RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 022295
(299 letters)
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate
cyclohydrolase...; THF, bifunctional, oxidoreductase;
HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2
PDB: 1dia_A* 1dib_A* 1dig_A*
Length = 301
Score = 498 bits (1285), Expect = e-180
Identities = 145/294 (49%), Positives = 194/294 (65%), Gaps = 3/294 (1%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEV 67
A I++GK ++ IR+ + +V L E+ G P LA++ VG R DS Y+++K KA E+
Sbjct: 4 AEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEI 63
Query: 68 GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKH--INEEKVLGEISLEKD 125
GIK+ I LP +E+E++ + LN VHG LVQLPL IN E+V+ I+ EKD
Sbjct: 64 GIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKD 123
Query: 126 VDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSL 185
VDG +N G+LA + F+PCTPKGCLEL+K +GV I G+ AVVVGRS IVG P+
Sbjct: 124 VDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHD 183
Query: 186 LLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD 245
LLL +ATVT HS T + V + DI++ A GQ M+KG WIKPGA VID G N V D
Sbjct: 184 LLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVPD 243
Query: 246 STKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKRVIEL 299
K +G ++VGDV + EA + A +TPVPGGVGPMTVAML+++T++ AKR +E
Sbjct: 244 DKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRFLEK 297
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase,
hydrolase, leishmaniasis; 2.70A {Leishmania major}
Length = 300
Score = 498 bits (1284), Expect = e-180
Identities = 168/290 (57%), Positives = 208/290 (71%), Gaps = 3/290 (1%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEV 67
A IIDGKA+A IRSE+ ++V L E Y G+VPGLA +IVG R DS+ YV +K KA AEV
Sbjct: 6 AQIIDGKAIAAAIRSELKDKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAEV 65
Query: 68 GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVD 127
G+ SF+++LPE +S+ L V +LN P+ HGI+VQLPLPKH+NE + + +I KD D
Sbjct: 66 GMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPHKDAD 125
Query: 128 GFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLL 187
P+N+G L KGR+P F PCT KG + LLKR G+ + GKRAVV+GRSNIVG PV+ LL
Sbjct: 126 ALLPVNVGLLHYKGREPPFTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALL 185
Query: 188 LKADATVTIVHSH--TTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDD 245
+K +ATVTIVHS T D +R ADIVIAA GQ +KG WIK GAAV+DVGT V D
Sbjct: 186 MKENATVTIVHSGTSTEDMIDYLRTADIVIAAMGQPGYVKGEWIKEGAAVVDVGTTPVPD 245
Query: 246 STKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
++K GYRLVGDV F EA A ++PVPGGVGPMT+AMLL NTL+ K
Sbjct: 246 PSRKDGYRLVGDVCFEEAAARAAWISPVPGGVGPMTIAMLLENTLEAFKA 295
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A
{Pseudomonas aeruginosa PAO1}
Length = 286
Score = 473 bits (1220), Expect = e-171
Identities = 144/287 (50%), Positives = 183/287 (63%), Gaps = 8/287 (2%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
A +IDGKA+A +R +IA+ V ++ +VPGLAV++VG SQ YV+ KRK C EVG
Sbjct: 5 AQLIDGKAIAANLRQQIAQRVTERRQQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEVG 64
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
S DLP + S+ +L++ + LN P + GILVQLPLP H++ +L I +KDVDG
Sbjct: 65 FLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPDKDVDG 124
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
FHP NIG+LA R PL PCTPKG + LL +G + G AVVVG SNIVG P++L LL
Sbjct: 125 FHPYNIGRLAQ--RMPLLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELL 182
Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
TVT+ H T D V AD+V+ AAG+ ++KG WIK GA VIDVG N D
Sbjct: 183 LGGCTVTVTHRFTRDLADHVSRADLVVVAAGKPGLVKGEWIKEGAIVIDVGINRQADG-- 240
Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
RLVGDV++ A + A +TPVPGGVGPMT A LL NTL A+
Sbjct: 241 ----RLVGDVEYEVAAQRASWITPVPGGVGPMTRACLLENTLHAAEH 283
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase,
cyclcohydrolase, channeling, oxidoreductase,hydrolase;
2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Length = 288
Score = 471 bits (1214), Expect = e-170
Identities = 143/287 (49%), Positives = 179/287 (62%), Gaps = 8/287 (2%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
A IIDGK +AQ +RSE+A++V+ + PGLAVV+VG SQ YV+ KRKAC EVG
Sbjct: 3 AKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVG 62
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
S DLPE SEAEL+ + LN + GILVQLPLP I+ KVL I +KDVDG
Sbjct: 63 FVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDG 122
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
FHP N+G+L R P PCTP+G + LL+R + G AVV+G SNIVG P+S+ LL
Sbjct: 123 FHPYNVGRLCQ--RAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELL 180
Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
A T T+ H T + V AD++I A G+ I G WIK GA VIDVG N +++
Sbjct: 181 LAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENG-- 238
Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
++VGDV F +A K A +TPVPGGVGPMTVA L+ NTL
Sbjct: 239 ----KVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVE 281
>3l07_A Bifunctional protein fold; structural genomics, IDP01849,
methylenetetrahydrofolate dehydrogenase; 1.88A
{Francisella tularensis}
Length = 285
Score = 470 bits (1211), Expect = e-169
Identities = 132/287 (45%), Positives = 175/287 (60%), Gaps = 8/287 (2%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
+IDGK++++ ++ +A +V+ P L +IVG S++YV+ K KACA+VG
Sbjct: 4 MILIDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVG 63
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
I S I LPE +E+EL+ + +LN VH ILVQLPLP HIN+ V+ I EKDVDG
Sbjct: 64 IDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDG 123
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
FHP N+G+L ++ + CTPKG + +L+ G+ +G AVVVG SN+VG PVS LLL
Sbjct: 124 FHPTNVGRLQLRDK-KCLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLL 182
Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
A ATVT H TTD +S +ADI+I A G+ I +K GA VIDVG N VD
Sbjct: 183 NAKATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVDG--- 239
Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
++VGDVDF +TPVPGGVGPMT+ LL NT A+
Sbjct: 240 ----KIVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQE 282
>3p2o_A Bifunctional protein fold; structural genomics, center for
structural genomics of infec diseases, csgid,
alpha-beta-alpha sandwich; HET: NAD; 2.23A
{Campylobacter jejuni subsp}
Length = 285
Score = 467 bits (1205), Expect = e-168
Identities = 133/287 (46%), Positives = 186/287 (64%), Gaps = 8/287 (2%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
T++DGKA++ I+ E+ E+ + L K G LAV++VG SQ+YV K KAC E G
Sbjct: 4 MTLLDGKALSAKIKEELKEKNQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEECG 62
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
IKS L E +++ EL++ ++ LN VHGILVQLPLP HI ++ +L I KDVDG
Sbjct: 63 IKSLVYHLNENITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDG 122
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
FHP+N+G L + G + FLPCTP G ++LLK + ++GK AV++G SNIVG P++ +LL
Sbjct: 123 FHPINVGYLNL-GLESGFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLL 181
Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK 248
A ATV++ H T D R+AD++I AAG +++ +K G V+DVG N ++
Sbjct: 182 NAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGINRLESG-- 239
Query: 249 KSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
++VGDVDF E K + +TPVPGGVGPMT+AMLL NT+ AK
Sbjct: 240 ----KIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKSAKN 282
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate
cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis}
PDB: 2c2y_A
Length = 281
Score = 447 bits (1152), Expect = e-160
Identities = 127/289 (43%), Positives = 174/289 (60%), Gaps = 13/289 (4%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
A ++DGKA I ++ + V L G+ PGL ++VG SQ+YV K CA+VG
Sbjct: 3 AIMLDGKATRDEIFGDLKQRVAALDAA-GRTPGLGTILVGDDPGSQAYVRGKHADCAKVG 61
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
I S DLP +S A L + ELN PD G +VQLPLPKH++E L + KD DG
Sbjct: 62 ITSIRRDLPADISTATLNETIDELNANPDCTGYIVQLPLPKHLDENAALERVDPAKDADG 121
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
HP N+G+L + P LPCTP+G + LL+R ++I G VV+GR VG P+ LLL
Sbjct: 122 LHPTNLGRLVL--GTPAPLPCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLT 179
Query: 189 K--ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDS 246
+ +ATVT+ H+ T D ++ R+ADIV+AA G A ++ ++PGAAVIDVG + DD
Sbjct: 180 RRSENATVTLCHTGTRDLPALTRQADIVVAAVGVAHLLTADMVRPGAAVIDVGVSRTDD- 238
Query: 247 TKKSGYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
LVGDV + ++AG V+P PGGVGP+T A LL N ++ A+R
Sbjct: 239 ------GLVGDVHP-DVWELAGHVSPNPGGVGPLTRAFLLTNVVELAER 280
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate
dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 3ngl_A
Length = 276
Score = 441 bits (1138), Expect = e-158
Identities = 84/285 (29%), Positives = 151/285 (52%), Gaps = 16/285 (5%)
Query: 11 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70
I+ G+ +A+ + + E+ G P L ++ +G + + Y K + ++GI
Sbjct: 3 ILRGEEIAEKKAENLHGII----ERSGLEPSLKLIQIGDNEAASIYARAKIRRGKKIGIA 58
Query: 71 SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130
D++ + +S +L+ ++ +L P ++GI+++ PLPK + +++ I KDVD
Sbjct: 59 V-DLEKYDDISMKDLLKRIDDLAKDPQINGIMIENPLPKGFDYYEIVRNIPYYKDVDALS 117
Query: 131 PLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKA 190
P N G +A+ +P TP+ ++++ G +V RS +VG P+S++LL
Sbjct: 118 PYNQGLIAL--NREFLVPATPRAVIDIMDYYG--YHENTVTIVNRSPVVGRPLSMMLLNR 173
Query: 191 DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKS 250
+ TV++ HS T D S+ R + IV+ A G+ + + PG+ VIDVG N V+D
Sbjct: 174 NYTVSVCHSKTKDIGSMTRSSKIVVVAVGRPGFLNREMVTPGSVVIDVGINYVND----- 228
Query: 251 GYRLVGDVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
++VGD +F + + +TPVPGGVGP+T +L N + A+
Sbjct: 229 --KVVGDANFEDLSEYVEAITPVPGGVGPITATNILENVVKAAEF 271
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding
domain, monofunctional, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB:
1ee9_A*
Length = 320
Score = 365 bits (939), Expect = e-127
Identities = 71/332 (21%), Positives = 121/332 (36%), Gaps = 64/332 (19%)
Query: 7 QKATIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACA 65
+ I VA+T +EI V + + G+ P L + ++ Y + +K
Sbjct: 3 KPGRTILASKVAETFNTEIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSE 62
Query: 66 EVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKD 125
+G + DL + L + + N V+GI+V P+ + ++ + + EKD
Sbjct: 63 SMGFRY---DLRVIEDKDFLEEAIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKD 119
Query: 126 VDGFHPLNIGKL-------AMKGRDPLFLPCTPKGCLELLKR---------SGVTIKGKR 169
V+G + + L + R LPCTP +++L+ G + GK+
Sbjct: 120 VEGLNHVYYQNLYHNVRYLDKENRLKSILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKK 179
Query: 170 AVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD-------------------------P 204
+V+ RS IVG P++ LL ATV V +
Sbjct: 180 CIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLL 239
Query: 205 ESIVREADIVIAAAGQA-MMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEA 263
+ ++D+VI +IK GA I+ +
Sbjct: 240 KKCSLDSDVVITGVPSENYKFPTEYIKEGAVCINFACT---------------KNFSDDV 284
Query: 264 CKVAGCVTPVPGGVGPMTVAMLLRNTLDGAKR 295
+ A P+ G V T+AMLLRN L +
Sbjct: 285 KEKASLYVPMTGKV---TIAMLLRNMLRLVRN 313
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 53.8 bits (129), Expect = 2e-08
Identities = 27/154 (17%), Positives = 49/154 (31%), Gaps = 31/154 (20%)
Query: 156 ELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVH----------------S 199
++ + TI G V+G + G+ V+ A V +
Sbjct: 144 MAIQHTDFTIHGANVAVLGLGRV-GMSVARKFAALGAKVKVGARESDLLARIAEMGMEPF 202
Query: 200 HTTDPESIVREADIVIAAAGQAMMIKG---SWIKPGAAVIDVGTNAVDDSTKKSGYRLVG 256
H + +R+ D+ I A+++ + + VID+ S
Sbjct: 203 HISKAAQELRDVDVCINTI-PALVVTANVLAEMPSHTFVIDLA----------SKPGGTD 251
Query: 257 DVDFHEACKVAGCVTPVPGGVGPMTVAMLLRNTL 290
+ A V +PG V P T +L + L
Sbjct: 252 FRYAEKRGIKALLVPGLPGIVAPKTAGRILADVL 285
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 47.1 bits (112), Expect = 3e-06
Identities = 31/160 (19%), Positives = 54/160 (33%), Gaps = 43/160 (26%)
Query: 156 ELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIV----------------HS 199
++ + TI G + V+G G+ ++ A V +
Sbjct: 146 LAIQHTDYTIHGSQVAVLG-LGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPF 204
Query: 200 HTTDPESIVREADIVIAAA-----GQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRL 254
HT + + V++ DI I Q ++ S + P ++D+ A
Sbjct: 205 HTDELKEHVKDIDICINTIPSMILNQTVL---SSMTPKTLILDL---ASRP--------- 249
Query: 255 VGDVDFHEACKVAG----CVTPVPGGVGPMTVAMLLRNTL 290
G DF + + G +PG V P T +L N L
Sbjct: 250 -GGTDF-KYAEKQGIKALLAPGLPGIVAPKTAGQILANVL 287
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer,
rossmann-fold NAD domain, human MU crystallin homolog;
HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13
PDB: 1vll_A
Length = 322
Score = 42.6 bits (101), Expect = 8e-05
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 9/74 (12%)
Query: 201 TTDPESIVREADIVIAA-AGQAMMIKGSWIKPGAAVIDVGTNA-----VDDSTKKSGYRL 254
+ P D+++ + ++K W++ G + +G + +D K ++
Sbjct: 178 SVQPAEEASRCDVLVTTTPSRKPVVKAEWVEEGTHINAIGADGPGKQELDVEILKKA-KI 236
Query: 255 VGDVDFHEACKVAG 268
V VD E K G
Sbjct: 237 V--VDDLEQAKHGG 248
>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds
L-proline, 2 bundle, beta barrel, rossmann fold, lyase;
HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP:
c.2.1.13 PDB: 1u7h_A*
Length = 350
Score = 38.9 bits (91), Expect = 0.001
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 11/76 (14%)
Query: 201 TTDPESIVREADIVIAA---AGQAMMIKGSWIKPGAAVIDVGTNA-----VDDSTKKSGY 252
+ V+ DI+ A +I ++PG + VG + + ++
Sbjct: 185 ASSVAEAVKGVDIITTVTADKAYATIITPDMLEPGMHLNAVGGDCPGKTELHADVLRNA- 243
Query: 253 RLVGDVDFHEACKVAG 268
R+ V++ ++ G
Sbjct: 244 RVF--VEYEPQTRIEG 257
>2i99_A MU-crystallin homolog; thyroid hormine binding protein,
oxidoreductase; HET: NDP; 2.60A {Homo sapiens}
Length = 312
Score = 38.4 bits (90), Expect = 0.002
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Query: 201 TTDPESIVREADIVIAA-AGQAMMIKGSWIKPGAAVIDVGTNA-----VDDSTKKSGYRL 254
+ + V AD++I ++ G W+KPGA + VG + +DD K L
Sbjct: 187 CSSVQEAVAGADVIITVTLATEPILFGEWVKPGAHINAVGASRPDWRELDDELMKEA-VL 245
Query: 255 VGDVDFHEACK 265
VD EA
Sbjct: 246 Y--VDSQEAAL 254
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.002
Identities = 45/279 (16%), Positives = 76/279 (27%), Gaps = 107/279 (38%)
Query: 14 GKAVAQTIRSEIAEEV-----RLLSEKYG--------KVPGLAVVIVG---GRKDSQSYV 57
G + +T S+ A++V + YG P + G G++ ++Y
Sbjct: 1632 GMDLYKT--SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 58 SMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVL 117
+M + + G L + K INE
Sbjct: 1690 AMIFETIVD---------------------------------GKLKTEKIFKEINEH--S 1714
Query: 118 GEISLEKDVDGFHPLNIGKL--------AMKGRDPLFLPCTPKGCLELLKRSGVTIKGKR 169
+ G L A+ L K E LK G+
Sbjct: 1715 TSYTFR------SE--KGLLSATQFTQPAL------TL--MEKAAFEDLKSKGLIPAD-- 1756
Query: 170 AVVVGRSNIVG----LPVSLLLLKADA-----TVTIVH-----SHTTDPESIVREADIVI 215
A G S +G L SL AD V +V P + ++ +
Sbjct: 1757 ATFAGHS--LGEYAAL-ASL----ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM 1809
Query: 216 AAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRL 254
A + A+ V V+ K++G+ +
Sbjct: 1810 IAINPGRVAASF---SQEALQYV----VERVGKRTGWLV 1841
Score = 33.9 bits (77), Expect = 0.065
Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 12/94 (12%)
Query: 1 MAAPSDQKATIIDGKAVAQTIRSEIAEEVRLLSE--KYGKVPGLAVVIVGGRKDSQSYVS 58
M A + + + Q + + + L E Y V V G + +
Sbjct: 1809 MIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY-NVENQQYVAAGDLRA----LD 1863
Query: 59 MKRKACAEVGIKSFDI-DLPEQVSEAELISKVHE 91
+ ++ DI +L + +S + +V
Sbjct: 1864 TVTNVLNFIKLQKIDIIELQKSLS----LEEVEG 1893
Score = 29.6 bits (66), Expect = 1.4
Identities = 26/141 (18%), Positives = 40/141 (28%), Gaps = 42/141 (29%)
Query: 70 KSFDIDLP----------EQVSEAELISK-----VHELNVMPDVHGILVQLPLPKHIN-- 112
+ F+ LP E + AEL+ K + P G Q+ L +
Sbjct: 35 EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE--PSKVGQFDQV-LNLCLTEF 91
Query: 113 EEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKG-KRAV 171
E L D+ H L KL + L+K + IK A
Sbjct: 92 ENCYLE----GNDI---HAL-AAKLLQENDTT------------LVKTKEL-IKNYITAR 130
Query: 172 VVGRSNIVGLPVSLLLLKADA 192
++ + S L
Sbjct: 131 IMAKRPFDKKSNSALFRAVGE 151
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 36.6 bits (85), Expect = 0.007
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 13/90 (14%)
Query: 167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIV-HSHTTDPESIVREADIVI-----AAAGQ 220
K +V G + GL + L + ++I+ ESI+ AD+VI +
Sbjct: 22 HKIVIVGGYGKLGGL-FARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLE 80
Query: 221 AMMIKGSWIKPGAAVIDVGTNAVDDSTKKS 250
+ ++ + D+ S K+
Sbjct: 81 TIERLKPYLTENMLLADLT------SVKRE 104
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate,
oxidative decarboxylation pathway, tyrosine
biosynthesis, oxidoreduct; HET: NAD; 2.10A
{Streptococcus mutans} PDB: 3dzb_A
Length = 290
Score = 36.4 bits (85), Expect = 0.007
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 12/61 (19%)
Query: 196 IVHSHTTDPESIVREADIVI------AAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK 249
IV T D + AD++I ++ +K + D G STK
Sbjct: 52 IVDEATADFKVFAALADVIILAVPIKKTIDFIKILADLDLKEDVIITDAG------STKY 105
Query: 250 S 250
Sbjct: 106 E 106
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 35.6 bits (82), Expect = 0.012
Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 28/113 (24%)
Query: 159 KRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTI--------------------VH 198
K +G ++KGK+AVV+ + VG+ + LL A V + V+
Sbjct: 111 KAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVN 170
Query: 199 SHTTDP------ESIVREADIVI--AAAGQAMMIKGSWIKPGAAVIDVGTNAV 243
+ V+ A V A G ++ + +W + I NA
Sbjct: 171 VTAAETADDASRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQ 223
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis
TOH structural genomics, PSI-2, protein structure
initiative; 1.70A {Bordetella pertussis}
Length = 313
Score = 35.7 bits (83), Expect = 0.013
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 202 TDPESIVREADIVIAAAGQAM-MIKGSWIKPGAAVIDVGTNA-----VDDSTKKSGYRLV 255
P I +ADIV+ A + G ++ GA V +G++ +DD + +V
Sbjct: 175 AAPADIAAQADIVVTATRSTTPLFAGQALRAGAFVGAIGSSLPHTRELDDEALRRARAVV 234
Query: 256 GDVDFHEAC 264
V++ E
Sbjct: 235 --VEWREQT 241
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for
structural genomics of infec diseases, csgid; HET: EPE;
1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A*
3pgj_A* 3o8q_B*
Length = 281
Score = 35.2 bits (82), Expect = 0.019
Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 23/109 (21%)
Query: 153 GCLELLKRSGVTIKGKRAVVVG-----RSNIVGL----PVSLLLL-----KADATVTIVH 198
G ++ L V +KG +++G R + L P S+ + KA+ +V
Sbjct: 112 GLVQDLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVA 171
Query: 199 SHTT----DPESIVREADIVIAA-----AGQAMMIKGSWIKPGAAVIDV 238
++ E + + D++I + G+ I + D+
Sbjct: 172 AYGEVKAQAFEQLKQSYDVIINSTSASLDGELPAIDPVIFSSRSVCYDM 220
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 34.4 bits (80), Expect = 0.029
Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 20/106 (18%)
Query: 153 GCLELLKRSGVTIKGKRAVVVG-----RSNIVGLP---VSLLLL-----KADATVTIVHS 199
G L+ LK +K K +V+G R+ I L + L KA
Sbjct: 115 GFLKSLKSLIPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPL 174
Query: 200 HTTD-PESIVREADIVIAA-----AGQAMM-IKGSWIKPGAAVIDV 238
+ PE ++ + +++ + IK V+D+
Sbjct: 175 EVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFNYDLIKKDHVVVDI 220
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold,
amino-acid biosynthesis, amino acid biosynthesis, NADP,
oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB:
3doo_A*
Length = 277
Score = 33.3 bits (77), Expect = 0.066
Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 21/107 (19%)
Query: 153 GCLELLKRSGVTIKGKRAVVVG-----RSNIVGLP---VSLLLL------KADATVTIVH 198
G + LK+ I+ +++G + L L + + + ++
Sbjct: 103 GYVNGLKQIYEGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNIN 162
Query: 199 SHT-TDPESIVREADIVIAA-----AGQAMM-IKGSWIKPGAAVIDV 238
+ ES + E DI+I G I + + V D+
Sbjct: 163 KINLSHAESHLDEFDIIINTTPAGMNGNTDSVISLNRLASHTLVSDI 209
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 32.7 bits (74), Expect = 0.12
Identities = 14/98 (14%), Positives = 34/98 (34%), Gaps = 18/98 (18%)
Query: 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHS-------------HTTDPESIVRE 210
+ K ++G +G ++ + + + + TD + + E
Sbjct: 8 DVGPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDE 67
Query: 211 ADIVIAA---AGQAMMIKG--SWIKPGAAVIDVGTNAV 243
AD+V+ A + + ++PG V+ + A
Sbjct: 68 ADVVVLALPDNIIEKVAEDIVPRVRPGTIVLILDAAAP 105
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A
{Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB:
1p74_A*
Length = 272
Score = 32.1 bits (74), Expect = 0.15
Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 35/110 (31%)
Query: 158 LKRSGVTIKGKRAVVVG-----RSNIVGLPVSLLLLKADATVTIV-------------HS 199
L+R + +++G + V L LL+A + +
Sbjct: 110 LQRLNWLRPNQHVLILGAGGATKG------VLLPLLQAQQNIVLANRTFSKTKELAERFQ 163
Query: 200 HTTDPESI------VREADIVIAA-----AGQAMMIKGSWIKPGAAVIDV 238
+ +++ ++ D+VI A +G + +K G+A D+
Sbjct: 164 PYGNIQAVSMDSIPLQTYDLVINATSAGLSGGTASVDAEILKLGSAFYDM 213
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft
separation, oxidoreductase; HET: NAP; 1.50A {Escherichia
coli} SCOP: c.2.1.7 c.58.1.5
Length = 271
Score = 31.7 bits (73), Expect = 0.22
Identities = 27/111 (24%), Positives = 38/111 (34%), Gaps = 37/111 (33%)
Query: 158 LKRSGVTIKGKRAVVVG-----RSNIVGLPVSLLLLKADATVTI---------------- 196
L+R G R +++G R V L LL D VTI
Sbjct: 110 LERLSFIRPGLRILLIGAGGASRG------VLLPLLSLDCAVTITNRTVSRAEELAKLFA 163
Query: 197 ----VHSHTTDPESIVREADIVIAA-----AGQAMMIKGSWIKPGAAVIDV 238
+ + + D E E D++I A +G I S I PG D+
Sbjct: 164 HTGSIQALSMD-ELEGHEFDLIINATSSGISGDIPAIPSSLIHPGIYCYDM 213
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein
structure initiative; HET: NAP; 2.35A
{Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Length = 287
Score = 31.0 bits (71), Expect = 0.42
Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 30/116 (25%)
Query: 153 GCLELLKRSGVTIKGKRAVVVG-----RSNIVGLP----VSLL---LLKADATVTIVHSH 200
G L+ +K K V+ G R+ L + + + KA+A +
Sbjct: 114 GARMALEEEIGRVKDKNIVIYGAGGAARAVAFELAKDNNIIIANRTVEKAEALAKEIAEK 173
Query: 201 TT----------DPESIVREADIVIAA--------AGQAMMIKGSWIKPGAAVIDV 238
+ + DI+I A ++K ++ V+D+
Sbjct: 174 LNKKFGEEVKFSGLDVDLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDL 229
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography
structure, oxidoreductase; HET: OMT NAP; 1.55A
{Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 31.0 bits (71), Expect = 0.43
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 12/60 (20%)
Query: 196 IVHSHTTDPESIVREADIVIAAAGQAMMIK-----GSWIKPGAAVIDVGTNAVDDSTKKS 250
+V D +++ A I+ +++ + P A V DV S K +
Sbjct: 44 LVDEAGQDLS-LLQTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTDVA------SVKTA 96
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 30.9 bits (70), Expect = 0.45
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 2/73 (2%)
Query: 190 ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK 249
A+ T V + R+AD VI AA +KPG V A +
Sbjct: 126 ANVAHTFVVDVAQGTQVTGRKAD-VIKAAHLCAEAALRLVKPGNQNTQVT-EAWNKVAHS 183
Query: 250 SGYRLVGDVDFHE 262
+ + H+
Sbjct: 184 FNCTPIEGMLSHQ 196
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 30.8 bits (70), Expect = 0.53
Identities = 8/67 (11%), Positives = 16/67 (23%), Gaps = 1/67 (1%)
Query: 155 LELLKRSGVTIKGKRAVV-VGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADI 213
+ L V G + + + K V + E D
Sbjct: 578 MRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDS 637
Query: 214 VIAAAGQ 220
++ G+
Sbjct: 638 LVLVTGR 644
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction,
structural genomics, NPPSFA; 2.25A {Geobacillus
kaustophilus}
Length = 297
Score = 30.2 bits (69), Expect = 0.64
Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 27/109 (24%)
Query: 157 LLKRSGVTIKGKRAVVVG-----RSNIVGL------PVSLL---------LLKADATVTI 196
L + +T+ GKR +V+G R L + + L++
Sbjct: 131 LEEEMNITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRS 190
Query: 197 VHSHTTDPESIVREADIVI-------AAAGQAMMIKGSWIKPGAAVIDV 238
+ + E+ + E DI+I + + ++PG V D+
Sbjct: 191 AYFSLAEAETRLAEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDI 239
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid; HET: NAD SKM; 1.45A
{Listeria monocytogenes} PDB: 3toz_A*
Length = 315
Score = 30.3 bits (69), Expect = 0.70
Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 37/123 (30%)
Query: 153 GCLELLKRSGVTIKGKRAVVVG-----RSNIVGL------PVSLL------LLKADATVT 195
G + LK +G I GK+ + G + + +S+ A+ TV
Sbjct: 140 GYMRALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVE 199
Query: 196 IVHSHT------------TDPESIVREADIVI--------AAAGQAMMIKGSWIKPGAAV 235
++S T + E+ I G+ ++ ++P V
Sbjct: 200 KINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIV 259
Query: 236 IDV 238
DV
Sbjct: 260 SDV 262
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A
{Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Length = 281
Score = 29.9 bits (68), Expect = 0.87
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 12/61 (19%)
Query: 196 IVHSHTTDPESIV-READIVIAA----AGQAMMIK-GSWIKPGAAVIDVGTNAVDDSTKK 249
I+ TT + D V+ + + + K + A V D G S K
Sbjct: 47 IIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQG------SVKG 100
Query: 250 S 250
Sbjct: 101 K 101
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
PDB: 3ggg_D* 3ggp_A*
Length = 314
Score = 29.9 bits (68), Expect = 0.88
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 12/61 (19%)
Query: 196 IVHSHTTDPESIV-READIVIAA----AGQAMMIK-GSWIKPGAAVIDVGTNAVDDSTKK 249
I+ TT + D V+ + + + K + A V D G S K
Sbjct: 79 IIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQG------SVKG 132
Query: 250 S 250
Sbjct: 133 K 133
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid; HET: NAD;
1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A*
1vi2_A*
Length = 312
Score = 29.9 bits (68), Expect = 0.98
Identities = 17/123 (13%), Positives = 35/123 (28%), Gaps = 37/123 (30%)
Query: 153 GCLELLKRSGVTIKGKRAVVVG-----RSNIVGLP-----------------------VS 184
G + +K SG ++GK V++G +
Sbjct: 134 GHIRAIKESGFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAK 193
Query: 185 LLLLKADATVTIVHSHTTDP-ESIVREADIVI--------AAAGQAMMIKGSWIKPGAAV 235
+ D VT+ + ADI+ ++++ S ++P V
Sbjct: 194 RVNENTDCVVTVTDLADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLRPELLV 253
Query: 236 IDV 238
+
Sbjct: 254 TEC 256
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 29.9 bits (67), Expect = 1.2
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 154 CLELLKRSGVTIKGKRAVVVGRS-NIVGLPVSLLLLKADATVTIVHSHTTDPESI 207
LE RSG+T +GK A++ G +G V LL A V IV + +
Sbjct: 639 GLEAAARSGLTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKV-IVTTSRFSRQVT 692
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F
structural genomics, JCSG, protein structure initiative;
2.60A {Corynebacterium glutamicum atcc 13032}
Length = 341
Score = 29.3 bits (66), Expect = 1.5
Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 10/61 (16%)
Query: 194 VTIVHSHTTDPESIVREADIVIAA----AGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKK 249
+ + E +++ A A +++ P DV S K
Sbjct: 52 FDVSADLEATLQRAAAEDALIVLAVPMTAIDSLLDAVHTHAPNNGFTDVV------SVKT 105
Query: 250 S 250
+
Sbjct: 106 A 106
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG,
oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Length = 424
Score = 29.4 bits (67), Expect = 1.6
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 4/82 (4%)
Query: 156 ELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVI 215
E +K+ G+ ++ R ++ G N G ++ + A A V + + + I
Sbjct: 210 EAVKKKGIKLQNARIIIQGFGN-AGSFLAKFMHDAGAKVIGISDANG---GLYNPDGLDI 265
Query: 216 AAAGQAMMIKGSWIKPGAAVID 237
G VI
Sbjct: 266 PYLLDKRDSFGMVTNLFTDVIT 287
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.5 bits (66), Expect = 1.6
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 163 VTIKGKRAVV--VGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESI 207
VT K K ++ G+ +I G V LL+ A V +V + +
Sbjct: 472 VTFKDKYVLITGAGKGSI-GAEVLQGLLQGGAKV-VVTTSRFSKQVT 516
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 28.8 bits (65), Expect = 1.7
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 14/70 (20%)
Query: 167 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHT-------TDPESIVREA------DI 213
+ +++G S +G V L+ A V H+ T+ +SI + D
Sbjct: 3 AMKILLIGASGTLGSAVK-ERLEKKAEVITAGRHSGDVTVDITNIDSIKKMYEQVGKVDA 61
Query: 214 VIAAAGQAMM 223
+++A G A
Sbjct: 62 IVSATGSATF 71
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex,
amino-acid biosynthesis, aromatic A biosynthesis, NAD,
oxidoreductase; HET: NAD; 1.00A {Corynebacterium
glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Length = 283
Score = 29.1 bits (66), Expect = 1.8
Identities = 20/116 (17%), Positives = 33/116 (28%), Gaps = 30/116 (25%)
Query: 153 GCLELLKRSGVTIKGKRAVVVG-----RSNIVGLP---VSLLLL------KADATVTIVH 198
G ++ K V VG + L V L + +A A +++
Sbjct: 113 GFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVIN 172
Query: 199 SHT----------TDPESIVREADIVIAA------AGQAMMIKGSWIKPGAAVIDV 238
+ E ++ AD V+ A A S + V DV
Sbjct: 173 NAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDV 228
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer,
oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces
cerevisiae} SCOP: c.2.1.11 e.37.1.1
Length = 274
Score = 28.9 bits (64), Expect = 2.0
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIV 197
+K KR +++G VGL L+ +T+V
Sbjct: 11 LKDKRILLIG-GGEVGLTRLYKLMPTGCKLTLV 42
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural
genomics, PSI-biology, midwest center for structu
genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Length = 312
Score = 29.0 bits (65), Expect = 2.0
Identities = 13/124 (10%), Positives = 31/124 (25%), Gaps = 30/124 (24%)
Query: 178 IVGLPVSLLLLKADATVTIVHSHTT-----------------DPESIVREADIVI----- 215
++ L +A A + + + E D++
Sbjct: 34 EAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTA 93
Query: 216 AAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVTPVPG 275
AA + G + GA D + + K++ ++ + + V
Sbjct: 94 QAALEVAQQAGPHLCEGALYADF--TSCSPAVKRAIGDVI------SRHRPSAQYAAVAV 145
Query: 276 GVGP 279
Sbjct: 146 MSAV 149
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A
{Pseudomonas putida}
Length = 272
Score = 28.6 bits (65), Expect = 2.0
Identities = 14/105 (13%), Positives = 33/105 (31%), Gaps = 23/105 (21%)
Query: 157 LLKRSGVTIKGKRAVVVG-----RSNIVGL----PVSLLLL-----KADATVTIVHSHTT 202
+ + G ++ +R +++G R ++ P L++ KA A +
Sbjct: 110 IEENLGEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRL 169
Query: 203 DPESI----VREADIVIAA-----AGQAMMIKGSWIKPGAAVIDV 238
+ DIV+ A + + A ++
Sbjct: 170 RISRYEALEGQSFDIVVNATSASLTADLPPLPADVLGEAALAYEL 214
>2wzx_A Beta-lactamase; inhibitor, hydrolase, antibiotic resistance; HET:
ZX0; 1.40A {Pseudomonas aeruginosa} PDB: 2wzz_A*
3s1y_A* 3s22_A*
Length = 371
Score = 28.9 bits (65), Expect = 2.1
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 14 GKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRK 51
G+A A +++ + V+ + + +PGLAV I +
Sbjct: 1 GEAPADRLKALVDAAVQPVMKAND-IPGLAVAISLKGE 37
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium
toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A*
1c0k_A*
Length = 363
Score = 28.5 bits (63), Expect = 2.4
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 168 KRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTT-DPESIV 208
KR VV+G S ++GL +L+L + +V I+ D S
Sbjct: 7 KRVVVLG-SGVIGLSSALILARKGYSVHILARDLPEDVSSQT 47
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 28.8 bits (64), Expect = 2.6
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 154 CLELLKRSGVTIKGKRAVV--VGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESI 207
LE +GVT K K ++ G+ +I G V LL+ A V +V + +
Sbjct: 662 GLEKAAFNGVTFKDKYVLITGAGKGSI-GAEVLQGLLQGGAKV-VVTTSRFSKQVT 715
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin
biosynthesis, NAD, oxidoreducta porphyrin biosynthesis;
2.30A {Bacillus megaterium}
Length = 223
Score = 28.0 bits (63), Expect = 3.2
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 29/76 (38%)
Query: 165 IKGKRAVVVGRSNIVGLPVSL----LLLKADATVTIVHSHTTDPE--------------- 205
+KG+ +VVG G ++ L+ A +T+V + T E
Sbjct: 29 LKGRSVLVVG-----GGTIATRRIKGFLQEGAAITVV-APTVSAEINEWEAKGQLRVKRK 82
Query: 206 ----SIVREADIVIAA 217
+ ++ A
Sbjct: 83 KVGEEDLLNVFFIVVA 98
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 28.0 bits (63), Expect = 3.5
Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Query: 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMI 224
+ K + V +GL S L+K + ++ +P ++ I
Sbjct: 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAEL--KAINPKVNITFH 60
Query: 225 KG 226
Sbjct: 61 TY 62
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 28.3 bits (64), Expect = 3.7
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 164 TIKGKRAVVVG--RSNIVGLPVSLLLLKADATVTI 196
T + K+ +V+G RS G + LL K A VT+
Sbjct: 6 TFENKKVLVLGLARS---GEAAARLLAKLGAIVTV 37
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 27.9 bits (63), Expect = 4.2
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIK 225
G+ A+V G S +G ++ LL+A A V I ++A G I
Sbjct: 28 AGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATR----LSAYGDCQAIP 83
Query: 226 G 226
Sbjct: 84 A 84
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD;
2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB:
1pjb_A* 1say_A
Length = 361
Score = 27.8 bits (63), Expect = 4.3
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 15/61 (24%)
Query: 194 VTIVHSHTTDPESIVREADIVIAA---AGQA-------MMIKGSWIKPGAAVIDVGTNAV 243
V +++S++ + E+ V EAD++I A G+ +++ ++ G+ ++DV AV
Sbjct: 214 VELLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVE--QMRTGSVIVDV---AV 268
Query: 244 D 244
D
Sbjct: 269 D 269
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 27.6 bits (62), Expect = 4.3
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIV----HSHTTDPESIVREADIVIAAAGQA 221
+GK + G S +GL ++ + A V +V H P +I A + A GQA
Sbjct: 8 RGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQA 67
Query: 222 MMIKG 226
+ I G
Sbjct: 68 LPIVG 72
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA,
national project on protein structural and function
analyses; 2.71A {Thermus thermophilus}
Length = 369
Score = 27.8 bits (63), Expect = 4.3
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 15/61 (24%)
Query: 194 VTIVHSHTTDPESIVREADIVIAA---AGQA-------MMIKGSWIKPGAAVIDVGTNAV 243
V + + + + V+ AD++I A G M+ +K GA ++DV AV
Sbjct: 213 VITLTATEANIKKSVQHADLLIGAVLVPGAKAPKLVTRDMLS--LMKEGAVIVDV---AV 267
Query: 244 D 244
D
Sbjct: 268 D 268
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI;
2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A
2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Length = 377
Score = 27.8 bits (63), Expect = 4.4
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 194 VTIVHSHTTDPESIVREADIVIAA---AGQA-------MMIKGSWIKPGAAVIDVGTNAV 243
+ +S + E V+ AD+VI A G ++ +KPGA ++D+ A+
Sbjct: 215 IHTRYSSAYELEGAVKRADLVIGAVLVPGAKAPKLVSNSLVA--HMKPGAVLVDI---AI 269
Query: 244 D 244
D
Sbjct: 270 D 270
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain
enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Length = 301
Score = 27.5 bits (62), Expect = 4.9
Identities = 18/128 (14%), Positives = 35/128 (27%), Gaps = 43/128 (33%)
Query: 180 GLPVSLLLLKADATVTIVHSHTTD---------------PESIVREADIVI--------- 215
G P+++ LLK TV + + +DI+
Sbjct: 16 GKPMAINLLKEGVTVY-AFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIV 74
Query: 216 --AAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKVAGCVT-- 271
G ++ K G ++D+ + + + + + G
Sbjct: 75 ETVMNGPGGVLSA--CKAGTVIVDMSSVSPSST-----------LKMAKVAAEKGIDYVD 121
Query: 272 -PVPGGVG 278
PV GG
Sbjct: 122 APVSGGTK 129
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein;
structural genomics, oxidoreductase, amino-acid
biosynthesis; 2.10A {Clostridium acetobutylicum}
Length = 282
Score = 27.5 bits (62), Expect = 5.0
Identities = 16/107 (14%), Positives = 36/107 (33%), Gaps = 22/107 (20%)
Query: 153 GCLELLKRSGVTIKGKRAVVVG-----RSNIVGL------PVSLL---LLKADATVTIVH 198
G ++L + V IK VV+G R+ + L + ++ K
Sbjct: 108 GFGKMLSKFRVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFK 167
Query: 199 SHTTDPESIVREADIVI-------AAAGQAMMIKGSWIKPGAAVIDV 238
+ D S + + D++I + + ++ +D+
Sbjct: 168 VISYDELSNL-KGDVIINCTPKGMYPKEGESPVDKEVVAKFSSAVDL 213
>3on3_A Keto/oxoacid ferredoxin oxidoreductase, gamma SUB; structural
genomics, PSI-2, protein structure initiative; 2.19A
{Geobacter sulfurreducens}
Length = 183
Score = 27.2 bits (61), Expect = 5.4
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 206 SIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACK 265
+ D ++A +A + +K G ++ V ++ V Y+ + A
Sbjct: 66 PKATQCDALLALTQEACDKYSADLKEGGVLL-VDSDLVTKLPPG-NYQTTAFNIINTAKN 123
Query: 266 VAG 268
G
Sbjct: 124 DVG 126
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 27.5 bits (61), Expect = 6.6
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIV----HSHTTDPESIVREADIVIAAAGQA 221
G + G S +G ++L K A + I H +I A+ + A G+A
Sbjct: 44 AGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKA 103
Query: 222 MMIKG 226
+
Sbjct: 104 LPCIV 108
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 27.1 bits (61), Expect = 7.0
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQA 221
+KGK A+V G + +G ++ L+ A V I + E++ + A A
Sbjct: 8 LKGKTALVTGSTAGIGKAIATSLVAEGANVLI---NGRREENVNETIKEIRAQYPDA 61
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 7.1
Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 7/28 (25%)
Query: 19 QTIRSEIAEEVRLLSEKY--GKVPGLAV 44
Q ++ ++ ++L Y P LA+
Sbjct: 20 QALK-KLQASLKL----YADDSAPALAI 42
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 27.2 bits (61), Expect = 7.1
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIV----HSHTTDPESIVREADIVIAAAGQA 221
GK + G S +GL ++L + A V I ++ P +I A V AA GQ
Sbjct: 5 SGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQG 64
Query: 222 MMIKG 226
+ +K
Sbjct: 65 LALKC 69
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A
{Thermus thermophilus}
Length = 419
Score = 27.1 bits (61), Expect = 7.6
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 156 ELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATV 194
L KR G+ ++G R VV G VG V+L + V
Sbjct: 207 ALAKRRGLDLRGARVVVQGLGQ-VGAAVALHAERLGMRV 244
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands,
dimer, cavity, oxidoreductase; 2.30A {Pseudomonas
putida}
Length = 430
Score = 27.2 bits (59), Expect = 7.9
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTD 203
KR +VG + GL + L L + D VT+ D
Sbjct: 21 MKKRIGIVG-AGTAGLHLGLFLRQHDVDVTVYTDRKPD 57
>1zkj_A CMY-10, extended-spectrum beta-lactamase; plasmid, class C,
hydrolase; 1.55A {Enterobacter aerogenes}
Length = 359
Score = 27.1 bits (60), Expect = 8.0
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 14/50 (28%)
Query: 2 AAPSDQKATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRK 51
A+P D ++D +I+ + E ++PG+AV ++ K
Sbjct: 3 ASPVDPLRPVVD-----ASIQPLLKE---------HRIPGMAVAVLKDGK 38
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ,
RISC, slicer, RNAse H hydrolase-gene regulation complex;
2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10
PDB: 1z25_A 1z26_A
Length = 771
Score = 27.1 bits (59), Expect = 8.3
Identities = 7/45 (15%), Positives = 12/45 (26%)
Query: 25 IAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGI 69
I E V +S I K S ++ + +
Sbjct: 457 IIEVVEQVSSFMKGKELGLAFIAARNKLSSEKFEEIKRRLFNLNV 501
>2qz6_A Beta-lactamase; psychrophIle, cold adaptation, antibiotic
resistance, hydrolase, periplasm; 2.26A {Pseudomonas
fluorescens}
Length = 358
Score = 27.0 bits (60), Expect = 8.4
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 18 AQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRK 51
A IR + V L ++ + GL+V ++ K
Sbjct: 1 ATDIRQVVDSTVEPLMQQQD-IAGLSVAVIQNGK 33
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast;
3.10A {Plasmodium falciparum}
Length = 456
Score = 27.2 bits (61), Expect = 8.5
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 156 ELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATV 194
+LK ++ K+ +V G N V + L++ A V
Sbjct: 228 NVLKDLNDNLENKKCLVSGSGN-VAQYLVEKLIEKGAIV 265
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 26.7 bits (60), Expect = 8.7
Identities = 13/53 (24%), Positives = 20/53 (37%)
Query: 166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAA 218
G RA+V G +G L + A V V +D S+ +E +
Sbjct: 6 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVC 58
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine
catabolism, NADP+, structural GEN riken structural
genomics/proteomics initiative; HET: NDP; 1.80A {Thermus
thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Length = 289
Score = 26.8 bits (60), Expect = 8.8
Identities = 15/101 (14%), Positives = 24/101 (23%), Gaps = 25/101 (24%)
Query: 189 KADATVTIVHSHTTDPESIVREADIVIA--------AAGQAMMIKGSWIKPGAAVIDVGT 240
KA P V EA ++ + ++ G +D +
Sbjct: 35 KALRHQE-EFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPY--LREGTYWVDATS 91
Query: 241 NAVDDSTKKSGYRLVGDVDFHEACKVAGCVT---PVPGGVG 278
+ S E + G PV GG
Sbjct: 92 GEPEAS-----------RRLAERLREKGVTYLDAPVSGGTS 121
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 26.7 bits (60), Expect = 9.0
Identities = 14/53 (26%), Positives = 20/53 (37%)
Query: 166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAA 218
G+R +V G +G L A V V D +S+VRE +
Sbjct: 6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVC 58
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 26.8 bits (60), Expect = 9.1
Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIK 225
+ +V G + +G ++ + +A A V + + S+ A++ AG + ++
Sbjct: 40 SARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVT--AELGELGAGNVIGVR 97
Query: 226 G 226
Sbjct: 98 L 98
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase;
oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Length = 421
Score = 26.7 bits (60), Expect = 9.5
Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 4/85 (4%)
Query: 156 ELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPES--IVREADI 213
E KR G+ ++ + V G N VG + + V + + + + E I
Sbjct: 201 ESAKRFGIKMEDAKIAVQGFGN-VGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGI 259
Query: 214 VIAAAGQAMMIKGSWIK-PGAAVID 237
+ I PGA I
Sbjct: 260 DFKELLAYKEANKTLIGFPGAERIT 284
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.386
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,713,818
Number of extensions: 307985
Number of successful extensions: 1235
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1167
Number of HSP's successfully gapped: 140
Length of query: 299
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 206
Effective length of database: 4,105,140
Effective search space: 845658840
Effective search space used: 845658840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.5 bits)