RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 022295
(299 letters)
>gnl|CDD|178131 PLN02516, PLN02516, methylenetetrahydrofolate dehydrogenase
(NADP+).
Length = 299
Score = 551 bits (1420), Expect = 0.0
Identities = 257/298 (86%), Positives = 274/298 (91%)
Query: 1 MAAPSDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMK 60
MA+PSD A IIDGKA+A+ IRSEIAEEV LSEK+GKVPGLAVVIVG RKDSQ+YV+MK
Sbjct: 1 MASPSDHVAQIIDGKAIAKAIRSEIAEEVAQLSEKHGKVPGLAVVIVGSRKDSQTYVNMK 60
Query: 61 RKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEI 120
RKACAEVGIKSFD+DLPE +SEAELISKVHELN PDVHGILVQLPLPKHINEEK+L EI
Sbjct: 61 RKACAEVGIKSFDVDLPENISEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEI 120
Query: 121 SLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVG 180
SLEKDVDGFHPLNIGKLAMKGR+PLFLPCTPKGCLELL RSG+ IKGK+AVVVGRSNIVG
Sbjct: 121 SLEKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVG 180
Query: 181 LPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGT 240
LPVSLLLLKADATVT+VHS T DPESIVREADIVIAAAGQAMMIKG WIKPGAAVIDVGT
Sbjct: 181 LPVSLLLLKADATVTVVHSRTPDPESIVREADIVIAAAGQAMMIKGDWIKPGAAVIDVGT 240
Query: 241 NAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298
NAV D +KKSGYRLVGDVDF E KVAG +TPVPGGVGPMTVAMLL+NT+DGAKRV
Sbjct: 241 NAVSDPSKKSGYRLVGDVDFAEVSKVAGWITPVPGGVGPMTVAMLLKNTVDGAKRVFA 298
>gnl|CDD|215332 PLN02616, PLN02616, tetrahydrofolate dehydrogenase/cyclohydrolase,
putative.
Length = 364
Score = 405 bits (1042), Expect = e-142
Identities = 188/292 (64%), Positives = 229/292 (78%)
Query: 5 SDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKAC 64
S+ A +IDGKAVA+ IR EI EV + E G VPGLAV++VG RKDS +YV K+KAC
Sbjct: 69 SEGGAKVIDGKAVAKKIRDEITIEVSRMKESIGVVPGLAVILVGDRKDSATYVRNKKKAC 128
Query: 65 AEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEK 124
VGI SF++ LPE +E E++ + N P VHGILVQLPLP H++E+ +L +S+EK
Sbjct: 129 DSVGINSFEVRLPEDSTEQEVLKFISGFNNDPSVHGILVQLPLPSHMDEQNILNAVSIEK 188
Query: 125 DVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVS 184
DVDGFHPLNIG+LAM+GR+PLF+PCTPKGC+ELL R V IKGKRAVV+GRSNIVG+P +
Sbjct: 189 DVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAA 248
Query: 185 LLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVD 244
LLL + DATV+IVHS T +PE I READI+I+A GQ M++GSWIKPGA VIDVG N V+
Sbjct: 249 LLLQREDATVSIVHSRTKNPEEITREADIIISAVGQPNMVRGSWIKPGAVVIDVGINPVE 308
Query: 245 DSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRV 296
D++ GYRLVGDV + EACKVA VTPVPGGVGPMT+AMLL NTL AKR+
Sbjct: 309 DASSPRGYRLVGDVCYEEACKVASAVTPVPGGVGPMTIAMLLSNTLTSAKRI 360
>gnl|CDD|178485 PLN02897, PLN02897, tetrahydrofolate dehydrogenase/cyclohydrolase,
putative.
Length = 345
Score = 400 bits (1028), Expect = e-140
Identities = 181/292 (61%), Positives = 229/292 (78%)
Query: 5 SDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKAC 64
++QK +IDG +A+ IR++IA EVR + + GKVPGLAVV+VG ++DSQ+YV K KAC
Sbjct: 52 TEQKTVVIDGNVIAEEIRTKIASEVRKMKKAVGKVPGLAVVLVGQQRDSQTYVRNKIKAC 111
Query: 65 AEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEK 124
E GIKS +LPE +E +++S + + N +HGILVQLPLP+H++E K+L + LEK
Sbjct: 112 EETGIKSLLAELPEDCTEGQILSALRKFNEDTSIHGILVQLPLPQHLDESKILNMVRLEK 171
Query: 125 DVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVS 184
DVDGFHPLN+G LAM+GR+PLF+ CTPKGC+ELL RSGV I GK AVV+GRSNIVGLP+S
Sbjct: 172 DVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMS 231
Query: 185 LLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVD 244
LLL + DATV+ VH+ T DPE I R+ADIVIAAAG +++GSW+KPGA VIDVGT V+
Sbjct: 232 LLLQRHDATVSTVHAFTKDPEQITRKADIVIAAAGIPNLVRGSWLKPGAVVIDVGTTPVE 291
Query: 245 DSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRV 296
DS+ + GYRLVGDV + EA VA +TPVPGGVGPMT+ MLL NTLD AKR+
Sbjct: 292 DSSCEFGYRLVGDVCYEEALGVASAITPVPGGVGPMTITMLLCNTLDAAKRI 343
>gnl|CDD|223268 COG0190, FolD, 5,10-methylene-tetrahydrofolate
dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
[Coenzyme metabolism].
Length = 283
Score = 386 bits (995), Expect = e-136
Identities = 162/287 (56%), Positives = 200/287 (69%), Gaps = 8/287 (2%)
Query: 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGI 69
IIDGKA+A+ IR E+ E+V L K G PGLAV++VG SQ YV K+KA E+GI
Sbjct: 1 MIIDGKALAEKIREELKEKVEALKAKGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGI 60
Query: 70 KSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGF 129
S DLPE ++E EL++ + ELN P+V GILVQLPLPKH++E+K+L I EKDVDGF
Sbjct: 61 ASELYDLPEDITEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGF 120
Query: 130 HPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK 189
HP N+GKLA +P FLPCTP G + LL+ G+ ++GK VVVGRSNIVG P++LLLL
Sbjct: 121 HPYNLGKLA--QGEPGFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLN 178
Query: 190 ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK 249
A+ATVT+ HS T D SI + ADIV+ A G+ IK +KPGA VIDVG N V+D
Sbjct: 179 ANATVTVCHSRTKDLASITKNADIVVVAVGKPHFIKADMVKPGAVVIDVGINRVND---- 234
Query: 250 SGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRV 296
+LVGDVDF + A +TPVPGGVGPMTVAMLL NTL A+R
Sbjct: 235 --GKLVGDVDFDSVKEKASAITPVPGGVGPMTVAMLLENTLKAAERQ 279
>gnl|CDD|236760 PRK10792, PRK10792, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 285
Score = 367 bits (945), Expect = e-129
Identities = 155/285 (54%), Positives = 189/285 (66%), Gaps = 8/285 (2%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
A IIDGK +AQ +RSE+A++V+ + PGLAVV+VG SQ YV+ KRKAC EVG
Sbjct: 3 AKIIDGKTIAQQVRSEVAQKVQARVAAGLRAPGLAVVLVGSDPASQVYVASKRKACEEVG 62
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
S DLPE SEAEL++ + ELN P + GILVQLPLP HI+ KVL I +KDVDG
Sbjct: 63 FVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHPDKDVDG 122
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
FHP N+G+LA R PL PCTP+G + LL+R G+ G AVVVG SNIVG P+SL LL
Sbjct: 123 FHPYNVGRLAQ--RIPLLRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELL 180
Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
A TVT+ H T + VR AD+++ A G+ I G WIKPGA VIDVG N ++D
Sbjct: 181 LAGCTVTVCHRFTKNLRHHVRNADLLVVAVGKPGFIPGEWIKPGAIVIDVGINRLEDG-- 238
Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGA 293
+LVGDV+F A + A +TPVPGGVGPMTVA LL NTL
Sbjct: 239 ----KLVGDVEFETAAERASWITPVPGGVGPMTVATLLENTLQAC 279
>gnl|CDD|184558 PRK14188, PRK14188, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 296
Score = 363 bits (935), Expect = e-127
Identities = 156/288 (54%), Positives = 193/288 (67%), Gaps = 3/288 (1%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
ATIIDGKA A +R+ +A EV L +G PGLAVV+VG SQ YV K K E G
Sbjct: 2 ATIIDGKAFAADVRATVAAEVARLKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAG 61
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
+ SF+ LP S+AEL++ + LN P +HGILVQLPLPKH++ E V+ I EKDVDG
Sbjct: 62 MASFEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPEKDVDG 121
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
H +N G+LA + +PCTP GC+ LL+R + G AVV+GRSN+VG P++ LLL
Sbjct: 122 LHVVNAGRLA--TGETALVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLL 179
Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
A+ATVTI HS T D ++ R ADI++AA G+ M+KG WIKPGA VIDVG N + K
Sbjct: 180 AANATVTIAHSRTRDLPAVCRRADILVAAVGRPEMVKGDWIKPGATVIDVGINRIPAPEK 239
Query: 249 KSG-YRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
G RLVGDV F EA +VAG +TPVPGGVGPMT+A LL NTL A R
Sbjct: 240 GEGKTRLVGDVAFAEAAEVAGAITPVPGGVGPMTIACLLANTLTAACR 287
>gnl|CDD|184560 PRK14190, PRK14190, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 344 bits (885), Expect = e-120
Identities = 146/287 (50%), Positives = 190/287 (66%), Gaps = 9/287 (3%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
A IIDGK VA+ R ++ EEV L E+ G VPGLAV++VG S SYV K+KA +VG
Sbjct: 3 AVIIDGKEVAKEKREQLKEEVVKLKEQ-GIVPGLAVILVGDDPASHSYVRGKKKAAEKVG 61
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
I S + P ++E EL++ + LN P ++GILVQLPLPKHI+E+ V+ IS EKDVDG
Sbjct: 62 IYSELYEFPADITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPEKDVDG 121
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
FHP+N+G++ + FLPCTP G LELLK + I GK VVVGRSNIVG PV LLL
Sbjct: 122 FHPINVGRMMLG--QDTFLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLL 179
Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
+ATVT HS T + + ++ADI+I A G+ +I +K GA VIDVG N +++
Sbjct: 180 NENATVTYCHSKTKNLAELTKQADILIVAVGKPKLITADMVKEGAVVIDVGVNRLENG-- 237
Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
+L GDVDF + A +TPVPGGVGPMT+ ML+ NT++ AKR
Sbjct: 238 ----KLCGDVDFDNVKEKASYITPVPGGVGPMTITMLMHNTVELAKR 280
>gnl|CDD|184559 PRK14189, PRK14189, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 285
Score = 337 bits (866), Expect = e-117
Identities = 147/287 (51%), Positives = 195/287 (67%), Gaps = 9/287 (3%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
A +IDG A+++ +R+E A+ L+ + G PGLAV++VG SQ YV K KAC + G
Sbjct: 3 AQLIDGNALSKQLRAEAAQRAAALTAR-GHQPGLAVILVGDNPASQVYVRNKVKACEDNG 61
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
S P +SEAEL++++ ELN P +HGILVQLPLPKHI+ KV+ I+ EKDVDG
Sbjct: 62 FHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPEKDVDG 121
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
FH N G L M G+ PLF PCTP G +++L+ G+ ++G AVV+GRSNIVG P+++LLL
Sbjct: 122 FHVANAGAL-MTGQ-PLFRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLL 179
Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
+A ATVTI HS T D + R+ADIV+AA G+ ++ +KPGA VIDVG N D
Sbjct: 180 QAGATVTICHSKTRDLAAHTRQADIVVAAVGKRNVLTADMVKPGATVIDVGMNRDDAG-- 237
Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
+L GDVDF +VAG +TPVPGGVGPMT+ MLL NT++ A+R
Sbjct: 238 ----KLCGDVDFAGVKEVAGYITPVPGGVGPMTITMLLVNTIEAAER 280
>gnl|CDD|172662 PRK14174, PRK14174, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 295
Score = 322 bits (828), Expect = e-111
Identities = 156/294 (53%), Positives = 193/294 (65%), Gaps = 4/294 (1%)
Query: 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGI 69
IIDGK V+ +++E+ V K GKVPGL V+IVG SQ YV K K+C E+G+
Sbjct: 2 LIIDGKKVSLDLKNELKTRVEAYRAKTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGM 61
Query: 70 KSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGF 129
S I+LP +E L+ K+ +LN PDVHGILVQ PLPK I+E V I KDVDGF
Sbjct: 62 NSTVIELPADTTEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPAKDVDGF 121
Query: 130 HPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK 189
HP N+G+L M D F+ CTP G LELL R + KGK VVVGRSNIVG P++ L+L+
Sbjct: 122 HPENLGRLVMGHLDKCFVSCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQ 181
Query: 190 ----ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD 245
++ TVTI HS T D S R+ADI+IAA G+A I +KPGA VIDVG N ++D
Sbjct: 182 KLKESNCTVTICHSATKDIPSYTRQADILIAAIGKARFITADMVKPGAVVIDVGINRIED 241
Query: 246 STKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIEL 299
+ KSGYRLVGDVD+ A +TPVPGGVGPMT+AMLL+NTL +RV L
Sbjct: 242 PSTKSGYRLVGDVDYEGVSAKASAITPVPGGVGPMTIAMLLKNTLQSFERVNNL 295
>gnl|CDD|237636 PRK14186, PRK14186, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 297
Score = 315 bits (810), Expect = e-108
Identities = 145/287 (50%), Positives = 188/287 (65%), Gaps = 4/287 (1%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
A I+DGKA+A I + ++ K G+ PGLAV+ VG S YV K KACA VG
Sbjct: 2 ALILDGKALAAEIEQRLQAQIESNLPKAGRPPGLAVLRVGDDPASAVYVRNKEKACARVG 61
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
I SF LP S+AE+ + + +LN V GIL+QLPLPKH++E +L I +KD DG
Sbjct: 62 IASFGKHLPADTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPDKDADG 121
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
HPLN+G+L +KG +P CTP G + LL+ + I GK+AVVVGRS +VG P++L+LL
Sbjct: 122 LHPLNLGRL-VKG-EPGLRSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLL 179
Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
A+ATVTI HS T D SI READI++AAAG+ +I +KPGA V+DVG + + S
Sbjct: 180 AANATVTIAHSRTQDLASITREADILVAAAGRPNLIGAEMVKPGAVVVDVGIHRLPSSDG 239
Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
K+ RL GDVDF E VA +TPVPGGVGPMTV MLL NT+ ++
Sbjct: 240 KT--RLCGDVDFEEVEPVAAAITPVPGGVGPMTVTMLLVNTVLSWQK 284
>gnl|CDD|172679 PRK14191, PRK14191, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 285
Score = 310 bits (797), Expect = e-106
Identities = 134/289 (46%), Positives = 184/289 (63%), Gaps = 8/289 (2%)
Query: 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGI 69
++DGKA++ I ++ ++++L+ + GK P LAV++VG SQ+YV+MK KAC VG+
Sbjct: 2 VLLDGKALSYKIEKDLKNKIQILTAQTGKRPKLAVILVGKDPASQTYVNMKIKACERVGM 61
Query: 70 KSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGF 129
S L E +EAEL+S + +LN ++ GILVQLPLP+HI+ + VL I KDVDGF
Sbjct: 62 DSDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGF 121
Query: 130 HPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK 189
HPLNIGKL D F+P TP G + LLK + IKGK V++G SNIVG P+++L+L
Sbjct: 122 HPLNIGKLC-SQLDG-FVPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLN 179
Query: 190 ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK 249
A A+V++ H T D + ADIV G+ +IK S +K GA V+D+G N ++D
Sbjct: 180 AGASVSVCHILTKDLSFYTQNADIVCVGVGKPDLIKASMVKKGAVVVDIGINRLNDG--- 236
Query: 250 SGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298
RLVGDVDF A +TPVPGGVGPMT+ LL NTL A++
Sbjct: 237 ---RLVGDVDFENVAPKASFITPVPGGVGPMTIVSLLENTLIAAEKRQR 282
>gnl|CDD|237634 PRK14179, PRK14179, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 308 bits (791), Expect = e-105
Identities = 141/287 (49%), Positives = 189/287 (65%), Gaps = 8/287 (2%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
IIDGKA+AQ +++E+AE+V L E+ G VPGL V++VG SQ YV K ++ G
Sbjct: 2 TEIIDGKALAQKMQAELAEKVAKLKEEKGIVPGLVVILVGDNPASQVYVRNKERSALAAG 61
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
KS + LPE +S+ EL+ + N P HGILVQLPLPKHINEEK+L I +KDVDG
Sbjct: 62 FKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPKKDVDG 121
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
FHP+N G L GR P+ +PCTP G +E+ + V ++GK AVV+GRSNIVG P++ LLL
Sbjct: 122 FHPMNTGHL-WSGR-PVMIPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLL 179
Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
+ATVT+ HS T + + R+ADI++ A G+ + ++K GA VIDVG N ++
Sbjct: 180 DKNATVTLTHSRTRNLAEVARKADILVVAIGRGHFVTKEFVKEGAVVIDVGMNRDENG-- 237
Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
+L+GDVDF E +VA +TPVPGGVGPMT+ ML+ T A R
Sbjct: 238 ----KLIGDVDFDEVAEVASYITPVPGGVGPMTITMLMEQTYQAALR 280
>gnl|CDD|184549 PRK14167, PRK14167, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 297
Score = 302 bits (775), Expect = e-103
Identities = 145/289 (50%), Positives = 187/289 (64%), Gaps = 8/289 (2%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
IIDG AVA IR ++ + + L + G PGLA V++ S++YVSMK++ C EVG
Sbjct: 2 TEIIDGNAVAAQIRDDLTDAIETLEDA-GVTPGLATVLMSDDPASETYVSMKQRDCEEVG 60
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
I++ D+++ EL + ELN DVHGILVQ+P+P H+++ +VL I KDVDG
Sbjct: 61 IEAIDVEIDPDAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPAKDVDG 120
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVS-LLL 187
FHP N+G+L D F PCTP G +LL +GV +G VVVGRS+IVG P++ LL+
Sbjct: 121 FHPENVGRLV--AGDARFKPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLI 178
Query: 188 LKAD---ATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVD 244
KAD ATVT+ HS T D + R ADIV+AAAG +I GS + GA VIDVG N VD
Sbjct: 179 QKADGGNATVTVCHSRTDDLAAKTRRADIVVAAAGVPELIDGSMLSEGATVIDVGINRVD 238
Query: 245 DSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGA 293
T+K GY LVGDV+F A + A +TPVPGGVGPMT AMLL NT+ A
Sbjct: 239 ADTEK-GYELVGDVEFESAKEKASAITPVPGGVGPMTRAMLLYNTVKAA 286
>gnl|CDD|184556 PRK14185, PRK14185, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 293
Score = 299 bits (766), Expect = e-101
Identities = 144/292 (49%), Positives = 192/292 (65%), Gaps = 6/292 (2%)
Query: 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGI 69
+IDGKA++ I+ EIA EV + K GK P LA ++VG S++YV+ K KAC E G
Sbjct: 2 QLIDGKAISAQIKQEIAAEVAEIVAKGGKRPHLAAILVGHDGGSETYVANKVKACEECGF 61
Query: 70 KSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGF 129
KS I V+E EL++KV ELN DV G +VQLPLPKHI+E+KV+ I KDVDGF
Sbjct: 62 KSSLIRYESDVTEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYRKDVDGF 121
Query: 130 HPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK 189
HP+N+G++++ P F+ TP G LELLKR + GK+ VV+GRSNIVG P++ L+++
Sbjct: 122 HPINVGRMSIG--LPCFVSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQ 179
Query: 190 ----ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD 245
D TVT+ HS + + + EADI+IAA GQ +K +K GA VIDVGT V D
Sbjct: 180 KAYPGDCTVTVCHSRSKNLKKECLEADIIIAALGQPEFVKADMVKEGAVVIDVGTTRVPD 239
Query: 246 STKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI 297
+T+KSG++L GDV F E +TPVPGGVGPMT+ L++NTL K+ I
Sbjct: 240 ATRKSGFKLTGDVKFDEVAPKCSYITPVPGGVGPMTIVSLMKNTLLAGKKAI 291
>gnl|CDD|237637 PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 295 bits (757), Expect = e-100
Identities = 136/289 (47%), Positives = 179/289 (61%), Gaps = 12/289 (4%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
A I+DGKA A I++++AE V L EK G PGL V+VG SQ+YV K + CAEVG
Sbjct: 3 AIILDGKATADEIKADLAERVAALKEK-GITPGLGTVLVGDDPGSQAYVRGKHRDCAEVG 61
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
I S DLP ++ EL + + ELN P G +VQLPLPKH++E VL I KD DG
Sbjct: 62 ITSIRRDLPADATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPAKDADG 121
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
HP N+G+L + P LPCTP+G + LL+R V + G VV+GR VG P+ LLL
Sbjct: 122 LHPTNLGRLVLNEPAP--LPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLT 179
Query: 189 K--ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDS 246
+ +ATVT+ H+ T D + R ADI++AAAG A ++ +KPGAAV+DVG + D
Sbjct: 180 RRSENATVTLCHTGTRDLAAHTRRADIIVAAAGVAHLVTADMVKPGAAVLDVGVSRAGD- 238
Query: 247 TKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
+LVGDV + +VAG V+P PGGVGPMT A LL N ++ A+R
Sbjct: 239 -----GKLVGDVH-PDVWEVAGAVSPNPGGVGPMTRAFLLTNVVERAER 281
>gnl|CDD|172682 PRK14194, PRK14194, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 301
Score = 294 bits (755), Expect = e-100
Identities = 146/286 (51%), Positives = 194/286 (67%), Gaps = 6/286 (2%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
A +IDGKA A + +++ E+VR L G P LAV++VG SQ YV K E G
Sbjct: 4 AKLIDGKAAAARVLAQVREDVRTLKAA-GIEPALAVILVGNDPASQVYVRNKILRAEEAG 62
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
I+S + LP S+A L++ + ELN P V+GIL+QLPLP HI+E +VL I+ KDVDG
Sbjct: 63 IRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPLKDVDG 122
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
FH N+G L+ +GRD L PCTP GCL LL+ + + GK AVV+GRSNIVG P++ LLL
Sbjct: 123 FHSENVGGLS-QGRDVL-TPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLL 180
Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
+A +VT+VHS +TD +++ R+ADIV+AA G+ +I W+KPGA VIDVG N +DD +
Sbjct: 181 QAHCSVTVVHSRSTDAKALCRQADIVVAAVGRPRLIDADWLKPGAVVIDVGINRIDDDGR 240
Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAK 294
RLVGDVDF A V +TPVPGGVGPMT+A L++NT+ A+
Sbjct: 241 S---RLVGDVDFDSALPVVSAITPVPGGVGPMTIAFLMKNTVTAAR 283
>gnl|CDD|237635 PRK14184, PRK14184, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 286
Score = 293 bits (752), Expect = 1e-99
Identities = 140/288 (48%), Positives = 181/288 (62%), Gaps = 13/288 (4%)
Query: 11 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70
++DGKA A TIR E+ EV L+ ++G+ PGLAV++VG SQ YV K +AC + GI
Sbjct: 3 LLDGKATAATIREELKTEVAALTARHGRAPGLAVILVGEDPASQVYVRNKERACEDAGIV 62
Query: 71 SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130
S LP ++ EL + ELN PD+ GIL+QLPLPK ++ ++ L I KDVDGFH
Sbjct: 63 SEAFRLPADTTQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELIDPAKDVDGFH 122
Query: 131 PLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK- 189
P N+G+LA+ P F PCTP G + LL+R G++ GK+AVVVGRSNIVG P++L+L
Sbjct: 123 PENMGRLALG--LPGFRPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAP 180
Query: 190 ---ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDS 246
A+ATVT+ HS T D READ + A G+ + +KPGA V+DVG N DD
Sbjct: 181 GKFANATVTVCHSRTPDLAEECREADFLFVAIGRPRFVTADMVKPGAVVVDVGINRTDDG 240
Query: 247 TKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAK 294
LVGD DF VA +TPVPGGVGPMT+A LL NT+ K
Sbjct: 241 -------LVGDCDFEGLSDVASAITPVPGGVGPMTIAQLLVNTVQSWK 281
>gnl|CDD|237633 PRK14168, PRK14168, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 297
Score = 288 bits (738), Expect = 3e-97
Identities = 145/290 (50%), Positives = 187/290 (64%), Gaps = 4/290 (1%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
A II G + + I EI EV L EKYGKVPGL ++VG S SYV++K K +G
Sbjct: 3 AKIIKGTEIREEILEEIRGEVAELKEKYGKVPGLVTILVGESPASLSYVTLKIKTAHRLG 62
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
+ ++E EL++ + + N +HGILVQLPLPKHINE+KVL I +KDVDG
Sbjct: 63 FHEIQDNQSVDITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPDKDVDG 122
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
FHP+N+G+L + G + FLPCTP G E+L RSGV G VVVGRSNIVG P++ ++
Sbjct: 123 FHPVNVGRLMIGGDEVKFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMT 182
Query: 189 K----ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVD 244
+ A+ATVTIVH+ + + + ADI+I AAG ++K WIKPGA VIDVG N V
Sbjct: 183 QKGPGANATVTIVHTRSKNLARHCQRADILIVAAGVPNLVKPEWIKPGATVIDVGVNRVG 242
Query: 245 DSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAK 294
+ L GDVDF ++AG +TPVPGGVGPMT+AML+RNTL AK
Sbjct: 243 TNESTGKAILSGDVDFDAVKEIAGKITPVPGGVGPMTIAMLMRNTLKSAK 292
>gnl|CDD|172675 PRK14187, PRK14187, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 294
Score = 285 bits (731), Expect = 3e-96
Identities = 134/285 (47%), Positives = 178/285 (62%), Gaps = 3/285 (1%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
IIDGK +A I +A + L ++ P L V++VG SQ YV K++ +G
Sbjct: 2 TNIIDGKKIANDITEILATCIDDLKRQHNLFPCLIVILVGDDPASQLYVRNKQRKAEMLG 61
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
++S I LP +SE+ LI K++ELN VHGILVQLP+P HI++ ++ I EKDVDG
Sbjct: 62 LRSETILLPSTISESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTIDPEKDVDG 121
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
FH N+G+L + +PCTPKGCL L+K + G AVV+GRSNIVG P++ LLL
Sbjct: 122 FHNENVGRLFTGQKKNCLIPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLL 181
Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
+ TVT VHS T D +ADI++AA G +K SWIK GA VIDVG N++++
Sbjct: 182 GENCTVTTVHSATRDLADYCSKADILVAAVGIPNFVKYSWIKKGAIVIDVGINSIEEGGV 241
Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGA 293
K + VGDVDF E K A +TPVPGGVGPMT+A L+ NT+ A
Sbjct: 242 K---KFVGDVDFAEVKKKASAITPVPGGVGPMTIAFLMVNTVIAA 283
>gnl|CDD|172658 PRK14170, PRK14170, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 281 bits (720), Expect = 8e-95
Identities = 157/289 (54%), Positives = 207/289 (71%), Gaps = 9/289 (3%)
Query: 11 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70
IIDGK +A+ I+ ++ EV L K GK PGLAVV+VG + S++YV K+K E G+K
Sbjct: 4 IIDGKKLAKEIQEKVTREVAELV-KEGKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMK 62
Query: 71 SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130
S I+LPE V+E +L+S V ELN +HGILVQLPLP+HI+EEKV+ IS +KDVDGFH
Sbjct: 63 SVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFH 122
Query: 131 PLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKA 190
P+N+G L + G+D F+PCTP G +EL+K +G I+GKRAVV+GRSNIVG PV+ LLL
Sbjct: 123 PVNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNE 180
Query: 191 DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKS 250
+ATVTI HS T D + +EADI++ A G A +K +IKPGA VIDVG + +++
Sbjct: 181 NATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKDYIKPGAIVIDVGMDRDENN---- 236
Query: 251 GYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIEL 299
+L GDVDF + + AG +TPVPGGVGPMT+ MLL NTL AKR+ ++
Sbjct: 237 --KLCGDVDFDDVVEEAGFITPVPGGVGPMTITMLLANTLKAAKRIWKM 283
>gnl|CDD|172666 PRK14178, PRK14178, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 279
Score = 280 bits (718), Expect = 1e-94
Identities = 144/285 (50%), Positives = 188/285 (65%), Gaps = 13/285 (4%)
Query: 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGI 69
I+DGKAV++ + EE+ + G P LA VIVG SQ YV MK +AC VGI
Sbjct: 1 MILDGKAVSEKRLELLKEEI----IESGLYPRLATVIVGDDPASQMYVRMKHRACERVGI 56
Query: 70 KSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGF 129
S I+LP + ++ ++ LN PD++GILVQLPLPK ++ E+V+ I EKDVDGF
Sbjct: 57 GSVGIELPGDATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPEKDVDGF 116
Query: 130 HPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK 189
HPLN+G+L + G P F PCTP G + LL ++I GKRAVVVGRS VG P++ LLL
Sbjct: 117 HPLNLGRL-VSGL-PGFAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLN 174
Query: 190 ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK 249
ADATVTI HS T + ++ +R+ADI+++AAG+A I +KPGA VIDVG N V+
Sbjct: 175 ADATVTICHSKTENLKAELRQADILVSAAGKAGFITPDMVKPGATVIDVGINQVNG---- 230
Query: 250 SGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAK 294
+L GDVDF ++AG +TPVPGGVGPMT+A L+ NT D AK
Sbjct: 231 ---KLCGDVDFDAVKEIAGAITPVPGGVGPMTIATLMENTFDAAK 272
>gnl|CDD|184555 PRK14183, PRK14183, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 281
Score = 276 bits (708), Expect = 5e-93
Identities = 139/285 (48%), Positives = 183/285 (64%), Gaps = 8/285 (2%)
Query: 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGI 69
I+DGKA++ I+ + +EV L VPGLAV++VG S +YV MK KAC VGI
Sbjct: 2 QILDGKALSDKIKENVKKEVDELKLVKNIVPGLAVILVGDDPASHTYVKMKAKACDRVGI 61
Query: 70 KSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGF 129
S ++P +S+ E++ + +N P++ GILVQLPLPKHI+ K+L I +KDVDGF
Sbjct: 62 YSITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPKKDVDGF 121
Query: 130 HPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK 189
HP N+G+L + G D F+PCTP G +ELL+ + +KGK VVG SNIVG P++ LLL
Sbjct: 122 HPYNVGRL-VTGLDG-FVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLN 179
Query: 190 ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK 249
A+ATV I H T D ++ ++ADIVI G+ +I +K GA VID+G N +D
Sbjct: 180 ANATVDICHIFTKDLKAHTKKADIVIVGVGKPNLITEDMVKEGAIVIDIGINRTEDG--- 236
Query: 250 SGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAK 294
RLVGDVDF K +TPVPGGVGPMT+AMLL NTL AK
Sbjct: 237 ---RLVGDVDFENVAKKCSYITPVPGGVGPMTIAMLLSNTLKAAK 278
>gnl|CDD|184553 PRK14176, PRK14176, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 287
Score = 275 bits (704), Expect = 3e-92
Identities = 127/294 (43%), Positives = 179/294 (60%), Gaps = 9/294 (3%)
Query: 4 PSDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKA 63
++ IIDGKA+A+ I +E+ V L G PGLA ++VG S+ YV +K KA
Sbjct: 3 DESYESRIIDGKALAKKIEAEVRSGVERLKSNRGITPGLATILVGDDPASKMYVRLKHKA 62
Query: 64 CAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLE 123
C VGI++ D LP ++ EL+ + LN DVHGIL+QLPLPKH++ ++ + I
Sbjct: 63 CERVGIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPA 122
Query: 124 KDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPV 183
KD DGFHP N+GKL M G D +PCTP G + L+ GV I+GK AV+VG SN+VG P+
Sbjct: 123 KDADGFHPYNMGKL-MIG-DEGLVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPM 180
Query: 184 SLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAV 243
+ +LL +ATV++ H T D + +ADI++ A G +IK +K GA + DVG
Sbjct: 181 AAMLLNRNATVSVCHVFTDDLKKYTLDADILVVATGVKHLIKADMVKEGAVIFDVGITKE 240
Query: 244 DDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI 297
+D GDVDF K A +TPVPGGVGP+T+AML+++ L A++ +
Sbjct: 241 EDKV-------YGDVDFENVIKKASLITPVPGGVGPLTIAMLMKHVLMCAEKSL 287
>gnl|CDD|172670 PRK14182, PRK14182, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 266 bits (680), Expect = 8e-89
Identities = 149/285 (52%), Positives = 190/285 (66%), Gaps = 8/285 (2%)
Query: 11 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70
+IDGK +A ++ E+A EVR L+ + G GL VV VG S YV KRK C EVGI
Sbjct: 3 LIDGKQIAAKVKGEVATEVRALAAR-GVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGIT 61
Query: 71 SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130
S + LP ++AEL++ + LN P VHGILVQLPLPKH++E VL IS KD DGFH
Sbjct: 62 SVEHHLPATTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAISPAKDADGFH 121
Query: 131 PLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKA 190
P N+G L++ G + PCTP G + +L + V KGKRA+VVGRSNIVG P++++LL+
Sbjct: 122 PFNVGALSI-GIAGVPRPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLER 180
Query: 191 DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKS 250
ATVTI HS T D V ADI++AA G+A ++KG+W+K GA VIDVG N + D
Sbjct: 181 HATVTIAHSRTADLAGEVGRADILVAAIGKAELVKGAWVKEGAVVIDVGMNRLADG---- 236
Query: 251 GYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
+LVGDV+F A A +TPVPGGVGPMT AMLL NT++ AKR
Sbjct: 237 --KLVGDVEFAAAAARASAITPVPGGVGPMTRAMLLVNTVELAKR 279
>gnl|CDD|172660 PRK14172, PRK14172, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 278
Score = 263 bits (673), Expect = 1e-87
Identities = 115/284 (40%), Positives = 173/284 (60%), Gaps = 9/284 (3%)
Query: 11 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70
II+GK VA I+ EI V E +P +A ++VG S Y++ + K +GI
Sbjct: 4 IINGKEVALKIKEEIKNFVEERKENGLSIPKIASILVGNDGGSIYYMNNQEKVANSLGID 63
Query: 71 SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130
I L E +SE +LI+++ ELN +VHGI++QLPLPKH++E+K+ +I KD+D
Sbjct: 64 FKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDANKDIDCLT 123
Query: 131 PLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKA 190
+++GK + FLPCTP + L+K + I+GK VV+GRSNIVG PV+ LLL
Sbjct: 124 FISVGKFYKG--EKCFLPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNE 181
Query: 191 DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKS 250
+ATVTI HS T + + + ++ADI++ A G+ I ++K GA VIDVGT++V+
Sbjct: 182 NATVTICHSKTKNLKEVCKKADILVVAIGRPKFIDEEYVKEGAIVIDVGTSSVNG----- 236
Query: 251 GYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAK 294
++ GDV+F + A +TPVPGGVG +T +L++N + K
Sbjct: 237 --KITGDVNFDKVIDKASYITPVPGGVGSLTTTLLIKNVCEALK 278
>gnl|CDD|184561 PRK14192, PRK14192, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 283
Score = 262 bits (671), Expect = 2e-87
Identities = 123/289 (42%), Positives = 180/289 (62%), Gaps = 9/289 (3%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
A ++DGKA+A+ I E++ V L K G+ P LA ++VG S +YV MK AC VG
Sbjct: 3 ALVLDGKALAKQIEEELSVRVEALKAKTGRTPILATILVGDDPASATYVRMKGNACRRVG 62
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
+ S ++LP++ + +L++K+ ELN PDVHGIL+Q P+P I+E ISL KDVDG
Sbjct: 63 MDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDG 122
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
L G++AM + + TP G + LLK + + GK AVVVGRS I+G P++++LL
Sbjct: 123 VTCLGFGRMAMG--EAAYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLL 180
Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
A+ATVTI HS T + +V++ADI++ A G+ +IK WIK GA V+D G + D
Sbjct: 181 NANATVTICHSRTQNLPELVKQADIIVGAVGKPELIKKDWIKQGAVVVDAGFHPRDGGG- 239
Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI 297
VGD++ ++A TPVPGGVGPMT+ L+R T++ A++ +
Sbjct: 240 ------VGDIELQGIEEIASAYTPVPGGVGPMTINTLIRQTVEAAEKAL 282
>gnl|CDD|184552 PRK14175, PRK14175, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 286
Score = 260 bits (666), Expect = 1e-86
Identities = 132/287 (45%), Positives = 197/287 (68%), Gaps = 9/287 (3%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
A I+DGK +A+ R + ++V L EK G P L+V++VG SQSYV K+KA ++G
Sbjct: 3 AKILDGKQIAKDYRQGLQDQVEALKEK-GFTPKLSVILVGNDGASQSYVRSKKKAAEKIG 61
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
+ S + L E +E E++++++ LN V GILVQ+PLPK ++E+K+L I+ EKDVDG
Sbjct: 62 MISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDG 121
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
FHP+NIGKL + + F+PCTP G +E+LK + + ++GK AVV+GRS+IVG PVS LLL
Sbjct: 122 FHPINIGKLYID--EQTFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLL 179
Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
+ +A+VTI+HS + D S +++AD++++A G+ ++ +K GA +IDVG N D++ K
Sbjct: 180 QKNASVTILHSRSKDMASYLKDADVIVSAVGKPGLVTKDVVKEGAVIIDVG-NTPDENGK 238
Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
L GDVD+ ++AG +TPVPGGVGP+T+ M+L NTL K
Sbjct: 239 -----LKGDVDYDAVKEIAGAITPVPGGVGPLTITMVLNNTLLAEKM 280
>gnl|CDD|217267 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate
dehydrogenase/cyclohydrolase, NAD(P)-binding domain.
Length = 160
Score = 255 bits (653), Expect = 2e-86
Identities = 95/166 (57%), Positives = 121/166 (72%), Gaps = 8/166 (4%)
Query: 130 HPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK 189
HP+N+G+L + +P F+PCTP+G +ELLKR G+ + GK VV+GRSNIVG P++LLLL
Sbjct: 1 HPINLGRLVL--GEPGFVPCTPRGIMELLKRYGIDLAGKNVVVIGRSNIVGKPLALLLLN 58
Query: 190 ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK 249
A+ATVT+ HS T D I READIV+ A G+ +IK W+KPGA VIDVG N V+
Sbjct: 59 ANATVTVCHSKTKDLAEITREADIVVVAVGKPGLIKADWVKPGAVVIDVGINRVE----- 113
Query: 250 SGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
+LVGDVDF + A +TPVPGGVGPMTVAMLL+NT++ AKR
Sbjct: 114 -NGKLVGDVDFENVKEKASAITPVPGGVGPMTVAMLLQNTVEAAKR 158
>gnl|CDD|133448 cd01080, NAD_bind_m-THF_DH_Cyclohyd, NADP binding domain of
methylene-tetrahydrofolate dehydrogenase/cyclohydrolase.
NADP binding domain of the Methylene-Tetrahydrofolate
Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase)
bifunctional enzyme. Tetrahydrofolate is a versatile
carrier of activated one-carbon units. The major
one-carbon folate donors are N-5 methyltetrahydrofolate,
N5,N10-m-THF, and N10-formayltetrahydrofolate. The
oxidation of metabolic intermediate m-THF to m-THF
requires the enzyme m-THF DH. In addition, most DHs also
have an associated cyclohydrolase activity which
catalyzes its hydrolysis to N10-formyltetrahydrofolate.
m-THF DH is typically found as part of a multifunctional
protein in eukaryotes. NADP-dependent m-THF DH in
mammals, birds and yeast are components of a
trifunctional enzyme with DH, cyclohydrolase, and
synthetase activities. Certain eukaryotic cells also
contain homodimeric bifunctional DH/cyclodrolase form.
In bacteria, monofucntional DH, as well as bifunctional
m-THF m-THF DHm-THF DHDH/cyclodrolase are found. In
addition, yeast (S. cerevisiae) also express an
monofunctional DH. This family contains the bifunctional
DH/cyclohydrolase. M-THF DH, like other amino acid
DH-like NAD(P)-binding domains, is a member of the
Rossmann fold superfamily which includes glutamate,
leucine, and phenylalanine DHs, m-THF DH,
methylene-tetrahydromethanopterin DH, m-THF
DH/cyclohydrolase, Shikimate DH-like proteins, malate
oxidoreductases, and glutamyl tRNA reductase. Amino acid
DHs catalyze the deamination of amino acids to keto
acids with NAD(P)+ as a cofactor. The NAD(P)-binding
Rossmann fold superfamily includes a wide variety of
protein families including NAD(P)- binding domains of
alcohol DHs, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains.
Length = 168
Score = 254 bits (652), Expect = 5e-86
Identities = 101/172 (58%), Positives = 128/172 (74%), Gaps = 5/172 (2%)
Query: 123 EKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLP 182
EKDVDG HP+N+G+LA+ P F+PCTP G LELLKR G+ + GK+ VVVGRSNIVG P
Sbjct: 2 EKDVDGLHPVNLGRLALG--RPGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKP 59
Query: 183 VSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNA 242
++ LLL +ATVT+ HS T + + ++ADIVI A G+ ++KG +KPGA VIDVG N
Sbjct: 60 LAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVIDVGINR 119
Query: 243 VDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAK 294
V D KSG +LVGDVDF A + A +TPVPGGVGPMTVAML++NT++ AK
Sbjct: 120 VPD---KSGGKLVGDVDFESAKEKASAITPVPGGVGPMTVAMLMKNTVEAAK 168
>gnl|CDD|184551 PRK14173, PRK14173, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 287
Score = 258 bits (660), Expect = 1e-85
Identities = 133/287 (46%), Positives = 178/287 (62%), Gaps = 9/287 (3%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
A + G A+ + +E+ + L VP L VV +G S SYV +K + +G
Sbjct: 3 ARELSGPPAAEAVYAELRARLAKLPF----VPHLRVVRLGEDPASVSYVRLKDRQAKALG 58
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
++S LPE S+ EL+ + LN P+V GILVQLPLP HI+ ++VL I KDVDG
Sbjct: 59 LRSQVEVLPESTSQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPLKDVDG 118
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
FHPLN+G+L M G + L PCTP G + LLK G+ + GK VVVGRSNIVG P++ LLL
Sbjct: 119 FHPLNVGRLWM-GGEALE-PCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLL 176
Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
+ DATVT+ HS T D ++ R AD+++ A G+ +I ++PGA V+DVG N V +
Sbjct: 177 REDATVTLAHSKTQDLPAVTRRADVLVVAVGRPHLITPEMVRPGAVVVDVGINRVGGNGG 236
Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
+ L GDV E +VAG +TPVPGGVGPMTVAML+ NT+ A R
Sbjct: 237 RD--ILTGDVH-PEVAEVAGALTPVPGGVGPMTVAMLMANTVIAALR 280
>gnl|CDD|172654 PRK14166, PRK14166, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 253 bits (648), Expect = 6e-84
Identities = 133/289 (46%), Positives = 186/289 (64%), Gaps = 8/289 (2%)
Query: 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGI 69
T++DGKA++ I+ E+ E+ + L K G LAV++VG SQ+YV K KAC E GI
Sbjct: 2 TLLDGKALSAKIKEELKEKNQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEECGI 60
Query: 70 KSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGF 129
KS L E ++ EL++ ++ LN VHGILVQLPLP HI ++ +L I KDVDGF
Sbjct: 61 KSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGF 120
Query: 130 HPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK 189
HP+N+G L + G + FLPCTP G ++LLK + ++GK AV++G SNIVG P++ +LL
Sbjct: 121 HPINVGYLNL-GLESGFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLN 179
Query: 190 ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK 249
A ATV++ H T D R+AD++I AAG +++ +K G V+DVG N ++
Sbjct: 180 AGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGINRLESG--- 236
Query: 250 SGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIE 298
++VGDVDF E K + +TPVPGGVGPMT+AMLL NT+ AK +
Sbjct: 237 ---KIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKSAKNRLN 282
>gnl|CDD|172659 PRK14171, PRK14171, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 288
Score = 246 bits (629), Expect = 6e-81
Identities = 124/287 (43%), Positives = 179/287 (62%), Gaps = 7/287 (2%)
Query: 11 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70
IIDGKA+A I +++ E++ L + P LA+V+VG S YV K K ++GI
Sbjct: 4 IIDGKALANEILADLKLEIQELKSQTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGID 63
Query: 71 SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130
+ ++L + +LISK++ELN+ ++ GI+VQLPLP I++ K+L +S KD+DGFH
Sbjct: 64 TLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPSKDIDGFH 123
Query: 131 PLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKA 190
PLN+G L G F+PCT GCL ++K+ + GK V++GRSNIVG P+S LLLK
Sbjct: 124 PLNVGYL-HSGISQGFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKE 182
Query: 191 DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKS 250
+ +VTI HS T + SI +ADIV+AA G + + + P + VIDVG N + S
Sbjct: 183 NCSVTICHSKTHNLSSITSKADIVVAAIGSPLKLTAEYFNPESIVIDVGINRI------S 236
Query: 251 GYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVI 297
G +++GDVDF +TPVPGG+GPMT+A LL+NT+ K +
Sbjct: 237 GNKIIGDVDFENVKSKVKYITPVPGGIGPMTIAFLLKNTVKAFKDSL 283
>gnl|CDD|172669 PRK14181, PRK14181, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 287
Score = 245 bits (627), Expect = 1e-80
Identities = 128/289 (44%), Positives = 182/289 (62%), Gaps = 10/289 (3%)
Query: 11 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70
++ G A+ I + I E + S PGLAVV++G S+ YV MK K ++G+
Sbjct: 2 LLKGAPAAEHILATIKENISASS----TAPGLAVVLIGNDPASEVYVGMKVKKATDLGMV 57
Query: 71 SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130
S LP + ++++ +H LN P++HGILVQLPLPKH++ + +L IS +KDVDG H
Sbjct: 58 SKAHRLPSDATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPDKDVDGLH 117
Query: 131 PLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK- 189
P+N+GKL + G F+PCTP G +ELLK + + G+ +VGRSNIVG P++ LL++
Sbjct: 118 PVNMGKLLL-GETDGFIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQK 176
Query: 190 ---ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDS 246
+ATVT++HS + + I++ ADI+IAA G + IK I A ++DVGT+ V +
Sbjct: 177 HPDTNATVTLLHSQSENLTEILKTADIIIAAIGVPLFIKEEMIAEKAVIVDVGTSRVPAA 236
Query: 247 TKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
K GY LVGDVDF+ +TPVPGGVGPMTVAML+RNT + R
Sbjct: 237 NPK-GYILVGDVDFNNVVPKCRAITPVPGGVGPMTVAMLMRNTWESYLR 284
>gnl|CDD|172668 PRK14180, PRK14180, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 242 bits (618), Expect = 2e-79
Identities = 133/287 (46%), Positives = 177/287 (61%), Gaps = 8/287 (2%)
Query: 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGI 69
+IDGK++++ ++ +A +V+ P L +IVG S++YV+ K KACA+VGI
Sbjct: 2 ILIDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGI 61
Query: 70 KSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGF 129
S I LPE +E+EL+ + +LN VH ILVQLPLP HIN+ V+ I EKDVDGF
Sbjct: 62 DSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGF 121
Query: 130 HPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK 189
HP N+G+L ++ + L CTPKG + +L+ G+ +G AVVVG SN+VG PVS LLL
Sbjct: 122 HPTNVGRLQLRDKKCL-ESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLN 180
Query: 190 ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK 249
A ATVT H TTD +S +ADI+I A G+ I +K GA VIDVG N VD
Sbjct: 181 AKATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVDG---- 236
Query: 250 SGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRV 296
++VGDVDF +TPVPGGVGPMT+ LL NT A+ +
Sbjct: 237 ---KIVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQEL 280
>gnl|CDD|184550 PRK14169, PRK14169, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 238 bits (608), Expect = 7e-78
Identities = 124/287 (43%), Positives = 182/287 (63%), Gaps = 9/287 (3%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
AT +DG+AV++ I +++ + V L+++ P LAVV+VG S+ YV K++ ++G
Sbjct: 1 ATRLDGRAVSKKILADLKQTVAKLAQQ-DVTPTLAVVLVGSDPASEVYVRNKQRRAEDIG 59
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
++S LPE ++A+L++KV ELN PDV ILVQLPLP ++E+ V+ I +KDVDG
Sbjct: 60 VRSLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPDKDVDG 119
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
F P+++G+L +P + TP G + LL + + GKR V+VGRSNIVG P++ L++
Sbjct: 120 FSPVSVGRLWAN--EPTVVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMV 177
Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
DATVTI HS T + + + +EADI++ A G I +KPGA VIDVG + D
Sbjct: 178 NHDATVTIAHSKTRNLKQLTKEADILVVAVGVPHFIGADAVKPGAVVIDVGISRGADG-- 235
Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
+L+GDVD +A +TPVPGGVGPMT+A L+ T+ AKR
Sbjct: 236 ----KLLGDVDEAAVAPIASAITPVPGGVGPMTIASLMAQTVTLAKR 278
>gnl|CDD|172665 PRK14177, PRK14177, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 235 bits (600), Expect = 9e-77
Identities = 127/284 (44%), Positives = 179/284 (63%), Gaps = 12/284 (4%)
Query: 11 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70
++DGK +++ IR+EI E + K ++P LA ++VG S++YVSMK KAC +VG+
Sbjct: 5 LLDGKKLSEKIRNEIRETIEERKTKNKRIPKLATILVGNNPASETYVSMKVKACHKVGMG 64
Query: 71 SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130
S I L EQ + EL+ + +LN+ P+V GIL+Q P+P I+E I+LEKDVDG
Sbjct: 65 SEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALEKDVDGVT 124
Query: 131 PLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKA 190
L+ GKL+M +LPCTP G + LLK G+ + GK AVVVGRS I+G P+++LL +
Sbjct: 125 TLSFGKLSMGVE--TYLPCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEM 182
Query: 191 DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKS 250
+ATVT+ HS T + SIVR+ADI++ A G+ IK WI GA ++D G N +
Sbjct: 183 NATVTLCHSKTQNLPSIVRQADIIVGAVGKPEFIKADWISEGAVLLDAGYNPGN------ 236
Query: 251 GYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAK 294
VGD++ +A + TPVPGGVGPMT+A+LL TL K
Sbjct: 237 ----VGDIEISKAKDKSSFYTPVPGGVGPMTIAVLLLQTLYSFK 276
>gnl|CDD|201431 pfam00763, THF_DHG_CYH, Tetrahydrofolate
dehydrogenase/cyclohydrolase, catalytic domain.
Length = 117
Score = 164 bits (417), Expect = 3e-51
Identities = 66/118 (55%), Positives = 83/118 (70%), Gaps = 1/118 (0%)
Query: 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGI 69
I+DGKA+A+ I+ E+ EEV L EK G P LAV++VG SQ YV KRKA E+GI
Sbjct: 1 KILDGKALAKKIKEELKEEVAKLKEK-GITPKLAVILVGDDPASQVYVRSKRKAAEELGI 59
Query: 70 KSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVD 127
+S I LPE ++E EL++ + +LN P VHGILVQLPLPKHI+E K+L I EKDVD
Sbjct: 60 ESELIRLPEDITEEELLALIEKLNADPSVHGILVQLPLPKHIDENKILNAIDPEKDVD 117
>gnl|CDD|133451 cd05212, NAD_bind_m-THF_DH_Cyclohyd_like, NAD(P) binding domain of
methylene-tetrahydrofolate dehydrogenase and
methylene-tetrahydrofolate dehydrogenase/cyclohydrolase.
NAD(P) binding domains of methylene-tetrahydrofolate
dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase
bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is
a versatile carrier of activated one-carbon units. The
major one-carbon folate donors are N-5
methyltetrahydrofolate, N5,N10-m-THF, and
N10-formayltetrahydrofolate. The oxidation of metabolic
intermediate m-THF to m-THF requires the enzyme m-THF
DH. In addition, most DHs also have an associated
cyclohydrolase activity which catalyzes its hydrolysis
to N10-formyltetrahydrofolate. m-THF DH is typically
found as part of a multifunctional protein in
eukaryotes. NADP-dependent m-THF DH in mammals, birds
and yeast are components of a trifunctional enzyme with
DH, cyclohydrolase, and synthetase activities. Certain
eukaryotic cells also contain homodimeric bifunctional
DH/cyclodrolase form. In bacteria, mono-functional DH,
as well as bifunctional DH/cyclodrolase are found. In
addition, yeast (S. cerevisiae) also express a
monofunctional DH. M-THF DH, like other amino acid
DH-like NAD(P)-binding domains, is a member of the
Rossmann fold superfamily which includes glutamate,
leucine, and phenylalanine DHs, m-THF DH,
methylene-tetrahydromethanopterin DH, m-THF
DH/cyclohydrolase, Shikimate DH-like proteins, malate
oxidoreductases, and glutamyl tRNA reductase. Amino acid
DHs catalyze the deamination of amino acids to keto
acids with NAD(P)+ as a cofactor. The NAD(P)-binding
Rossmann fold superfamily includes a wide variety of
protein families including NAD(P)- binding domains of
alcohol DHs, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 140
Score = 107 bits (270), Expect = 3e-29
Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 22/155 (14%)
Query: 147 LPCTPKGC-------LELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS 199
PCTP ELL + GV + GK+ +VVGRS IVG P+ LL + ATV
Sbjct: 1 GPCTPLFVSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDW 60
Query: 200 HTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVD 259
T +S V +AD+V+ + + + WIKPGA VI+ +
Sbjct: 61 KTIQLQSKVHDADVVVVGSPKPEKVPTEWIKPGATVINCSPTKLSGD------------- 107
Query: 260 FHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAK 294
+ + A P+ GGVG +TVAM ++N + +
Sbjct: 108 --DVKESASLYVPMTGGVGKLTVAMRMQNMVRSVR 140
>gnl|CDD|133447 cd01079, NAD_bind_m-THF_DH, NAD binding domain of
methylene-tetrahydrofolate dehydrogenase. The
NAD-binding domain of methylene-tetrahydrofolate
dehydrogenase (m-THF DH). M-THF is a versatile carrier
of activated one-carbon units. The major one-carbon
folate donors are N-5 methyltetrahydrofolate,
N5,N10-m-THF, and N10-formayltetrahydrofolate. The
oxidation of metabolic intermediate m-THF to m-THF
requires the enzyme m-THF DH. M-THF DH is a component of
an unusual monofunctional enzyme; in eukaryotes, m-THF
DH is typically found as part of a multifunctional
protein. NADP-dependent m-THF DHs in mammals, birds and
yeast are components of a trifunctional enzyme with DH,
cyclohydrolase, and synthetase activities. Certain
eukaryotic cells also contain homodimeric bifunctional
DH/cyclodrolase form. In bacteria, monofunctional DH, as
well as bifunctional DH/cyclodrolase are found. In
addition, yeast (S. cerevisiae) also express an
monofunctional DH. This family contains only the
monofunctional DHs from S. cerevisiae and certain
bacteria. M-THF DH, like other amino acid DH-like
NAD(P)-binding domains, is a member of the Rossmann fold
superfamily which includes glutamate, leucine, and
phenylalanine DHs, m-THF DH,
methylene-tetrahydromethanopterin DH, m-THF
DH/cyclohydrolase, Shikimate DH-like proteins, malate
oxidoreductases, and glutamyl tRNA reductase. Amino acid
DHs catalyze the deamination of amino acids to keto
acids with NAD(P)+ as a cofactor. The NAD(P)-binding
Rossmann fold superfamily includes a wide variety of
protein families including NAD(P)- binding domains of
alcohol DHs, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 197
Score = 64.0 bits (156), Expect = 3e-12
Identities = 54/208 (25%), Positives = 74/208 (35%), Gaps = 58/208 (27%)
Query: 122 LEKDVDGFHPLNIGKLAMKGR--DP-----LFLPCTPKG---CLELLK------RSGVTI 165
KDV+G I L R DP LPCTP LE L G +
Sbjct: 1 PHKDVEGLSHKYIFNLYHNIRFLDPENRKKSILPCTPLAIVKILEFLGIYNKILPYGNRL 60
Query: 166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIV-----------------HSHTTDPESIV 208
GK ++ RS +VG P++ LL A V V H TD E++
Sbjct: 61 YGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMT 120
Query: 209 RE----ADIVIAAAGQA-MMIKGSWIKPGAAVIDV-GTNAVDDSTKKSGYRLVGDVDFHE 262
+ +D+VI + +K GA I+ + S K+
Sbjct: 121 LDCLSQSDVVITGVPSPNYKVPTELLKDGAICINFASIKNFEPSVKEK------------ 168
Query: 263 ACKVAGCVTPVPGGVGPMTVAMLLRNTL 290
A P +G +T+AMLLRN L
Sbjct: 169 ----ASIYVPS---IGKVTIAMLLRNLL 189
>gnl|CDD|225280 COG2423, COG2423, Predicted ornithine cyclodeaminase, mu-crystallin
homolog [Amino acid transport and metabolism].
Length = 330
Score = 42.7 bits (101), Expect = 1e-04
Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 11/105 (10%)
Query: 201 TTDPESIVREADIVIAA-AGQAMMIKGSWIKPGAAVIDVGTNA-----VDDSTKKSGYRL 254
E V ADIV+ A ++K W+KPG + +G +A +D R+
Sbjct: 186 ADSAEEAVEGADIVVTATPSTEPVLKAEWLKPGTHINAIGADAPGKRELDPEVLARADRV 245
Query: 255 VGDVDFHEACKV-AG--CVTPVPGGVGPMTVAMLLRNTLDGAKRV 296
V VD E + +G G + P + L + + G
Sbjct: 246 V--VDSLEQTRKESGEISQAVAAGVLSPDAIVAELGDVVAGKIPG 288
>gnl|CDD|133449 cd05191, NAD_bind_amino_acid_DH, NAD(P) binding domain of amino
acid dehydrogenase-like proteins. Amino acid
dehydrogenase(DH)-like NAD(P)-binding domains are
members of the Rossmann fold superfamily and are found
in glutamate, leucine, and phenylalanine DHs (DHs),
methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase, Shikimate
DH-like proteins, malate oxidoreductases, and glutamyl
tRNA reductase. Amino acid DHs catalyze the deamination
of amino acids to keto acids with NAD(P)+ as a cofactor.
The NAD(P)-binding Rossmann fold superfamily includes a
wide variety of protein families including NAD(P)-
binding domains of alcohol DHs, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate DH,
lactate/malate DHs, formate/glycerate DHs, siroheme
synthases, 6-phosphogluconate DH, amino acid DHs,
repressor rex, NAD-binding potassium channel domain,
CoA-binding, and ornithine cyclodeaminase-like domains.
These domains have an alpha-beta-alpha configuration.
NAD binding involves numerous hydrogen and van der Waals
contacts.
Length = 86
Score = 37.7 bits (88), Expect = 5e-04
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 19/98 (19%)
Query: 149 CTPKGCLELLKRSGV----TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDP 204
T G + LLK +G ++KGK VV+G + LL + V +
Sbjct: 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR----- 55
Query: 205 ESIVREADIVIAAAGQAMMIKG---SWIKPGAAVIDVG 239
DI++ A + + + I GA VID+
Sbjct: 56 -------DILVTATPAGVPVLEEATAKINEGAVVIDLA 86
>gnl|CDD|235738 PRK06199, PRK06199, ornithine cyclodeaminase; Validated.
Length = 379
Score = 39.7 bits (93), Expect = 0.001
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 17/97 (17%)
Query: 193 TVTIVHSHTTDPESIVREADIVIAAAGQAM-------MIKGSWIKPGAAVIDVGTNAVDD 245
V +V S E +VR +DIV +K W+KPGA ++ +D+
Sbjct: 210 NVEVVDSI----EEVVRGSDIVTYCNSGETGDPSTYPYVKREWVKPGAFLLMPAACRIDE 265
Query: 246 STKKSGYRLVGDVD------FHEACKVAGCVTPVPGG 276
++ R V D F E K A + PV G
Sbjct: 266 GMEQGDVRKVVDNTGLYEAWFEEVPKPAHNLIPVIGV 302
>gnl|CDD|135631 PRK05867, PRK05867, short chain dehydrogenase; Provisional.
Length = 253
Score = 35.0 bits (80), Expect = 0.036
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMI 224
+ GKRA++ G S +G V+L ++A A V I H +++ + AD + + G+ + +
Sbjct: 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHL---DALEKLADEIGTSGGKVVPV 63
Query: 225 KGSWIKP 231
+
Sbjct: 64 CCDVSQH 70
>gnl|CDD|187597 cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogenase/reductase (SDR
family) member 1 (DHRS1) and human hydroxysteroid
dehydrogenase-like protein 2 (HSDL2), classical (c)
SDRs. This subgroup includes human DHRS1 and human
HSDL2 and related proteins. These are members of the
classical SDR family, with a canonical Gly-rich
NAD-binding motif and the typical YXXXK active site
motif. However, the rest of the catalytic tetrad is not
strongly conserved. DHRS1 mRNA has been detected in many
tissues, liver, heart, skeletal muscle, kidney and
pancreas; a longer transcript is predominantly expressed
in the liver , a shorter one in the heart. HSDL2 may
play a part in fatty acid metabolism, as it is found in
peroxisomes. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold (alpha/beta folding
pattern with a central beta-sheet), an NAD(P)(H)-binding
region, and a structurally diverse C-terminal region.
Classical SDRs are typically about 250 residues long,
while extended SDRS are approximately 350 residues.
Sequence identity between different SDR enzymes are
typically in the 15-30% range, but the enzymes share the
Rossmann fold NAD-binding motif and characteristic
NAD-binding and catalytic sequence patterns. These
enzymes have a 3-glycine N-terminal NAD(P)(H)-binding
pattern (typically, TGxxxGxG in classical SDRs and
TGxxGxxG in extended SDRs), while substrate binding is
in the C-terminal region. A critical catalytic Tyr
residue (Tyr-151, human 15-hydroxyprostaglandin
dehydrogenase (15-PGDH) numbering), is often found in a
conserved YXXXK pattern. In addition to the Tyr and Lys,
there is often an upstream Ser (Ser-138, 15-PGDH
numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or
additional Ser, contributing to the active site.
Substrates for these enzymes include sugars, steroids,
alcohols, and aromatic compounds. The standard reaction
mechanism is a proton relay involving the conserved Tyr
and Lys, as well as Asn (or Ser). Some SDR family
members, including 17 beta-hydroxysteroid dehydrogenase
contain an additional helix-turn-helix motif that is not
generally found among SDRs.
Length = 246
Score = 34.3 bits (79), Expect = 0.048
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 167 GKRAVVVGRSNIVGLPVSLLLLKADATVTI---------VHSHTTDPESIVREADIVIAA 217
GK A V G S +G ++L L KA ATV + S + P +I A+ + AA
Sbjct: 3 GKVAFVTGASRGIGRAIALRLAKAGATVVVAAKTASEGDNGSAKSLPGTIEETAEEIEAA 62
Query: 218 AGQAMMIK 225
GQA+ I
Sbjct: 63 GGQALPIV 70
>gnl|CDD|180421 PRK06141, PRK06141, ornithine cyclodeaminase; Validated.
Length = 314
Score = 33.0 bits (76), Expect = 0.15
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 202 TDPESIVREADIVIAAAGQAM-MIKGSWIKPGAAVIDVG 239
TD E+ VR+ADI+ A +++G W+KPG + VG
Sbjct: 181 TDLEAAVRQADIISCATLSTEPLVRGEWLKPGTHLDLVG 219
>gnl|CDD|222002 pfam13241, NAD_binding_7, Putative NAD(P)-binding. This domain is
found in fungi, plants, archaea and bacteria.
Length = 104
Score = 30.9 bits (71), Expect = 0.20
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 21/69 (30%)
Query: 165 IKGKRAVVVGRSNIVGLPVSL----LLLKADATVTIV------------HSHTTDPESIV 208
+KGKR +VVG G V+L LL+A A VT+V +
Sbjct: 5 LKGKRVLVVG-----GGEVALRKIRALLEAGAKVTVVSPEILEAEGLVRLIQREFEPGDL 59
Query: 209 READIVIAA 217
AD+VIAA
Sbjct: 60 DGADLVIAA 68
>gnl|CDD|217026 pfam02423, OCD_Mu_crystall, Ornithine cyclodeaminase/mu-crystallin
family. This family contains the bacterial Ornithine
cyclodeaminase enzyme EC:4.3.1.12, which catalyzes the
deamination of ornithine to proline. This family also
contains mu-Crystallin the major component of the eye
lens in several Australian marsupials, mRNA for this
protein has also been found in human retina.
Length = 313
Score = 32.7 bits (75), Expect = 0.21
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 202 TDPESIVREADIVIAA--AGQAMMIKGSWIKPGAAVIDVGTNAVDD 245
T E V ADIV+ + ++K W+KPG + VG +
Sbjct: 185 TSAEEAVEGADIVVTVTPDKEFPILKAEWVKPGVHINAVGADCPGK 230
>gnl|CDD|187616 cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (GlcDH), classical
(c) SDRs. GlcDH, is a tetrameric member of the SDR
family, it catalyzes the NAD(P)-dependent oxidation of
beta-D-glucose to D-glucono-delta-lactone. GlcDH has a
typical NAD-binding site glycine-rich pattern as well as
the canonical active site tetrad (YXXXK motif plus
upstream Ser and Asn). SDRs are a functionally diverse
family of oxidoreductases that have a single domain with
a structurally conserved Rossmann fold (alpha/beta
folding pattern with a central beta-sheet), an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Classical SDRs are typically about
250 residues long, while extended SDRS are approximately
350 residues. Sequence identity between different SDR
enzymes are typically in the 15-30% range, but the
enzymes share the Rossmann fold NAD-binding motif and
characteristic NAD-binding and catalytic sequence
patterns. These enzymes have a 3-glycine N-terminal
NAD(P)(H)-binding pattern (typically, TGxxxGxG in
classical SDRs and TGxxGxxG in extended SDRs), while
substrate binding is in the C-terminal region. A
critical catalytic Tyr residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering), is often found in a conserved YXXXK pattern.
In addition to the Tyr and Lys, there is often an
upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn
(Asn-107, 15-PGDH numbering) or additional Ser,
contributing to the active site. Substrates for these
enzymes include sugars, steroids, alcohols, and aromatic
compounds. The standard reaction mechanism is a proton
relay involving the conserved Tyr and Lys, as well as
Asn (or Ser). Some SDR family members, including 17
beta-hydroxysteroid dehydrogenase contain an additional
helix-turn-helix motif that is not generally found among
SDRs.
Length = 253
Score = 32.4 bits (74), Expect = 0.23
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTI-VHSHTTDPESIVREADIVIAAAGQAMM 223
+KGK A+V G S+ +G +++ L A A V + S E +V E + A G+A+
Sbjct: 1 LKGKVALVTGASSGIGKAIAIRLATAGANVVVNYRSKEDAAEEVVEE---IKAVGGKAIA 57
Query: 224 IKG 226
++
Sbjct: 58 VQA 60
>gnl|CDD|133443 cd01065, NAD_bind_Shikimate_DH, NAD(P) binding domain of Shikimate
dehydrogenase. Shikimate dehydrogenase (DH) is an amino
acid DH family member. Shikimate pathway links
metabolism of carbohydrates to de novo biosynthesis of
aromatic amino acids, quinones and folate. It is
essential in plants, bacteria, and fungi but absent in
mammals, thus making enzymes involved in this pathway
ideal targets for broad spectrum antibiotics and
herbicides. Shikimate DH catalyzes the reduction of
3-hydroshikimate to shikimate using the cofactor NADH.
Amino acid DH-like NAD(P)-binding domains are members of
the Rossmann fold superfamily and include glutamate,
leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DHs, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 155
Score = 31.1 bits (71), Expect = 0.32
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 25/114 (21%)
Query: 153 GCLELLKRSGVTIKGKRAVVVG-----RSNIVGL----PVSLLLL-----KADATVTIVH 198
G + L+ +G+ +KGK+ +++G R+ L ++++ KA A
Sbjct: 5 GFVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFG 64
Query: 199 SHT-----TDPESIVREADIVI------AAAGQAMMIKGSWIKPGAAVIDVGTN 241
D E ++ EAD++I G + + S +KPG V DV N
Sbjct: 65 ELGIAIAYLDLEELLAEADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYN 118
>gnl|CDD|133446 cd01078, NAD_bind_H4MPT_DH, NADP binding domain of methylene
tetrahydromethanopterin dehydrogenase. Methylene
Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP
binding domain. NADP-dependent H4MPT DH catalyzes the
dehydrogenation of methylene- H4MPT and
methylene-tetrahydrofolate (H4F) with NADP+ as cofactor.
H4F and H4MPT are both cofactors that carry the
one-carbon units between the formyl and methyl oxidation
level. H4F and H4MPT are structurally analogous to each
other with respect to the pterin moiety, but each has
distinct side chain. H4MPT is present only in anaerobic
methanogenic archaea and aerobic methylotrophic
proteobacteria. H4MPT seems to have evolved
independently from H4F and functions as a distinct
carrier in C1 metabolism. Amino acid DH-like
NAD(P)-binding domains are members of the Rossmann fold
superfamily and include glutamate, leucine, and
phenylalanine DHs, methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase, Shikimate
DH-like proteins, malate oxidoreductases, and glutamyl
tRNA reductase. Amino acid DHs catalyze the deamination
of amino acids to keto acids with NAD(P)+ as a cofactor.
The NAD(P)-binding Rossmann fold superfamily includes a
wide variety of protein families including NAD(P)-
binding domains of alcohol DHs, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate DH,
lactate/malate DHs, formate/glycerate DHs, siroheme
synthases, 6-phosphogluconate DH, amino acid DHs,
repressor rex, NAD-binding potassium channel domain,
CoA-binding, and ornithine cyclodeaminase-like domains.
These domains have an alpha-beta-alpha configuration.
NAD binding involves numerous hydrogen and van der Waals
contacts.
Length = 194
Score = 31.2 bits (71), Expect = 0.46
Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 33/119 (27%)
Query: 158 LKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH----------------- 200
L+ G +KGK AVV+G + VG ++LL + A V +V
Sbjct: 19 LELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLV-GRDLERAQKAADSLRARFG 77
Query: 201 -------TTDPES---IVREADIVIA--AAGQAMMIKGSW-IKPGAAVIDVGTNAVDDS 246
T+D + ++ AD+V A AAG ++ K +W KP A DV NAV
Sbjct: 78 EGVGAVETSDDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVAADV--NAVPPV 134
>gnl|CDD|212497 cd11731, Lin1944_like_SDR_c, Lin1944 and related proteins,
classical (c) SDRs. Lin1944 protein from Listeria
Innocua is a classical SDR, it contains a glycine-rich
motif similar to the canonical motif of the SDR
NAD(P)-binding site. However, the typical SDR active
site residues are absent in this subgroup of proteins of
undetermined function. SDRs are a functionally diverse
family of oxidoreductases that have a single domain with
a structurally conserved Rossmann fold (alpha/beta
folding pattern with a central beta-sheet), an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Classical SDRs are typically about
250 residues long, while extended SDRs are approximately
350 residues. Sequence identity between different SDR
enzymes are typically in the 15-30% range, but the
enzymes share the Rossmann fold NAD-binding motif and
characteristic NAD-binding and catalytic sequence
patterns. These enzymes catalyze a wide range of
activities including the metabolism of steroids,
cofactors, carbohydrates, lipids, aromatic compounds,
and amino acids, and act in redox sensing. Classical
SDRs have an TGXXX[AG]XG cofactor binding motif and a
YXXXK active site motif, with the Tyr residue of the
active site motif serving as a critical catalytic
residue (Tyr-151, human prostaglandin dehydrogenase
(PGDH) numbering). In addition to the Tyr and Lys, there
is often an upstream Ser (Ser-138, PGDH numbering)
and/or an Asn (Asn-107, PGDH numbering) contributing to
the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 198
Score = 30.6 bits (70), Expect = 0.66
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 13/65 (20%)
Query: 170 AVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------TDPESIVR------EADIVIA 216
+V+G + +GL V+ LL V + TD SI D +++
Sbjct: 1 IIVIGATGTIGLAVAQLLSAHGHEVITAGRSSGDYQVDITDEASIKALFEKVGHFDAIVS 60
Query: 217 AAGQA 221
AG A
Sbjct: 61 TAGDA 65
>gnl|CDD|187609 cd05351, XR_like_SDR_c, xylulose reductase-like, classical (c)
SDRs. Members of this subgroup include proteins
identified as L-xylulose reductase (XR) and carbonyl
reductase; they are members of the SDR family. XR,
catalyzes the NADP-dependent reduction of L-xyulose and
other sugars. Tetrameric mouse carbonyl reductase is
involved in the metabolism of biogenic and xenobiotic
carbonyl compounds. This subgroup also includes
tetrameric chicken liver D-erythrulose reductase, which
catalyzes the reduction of D-erythrulose to D-threitol.
SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold (alpha/beta folding
pattern with a central beta-sheet), an NAD(P)(H)-binding
region, and a structurally diverse C-terminal region.
Classical SDRs are typically about 250 residues long,
while extended SDRS are approximately 350 residues.
Sequence identity between different SDR enzymes are
typically in the 15-30% range, but the enzymes share the
Rossmann fold NAD-binding motif and characteristic
NAD-binding and catalytic sequence patterns. These
enzymes have a 3-glycine N-terminal NAD(P)(H)-binding
pattern (typically, TGxxxGxG in classical SDRs and
TGxxGxxG in extended SDRs), while substrate binding is
in the C-terminal region. A critical catalytic Tyr
residue (Tyr-151, human 15-hydroxyprostaglandin
dehydrogenase (15-PGDH) numbering), is often found in a
conserved YXXXK pattern. In addition to the Tyr and Lys,
there is often an upstream Ser (Ser-138, 15-PGDH
numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or
additional Ser, contributing to the active site.
Substrates for these enzymes include sugars, steroids,
alcohols, and aromatic compounds. The standard reaction
mechanism is a proton relay involving the conserved Tyr
and Lys, as well as Asn (or Ser).
Length = 244
Score = 30.9 bits (70), Expect = 0.68
Identities = 18/44 (40%), Positives = 22/44 (50%)
Query: 167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVRE 210
GKRA+V G +G L KA A V V D +S+VRE
Sbjct: 7 GKRALVTGAGKGIGRATVKALAKAGARVVAVSRTQADLDSLVRE 50
>gnl|CDD|236034 PRK07502, PRK07502, cyclohexadienyl dehydrogenase; Validated.
Length = 307
Score = 31.1 bits (71), Expect = 0.69
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 196 IVHSHTTDPESIVREADIVI-----AAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKS 250
+ TT V+ AD+VI A+G +KPGA V DVG S K S
Sbjct: 52 LGDRVTTSAAEAVKGADLVILCVPVGASGAVAAEIAPHLKPGAIVTDVG------SVKAS 105
>gnl|CDD|181585 PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional.
Length = 261
Score = 30.5 bits (69), Expect = 0.97
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMI 224
++GK V+ G S +G +++ K A V I ++ +D E A+ + A G+A+ +
Sbjct: 5 LEGKVVVITGGSTGLGRAMAVRFGKEKAKVVI--NYRSDEEEANDVAEEIKKAGGEAIAV 62
Query: 225 KG 226
KG
Sbjct: 63 KG 64
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 30.4 bits (69), Expect = 1.3
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 9/39 (23%)
Query: 209 READIVIAAAGQA--------MMIKGSWIKPGAAVIDVG 239
REA+I IA AGQ M +G+ IK V+++G
Sbjct: 463 REAEI-IAKAGQKGAITIATNMAGRGTDIKLSKEVLELG 500
>gnl|CDD|216708 pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed
for efficient transposition of the insertion sequence or
transposon DNA. This family includes transposases for
IS200 from E. coli.
Length = 120
Score = 28.7 bits (65), Expect = 1.7
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
Query: 88 KVHELNVMPD-VHGILVQLPLPKH 110
++ E+N MPD VH +LV LP PK
Sbjct: 41 EILEINGMPDHVH-LLVSLP-PKL 62
>gnl|CDD|177573 PHA03275, PHA03275, envelope glycoprotein K; Provisional.
Length = 340
Score = 29.8 bits (67), Expect = 1.9
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 142 RDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLL 186
RDP+ C K L L+ R +V+G IV P SLL
Sbjct: 200 RDPIGFLCEHKAALLLIALEVFAHIVARCLVLGTVGIVHTPCSLL 244
>gnl|CDD|184464 PRK14031, PRK14031, glutamate dehydrogenase; Provisional.
Length = 444
Score = 29.5 bits (66), Expect = 2.1
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 155 LELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS--HTTDPESIVRE 210
+E+LK G +KGK +V G N+ +L VT+ S + DP+ I RE
Sbjct: 216 MEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDRE 273
>gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate
dehydrogenase. The NAD binding domain of
6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Length = 163
Score = 28.6 bits (65), Expect = 2.4
Identities = 37/135 (27%), Positives = 53/135 (39%), Gaps = 44/135 (32%)
Query: 180 GLPVSLLLLKADATVTIVHSHTTD---------------PESIVREADIVIA--AAGQA- 221
G P++L LLKA TVT V++ T + P V AD+VI AG A
Sbjct: 12 GSPMALNLLKAGYTVT-VYNRTPEKVEELVAEGAVGAASPAEFVASADVVITMVPAGAAV 70
Query: 222 -MMIKGSW-----IKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCV---TP 272
+I G +KPG +ID T+ DD+ + + G P
Sbjct: 71 DAVILGEDGLLPGLKPGDIIIDGSTSDPDDTRR-----------RAKELAEKGIHFLDAP 119
Query: 273 VPGGV-----GPMTV 282
V GG G +++
Sbjct: 120 VSGGEEGAEAGTLSI 134
>gnl|CDD|187584 cd05323, ADH_SDR_c_like, insect type alcohol dehydrogenase
(ADH)-like, classical (c) SDRs. This subgroup contains
insect type ADH, and 15-hydroxyprostaglandin
dehydrogenase (15-PGDH) type I; these proteins are
classical SDRs. ADH catalyzes the NAD+-dependent
oxidation of alcohols to aldehydes/ketones. This
subgroup is distinct from the zinc-dependent alcohol
dehydrogenases of the medium chain
dehydrogenase/reductase family, and evolved in fruit
flies to allow the digestion of fermenting fruit.
15-PGDH catalyzes the NAD-dependent interconversion of
(5Z,13E)-(15S)-11alpha,15-dihydroxy-9-oxoprost-13-enoate
and (5Z,13E)-11alpha-hydroxy-9,15-dioxoprost-13-enoate,
and has a typical SDR glycine-rich NAD-binding motif,
which is not fully present in ADH. SDRs are a
functionally diverse family of oxidoreductases that have
a single domain with a structurally conserved Rossmann
fold (alpha/beta folding pattern with a central
beta-sheet), an NAD(P)(H)-binding region, and a
structurally diverse C-terminal region. Classical SDRs
are typically about 250 residues long, while extended
SDRs are approximately 350 residues. Sequence identity
between different SDR enzymes are typically in the
15-30% range, but the enzymes share the Rossmann fold
NAD-binding motif and characteristic NAD-binding and
catalytic sequence patterns. These enzymes catalyze a
wide range of activities including the metabolism of
steroids, cofactors, carbohydrates, lipids, aromatic
compounds, and amino acids, and act in redox sensing.
Classical SDRs have an TGXXX[AG]XG cofactor binding
motif and a YXXXK active site motif, with the Tyr
residue of the active site motif serving as a critical
catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering). In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) contributing
to the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 244
Score = 28.4 bits (64), Expect = 3.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSH 200
K A++ G ++ +GL + LLLK A V I+ +
Sbjct: 1 KVAIITGGASGIGLATAKLLLKKGAKVAILDRN 33
>gnl|CDD|182233 PRK10090, PRK10090, aldehyde dehydrogenase A; Provisional.
Length = 409
Score = 28.9 bits (65), Expect = 3.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 15 KAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVS 58
+ +A IR +E L+ E+ GK+ LA V V D Y++
Sbjct: 2 RKIAAGIRERASEISALIVEEGGKIQQLAEVEVAFTADYIDYMA 45
>gnl|CDD|236894 PRK11289, ampC, beta-lactamase/D-alanine carboxypeptidase;
Provisional.
Length = 384
Score = 28.7 bits (65), Expect = 4.0
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 16 AVAQTIRSEIAEEVRLLSEKYGKVPGLAV-VIVGGR 50
A Q ++ + + L E+ +PG+AV VI G+
Sbjct: 26 ATPQQLKDIVDRTITPLMEEQD-IPGMAVAVIYNGK 60
>gnl|CDD|236221 PRK08291, PRK08291, ectoine utilization protein EutC; Validated.
Length = 330
Score = 28.4 bits (64), Expect = 4.2
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 202 TDPESIVREADIVIAAA-GQAMMIKGSWIKPGAAVIDVGTNA 242
D V ADI++ + ++K W+ PG V +G++A
Sbjct: 189 RDVHEAVAGADIIVTTTPSEEPILKAEWLHPGLHVTAMGSDA 230
>gnl|CDD|218156 pfam04577, DUF563, Protein of unknown function (DUF563). Family of
uncharacterized proteins.
Length = 206
Score = 28.2 bits (63), Expect = 4.6
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 10/88 (11%)
Query: 157 LLKRSGVTIKGKRAVVVGRSN-----IVGLPVSLLLLKADATVTIVHSHTTDPE---SIV 208
L +R ++ R V + R I+ L IV T E +
Sbjct: 91 LRERFNLSKIKPRKVYISRKKAGRRRILNEDELEEALP-KYGFEIVDPETLSLEEQVKLF 149
Query: 209 READIVIAAAGQAMMIKGSWIKPGAAVI 236
A +++ G + + ++ PG V+
Sbjct: 150 SSAKVIVGPHG-SALTNLIFMPPGTGVV 176
>gnl|CDD|184025 PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenase; Provisional.
Length = 262
Score = 28.3 bits (63), Expect = 4.9
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 163 VTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAM 222
+ GK AVV G ++ +G ++L L +A A V I + ++ AD + A G+A+
Sbjct: 3 SNLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAV---ADEINKAGGKAI 59
>gnl|CDD|240630 cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic
domains. Alanine dehydrogenase (L-AlaDH) catalyzes the
NAD-dependent conversion of pyruvate to L-alanine via
reductive amination. Like formate dehydrogenase and
related enzymes, L-AlaDH is comprised of 2 domains
connected by a long alpha helical stretch, each
resembling a Rossmann fold NAD-binding domain. The
NAD-binding domain is inserted within the linear
sequence of the more divergent catalytic domain. Ligand
binding and active site residues are found in the cleft
between the subdomains. L-AlaDH is typically hexameric
and is critical in carbon and nitrogen metabolism in
micro-organisms.
Length = 359
Score = 28.5 bits (65), Expect = 4.9
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 19/63 (30%)
Query: 194 VTIVHSHTTDPESIVREADIVIAAAGQAMMIKG------------SWIKPGAAVIDVGTN 241
VT ++S+ + E ++EAD+VI A++I G +KPG+ ++DV
Sbjct: 215 VTTLYSNPANLEEALKEADLVIG----AVLIPGAKAPKLVTEEMVKTMKPGSVIVDV--- 267
Query: 242 AVD 244
A+D
Sbjct: 268 AID 270
>gnl|CDD|224562 COG1648, CysG, Siroheme synthase (precorrin-2
oxidase/ferrochelatase domain) [Coenzyme metabolism].
Length = 210
Score = 28.0 bits (63), Expect = 5.2
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 21/72 (29%)
Query: 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIV-------------------HSHTTDPE 205
++GK+ +VVG + V L + LLLKA A VT+V D E
Sbjct: 10 LEGKKVLVVGGGS-VALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAE 68
Query: 206 SIVREADIVIAA 217
+ A +VIAA
Sbjct: 69 DLDD-AFLVIAA 79
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 28.3 bits (64), Expect = 5.2
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 209 READIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGD 257
EA+ + A +A+ +K G + D+G A++D KK+GY +V D
Sbjct: 123 EEAEKLCRVAEEALWAGIKQVKAGRPLNDIG-RAIEDFAKKNGYSVVRD 170
>gnl|CDD|133455 cd05313, NAD_bind_2_Glu_DH, NAD(P) binding domain of glutamate
dehydrogenase, subgroup 2. Amino acid dehydrogenase
(DH) is a widely distributed family of enzymes that
catalyzes the oxidative deamination of an amino acid to
its keto acid and ammonia with concomitant reduction of
NADP+. Glutamate DH is a multidomain enzyme that
catalyzes the reaction from glutamate to 2-oxyoglutarate
and ammonia in the presence of NAD or NADP. It is
present in all organisms. Enzymes involved in ammonia
asimilation are typically NADP+-dependent, while those
involved in glutamate catabolism are generally
NAD+-dependent. Amino acid DH-like NAD(P)-binding
domains are members of the Rossmann fold superfamily and
include glutamate, leucine, and phenylalanine DHs,
methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase, Shikimate
DH-like proteins, malate oxidoreductases, and glutamyl
tRNA reductase. Amino acid DHs catalyze the deamination
of amino acids to keto acids with NAD(P)+ as a cofactor.
The NAD(P)-binding Rossmann fold superfamily includes a
wide variety of protein families including NAD(P)-
binding domains of alcohol DHs, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate DH,
lactate/malate DHs, formate/glycerate DHs, siroheme
synthases, 6-phosphogluconate DH, amino acid DHs,
repressor rex, NAD-binding potassium channel domain,
CoA-binding, and ornithine cyclodeaminase-like domains.
These domains have an alpha -beta-alpha configuration.
NAD binding involves numerous hydrogen and van der Waals
contacts.
Length = 254
Score = 28.0 bits (63), Expect = 5.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 154 CLELLKRSGVTIKGKRAVVVGRSNI 178
E+LK T+KGKR + G N+
Sbjct: 25 VEEMLKDRNETLKGKRVAISGSGNV 49
>gnl|CDD|223848 COG0777, AccD, Acetyl-CoA carboxylase beta subunit [Lipid
metabolism].
Length = 294
Score = 28.0 bits (63), Expect = 5.7
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 125 DVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVS 184
D F L+ +DPL P + K + L+ + AVV G I GLPV
Sbjct: 70 DEGSFEELDSPLEP---KDPLKFPDS-KKYKDRLEAARKKTGLDDAVVTGEGTINGLPVV 125
Query: 185 L 185
L
Sbjct: 126 L 126
>gnl|CDD|180818 PRK07062, PRK07062, short chain dehydrogenase; Provisional.
Length = 265
Score = 28.1 bits (63), Expect = 6.0
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTI 196
++G+ AVV G S+ +GL LLL+A A+V I
Sbjct: 6 LEGRVAVVTGGSSGIGLATVELLLEAGASVAI 37
>gnl|CDD|233854 TIGR02409, carnitine_bodg, gamma-butyrobetaine hydroxylase.
Members of this protein family are gamma-butyrobetaine
hydroxylase, both bacterial and eukarytotic. This enzyme
catalyzes the last step in the conversion of lysine to
carnitine. Carnitine can serve as a compatible solvent
in bacteria and also participates in fatty acid
metabolism.
Length = 366
Score = 28.2 bits (63), Expect = 6.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSE 34
+ +DG AVA+ +R E E R+LS
Sbjct: 217 SEFVDGFAVAEALRKENPEAFRILSS 242
>gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Validated.
Length = 246
Score = 27.8 bits (63), Expect = 6.5
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAG 219
+GK A+V G S +G ++L L A V I S+ E++ E + AAG
Sbjct: 4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAE----LRAAG 53
>gnl|CDD|234849 PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit;
Provisional.
Length = 305
Score = 27.7 bits (63), Expect = 8.2
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 26/72 (36%)
Query: 164 TIKGKRAVVVG--------RSNIVGLPVSLLLLKADATVTIV------------HSHTTD 203
++G + +VG RSNI L + A V ++ + TD
Sbjct: 153 RLEGLKVAIVGDIKHSRVARSNI------QALTRLGAEVRLIAPPTLLPEGMPEYGVHTD 206
Query: 204 PESIVREADIVI 215
+ ++ +AD+V+
Sbjct: 207 LDEVIEDADVVM 218
>gnl|CDD|235736 PRK06196, PRK06196, oxidoreductase; Provisional.
Length = 315
Score = 27.3 bits (61), Expect = 9.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 161 SGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTI 196
+G + GK A+V G + +GL + L +A A V +
Sbjct: 20 AGHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIV 55
>gnl|CDD|212093 cd11555, SLC-NCS1sbd_u1, uncharacterized
nucleobase-cation-symport-1 (NCS1) transporter
subfamily; solute-binding domain. NCS1s are essential
components of salvage pathways for nucleobases and
related metabolites; their known substrates include
allantoin, uracil, thiamine, and nicotinamide riboside.
NCS1s belong to a superfamily which also contains the
solute carrier 5 family sodium/glucose transporters
(SLC5s), and solute carrier 6 family neurotransmitter
transporters (SLC6s).
Length = 459
Score = 27.5 bits (62), Expect = 9.0
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 165 IKGKRAVVVGRSNIVGLPVSLL------LLKADATVTIVHSHTTDPESIVREAD----IV 214
K ++AV G N GLPV+ L ++ T+ + TDP IV D V
Sbjct: 241 AKSEKAVRRG--NFWGLPVNFLLFSLISVVTTAGTIPVFGEAITDPVEIVARIDNLTATV 298
Query: 215 IAA 217
+AA
Sbjct: 299 LAA 301
>gnl|CDD|132037 TIGR02992, ectoine_eutC, ectoine utilization protein EutC. Members
of this protein family are EutA, a predicted
arylmalonate decarboxylase found in a conserved ectoine
utilization operon of species that include Sinorhizobium
meliloti 1021 (where it is known to be induced by
ectoine), Mesorhizobium loti, Silicibacter pomeroyi,
Agrobacterium tumefaciens, and Pseudomonas putida. This
family belongs to the ornithine
cyclodeaminase/mu-crystallin family (pfam02423).
Length = 326
Score = 27.5 bits (61), Expect = 9.5
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 202 TDPESIVREADIVIAAA-GQAMMIKGSWIKPGAAVIDVGTNA 242
TDP + + ADI++ + ++ W++PG V +G++A
Sbjct: 186 TDPRAAMSGADIIVTTTPSETPILHAEWLEPGQHVTAMGSDA 227
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 27.7 bits (62), Expect = 9.6
Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 5/86 (5%)
Query: 8 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEV 67
KA +I G +A+ + EE EK G I K + + E
Sbjct: 381 KALVIRGYPLAEALSKVKEEE--RPREKEGTEEEERREITVYEKRIKKLEETVERLEEE- 437
Query: 68 GIKSFDIDLPEQVSEAE-LISKVHEL 92
+L E E E L S++
Sbjct: 438 -NSELKRELEELKREIEKLESELERF 462
>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases.
Phosphoglycerate dehydrogenases (PGDHs) catalyze the
initial step in the biosynthesis of L-serine from
D-3-phosphoglycerate. PGDHs come in 3 distinct
structural forms, with this first group being related to
2-hydroxy acid dehydrogenases, sharing structural
similarity to formate and glycerate dehydrogenases of
the D-specific 2-hydroxyacid dehydrogenase superfamily,
which also include groups such as L-alanine
dehydrogenase and S-adenosylhomocysteine hydrolase.
Despite often low sequence identity, these proteins
typically have a characteristic arrangement of 2 similar
subdomains of the alpha/beta Rossmann fold NAD+ binding
form. The NAD+ binding domain is inserted within the
linear sequence of the mostly N-terminal catalytic
domain, which has a similar domain structure to the
internal NAD binding domain. Structurally, these domains
are connected by extended alpha helices and create a
cleft in which NAD is bound, primarily to the C-terminal
portion of the 2nd (internal) domain. Some related
proteins have similar structural subdomain but with a
tandem arrangement of the catalytic and NAD-binding
subdomains in the linear sequence. Many, not all,
members of this family are dimeric.
Length = 308
Score = 27.5 bits (62), Expect = 10.0
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 188 LKADATVTIVHSHTTDPESIV---READIVIA 216
L A VT+ + H D +++ D ++
Sbjct: 21 LDDRAEVTVFNDHLLDEDALAERLAPFDAIVL 52
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.136 0.386
Gapped
Lambda K H
0.267 0.0831 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,367,642
Number of extensions: 1522778
Number of successful extensions: 2057
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1954
Number of HSP's successfully gapped: 125
Length of query: 299
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 203
Effective length of database: 6,679,618
Effective search space: 1355962454
Effective search space used: 1355962454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.3 bits)