BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022296
(299 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O27710|PSLS_METTH Phosphosulfolactate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=comA PE=3 SV=1
Length = 258
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 119/283 (42%), Gaps = 47/283 (16%)
Query: 17 RAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVV 76
R+ KPR+ G+T + +S+ D+ E +VD +KF G+ L + ++E V
Sbjct: 11 RSGKPRKNGITMVLDKGMGPASAR----DLMEISSDYVDFIKFGWGTLPLHRRDTVKEKV 66
Query: 77 KRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYV 136
DV G I + +EY ++ + +GF+T+E++ G++EI E R +
Sbjct: 67 DMYRSFDVEPYPGGTLFE-IAHLNDKVEEYFQEARSLGFETLEISNGTVEIETEEKCRLI 125
Query: 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGIN 196
+ G F V+ +RDR P+ +
Sbjct: 126 EMAVDEG------FMVLSEVGKKDPERDRLL------------------EPD-------D 154
Query: 197 KSRRAERCLEAGADMIMIDSDD------VCKHADSLRADIIAKVIGRLGLEKTMFEATNP 250
+ R L AGA M+++++ + + ++R D + RL +++ ++EA
Sbjct: 155 RVRLVRADLRAGASMVLMEARESGQNIGIYDERGNIREDEFNHLTDRLPMDRIIWEAPQK 214
Query: 251 RTSEWFIRRYGPKVNL-FVDHSQVMDLEC----LRGRNLGKSH 288
+FI + GP VNL + ++ LE LRG LGK +
Sbjct: 215 SQQVYFILKIGPDVNLGNIPPEEITALETIRRGLRGDTLGKVN 257
>sp|Q57703|PSLS_METJA Phosphosulfolactate synthase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=comA PE=1 SV=1
Length = 251
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 109/252 (43%), Gaps = 37/252 (14%)
Query: 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV-STGDWAEHLIRNGPS 101
+ED + G ++D +KF G+ +++ + ++E + + V G E+ G
Sbjct: 28 VEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKGK- 86
Query: 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPS 161
F E++ +C+++GF+ +E++ GS +I E ++ K G F V+
Sbjct: 87 -FDEFLNECEKLGFEAVEISDGSSDISLEERKNAIKRAKDNG------FMVLTEVGKKMP 139
Query: 162 DRDRAFGAYVARAPRSTDKLFLASNPEIEVGVG--INKSRRAERCLEAGADMIMIDSDDV 219
D+D+ + D N +++ G I + R E+G + + D +
Sbjct: 140 DKDKQL---------TIDDRIKLINFDLDAGADYVIIEGR------ESGKGIGLFDKEGK 184
Query: 220 CKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLEC 278
K + D++AK + + K +FEA FI ++G VNL + +V+ LE
Sbjct: 185 VKENE---LDVLAK---NVDINKVIFEAPQKSQQVAFILKFGSSVNLANIAFDEVISLET 238
Query: 279 ----LRGRNLGK 286
LRG GK
Sbjct: 239 LRRGLRGDTFGK 250
>sp|O06739|PSLS_BACSU Phosphosulfolactate synthase OS=Bacillus subtilis (strain 168)
GN=yitD PE=1 SV=1
Length = 252
Score = 37.7 bits (86), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 113/273 (41%), Gaps = 50/273 (18%)
Query: 17 RAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVV 76
R KPR G + + Y L +D ++D +KF G+ SL+ K +EE +
Sbjct: 11 RTNKPRETGQSILIDNGYPL----QFFKDAIAGASDYIDFVKFGWGT-SLLTKD-LEEKI 64
Query: 77 KRAHQHDVYVSTGD--WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLR 134
+HD+ G + +++ + + F Y C G + IE++ G+L + +
Sbjct: 65 STLKEHDITFFFGGTLFEKYVSQKKVNEFHRY---CTYFGCEYIEISNGTLPMTNKEKAA 121
Query: 135 YVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVG 194
Y+ +F V+ S++ S +D A R + + +L E
Sbjct: 122 YIA-------DFSDEFLVL---SEVGS-KDAEL------ASRQSSEEWLEYIVE------ 158
Query: 195 INKSRRAERCLEAGADMIMIDSDD-----VCKHADSLRADIIAKVIGRLGL-EKTMFEAT 248
+EAGA+ ++ ++ + +C + +R I+ +I + +FEA
Sbjct: 159 ---------DMEAGAEKVITEARESGTGGICSSSGDVRFQIVDDIISSDIDINRLIFEAP 209
Query: 249 NPRTSEWFIRRYGPKVNLF-VDHSQVMDLECLR 280
N + FI++ GP VNL + + LE LR
Sbjct: 210 NKTLQQGFIQKIGPNVNLANIPFHDAIALETLR 242
>sp|Q8Z0Q9|GLGA2_NOSS1 Probable glycogen synthase 2 OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=glgA2 PE=3 SV=1
Length = 492
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 179 DKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-DVC--KHADSLRADIIAKVI 235
+K FL SNP++ + +G N+ + AGADMI++ S+ + C L+ + V
Sbjct: 349 EKQFLNSNPDVHLELGFNE--ELSHLIYAGADMIVVPSNYEPCGLTQMIGLKYGTVPIVR 406
Query: 236 GRLGLEKTMFE 246
G GL T+F+
Sbjct: 407 GVGGLVNTVFD 417
>sp|Q2JNM6|GLGA1_SYNJB Glycogen synthase 1 OS=Synechococcus sp. (strain JA-2-3B'a(2-13))
GN=glgA1 PE=3 SV=1
Length = 491
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 10/89 (11%)
Query: 161 SDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-DV 219
S +R GA+ A +K +L +NP++ + +G N+ + AGAD+I++ S +
Sbjct: 336 SATERGIGAWFAH-----EKSYLNNNPDVHIELGFNEE--LSHLIYAGADIIVVPSHYEP 388
Query: 220 C--KHADSLRADIIAKVIGRLGLEKTMFE 246
C L+ + V G GL T+F+
Sbjct: 389 CGLTQMIGLKYGTVPVVRGVGGLVDTVFD 417
>sp|Q3M9U1|GLGA1_ANAVT Glycogen synthase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC
7937) GN=glgA1 PE=3 SV=1
Length = 492
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 179 DKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-DVC--KHADSLRADIIAKVI 235
+K FL +NP++ + +G N+ + AGADMI++ S+ + C L+ + V
Sbjct: 349 EKQFLNNNPDVHLELGFNE--ELSHLIYAGADMIVVPSNYEPCGLTQMIGLKYGTVPIVR 406
Query: 236 GRLGLEKTMFE 246
G GL T+F+
Sbjct: 407 GVGGLVNTVFD 417
>sp|A3CLH1|Y583_STRSV UPF0348 protein SSA_0583 OS=Streptococcus sanguinis (strain SK36)
GN=SSA_0583 PE=3 SV=1
Length = 364
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 195 INKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSE 254
++K RA+ LEAGAD+++ V A A ++ RLG++ MF E
Sbjct: 45 VDKWTRAQMALEAGADLVLELPFLVSVQAADFFAKGAVDILERLGIDYLMFGTEEVLDYE 104
Query: 255 WFIRRYGPK 263
+ YG K
Sbjct: 105 SISKVYGEK 113
>sp|Q6P7H4|NIPA_XENLA NIPA-like protein OS=Xenopus laevis GN=zc3hc1 PE=2 SV=1
Length = 477
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 72 IEEVVKRAHQHDVYVSTGDWAEH----LIRNGPSAFKEYVEDCKQVGFDTIEL------N 121
++E +++AH+ + EH L+ S ++VE + ++L +
Sbjct: 137 LQEALRKAHEKFCFWPDSPCPEHFWALLVTEPSSVLSDFVERFHNLCHLEMQLPSLKHED 196
Query: 122 VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSD 162
V S++I E+T+ R +RL++ + KPK N +PSD
Sbjct: 197 VKSMDITEDTVSRLLRLIED---ELKPKEGREANSHSLPSD 234
>sp|Q73P36|DPO4_TREDE DNA polymerase IV OS=Treponema denticola (strain ATCC 35405 / CIP
103919 / DSM 14222) GN=dinB PE=3 SV=1
Length = 395
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 101 SAFKEYVEDCKQVGFDTIELNVGSLE----IPEETLLRYVRLVK-SAGLKAKPKFAVMFN 155
S FK++ + KQ+ D LN+ +E P+ + L + +K GL A
Sbjct: 90 SIFKDFTPEIKQISVDEAFLNMTGMEKIFGTPKNSALLLKKTIKEETGLTVSVGCAQNKY 149
Query: 156 KSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEV-GVGINKSRRAERCLEAG 208
+ I S R + G ++ +A D F+ S P +V GVG K+R ER + AG
Sbjct: 150 IAKIASGRSKPDGLFIVKAGEEID--FMKSLPLKDVWGVG-GKTR--ERLIAAG 198
>sp|A7IDU6|HOA_XANP2 4-hydroxy-2-oxovalerate aldolase OS=Xanthobacter autotrophicus
(strain ATCC BAA-1158 / Py2) GN=Xaut_0938 PE=3 SV=1
Length = 344
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Query: 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDR 163
++++E +++G DT + + IP E L RL++S G A+ + + +P D
Sbjct: 123 RQHIEAARELGMDTATFLMMAHMIPPEALAEQARLMESYG--AECVYVTDSAGALLPED- 179
Query: 164 DRAFGAYVARAPRSTDKLFLASNPEIEVGV 193
Y AR D L PE E+GV
Sbjct: 180 ------YTARVKTLRDAL----RPETEIGV 199
>sp|Q9AF21|PSLS_XANP2 Phosphosulfolactate synthase OS=Xanthobacter autotrophicus (strain
ATCC BAA-1158 / Py2) GN=xecG PE=3 SV=2
Length = 303
Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 59/129 (45%), Gaps = 7/129 (5%)
Query: 17 RAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVV 76
R +PR+ G+T + ++ L DI ++D K + G+ +LMP + + +
Sbjct: 24 RVTQPRKRGITMVIDKGIGPAA----LADIDAVAAPYIDHWKLAFGTSALMPPQVLADKL 79
Query: 77 KRAHQHDVYV-STGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRY 135
+ V G E + + +++ +++GF +E++ G++++P + R
Sbjct: 80 AFLRERGVLTYPGGTLLEAAVVQ--QHCRVFMQRAEELGFTAVEISDGTIDLPRDRRRRI 137
Query: 136 VRLVKSAGL 144
+ + AGL
Sbjct: 138 IDCAREAGL 146
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,350,602
Number of Sequences: 539616
Number of extensions: 4679320
Number of successful extensions: 11878
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 11872
Number of HSP's gapped (non-prelim): 18
length of query: 299
length of database: 191,569,459
effective HSP length: 117
effective length of query: 182
effective length of database: 128,434,387
effective search space: 23375058434
effective search space used: 23375058434
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)