~A--DIVIsa~g--~p~~i~~~~vk~gavVIDvg 239 (299)
+.+|+|.|+|-|+. |+++|++|.++|+.|+.++++.. ...+.++.. .+-+. .| .|..++ ....+|+.-|
T Consensus 5 ~~~~~i~v~G~G~s-G~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~-~g~~~~~~~~----~~d~vv~sp~ 78 (498)
T PRK02006 5 LQGPMVLVLGLGES-GLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFV-GGPFDPALLD----GVDLVALSPG 78 (498)
T ss_pred cCCCEEEEEeecHh-HHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEE-eCCCchhHhc----CCCEEEECCC
Confidence 56899999999997 99999999999999999986532 111223222 11111 11 111121 1245566666
Q ss_pred ccCCCC---C----ccCCCceeeccCCchh-hhhh------hceeccCCCCccHHHHHHHHHHHHHHH
Q 022295 240 TNAVDD---S----TKKSGYRLVGDVDFHE-ACKV------AGCVTPVPGGVGPMTVAMLLRNTLDGA 293 (299)
Q Consensus 240 ~~~~~~---~----~~~~g~kl~GDvdf~~-~~~~------a~~iTPVPGGVGp~T~a~L~~n~v~a~ 293 (299)
+++... + -...|-++.++.++-. ..+. ...+--|-|=-|.=|+..|+.++++.+
T Consensus 79 I~~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~ 146 (498)
T PRK02006 79 LSPLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERA 146 (498)
T ss_pred CCCcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence 654210 0 0001225667766522 1110 001123568889999999999998764
No 322
>PRK06125 short chain dehydrogenase; Provisional
Probab=94.40 E-value=0.045 Score=49.39 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=33.4
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+++||+++|.|.++-+|+.++..|+++|++|.++.++
T Consensus 4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~ 40 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARD 40 (259)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 4789999999998888999999999999999988754
No 323
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=94.40 E-value=0.08 Score=47.10 Aligned_cols=34 Identities=35% Similarity=0.498 Sum_probs=31.0
Q ss_pred CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+|+++|.|+++.+|+.++..|+++|++|+++.++
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~ 34 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLG 34 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCC
Confidence 5789999999999999999999999999998765
No 324
>PRK08264 short chain dehydrogenase; Validated
Probab=94.39 E-value=0.059 Score=47.72 Aligned_cols=38 Identities=29% Similarity=0.312 Sum_probs=33.8
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT 201 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t 201 (299)
.+.+++++|+|+++-+|+.++..|+++|+ .|+++.+..
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~ 41 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDP 41 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecCh
Confidence 36789999999999999999999999999 999888653
No 325
>PRK05854 short chain dehydrogenase; Provisional
Probab=94.39 E-value=0.04 Score=51.83 Aligned_cols=37 Identities=38% Similarity=0.468 Sum_probs=33.7
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+++||+++|.|++.-+|+.++..|+++|++|+++.++
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~ 47 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRN 47 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 5789999999999989999999999999999988664
No 326
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=94.39 E-value=0.12 Score=48.40 Aligned_cols=35 Identities=29% Similarity=0.193 Sum_probs=31.0
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS 199 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~ 199 (299)
..||+|+|.|+++.+|+.++..|+++|.+|+.+.+
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r 37 (322)
T PLN02986 3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVR 37 (322)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 46899999999999999999999999999886543
No 327
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=94.38 E-value=0.07 Score=47.21 Aligned_cols=78 Identities=22% Similarity=0.348 Sum_probs=46.7
Q ss_pred cCCcEEEEEc----------------CCccchHHHHHHHhhCCCeEEEEcCCCC--------------------Chhhhc
Q 022295 165 IKGKRAVVVG----------------RSNIVGLPVSLLLLKADATVTIVHSHTT--------------------DPESIV 208 (299)
Q Consensus 165 l~gk~vvViG----------------~s~~vG~pla~lL~~~gatVtv~~~~t~--------------------~l~~~~ 208 (299)
|+||+|+|-+ .||-.|..+|..+..+||.|++.|..+. .+.+.+
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~~ 80 (185)
T PF04127_consen 1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKELL 80 (185)
T ss_dssp -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHHG
T ss_pred CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccccccceEEEecchhhhhhhhcccc
Confidence 4678888775 3556799999999999999999987631 133667
Q ss_pred cCCcEEEEecCCCCcCC----CCccCC---CeEEEEeeccC
Q 022295 209 READIVIAAAGQAMMIK----GSWIKP---GAAVIDVGTNA 242 (299)
Q Consensus 209 ~~ADIVIsa~g~p~~i~----~~~vk~---gavVIDvg~~~ 242 (299)
+++|++|.|+-...|-. ..-+++ ....+.+--+|
T Consensus 81 ~~~Di~I~aAAVsDf~p~~~~~~KIkK~~~~~l~l~L~~~p 121 (185)
T PF04127_consen 81 PSADIIIMAAAVSDFRPEEPAEGKIKKSSGDELTLELKPTP 121 (185)
T ss_dssp GGGSEEEE-SB--SEEESCHHSS-G---TT-CEEEEEEE-G
T ss_pred CcceeEEEecchhheeehhccccccccccCcceEEEEEeCh
Confidence 88999998877665522 233552 35666666554
No 328
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=94.38 E-value=0.048 Score=49.41 Aligned_cols=39 Identities=28% Similarity=0.379 Sum_probs=34.8
Q ss_pred CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
..+++||+++|.|.++.+|+.++..|+.+|++|.+..+.
T Consensus 5 ~~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~ 43 (265)
T PRK07097 5 LFSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDIN 43 (265)
T ss_pred ccCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 346899999999999999999999999999999888654
No 329
>PRK09242 tropinone reductase; Provisional
Probab=94.38 E-value=0.042 Score=49.45 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=33.8
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
..++||+++|.|+++-+|+.++..|.++|++|+++.++
T Consensus 5 ~~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~ 42 (257)
T PRK09242 5 WRLDGQTALITGASKGIGLAIAREFLGLGADVLIVARD 42 (257)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 35789999999998889999999999999999888654
No 330
>PRK06196 oxidoreductase; Provisional
Probab=94.37 E-value=0.046 Score=51.22 Aligned_cols=39 Identities=31% Similarity=0.417 Sum_probs=35.3
Q ss_pred CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
..+++||+++|.|+++-+|+.++..|+.+|++|+++.++
T Consensus 21 ~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~ 59 (315)
T PRK06196 21 GHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARR 59 (315)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 567899999999999889999999999999999988765
No 331
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.35 E-value=0.15 Score=50.02 Aligned_cols=75 Identities=24% Similarity=0.306 Sum_probs=55.6
Q ss_pred CCcCCcEEEEEcCC---------ccchHHHHHHHhhCCCeEEEEcCCC-----------CChhhhccCCcEEEEecCCCC
Q 022295 163 VTIKGKRAVVVGRS---------NIVGLPVSLLLLKADATVTIVHSHT-----------TDPESIVREADIVIAAAGQAM 222 (299)
Q Consensus 163 ~~l~gk~vvViG~s---------~~vG~pla~lL~~~gatVtv~~~~t-----------~~l~~~~~~ADIVIsa~g~p~ 222 (299)
.+++|++|.|+|-+ +.-...++..|.++|++|.+.+-.. .++.+.++.||.||.+|..+.
T Consensus 309 ~~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~ad~~v~~t~~~~ 388 (411)
T TIGR03026 309 GPLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPLIDDLEEALKGADALVILTDHDE 388 (411)
T ss_pred hcccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcccCCCHHHHHhCCCEEEEecCCHH
Confidence 46899999999932 2236788999999999999986431 356688999999999999988
Q ss_pred cCCCC--ccCC---CeEEEE
Q 022295 223 MIKGS--WIKP---GAAVID 237 (299)
Q Consensus 223 ~i~~~--~vk~---gavVID 237 (299)
|-..+ .+++ ..+|+|
T Consensus 389 ~~~~~~~~~~~~~~~~~v~D 408 (411)
T TIGR03026 389 FKDLDLEKIKDLMKGKVVVD 408 (411)
T ss_pred HhccCHHHHHHhcCCCEEEe
Confidence 74333 3322 347888
No 332
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=94.30 E-value=0.092 Score=51.27 Aligned_cols=95 Identities=17% Similarity=0.173 Sum_probs=61.3
Q ss_pred cEEEEEcCCccchHHHHHHHh-hCCC---eEEEEcCC-C--------------CChh--hhccCCcEEEEecCCC--CcC
Q 022295 168 KRAVVVGRSNIVGLPVSLLLL-KADA---TVTIVHSH-T--------------TDPE--SIVREADIVIAAAGQA--MMI 224 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~-~~ga---tVtv~~~~-t--------------~~l~--~~~~~ADIVIsa~g~p--~~i 224 (299)
++|.|||+.|.||+-+..+|. +++. ++....+. + .++. +..++.|+++.++|.- .-+
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~v~~~~~~~~~~~vDivffa~g~~~s~~~ 80 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDALKALDIIITCQGGDYTNEI 80 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcceEEcCcccccccCCCEEEEcCCHHHHHHH
Confidence 579999999999999999888 5553 33333321 0 1222 2467899999998742 223
Q ss_pred CCCccCCC--eEEEEeeccCCCCCccCCCceeeccCCchhhhh
Q 022295 225 KGSWIKPG--AAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACK 265 (299)
Q Consensus 225 ~~~~vk~g--avVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~ 265 (299)
-+...+.| ++|||-.....-+++-+ -++-.|+.+.+..
T Consensus 81 ~p~~~~aG~~~~VIDnSSa~Rmd~dVP---LVVPeVN~~~i~~ 120 (366)
T TIGR01745 81 YPKLRESGWQGYWIDAASSLRMKDDAV---IILDPVNQDVITD 120 (366)
T ss_pred HHHHHhCCCCeEEEECChhhhcCCCCC---EEeCCcCHHHHHh
Confidence 44456779 89999987755443222 3566666555443
No 333
>PRK05876 short chain dehydrogenase; Provisional
Probab=94.29 E-value=0.044 Score=50.45 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=33.0
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~ 39 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVD 39 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 689999999999999999999999999999988654
No 334
>PRK07774 short chain dehydrogenase; Provisional
Probab=94.28 E-value=0.06 Score=47.97 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=33.5
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+++||+++|.|+++-+|+.++..|+++|++|.+..+.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~ 39 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADIN 39 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4688999999998889999999999999999988765
No 335
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.27 E-value=0.054 Score=48.54 Aligned_cols=37 Identities=35% Similarity=0.519 Sum_probs=33.0
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+++||+++|.|+++.+|+.++..|+++|++|.++.+.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~ 40 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLN 40 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCC
Confidence 3679999999999999999999999999999888654
No 336
>CHL00194 ycf39 Ycf39; Provisional
Probab=94.27 E-value=0.078 Score=49.78 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=41.1
Q ss_pred EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC---------------------ChhhhccCCcEEEEecC
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT---------------------DPESIVREADIVIAAAG 219 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~---------------------~l~~~~~~ADIVIsa~g 219 (299)
+|+|.|++|.+|+.++..|+++|.+|++..|+.. .+.+.++.+|+||.+++
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 6999999999999999999999999988865421 23456778888887765
No 337
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=94.25 E-value=0.052 Score=50.63 Aligned_cols=40 Identities=38% Similarity=0.459 Sum_probs=36.1
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT 202 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~ 202 (299)
..+.||.++|-|++.-+|+++|.+|++.||+|++|.++..
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~ 43 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEE 43 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4589999999999998999999999999999999987643
No 338
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.25 E-value=0.2 Score=44.45 Aligned_cols=95 Identities=29% Similarity=0.415 Sum_probs=64.9
Q ss_pred ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------CChhhh
Q 022295 147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------------TDPESI 207 (299)
Q Consensus 147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------------~~l~~~ 207 (299)
+|+.....+..+.....-..|.+++|.|.+. +|..+++++...|++|+.+.+.. .+..+.
T Consensus 115 ~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 193 (271)
T cd05188 115 LPEPLATAYHALRRAGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEE 193 (271)
T ss_pred hcCHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHH
Confidence 4454555566666655546899999999999 89999999999999888775431 111111
Q ss_pred -----ccCCcEEEEecCCCCcC--CCCccCCCeEEEEeeccC
Q 022295 208 -----VREADIVIAAAGQAMMI--KGSWIKPGAAVIDVGTNA 242 (299)
Q Consensus 208 -----~~~ADIVIsa~g~p~~i--~~~~vk~gavVIDvg~~~ 242 (299)
-...|++|.++|.+..+ ..+.++++..++++|...
T Consensus 194 ~~~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 194 LRLTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred HHHhcCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEccCC
Confidence 24579999888863322 234567788888888654
No 339
>PRK07478 short chain dehydrogenase; Provisional
Probab=94.24 E-value=0.051 Score=48.81 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=33.1
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~ 39 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARR 39 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 3678999999999889999999999999999888654
No 340
>PRK06194 hypothetical protein; Provisional
Probab=94.22 E-value=0.055 Score=49.49 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=32.8
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
++++|+++|.|+++-+|+.++..|+++|++|+++.+.
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~ 39 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQ 39 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3578999999999889999999999999999988754
No 341
>PRK07035 short chain dehydrogenase; Provisional
Probab=94.22 E-value=0.048 Score=48.81 Aligned_cols=37 Identities=30% Similarity=0.421 Sum_probs=33.9
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
++++|+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~ 41 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRK 41 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5789999999999999999999999999999888765
No 342
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=94.21 E-value=0.048 Score=49.27 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=32.9
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~ 39 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERS 39 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 679999999999889999999999999999988764
No 343
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=94.21 E-value=0.06 Score=56.72 Aligned_cols=73 Identities=27% Similarity=0.336 Sum_probs=54.8
Q ss_pred cEEEEEcCCccchHHHHHHHhhCC--CeEEEEcCCC----------------CChhhhccCCcEEEEecCCCCc---CC-
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKAD--ATVTIVHSHT----------------TDPESIVREADIVIAAAGQAMM---IK- 225 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~g--atVtv~~~~t----------------~~l~~~~~~ADIVIsa~g~p~~---i~- 225 (299)
++|.|||.|.+ |..++..|.+.| ..|++++++. .++.+.+.++|+||.+++...+ +.
T Consensus 4 ~~I~IIG~G~m-G~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~ 82 (735)
T PRK14806 4 GRVVVIGLGLI-GGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVLAMEKVLAD 82 (735)
T ss_pred cEEEEEeeCHH-HHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHHHHHHHHHH
Confidence 68999998885 999999999888 4788887542 2355668899999999984321 21
Q ss_pred -CCccCCCeEEEEeecc
Q 022295 226 -GSWIKPGAAVIDVGTN 241 (299)
Q Consensus 226 -~~~vk~gavVIDvg~~ 241 (299)
...++++.+|+|++..
T Consensus 83 l~~~~~~~~ii~d~~sv 99 (735)
T PRK14806 83 LKPLLSEHAIVTDVGST 99 (735)
T ss_pred HHHhcCCCcEEEEcCCC
Confidence 1345788999999864
No 344
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=94.20 E-value=0.11 Score=48.72 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhC-CCc-CCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC--------------------CChhhh
Q 022295 151 PKGCLELLKRSG-VTI-KGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT--------------------TDPESI 207 (299)
Q Consensus 151 ~~av~~ll~~~~-~~l-~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t--------------------~~l~~~ 207 (299)
....+..|.+.. +.. .|.+|+|.|+++.+|..+++++...|+ .|+.+.+.. .++.+.
T Consensus 137 ~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~ 216 (345)
T cd08293 137 GLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAER 216 (345)
T ss_pred HHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHH
Confidence 334444454332 322 248999999977789999999999998 677664321 122222
Q ss_pred c-----cCCcEEEEecCCCCcC-CCCccCCCeEEEEeec
Q 022295 208 V-----READIVIAAAGQAMMI-KGSWIKPGAAVIDVGT 240 (299)
Q Consensus 208 ~-----~~ADIVIsa~g~p~~i-~~~~vk~gavVIDvg~ 240 (299)
+ +..|+++.++|.+.+- .-+.++++..++.+|.
T Consensus 217 i~~~~~~gvd~vid~~g~~~~~~~~~~l~~~G~iv~~G~ 255 (345)
T cd08293 217 LRELCPEGVDVYFDNVGGEISDTVISQMNENSHIILCGQ 255 (345)
T ss_pred HHHHCCCCceEEEECCCcHHHHHHHHHhccCCEEEEEee
Confidence 2 2478888888865431 1245788888888884
No 345
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=94.20 E-value=0.064 Score=48.44 Aligned_cols=37 Identities=27% Similarity=0.338 Sum_probs=33.4
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+++||+++|+|+++-+|+.++..|+++|+.|.++.++
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~ 40 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRS 40 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4789999999999999999999999999998887653
No 346
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.19 E-value=0.056 Score=47.90 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=32.7
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+.+|+++|.|+++.+|+.++..|+++|++|+++.++
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~ 39 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDIC 39 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 578999999999999999999999999999888665
No 347
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=94.18 E-value=0.078 Score=47.70 Aligned_cols=35 Identities=14% Similarity=0.366 Sum_probs=30.4
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHS 199 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~ 199 (299)
.|+.++|+|||.|++ |..++..|...|. ++++++.
T Consensus 25 ~L~~~~V~ViG~Ggl-Gs~ia~~La~~Gvg~i~lvD~ 60 (212)
T PRK08644 25 KLKKAKVGIAGAGGL-GSNIAVALARSGVGNLKLVDF 60 (212)
T ss_pred HHhCCCEEEECcCHH-HHHHHHHHHHcCCCeEEEEeC
Confidence 467899999999996 9999999999996 6888863
No 348
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=94.18 E-value=0.26 Score=47.74 Aligned_cols=79 Identities=24% Similarity=0.306 Sum_probs=56.5
Q ss_pred ccccCCHHHHHHHHHhhC------CCcCCcEEEEEcCCccchHHHHHHHhhCC-CeEEEEcCC-----------------
Q 022295 145 LFLPCTPKGCLELLKRSG------VTIKGKRAVVVGRSNIVGLPVSLLLLKAD-ATVTIVHSH----------------- 200 (299)
Q Consensus 145 ~~~PcT~~av~~ll~~~~------~~l~gk~vvViG~s~~vG~pla~lL~~~g-atVtv~~~~----------------- 200 (299)
..+|+++.-.++.|-+.. -.-+|+.|+|+|+|+.||..+.+++...| +.|+.+-|.
T Consensus 130 a~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~lGAd~vvdy 209 (347)
T KOG1198|consen 130 AALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKLGADEVVDY 209 (347)
T ss_pred hcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHcCCcEeecC
Confidence 346776666666666665 45689999999999999999999999999 555554332
Q ss_pred -CCChhhhccC-----CcEEEEecCCCCc
Q 022295 201 -TTDPESIVRE-----ADIVIAAAGQAMM 223 (299)
Q Consensus 201 -t~~l~~~~~~-----ADIVIsa~g~p~~ 223 (299)
+.+..+.++. -|+|+-++|.+.+
T Consensus 210 ~~~~~~e~~kk~~~~~~DvVlD~vg~~~~ 238 (347)
T KOG1198|consen 210 KDENVVELIKKYTGKGVDVVLDCVGGSTL 238 (347)
T ss_pred CCHHHHHHHHhhcCCCccEEEECCCCCcc
Confidence 2344455555 7999988887543
No 349
>PRK07576 short chain dehydrogenase; Provisional
Probab=94.16 E-value=0.059 Score=49.03 Aligned_cols=37 Identities=27% Similarity=0.427 Sum_probs=33.7
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+++||+++|.|+++-+|+.++..|+.+|++|+++.++
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~ 42 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRS 42 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4789999999999889999999999999999998764
No 350
>PRK07825 short chain dehydrogenase; Provisional
Probab=94.13 E-value=0.051 Score=49.40 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=33.3
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+++|++++|.|+|+-+|+.++..|+++|+.|.++.++
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~ 38 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLD 38 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 4678999999999999999999999999999888654
No 351
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=94.12 E-value=0.076 Score=47.93 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=33.1
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS 199 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~ 199 (299)
+++||.++|.|++.-+|+.++..|+++|++|.++.+
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~ 40 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGV 40 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecC
Confidence 578999999999999999999999999999988765
No 352
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=94.12 E-value=0.052 Score=49.49 Aligned_cols=38 Identities=32% Similarity=0.506 Sum_probs=34.1
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.+++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus 6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~ 43 (278)
T PRK08277 6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRN 43 (278)
T ss_pred eccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 35789999999998888999999999999999988764
No 353
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.12 E-value=0.11 Score=49.18 Aligned_cols=53 Identities=25% Similarity=0.377 Sum_probs=41.1
Q ss_pred EEEEEcCCccchHHHHHHHhhCC--CeEEEEcCCCC-------Ch----------------hhhccCCcEEEEecCCCC
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKAD--ATVTIVHSHTT-------DP----------------ESIVREADIVIAAAGQAM 222 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~g--atVtv~~~~t~-------~l----------------~~~~~~ADIVIsa~g~p~ 222 (299)
+|.|||.|. ||.++|..|+.+| ..|.+++++.. ++ .+.+++||+||.++|.|.
T Consensus 2 kI~IIGaG~-VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~~ 79 (308)
T cd05292 2 KVAIVGAGF-VGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGANQ 79 (308)
T ss_pred EEEEECCCH-HHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCCC
Confidence 699999865 6999999999998 47888875421 01 255889999999999753
No 354
>PRK06179 short chain dehydrogenase; Provisional
Probab=94.11 E-value=0.12 Score=46.90 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=31.5
Q ss_pred CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
++++++|.|+++-+|+.++..|+++|++|+++.++
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46889999999999999999999999999988764
No 355
>PLN02427 UDP-apiose/xylose synthase
Probab=94.11 E-value=0.12 Score=49.81 Aligned_cols=58 Identities=21% Similarity=0.307 Sum_probs=44.6
Q ss_pred CCCcCCcEEEEEcCCccchHHHHHHHhhC-CCeEEEEcCCCC----------------------------ChhhhccCCc
Q 022295 162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKA-DATVTIVHSHTT----------------------------DPESIVREAD 212 (299)
Q Consensus 162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~-gatVtv~~~~t~----------------------------~l~~~~~~AD 212 (299)
|-+++.++|+|.|++|.+|+.++..|+++ |..|..+.+... .+.+.++.+|
T Consensus 9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d 88 (386)
T PLN02427 9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD 88 (386)
T ss_pred CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence 55677789999999999999999999998 588887764311 1335567899
Q ss_pred EEEEecC
Q 022295 213 IVIAAAG 219 (299)
Q Consensus 213 IVIsa~g 219 (299)
+||..++
T Consensus 89 ~ViHlAa 95 (386)
T PLN02427 89 LTINLAA 95 (386)
T ss_pred EEEEccc
Confidence 9997665
No 356
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=94.10 E-value=0.091 Score=49.97 Aligned_cols=59 Identities=24% Similarity=0.228 Sum_probs=45.2
Q ss_pred CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC--------------------C------hhhhccCCcEEE
Q 022295 162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT--------------------D------PESIVREADIVI 215 (299)
Q Consensus 162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~--------------------~------l~~~~~~ADIVI 215 (299)
+.+-.+++|+|.|+++.+|+.++..|+++|++|+++.+... | +.+.++..|.||
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 84 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVF 84 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence 44567899999999999999999999999999987654311 1 224456789999
Q ss_pred EecCC
Q 022295 216 AAAGQ 220 (299)
Q Consensus 216 sa~g~ 220 (299)
..++.
T Consensus 85 h~A~~ 89 (353)
T PLN02896 85 HVAAS 89 (353)
T ss_pred ECCcc
Confidence 77764
No 357
>PRK09291 short chain dehydrogenase; Provisional
Probab=94.09 E-value=0.083 Score=47.25 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=30.5
Q ss_pred CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+|+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~ 35 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQI 35 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5789999999999999999999999999887653
No 358
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.09 E-value=0.14 Score=50.71 Aligned_cols=124 Identities=19% Similarity=0.262 Sum_probs=67.1
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC-hhhhccC--CcEEEEecCCCCcCCCCcc-CCCeEEEEeec
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD-PESIVRE--ADIVIAAAGQAMMIKGSWI-KPGAAVIDVGT 240 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~-l~~~~~~--ADIVIsa~g~p~~i~~~~v-k~gavVIDvg~ 240 (299)
+.+|+++|+|.|+. |+.+|.+|+++|+.|++.+..... ..+.++. .-+-+. .|. .+...+ ....+|+--|+
T Consensus 3 ~~~~~~~v~G~g~~-G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~-~g~---~~~~~~~~~d~vv~spgi 77 (445)
T PRK04308 3 FQNKKILVAGLGGT-GISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFY-TGR---LKDALDNGFDILALSPGI 77 (445)
T ss_pred CCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEE-eCC---CCHHHHhCCCEEEECCCC
Confidence 57899999999986 999999999999999998754321 1111211 011110 011 000001 12345555555
Q ss_pred cCCCCC---ccCCCceeeccCCchh-hhhh-hceeccCCCCccHHHHHHHHHHHHHHH
Q 022295 241 NAVDDS---TKKSGYRLVGDVDFHE-ACKV-AGCVTPVPGGVGPMTVAMLLRNTLDGA 293 (299)
Q Consensus 241 ~~~~~~---~~~~g~kl~GDvdf~~-~~~~-a~~iTPVPGGVGp~T~a~L~~n~v~a~ 293 (299)
++.... -...|..+.++.++-. ..+. ...+--|-|--|.=|+..|+.++++..
T Consensus 78 ~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~ 135 (445)
T PRK04308 78 SERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKC 135 (445)
T ss_pred CCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence 432100 0001224667766532 2110 011122558889999999999988754
No 359
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.07 E-value=0.06 Score=48.03 Aligned_cols=36 Identities=39% Similarity=0.563 Sum_probs=32.7
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
++||+++|.|.++.+|+.++..|+++|++|.++.++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~ 37 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLN 37 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 578999999999999999999999999999888765
No 360
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.05 E-value=0.12 Score=46.58 Aligned_cols=55 Identities=22% Similarity=0.286 Sum_probs=41.0
Q ss_pred CCcEEEEEcCCccchHHHHHHHhhCC---Ce-EEEEcCC----------------CCChhhhccCCcEEEEecCCC
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLLKAD---AT-VTIVHSH----------------TTDPESIVREADIVIAAAGQA 221 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~~~g---at-Vtv~~~~----------------t~~l~~~~~~ADIVIsa~g~p 221 (299)
+..++.|||.|.+ |..++..|.+.+ .+ +++++++ +.+..+.+.++|+||.+++..
T Consensus 3 ~~~kI~iIG~G~m-g~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~ 77 (245)
T PRK07634 3 KKHRILFIGAGRM-AEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS 77 (245)
T ss_pred CCCeEEEECcCHH-HHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH
Confidence 4578999998885 999999988775 23 6666542 134556788999999998853
No 361
>PRK07856 short chain dehydrogenase; Provisional
Probab=94.03 E-value=0.092 Score=47.14 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=33.4
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~ 39 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRR 39 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 5789999999999999999999999999999887654
No 362
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=94.03 E-value=0.12 Score=45.98 Aligned_cols=54 Identities=24% Similarity=0.265 Sum_probs=43.6
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-------------------ChhhhccCCcEEEEecCCC
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-------------------DPESIVREADIVIAAAGQA 221 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-------------------~l~~~~~~ADIVIsa~g~p 221 (299)
.++.|||+|+-+|.-++.-+.++|.+||-.-|+.. .+.+.+..-|+||+|.|.+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 37899999999999999999999999998865521 1235677889999998854
No 363
>PRK08589 short chain dehydrogenase; Validated
Probab=94.02 E-value=0.063 Score=49.08 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=33.3
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 3689999999998889999999999999999988764
No 364
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=94.02 E-value=0.07 Score=47.44 Aligned_cols=35 Identities=17% Similarity=0.413 Sum_probs=30.7
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHS 199 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~ 199 (299)
.|+.++|+|+|.|+ +|-.++..|...|. ++++++.
T Consensus 18 ~L~~s~VlIiG~gg-lG~evak~La~~GVg~i~lvD~ 53 (197)
T cd01492 18 RLRSARILLIGLKG-LGAEIAKNLVLSGIGSLTILDD 53 (197)
T ss_pred HHHhCcEEEEcCCH-HHHHHHHHHHHcCCCEEEEEEC
Confidence 36789999999999 59999999999996 7999963
No 365
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=94.01 E-value=0.14 Score=47.58 Aligned_cols=34 Identities=29% Similarity=0.290 Sum_probs=30.2
Q ss_pred CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS 199 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~ 199 (299)
+||+++|.|+++.+|+.++..|+++|.+|+++.+
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r 36 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVR 36 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEc
Confidence 4789999999999999999999999999887654
No 366
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=94.01 E-value=0.061 Score=48.38 Aligned_cols=36 Identities=28% Similarity=0.380 Sum_probs=32.8
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+.+|+++|.|.++.+|+.++..|+++|++|.++.++
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~ 39 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIK 39 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCC
Confidence 678999999999999999999999999999888754
No 367
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=93.98 E-value=0.087 Score=52.36 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=54.2
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC-----------------------------ChhhhccCCcEEEEec
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-----------------------------DPESIVREADIVIAAA 218 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~-----------------------------~l~~~~~~ADIVIsa~ 218 (299)
-+|.|||-|- ||.|+|..|+. +.+|+.++.+.. ...+.+++||++|+++
T Consensus 7 mkI~vIGlGy-vGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~V 84 (425)
T PRK15182 7 VKIAIIGLGY-VGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITV 84 (425)
T ss_pred CeEEEECcCc-chHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEc
Confidence 5799999877 59999999876 689999875421 1124578999999999
Q ss_pred CCCC---------cCC------CCccCCCeEEEEeeccCC
Q 022295 219 GQAM---------MIK------GSWIKPGAAVIDVGTNAV 243 (299)
Q Consensus 219 g~p~---------~i~------~~~vk~gavVIDvg~~~~ 243 (299)
+.|. .+- ...+++|++|||-.+-+.
T Consensus 85 ptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~p 124 (425)
T PRK15182 85 PTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYP 124 (425)
T ss_pred CCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence 9872 111 134588999999876543
No 368
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.96 E-value=0.097 Score=48.76 Aligned_cols=69 Identities=13% Similarity=0.268 Sum_probs=46.9
Q ss_pred EEEEEcCCccchHHHHHHHhhCC----CeEEEEcCCC-----------------CChhhhccCCcEEEEecCCCCc---C
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKAD----ATVTIVHSHT-----------------TDPESIVREADIVIAAAGQAMM---I 224 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~g----atVtv~~~~t-----------------~~l~~~~~~ADIVIsa~g~p~~---i 224 (299)
++.|||.|.+ |..++..|.+.| .+|+++.++. .+..+.++++|+||.++....+ +
T Consensus 3 ~I~iIG~G~m-G~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~~~~~vl 81 (277)
T PRK06928 3 KIGFIGYGSM-ADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPLAVLPLL 81 (277)
T ss_pred EEEEECccHH-HHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHHHHHHHH
Confidence 6899998875 999999998887 5677776431 2344567889999999874322 1
Q ss_pred C--CCccCCCeEEEEe
Q 022295 225 K--GSWIKPGAAVIDV 238 (299)
Q Consensus 225 ~--~~~vk~gavVIDv 238 (299)
. ...++++.+||.+
T Consensus 82 ~~l~~~l~~~~~ivS~ 97 (277)
T PRK06928 82 KDCAPVLTPDRHVVSI 97 (277)
T ss_pred HHHHhhcCCCCEEEEE
Confidence 1 1235566666654
No 369
>PRK06500 short chain dehydrogenase; Provisional
Probab=93.96 E-value=0.063 Score=47.72 Aligned_cols=36 Identities=28% Similarity=0.463 Sum_probs=32.3
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
++||+++|.|+++.+|+.++..|+++|++|.+..++
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~ 39 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRD 39 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence 578999999999999999999999999998877654
No 370
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.96 E-value=0.1 Score=49.62 Aligned_cols=77 Identities=27% Similarity=0.365 Sum_probs=54.6
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC---C------------------CChh--hhccCCcEEEEecCCC
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH---T------------------TDPE--SIVREADIVIAAAGQA 221 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~---t------------------~~l~--~~~~~ADIVIsa~g~p 221 (299)
..|++|+|+|.|. +|..+++++...|+.|+++.++ . .++. .....+|+||.++|.+
T Consensus 171 ~~g~~vlI~G~G~-vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~ 249 (355)
T cd08230 171 WNPRRALVLGAGP-IGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVP 249 (355)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCH
Confidence 4799999999755 6999999999999988887652 1 1111 1123479999999987
Q ss_pred CcCC--CCccCCCeEEEEeeccC
Q 022295 222 MMIK--GSWIKPGAAVIDVGTNA 242 (299)
Q Consensus 222 ~~i~--~~~vk~gavVIDvg~~~ 242 (299)
..+. -+.++++..++-+|...
T Consensus 250 ~~~~~~~~~l~~~G~~v~~G~~~ 272 (355)
T cd08230 250 PLAFEALPALAPNGVVILFGVPG 272 (355)
T ss_pred HHHHHHHHHccCCcEEEEEecCC
Confidence 5432 25578887888888643
No 371
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.95 E-value=0.057 Score=44.57 Aligned_cols=32 Identities=25% Similarity=0.514 Sum_probs=27.6
Q ss_pred CcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcC
Q 022295 167 GKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHS 199 (299)
Q Consensus 167 gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~ 199 (299)
.++|+|+|.|++ |..++..|+..|. .+++++.
T Consensus 2 ~~~v~iiG~G~v-Gs~va~~L~~~Gv~~i~lvD~ 34 (135)
T PF00899_consen 2 NKRVLIIGAGGV-GSEVAKNLARSGVGKITLVDD 34 (135)
T ss_dssp T-EEEEESTSHH-HHHHHHHHHHHTTSEEEEEES
T ss_pred CCEEEEECcCHH-HHHHHHHHHHhCCCceeecCC
Confidence 579999999885 9999999999997 7999963
No 372
>PRK07814 short chain dehydrogenase; Provisional
Probab=93.95 E-value=0.059 Score=48.86 Aligned_cols=37 Identities=27% Similarity=0.365 Sum_probs=33.5
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+++||+++|.|.++-+|+.++..|+.+|++|.++.++
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~ 43 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAART 43 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4789999999999999999999999999999888764
No 373
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=93.95 E-value=0.11 Score=47.49 Aligned_cols=52 Identities=23% Similarity=0.317 Sum_probs=42.0
Q ss_pred EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC------hhhhccCC--cEEEEecCC
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD------PESIVREA--DIVIAAAGQ 220 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~------l~~~~~~A--DIVIsa~g~ 220 (299)
+++|+|+++.+|+.++..|+++|..|+++.+...| +.+.+..+ |+||..+|.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~d~~~~~~~~~~~~~~~~d~vi~~a~~ 60 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQLDLTDPEALERLLRAIRPDAVVNTAAY 60 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCcccCCCCHHHHHHHHHhCCCCEEEECCcc
Confidence 48999999999999999999999999988775433 34556655 999987774
No 374
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=93.92 E-value=0.15 Score=48.52 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=33.5
Q ss_pred CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295 162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS 199 (299)
Q Consensus 162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~ 199 (299)
..-+++|+|+|.|++|.+|..++..|+++|.+|+.+.+
T Consensus 10 ~~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 10 KLVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDN 47 (348)
T ss_pred cccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 34578899999999999999999999999999887754
No 375
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=93.90 E-value=0.21 Score=46.91 Aligned_cols=94 Identities=26% Similarity=0.339 Sum_probs=63.5
Q ss_pred cccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCe-EEEEcCCC-------------------CC--
Q 022295 146 FLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADAT-VTIVHSHT-------------------TD-- 203 (299)
Q Consensus 146 ~~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gat-Vtv~~~~t-------------------~~-- 203 (299)
.++|.....+..++..++ ..|.+|+|.|.| .+|..+++++...|+. |+++.+.. .+
T Consensus 144 ~l~~~~~ta~~~l~~~~~-~~g~~vlV~G~G-~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~ 221 (339)
T cd08239 144 LLLCGIGTAYHALRRVGV-SGRDTVLVVGAG-PVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQ 221 (339)
T ss_pred hhcchHHHHHHHHHhcCC-CCCCEEEEECCC-HHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHH
Confidence 345555555666665554 359999999975 5799999999999998 87765421 11
Q ss_pred -hhhhcc--CCcEEEEecCCCCcCC--CCccCCCeEEEEeecc
Q 022295 204 -PESIVR--EADIVIAAAGQAMMIK--GSWIKPGAAVIDVGTN 241 (299)
Q Consensus 204 -l~~~~~--~ADIVIsa~g~p~~i~--~~~vk~gavVIDvg~~ 241 (299)
+.+.+. .+|+||.++|.+..+. -+.++++..++-+|..
T Consensus 222 ~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 264 (339)
T cd08239 222 EIRELTSGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEG 264 (339)
T ss_pred HHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCC
Confidence 112222 4799999998765432 3567888788888864
No 376
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.89 E-value=0.14 Score=47.89 Aligned_cols=76 Identities=16% Similarity=0.253 Sum_probs=53.6
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCe-EEEEcCCCCChh-----------h-hccCCcEEEEecCCCCcCC--CCcc
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADAT-VTIVHSHTTDPE-----------S-IVREADIVIAAAGQAMMIK--GSWI 229 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gat-Vtv~~~~t~~l~-----------~-~~~~ADIVIsa~g~p~~i~--~~~v 229 (299)
..|++++|+|.|. ||..+++++...|++ |.++..+...+. + .-..+|+||-++|.+..+. -+.+
T Consensus 143 ~~~~~vlV~G~G~-vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvid~~G~~~~~~~~~~~l 221 (308)
T TIGR01202 143 VKVLPDLIVGHGT-LGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIYDASGDPSLIDTLVRRL 221 (308)
T ss_pred cCCCcEEEECCCH-HHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEEECCCCHHHHHHHHHhh
Confidence 4688999999876 699999988889997 445543211111 1 1135799999999876543 3678
Q ss_pred CCCeEEEEeecc
Q 022295 230 KPGAAVIDVGTN 241 (299)
Q Consensus 230 k~gavVIDvg~~ 241 (299)
+++..++-+|..
T Consensus 222 ~~~G~iv~~G~~ 233 (308)
T TIGR01202 222 AKGGEIVLAGFY 233 (308)
T ss_pred hcCcEEEEEeec
Confidence 888888888864
No 377
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=93.89 E-value=0.094 Score=46.12 Aligned_cols=38 Identities=34% Similarity=0.488 Sum_probs=33.5
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT 201 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t 201 (299)
++.+|+++|.|+++-+|+.++..|+++|++|+++.++.
T Consensus 2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~ 39 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNE 39 (246)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 35678999999999999999999999999998887653
No 378
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=93.88 E-value=0.13 Score=49.10 Aligned_cols=95 Identities=25% Similarity=0.292 Sum_probs=61.9
Q ss_pred cccCCHHHHHHHHHhh-CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------CChh
Q 022295 146 FLPCTPKGCLELLKRS-GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------------TDPE 205 (299)
Q Consensus 146 ~~PcT~~av~~ll~~~-~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------------~~l~ 205 (299)
-+|+++.-.+.+|.++ +... |.+|+|.|+++.||..+.+++...|+++.+.-+++ .++.
T Consensus 122 al~~~~~TA~~~l~~~~~l~~-g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~ 200 (326)
T COG0604 122 ALPLAGLTAWLALFDRAGLKP-GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFV 200 (326)
T ss_pred HHHHHHHHHHHHHHHhcCCCC-CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHH
Confidence 3566666667777663 3333 99999999999999999999999996533332221 1233
Q ss_pred hhcc------CCcEEEEecCCCCcC-CCCccCCCeEEEEeecc
Q 022295 206 SIVR------EADIVIAAAGQAMMI-KGSWIKPGAAVIDVGTN 241 (299)
Q Consensus 206 ~~~~------~ADIVIsa~g~p~~i-~~~~vk~gavVIDvg~~ 241 (299)
+.++ ..|+|+-.+|.+.+- .-..++++..++.+|..
T Consensus 201 ~~v~~~t~g~gvDvv~D~vG~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 201 EQVRELTGGKGVDVVLDTVGGDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred HHHHHHcCCCCceEEEECCCHHHHHHHHHHhccCCEEEEEecC
Confidence 3322 478888888866542 33456666667777754
No 379
>PRK06114 short chain dehydrogenase; Provisional
Probab=93.86 E-value=0.1 Score=46.98 Aligned_cols=37 Identities=24% Similarity=0.388 Sum_probs=33.9
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+++||.++|.|.++-+|+.++..|+++|++|.++.++
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~ 41 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLR 41 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 5789999999999999999999999999999988764
No 380
>PRK06444 prephenate dehydrogenase; Provisional
Probab=93.86 E-value=0.12 Score=46.29 Aligned_cols=59 Identities=12% Similarity=0.253 Sum_probs=43.2
Q ss_pred EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccCC-CeEEEEeecc
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKP-GAAVIDVGTN 241 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk~-gavVIDvg~~ 241 (299)
+++|||.+|-+|+-++..|.+.|..|+ +++||+||.|++.... .+++++ ..+++|+|.-
T Consensus 2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~------------~~~~DlVilavPv~~~--~~~i~~~~~~v~Dv~Sv 61 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNGLGVY------------IKKADHAFLSVPIDAA--LNYIESYDNNFVEISSV 61 (197)
T ss_pred EEEEEecCCcHHHHHHHHHHhCCCEEE------------ECCCCEEEEeCCHHHH--HHHHHHhCCeEEecccc
Confidence 689999856679999999999998886 4789999999874321 111211 1368899863
No 381
>PLN00106 malate dehydrogenase
Probab=93.86 E-value=0.2 Score=48.05 Aligned_cols=57 Identities=25% Similarity=0.370 Sum_probs=42.4
Q ss_pred CCcEEEEEcCCccchHHHHHHHhhCCC--eEEEEcC-----------------------CCCChhhhccCCcEEEEecCC
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHS-----------------------HTTDPESIVREADIVIAAAGQ 220 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~-----------------------~t~~l~~~~~~ADIVIsa~g~ 220 (299)
..++|+|+|+.|.||..++..|+.++. ++.+++. .+.++.+.+++||+||.+.|.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 346999999945579999999986552 5555542 233457889999999999996
Q ss_pred CC
Q 022295 221 AM 222 (299)
Q Consensus 221 p~ 222 (299)
|.
T Consensus 97 ~~ 98 (323)
T PLN00106 97 PR 98 (323)
T ss_pred CC
Confidence 54
No 382
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=93.85 E-value=0.11 Score=50.31 Aligned_cols=69 Identities=23% Similarity=0.343 Sum_probs=51.2
Q ss_pred EEEEEcCCccchHHHHHHHhhCC--------CeEEEEcC-----C----------------------------CCChhhh
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKAD--------ATVTIVHS-----H----------------------------TTDPESI 207 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~g--------atVtv~~~-----~----------------------------t~~l~~~ 207 (299)
+|+|||+|.. |.++|..|...| .+|++..+ . |.++.+.
T Consensus 1 kI~VIGaG~w-GtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea 79 (342)
T TIGR03376 1 RVAVVGSGNW-GTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342)
T ss_pred CEEEECcCHH-HHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence 4899998775 999999999888 78888754 1 2467788
Q ss_pred ccCCcEEEEecCCCCc---CC--CCccCCCeEEEEe
Q 022295 208 VREADIVIAAAGQAMM---IK--GSWIKPGAAVIDV 238 (299)
Q Consensus 208 ~~~ADIVIsa~g~p~~---i~--~~~vk~gavVIDv 238 (299)
+++||+||.|++...+ +. ..++++++.+|-+
T Consensus 80 l~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~ 115 (342)
T TIGR03376 80 AKGADILVFVIPHQFLEGICKQLKGHVKPNARAISC 115 (342)
T ss_pred HhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEE
Confidence 9999999999986432 11 2356777777665
No 383
>PLN00198 anthocyanidin reductase; Provisional
Probab=93.84 E-value=0.17 Score=47.69 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=31.3
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEc
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVH 198 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~ 198 (299)
+..+++|+|.|+++.+|+.++..|+++|++|.++.
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~ 40 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTV 40 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEE
Confidence 56789999999999999999999999999987653
No 384
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.82 E-value=0.081 Score=51.54 Aligned_cols=35 Identities=29% Similarity=0.510 Sum_probs=30.8
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHS 199 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~ 199 (299)
.+++++|+|+|.|++ |..++..|+..|. ++++++.
T Consensus 132 ~l~~~~VlvvG~GG~-Gs~ia~~La~~Gvg~i~lvD~ 167 (376)
T PRK08762 132 RLLEARVLLIGAGGL-GSPAALYLAAAGVGTLGIVDH 167 (376)
T ss_pred HHhcCcEEEECCCHH-HHHHHHHHHHcCCCeEEEEeC
Confidence 468899999999995 9999999999997 7888864
No 385
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.79 E-value=0.074 Score=49.39 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=27.6
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHS 199 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~ 199 (299)
++|.|||.|.+ |.+++..|+..|..|++++.
T Consensus 4 ~kI~VIG~G~m-G~~ia~~la~~g~~V~~~d~ 34 (282)
T PRK05808 4 QKIGVIGAGTM-GNGIAQVCAVAGYDVVMVDI 34 (282)
T ss_pred cEEEEEccCHH-HHHHHHHHHHCCCceEEEeC
Confidence 57999998775 99999999999999999973
No 386
>PRK06139 short chain dehydrogenase; Provisional
Probab=93.79 E-value=0.054 Score=51.70 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=33.7
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
++++|.++|.|+|+-+|+.++..|+++|++|.++.++
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~ 40 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGARLVLAARD 40 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 4688999999999889999999999999999998765
No 387
>PRK12742 oxidoreductase; Provisional
Probab=93.78 E-value=0.098 Score=46.16 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=31.5
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS 199 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~ 199 (299)
.++||+++|.|+++-+|+.++..|+++|++|.+..+
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~ 38 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYA 38 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecC
Confidence 367999999999888999999999999999877643
No 388
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.77 E-value=0.068 Score=47.44 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=33.4
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT 201 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t 201 (299)
++++.++|.|+++.+|+.++..|+++|++|.+++++.
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~ 41 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTE 41 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5789999999999999999999999999999988753
No 389
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.74 E-value=0.086 Score=46.59 Aligned_cols=38 Identities=34% Similarity=0.451 Sum_probs=33.2
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEE-cCCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIV-HSHT 201 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~-~~~t 201 (299)
++.+|+++|+|+++-+|+.++..|+++|++|.+. .++.
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~ 40 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINE 40 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 4678999999999889999999999999999888 6543
No 390
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.73 E-value=0.082 Score=46.69 Aligned_cols=37 Identities=32% Similarity=0.515 Sum_probs=33.3
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+++||+++|.|.++.+|..++..|.++|++|++..++
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~ 38 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRN 38 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3679999999999999999999999999999888664
No 391
>PRK12939 short chain dehydrogenase; Provisional
Probab=93.72 E-value=0.074 Score=47.20 Aligned_cols=37 Identities=32% Similarity=0.413 Sum_probs=32.6
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.+++|+++|.|+++.+|+.++..|.++|++|.++.++
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~ 40 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGL 40 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCC
Confidence 3678999999998889999999999999998887654
No 392
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=93.71 E-value=0.15 Score=49.82 Aligned_cols=111 Identities=16% Similarity=0.165 Sum_probs=65.1
Q ss_pred cEEEEEcCCccchHHHHH-HHhhCCCe---EEEEcCC-C--------------CCh--hhhccCCcEEEEecCCC--CcC
Q 022295 168 KRAVVVGRSNIVGLPVSL-LLLKADAT---VTIVHSH-T--------------TDP--ESIVREADIVIAAAGQA--MMI 224 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~-lL~~~gat---Vtv~~~~-t--------------~~l--~~~~~~ADIVIsa~g~p--~~i 224 (299)
.+|.|||++|.||+-+.. +|.+.+.. +....+. + .++ .+..+++|++|.|+|.- .-+
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~~~~~~~Divf~a~~~~~s~~~ 81 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDIDALKKLDIIITCQGGDYTNEV 81 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCChhHhcCCCEEEECCCHHHHHHH
Confidence 378999999999999997 66666654 5554331 0 011 13457899999998742 113
Q ss_pred CCCccCCC--eEEEEeeccCCCCCccCCCceeeccCCchhhhhh--hc--eeccCCCCccHHHHHHH
Q 022295 225 KGSWIKPG--AAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKV--AG--CVTPVPGGVGPMTVAML 285 (299)
Q Consensus 225 ~~~~vk~g--avVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~--a~--~iTPVPGGVGp~T~a~L 285 (299)
-+...+.| ++|||.+..+.-+++-+ -.+-.|+-+.+... .+ .+. .|| -.|++|+
T Consensus 82 ~~~~~~aG~~~~VID~Ss~fR~~~dvp---lvvPEvN~e~i~~~~~~g~~iIa-nPn---C~tt~~~ 141 (369)
T PRK06598 82 YPKLRAAGWQGYWIDAASTLRMKDDAI---IILDPVNRDVIDDALANGVKTFV-GGN---CTVSLML 141 (369)
T ss_pred HHHHHhCCCCeEEEECChHHhCCCCCc---EEcCCcCHHHHHhhhhcCCCEEE-cCC---hHHHHHH
Confidence 33445668 78999997754332211 23444554444432 12 122 453 5666666
No 393
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=93.71 E-value=0.12 Score=50.47 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=34.9
Q ss_pred hCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 161 SGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 161 ~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.+...+|++++|+|+++.+|+.++..|+++|..|+.+.+.
T Consensus 54 ~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~ 93 (390)
T PLN02657 54 RSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVARE 93 (390)
T ss_pred cccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEec
Confidence 3556788999999999999999999999999998888654
No 394
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=93.66 E-value=0.18 Score=48.33 Aligned_cols=94 Identities=19% Similarity=0.222 Sum_probs=58.9
Q ss_pred ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCC-------------------CCChhh
Q 022295 147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH-------------------TTDPES 206 (299)
Q Consensus 147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~-------------------t~~l~~ 206 (299)
++|.....+..+.+..---.|.+|+|.|.| .+|..+++++...|+ .|+++.+. ..++.+
T Consensus 172 ~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G-~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~ 250 (371)
T cd08281 172 FGCAVLTGVGAVVNTAGVRPGQSVAVVGLG-GVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVE 250 (371)
T ss_pred hcchHHHHHHHHHhccCCCCCCEEEEECCC-HHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHH
Confidence 444433334433222222368999999975 579999999999998 57766432 112222
Q ss_pred h----cc-CCcEEEEecCCCCcCC--CCccCCCeEEEEeecc
Q 022295 207 I----VR-EADIVIAAAGQAMMIK--GSWIKPGAAVIDVGTN 241 (299)
Q Consensus 207 ~----~~-~ADIVIsa~g~p~~i~--~~~vk~gavVIDvg~~ 241 (299)
. +. .+|+||-++|.+..+. -+.++++..++-+|..
T Consensus 251 ~i~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~ 292 (371)
T cd08281 251 QVRELTGGGVDYAFEMAGSVPALETAYEITRRGGTTVTAGLP 292 (371)
T ss_pred HHHHHhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEccC
Confidence 1 11 4799999998765433 2457887778888864
No 395
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=93.63 E-value=0.22 Score=45.84 Aligned_cols=95 Identities=16% Similarity=0.142 Sum_probs=65.0
Q ss_pred ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-----------------C--Ch---
Q 022295 147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-----------------T--DP--- 204 (299)
Q Consensus 147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-----------------~--~l--- 204 (299)
+|+.+...+..+...+....|.+++|.|.++.+|..++.++..+|+.|++..+.. . +.
T Consensus 119 ~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 198 (323)
T cd05282 119 LYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELKALGADEVIDSSPEDLAQR 198 (323)
T ss_pred HhccHHHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHHhcCCCEEecccchhHHHH
Confidence 3444555555565555556789999999988899999999999999877654321 1 11
Q ss_pred -hhhc--cCCcEEEEecCCCCcC-CCCccCCCeEEEEeecc
Q 022295 205 -ESIV--READIVIAAAGQAMMI-KGSWIKPGAAVIDVGTN 241 (299)
Q Consensus 205 -~~~~--~~ADIVIsa~g~p~~i-~~~~vk~gavVIDvg~~ 241 (299)
.+.+ +..|+++.++|.+... -.++++++..++++|..
T Consensus 199 ~~~~~~~~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~ 239 (323)
T cd05282 199 VKEATGGAGARLALDAVGGESATRLARSLRPGGTLVNYGLL 239 (323)
T ss_pred HHHHhcCCCceEEEECCCCHHHHHHHHhhCCCCEEEEEccC
Confidence 1122 3579999888865432 23567888889998864
No 396
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=93.63 E-value=0.32 Score=44.15 Aligned_cols=95 Identities=20% Similarity=0.212 Sum_probs=62.9
Q ss_pred ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC-------------------CCh---
Q 022295 147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------------------TDP--- 204 (299)
Q Consensus 147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t-------------------~~l--- 204 (299)
++|....++..+.+...-..|++++|.|.++.+|..++.++...|++|++..+.. .+.
T Consensus 125 ~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 204 (325)
T cd08253 125 LGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVRQAGADAVFNYRAEDLADR 204 (325)
T ss_pred hhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHH
Confidence 3444455555555544445789999999877789999999999999887764421 111
Q ss_pred -hhhc--cCCcEEEEecCCCCc-CCCCccCCCeEEEEeecc
Q 022295 205 -ESIV--READIVIAAAGQAMM-IKGSWIKPGAAVIDVGTN 241 (299)
Q Consensus 205 -~~~~--~~ADIVIsa~g~p~~-i~~~~vk~gavVIDvg~~ 241 (299)
.+.+ +..|+++.++|...+ ...++++++..++++|.+
T Consensus 205 ~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~~~~ 245 (325)
T cd08253 205 ILAATAGQGVDVIIEVLANVNLAKDLDVLAPGGRIVVYGSG 245 (325)
T ss_pred HHHHcCCCceEEEEECCchHHHHHHHHhhCCCCEEEEEeec
Confidence 1222 247888888776543 223567777788888864
No 397
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.62 E-value=0.3 Score=48.15 Aligned_cols=157 Identities=18% Similarity=0.254 Sum_probs=97.5
Q ss_pred HHHHHHHHHcCCceeeecCCCCCCHHHHHHHHHHhcCCCCceEEEEeCCCCC---C---CCHHHHHccCCccccCCCCCc
Q 022295 58 SMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPK---H---INEEKVLGEISLEKDVDGFHP 131 (299)
Q Consensus 58 ~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~GIlvq~Plp~---~---i~~~~i~~~i~p~KDVDg~~~ 131 (299)
+--...|+++||+ +.+.|+..|.-|. +++++|=|. | +|+-.+ -.-+++..... ..
T Consensus 230 NElali~~~~GId--------------vwevIeaAnt~P~---~~~~~PGpGvGGHCIpvDP~fl-~~ka~~yg~~~-rl 290 (436)
T COG0677 230 NELALICNAMGID--------------VWEVIEAANTKPR---VNIFYPGPGVGGHCIPVDPYFL-TWKAPEYGLPA-RL 290 (436)
T ss_pred HHHHHHHHHhCCc--------------HHHHHHHhccCCc---eeecCCCCCCCCcccccCchhe-eecccccCCch-HH
Confidence 3345556666664 5577888898876 788888763 2 333222 11222222110 11
Q ss_pred ccccccccCCCCCccccC-CHHHHHHHHHhhCCCcCCcEEEEEcCC---------ccchHHHHHHHhhCCCeEEEEcCC-
Q 022295 132 LNIGKLAMKGRDPLFLPC-TPKGCLELLKRSGVTIKGKRAVVVGRS---------NIVGLPVSLLLLKADATVTIVHSH- 200 (299)
Q Consensus 132 ~n~g~l~~g~~~~~~~Pc-T~~av~~ll~~~~~~l~gk~vvViG~s---------~~vG~pla~lL~~~gatVtv~~~~- 200 (299)
.-+.+-.+ ++ .|- ...-+.+.|.+.+..++|.+|+|+|-. +.=...+..+|.+.|+.|.+++-+
T Consensus 291 I~tAreIN----~~-mP~~Vv~~~~~al~~~~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l~~~g~~v~~~DP~v 365 (436)
T COG0677 291 IRTAREIN----DS-MPRHVVDRVKEALNKAGKPLSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGEVLVYDPYV 365 (436)
T ss_pred HHHHHHHh----cc-CCHHHHHHHHHHHHHcCCCCcCceEEEEEeeecCCCcccccCchHHHHHHHHHhCCeEEEECCCC
Confidence 11222221 11 121 123344555589999999999999921 112567888999999999988643
Q ss_pred ------------C-CChhhhccCCcEEEEecCCCCc--CCCCccC-CCeEEEEe
Q 022295 201 ------------T-TDPESIVREADIVIAAAGQAMM--IKGSWIK-PGAAVIDV 238 (299)
Q Consensus 201 ------------t-~~l~~~~~~ADIVIsa~g~p~~--i~~~~vk-~gavVIDv 238 (299)
| ..+++.++.+|+||-+|-...| ++.+.+. ...+|+|.
T Consensus 366 ~~~~~~~~~~~~~~~~~e~al~~~D~vVi~tDH~~fk~id~~~i~~~~~vivDt 419 (436)
T COG0677 366 KELPTREDGEGVTLAILEEALKDADAVVIATDHSEFKEIDYEAIGKEAKVIVDT 419 (436)
T ss_pred CcchhhhhccccchhhHHHHhccCCEEEEEeccHHhhcCCHHHhccCCcEEEEC
Confidence 2 4567889999999999988777 7777774 46788884
No 398
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=93.61 E-value=0.1 Score=45.06 Aligned_cols=37 Identities=41% Similarity=0.566 Sum_probs=31.1
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT 201 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t 201 (299)
+++||+|+|||.|.. +--++..|++.|.+|+++.|+.
T Consensus 164 ~~~~k~V~VVG~G~S-A~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 164 DFKGKRVVVVGGGNS-AVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp GCTTSEEEEE--SHH-HHHHHHHHTTTCSEEEEEESS-
T ss_pred hcCCCcEEEEcChHH-HHHHHHHHHhhCCEEEEEecCC
Confidence 578999999998887 9999999999999999998763
No 399
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=93.59 E-value=0.19 Score=47.75 Aligned_cols=54 Identities=33% Similarity=0.469 Sum_probs=41.5
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCC----------------------------CChhhhccCCcEEEEe
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHT----------------------------TDPESIVREADIVIAA 217 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t----------------------------~~l~~~~~~ADIVIsa 217 (299)
.+|.|+|+++.||..++..|+..|. +|+++.++. .+ .+.+++||+||.+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEe
Confidence 3799999866689999999998874 477776421 12 2558999999999
Q ss_pred cCCCC
Q 022295 218 AGQAM 222 (299)
Q Consensus 218 ~g~p~ 222 (299)
.|.|.
T Consensus 80 ag~p~ 84 (309)
T cd05294 80 AGVPR 84 (309)
T ss_pred cCCCC
Confidence 99765
No 400
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.59 E-value=0.2 Score=47.81 Aligned_cols=53 Identities=25% Similarity=0.431 Sum_probs=40.3
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCC-------------------------CChhhhccCCcEEEEecCC
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHT-------------------------TDPESIVREADIVIAAAGQ 220 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t-------------------------~~l~~~~~~ADIVIsa~g~ 220 (299)
.+|.|||+|. ||..+|..|+..+. ++.+++.+. .+. +.+++|||||.+.|.
T Consensus 4 ~Ki~IiGaG~-VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy-~~~~~adivvitaG~ 81 (312)
T cd05293 4 NKVTVVGVGQ-VGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDY-SVTANSKVVIVTAGA 81 (312)
T ss_pred CEEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCH-HHhCCCCEEEECCCC
Confidence 5899999866 69999999988873 577776431 233 458999999998996
Q ss_pred CC
Q 022295 221 AM 222 (299)
Q Consensus 221 p~ 222 (299)
|.
T Consensus 82 ~~ 83 (312)
T cd05293 82 RQ 83 (312)
T ss_pred CC
Confidence 53
No 401
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=93.56 E-value=0.18 Score=48.18 Aligned_cols=53 Identities=28% Similarity=0.463 Sum_probs=40.4
Q ss_pred cEEEEEcCCccchHHHHHHHhhCC-C-eEEEEcCCC--------------------------CChhhhccCCcEEEEecC
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKAD-A-TVTIVHSHT--------------------------TDPESIVREADIVIAAAG 219 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~g-a-tVtv~~~~t--------------------------~~l~~~~~~ADIVIsa~g 219 (299)
++|+|||+|+ ||.++|.+|+.++ + .+.+.+... .+ .+.++.||+||-+.|
T Consensus 1 ~KVaviGaG~-VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~-y~~~~~aDiVvitAG 78 (313)
T COG0039 1 MKVAVIGAGN-VGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGD-YEDLKGADIVVITAG 78 (313)
T ss_pred CeEEEECCCh-HHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCC-hhhhcCCCEEEEeCC
Confidence 4799999966 6999999998887 3 677775330 12 477999999998888
Q ss_pred CCC
Q 022295 220 QAM 222 (299)
Q Consensus 220 ~p~ 222 (299)
.|.
T Consensus 79 ~pr 81 (313)
T COG0039 79 VPR 81 (313)
T ss_pred CCC
Confidence 653
No 402
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=93.56 E-value=0.11 Score=50.77 Aligned_cols=34 Identities=26% Similarity=0.525 Sum_probs=30.6
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEc
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVH 198 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~ 198 (299)
.|++++|+|+|.|++ |.+++..|+..|. ++++++
T Consensus 38 ~l~~~~VliiG~Ggl-G~~v~~~La~~Gvg~i~ivD 72 (370)
T PRK05600 38 RLHNARVLVIGAGGL-GCPAMQSLASAGVGTITLID 72 (370)
T ss_pred HhcCCcEEEECCCHH-HHHHHHHHHHcCCCEEEEEe
Confidence 468899999999996 9999999999995 899986
No 403
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.56 E-value=0.076 Score=47.12 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=32.3
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
++|++++|+|.++.+|..++..|.++|++|+++.+.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~ 38 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLN 38 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 689999999998888999999999999998888754
No 404
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=93.54 E-value=0.12 Score=46.52 Aligned_cols=37 Identities=30% Similarity=0.359 Sum_probs=33.4
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.++||+++|.|+++-+|+.++..|+++|++|.++.+.
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~ 41 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRS 41 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 3689999999999999999999999999999988764
No 405
>PRK05875 short chain dehydrogenase; Provisional
Probab=93.54 E-value=0.074 Score=48.34 Aligned_cols=37 Identities=27% Similarity=0.340 Sum_probs=33.2
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
++++|+++|.|+++.+|+.++..|+++|++|+++.++
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~ 40 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRN 40 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4789999999998889999999999999999988654
No 406
>PRK07326 short chain dehydrogenase; Provisional
Probab=93.54 E-value=0.077 Score=46.84 Aligned_cols=36 Identities=31% Similarity=0.468 Sum_probs=32.4
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+.+++++|+|+++-+|+.++..|+++|++|.++.++
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~ 39 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARD 39 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCC
Confidence 468999999999999999999999999999988764
No 407
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=93.52 E-value=0.2 Score=47.69 Aligned_cols=77 Identities=26% Similarity=0.405 Sum_probs=58.4
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC--------------CChhhhccCCcEEEEecCCCCc-----
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT--------------TDPESIVREADIVIAAAGQAMM----- 223 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t--------------~~l~~~~~~ADIVIsa~g~p~~----- 223 (299)
++-+-+++=-||-|.+ |.+++..|.+.|.+||+.+++- ....|..+.+|+||+.++.|.-
T Consensus 31 ~~~s~~~iGFIGLG~M-G~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~ 109 (327)
T KOG0409|consen 31 ITPSKTRIGFIGLGNM-GSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVL 109 (327)
T ss_pred CCcccceeeEEeeccc-hHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHh
Confidence 3446788999999987 9999999999999999999762 2345889999999999998762
Q ss_pred CCCC----ccCCCeEE-EEeec
Q 022295 224 IKGS----WIKPGAAV-IDVGT 240 (299)
Q Consensus 224 i~~~----~vk~gavV-IDvg~ 240 (299)
.... -+++|... ||..+
T Consensus 110 ~g~~Gvl~g~~~g~~~~vDmST 131 (327)
T KOG0409|consen 110 LGKSGVLSGIRPGKKATVDMST 131 (327)
T ss_pred cCCCcceeeccCCCceEEeccc
Confidence 2221 13466555 78764
No 408
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=93.51 E-value=0.13 Score=49.75 Aligned_cols=54 Identities=13% Similarity=0.145 Sum_probs=42.3
Q ss_pred CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC---------------C------hhhhccCCcEEEEecC
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT---------------D------PESIVREADIVIAAAG 219 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~---------------~------l~~~~~~ADIVIsa~g 219 (299)
++|+|+|.|++|.+|+.++..|.++|..|+.+.+... | +...++.+|+||..++
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa 94 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLAA 94 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEccc
Confidence 6799999999999999999999999999988764311 1 1234567899997665
No 409
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=93.48 E-value=0.13 Score=45.26 Aligned_cols=37 Identities=30% Similarity=0.371 Sum_probs=32.8
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
++++|+++|.|.++-+|+.++..|+++|++|+++.++
T Consensus 2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~ 38 (248)
T PRK05557 2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYAS 38 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4688999999999999999999999999999777554
No 410
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=93.44 E-value=0.085 Score=52.92 Aligned_cols=76 Identities=26% Similarity=0.354 Sum_probs=53.8
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC-------------------CCChhhhccCCcEEEEecCCC--Cc
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH-------------------TTDPESIVREADIVIAAAGQA--MM 223 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~-------------------t~~l~~~~~~ADIVIsa~g~p--~~ 223 (299)
|+||+|+|||.|.. |+.-|.-|...|..|++.-|. ..++.+.++.||+|+..++.. +.
T Consensus 34 LkgKtIaIIGyGSq-G~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPDt~q~~ 112 (487)
T PRK05225 34 LKGKKIVIVGCGAQ-GLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQHSD 112 (487)
T ss_pred hCCCEEEEEccCHH-HHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCChHHHHH
Confidence 68999999999886 998888888889888855432 124678899999999998842 12
Q ss_pred CCC---CccCCCeE-EEEeecc
Q 022295 224 IKG---SWIKPGAA-VIDVGTN 241 (299)
Q Consensus 224 i~~---~~vk~gav-VIDvg~~ 241 (299)
+.. ..+|+|++ .+-=|+|
T Consensus 113 v~~~i~p~LK~Ga~L~fsHGFn 134 (487)
T PRK05225 113 VVRAVQPLMKQGAALGYSHGFN 134 (487)
T ss_pred HHHHHHhhCCCCCEEEecCCce
Confidence 322 34577754 3333444
No 411
>PRK06198 short chain dehydrogenase; Provisional
Probab=93.44 E-value=0.097 Score=46.98 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=33.5
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCe-EEEEcCCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADAT-VTIVHSHT 201 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gat-Vtv~~~~t 201 (299)
.+++|+++|.|+++-+|+.++..|.++|++ |+++.++.
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~ 41 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNA 41 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCH
Confidence 368899999999999999999999999998 88887653
No 412
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.42 E-value=0.53 Score=46.57 Aligned_cols=75 Identities=9% Similarity=0.148 Sum_probs=55.4
Q ss_pred CCCcCCcEEEEEcCC---------ccchHHHHHHHhhCC-CeEEEEcCC-------------CCChhhhccCCcEEEEec
Q 022295 162 GVTIKGKRAVVVGRS---------NIVGLPVSLLLLKAD-ATVTIVHSH-------------TTDPESIVREADIVIAAA 218 (299)
Q Consensus 162 ~~~l~gk~vvViG~s---------~~vG~pla~lL~~~g-atVtv~~~~-------------t~~l~~~~~~ADIVIsa~ 218 (299)
+.+++|++|.|+|-+ +.-...++..|.++| +.|.+.+.. ..++.+.++.||.||..|
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t 394 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLV 394 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECC
Confidence 677999999999932 223678999999996 999886532 135678899999999999
Q ss_pred CCCCcCCCCc--cCCCeEEEE
Q 022295 219 GQAMMIKGSW--IKPGAAVID 237 (299)
Q Consensus 219 g~p~~i~~~~--vk~gavVID 237 (299)
..+.|-..+| ++. -+|||
T Consensus 395 ~~~~~~~~~~~~~~~-~~v~D 414 (415)
T PRK11064 395 DHSQFKAINGDNVHQ-QWVVD 414 (415)
T ss_pred CCHHhccCCHHHhCC-CEEEe
Confidence 9988743332 543 36777
No 413
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.40 E-value=0.1 Score=52.94 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=28.7
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
++|.|||.|.+ |.++|..|+..|..|++.+++
T Consensus 6 ~kV~VIGaG~M-G~gIA~~la~aG~~V~l~d~~ 37 (503)
T TIGR02279 6 VTVAVIGAGAM-GAGIAQVAASAGHQVLLYDIR 37 (503)
T ss_pred cEEEEECcCHH-HHHHHHHHHhCCCeEEEEeCC
Confidence 67999998775 999999999999999999754
No 414
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=93.39 E-value=0.51 Score=46.90 Aligned_cols=77 Identities=21% Similarity=0.268 Sum_probs=55.3
Q ss_pred hCCCcCCcEEEEEcCC---------ccchHHHHHHHhhCCCeEEEEcCC-CC-------C---hhh-hccCCcEEEEecC
Q 022295 161 SGVTIKGKRAVVVGRS---------NIVGLPVSLLLLKADATVTIVHSH-TT-------D---PES-IVREADIVIAAAG 219 (299)
Q Consensus 161 ~~~~l~gk~vvViG~s---------~~vG~pla~lL~~~gatVtv~~~~-t~-------~---l~~-~~~~ADIVIsa~g 219 (299)
++.+++|++|.|+|-+ +.-+..++..|..+|+.|.+.+-. .. . +.. .+..||.||..|.
T Consensus 308 ~~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~ 387 (425)
T PRK15182 308 KGINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVSEVKSSHYDAIIVAVG 387 (425)
T ss_pred cCCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccchhhhhcCCCEEEEccC
Confidence 3567899999999932 234789999999999999988754 10 1 112 3578999999999
Q ss_pred CCCc--CCCCcc----CCCeEEEE
Q 022295 220 QAMM--IKGSWI----KPGAAVID 237 (299)
Q Consensus 220 ~p~~--i~~~~v----k~gavVID 237 (299)
.+.| ++.+++ +...+|||
T Consensus 388 h~~f~~~~~~~~~~~~~~~~~iiD 411 (425)
T PRK15182 388 HQQFKQMGSEDIRGFGKDKHVLYD 411 (425)
T ss_pred CHHhhcCCHHHHHHhcCCCCEEEE
Confidence 9887 443344 32358999
No 415
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.39 E-value=0.12 Score=46.65 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=31.3
Q ss_pred cCCcEEEEEcCC--ccchHHHHHHHhhCCCeEEEEcCC
Q 022295 165 IKGKRAVVVGRS--NIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 165 l~gk~vvViG~s--~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
++||.++|.|+| .-+|+.+|..|+++|++|.++.++
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~ 42 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN 42 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence 689999999997 345999999999999999988654
No 416
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=93.37 E-value=0.2 Score=47.78 Aligned_cols=94 Identities=27% Similarity=0.250 Sum_probs=60.1
Q ss_pred ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCe-EEEEcCC-------------------CCChh-
Q 022295 147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADAT-VTIVHSH-------------------TTDPE- 205 (299)
Q Consensus 147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gat-Vtv~~~~-------------------t~~l~- 205 (299)
++|...+.+..+....---.|.+|+|.|.| .+|..+++++...|++ |+.+.+. ..+..
T Consensus 157 l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g-~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~ 235 (358)
T TIGR03451 157 LGCGVMAGLGAAVNTGGVKRGDSVAVIGCG-GVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVE 235 (358)
T ss_pred hcccchhhHHHHHhccCCCCCCEEEEECCC-HHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHH
Confidence 444444434333332223468999999975 5799999999999985 7666432 11221
Q ss_pred ---hhc--cCCcEEEEecCCCCcCC--CCccCCCeEEEEeecc
Q 022295 206 ---SIV--READIVIAAAGQAMMIK--GSWIKPGAAVIDVGTN 241 (299)
Q Consensus 206 ---~~~--~~ADIVIsa~g~p~~i~--~~~vk~gavVIDvg~~ 241 (299)
+.+ +.+|+||.++|.+..+. -+.+++|..++-+|..
T Consensus 236 ~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~~ 278 (358)
T TIGR03451 236 AIRALTGGFGADVVIDAVGRPETYKQAFYARDLAGTVVLVGVP 278 (358)
T ss_pred HHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCC
Confidence 222 24799999999765432 2457888888888864
No 417
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.37 E-value=0.12 Score=47.48 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=31.2
Q ss_pred cCCcEEEEEcCCc--cchHHHHHHHhhCCCeEEEEcCC
Q 022295 165 IKGKRAVVVGRSN--IVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 165 l~gk~vvViG~s~--~vG~pla~lL~~~gatVtv~~~~ 200 (299)
++||.++|.|+|. -+|+.+|..|+++|++|.++.++
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~ 42 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQG 42 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCc
Confidence 6899999999983 35999999999999999988653
No 418
>PRK12937 short chain dehydrogenase; Provisional
Probab=93.36 E-value=0.14 Score=45.35 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=32.2
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS 199 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~ 199 (299)
++++|+++|.|.++-+|+.++..|+++|++|.++.+
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~ 37 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYA 37 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecC
Confidence 467899999999999999999999999999887754
No 419
>PLN02214 cinnamoyl-CoA reductase
Probab=93.36 E-value=0.2 Score=47.63 Aligned_cols=35 Identities=23% Similarity=0.205 Sum_probs=31.1
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS 199 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~ 199 (299)
+++|+|+|.|+++.+|+.++..|+++|..|+.+.+
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r 42 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVR 42 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence 57899999999999999999999999998877644
No 420
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.35 E-value=0.38 Score=47.46 Aligned_cols=85 Identities=20% Similarity=0.181 Sum_probs=61.5
Q ss_pred HHHHHHHHhhCCCcCCcEEEEEcCC---------ccchHHHHHHHhhCCCeEEEEcCC--------------CCChhhhc
Q 022295 152 KGCLELLKRSGVTIKGKRAVVVGRS---------NIVGLPVSLLLLKADATVTIVHSH--------------TTDPESIV 208 (299)
Q Consensus 152 ~av~~ll~~~~~~l~gk~vvViG~s---------~~vG~pla~lL~~~gatVtv~~~~--------------t~~l~~~~ 208 (299)
.-+.+++..+.- ++||++.|.|-+ +.-..+++..|..+||+|.+.+.. ..++.+.+
T Consensus 296 ~~~~~~i~~~~~-l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~ 374 (414)
T COG1004 296 DKLAEKILNHLG-LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEAL 374 (414)
T ss_pred HHHHHHHHHhcC-CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHH
Confidence 334444443333 999999999922 223678999999999999998632 24677899
Q ss_pred cCCcEEEEecCCCCcCCCCcc---CCCeEEEE
Q 022295 209 READIVIAAAGQAMMIKGSWI---KPGAAVID 237 (299)
Q Consensus 209 ~~ADIVIsa~g~p~~i~~~~v---k~gavVID 237 (299)
+.||++|..|.+..|-..+|- -++.+|+|
T Consensus 375 ~~aDaivi~tew~ef~~~d~~~~~m~~~~v~D 406 (414)
T COG1004 375 KGADAIVINTEWDEFRDLDFEKLLMKTPVVID 406 (414)
T ss_pred hhCCEEEEeccHHHHhccChhhhhccCCEEEe
Confidence 999999999999887655543 24567777
No 421
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.35 E-value=0.14 Score=46.55 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=32.0
Q ss_pred CCcCCcEEEEEcCC--ccchHHHHHHHhhCCCeEEEEcCC
Q 022295 163 VTIKGKRAVVVGRS--NIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 163 ~~l~gk~vvViG~s--~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.+++||.++|.|+| .-+|+.+|..|+++|++|.++.++
T Consensus 6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~ 45 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLN 45 (258)
T ss_pred cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 35789999999987 235999999999999999888654
No 422
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.33 E-value=0.13 Score=49.92 Aligned_cols=34 Identities=26% Similarity=0.500 Sum_probs=30.0
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEc
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVH 198 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~ 198 (299)
.|++++|+|+|.|+. |.+++..|+..|. ++++++
T Consensus 25 ~L~~~~VlivG~GGl-Gs~~a~~La~~Gvg~i~lvD 59 (355)
T PRK05597 25 SLFDAKVAVIGAGGL-GSPALLYLAGAGVGHITIID 59 (355)
T ss_pred HHhCCeEEEECCCHH-HHHHHHHHHHcCCCeEEEEe
Confidence 467899999999996 9999999999995 788886
No 423
>PRK05086 malate dehydrogenase; Provisional
Probab=93.32 E-value=0.23 Score=47.30 Aligned_cols=55 Identities=25% Similarity=0.424 Sum_probs=39.4
Q ss_pred cEEEEEcCCccchHHHHHHHhh-CC--CeEEEEcCC-----------------------CCChhhhccCCcEEEEecCCC
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLK-AD--ATVTIVHSH-----------------------TTDPESIVREADIVIAAAGQA 221 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~-~g--atVtv~~~~-----------------------t~~l~~~~~~ADIVIsa~g~p 221 (299)
++++|||+++.||..++..|.. .+ ..++++.++ ..++.+.++++|+||.+.|.|
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 4799999966689999987744 22 355665421 124457789999999999975
Q ss_pred C
Q 022295 222 M 222 (299)
Q Consensus 222 ~ 222 (299)
+
T Consensus 81 ~ 81 (312)
T PRK05086 81 R 81 (312)
T ss_pred C
Confidence 4
No 424
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=93.32 E-value=0.13 Score=45.64 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=32.2
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
++||+++|.|+++.+|+.++..|+++|++|.+..++
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~ 36 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLN 36 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCC
Confidence 578999999999999999999999999999887543
No 425
>PLN02778 3,5-epimerase/4-reductase
Probab=93.31 E-value=0.24 Score=46.40 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=40.9
Q ss_pred CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC---hhhhcc--CCcEEEEecCC
Q 022295 167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD---PESIVR--EADIVIAAAGQ 220 (299)
Q Consensus 167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~---l~~~~~--~ADIVIsa~g~ 220 (299)
.++|+|.|++|.+|..++..|.++|.+|+.....-.+ +...++ +.|+||.+++.
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~~~~~~~~~v~~~l~~~~~D~ViH~Aa~ 67 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGSGRLENRASLEADIDAVKPTHVFNAAGV 67 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCEEEEecCccCCHHHHHHHHHhcCCCEEEECCcc
Confidence 4789999999999999999999999998765433223 223333 68999977663
No 426
>PRK06197 short chain dehydrogenase; Provisional
Probab=93.30 E-value=0.074 Score=49.48 Aligned_cols=37 Identities=24% Similarity=0.305 Sum_probs=32.8
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+++||.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus 13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~ 49 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRN 49 (306)
T ss_pred cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 4689999999998889999999999999998877653
No 427
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=93.29 E-value=0.28 Score=47.28 Aligned_cols=96 Identities=22% Similarity=0.249 Sum_probs=63.4
Q ss_pred CcEEEEEcCCccchHHHHHHHhhCCC---eEEEEcCCC----------------CC--h-hhhccCCcEEEEecCC--CC
Q 022295 167 GKRAVVVGRSNIVGLPVSLLLLKADA---TVTIVHSHT----------------TD--P-ESIVREADIVIAAAGQ--AM 222 (299)
Q Consensus 167 gk~vvViG~s~~vG~pla~lL~~~ga---tVtv~~~~t----------------~~--l-~~~~~~ADIVIsa~g~--p~ 222 (299)
+++|.|+|+.|.||+-+..+|.+++. .+.+..|.. .+ . ....++.||++++.|. ..
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s~ 80 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVSK 80 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHHH
Confidence 36899999999999999999998763 244443321 01 0 1235579999999974 22
Q ss_pred cCCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhh
Q 022295 223 MIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACK 265 (299)
Q Consensus 223 ~i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~ 265 (299)
-+-+...+.|.+|||-.....-+++-+ -++--|+.+...+
T Consensus 81 ~~~p~~~~~G~~VIdnsSa~Rm~~DVP---LVVPeVN~~~l~~ 120 (334)
T COG0136 81 EVEPKAAEAGCVVIDNSSAFRMDPDVP---LVVPEVNPEHLID 120 (334)
T ss_pred HHHHHHHHcCCEEEeCCcccccCCCCC---EecCCcCHHHHHh
Confidence 355566788999999887654333221 3566677655444
No 428
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.29 E-value=0.17 Score=49.74 Aligned_cols=53 Identities=34% Similarity=0.439 Sum_probs=44.6
Q ss_pred EEEEEcCCccchHHHHHHHhhCCCeEEEEcCC----------------------------------CCChhhhccCCcEE
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSH----------------------------------TTDPESIVREADIV 214 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~----------------------------------t~~l~~~~~~ADIV 214 (299)
+++|+|.|= ||-..+..|++.|..|+.++.. |.|.++..++||++
T Consensus 2 kI~viGtGY-VGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 2 KITVIGTGY-VGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred ceEEECCch-HHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 689999655 7999999999999999988632 45777889999999
Q ss_pred EEecCCCC
Q 022295 215 IAAAGQAM 222 (299)
Q Consensus 215 Isa~g~p~ 222 (299)
|-|+|.|.
T Consensus 81 fIavgTP~ 88 (414)
T COG1004 81 FIAVGTPP 88 (414)
T ss_pred EEEcCCCC
Confidence 99999764
No 429
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.29 E-value=0.16 Score=46.17 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=31.0
Q ss_pred CcCCcEEEEEcCC--ccchHHHHHHHhhCCCeEEEEcC
Q 022295 164 TIKGKRAVVVGRS--NIVGLPVSLLLLKADATVTIVHS 199 (299)
Q Consensus 164 ~l~gk~vvViG~s--~~vG~pla~lL~~~gatVtv~~~ 199 (299)
+++||.++|.|++ .-+|+.+|..|+++|++|.++.+
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r 41 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYA 41 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecC
Confidence 5789999999985 33599999999999999998854
No 430
>PLN02253 xanthoxin dehydrogenase
Probab=93.28 E-value=0.095 Score=47.80 Aligned_cols=37 Identities=32% Similarity=0.404 Sum_probs=33.1
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~ 51 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQ 51 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 4689999999999999999999999999999888643
No 431
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.27 E-value=0.21 Score=49.11 Aligned_cols=106 Identities=19% Similarity=0.256 Sum_probs=66.5
Q ss_pred CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCChh--------------hhccCCcEEEEecCCCCcCCCCc---
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPE--------------SIVREADIVIAAAGQAMMIKGSW--- 228 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~l~--------------~~~~~ADIVIsa~g~p~~i~~~~--- 228 (299)
..++|+|+|-|.+ |+.+|++|.++|++|+.++.+...+. ....++|++|...|.+.. .++
T Consensus 2 ~~~~i~iiGlG~~-G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~--~~~l~~ 78 (418)
T PRK00683 2 GLQRVVVLGLGVT-GKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKE--HPWVQA 78 (418)
T ss_pred CCCeEEEEEECHH-HHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCC--cHHHHH
Confidence 3478999999997 99999999999999999986533211 113567888877775421 112
Q ss_pred -cCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhh-h-hceeccCCCCccHHHHHHHHHHHHHHH
Q 022295 229 -IKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACK-V-AGCVTPVPGGVGPMTVAMLLRNTLDGA 293 (299)
Q Consensus 229 -vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~-~-a~~iTPVPGGVGp~T~a~L~~n~v~a~ 293 (299)
.+.|+. ++.|.++.-... . ....--|-|-.|.=|+.-|+.++++..
T Consensus 79 A~~~g~~-------------------vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~ 127 (418)
T PRK00683 79 AIASHIP-------------------VVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRL 127 (418)
T ss_pred HHHCCCc-------------------EEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHc
Confidence 233432 333333211100 0 000112558899999999999998764
No 432
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=93.26 E-value=0.18 Score=47.67 Aligned_cols=51 Identities=27% Similarity=0.464 Sum_probs=40.3
Q ss_pred EEEEcCCccchHHHHHHHhhCC--CeEEEEcCCC-------------------------CChhhhccCCcEEEEecCCCC
Q 022295 170 AVVVGRSNIVGLPVSLLLLKAD--ATVTIVHSHT-------------------------TDPESIVREADIVIAAAGQAM 222 (299)
Q Consensus 170 vvViG~s~~vG~pla~lL~~~g--atVtv~~~~t-------------------------~~l~~~~~~ADIVIsa~g~p~ 222 (299)
+.|||+|. ||.++|..|+..| .++++++.+. .+ .+.+++||+||.++|.|.
T Consensus 1 i~iiGaG~-VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~ 78 (300)
T cd00300 1 ITIIGAGN-VGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPR 78 (300)
T ss_pred CEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCC
Confidence 47999987 6999999999888 4688887431 12 367899999999999764
No 433
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=93.26 E-value=0.12 Score=52.59 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=28.6
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
++|.|||.|.+ |.++|..|+..|..|++.+++
T Consensus 8 ~~V~VIGaG~M-G~gIA~~la~aG~~V~l~D~~ 39 (507)
T PRK08268 8 ATVAVIGAGAM-GAGIAQVAAQAGHTVLLYDAR 39 (507)
T ss_pred CEEEEECCCHH-HHHHHHHHHhCCCeEEEEeCC
Confidence 68999998775 999999999999999999754
No 434
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=93.24 E-value=0.096 Score=50.73 Aligned_cols=111 Identities=25% Similarity=0.422 Sum_probs=63.4
Q ss_pred EEEEcCCccchHHHHHHHhhCCC--eEEEEcCCC-------------------------CChhhhccCCcEEEEecCCCC
Q 022295 170 AVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHT-------------------------TDPESIVREADIVIAAAGQAM 222 (299)
Q Consensus 170 vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t-------------------------~~l~~~~~~ADIVIsa~g~p~ 222 (299)
|+|+|. |.+|+.++..|++.+- +|+++.++. ..+.+.++++|+||+++|...
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~~ 79 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPFF 79 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGGG
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccch
Confidence 688998 5579999998888863 788887541 126678999999999998652
Q ss_pred -c-CCCCccCCCeEEEEeeccCCCCCccCCCceeeccCCchhhhhhhceeccCC-CCccHHHHHHHHHHHHHHHH
Q 022295 223 -M-IKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVP-GGVGPMTVAMLLRNTLDGAK 294 (299)
Q Consensus 223 -~-i~~~~vk~gavVIDvg~~~~~~~~~~~g~kl~GDvdf~~~~~~a~~iTPVP-GGVGp~T~a~L~~n~v~a~~ 294 (299)
. +-...++-|.-.+|.++-. . .+ -.+++.++.++. |=++ =|.-|--+.+|...+++.+.
T Consensus 80 ~~~v~~~~i~~g~~yvD~~~~~--~-------~~---~~l~~~a~~~g~-~~l~~~G~~PGl~~~~a~~~~~~~~ 141 (386)
T PF03435_consen 80 GEPVARACIEAGVHYVDTSYVT--E-------EM---LALDEEAKEAGV-TALPGCGFDPGLSNLLARYAADELD 141 (386)
T ss_dssp HHHHHHHHHHHT-EEEESS-HH--H-------HH---HHCHHHHHHTTS-EEE-S-BTTTBHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCeeccchhH--H-------HH---HHHHHHHHhhCC-EEEeCcccccchHHHHHHHHHHHhh
Confidence 1 3334456688888955410 0 00 012333333332 2222 25556666777776665543
No 435
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=93.23 E-value=0.11 Score=46.02 Aligned_cols=37 Identities=27% Similarity=0.417 Sum_probs=32.4
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
++++|+++|.|+++.+|+.++..|+++|+.|++..++
T Consensus 3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~ 39 (245)
T PRK12936 3 DLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTR 39 (245)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCC
Confidence 4688999999999999999999999999988776544
No 436
>PRK08643 acetoin reductase; Validated
Probab=93.23 E-value=0.1 Score=46.80 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=31.0
Q ss_pred CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
||.++|+|+++-+|+.++..|+++|++|.++.++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~ 35 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYN 35 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 7899999999999999999999999999888654
No 437
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.22 E-value=0.14 Score=47.92 Aligned_cols=39 Identities=31% Similarity=0.331 Sum_probs=35.0
Q ss_pred CCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 162 GVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 162 ~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
..+++||.++|.|+++-+|+.++..|+++|++|.++.+.
T Consensus 7 ~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~ 45 (306)
T PRK07792 7 TTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVA 45 (306)
T ss_pred CcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCC
Confidence 467899999999999999999999999999999888653
No 438
>PRK12827 short chain dehydrogenase; Provisional
Probab=93.18 E-value=0.15 Score=45.03 Aligned_cols=35 Identities=20% Similarity=0.423 Sum_probs=31.3
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEc
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVH 198 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~ 198 (299)
++++++++|.|+++.+|+.++..|+++|++|++..
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~ 37 (249)
T PRK12827 3 SLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLD 37 (249)
T ss_pred CcCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEc
Confidence 36789999999999999999999999999988754
No 439
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.16 E-value=0.44 Score=48.12 Aligned_cols=83 Identities=19% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHhhCCCcCCcEEEEEc----------CCccchHHHHHHHhhCCCeEEEEcCC-----------------------
Q 022295 154 CLELLKRSGVTIKGKRAVVVG----------RSNIVGLPVSLLLLKADATVTIVHSH----------------------- 200 (299)
Q Consensus 154 v~~ll~~~~~~l~gk~vvViG----------~s~~vG~pla~lL~~~gatVtv~~~~----------------------- 200 (299)
+-++.+.+.-+++|++|.|+| |.-. ...++..|.++|++|.+.+-.
T Consensus 311 v~~~~~~l~~~~~~~~VavlGlafK~~tdD~R~Sp-a~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~ 389 (473)
T PLN02353 311 VNRVVSSMFNTVSGKKIAVLGFAFKKDTGDTRETP-AIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHL 389 (473)
T ss_pred HHHHHHHhhcccCCCEEEEEeeeecCCCCccccCh-HHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccc
Q ss_pred -------------CCChhhhccCCcEEEEecCCCCc--CC----CCccCCCeEEEE
Q 022295 201 -------------TTDPESIVREADIVIAAAGQAMM--IK----GSWIKPGAAVID 237 (299)
Q Consensus 201 -------------t~~l~~~~~~ADIVIsa~g~p~~--i~----~~~vk~gavVID 237 (299)
..++.+.++.||+||.+|..+.| ++ .+.+++..+|||
T Consensus 390 ~~~~~~~~~~~~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD 445 (473)
T PLN02353 390 QPMSPTAVKQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFD 445 (473)
T ss_pred cccccccccceeeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEE
No 440
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=93.15 E-value=0.14 Score=52.76 Aligned_cols=36 Identities=25% Similarity=0.123 Sum_probs=32.0
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.+||.++|.|+++-+|+.++..|+++|++|+++.++
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn 113 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRS 113 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 478999999998889999999999999999887654
No 441
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=93.09 E-value=0.14 Score=56.10 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=31.0
Q ss_pred hhhhccCCcEEEEecC----CCCcCCCC-c---cCCCe----EEEEeeccC
Q 022295 204 PESIVREADIVIAAAG----QAMMIKGS-W---IKPGA----AVIDVGTNA 242 (299)
Q Consensus 204 l~~~~~~ADIVIsa~g----~p~~i~~~-~---vk~ga----vVIDvg~~~ 242 (299)
++++++.||++|+++- .|.+|+.+ | +|+|. +|+||.++.
T Consensus 291 ~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs~D~ 341 (1042)
T PLN02819 291 HEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDITCDI 341 (1042)
T ss_pred HHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEccCC
Confidence 3568899999999884 47789888 4 36787 999999864
No 442
>PRK08278 short chain dehydrogenase; Provisional
Probab=93.08 E-value=0.15 Score=46.74 Aligned_cols=37 Identities=24% Similarity=0.444 Sum_probs=33.3
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~ 39 (273)
T PRK08278 3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKT 39 (273)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecc
Confidence 3688999999999999999999999999999888754
No 443
>PRK09135 pteridine reductase; Provisional
Probab=93.08 E-value=0.15 Score=45.08 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=32.4
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
..+++++|.|+++.+|+.++..|+++|++|+++.++
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~ 39 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHR 39 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 467899999999999999999999999999988754
No 444
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=93.07 E-value=0.25 Score=47.56 Aligned_cols=36 Identities=31% Similarity=0.356 Sum_probs=32.3
Q ss_pred CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT 201 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t 201 (299)
.++.|+|-|+||-+|.-++..|+.+|++|.-.-|..
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~ 40 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDP 40 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCc
Confidence 679999999999999999999999999988776543
No 445
>PRK08226 short chain dehydrogenase; Provisional
Probab=93.04 E-value=0.16 Score=45.79 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=32.8
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+++|+++|.|.++-+|+.++..|+++|++|+++.+.
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~ 39 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANLILLDIS 39 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCC
Confidence 678999999999999999999999999999888764
No 446
>PRK06914 short chain dehydrogenase; Provisional
Probab=93.01 E-value=0.14 Score=46.66 Aligned_cols=35 Identities=31% Similarity=0.278 Sum_probs=31.3
Q ss_pred CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.+|.++|.|+++.+|+.++..|+++|+.|+++.++
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~ 36 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRN 36 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCC
Confidence 57899999999999999999999999999887654
No 447
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.01 E-value=0.24 Score=51.70 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=31.3
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
-.|++|+|||+|.+ |...|..|.+.|+.|+++.+.
T Consensus 325 ~~~~~VaIIGaGpA-GLsaA~~L~~~G~~V~V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPA-GLACADVLARNGVAVTVYDRH 359 (654)
T ss_pred cCCCEEEEECCCHH-HHHHHHHHHHCCCeEEEEecC
Confidence 36899999998887 999999999999999999753
No 448
>PRK07109 short chain dehydrogenase; Provisional
Probab=93.00 E-value=0.093 Score=49.96 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=33.5
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
++++|.++|.|+++-+|+.++..|+++|++|+++.++
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~ 41 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARG 41 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 4678999999999989999999999999999988765
No 449
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=92.98 E-value=0.21 Score=46.93 Aligned_cols=51 Identities=25% Similarity=0.386 Sum_probs=38.3
Q ss_pred EEEEcCCccchHHHHHHHhhCCC-eEEEEcCC--------------------------CCChhhhccCCcEEEEecCCCC
Q 022295 170 AVVVGRSNIVGLPVSLLLLKADA-TVTIVHSH--------------------------TTDPESIVREADIVIAAAGQAM 222 (299)
Q Consensus 170 vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~--------------------------t~~l~~~~~~ADIVIsa~g~p~ 222 (299)
|.|||+|. ||..+|..|+..+. +|++++.. +.+. +.+++||+||.++|.|.
T Consensus 1 I~IIGaG~-vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g~p~ 78 (300)
T cd01339 1 ISIIGAGN-VGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAGIPR 78 (300)
T ss_pred CEEECCCH-HHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecCCCC
Confidence 57899865 59999998887764 88888643 1233 56899999999998764
No 450
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.94 E-value=0.21 Score=43.50 Aligned_cols=30 Identities=17% Similarity=0.433 Sum_probs=25.4
Q ss_pred EEEEEcCCccchHHHHHHHhhCCC-eEEEEcC
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADA-TVTIVHS 199 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~ 199 (299)
+|+|+|.|++ |-.++..|+..|. ++++++.
T Consensus 1 ~VlViG~Ggl-Gs~ia~~La~~Gvg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGAGGL-GSNIAVLLARSGVGNLKLVDF 31 (174)
T ss_pred CEEEECcCHH-HHHHHHHHHHcCCCeEEEEeC
Confidence 4899999885 9999999999997 6888863
No 451
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.93 E-value=0.17 Score=45.01 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=31.4
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS 199 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~ 199 (299)
+++|+++|.|+++-+|+.++..|+++|++|.++.+
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~ 37 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYH 37 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence 57899999999999999999999999999887644
No 452
>PRK07806 short chain dehydrogenase; Provisional
Probab=92.93 E-value=0.17 Score=44.98 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=32.2
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~ 39 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQ 39 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 678999999998888999999999999999887654
No 453
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=92.93 E-value=0.12 Score=46.56 Aligned_cols=37 Identities=22% Similarity=0.418 Sum_probs=32.9
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.++||+++|+|.++-+|+.++..|.++|++|.++.++
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~ 44 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN 44 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 3679999999999999999999999999998877654
No 454
>PRK05993 short chain dehydrogenase; Provisional
Probab=92.93 E-value=0.13 Score=47.22 Aligned_cols=35 Identities=14% Similarity=0.080 Sum_probs=31.5
Q ss_pred CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.+|.++|.|+++-+|+.++..|+++|++|.++.++
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRK 37 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 36899999998888999999999999999998765
No 455
>PRK07577 short chain dehydrogenase; Provisional
Probab=92.93 E-value=0.18 Score=44.31 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.+|+++|.|.++-+|+.++..|+++|++|+++.++
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~ 36 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARS 36 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 57899999999999999999999999999888764
No 456
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=92.92 E-value=0.24 Score=42.46 Aligned_cols=75 Identities=27% Similarity=0.309 Sum_probs=42.9
Q ss_pred CCcEEEEEcCC-ccchHHHHHHHhhCCCeEEEEcCC---------------------------CCChhhhccCCcEEEEe
Q 022295 166 KGKRAVVVGRS-NIVGLPVSLLLLKADATVTIVHSH---------------------------TTDPESIVREADIVIAA 217 (299)
Q Consensus 166 ~gk~vvViG~s-~~vG~pla~lL~~~gatVtv~~~~---------------------------t~~l~~~~~~ADIVIsa 217 (299)
+|+++++||-+ +-|.+.++.+|...|++++++.-. +.++.+.+++||+|++-
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 35566666632 234556666666666555555311 23677999999999865
Q ss_pred cCC-C-------------Cc-CCCCcc---CCCeEEEEeec
Q 022295 218 AGQ-A-------------MM-IKGSWI---KPGAAVIDVGT 240 (299)
Q Consensus 218 ~g~-p-------------~~-i~~~~v---k~gavVIDvg~ 240 (299)
.=. . ++ |+.+.+ +++++++=.+-
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~LP 121 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPLP 121 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESSS
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCCC
Confidence 432 1 03 565554 57888887764
No 457
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.91 E-value=0.29 Score=52.38 Aligned_cols=119 Identities=17% Similarity=0.178 Sum_probs=71.7
Q ss_pred cEEEEEcCCccchHHH-HHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccC-CCeEEEEeeccCCCC
Q 022295 168 KRAVVVGRSNIVGLPV-SLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIK-PGAAVIDVGTNAVDD 245 (299)
Q Consensus 168 k~vvViG~s~~vG~pl-a~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk-~gavVIDvg~~~~~~ 245 (299)
+++.|+|.|+. |+.. |++|.++|++|++++.+.....+.++...+-+.. |.+ .+++. ...+|+--|+++...
T Consensus 5 ~~i~viG~G~s-G~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~-g~~----~~~~~~~d~vV~SpgI~~~~p 78 (809)
T PRK14573 5 LFYHFIGIGGI-GMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFL-GHQ----EEHVPEDAVVVYSSSISKDNV 78 (809)
T ss_pred ceEEEEEecHH-hHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeC-CCC----HHHcCCCCEEEECCCcCCCCH
Confidence 57999999997 9998 9999999999999986543222334444443322 211 12221 245566556554211
Q ss_pred C---ccCCCceeeccCCchh-hhhhhceeccCCCCccHHHHHHHHHHHHHHH
Q 022295 246 S---TKKSGYRLVGDVDFHE-ACKVAGCVTPVPGGVGPMTVAMLLRNTLDGA 293 (299)
Q Consensus 246 ~---~~~~g~kl~GDvdf~~-~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~ 293 (299)
. -...|-.+.++.++-. ..+... +--|-|--|.=||..|+.++++.+
T Consensus 79 ~~~~a~~~gi~v~~~~el~~~~~~~~~-~IaITGTnGKTTTt~li~~iL~~~ 129 (809)
T PRK14573 79 EYLSAKSRGNRLVHRAELLAELMQEQI-SILVSGSHGKTTVSSLITAIFQEA 129 (809)
T ss_pred HHHHHHHCCCcEEeHHHHHHHHHcCCC-EEEEECCCCHHHHHHHHHHHHHhC
Confidence 0 0011235788887632 212111 223668899999999999998764
No 458
>PRK07677 short chain dehydrogenase; Provisional
Probab=92.87 E-value=0.14 Score=45.97 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=30.9
Q ss_pred CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
||+++|.|.++-+|+.++..|+++|++|.++.++
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~ 34 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRT 34 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 6899999999999999999999999999888754
No 459
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=92.86 E-value=0.2 Score=37.48 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=28.4
Q ss_pred EEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT 201 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t 201 (299)
+++|||.|- +|--+|..|.+.|.+||++++..
T Consensus 1 ~vvViGgG~-ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGF-IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp EEEEESSSH-HHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEEEECcCH-HHHHHHHHHHHhCcEEEEEeccc
Confidence 689999766 59999999999999999998764
No 460
>PLN02602 lactate dehydrogenase
Probab=92.82 E-value=0.28 Score=47.61 Aligned_cols=52 Identities=29% Similarity=0.514 Sum_probs=40.2
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCC-------------------------CChhhhccCCcEEEEecCC
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHT-------------------------TDPESIVREADIVIAAAGQ 220 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t-------------------------~~l~~~~~~ADIVIsa~g~ 220 (299)
++|.|||+|. ||..+|..|+.++. .+.+++.+. .+ .+.+++|||||.+.|.
T Consensus 38 ~KI~IIGaG~-VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~d-y~~~~daDiVVitAG~ 115 (350)
T PLN02602 38 TKVSVVGVGN-VGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTD-YAVTAGSDLCIVTAGA 115 (350)
T ss_pred CEEEEECCCH-HHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCC-HHHhCCCCEEEECCCC
Confidence 6999999866 69999999988873 577776431 12 2458999999999997
Q ss_pred C
Q 022295 221 A 221 (299)
Q Consensus 221 p 221 (299)
|
T Consensus 116 ~ 116 (350)
T PLN02602 116 R 116 (350)
T ss_pred C
Confidence 5
No 461
>PRK06701 short chain dehydrogenase; Provisional
Probab=92.81 E-value=0.16 Score=47.21 Aligned_cols=38 Identities=32% Similarity=0.459 Sum_probs=34.1
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
-+++||+++|.|+++-+|..++..|+++|++|+++.++
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~ 79 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLD 79 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46789999999999999999999999999999888654
No 462
>PRK08263 short chain dehydrogenase; Provisional
Probab=92.80 E-value=0.22 Score=45.38 Aligned_cols=35 Identities=17% Similarity=0.072 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.+|.++|.|+++-+|+.++..|+++|+.|+++.++
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~ 36 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARD 36 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECC
Confidence 46899999999999999999999999999888654
No 463
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.80 E-value=0.28 Score=47.04 Aligned_cols=55 Identities=15% Similarity=0.329 Sum_probs=41.3
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCC-------eEEEEcCCC--------------------------CChhhhccCCcEE
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADA-------TVTIVHSHT--------------------------TDPESIVREADIV 214 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~ga-------tVtv~~~~t--------------------------~~l~~~~~~ADIV 214 (299)
++|.|||+++.||..+|..|+..+. .+.+.+.+. .+..+.+++||||
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 5899999956679999999987763 466665421 1234779999999
Q ss_pred EEecCCCC
Q 022295 215 IAAAGQAM 222 (299)
Q Consensus 215 Isa~g~p~ 222 (299)
|.+.|.|.
T Consensus 83 vitaG~~~ 90 (322)
T cd01338 83 LLVGAKPR 90 (322)
T ss_pred EEeCCCCC
Confidence 99999754
No 464
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.79 E-value=0.27 Score=51.26 Aligned_cols=34 Identities=24% Similarity=0.474 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.||+|+|||.|.+ |...|..|.++|+.|+++.+.
T Consensus 309 ~~kkVaIIG~Gpa-Gl~aA~~L~~~G~~Vtv~e~~ 342 (639)
T PRK12809 309 RSEKVAVIGAGPA-GLGCADILARAGVQVDVFDRH 342 (639)
T ss_pred CCCEEEEECcCHH-HHHHHHHHHHcCCcEEEEeCC
Confidence 6999999998776 999999999999999999744
No 465
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=92.79 E-value=0.15 Score=50.94 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=34.0
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.+++||+|+|||+|.. |--++..|...|++||+.-|.
T Consensus 171 ~~~~GKrV~VIG~GaS-A~di~~~l~~~ga~vt~~qRs 207 (443)
T COG2072 171 EDLRGKRVLVIGAGAS-AVDIAPELAEVGASVTLSQRS 207 (443)
T ss_pred cccCCCeEEEECCCcc-HHHHHHHHHhcCCeeEEEecC
Confidence 4899999999999988 999999999999999999765
No 466
>PRK06182 short chain dehydrogenase; Validated
Probab=92.78 E-value=0.14 Score=46.64 Aligned_cols=35 Identities=26% Similarity=0.171 Sum_probs=31.5
Q ss_pred CCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 166 ~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
++|+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~ 36 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARR 36 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 57999999998889999999999999999988654
No 467
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=92.76 E-value=0.15 Score=45.98 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=31.2
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS 199 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~ 199 (299)
...+++++|+|+++-+|+.++..|+++|++|+.+.+
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEec
Confidence 356799999999888999999999999999887643
No 468
>PRK08303 short chain dehydrogenase; Provisional
Probab=92.75 E-value=0.17 Score=47.66 Aligned_cols=37 Identities=30% Similarity=0.361 Sum_probs=33.4
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
+++||.++|.|++.-+|+.++..|+++|++|.++.++
T Consensus 5 ~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~ 41 (305)
T PRK08303 5 PLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRS 41 (305)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence 4789999999998878999999999999999988764
No 469
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.73 E-value=0.26 Score=45.17 Aligned_cols=52 Identities=23% Similarity=0.332 Sum_probs=40.7
Q ss_pred cEEEEEcCCccchHHHHHHHhhCC---CeEEEEcCCC---------------CChhhhccCCcEEEEecCC
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKAD---ATVTIVHSHT---------------TDPESIVREADIVIAAAGQ 220 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~g---atVtv~~~~t---------------~~l~~~~~~ADIVIsa~g~ 220 (299)
.++.|||.|.+ |..++..|.+.| ..|++++++. .+..+.+.++|+||.++..
T Consensus 3 m~I~iIG~G~m-G~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~ 72 (267)
T PRK11880 3 KKIGFIGGGNM-ASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP 72 (267)
T ss_pred CEEEEEechHH-HHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH
Confidence 47999998775 999999998887 5788887642 2344567899999998864
No 470
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.71 E-value=0.24 Score=47.08 Aligned_cols=53 Identities=25% Similarity=0.407 Sum_probs=39.6
Q ss_pred EEEEEcCCccchHHHHHHHhhCCC--eEEEEcCCC-------------------CC------hhhhccCCcEEEEecCCC
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADA--TVTIVHSHT-------------------TD------PESIVREADIVIAAAGQA 221 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~~t-------------------~~------l~~~~~~ADIVIsa~g~p 221 (299)
+|.|||+|. ||.++|..|+.++. .+.+.+.+. .+ -.+.+++|||||.++|.|
T Consensus 1 Ki~IIGaG~-VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~~ 79 (307)
T cd05290 1 KLVVIGAGH-VGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGPS 79 (307)
T ss_pred CEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCCC
Confidence 589999976 69999999887773 577775321 01 147799999999999975
Q ss_pred C
Q 022295 222 M 222 (299)
Q Consensus 222 ~ 222 (299)
.
T Consensus 80 ~ 80 (307)
T cd05290 80 I 80 (307)
T ss_pred C
Confidence 4
No 471
>PRK08267 short chain dehydrogenase; Provisional
Probab=92.68 E-value=0.13 Score=46.24 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=30.0
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
|+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~ 34 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDIN 34 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 689999999999999999999999999988654
No 472
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=92.68 E-value=0.11 Score=46.34 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=33.4
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.++||+++|.|.++-+|..++..|+++|++|.++.++
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~ 45 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRT 45 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCC
Confidence 4689999999999999999999999999999888764
No 473
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.67 E-value=0.25 Score=47.16 Aligned_cols=53 Identities=25% Similarity=0.417 Sum_probs=39.4
Q ss_pred EEEEEcCCccchHHHHHHHhhCCC--eEEEEcC-----------------------CCCChhhhccCCcEEEEecCCC
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADA--TVTIVHS-----------------------HTTDPESIVREADIVIAAAGQA 221 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~ga--tVtv~~~-----------------------~t~~l~~~~~~ADIVIsa~g~p 221 (299)
+|.|||++|.||..+|..|+.++. .+.+++. .+.++.+.+++|||||.+.|.|
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~ 79 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVP 79 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCC
Confidence 799999945579999999987773 4554431 1123467899999999999975
No 474
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=92.67 E-value=0.2 Score=47.17 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=32.3
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS 199 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~ 199 (299)
+++||+|+|.|+++.+|..++..|+++|++|+++.+
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r 38 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIR 38 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEec
Confidence 578999999999999999999999999999887643
No 475
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=92.64 E-value=0.37 Score=47.79 Aligned_cols=118 Identities=16% Similarity=0.238 Sum_probs=66.8
Q ss_pred EEEEEcCCccchHH-HHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCCcCCCCccC-CCeEEEEeeccCCCCC
Q 022295 169 RAVVVGRSNIVGLP-VSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIK-PGAAVIDVGTNAVDDS 246 (299)
Q Consensus 169 ~vvViG~s~~vG~p-la~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~~i~~~~vk-~gavVIDvg~~~~~~~ 246 (299)
++.+||.|++ |+. +|++|.++|++|++++.+.....+.++...+-+. .|. +++.+. ...+|+--|+++....
T Consensus 1 ~~~~iGiggs-Gm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~-~g~----~~~~~~~~d~vV~spgi~~~~p~ 74 (448)
T TIGR01082 1 KIHFVGIGGI-GMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIY-IGH----SAENLDDADVVVVSAAIKDDNPE 74 (448)
T ss_pred CEEEEEECHH-HHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEe-CCC----CHHHCCCCCEEEECCCCCCCCHH
Confidence 3689999997 997 9999999999999998654322222332222221 111 111111 2345555555432100
Q ss_pred ---ccCCCceeeccCCchh-hhhhhceeccCCCCccHHHHHHHHHHHHHHH
Q 022295 247 ---TKKSGYRLVGDVDFHE-ACKVAGCVTPVPGGVGPMTVAMLLRNTLDGA 293 (299)
Q Consensus 247 ---~~~~g~kl~GDvdf~~-~~~~a~~iTPVPGGVGp~T~a~L~~n~v~a~ 293 (299)
-...|-.+.++.++-. ..+.. .+.-|-|=-|.=|+..|+.++++.+
T Consensus 75 ~~~a~~~~i~v~~~~el~~~~~~~~-~~IaITGTnGKTTTt~ll~~iL~~~ 124 (448)
T TIGR01082 75 IVEAKERGIPVIRRAEMLAELMRFR-HSIAVAGTHGKTTTTAMIAVILKEA 124 (448)
T ss_pred HHHHHHcCCceEeHHHHHHHHHhcC-cEEEEECCCChHHHHHHHHHHHHHc
Confidence 0001224777777642 22111 1223668889999999999998764
No 476
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=92.61 E-value=0.21 Score=47.44 Aligned_cols=36 Identities=31% Similarity=0.345 Sum_probs=32.2
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
++||+++|.|+++.+|+.++..|+++|+.|+++.++
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~ 37 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLD 37 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCC
Confidence 478999999999989999999999999999887643
No 477
>PRK07985 oxidoreductase; Provisional
Probab=92.58 E-value=0.19 Score=46.75 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=32.7
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS 199 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~ 199 (299)
.++||+++|.|+++-+|+.++..|+++|++|.++.+
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~ 81 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYL 81 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecC
Confidence 479999999999999999999999999999988753
No 478
>PRK12744 short chain dehydrogenase; Provisional
Probab=92.54 E-value=0.18 Score=45.38 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=30.5
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEc
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVH 198 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~ 198 (299)
.++||+++|.|.++-+|+.++..|+++|++|.++.
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~ 39 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIH 39 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEe
Confidence 46789999999999999999999999999855553
No 479
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=92.49 E-value=0.18 Score=49.48 Aligned_cols=33 Identities=36% Similarity=0.593 Sum_probs=29.5
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEc
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVH 198 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~ 198 (299)
|+.++|+|||.|++ |-+++..|+..|. ++++++
T Consensus 40 L~~~~VlviG~GGl-Gs~va~~La~~Gvg~i~lvD 73 (392)
T PRK07878 40 LKNARVLVIGAGGL-GSPTLLYLAAAGVGTLGIVE 73 (392)
T ss_pred HhcCCEEEECCCHH-HHHHHHHHHHcCCCeEEEEC
Confidence 57789999999995 9999999999996 788886
No 480
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=92.48 E-value=0.22 Score=47.24 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=31.0
Q ss_pred CCCcCCcEEEEEcC--CccchHHHHHHHhhCCCeEEEE
Q 022295 162 GVTIKGKRAVVVGR--SNIVGLPVSLLLLKADATVTIV 197 (299)
Q Consensus 162 ~~~l~gk~vvViG~--s~~vG~pla~lL~~~gatVtv~ 197 (299)
+.+|+||.++|-|+ |.-+|+.+|..|+++||+|.++
T Consensus 4 ~~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~~ 41 (303)
T PLN02730 4 PIDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILVG 41 (303)
T ss_pred CcCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 45789999999999 3335999999999999999884
No 481
>PRK05442 malate dehydrogenase; Provisional
Probab=92.46 E-value=0.31 Score=46.85 Aligned_cols=55 Identities=18% Similarity=0.388 Sum_probs=40.3
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCC-------eEEEEcCC--------------------------CCChhhhccCCcEE
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADA-------TVTIVHSH--------------------------TTDPESIVREADIV 214 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~ga-------tVtv~~~~--------------------------t~~l~~~~~~ADIV 214 (299)
.+|.|||+++.||..+|..|...+. .+.+.+.+ +.+..+.+++||||
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 5899999956679999998887652 46666531 11334789999999
Q ss_pred EEecCCCC
Q 022295 215 IAAAGQAM 222 (299)
Q Consensus 215 Isa~g~p~ 222 (299)
|.+.|.|.
T Consensus 85 VitaG~~~ 92 (326)
T PRK05442 85 LLVGARPR 92 (326)
T ss_pred EEeCCCCC
Confidence 99999653
No 482
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=92.45 E-value=0.23 Score=45.93 Aligned_cols=52 Identities=23% Similarity=0.322 Sum_probs=40.9
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC---------------------ChhhhccCCcEEEEecC
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT---------------------DPESIVREADIVIAAAG 219 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~---------------------~l~~~~~~ADIVIsa~g 219 (299)
++++|.|+++.+|+.++..|+++|.+|+++.++.. .+.+.++.+|+||..++
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 36899999999999999999999999988865421 13355677899887665
No 483
>PRK06720 hypothetical protein; Provisional
Probab=92.44 E-value=0.16 Score=43.88 Aligned_cols=40 Identities=30% Similarity=0.405 Sum_probs=34.6
Q ss_pred CCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC
Q 022295 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT 202 (299)
Q Consensus 163 ~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~ 202 (299)
..++||.++|.|+++-+|+.++..|.++|++|.++.++..
T Consensus 12 ~~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~ 51 (169)
T PRK06720 12 MKLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQE 51 (169)
T ss_pred cccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHH
Confidence 3478999999999887899999999999999998876543
No 484
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=92.44 E-value=0.22 Score=54.40 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=31.8
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCC
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~ 200 (299)
-.||+|+|||.|.+ |..+|..|.++|..|||..+.
T Consensus 304 ~~gkkVaVIGsGPA-GLsaA~~Lar~G~~VtVfE~~ 338 (944)
T PRK12779 304 AVKPPIAVVGSGPS-GLINAYLLAVEGFPVTVFEAF 338 (944)
T ss_pred CCCCeEEEECCCHH-HHHHHHHHHHCCCeEEEEeeC
Confidence 46999999999888 999999999999999999753
No 485
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=92.43 E-value=0.21 Score=44.96 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=32.4
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS 199 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~ 199 (299)
+++||.++|.|.++-+|+.++..|+++|++|..+++
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~ 42 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINI 42 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecC
Confidence 578999999999998999999999999999887653
No 486
>PRK07411 hypothetical protein; Validated
Probab=92.43 E-value=0.19 Score=49.35 Aligned_cols=34 Identities=26% Similarity=0.493 Sum_probs=30.0
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEc
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVH 198 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~ 198 (299)
.|+.++|+|||.|+. |-+++..|+..|. ++++++
T Consensus 35 ~L~~~~VlivG~GGl-G~~va~~La~~Gvg~l~lvD 69 (390)
T PRK07411 35 RLKAASVLCIGTGGL-GSPLLLYLAAAGIGRIGIVD 69 (390)
T ss_pred HHhcCcEEEECCCHH-HHHHHHHHHHcCCCEEEEEC
Confidence 357789999999995 9999999999996 788886
No 487
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.42 E-value=0.18 Score=46.23 Aligned_cols=36 Identities=17% Similarity=0.359 Sum_probs=30.8
Q ss_pred cCCcEEEEEcCCc--cchHHHHHHHhhCCCeEEEEcCC
Q 022295 165 IKGKRAVVVGRSN--IVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 165 l~gk~vvViG~s~--~vG~pla~lL~~~gatVtv~~~~ 200 (299)
++||.++|.|+|. -+|+.+|..|+++|++|.++.++
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~ 41 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN 41 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence 6799999999873 35999999999999999887654
No 488
>PRK07791 short chain dehydrogenase; Provisional
Probab=92.41 E-value=0.17 Score=46.85 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=32.1
Q ss_pred cCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS 199 (299)
Q Consensus 165 l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~ 199 (299)
++||.++|.|++.-+|+.++..|+++|++|.++.+
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~ 38 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDI 38 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeC
Confidence 68999999999999999999999999999988754
No 489
>PRK07831 short chain dehydrogenase; Provisional
Probab=92.41 E-value=0.19 Score=45.29 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=31.2
Q ss_pred CcCCcEEEEEcCCc-cchHHHHHHHhhCCCeEEEEcCC
Q 022295 164 TIKGKRAVVVGRSN-IVGLPVSLLLLKADATVTIVHSH 200 (299)
Q Consensus 164 ~l~gk~vvViG~s~-~vG~pla~lL~~~gatVtv~~~~ 200 (299)
.++||+++|.|.++ -+|+.++..|+++|++|+++.++
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~ 51 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIH 51 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCC
Confidence 35789999999853 36999999999999999988654
No 490
>KOG1504 consensus Ornithine carbamoyltransferase OTC/ARG3 [Amino acid transport and metabolism]
Probab=92.40 E-value=0.3 Score=45.56 Aligned_cols=102 Identities=15% Similarity=0.192 Sum_probs=69.6
Q ss_pred HHccCCccccCCCCCcccccccccCCCCCccccCCHHH-HHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeE
Q 022295 116 VLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKG-CLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATV 194 (299)
Q Consensus 116 i~~~i~p~KDVDg~~~~n~g~l~~g~~~~~~~PcT~~a-v~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatV 194 (299)
|+..+.-..|++.+.-...--+..| ..+.|.||-+.| .+.+.|++|-.++|-+++=||-|+.|=-.+..+.+.-|.++
T Consensus 139 I~ARV~khsDi~tlak~sSvPiINg-L~D~~HPlQ~laD~LTi~E~f~ks~~glkvawiGD~NNvlhs~mia~ak~gih~ 217 (346)
T KOG1504|consen 139 IMARVNKHSDILTLAKYSSVPIING-LCDHFHPLQILADLLTIIEHFGKSVEGLKVAWIGDGNNVLHSWMIAAAKFGIHF 217 (346)
T ss_pred HHHHHhhhhhHHHHhhccCCceecc-cccccChHHHHHHHHHHHHHHhccccccEEEEEccccHHHHHHHHHhhhcceEE
Confidence 3334444555555543333334434 467799999988 78888999999999999999999887666555555556665
Q ss_pred EEEcCC-------------------------CCChhhhccCCcEEEEec
Q 022295 195 TIVHSH-------------------------TTDPESIVREADIVIAAA 218 (299)
Q Consensus 195 tv~~~~-------------------------t~~l~~~~~~ADIVIsa~ 218 (299)
.+..-+ |.|-.++...|||+||-|
T Consensus 218 s~atPkg~e~d~div~~akq~a~eNgsk~eltnDp~eA~~~anvlvtDt 266 (346)
T KOG1504|consen 218 SCATPKGYEPDKDIVSKAKQAAEENGSKFELTNDPLEAVIGANVLVTDT 266 (346)
T ss_pred EecCCCCCCcchHHHHHHHHHHHhcCCEEEEecChHHhhcCCcEEEEeh
Confidence 544311 335568889999999765
No 491
>PLN02740 Alcohol dehydrogenase-like
Probab=92.38 E-value=0.32 Score=46.91 Aligned_cols=94 Identities=16% Similarity=0.192 Sum_probs=58.2
Q ss_pred ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCC-eEEEEcCCC-------------------C--Ch
Q 022295 147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADA-TVTIVHSHT-------------------T--DP 204 (299)
Q Consensus 147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~~t-------------------~--~l 204 (299)
++|.....+..+.+..---.|.+|+|+|.|. +|..+++++...|+ .|+.+.+.. . ++
T Consensus 179 l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~-vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~ 257 (381)
T PLN02740 179 LSCGVSTGVGAAWNTANVQAGSSVAIFGLGA-VGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPV 257 (381)
T ss_pred hcccchhhHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchH
Confidence 4443333333332222234699999999755 69999999999998 577664321 0 12
Q ss_pred hhhc----c-CCcEEEEecCCCCcCCC--CccCCC-eEEEEeecc
Q 022295 205 ESIV----R-EADIVIAAAGQAMMIKG--SWIKPG-AAVIDVGTN 241 (299)
Q Consensus 205 ~~~~----~-~ADIVIsa~g~p~~i~~--~~vk~g-avVIDvg~~ 241 (299)
.+.+ . .+|+||.++|.+..+.. .++++| ..++-+|..
T Consensus 258 ~~~v~~~~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~ 302 (381)
T PLN02740 258 HERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIH 302 (381)
T ss_pred HHHHHHHhCCCCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccC
Confidence 2221 1 48999999998765432 456664 566667764
No 492
>PRK12743 oxidoreductase; Provisional
Probab=92.35 E-value=0.21 Score=44.94 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=30.3
Q ss_pred CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcC
Q 022295 167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS 199 (299)
Q Consensus 167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~ 199 (299)
+|+++|.|+++-+|+.++..|+++|++|.++.+
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~ 34 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWH 34 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 689999999999999999999999999988854
No 493
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=92.34 E-value=0.43 Score=44.55 Aligned_cols=95 Identities=16% Similarity=0.207 Sum_probs=61.5
Q ss_pred ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCCC------------------------
Q 022295 147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT------------------------ 202 (299)
Q Consensus 147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~------------------------ 202 (299)
+||.....+..+.....--.|.+++|.|.++.+|..+++++...|++|++..+...
T Consensus 127 ~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 206 (341)
T cd08290 127 LSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLTEEELR 206 (341)
T ss_pred hhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccc
Confidence 34544445555544433347899999998778899999999999998665543221
Q ss_pred --Chhhhcc-----CCcEEEEecCCCCcC-CCCccCCCeEEEEeecc
Q 022295 203 --DPESIVR-----EADIVIAAAGQAMMI-KGSWIKPGAAVIDVGTN 241 (299)
Q Consensus 203 --~l~~~~~-----~ADIVIsa~g~p~~i-~~~~vk~gavVIDvg~~ 241 (299)
+..+.++ ..|+++.++|.+.+. -..+++++..++++|..
T Consensus 207 ~~~~~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~ 253 (341)
T cd08290 207 SLLATELLKSAPGGRPKLALNCVGGKSATELARLLSPGGTMVTYGGM 253 (341)
T ss_pred cccHHHHHHHHcCCCceEEEECcCcHhHHHHHHHhCCCCEEEEEecc
Confidence 1111111 368888888865432 23557788889998853
No 494
>PRK08177 short chain dehydrogenase; Provisional
Probab=92.33 E-value=0.25 Score=43.62 Aligned_cols=34 Identities=26% Similarity=0.286 Sum_probs=30.5
Q ss_pred cEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT 201 (299)
Q Consensus 168 k~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t 201 (299)
|+++|.|+++.+|+.++..|+++|++|+++.++.
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~ 35 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGP 35 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCC
Confidence 6799999999999999999999999999887653
No 495
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=92.33 E-value=0.4 Score=45.72 Aligned_cols=52 Identities=19% Similarity=0.020 Sum_probs=39.1
Q ss_pred ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEc
Q 022295 147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVH 198 (299)
Q Consensus 147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~ 198 (299)
+||.....+..|.+....-.|.+|+|.|+++.||..+++++...|++|+.+.
T Consensus 139 l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~ 190 (348)
T PLN03154 139 LGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSA 190 (348)
T ss_pred cccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEc
Confidence 4555555666665444345799999999977789999999999999877654
No 496
>PRK06128 oxidoreductase; Provisional
Probab=92.28 E-value=0.22 Score=46.33 Aligned_cols=35 Identities=14% Similarity=0.429 Sum_probs=31.8
Q ss_pred CcCCcEEEEEcCCccchHHHHHHHhhCCCeEEEEc
Q 022295 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVH 198 (299)
Q Consensus 164 ~l~gk~vvViG~s~~vG~pla~lL~~~gatVtv~~ 198 (299)
.++||+++|.|+++-+|+.++..|+++|++|.++.
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~ 86 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNY 86 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEe
Confidence 37899999999999999999999999999988764
No 497
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=92.28 E-value=0.27 Score=44.57 Aligned_cols=52 Identities=25% Similarity=0.381 Sum_probs=41.4
Q ss_pred EEEEcCCccchHHHHHHHhhCCCeEEEEcCCCCC----------------hhhhccCCcEEEEecCCC
Q 022295 170 AVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD----------------PESIVREADIVIAAAGQA 221 (299)
Q Consensus 170 vvViG~s~~vG~pla~lL~~~gatVtv~~~~t~~----------------l~~~~~~ADIVIsa~g~p 221 (299)
|+|.|++|.+|..++..|+++|.+|+...++... +.+.+...|+||..+|.+
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~~~ 68 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAGEP 68 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCCCC
Confidence 5899999999999999999999999988764321 224567799999888754
No 498
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=92.28 E-value=0.19 Score=48.54 Aligned_cols=83 Identities=13% Similarity=0.092 Sum_probs=49.4
Q ss_pred ccCCHHHHHHHHHhhCCCcCCcEEEEEcCCccc-hHHHHHHHhhCCCeEEEEcCCCCChhhhccCCcEEEEecCCCC-c-
Q 022295 147 LPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIV-GLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAM-M- 223 (299)
Q Consensus 147 ~PcT~~av~~ll~~~~~~l~gk~vvViG~s~~v-G~pla~lL~~~gatVtv~~~~t~~l~~~~~~ADIVIsa~g~p~-~- 223 (299)
.|-...+....|.+. |.+|++..++... -......+...|++++ .+..+..++||+||.+++.+. .
T Consensus 28 ~~~gG~~MA~~La~a-----G~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~a------sd~~eaa~~ADvVIlaVP~~~~v~ 96 (342)
T PRK12557 28 PPYGGSRMAIEFAEA-----GHDVVLAEPNRSILSEELWKKVEDAGVKVV------SDDAEAAKHGEIHILFTPFGKKTV 96 (342)
T ss_pred CCcCHHHHHHHHHhC-----CCeEEEEECCHHHhhHHHHHHHHHCCCEEe------CCHHHHHhCCCEEEEECCCcHHHH
Confidence 344556666555544 3467777765531 0112223445665432 245577899999999998655 1
Q ss_pred --CC--CCccCCCeEEEEeec
Q 022295 224 --IK--GSWIKPGAAVIDVGT 240 (299)
Q Consensus 224 --i~--~~~vk~gavVIDvg~ 240 (299)
+. .+.+++|++|||++.
T Consensus 97 ~Vl~~L~~~L~~g~IVId~ST 117 (342)
T PRK12557 97 EIAKNILPHLPENAVICNTCT 117 (342)
T ss_pred HHHHHHHhhCCCCCEEEEecC
Confidence 11 244688999999875
No 499
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=92.25 E-value=0.16 Score=42.18 Aligned_cols=30 Identities=23% Similarity=0.501 Sum_probs=25.7
Q ss_pred EEEEEcCCccchHHHHHHHhhCCC-eEEEEcC
Q 022295 169 RAVVVGRSNIVGLPVSLLLLKADA-TVTIVHS 199 (299)
Q Consensus 169 ~vvViG~s~~vG~pla~lL~~~ga-tVtv~~~ 199 (299)
+|+|+|.|++ |..++..|...|. ++++++.
T Consensus 1 ~VliiG~Ggl-Gs~ia~~L~~~Gv~~i~ivD~ 31 (143)
T cd01483 1 RVLLVGLGGL-GSEIALNLARSGVGKITLIDF 31 (143)
T ss_pred CEEEECCCHH-HHHHHHHHHHCCCCEEEEEcC
Confidence 5899999885 9999999999997 7888863
No 500
>PRK06483 dihydromonapterin reductase; Provisional
Probab=92.24 E-value=0.2 Score=44.36 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=31.4
Q ss_pred CcEEEEEcCCccchHHHHHHHhhCCCeEEEEcCCC
Q 022295 167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT 201 (299)
Q Consensus 167 gk~vvViG~s~~vG~pla~lL~~~gatVtv~~~~t 201 (299)
+|+++|.|+++-+|+.++..|+++|++|+++.++.
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 36 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTH 36 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc
Confidence 57899999998899999999999999999887654
Done!