Query 022296
Match_columns 299
No_of_seqs 116 out of 175
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 02:26:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022296.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022296hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02679 ComA: (2R)-phospho-3- 100.0 8.3E-93 1.8E-97 653.6 17.3 237 13-286 1-244 (244)
2 TIGR03849 arch_ComA phosphosul 100.0 7.8E-87 1.7E-91 611.4 21.9 226 26-288 1-234 (237)
3 COG1809 (2R)-phospho-3-sulfola 100.0 1.1E-81 2.4E-86 570.3 15.8 244 8-288 1-253 (258)
4 PRK08195 4-hyroxy-2-oxovalerat 97.4 0.0055 1.2E-07 59.6 14.5 167 24-240 78-246 (337)
5 PRK13209 L-xylulose 5-phosphat 97.2 0.0041 8.9E-08 57.2 11.7 159 90-274 11-192 (283)
6 TIGR03217 4OH_2_O_val_ald 4-hy 97.2 0.011 2.5E-07 57.3 14.6 167 24-240 77-245 (333)
7 cd07937 DRE_TIM_PC_TC_5S Pyruv 97.0 0.017 3.7E-07 54.3 13.7 164 32-239 83-248 (275)
8 cd07939 DRE_TIM_NifV Streptomy 97.0 0.008 1.7E-07 55.7 11.0 152 44-238 73-237 (259)
9 cd07943 DRE_TIM_HOA 4-hydroxy- 96.9 0.034 7.4E-07 51.6 14.0 165 24-239 75-241 (263)
10 PF00682 HMGL-like: HMGL-like 96.8 0.013 2.8E-07 52.9 10.8 156 41-238 67-236 (237)
11 cd03174 DRE_TIM_metallolyase D 96.8 0.0064 1.4E-07 55.1 8.7 153 42-239 79-246 (265)
12 PRK06294 coproporphyrinogen II 96.6 0.015 3.3E-07 56.7 10.4 121 52-214 57-189 (370)
13 PRK08446 coproporphyrinogen II 96.6 0.024 5.2E-07 54.9 11.4 123 53-215 51-185 (350)
14 cd07944 DRE_TIM_HOA_like 4-hyd 96.5 0.022 4.7E-07 53.5 10.3 163 24-236 72-236 (266)
15 PRK13210 putative L-xylulose 5 96.5 0.068 1.5E-06 48.9 13.3 158 90-273 6-186 (284)
16 cd03174 DRE_TIM_metallolyase D 96.4 0.099 2.1E-06 47.4 13.8 141 44-237 25-183 (265)
17 PRK13813 orotidine 5'-phosphat 96.3 0.046 9.9E-07 48.9 10.6 37 39-75 14-50 (215)
18 PRK05628 coproporphyrinogen II 96.3 0.037 8.1E-07 53.8 10.9 124 52-214 58-194 (375)
19 TIGR00542 hxl6Piso_put hexulos 96.2 0.073 1.6E-06 49.1 11.9 156 92-273 8-186 (279)
20 cd07940 DRE_TIM_IPMS 2-isoprop 96.1 0.11 2.5E-06 48.3 12.4 158 42-239 74-245 (268)
21 cd07937 DRE_TIM_PC_TC_5S Pyruv 96.0 0.11 2.4E-06 48.9 12.0 151 43-238 26-187 (275)
22 TIGR00736 nifR3_rel_arch TIM-b 96.0 0.17 3.8E-06 47.1 13.1 135 39-223 78-227 (231)
23 TIGR03128 RuMP_HxlA 3-hexulose 96.0 0.56 1.2E-05 41.4 15.8 96 39-149 10-108 (206)
24 PRK05660 HemN family oxidoredu 96.0 0.047 1E-06 53.5 9.7 125 52-213 57-192 (378)
25 PRK11858 aksA trans-homoaconit 96.0 0.13 2.8E-06 50.6 12.8 149 42-236 80-241 (378)
26 TIGR00538 hemN oxygen-independ 95.8 0.056 1.2E-06 54.1 9.7 127 53-216 102-239 (455)
27 TIGR02660 nifV_homocitr homoci 95.7 0.16 3.4E-06 49.7 12.3 147 51-240 83-243 (365)
28 PRK05904 coproporphyrinogen II 95.7 0.13 2.9E-06 50.1 11.6 151 52-242 55-230 (353)
29 PRK07379 coproporphyrinogen II 95.7 0.11 2.3E-06 51.4 11.1 125 52-213 65-200 (400)
30 TIGR00539 hemN_rel putative ox 95.7 0.068 1.5E-06 51.8 9.4 125 53-215 51-187 (360)
31 PLN02746 hydroxymethylglutaryl 95.6 0.21 4.5E-06 49.2 12.4 157 40-239 124-303 (347)
32 PRK05692 hydroxymethylglutaryl 95.6 0.26 5.5E-06 47.0 12.7 147 51-239 90-261 (287)
33 cd00408 DHDPS-like Dihydrodipi 95.5 0.25 5.3E-06 45.8 12.3 147 101-285 18-197 (281)
34 PRK13347 coproporphyrinogen II 95.5 0.19 4.1E-06 50.4 12.1 126 53-216 103-240 (453)
35 cd07941 DRE_TIM_LeuA3 Desulfob 95.5 0.33 7.2E-06 45.6 13.0 145 51-236 89-248 (273)
36 PRK08208 coproporphyrinogen II 95.5 0.14 3.1E-06 51.0 11.1 127 54-216 92-229 (430)
37 TIGR01212 radical SAM protein, 95.4 0.29 6.2E-06 46.7 12.5 151 57-246 81-259 (302)
38 cd00950 DHDPS Dihydrodipicolin 95.4 0.21 4.5E-06 46.6 11.2 141 101-282 21-197 (284)
39 PRK03620 5-dehydro-4-deoxygluc 95.4 0.41 8.9E-06 45.5 13.4 145 102-285 29-207 (303)
40 PRK09249 coproporphyrinogen II 95.4 0.12 2.5E-06 51.9 10.1 127 53-216 102-239 (453)
41 PRK03170 dihydrodipicolinate s 95.3 0.3 6.4E-06 45.9 12.2 78 102-216 23-104 (292)
42 cd07948 DRE_TIM_HCS Saccharomy 95.3 0.25 5.4E-06 46.5 11.5 151 40-236 74-237 (262)
43 cd07945 DRE_TIM_CMS Leptospira 95.1 0.27 5.9E-06 46.6 11.2 150 42-235 79-243 (280)
44 COG0826 Collagenase and relate 95.1 0.57 1.2E-05 46.1 13.7 145 42-248 15-172 (347)
45 cd00951 KDGDH 5-dehydro-4-deox 94.9 0.57 1.2E-05 44.2 12.8 142 102-285 22-200 (289)
46 PRK01060 endonuclease IV; Prov 94.9 0.5 1.1E-05 43.4 12.1 148 102-273 13-183 (281)
47 TIGR01037 pyrD_sub1_fam dihydr 94.9 0.48 1E-05 44.6 12.2 76 42-125 107-193 (300)
48 TIGR02090 LEU1_arch isopropylm 94.9 0.55 1.2E-05 46.0 13.0 141 54-237 85-238 (363)
49 cd00377 ICL_PEPM Members of th 94.8 0.52 1.1E-05 43.8 12.0 123 102-261 85-219 (243)
50 TIGR03151 enACPred_II putative 94.8 0.32 7E-06 46.7 10.9 112 67-239 45-161 (307)
51 PRK12331 oxaloacetate decarbox 94.7 0.38 8.2E-06 48.9 11.7 164 32-241 88-255 (448)
52 PRK09856 fructoselysine 3-epim 94.7 0.76 1.7E-05 41.9 12.7 146 102-270 14-182 (275)
53 PRK05799 coproporphyrinogen II 94.6 0.41 9E-06 46.4 11.2 124 53-214 51-185 (374)
54 cd07944 DRE_TIM_HOA_like 4-hyd 94.5 1.3 2.9E-05 41.5 14.2 144 42-238 24-176 (266)
55 TIGR03249 KdgD 5-dehydro-4-deo 94.5 0.72 1.6E-05 43.6 12.4 144 101-283 26-203 (296)
56 cd07938 DRE_TIM_HMGL 3-hydroxy 94.5 0.84 1.8E-05 43.1 12.8 155 40-239 76-255 (274)
57 cd02911 arch_FMN Archeal FMN-b 94.4 0.6 1.3E-05 43.1 11.3 91 40-140 84-189 (233)
58 PF00682 HMGL-like: HMGL-like 94.3 0.32 6.9E-06 43.9 9.3 144 42-236 18-173 (237)
59 PRK08207 coproporphyrinogen II 94.3 0.52 1.1E-05 48.2 11.7 128 52-216 217-357 (488)
60 TIGR01108 oadA oxaloacetate de 94.3 0.75 1.6E-05 48.2 13.0 156 42-240 92-249 (582)
61 PRK09057 coproporphyrinogen II 94.2 0.25 5.4E-06 48.4 8.9 89 53-144 55-154 (380)
62 PRK12581 oxaloacetate decarbox 94.1 1.7 3.7E-05 44.6 14.9 154 42-240 106-263 (468)
63 PRK08599 coproporphyrinogen II 94.1 1.5 3.2E-05 42.6 14.0 89 53-145 51-151 (377)
64 TIGR02320 PEP_mutase phosphoen 94.1 0.92 2E-05 43.5 12.3 101 101-239 92-206 (285)
65 PRK01130 N-acetylmannosamine-6 94.0 1.5 3.2E-05 39.4 12.9 114 104-263 78-197 (221)
66 cd02810 DHOD_DHPD_FMN Dihydroo 94.0 0.69 1.5E-05 43.0 11.1 79 41-125 111-200 (289)
67 PRK09282 pyruvate carboxylase 93.9 0.97 2.1E-05 47.5 13.1 153 40-239 95-253 (592)
68 cd06547 GH85_ENGase Endo-beta- 93.9 0.23 5E-06 48.6 7.9 183 50-248 29-242 (339)
69 PF00701 DHDPS: Dihydrodipicol 93.8 1.7 3.7E-05 40.6 13.4 146 102-286 23-202 (289)
70 PRK13361 molybdenum cofactor b 93.8 0.77 1.7E-05 44.0 11.2 98 39-149 46-160 (329)
71 TIGR02668 moaA_archaeal probab 93.8 1 2.2E-05 42.1 11.8 101 39-152 41-157 (302)
72 PRK12344 putative alpha-isopro 93.7 0.96 2.1E-05 46.7 12.4 171 20-235 69-253 (524)
73 PRK00278 trpC indole-3-glycero 93.7 1.5 3.2E-05 41.1 12.7 111 107-266 126-238 (260)
74 PRK06582 coproporphyrinogen II 93.6 0.73 1.6E-05 45.6 10.9 88 52-142 61-159 (390)
75 TIGR03217 4OH_2_O_val_ald 4-hy 93.5 2.1 4.4E-05 41.8 13.8 141 42-238 28-181 (333)
76 smart00729 Elp3 Elongator prot 93.5 2.9 6.2E-05 35.1 13.0 88 54-148 52-155 (216)
77 COG1082 IolE Sugar phosphate i 93.5 1.9 4.2E-05 38.8 12.7 146 101-274 15-182 (274)
78 PRK04147 N-acetylneuraminate l 93.4 1.6 3.4E-05 41.2 12.4 144 101-280 24-177 (293)
79 TIGR02090 LEU1_arch isopropylm 93.4 1.9 4.1E-05 42.3 13.3 144 41-239 25-180 (363)
80 PRK07259 dihydroorotate dehydr 93.4 1.3 2.8E-05 41.8 11.8 78 41-125 104-193 (301)
81 PRK14042 pyruvate carboxylase 93.3 1.6 3.5E-05 46.0 13.3 171 23-241 75-255 (596)
82 TIGR03470 HpnH hopanoid biosyn 93.2 2.2 4.7E-05 41.0 13.2 99 39-152 60-171 (318)
83 PRK00915 2-isopropylmalate syn 93.2 1 2.2E-05 46.3 11.7 146 42-238 30-187 (513)
84 PRK14040 oxaloacetate decarbox 93.2 4.4 9.6E-05 42.7 16.4 151 42-239 98-254 (593)
85 PRK00311 panB 3-methyl-2-oxobu 93.2 0.45 9.7E-06 45.2 8.3 86 104-216 97-182 (264)
86 TIGR03234 OH-pyruv-isom hydrox 93.1 1.7 3.7E-05 39.3 11.8 43 102-148 15-57 (254)
87 PRK14041 oxaloacetate decarbox 93.1 1.7 3.6E-05 44.6 12.8 146 50-240 105-253 (467)
88 TIGR02666 moaA molybdenum cofa 93.0 3.6 7.8E-05 39.2 14.3 99 39-150 44-160 (334)
89 cd06557 KPHMT-like Ketopantoat 93.0 0.51 1.1E-05 44.6 8.4 86 104-216 94-179 (254)
90 TIGR02109 PQQ_syn_pqqE coenzym 93.0 2.9 6.3E-05 40.1 13.7 97 39-147 38-149 (358)
91 PRK14040 oxaloacetate decarbox 92.9 0.8 1.7E-05 48.1 10.4 96 102-238 98-193 (593)
92 TIGR02313 HpaI-NOT-DapA 2,4-di 92.8 1.8 4E-05 41.0 11.9 108 102-248 22-136 (294)
93 TIGR03551 F420_cofH 7,8-dideme 92.8 1.2 2.5E-05 43.1 10.8 110 39-148 71-197 (343)
94 PRK09058 coproporphyrinogen II 92.6 0.76 1.6E-05 46.2 9.6 124 53-214 114-249 (449)
95 PRK12330 oxaloacetate decarbox 92.5 1 2.2E-05 46.6 10.3 96 102-238 98-193 (499)
96 cd02801 DUS_like_FMN Dihydrour 92.5 1.5 3.3E-05 39.0 10.4 96 40-141 66-180 (231)
97 cd04743 NPD_PKS 2-Nitropropane 92.5 0.73 1.6E-05 45.0 8.9 114 42-217 18-132 (320)
98 PF03060 NMO: Nitronate monoox 92.4 1.6 3.6E-05 42.0 11.3 95 92-239 92-190 (330)
99 PRK12331 oxaloacetate decarbox 92.3 1 2.2E-05 45.8 10.0 96 102-238 97-192 (448)
100 COG0159 TrpA Tryptophan syntha 92.3 2.2 4.8E-05 40.8 11.7 149 39-237 29-199 (265)
101 PRK13397 3-deoxy-7-phosphohept 92.2 2.3 5E-05 40.3 11.7 139 50-240 95-249 (250)
102 PRK00164 moaA molybdenum cofac 92.2 2 4.2E-05 40.9 11.3 101 39-152 50-167 (331)
103 PRK05301 pyrroloquinoline quin 91.9 3 6.5E-05 40.4 12.5 100 39-150 47-161 (378)
104 TIGR00683 nanA N-acetylneurami 91.8 3 6.4E-05 39.6 12.0 144 101-280 21-175 (290)
105 PRK00915 2-isopropylmalate syn 91.7 1.6 3.5E-05 44.9 10.8 142 54-236 93-249 (513)
106 cd04724 Tryptophan_synthase_al 91.6 5 0.00011 37.1 13.0 103 39-148 12-134 (242)
107 TIGR03128 RuMP_HxlA 3-hexulose 91.5 5.5 0.00012 35.1 12.8 69 42-124 68-136 (206)
108 TIGR00262 trpA tryptophan synt 91.5 12 0.00027 35.0 17.1 176 39-264 22-223 (256)
109 PRK10076 pyruvate formate lyas 91.3 0.86 1.9E-05 41.7 7.6 48 83-137 41-88 (213)
110 TIGR02660 nifV_homocitr homoci 91.2 3.1 6.8E-05 40.7 11.8 141 41-238 26-180 (365)
111 PLN02417 dihydrodipicolinate s 91.2 0.39 8.5E-06 45.2 5.4 78 101-217 22-105 (280)
112 cd04738 DHOD_2_like Dihydrooro 91.1 1.4 3.1E-05 42.3 9.3 79 41-127 148-242 (327)
113 cd04726 KGPDC_HPS 3-Keto-L-gul 91.1 2.4 5.2E-05 37.0 10.0 92 39-145 11-105 (202)
114 PRK07094 biotin synthase; Prov 91.1 8.2 0.00018 36.5 14.2 89 53-152 86-187 (323)
115 TIGR02321 Pphn_pyruv_hyd phosp 91.0 5 0.00011 38.6 12.8 134 70-247 62-213 (290)
116 PRK12330 oxaloacetate decarbox 91.0 3.7 8E-05 42.5 12.6 172 24-241 77-258 (499)
117 cd04740 DHOD_1B_like Dihydroor 91.0 4.4 9.5E-05 38.0 12.2 78 41-125 102-190 (296)
118 TIGR00674 dapA dihydrodipicoli 90.9 2.1 4.6E-05 40.1 10.0 144 102-285 20-198 (285)
119 cd00952 CHBPH_aldolase Trans-o 90.9 2.8 6E-05 40.1 10.9 124 101-261 29-160 (309)
120 PRK09282 pyruvate carboxylase 90.9 1.7 3.7E-05 45.7 10.2 96 102-238 97-192 (592)
121 TIGR02317 prpB methylisocitrat 90.8 2.4 5.2E-05 40.7 10.3 123 71-239 61-197 (285)
122 COG0084 TatD Mg-dependent DNas 90.8 8.1 0.00017 36.6 13.7 170 20-250 25-207 (256)
123 PLN03228 methylthioalkylmalate 90.7 2.8 6.1E-05 43.4 11.4 145 54-237 182-340 (503)
124 PRK09389 (R)-citramalate synth 90.7 2.8 6.1E-05 43.0 11.4 150 42-237 78-240 (488)
125 TIGR02319 CPEP_Pphonmut carbox 90.6 2.9 6.3E-05 40.4 10.8 125 70-240 64-202 (294)
126 TIGR00222 panB 3-methyl-2-oxob 90.6 2.7 5.9E-05 40.1 10.4 91 92-216 91-181 (263)
127 PRK05692 hydroxymethylglutaryl 90.5 1.8 4E-05 41.2 9.2 97 107-238 85-193 (287)
128 PLN02746 hydroxymethylglutaryl 90.4 2 4.4E-05 42.4 9.6 150 41-238 71-235 (347)
129 PRK10812 putative DNAse; Provi 90.3 9.2 0.0002 35.9 13.7 169 22-251 30-208 (265)
130 TIGR00973 leuA_bact 2-isopropy 90.3 5 0.00011 41.2 12.8 142 54-236 90-246 (494)
131 TIGR00737 nifR3_yhdG putative 90.0 2 4.3E-05 41.0 9.1 97 40-141 74-189 (319)
132 cd04731 HisF The cyclase subun 89.9 2.5 5.5E-05 38.4 9.4 102 25-141 71-190 (243)
133 cd00954 NAL N-Acetylneuraminic 89.9 3.7 8.1E-05 38.6 10.8 112 102-249 22-138 (288)
134 PRK13111 trpA tryptophan synth 89.8 1 2.2E-05 42.5 6.9 105 39-150 24-149 (258)
135 cd04729 NanE N-acetylmannosami 89.7 2.8 6.1E-05 37.6 9.4 89 105-238 83-176 (219)
136 cd07947 DRE_TIM_Re_CS Clostrid 89.7 7.5 0.00016 37.0 12.6 155 40-238 77-258 (279)
137 cd06556 ICL_KPHMT Members of t 89.6 2.7 5.8E-05 39.3 9.4 98 107-240 95-192 (240)
138 TIGR02495 NrdG2 anaerobic ribo 89.5 4 8.8E-05 35.3 10.0 98 39-147 48-157 (191)
139 TIGR01361 DAHP_synth_Bsub phos 89.4 4.6 0.0001 38.0 10.9 136 51-238 106-257 (260)
140 COG2896 MoaA Molybdenum cofact 89.3 4.9 0.00011 39.5 11.3 134 39-217 44-189 (322)
141 PRK12581 oxaloacetate decarbox 89.1 2.9 6.3E-05 43.0 10.0 168 28-238 19-201 (468)
142 TIGR01108 oadA oxaloacetate de 89.1 3 6.4E-05 43.8 10.3 96 102-238 92-187 (582)
143 smart00518 AP2Ec AP endonuclea 89.1 6.6 0.00014 35.8 11.5 141 102-273 11-177 (273)
144 COG0157 NadC Nicotinate-nucleo 89.1 1.8 3.9E-05 41.8 7.9 118 72-249 113-241 (280)
145 PRK08649 inosine 5-monophospha 89.0 3.1 6.8E-05 41.3 9.9 68 70-145 118-189 (368)
146 PLN02951 Molybderin biosynthes 89.0 12 0.00027 36.8 14.0 101 39-152 91-208 (373)
147 PRK14041 oxaloacetate decarbox 89.0 3.5 7.5E-05 42.3 10.4 96 102-238 96-191 (467)
148 TIGR01211 ELP3 histone acetylt 88.9 3.1 6.7E-05 43.2 10.1 105 46-150 126-262 (522)
149 PRK08195 4-hyroxy-2-oxovalerat 88.8 3.4 7.3E-05 40.3 9.9 91 105-238 92-182 (337)
150 cd00331 IGPS Indole-3-glycerol 88.8 3.4 7.3E-05 36.9 9.2 25 198-223 184-208 (217)
151 cd07943 DRE_TIM_HOA 4-hydroxy- 88.8 3.8 8.2E-05 38.1 9.7 91 105-238 89-179 (263)
152 cd04730 NPD_like 2-Nitropropan 88.7 3.5 7.6E-05 36.9 9.3 81 47-145 22-104 (236)
153 cd00019 AP2Ec AP endonuclease 88.7 1.4 3.1E-05 40.5 6.9 144 102-273 11-180 (279)
154 PRK11449 putative deoxyribonuc 88.6 21 0.00045 33.3 14.7 167 22-250 29-209 (258)
155 cd04732 HisA HisA. Phosphorib 88.5 2.2 4.8E-05 38.2 7.8 97 102-246 30-127 (234)
156 cd04740 DHOD_1B_like Dihydroor 88.5 3.1 6.7E-05 39.0 9.1 41 102-142 103-152 (296)
157 cd07939 DRE_TIM_NifV Streptomy 88.5 3.5 7.7E-05 38.2 9.3 142 40-238 22-177 (259)
158 PLN02321 2-isopropylmalate syn 88.4 5.3 0.00012 42.5 11.6 141 56-237 185-341 (632)
159 cd07948 DRE_TIM_HCS Saccharomy 88.4 8 0.00017 36.4 11.7 143 41-238 25-179 (262)
160 cd02803 OYE_like_FMN_family Ol 88.2 1 2.2E-05 42.6 5.7 40 102-141 229-278 (327)
161 PRK11858 aksA trans-homoaconit 88.2 15 0.00033 36.2 14.1 142 42-238 30-183 (378)
162 cd02810 DHOD_DHPD_FMN Dihydroo 87.9 3.1 6.7E-05 38.7 8.7 79 102-217 112-198 (289)
163 PRK06015 keto-hydroxyglutarate 87.6 6.5 0.00014 36.0 10.3 123 39-222 39-178 (201)
164 PRK12344 putative alpha-isopro 87.5 5.6 0.00012 41.2 11.0 153 42-238 31-196 (524)
165 PRK10415 tRNA-dihydrouridine s 87.4 3.3 7.2E-05 39.9 8.8 80 56-141 105-191 (321)
166 PRK11320 prpB 2-methylisocitra 87.4 3.3 7.1E-05 40.0 8.7 116 78-239 73-202 (292)
167 PRK05286 dihydroorotate dehydr 87.4 1.8 3.8E-05 42.2 6.9 79 40-126 156-250 (344)
168 PLN02591 tryptophan synthase 87.2 1.8 3.9E-05 40.8 6.6 107 39-152 14-140 (250)
169 PLN03228 methylthioalkylmalate 87.0 5.2 0.00011 41.4 10.4 152 41-238 109-277 (503)
170 PRK05718 keto-hydroxyglutarate 87.0 1.5 3.2E-05 40.3 5.8 116 74-245 7-134 (212)
171 cd00331 IGPS Indole-3-glycerol 86.9 21 0.00046 31.8 13.1 124 83-264 72-197 (217)
172 PRK07259 dihydroorotate dehydr 86.5 4 8.7E-05 38.5 8.6 74 102-214 105-188 (301)
173 PLN02424 ketopantoate hydroxym 86.5 3.9 8.4E-05 40.4 8.7 84 107-216 120-203 (332)
174 COG3623 SgaU Putative L-xylulo 86.5 1.5 3.2E-05 41.9 5.6 58 91-149 9-73 (287)
175 PF04055 Radical_SAM: Radical 86.3 7.3 0.00016 31.2 9.0 96 39-146 29-143 (166)
176 cd02940 DHPD_FMN Dihydropyrimi 86.1 5 0.00011 38.1 9.1 58 62-126 146-205 (299)
177 PRK02083 imidazole glycerol ph 86.0 10 0.00022 34.8 10.9 102 25-141 74-194 (253)
178 TIGR03699 mena_SCO4550 menaqui 85.9 6.1 0.00013 37.9 9.6 111 39-150 73-201 (340)
179 PRK13398 3-deoxy-7-phosphohept 85.7 14 0.0003 35.1 11.8 41 198-238 214-259 (266)
180 CHL00200 trpA tryptophan synth 85.6 13 0.00028 35.2 11.5 106 39-151 27-152 (263)
181 PRK12999 pyruvate carboxylase; 85.6 8.7 0.00019 43.5 11.9 159 39-240 625-791 (1146)
182 PRK09989 hypothetical protein; 85.0 1.7 3.6E-05 39.7 5.1 42 102-147 16-57 (258)
183 PF00215 OMPdecase: Orotidine 85.0 2.1 4.5E-05 38.8 5.7 97 39-143 11-111 (226)
184 PRK09389 (R)-citramalate synth 84.8 14 0.0003 38.0 12.1 143 42-239 28-182 (488)
185 PRK01130 N-acetylmannosamine-6 84.8 6.2 0.00013 35.4 8.6 97 70-221 105-207 (221)
186 cd02801 DUS_like_FMN Dihydrour 84.6 13 0.00028 33.0 10.6 101 100-236 66-180 (231)
187 PRK04302 triosephosphate isome 84.6 9.6 0.00021 34.5 9.9 46 103-148 74-119 (223)
188 PRK08898 coproporphyrinogen II 84.6 13 0.00028 36.7 11.5 89 52-143 72-171 (394)
189 PRK13957 indole-3-glycerol-pho 84.5 10 0.00022 36.0 10.1 110 107-266 117-228 (247)
190 cd00953 KDG_aldolase KDG (2-ke 84.4 5.7 0.00012 37.4 8.6 122 99-261 18-146 (279)
191 PF09370 TIM-br_sig_trns: TIM- 84.1 5 0.00011 38.5 8.0 47 102-148 96-155 (268)
192 cd04722 TIM_phosphate_binding 83.7 21 0.00047 29.5 11.0 96 42-142 13-111 (200)
193 cd07940 DRE_TIM_IPMS 2-isoprop 83.7 8.5 0.00018 35.8 9.3 140 42-238 24-181 (268)
194 cd02932 OYE_YqiM_FMN Old yello 83.6 2.2 4.7E-05 41.1 5.4 40 102-141 242-287 (336)
195 PRK07028 bifunctional hexulose 83.6 24 0.00051 35.2 12.9 52 199-252 174-229 (430)
196 cd02803 OYE_like_FMN_family Ol 83.3 18 0.0004 34.1 11.5 24 191-217 227-250 (327)
197 PLN02446 (5-phosphoribosyl)-5- 83.2 2.1 4.6E-05 40.8 5.1 48 198-247 94-141 (262)
198 PRK06801 hypothetical protein; 82.9 39 0.00084 32.6 13.6 174 42-247 5-211 (286)
199 PF01261 AP_endonuc_2: Xylose 82.9 6.7 0.00014 33.2 7.7 148 107-276 1-171 (213)
200 PRK13307 bifunctional formalde 82.9 15 0.00032 37.0 11.1 37 199-238 342-378 (391)
201 PF00218 IGPS: Indole-3-glycer 82.9 10 0.00022 36.0 9.5 115 103-266 119-236 (254)
202 PRK09722 allulose-6-phosphate 82.9 14 0.00031 34.4 10.3 37 198-235 180-216 (229)
203 cd00946 FBP_aldolase_IIA Class 82.8 30 0.00065 34.4 13.1 131 74-234 78-230 (345)
204 PRK07114 keto-hydroxyglutarate 82.8 5 0.00011 37.3 7.3 91 75-216 8-99 (222)
205 PRK15452 putative protease; Pr 82.8 27 0.00059 35.6 13.1 88 39-142 12-107 (443)
206 PRK08091 ribulose-phosphate 3- 82.6 12 0.00027 34.9 9.9 58 27-94 68-133 (228)
207 TIGR00736 nifR3_rel_arch TIM-b 82.6 22 0.00048 33.2 11.5 120 68-238 53-189 (231)
208 TIGR00587 nfo apurinic endonuc 82.5 19 0.0004 33.6 11.1 148 102-272 12-180 (274)
209 PF13714 PEP_mutase: Phosphoen 82.5 4 8.6E-05 38.1 6.6 128 69-239 55-191 (238)
210 PRK12677 xylose isomerase; Pro 82.5 6.3 0.00014 39.2 8.4 46 102-147 32-84 (384)
211 TIGR00423 radical SAM domain p 82.5 14 0.00031 35.0 10.5 110 39-148 37-163 (309)
212 COG1797 CobB Cobyrinic acid a, 82.4 8.7 0.00019 39.4 9.4 120 133-274 19-152 (451)
213 PRK13802 bifunctional indole-3 82.2 16 0.00035 39.4 11.7 111 107-266 126-238 (695)
214 PRK09997 hydroxypyruvate isome 82.2 1.9 4.1E-05 39.3 4.3 48 95-148 11-58 (258)
215 smart00642 Aamy Alpha-amylase 82.0 3.4 7.5E-05 36.2 5.7 49 105-153 23-93 (166)
216 PRK13523 NADPH dehydrogenase N 81.6 27 0.00059 34.1 12.2 24 191-217 226-249 (337)
217 PF01212 Beta_elim_lyase: Beta 81.5 4.1 8.8E-05 38.9 6.4 78 39-122 107-193 (290)
218 PRK14042 pyruvate carboxylase 81.5 13 0.00028 39.5 10.5 97 101-238 96-192 (596)
219 cd01335 Radical_SAM Radical SA 81.5 20 0.00042 29.4 9.8 99 42-152 33-147 (204)
220 TIGR00977 LeuA_rel 2-isopropyl 81.2 17 0.00036 37.9 11.1 119 73-232 125-247 (526)
221 cd07942 DRE_TIM_LeuA Mycobacte 81.2 23 0.0005 33.9 11.4 159 43-239 81-265 (284)
222 PRK08446 coproporphyrinogen II 81.1 7.6 0.00016 37.7 8.2 116 27-145 54-180 (350)
223 PRK12999 pyruvate carboxylase; 81.0 13 0.00029 42.1 11.1 102 102-238 628-729 (1146)
224 PF00290 Trp_syntA: Tryptophan 80.7 26 0.00056 33.3 11.4 112 31-152 17-149 (259)
225 cd00947 TBP_aldolase_IIB Tagat 80.4 57 0.0012 31.3 14.2 134 105-267 83-226 (276)
226 smart00481 POLIIIAc DNA polyme 80.2 4 8.8E-05 29.8 4.7 45 101-148 15-59 (67)
227 cd02930 DCR_FMN 2,4-dienoyl-Co 80.1 22 0.00048 34.5 11.1 21 191-214 223-243 (353)
228 PRK08745 ribulose-phosphate 3- 80.1 23 0.0005 32.8 10.7 35 198-235 182-216 (223)
229 PRK10425 DNase TatD; Provision 80.1 53 0.0011 30.8 14.1 170 22-251 25-206 (258)
230 PRK10415 tRNA-dihydrouridine s 79.8 22 0.00048 34.3 10.9 95 107-238 83-193 (321)
231 TIGR00973 leuA_bact 2-isopropy 79.8 20 0.00043 36.9 11.1 146 42-238 27-184 (494)
232 PRK09195 gatY tagatose-bisphos 79.6 61 0.0013 31.2 14.2 196 42-267 5-232 (284)
233 PF04476 DUF556: Protein of un 79.6 10 0.00022 35.8 8.2 144 42-238 69-234 (235)
234 PRK15108 biotin synthase; Prov 79.6 11 0.00024 36.8 8.8 131 66-235 75-207 (345)
235 TIGR00126 deoC deoxyribose-pho 79.5 15 0.00033 33.8 9.2 76 39-129 16-98 (211)
236 cd04739 DHOD_like Dihydroorota 79.5 31 0.00067 33.3 11.8 26 102-127 176-201 (325)
237 COG0329 DapA Dihydrodipicolina 79.3 41 0.00089 32.2 12.4 143 102-280 26-177 (299)
238 COG2513 PrpB PEP phosphonomuta 79.2 15 0.00032 35.8 9.3 124 70-239 65-202 (289)
239 PRK08185 hypothetical protein; 79.2 61 0.0013 31.2 13.5 174 58-267 43-228 (283)
240 PRK14024 phosphoribosyl isomer 79.1 26 0.00057 32.2 10.7 101 25-142 75-188 (241)
241 PRK04302 triosephosphate isome 79.0 29 0.00064 31.4 10.9 18 200-217 187-204 (223)
242 cd02874 GH18_CFLE_spore_hydrol 78.8 7.1 0.00015 36.8 7.0 93 45-141 17-128 (313)
243 PRK05985 cytosine deaminase; P 78.8 10 0.00022 36.7 8.3 77 69-149 190-271 (391)
244 PRK07565 dihydroorotate dehydr 78.7 31 0.00068 33.2 11.5 26 102-127 178-203 (334)
245 PRK10550 tRNA-dihydrouridine s 78.5 12 0.00027 36.1 8.7 78 58-142 105-192 (312)
246 TIGR00735 hisF imidazoleglycer 78.4 26 0.00056 32.4 10.5 99 102-248 31-130 (254)
247 PRK05926 hypothetical protein; 78.4 25 0.00054 34.9 10.9 90 59-148 120-225 (370)
248 PRK13585 1-(5-phosphoribosyl)- 78.2 13 0.00027 33.7 8.2 97 102-246 33-130 (241)
249 PRK02083 imidazole glycerol ph 78.2 16 0.00034 33.6 8.9 99 102-248 31-130 (253)
250 PRK13523 NADPH dehydrogenase N 77.8 2.5 5.5E-05 41.2 3.8 119 70-241 193-325 (337)
251 PF01301 Glyco_hydro_35: Glyco 77.7 5.1 0.00011 38.7 5.8 53 100-152 23-85 (319)
252 cd00959 DeoC 2-deoxyribose-5-p 77.6 5.4 0.00012 35.7 5.6 79 39-126 15-94 (203)
253 cd04731 HisF The cyclase subun 77.5 25 0.00054 32.0 10.0 96 102-248 28-127 (243)
254 PTZ00170 D-ribulose-5-phosphat 77.5 27 0.00059 32.0 10.3 80 30-118 68-154 (228)
255 cd04739 DHOD_like Dihydroorota 77.4 11 0.00025 36.3 8.1 77 102-217 113-197 (325)
256 cd06543 GH18_PF-ChiA-like PF-C 77.2 6.6 0.00014 37.7 6.4 74 69-142 53-136 (294)
257 PTZ00170 D-ribulose-5-phosphat 77.2 25 0.00055 32.3 10.0 77 99-217 17-97 (228)
258 TIGR01182 eda Entner-Doudoroff 77.2 7.2 0.00016 35.8 6.3 36 102-142 21-56 (204)
259 cd02933 OYE_like_FMN Old yello 76.9 60 0.0013 31.6 12.9 22 191-215 240-261 (338)
260 PRK00125 pyrF orotidine 5'-pho 76.8 11 0.00024 36.1 7.8 94 42-143 42-141 (278)
261 PRK13585 1-(5-phosphoribosyl)- 76.3 27 0.00059 31.5 9.8 25 200-225 207-231 (241)
262 PRK05286 dihydroorotate dehydr 76.2 17 0.00036 35.4 9.0 80 102-217 155-247 (344)
263 PRK14057 epimerase; Provisiona 76.0 16 0.00034 34.8 8.5 69 27-111 75-156 (254)
264 COG1105 FruK Fructose-1-phosph 76.0 23 0.0005 34.7 9.7 177 26-242 101-308 (310)
265 TIGR03581 EF_0839 conserved hy 75.8 31 0.00066 32.7 10.0 95 103-237 137-233 (236)
266 PF04131 NanE: Putative N-acet 75.7 13 0.00027 34.2 7.4 117 39-216 53-174 (192)
267 TIGR01210 conserved hypothetic 75.7 31 0.00066 33.2 10.5 78 65-152 83-177 (313)
268 PRK08318 dihydropyrimidine deh 75.7 31 0.00068 34.2 10.9 60 60-126 144-205 (420)
269 PRK07998 gatY putative fructos 75.6 80 0.0017 30.5 13.9 189 42-267 5-229 (283)
270 TIGR01740 pyrF orotidine 5'-ph 75.6 11 0.00024 34.0 7.1 93 39-143 9-102 (213)
271 PRK13587 1-(5-phosphoribosyl)- 75.6 41 0.00088 31.1 10.9 114 23-152 74-201 (234)
272 PRK09250 fructose-bisphosphate 75.2 31 0.00067 34.4 10.5 85 56-143 129-230 (348)
273 PRK08445 hypothetical protein; 75.1 29 0.00062 34.0 10.3 100 50-149 86-201 (348)
274 PRK13586 1-(5-phosphoribosyl)- 74.9 24 0.00053 32.6 9.3 93 105-245 34-126 (232)
275 PRK10550 tRNA-dihydrouridine s 74.8 37 0.0008 32.8 10.8 97 107-238 81-193 (312)
276 PRK11815 tRNA-dihydrouridine s 74.7 14 0.0003 35.9 7.9 81 103-217 79-173 (333)
277 cd02809 alpha_hydroxyacid_oxid 74.6 15 0.00032 34.9 8.0 76 99-218 127-203 (299)
278 TIGR02026 BchE magnesium-proto 74.6 72 0.0016 32.5 13.4 91 54-150 240-343 (497)
279 TIGR02631 xylA_Arthro xylose i 74.4 21 0.00045 35.6 9.2 46 102-147 33-85 (382)
280 PF01081 Aldolase: KDPG and KH 74.4 6.9 0.00015 35.7 5.4 69 101-216 20-88 (196)
281 cd08205 RuBisCO_IV_RLP Ribulos 74.4 8.2 0.00018 38.2 6.4 84 100-216 145-231 (367)
282 COG0635 HemN Coproporphyrinoge 74.3 43 0.00093 33.7 11.5 126 53-216 87-225 (416)
283 TIGR03239 GarL 2-dehydro-3-deo 74.2 12 0.00027 35.0 7.2 43 105-147 24-66 (249)
284 PF01026 TatD_DNase: TatD rela 73.7 51 0.0011 30.3 11.1 169 22-250 24-207 (255)
285 TIGR01304 IMP_DH_rel_2 IMP deh 73.7 29 0.00062 34.7 10.0 70 68-145 117-190 (369)
286 PRK06015 keto-hydroxyglutarate 73.3 11 0.00024 34.5 6.6 36 102-142 17-52 (201)
287 COG0119 LeuA Isopropylmalate/h 73.3 58 0.0013 33.0 12.1 124 70-232 117-240 (409)
288 PRK06552 keto-hydroxyglutarate 73.2 26 0.00057 32.1 9.0 54 75-141 6-60 (213)
289 cd07938 DRE_TIM_HMGL 3-hydroxy 73.1 28 0.00061 32.9 9.4 148 41-238 23-187 (274)
290 cd04733 OYE_like_2_FMN Old yel 73.0 55 0.0012 31.5 11.6 24 191-217 235-258 (338)
291 cd04734 OYE_like_3_FMN Old yel 72.9 19 0.0004 35.1 8.3 56 70-126 192-254 (343)
292 TIGR00737 nifR3_yhdG putative 72.8 35 0.00076 32.6 10.1 103 101-239 75-192 (319)
293 cd02875 GH18_chitobiase Chitob 72.7 8.6 0.00019 37.6 6.0 67 73-141 67-140 (358)
294 cd04732 HisA HisA. Phosphorib 72.7 14 0.00031 32.9 7.1 102 25-141 73-187 (234)
295 PRK13125 trpA tryptophan synth 72.6 80 0.0017 29.1 19.5 109 39-152 16-138 (244)
296 PRK12857 fructose-1,6-bisphosp 72.5 94 0.002 29.9 13.9 137 105-267 88-232 (284)
297 cd04723 HisA_HisF Phosphoribos 72.5 27 0.00059 32.0 9.0 101 102-251 36-136 (233)
298 PRK05660 HemN family oxidoredu 72.5 20 0.00044 35.2 8.6 119 27-145 61-189 (378)
299 PRK14847 hypothetical protein; 72.3 61 0.0013 32.1 11.8 142 55-236 125-293 (333)
300 PRK13758 anaerobic sulfatase-m 72.0 93 0.002 29.9 12.9 96 39-145 40-159 (370)
301 TIGR01769 GGGP geranylgeranylg 71.8 12 0.00027 34.3 6.5 38 101-141 134-173 (205)
302 TIGR00539 hemN_rel putative ox 71.8 17 0.00037 35.2 7.8 118 27-145 54-182 (360)
303 cd02940 DHPD_FMN Dihydropyrimi 71.5 28 0.00061 33.0 9.0 74 102-214 114-199 (299)
304 cd07941 DRE_TIM_LeuA3 Desulfob 71.4 34 0.00073 32.1 9.5 148 42-236 24-187 (273)
305 PRK13347 coproporphyrinogen II 71.2 24 0.00052 35.5 8.9 121 27-147 106-236 (453)
306 cd06545 GH18_3CO4_chitinase Th 71.1 12 0.00027 34.3 6.4 71 70-141 46-126 (253)
307 PRK08318 dihydropyrimidine deh 70.6 26 0.00057 34.7 9.0 49 102-153 114-174 (420)
308 cd08574 GDPD_GDE_2_3_6 Glycero 70.6 63 0.0014 29.8 11.0 99 42-148 115-228 (252)
309 cd00740 MeTr MeTr subgroup of 70.6 43 0.00093 31.4 9.9 96 42-140 31-147 (252)
310 PRK10558 alpha-dehydro-beta-de 70.5 14 0.00031 34.7 6.8 65 71-147 9-73 (256)
311 CHL00073 chlN photochlorophyll 70.3 33 0.00071 35.3 9.7 179 39-278 206-407 (457)
312 PF03644 Glyco_hydro_85: Glyco 70.3 9.6 0.00021 36.9 5.7 92 51-145 26-133 (311)
313 cd04738 DHOD_2_like Dihydrooro 70.2 29 0.00062 33.5 8.9 81 102-217 146-238 (327)
314 COG0269 SgbH 3-hexulose-6-phos 70.2 65 0.0014 30.2 10.8 122 42-225 72-201 (217)
315 PRK08883 ribulose-phosphate 3- 70.2 30 0.00065 31.8 8.6 34 199-235 179-212 (220)
316 PRK09061 D-glutamate deacylase 70.2 27 0.00059 35.8 9.2 97 54-153 183-285 (509)
317 PRK05927 hypothetical protein; 70.0 56 0.0012 32.1 11.0 114 40-156 78-209 (350)
318 COG0134 TrpC Indole-3-glycerol 69.8 41 0.00088 32.2 9.6 111 107-266 122-234 (254)
319 cd00598 GH18_chitinase-like Th 69.7 29 0.00063 30.0 8.1 119 2-141 2-135 (210)
320 TIGR00742 yjbN tRNA dihydrouri 69.5 38 0.00082 32.9 9.6 81 57-141 96-191 (318)
321 PRK06256 biotin synthase; Vali 69.5 51 0.0011 31.4 10.4 69 73-145 152-231 (336)
322 TIGR01235 pyruv_carbox pyruvat 69.4 17 0.00036 41.4 8.0 40 103-142 691-730 (1143)
323 PRK09427 bifunctional indole-3 69.3 22 0.00047 36.4 8.2 93 107-248 125-218 (454)
324 PF01136 Peptidase_U32: Peptid 69.1 30 0.00065 31.0 8.3 33 102-144 3-35 (233)
325 PF10566 Glyco_hydro_97: Glyco 68.9 9.4 0.0002 36.6 5.2 110 101-245 32-153 (273)
326 PTZ00331 alpha/beta hydrolase; 68.9 11 0.00024 34.1 5.4 64 77-147 139-204 (212)
327 PRK05718 keto-hydroxyglutarate 68.8 21 0.00046 32.8 7.3 54 71-141 96-151 (212)
328 TIGR03822 AblA_like_2 lysine-2 68.8 1.1E+02 0.0025 29.4 12.8 169 41-249 122-308 (321)
329 PRK02227 hypothetical protein; 68.5 25 0.00053 33.4 7.8 153 41-239 68-234 (238)
330 PRK08610 fructose-bisphosphate 68.5 80 0.0017 30.5 11.4 194 42-267 5-233 (286)
331 TIGR00977 LeuA_rel 2-isopropyl 68.3 21 0.00046 37.1 8.0 151 42-238 27-192 (526)
332 cd00381 IMPDH IMPDH: The catal 68.3 34 0.00073 33.2 9.0 65 68-143 68-133 (325)
333 PRK07360 FO synthase subunit 2 68.2 65 0.0014 31.7 11.0 109 39-148 92-219 (371)
334 PRK09249 coproporphyrinogen II 68.2 22 0.00048 35.7 8.0 119 27-145 105-233 (453)
335 cd02812 PcrB_like PcrB_like pr 68.2 18 0.0004 33.5 6.8 74 100-221 134-209 (219)
336 COG0413 PanB Ketopantoate hydr 68.2 30 0.00064 33.4 8.3 87 103-216 96-182 (268)
337 PRK11815 tRNA-dihydrouridine s 68.0 22 0.00048 34.5 7.7 65 57-124 106-174 (333)
338 TIGR00735 hisF imidazoleglycer 67.8 1E+02 0.0022 28.4 13.2 109 25-142 74-197 (254)
339 PLN02617 imidazole glycerol ph 67.7 57 0.0012 34.2 11.0 112 106-248 272-393 (538)
340 cd01011 nicotinamidase Nicotin 67.7 15 0.00034 32.5 6.1 65 75-146 129-195 (196)
341 PRK10128 2-keto-3-deoxy-L-rham 67.7 20 0.00042 34.2 7.1 64 71-146 8-71 (267)
342 PRK13745 anaerobic sulfatase-m 67.6 70 0.0015 31.7 11.2 96 39-145 49-168 (412)
343 PRK07565 dihydroorotate dehydr 67.6 77 0.0017 30.6 11.2 41 102-142 115-163 (334)
344 PRK01122 potassium-transportin 67.6 16 0.00036 39.2 7.2 62 68-145 446-509 (679)
345 PRK14010 potassium-transportin 67.4 17 0.00037 39.0 7.3 63 67-145 441-505 (673)
346 PRK13209 L-xylulose 5-phosphat 67.3 26 0.00056 32.1 7.7 107 42-151 25-159 (283)
347 cd04725 OMP_decarboxylase_like 67.2 22 0.00047 32.3 7.0 93 39-143 9-102 (216)
348 TIGR01182 eda Entner-Doudoroff 67.1 12 0.00026 34.3 5.4 94 69-222 87-182 (204)
349 cd00945 Aldolase_Class_I Class 66.8 26 0.00056 29.6 7.1 103 100-248 12-122 (201)
350 PRK08208 coproporphyrinogen II 66.8 35 0.00076 34.1 9.0 116 27-145 94-223 (430)
351 PLN02826 dihydroorotate dehydr 66.7 48 0.001 33.5 9.9 85 40-129 203-304 (409)
352 PRK07379 coproporphyrinogen II 66.0 29 0.00063 34.4 8.2 119 27-145 69-197 (400)
353 PRK08323 phenylhydantoinase; V 66.0 82 0.0018 31.1 11.3 97 52-153 140-262 (459)
354 COG1060 ThiH Thiamine biosynth 65.9 11 0.00023 37.7 5.1 157 17-212 46-216 (370)
355 PRK13125 trpA tryptophan synth 65.9 30 0.00065 31.9 7.8 23 198-221 197-219 (244)
356 PRK00748 1-(5-phosphoribosyl)- 65.7 65 0.0014 28.8 9.8 137 22-214 71-219 (233)
357 cd06542 GH18_EndoS-like Endo-b 65.6 31 0.00068 31.4 7.8 94 47-141 21-139 (255)
358 PRK12737 gatY tagatose-bisphos 65.5 1.3E+02 0.0029 28.9 13.8 138 104-267 87-232 (284)
359 cd00452 KDPG_aldolase KDPG and 65.4 34 0.00073 30.2 7.7 22 198-220 154-175 (190)
360 TIGR00542 hxl6Piso_put hexulos 64.9 75 0.0016 29.2 10.2 109 42-150 17-153 (279)
361 smart00052 EAL Putative diguan 64.8 21 0.00046 31.0 6.3 77 22-118 143-228 (241)
362 PRK13306 ulaD 3-keto-L-gulonat 64.7 18 0.00038 33.1 6.0 93 39-144 14-107 (216)
363 COG4130 Predicted sugar epimer 64.7 8.1 0.00018 36.7 3.8 47 102-148 18-67 (272)
364 cd06556 ICL_KPHMT Members of t 64.7 38 0.00082 31.7 8.3 138 110-281 28-215 (240)
365 cd01948 EAL EAL domain. This d 64.6 16 0.00034 31.9 5.4 80 22-118 142-227 (240)
366 PF00128 Alpha-amylase: Alpha 64.5 9.7 0.00021 34.1 4.2 50 103-152 6-74 (316)
367 PF03740 PdxJ: Pyridoxal phosp 64.5 9.4 0.0002 36.2 4.2 50 66-125 107-156 (239)
368 smart00518 AP2Ec AP endonuclea 64.3 62 0.0013 29.4 9.5 98 43-140 12-125 (273)
369 TIGR03572 WbuZ glycosyl amidat 64.3 89 0.0019 28.1 10.4 105 25-142 74-195 (232)
370 TIGR02129 hisA_euk phosphoribo 64.2 12 0.00027 35.5 5.0 48 199-248 88-135 (253)
371 PRK00278 trpC indole-3-glycero 64.1 68 0.0015 30.1 9.9 25 198-223 223-247 (260)
372 PRK08255 salicylyl-CoA 5-hydro 64.1 12 0.00027 40.1 5.5 54 70-125 602-662 (765)
373 cd02932 OYE_YqiM_FMN Old yello 63.7 1.3E+02 0.0027 29.0 11.9 22 191-215 240-261 (336)
374 PHA02754 hypothetical protein; 63.7 5 0.00011 30.6 1.8 20 40-59 20-39 (67)
375 cd07945 DRE_TIM_CMS Leptospira 63.6 57 0.0012 31.0 9.4 140 46-238 28-185 (280)
376 TIGR01515 branching_enzym alph 63.5 14 0.0003 38.8 5.7 49 104-152 160-228 (613)
377 PRK12595 bifunctional 3-deoxy- 63.5 1.2E+02 0.0025 30.2 11.8 138 49-238 197-350 (360)
378 TIGR01037 pyrD_sub1_fam dihydr 63.4 58 0.0012 30.6 9.3 71 106-215 108-189 (300)
379 PRK05904 coproporphyrinogen II 63.3 39 0.00084 33.1 8.4 117 27-146 59-186 (353)
380 TIGR03700 mena_SCO4494 putativ 63.2 88 0.0019 30.4 10.8 90 60-149 102-207 (351)
381 PRK08091 ribulose-phosphate 3- 63.1 1E+02 0.0022 28.9 10.7 134 102-253 79-219 (228)
382 COG1038 PycA Pyruvate carboxyl 63.1 9.6 0.00021 42.2 4.4 69 71-148 68-138 (1149)
383 PRK13587 1-(5-phosphoribosyl)- 63.0 13 0.00029 34.2 4.9 88 113-249 44-132 (234)
384 PF01207 Dus: Dihydrouridine s 63.0 34 0.00073 32.8 7.8 105 99-239 64-183 (309)
385 PRK05437 isopentenyl pyrophosp 62.7 1.3E+02 0.0029 29.5 12.0 127 32-214 133-289 (352)
386 cd04733 OYE_like_2_FMN Old yel 62.6 24 0.00052 34.0 6.8 23 103-125 238-260 (338)
387 cd04735 OYE_like_4_FMN Old yel 62.5 11 0.00023 36.8 4.4 23 103-125 237-259 (353)
388 cd08210 RLP_RrRLP Ribulose bis 62.5 21 0.00045 35.5 6.4 115 101-248 141-286 (364)
389 COG5016 Pyruvate/oxaloacetate 62.4 17 0.00036 37.3 5.7 81 54-141 112-196 (472)
390 cd02933 OYE_like_FMN Old yello 62.2 17 0.00038 35.3 5.7 37 105-141 245-282 (338)
391 PF07071 DUF1341: Protein of u 62.0 31 0.00068 32.3 7.0 50 103-152 137-186 (218)
392 TIGR00238 KamA family protein. 61.9 1.2E+02 0.0026 29.5 11.4 104 41-152 145-259 (331)
393 TIGR02617 tnaA_trp_ase tryptop 61.9 28 0.00061 36.0 7.4 101 39-141 168-292 (467)
394 TIGR00970 leuA_yeast 2-isoprop 61.9 1.2E+02 0.0025 32.0 12.0 146 56-239 120-293 (564)
395 TIGR00538 hemN oxygen-independ 61.4 35 0.00076 34.3 7.9 108 39-146 117-234 (455)
396 TIGR01163 rpe ribulose-phospha 61.4 39 0.00085 29.4 7.4 41 101-141 11-53 (210)
397 PRK12313 glycogen branching en 61.3 17 0.00038 38.1 6.0 50 103-152 173-242 (633)
398 PRK08645 bifunctional homocyst 61.1 1E+02 0.0022 32.5 11.6 80 40-123 337-418 (612)
399 TIGR03470 HpnH hopanoid biosyn 61.1 17 0.00037 34.9 5.4 50 71-123 150-200 (318)
400 PRK15447 putative protease; Pr 61.1 37 0.00079 32.5 7.6 87 42-146 16-110 (301)
401 PRK07114 keto-hydroxyglutarate 61.0 11 0.00023 35.1 3.8 58 66-141 95-154 (222)
402 TIGR01949 AroFGH_arch predicte 60.9 86 0.0019 29.0 9.9 154 20-223 67-234 (258)
403 COG0535 Predicted Fe-S oxidore 60.5 1.4E+02 0.0031 27.6 12.3 93 43-145 56-160 (347)
404 cd01315 L-HYD_ALN L-Hydantoina 60.5 1.3E+02 0.0029 29.5 11.7 125 23-152 81-263 (447)
405 PF01081 Aldolase: KDPG and KH 60.4 6.6 0.00014 35.8 2.3 95 68-222 86-182 (196)
406 cd01314 D-HYD D-hydantoinases 60.3 94 0.002 30.6 10.6 94 54-152 144-263 (447)
407 TIGR01919 hisA-trpF 1-(5-phosp 60.3 87 0.0019 29.2 9.8 86 39-134 85-186 (243)
408 TIGR01859 fruc_bis_ald_ fructo 60.3 98 0.0021 29.6 10.4 133 105-267 88-230 (282)
409 cd04726 KGPDC_HPS 3-Keto-L-gul 60.1 79 0.0017 27.4 9.0 24 199-223 170-193 (202)
410 TIGR01497 kdpB K+-transporting 60.1 28 0.00061 37.4 7.3 63 67-145 446-510 (675)
411 TIGR00433 bioB biotin syntheta 60.0 97 0.0021 28.7 10.1 71 70-149 98-177 (296)
412 TIGR02311 HpaI 2,4-dihydroxyhe 59.9 36 0.00079 31.7 7.2 42 104-145 23-64 (249)
413 cd02072 Glm_B12_BD B12 binding 59.9 23 0.00049 30.4 5.4 94 39-145 15-110 (128)
414 COG3010 NanE Putative N-acetyl 59.6 51 0.0011 31.1 7.9 117 43-216 88-210 (229)
415 PRK08227 autoinducer 2 aldolas 59.4 61 0.0013 31.0 8.7 146 56-223 78-233 (264)
416 PRK13210 putative L-xylulose 5 59.4 43 0.00092 30.5 7.5 84 68-151 50-154 (284)
417 PRK13307 bifunctional formalde 58.9 28 0.00061 35.1 6.7 95 39-146 183-279 (391)
418 PRK13396 3-deoxy-7-phosphohept 58.9 38 0.00082 33.8 7.5 53 198-250 289-347 (352)
419 PRK07709 fructose-bisphosphate 58.8 1.6E+02 0.0035 28.4 11.6 194 42-267 5-233 (285)
420 TIGR00010 hydrolase, TatD fami 58.8 1E+02 0.0022 27.3 9.6 47 198-250 157-203 (252)
421 PRK09234 fbiC FO synthase; Rev 58.7 52 0.0011 36.4 9.1 105 43-148 559-684 (843)
422 TIGR00007 phosphoribosylformim 58.6 1.1E+02 0.0023 27.4 9.8 102 25-141 72-186 (230)
423 PF13380 CoA_binding_2: CoA bi 58.6 13 0.00029 30.5 3.7 41 101-147 66-106 (116)
424 PRK02261 methylaspartate mutas 58.6 36 0.00077 29.0 6.4 95 39-146 19-115 (137)
425 PLN02389 biotin synthase 58.6 59 0.0013 32.4 8.9 70 70-148 153-231 (379)
426 TIGR02127 pyrF_sub2 orotidine 58.3 52 0.0011 31.2 8.0 94 42-143 42-140 (261)
427 PF01261 AP_endonuc_2: Xylose 58.2 4.9 0.00011 34.1 1.1 98 54-151 9-133 (213)
428 PF05913 DUF871: Bacterial pro 58.2 14 0.00031 36.6 4.4 152 82-280 2-197 (357)
429 PRK08255 salicylyl-CoA 5-hydro 58.1 56 0.0012 35.2 9.2 23 191-216 637-659 (765)
430 TIGR01304 IMP_DH_rel_2 IMP deh 58.1 1.6E+02 0.0035 29.4 11.8 106 104-264 102-212 (369)
431 PRK09196 fructose-1,6-bisphosp 58.1 19 0.0004 35.8 5.2 108 57-212 95-274 (347)
432 cd04747 OYE_like_5_FMN Old yel 58.1 80 0.0017 31.3 9.6 21 191-214 234-254 (361)
433 PF01791 DeoC: DeoC/LacD famil 58.0 15 0.00032 33.5 4.2 139 41-212 80-225 (236)
434 PLN02447 1,4-alpha-glucan-bran 57.6 20 0.00042 39.2 5.6 49 104-152 254-322 (758)
435 TIGR03234 OH-pyruv-isom hydrox 57.5 48 0.001 29.9 7.5 78 71-150 40-143 (254)
436 PRK09248 putative hydrolase; V 57.2 24 0.00051 32.3 5.4 16 103-118 203-218 (246)
437 PF03932 CutC: CutC family; I 57.1 1.3E+02 0.0028 27.6 10.2 123 108-266 14-145 (201)
438 PRK00230 orotidine 5'-phosphat 56.9 17 0.00038 33.3 4.5 90 39-140 13-103 (230)
439 TIGR01036 pyrD_sub2 dihydrooro 56.9 74 0.0016 31.0 9.1 40 102-141 152-200 (335)
440 TIGR01496 DHPS dihydropteroate 56.8 1.3E+02 0.0028 28.2 10.4 74 72-145 63-163 (257)
441 PRK09997 hydroxypyruvate isome 56.7 78 0.0017 28.8 8.7 76 71-149 41-143 (258)
442 PF00977 His_biosynth: Histidi 56.7 32 0.0007 31.4 6.2 94 109-250 37-131 (229)
443 PF00563 EAL: EAL domain; Int 56.7 16 0.00034 31.7 4.0 80 22-119 144-229 (236)
444 TIGR02104 pulA_typeI pullulana 56.5 21 0.00045 37.5 5.5 51 102-152 165-251 (605)
445 cd06522 GH25_AtlA-like AtlA is 56.4 64 0.0014 28.6 7.9 83 56-144 30-123 (192)
446 PF02548 Pantoate_transf: Keto 56.3 84 0.0018 30.2 9.1 74 108-216 30-116 (261)
447 PLN02460 indole-3-glycerol-pho 56.2 20 0.00044 35.5 5.1 115 103-266 191-315 (338)
448 TIGR01501 MthylAspMutase methy 56.2 27 0.00059 30.1 5.3 94 39-145 17-112 (134)
449 PLN02540 methylenetetrahydrofo 56.1 1.2E+02 0.0026 32.2 10.9 67 54-124 29-96 (565)
450 COG1891 Uncharacterized protei 56.0 13 0.00027 34.5 3.3 56 50-116 119-182 (235)
451 PRK12738 kbaY tagatose-bisphos 56.0 1.4E+02 0.003 28.9 10.6 167 42-240 5-203 (286)
452 PRK09441 cytoplasmic alpha-amy 55.7 23 0.00049 35.9 5.5 50 103-152 24-103 (479)
453 TIGR01302 IMP_dehydrog inosine 55.6 26 0.00057 35.4 5.9 16 201-216 342-357 (450)
454 PRK07428 nicotinate-nucleotide 55.5 22 0.00047 34.3 5.1 42 198-248 206-249 (288)
455 cd00530 PTE Phosphotriesterase 55.5 1.7E+02 0.0037 26.9 12.5 54 198-252 191-248 (293)
456 PRK10785 maltodextrin glucosid 55.2 23 0.00049 37.2 5.6 50 103-152 181-248 (598)
457 PLN02858 fructose-bisphosphate 55.0 1.5E+02 0.0032 34.7 12.3 183 24-238 1070-1297(1378)
458 cd03321 mandelate_racemase Man 54.9 14 0.0003 35.7 3.7 62 24-95 236-300 (355)
459 cd04727 pdxS PdxS is a subunit 54.9 2E+02 0.0044 28.0 11.5 110 40-214 77-224 (283)
460 PRK07998 gatY putative fructos 54.6 69 0.0015 30.9 8.3 52 71-125 116-177 (283)
461 cd04885 ACT_ThrD-I Tandem C-te 54.2 26 0.00056 25.7 4.3 46 100-146 9-66 (68)
462 PF03205 MobB: Molybdopterin g 54.2 30 0.00066 29.3 5.3 45 202-247 52-99 (140)
463 PRK13586 1-(5-phosphoribosyl)- 54.0 1.6E+02 0.0035 27.2 10.4 90 39-141 84-187 (232)
464 PRK08207 coproporphyrinogen II 53.9 67 0.0015 33.1 8.6 119 27-145 221-351 (488)
465 COG0800 Eda 2-keto-3-deoxy-6-p 53.6 44 0.00095 31.2 6.5 67 100-213 24-90 (211)
466 PRK06294 coproporphyrinogen II 53.6 75 0.0016 31.1 8.6 114 28-145 62-185 (370)
467 PRK09140 2-dehydro-3-deoxy-6-p 53.6 31 0.00068 31.3 5.6 35 102-141 23-57 (206)
468 cd00945 Aldolase_Class_I Class 53.5 1.4E+02 0.0029 25.2 10.8 70 70-142 35-109 (201)
469 PF02811 PHP: PHP domain; Int 53.4 19 0.00041 29.9 3.8 49 99-152 14-62 (175)
470 PRK07084 fructose-bisphosphate 53.4 1.8E+02 0.0038 28.8 11.0 201 41-273 10-254 (321)
471 PLN02495 oxidoreductase, actin 53.3 82 0.0018 31.7 8.9 74 102-214 128-213 (385)
472 COG1105 FruK Fructose-1-phosph 53.2 46 0.00099 32.7 6.9 145 40-215 64-221 (310)
473 PF02548 Pantoate_transf: Keto 53.1 47 0.001 31.9 6.8 138 42-216 27-183 (261)
474 PRK05628 coproporphyrinogen II 52.9 77 0.0017 30.8 8.5 121 27-147 62-192 (375)
475 PRK11572 copper homeostasis pr 52.9 2.1E+02 0.0046 27.2 11.9 51 189-245 70-120 (248)
476 PRK07329 hypothetical protein; 52.9 34 0.00073 31.5 5.7 77 69-148 164-244 (246)
477 cd06525 GH25_Lyc-like Lyc mura 52.7 21 0.00045 31.3 4.2 85 55-145 25-119 (184)
478 PRK09240 thiH thiamine biosynt 52.7 1.5E+02 0.0033 29.1 10.6 96 39-145 105-217 (371)
479 TIGR00559 pdxJ pyridoxine 5'-p 52.7 44 0.00095 31.7 6.5 51 67-127 107-157 (237)
480 PRK06559 nicotinate-nucleotide 52.6 28 0.00061 33.8 5.3 41 198-248 207-247 (290)
481 PRK05301 pyrroloquinoline quin 52.6 32 0.00069 33.4 5.8 70 66-145 45-116 (378)
482 cd01012 YcaC_related YcaC rela 52.6 41 0.00089 28.5 5.8 91 42-146 52-145 (157)
483 PRK06852 aldolase; Validated 52.6 1.7E+02 0.0036 28.7 10.6 152 56-224 96-273 (304)
484 cd02931 ER_like_FMN Enoate red 52.5 94 0.002 30.8 9.1 25 190-217 250-274 (382)
485 PRK11059 regulatory protein Cs 52.5 34 0.00073 35.6 6.3 79 22-118 543-628 (640)
486 KOG2535 RNA polymerase II elon 52.4 2.8E+02 0.0061 28.5 13.5 161 45-240 160-365 (554)
487 PRK06846 putative deaminase; V 52.3 33 0.00071 33.7 5.9 75 69-148 205-285 (410)
488 PRK12568 glycogen branching en 52.2 28 0.0006 37.9 5.7 50 103-152 272-341 (730)
489 TIGR01768 GGGP-family geranylg 52.2 75 0.0016 29.7 7.9 17 198-214 191-207 (223)
490 PRK06096 molybdenum transport 52.2 29 0.00062 33.5 5.3 42 198-248 199-242 (284)
491 TIGR01235 pyruv_carbox pyruvat 52.2 1.2E+02 0.0027 34.7 10.9 102 102-238 626-727 (1143)
492 PRK07084 fructose-bisphosphate 52.0 1.1E+02 0.0023 30.3 9.2 146 71-263 11-179 (321)
493 PLN02826 dihydroorotate dehydr 52.0 1.1E+02 0.0023 31.0 9.5 80 102-216 202-297 (409)
494 TIGR00167 cbbA ketose-bisphosp 51.7 2.3E+02 0.005 27.3 11.6 196 42-267 5-236 (288)
495 cd00854 NagA N-acetylglucosami 51.7 22 0.00047 34.6 4.5 73 39-129 147-223 (374)
496 cd02931 ER_like_FMN Enoate red 51.6 49 0.0011 32.7 7.0 21 105-125 256-276 (382)
497 PRK08444 hypothetical protein; 51.6 2.1E+02 0.0045 28.3 11.3 100 54-155 97-212 (353)
498 PF00696 AA_kinase: Amino acid 51.5 1E+02 0.0022 27.4 8.5 87 129-246 85-178 (242)
499 TIGR02403 trehalose_treC alpha 51.4 28 0.00062 36.0 5.5 50 103-152 29-97 (543)
500 COG0296 GlgB 1,4-alpha-glucan 51.3 29 0.00062 37.2 5.6 94 48-150 115-234 (628)
No 1
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=100.00 E-value=8.3e-93 Score=653.59 Aligned_cols=237 Identities=39% Similarity=0.663 Sum_probs=196.4
Q ss_pred CCCCCCCCCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCC-cH
Q 022296 13 EYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DW 91 (299)
Q Consensus 13 ~~~~R~~KPR~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tl 91 (299)
++|+|++|||++|+|||+|||+ |+++++|+|++||+|||++|||||||+|||++.|++||++||+|||+|||| |+
T Consensus 1 ~~~~R~~KPR~~GlT~v~Dkgl----g~~~~~dlLe~ag~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl 76 (244)
T PF02679_consen 1 NLPERPEKPRSRGLTMVIDKGL----GLRYLEDLLESAGDYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTL 76 (244)
T ss_dssp -TTGGG-SS-SSS-EEEEESS------HHHHHHHHHHHGGG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHH
T ss_pred CCCCCCCCCCCCCcEEEecCCC----CHHHHHHHHHHhhhhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHH
Confidence 4789999999999999999998 888999999999999999999999999999999999999999999999997 69
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 022296 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (299)
Q Consensus 92 fE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~ 171 (299)
||+|++|+ ++++|+++||++||++|||||||++||+++|+++|++++++||+|+||||+|++.++
T Consensus 77 ~E~a~~q~--~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~EvG~K~~~~~------------- 141 (244)
T PF02679_consen 77 FEVAYQQG--KFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLSEVGKKDPESD------------- 141 (244)
T ss_dssp HHHHHHTT---HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEEEES-SSHHHH-------------
T ss_pred HHHHHhcC--hHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEeecccCCCchhc-------------
Confidence 99999999 999999999999999999999999999999999999999999999999999855321
Q ss_pred cCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-----ccccCCCcccHHHHHHHHhccCCCceEEe
Q 022296 172 ARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRLGLEKTMFE 246 (299)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-----gi~d~~G~~r~d~i~~ii~~l~~eklifE 246 (299)
...+++++ |+++++||+|||++|||||| |||+++|+||+|++++|++++|++|||||
T Consensus 142 ---------------~~~~~~~~---i~~~~~dLeAGA~~ViiEarEsG~~Gi~~~~g~~r~d~v~~i~~~~~~~~lifE 203 (244)
T PF02679_consen 142 ---------------FSLDPEEL---IEQAKRDLEAGADKVIIEARESGKGGIYDNDGEVRTDLVEKIIERLGLEKLIFE 203 (244)
T ss_dssp ---------------TT--CCHH---HHHHHHHHHHTECEEEE--TTT--STTB-TTS-B-HHHHHHHHTTS-GGGEEEE
T ss_pred ---------------ccCCHHHH---HHHHHHHHHCCCCEEEEeeeccCCCCccCCCCCccHHHHHHHHHhCCHhHEEEe
Confidence 01337788 99999999999999999999 99999999999999999999999999999
Q ss_pred cCCchhHHHHHHHhCCCcccc-cCCCCchhhhhhhcccCCC
Q 022296 247 ATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLECLRGRNLGK 286 (299)
Q Consensus 247 AP~k~qQ~~fI~~fG~~VNLg-I~~~eVi~LE~LR~~~~G~ 286 (299)
||+|+||+|||++|||||||| |+|+||++|||||+|+||.
T Consensus 204 Ap~k~qq~~~I~~~G~~VNLgNI~~~eVl~LE~LR~GLrgD 244 (244)
T PF02679_consen 204 APQKEQQEWFIKRFGPNVNLGNIAPSEVLALETLRRGLRGD 244 (244)
T ss_dssp --SHHHHHHHHHHH-TT--EEEEEGGGHHHHHHHHCT-SGG
T ss_pred CCCHhHHHHHHHHhCCCcCcccCCHHHHHHHHHHhccccCC
Confidence 999999999999999999998 9999999999999999983
No 2
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=100.00 E-value=7.8e-87 Score=611.41 Aligned_cols=226 Identities=24% Similarity=0.426 Sum_probs=214.4
Q ss_pred ceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHH
Q 022296 26 VTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFK 104 (299)
Q Consensus 26 lT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~ 104 (299)
+|||+|||| |+++++|+|++||+|||++||||||++|||++.|+|||++||+|||+|||| ||||+|+.|+ +++
T Consensus 1 lT~v~dkgl----~~~~~~d~Le~~g~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~GGtl~E~~~~q~--~~~ 74 (237)
T TIGR03849 1 ITMVLDKGL----PPKFVEDYLKVCGDYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPGGTLFEIAHSKG--KFD 74 (237)
T ss_pred CceEecCCC----CHHHHHHHHHHhhhheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCCccHHHHHHHhh--hHH
Confidence 699999999 788999999999999999999999999999999999999999999999997 6999999998 999
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhccc
Q 022296 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLA 184 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~ 184 (299)
+|+++||++||++|||||||++||+++|+++|++++++||+|+||||+|++.. + +
T Consensus 75 ~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~------~-------------~------ 129 (237)
T TIGR03849 75 EYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEVGKKSPEK------D-------------S------ 129 (237)
T ss_pred HHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEeccccccCCcc------c-------------c------
Confidence 99999999999999999999999999999999999999999999999997522 1 0
Q ss_pred CCCccchhhhhhhHHHHHHHHHccCcEEEEecc------ccccCCCcccHHHHHHHHhccCCCceEEecCCchhHHHHHH
Q 022296 185 SNPEIEVGVGINKSRRAERCLEAGADMIMIDSD------DVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIR 258 (299)
Q Consensus 185 ~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar------gi~d~~G~~r~d~i~~ii~~l~~eklifEAP~k~qQ~~fI~ 258 (299)
.++++++ |+++++||+|||++|||||| |||+++|+||+|++++|++++|++|||||||+|+||+|||+
T Consensus 130 ---~~~~~~~---i~~~~~~LeAGA~~ViiEarEsg~~~Gi~~~~g~~r~d~v~~i~~~l~~eklifEAp~k~~q~~~I~ 203 (237)
T TIGR03849 130 ---ELTPDDR---IKLINKDLEAGADYVIIEGRESGKNIGLFDEKGNVKEDELDVLAENVDINKVIFEAPQKNQQVEFIL 203 (237)
T ss_pred ---cCCHHHH---HHHHHHHHHCCCcEEEEeehhcCCCcceeCCCCCCchHHHHHHHhhCChhcEEEECCCHHHHHHHHH
Confidence 1347788 99999999999999999995 89999999999999999999999999999999999999999
Q ss_pred HhCCCcccc-cCCCCchhhhhhhcccCCCcc
Q 022296 259 RYGPKVNLF-VDHSQVMDLECLRGRNLGKSH 288 (299)
Q Consensus 259 ~fG~~VNLg-I~~~eVi~LE~LR~~~~G~~~ 288 (299)
+|||||||| |+|+||++|||||+|+||.+.
T Consensus 204 ~~G~~VNL~NI~~~evi~LE~LR~GLrgDT~ 234 (237)
T TIGR03849 204 KFGPDVNLGNIPPEEVISLETLRRGLRGDTF 234 (237)
T ss_pred HhCCCcccccCCHHHHHHHHHHhcccccccc
Confidence 999999997 999999999999999998654
No 3
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.1e-81 Score=570.34 Aligned_cols=244 Identities=25% Similarity=0.468 Sum_probs=228.4
Q ss_pred cccCCC-CCCCCCCCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCcee
Q 022296 8 WKSFDE-YEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV 86 (299)
Q Consensus 8 ~~~f~~-~~~R~~KPR~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v 86 (299)
|+.|.- .|.|++|||.+|+|+|+|||| ||+.++|+|++||+|||++||||||++|.+++.+++||++||+|||+|
T Consensus 1 m~aF~f~~~~r~~kPr~~G~T~vldkg~----~p~f~~D~~~vagdyVDfvKfgwGT~~Li~kd~V~ekid~y~e~~i~v 76 (258)
T COG1809 1 MNAFEFLPPARPEKPRTFGMTVVLDKGL----GPRFVEDVLKVAGDYVDFVKFGWGTSSLIDKDQVKEKIDMYKENDIYV 76 (258)
T ss_pred CCcccccCCCCCCCCccCCeEEEEeCCC----ChHHHHHHHHhhhhheeeeeecccccccccHHHHHHHHHHHHHcCcee
Confidence 456764 467999999999999999999 888999999999999999999999999999999999999999999999
Q ss_pred cCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccc
Q 022296 87 STG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDR 165 (299)
Q Consensus 87 ~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~ 165 (299)
||| |+||+++.|+ +|++|+++|+++||++|||||||++|+.++||++|+++.+.||+|+||+|+|.+.+ |+
T Consensus 77 ~pGGtlfe~a~~~~--kvdeyl~e~~~lGfe~iEIS~G~i~m~~eek~~lIe~a~d~Gf~vlsEvGkk~~e~------~~ 148 (258)
T COG1809 77 FPGGTLFEIAYSQD--KVDEYLNEAKELGFEAIEISNGTIPMSTEEKCRLIERAVDEGFMVLSEVGKKDPES------DS 148 (258)
T ss_pred cCCceEEEeehhcc--cHHHHHHHHHHcCccEEEecCCeeecchHHHHHHHHHHHhcccEEehhhcccCcch------hh
Confidence 996 7999999999 99999999999999999999999999999999999999999999999999997632 21
Q ss_pred cccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc------ccccCCCcccHHHHHHHHhccC
Q 022296 166 AFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD------DVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar------gi~d~~G~~r~d~i~~ii~~l~ 239 (299)
.++++++ ++.+..|++|||++||+||| |||++.|+||++.++.|++++|
T Consensus 149 ----------------------~l~~~d~---~k~i~~dvdaGa~~vi~eAresg~~~Gi~~~~g~~r~~~~~~ii~~l~ 203 (258)
T COG1809 149 ----------------------ALSPDDR---VKLINDDVDAGAEYVIAEARESGKEIGITDNEGEVREGELDSIIKGLG 203 (258)
T ss_pred ----------------------hcChHHH---HHHHHHHHHcchHHhhhhhhhhccccCccccccchhhhHHHHHHhcCC
Confidence 1235666 99999999999999999998 7999999999999999999999
Q ss_pred CCceEEecCCchhHHHHHHHhCCCcccc-cCCCCchhhhhhhcccCCCcc
Q 022296 240 LEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLECLRGRNLGKSH 288 (299)
Q Consensus 240 ~eklifEAP~k~qQ~~fI~~fG~~VNLg-I~~~eVi~LE~LR~~~~G~~~ 288 (299)
++|+|||||+|.||+|||++|||+|||+ |||+||++|||||+|+||.+.
T Consensus 204 i~rviFEAp~k~qq~~fI~k~GpevNLanip~~eii~LEtLR~gLrgdT~ 253 (258)
T COG1809 204 INRVIFEAPQKSQQVWFILKIGPEVNLANIPFEEIIALETLRRGLRGDTF 253 (258)
T ss_pred chheeeecCCcchhhhHHHHhCCcCcccCCCHHHHHHHHHHHhhccccch
Confidence 9999999999999999999999999999 999999999999999888544
No 4
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=97.36 E-value=0.0055 Score=59.56 Aligned_cols=167 Identities=16% Similarity=0.174 Sum_probs=123.3
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH
Q 022296 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (299)
Q Consensus 24 ~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~ 103 (299)
.=+++++.||. + ..+|+-.....-+|.+.++.. ....+.+++-++.+|++|..++.. ++.+....++.+
T Consensus 78 ~~~~~ll~pg~----~--~~~dl~~a~~~gvd~iri~~~---~~e~~~~~~~i~~ak~~G~~v~~~--l~~a~~~~~e~l 146 (337)
T PRK08195 78 AKIAALLLPGI----G--TVDDLKMAYDAGVRVVRVATH---CTEADVSEQHIGLARELGMDTVGF--LMMSHMAPPEKL 146 (337)
T ss_pred CEEEEEeccCc----c--cHHHHHHHHHcCCCEEEEEEe---cchHHHHHHHHHHHHHCCCeEEEE--EEeccCCCHHHH
Confidence 45677778876 2 346776667778999998864 445568999999999999877653 233334455678
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcc
Q 022296 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFL 183 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~ 183 (299)
.++.+.+.++|.++|-|.|-.-.+.+++-.++|+.++++ +.....+|..+. + |
T Consensus 147 ~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~-l~~~i~ig~H~H--n-----n------------------- 199 (337)
T PRK08195 147 AEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAA-LKPDTQVGFHGH--N-----N------------------- 199 (337)
T ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHh-cCCCCeEEEEeC--C-----C-------------------
Confidence 888889999999999999999999999999999999983 111223455311 0 1
Q ss_pred cCCCccchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhccCC
Q 022296 184 ASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLGL 240 (299)
Q Consensus 184 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~l~~ 240 (299)
...- +..+...++|||+ +|++. |+=...||..++.+-..+++.|.
T Consensus 200 -------lGla---~ANslaAi~aGa~--~iD~Sl~GlG~~aGN~~tE~lv~~L~~~g~ 246 (337)
T PRK08195 200 -------LGLG---VANSLAAVEAGAT--RIDGSLAGLGAGAGNTPLEVLVAVLDRMGW 246 (337)
T ss_pred -------cchH---HHHHHHHHHhCCC--EEEecChhhcccccCccHHHHHHHHHhcCC
Confidence 2333 5666788999999 67886 88889999999988777766553
No 5
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=97.24 E-value=0.0041 Score=57.15 Aligned_cols=159 Identities=18% Similarity=0.236 Sum_probs=92.2
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCccccee-eeecCCCCCCC
Q 022296 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKF-AVMFNKSDIPS 161 (299)
Q Consensus 90 tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~G~~v~~E~-gvK~~~sevg~ 161 (299)
|.+|+++.++ -.+++.++.++++||++||++-.. ..++.++..++-+.+++.|+++.+-- +...+. ..++
T Consensus 11 ~~~~~~~~~~-~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~-~~~~ 88 (283)
T PRK13209 11 GIYEKALPAG-ECWLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRF-PLGS 88 (283)
T ss_pred eeecccCCCC-CCHHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeEEeccccccc-CCCC
Confidence 6789999765 379999999999999999998543 24477778788888889999865411 110000 0000
Q ss_pred cccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCC--ccc---H---HHHHH
Q 022296 162 DRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHAD--SLR---A---DIIAK 233 (299)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G--~~r---~---d~i~~ 233 (299)
.|+ . . .+...+.+ .+.++.+-+.|+.+|.+-+........ ... . ..+.+
T Consensus 89 -~~~--------~--~---------r~~~~~~~---~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 145 (283)
T PRK13209 89 -EDD--------A--V---------RAQALEIM---RKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVE 145 (283)
T ss_pred -CCH--------H--H---------HHHHHHHH---HHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHH
Confidence 000 0 0 00012334 455677778999999986542211111 100 1 22333
Q ss_pred HHhccCCCceEEec---C---CchhHHHHHHHhC-CCcccccCCCCch
Q 022296 234 VIGRLGLEKTMFEA---T---NPRTSEWFIRRYG-PKVNLFVDHSQVM 274 (299)
Q Consensus 234 ii~~l~~eklifEA---P---~k~qQ~~fI~~fG-~~VNLgI~~~eVi 274 (299)
+++..|+ +|.+|. + ...+-..+++..| |+|.|..|+..+.
T Consensus 146 ~A~~~GV-~i~iE~~~~~~~~~~~~~~~ll~~v~~~~lgl~~D~~h~~ 192 (283)
T PRK13209 146 LASRASV-TLAFEIMDTPFMNSISKALGYAHYLNSPWFQLYPDIGNLS 192 (283)
T ss_pred HHHHhCC-EEEEeecCCcccCCHHHHHHHHHHhCCCccceEeccchHH
Confidence 3444454 577775 1 3334556788888 5666656665555
No 6
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=97.19 E-value=0.011 Score=57.31 Aligned_cols=167 Identities=15% Similarity=0.156 Sum_probs=122.8
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH
Q 022296 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (299)
Q Consensus 24 ~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~ 103 (299)
.=+++++.||. + ..+|+=.....-||.+-++.. ....+.+++-|+.+|+.|..++.. ++.+....|+.+
T Consensus 77 ~~~~~ll~pg~----~--~~~dl~~a~~~gvd~iri~~~---~~e~d~~~~~i~~ak~~G~~v~~~--l~~s~~~~~e~l 145 (333)
T TIGR03217 77 AKVAVLLLPGI----G--TVHDLKAAYDAGARTVRVATH---CTEADVSEQHIGMARELGMDTVGF--LMMSHMTPPEKL 145 (333)
T ss_pred CEEEEEeccCc----c--CHHHHHHHHHCCCCEEEEEec---cchHHHHHHHHHHHHHcCCeEEEE--EEcccCCCHHHH
Confidence 45788888886 2 345655555567999998864 445568999999999999877642 223334556688
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcc
Q 022296 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFL 183 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~ 183 (299)
.++.+.+.+.|.++|-|.|-.-.+.+++-.++|+.++++ +..-.++|..+.. |
T Consensus 146 ~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~-l~~~i~ig~H~Hn-------n------------------- 198 (333)
T TIGR03217 146 AEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAV-LKPETQVGFHAHH-------N------------------- 198 (333)
T ss_pred HHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHh-CCCCceEEEEeCC-------C-------------------
Confidence 888899999999999999999999999999999999973 2211235553110 1
Q ss_pred cCCCccchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhccCC
Q 022296 184 ASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLGL 240 (299)
Q Consensus 184 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~l~~ 240 (299)
...- +-.+...++|||++ |++. |+=...||.-++.+-..+++.|.
T Consensus 199 -------lGla---~ANslaAi~aGa~~--iD~Sl~G~G~~aGN~~~E~lv~~l~~~g~ 245 (333)
T TIGR03217 199 -------LSLA---VANSIAAIEAGATR--IDASLRGLGAGAGNAPLEVFVAVLDRLGW 245 (333)
T ss_pred -------CchH---HHHHHHHHHhCCCE--EEeecccccccccCccHHHHHHHHHhcCC
Confidence 2333 55667889999998 6775 89999999999988877776553
No 7
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=97.02 E-value=0.017 Score=54.30 Aligned_cols=164 Identities=12% Similarity=0.126 Sum_probs=116.0
Q ss_pred CCCCCCcchhHHHHHHHhhccc-ccEEEeeCcccccCChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHH
Q 022296 32 PHYTLSSSHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVED 109 (299)
Q Consensus 32 kGl~~~~g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~ 109 (299)
+|+... ..+..++.++.+.+. +|.+-+...++-+ +.+++-++.++++|..+... .. +.+-...++.+.++.+.
T Consensus 83 ~~~~~~-p~~~~~~di~~~~~~g~~~iri~~~~~~~---~~~~~~i~~ak~~G~~v~~~i~~-~~~~~~~~~~~~~~~~~ 157 (275)
T cd07937 83 VGYRHY-PDDVVELFVEKAAKNGIDIFRIFDALNDV---RNLEVAIKAVKKAGKHVEGAICY-TGSPVHTLEYYVKLAKE 157 (275)
T ss_pred cCccCC-CcHHHHHHHHHHHHcCCCEEEEeecCChH---HHHHHHHHHHHHCCCeEEEEEEe-cCCCCCCHHHHHHHHHH
Confidence 555444 334567777776665 8999998766653 57999999999999876542 11 11112334578888899
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCcc
Q 022296 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEI 189 (299)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (299)
+.++|.+.|-+.|-.-.+.+++-.++|+.++++ +. ..+++.+. .+
T Consensus 158 ~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~--~~l~~H~H-nd------------------------------- 202 (275)
T cd07937 158 LEDMGADSICIKDMAGLLTPYAAYELVKALKKE-VG--LPIHLHTH-DT------------------------------- 202 (275)
T ss_pred HHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHh-CC--CeEEEEec-CC-------------------------------
Confidence 999999999999999999999999999999984 11 23444321 11
Q ss_pred chhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccC
Q 022296 190 EVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 190 ~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~ 239 (299)
.... ...+...++|||++|=.=--|+=+..||..++.+-..+...|
T Consensus 203 -~GlA---~aN~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~~L~~~g 248 (275)
T cd07937 203 -SGLA---VATYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVAALRGTG 248 (275)
T ss_pred -CChH---HHHHHHHHHhCCCEEEEecccccCCcCChhHHHHHHHHHccC
Confidence 2233 556678899999975444448888899999888877776554
No 8
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=96.99 E-value=0.008 Score=55.68 Aligned_cols=152 Identities=18% Similarity=0.249 Sum_probs=110.3
Q ss_pred HHHHHhhcccccEEEeeCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHH
Q 022296 44 EDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQ 112 (299)
Q Consensus 44 ~DlLe~ag~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~ 112 (299)
+|+=......+|.+.+...+|-.+.+ +.+++-++.++++|..|+.+- |.+-...++.+.++.+.+.+
T Consensus 73 ~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~--~~~~~~~~~~~~~~~~~~~~ 150 (259)
T cd07939 73 EDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA--EDASRADPDFLIEFAEVAQE 150 (259)
T ss_pred HHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee--ccCCCCCHHHHHHHHHHHHH
Confidence 34333344568999998877766432 356789999999999888653 23333445678888889999
Q ss_pred cCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchh
Q 022296 113 VGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVG 192 (299)
Q Consensus 113 lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (299)
.|.+.|-+.|-+-.+.+++-.++|+.+++. +. ..++..+.. + ..
T Consensus 151 ~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~--~~l~~H~Hn-~--------------------------------~G 194 (259)
T cd07939 151 AGADRLRFADTVGILDPFTTYELIRRLRAA-TD--LPLEFHAHN-D--------------------------------LG 194 (259)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHHHHHh-cC--CeEEEEecC-C--------------------------------CC
Confidence 999999999999999999999999999974 22 235553221 1 22
Q ss_pred hhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhcc
Q 022296 193 VGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 193 ~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~l 238 (299)
.. ...+-..+++||++ |++. |+=+..||.-++.+-..+...
T Consensus 195 la---~An~laAi~aG~~~--vd~s~~G~G~~aGN~~tE~lv~~l~~~ 237 (259)
T cd07939 195 LA---TANTLAAVRAGATH--VSVTVNGLGERAGNAALEEVVMALKHL 237 (259)
T ss_pred hH---HHHHHHHHHhCCCE--EEEecccccccccCcCHHHHHHHHHHh
Confidence 23 55667789999986 5886 888999999988877666544
No 9
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=96.85 E-value=0.034 Score=51.59 Aligned_cols=165 Identities=16% Similarity=0.171 Sum_probs=118.3
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH
Q 022296 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (299)
Q Consensus 24 ~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~ 103 (299)
.-++++..++. + ..+|+-.....-+|.+-+..-.+- .+.+++-++.+|++|..+...- +.+..-.|+.+
T Consensus 75 ~~~~~~~~~~~----~--~~~~i~~a~~~g~~~iri~~~~s~---~~~~~~~i~~ak~~G~~v~~~~--~~~~~~~~~~~ 143 (263)
T cd07943 75 AKLGVLLLPGI----G--TVDDLKMAADLGVDVVRVATHCTE---ADVSEQHIGAARKLGMDVVGFL--MMSHMASPEEL 143 (263)
T ss_pred CEEEEEecCCc----c--CHHHHHHHHHcCCCEEEEEechhh---HHHHHHHHHHHHHCCCeEEEEE--EeccCCCHHHH
Confidence 34555666655 2 246665556667999888765553 3579999999999998776531 22333445678
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcc
Q 022296 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFL 183 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~ 183 (299)
.++.+.+.+.|.+.|-+.|-+-.+.+++-.++++.++++ +.. -.++..+. . |
T Consensus 144 ~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~-~~l~~H~H-n------~------------------- 195 (263)
T cd07943 144 AEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREA-LDP-TPVGFHGH-N------N------------------- 195 (263)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHh-CCC-ceEEEEec-C------C-------------------
Confidence 888999999999999999999999999999999999984 111 13555321 1 1
Q ss_pred cCCCccchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhccC
Q 022296 184 ASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 184 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~l~ 239 (299)
.... +..+...++|||++ |++. |+=+..||..++.+-..++..+
T Consensus 196 -------~GlA---~AN~laAi~aGa~~--vd~s~~GlG~~aGN~~~E~lv~~L~~~g 241 (263)
T cd07943 196 -------LGLA---VANSLAAVEAGATR--IDGSLAGLGAGAGNTPLEVLVAVLERMG 241 (263)
T ss_pred -------cchH---HHHHHHHHHhCCCE--EEeecccccCCcCCccHHHHHHHHHhcC
Confidence 2333 66668889999996 6776 8888899999988777666544
No 10
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=96.83 E-value=0.013 Score=52.90 Aligned_cols=156 Identities=24% Similarity=0.239 Sum_probs=106.8
Q ss_pred hHHHHHHH-hhcccccEEEeeCcccccCC-----------hhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHH
Q 022296 41 NVLEDIFE-SMGQFVDGLKFSGGSHSLMP-----------KPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVE 108 (299)
Q Consensus 41 ~~l~DlLe-~ag~yID~lKfg~GTs~l~p-----------~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~ 108 (299)
...+..++ ....=+|.+-+...+|-++. -+.+++-++.++++|..++.+. |.+-...++.+.++.+
T Consensus 67 ~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~--~~~~~~~~~~~~~~~~ 144 (237)
T PF00682_consen 67 EDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGC--EDASRTDPEELLELAE 144 (237)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEE--TTTGGSSHHHHHHHHH
T ss_pred HHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCc--cccccccHHHHHHHHH
Confidence 34444333 23355777777776665222 3467888999999999997762 2222344557888999
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCc
Q 022296 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPE 188 (299)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 188 (299)
.+.++|.+.|-|.|..-.+.+++-.++|+.+++.--. .+++.... . |
T Consensus 145 ~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~--~~l~~H~H-n------d------------------------ 191 (237)
T PF00682_consen 145 ALAEAGADIIYLADTVGIMTPEDVAELVRALREALPD--IPLGFHAH-N------D------------------------ 191 (237)
T ss_dssp HHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTT--SEEEEEEB-B------T------------------------
T ss_pred HHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccC--CeEEEEec-C------C------------------------
Confidence 9999999999999999999999999999999995332 34555321 1 1
Q ss_pred cchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhcc
Q 022296 189 IEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 189 ~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~l 238 (299)
.... +..+-..++|||++| ++- |+=+..||...+.+-..+...
T Consensus 192 --~Gla---~An~laA~~aGa~~i--d~t~~GlG~~~Gn~~le~lv~~L~~~ 236 (237)
T PF00682_consen 192 --LGLA---VANALAALEAGADRI--DGTLGGLGERAGNAPLEELVAALERM 236 (237)
T ss_dssp --TS-H---HHHHHHHHHTT-SEE--EEBGGGGSSTTSB-BHHHHHHHHHHT
T ss_pred --ccch---hHHHHHHHHcCCCEE--EccCccCCCCCCCccHHHHHHHHhhc
Confidence 2333 666788999999994 665 899999999988877666544
No 11
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=96.81 E-value=0.0064 Score=55.12 Aligned_cols=153 Identities=20% Similarity=0.253 Sum_probs=110.3
Q ss_pred HHHHHHHhhcccccEEEeeCcccccC-----------ChhHHHHHHHHHHhCCceecCCcHHHHHHH--hCCchHHHHHH
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLM-----------PKPFIEEVVKRAHQHDVYVSTGDWAEHLIR--NGPSAFKEYVE 108 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~-----------p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~--qg~~~~~~yl~ 108 (299)
.++.+.+. | +|.+-+...++-.+ ..+.+.+-++.++++|+.+... +|.+.. .+++.+.++++
T Consensus 79 ~i~~a~~~-g--~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~--~~~~~~~~~~~~~l~~~~~ 153 (265)
T cd03174 79 GIERALEA-G--VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGS--LEDAFGCKTDPEYVLEVAK 153 (265)
T ss_pred hHHHHHhC-C--cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE--EEeecCCCCCHHHHHHHHH
Confidence 44444443 3 78888887766211 1245888999999999977653 122223 56668999999
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCc
Q 022296 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPE 188 (299)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 188 (299)
.+.++|.+.|-+.|-+-.+.+++-.++|+.+++.-=. ..++..+. . |
T Consensus 154 ~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~--~~~~~H~H-n------~------------------------ 200 (265)
T cd03174 154 ALEEAGADEISLKDTVGLATPEEVAELVKALREALPD--VPLGLHTH-N------T------------------------ 200 (265)
T ss_pred HHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCC--CeEEEEeC-C------C------------------------
Confidence 9999999999999999999999999999999984211 23444211 1 1
Q ss_pred cchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhccC
Q 022296 189 IEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 189 ~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~l~ 239 (299)
.... +..+-..++|||++ |++- |+=+..||..++.+-..++..+
T Consensus 201 --~gla---~an~laA~~aG~~~--id~s~~G~G~~~Gn~~~e~~~~~l~~~~ 246 (265)
T cd03174 201 --LGLA---VANSLAALEAGADR--VDGSVNGLGERAGNAATEDLVAALEGLG 246 (265)
T ss_pred --CChH---HHHHHHHHHcCCCE--EEeccccccccccCccHHHHHHHHHhcC
Confidence 2334 66678899999977 5886 8889999999998887777655
No 12
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=96.62 E-value=0.015 Score=56.70 Aligned_cols=121 Identities=16% Similarity=0.328 Sum_probs=87.5
Q ss_pred ccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc----
Q 022296 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE---- 126 (299)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~---- 126 (299)
..||-+-||+||.++.|.+.|++.++..+++.. .|+.+.-+|+.+ ++.++.+++.||+.|.|.--|.+
T Consensus 57 ~~i~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~-------~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L 129 (370)
T PRK06294 57 HFIDTVFFGGGTPSLVPPALIQDILKTLEAPHA-------TEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLL 129 (370)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHhCCC-------CeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHH
Confidence 458899999999999999999999999987622 133334466665 78999999999999988766662
Q ss_pred ------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHH
Q 022296 127 ------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSR 199 (299)
Q Consensus 127 ------i~~~~r~~lI~~~~~~G~~-v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 199 (299)
-+.++-.+.|+.+++.||. +.-.+ .++. | ..+.+.+ .+
T Consensus 130 ~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dl--i~Gl----------------P--------------gqt~~~~---~~ 174 (370)
T PRK06294 130 KLLGRTHSSSKAIDAVQECSEHGFSNLSIDL--IYGL----------------P--------------TQSLSDF---IV 174 (370)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCeEEEEe--ecCC----------------C--------------CCCHHHH---HH
Confidence 3455666788899999886 22221 1111 1 0125667 78
Q ss_pred HHHHHHHccCcEEEE
Q 022296 200 RAERCLEAGADMIMI 214 (299)
Q Consensus 200 ~~~~dLeAGA~~VIi 214 (299)
.++..++.+.+.|-+
T Consensus 175 ~l~~~~~l~~~~is~ 189 (370)
T PRK06294 175 DLHQAITLPITHISL 189 (370)
T ss_pred HHHHHHccCCCeEEE
Confidence 888889999987754
No 13
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=96.60 E-value=0.024 Score=54.91 Aligned_cols=123 Identities=15% Similarity=0.226 Sum_probs=89.5
Q ss_pred cccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc-----
Q 022296 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE----- 126 (299)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~----- 126 (299)
-|+.+-||+||..+.|.+.+++.++..+++ +.++ .|+.+.-+|+.+ ++.++.+++.||+.|.|+--|.+
T Consensus 51 ~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~---~~~~--~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~ 125 (350)
T PRK08446 51 KIESVFIGGGTPSTVSAKFYEPIFEIISPY---LSKD--CEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLK 125 (350)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHh---cCCC--ceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 589999999999999999999999999988 2333 255454455543 78999999999999998776662
Q ss_pred -----CChhHHHHHHHHHHHcCCccc-ceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHH
Q 022296 127 -----IPEETLLRYVRLVKSAGLKAK-PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRR 200 (299)
Q Consensus 127 -----i~~~~r~~lI~~~~~~G~~v~-~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 200 (299)
-+.++-.+.|+.+++.||..+ ..+-. +. |. .+.+.+ .+.
T Consensus 126 ~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~--Gl----------------Pg--------------qt~~~~---~~~ 170 (350)
T PRK08446 126 FLGRIHSQKQIIKAIENAKKAGFENISIDLIY--DT----------------PL--------------DNKKLL---KEE 170 (350)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCCEEEEEeec--CC----------------CC--------------CCHHHH---HHH
Confidence 345666789999999998622 22211 11 10 125666 777
Q ss_pred HHHHHHccCcEEEEe
Q 022296 201 AERCLEAGADMIMID 215 (299)
Q Consensus 201 ~~~dLeAGA~~VIiE 215 (299)
++..++.|++.|-+-
T Consensus 171 l~~~~~l~~~~is~y 185 (350)
T PRK08446 171 LKLAKELPINHLSAY 185 (350)
T ss_pred HHHHHhcCCCEEEec
Confidence 788889999988653
No 14
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=96.52 E-value=0.022 Score=53.46 Aligned_cols=163 Identities=13% Similarity=0.148 Sum_probs=118.2
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH
Q 022296 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (299)
Q Consensus 24 ~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~ 103 (299)
.=+..+.+++- ...+|+......-||.+.+++..+. -+.+++-++.++++|..|+.+ +|.+....++.+
T Consensus 72 ~~~~~~~~~~~------~~~~~l~~a~~~gv~~iri~~~~~~---~~~~~~~i~~ak~~G~~v~~~--~~~a~~~~~~~~ 140 (266)
T cd07944 72 TKIAVMVDYGN------DDIDLLEPASGSVVDMIRVAFHKHE---FDEALPLIKAIKEKGYEVFFN--LMAISGYSDEEL 140 (266)
T ss_pred CEEEEEECCCC------CCHHHHHHHhcCCcCEEEEeccccc---HHHHHHHHHHHHHCCCeEEEE--EEeecCCCHHHH
Confidence 34555555552 1466777777788999999987764 356899999999999988764 111223455688
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcc
Q 022296 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFL 183 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~ 183 (299)
.++++.+.+.|.+.|-+.|-.-.+.+++-.++++.++++ +..-..++..+. .|
T Consensus 141 ~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~~~~i~~H~H-------n~------------------- 193 (266)
T cd07944 141 LELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSN-LDKDIKLGFHAH-------NN------------------- 193 (266)
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeC-------CC-------------------
Confidence 899999999999999999999999999999999999873 110012344211 11
Q ss_pred cCCCccchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHh
Q 022296 184 ASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 236 (299)
Q Consensus 184 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~ 236 (299)
.... +..+...++|||+. |++- |+=...||.-++.+-..++
T Consensus 194 -------~Gla---~AN~laA~~aGa~~--vd~s~~G~G~~aGN~~~E~~v~~l~ 236 (266)
T cd07944 194 -------LQLA---LANTLEAIELGVEI--IDATVYGMGRGAGNLPTELLLDYLN 236 (266)
T ss_pred -------ccHH---HHHHHHHHHcCCCE--EEEecccCCCCcCcHHHHHHHHHHH
Confidence 2334 66678889999975 6775 8888999999888766664
No 15
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=96.52 E-value=0.068 Score=48.87 Aligned_cols=158 Identities=16% Similarity=0.231 Sum_probs=87.9
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCcccceeeeecCC-CCCCC
Q 022296 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK-SDIPS 161 (299)
Q Consensus 90 tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~-sevg~ 161 (299)
|.|+.++-++ -.+++.++.++++||+.||++-.. ...+.++..++-+.+++.|+++-+ +..-... -..+.
T Consensus 6 g~~~~~~~~~-~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~-~~~~~~~~~~~~~ 83 (284)
T PRK13210 6 GIYEKALPKH-LSWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPS-MCLSGHRRFPFGS 83 (284)
T ss_pred chhhhhcCCC-CCHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceE-EecccccCcCCCC
Confidence 4566666542 369999999999999999997322 244667778888889999988653 2210000 00000
Q ss_pred cccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccc-cCCC-cccH------HHHHH
Q 022296 162 DRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVC-KHAD-SLRA------DIIAK 233 (299)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~-d~~G-~~r~------d~i~~ 233 (299)
.|+ . .. +-.++.+ .+.++.+-+.||..|.+-+-..+ .... .... ..+.+
T Consensus 84 -~d~--------~--~r---------~~~~~~~---~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 140 (284)
T PRK13210 84 -RDP--------A--TR---------ERALEIM---KKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVE 140 (284)
T ss_pred -CCH--------H--HH---------HHHHHHH---HHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHH
Confidence 010 0 00 0013334 44455566789999988532211 1111 1111 22333
Q ss_pred HHhccCCCceEEec------CCchhHHHHHHHhC-CCcccccCCCCc
Q 022296 234 VIGRLGLEKTMFEA------TNPRTSEWFIRRYG-PKVNLFVDHSQV 273 (299)
Q Consensus 234 ii~~l~~eklifEA------P~k~qQ~~fI~~fG-~~VNLgI~~~eV 273 (299)
+++..|+ +|.+|. +...+-..+++.++ |+|.+..|+..+
T Consensus 141 ~a~~~gv-~l~lE~~~~~~~~~~~~~~~l~~~v~~~~~~~~~D~~h~ 186 (284)
T PRK13210 141 QAAAAQV-MLAVEIMDTPFMNSISKWKKWDKEIDSPWLTVYPDVGNL 186 (284)
T ss_pred HHHHhCC-EEEEEecCccccCCHHHHHHHHHHcCCCceeEEecCChh
Confidence 4444554 577776 23456778899998 445554666554
No 16
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=96.44 E-value=0.099 Score=47.40 Aligned_cols=141 Identities=18% Similarity=0.192 Sum_probs=95.9
Q ss_pred HHHHHhhcccccEEEeeCcccc----cCChhHHHHHHHHHHhCC--ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022296 44 EDIFESMGQFVDGLKFSGGSHS----LMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (299)
Q Consensus 44 ~DlLe~ag~yID~lKfg~GTs~----l~p~~~l~eKI~l~~~~g--V~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (299)
-+.|..+| ||.+=+|+|.+. +++ ...+.++.+++.+ +.+.. +.++ . .+.++.+++.|++.
T Consensus 25 ~~~L~~~G--V~~IEvg~~~~~~~~p~~~--~~~~~i~~l~~~~~~~~~~~-------l~~~--~-~~~i~~a~~~g~~~ 90 (265)
T cd03174 25 AEALDEAG--VDSIEVGSGASPKAVPQME--DDWEVLRAIRKLVPNVKLQA-------LVRN--R-EKGIERALEAGVDE 90 (265)
T ss_pred HHHHHHcC--CCEEEeccCcCccccccCC--CHHHHHHHHHhccCCcEEEE-------EccC--c-hhhHHHHHhCCcCE
Confidence 34445555 999999999987 444 3456666666665 54421 1122 1 67789999999999
Q ss_pred EEecCCcccC------------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccC
Q 022296 118 IELNVGSLEI------------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLAS 185 (299)
Q Consensus 118 IEISdGti~i------------~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~ 185 (299)
|-|+....+. ..+.-.+.|+.+++.|+.+..-+-.- .. +
T Consensus 91 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~--~~---------------~------------ 141 (265)
T cd03174 91 VRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDA--FG---------------C------------ 141 (265)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEee--cC---------------C------------
Confidence 9999876631 34556688999999998643322110 00 0
Q ss_pred CCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhc
Q 022296 186 NPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGR 237 (299)
Q Consensus 186 ~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~ 237 (299)
..+++.+ .+.++...++||+.|. ++|..|...++.+.++++.
T Consensus 142 --~~~~~~l---~~~~~~~~~~g~~~i~-----l~Dt~G~~~P~~v~~li~~ 183 (265)
T cd03174 142 --KTDPEYV---LEVAKALEEAGADEIS-----LKDTVGLATPEEVAELVKA 183 (265)
T ss_pred --CCCHHHH---HHHHHHHHHcCCCEEE-----echhcCCcCHHHHHHHHHH
Confidence 0126677 7888889999999887 7788888888888888753
No 17
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=96.31 E-value=0.046 Score=48.90 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=26.9
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHH
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEV 75 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eK 75 (299)
.......+++..++++|++|.|..-..-+..+.+++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~vk~g~~l~~~~G~~~v~~i 50 (215)
T PRK13813 14 DRERALKIAEELDDYVDAIKVGWPLVLASGLGIIEEL 50 (215)
T ss_pred CHHHHHHHHHhccccCCEEEEcHHHHHhhCHHHHHHH
Confidence 4567788999999999999999655444554444443
No 18
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=96.30 E-value=0.037 Score=53.75 Aligned_cols=124 Identities=19% Similarity=0.236 Sum_probs=88.3
Q ss_pred ccccEEEeeCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc----
Q 022296 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL---- 125 (299)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti---- 125 (299)
..|+-+-||+||..++|.+.|++.++.++++ ++.. . .|..+.-+|+.+ ++.++.++++||+.|.|.--|.
T Consensus 58 ~~i~~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~--~--~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~ 133 (375)
T PRK05628 58 PPVSTVFVGGGTPSLLGAEGLARVLDAVRDTFGLAP--G--AEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHV 133 (375)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCC--C--CEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHH
Confidence 4589999999999999999999999999874 4422 1 133333344444 5799999999999999987666
Q ss_pred ------cCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhH
Q 022296 126 ------EIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKS 198 (299)
Q Consensus 126 ------~i~~~~r~~lI~~~~~~G~~-v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 198 (299)
..+.++-.+.++.+++.||. +...+-. +. | ..+.+.+ .
T Consensus 134 L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~--Gl----------------P--------------gqt~~~~---~ 178 (375)
T PRK05628 134 LAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIY--GT----------------P--------------GESDDDW---R 178 (375)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEec--cC----------------C--------------CCCHHHH---H
Confidence 24566777889999999987 4333222 11 1 0125667 7
Q ss_pred HHHHHHHHccCcEEEE
Q 022296 199 RRAERCLEAGADMIMI 214 (299)
Q Consensus 199 ~~~~~dLeAGA~~VIi 214 (299)
+.++..++.|.+.|-+
T Consensus 179 ~tl~~~~~l~~~~i~~ 194 (375)
T PRK05628 179 ASLDAALEAGVDHVSA 194 (375)
T ss_pred HHHHHHHhcCCCEEEe
Confidence 7788889999988743
No 19
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=96.24 E-value=0.073 Score=49.09 Aligned_cols=156 Identities=18% Similarity=0.266 Sum_probs=89.3
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCcccceeeeecC-CCCCCCcc
Q 022296 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFN-KSDIPSDR 163 (299)
Q Consensus 92 fE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~-~sevg~~~ 163 (299)
|+.++.++ -.+.+-++.++++||++||++-+. .+.+.++...+-+.+++.|+++.+ +..-.. ....+. .
T Consensus 8 ~~~~~~~~-~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~-~~~~~~~~~~l~~-~ 84 (279)
T TIGR00542 8 YEKALPKG-ECWLERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPS-MCLSAHRRFPLGS-K 84 (279)
T ss_pred ehhhCCCC-CCHHHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCcee-eecCCCccCcCCC-c
Confidence 34555532 268888999999999999997443 355788888899999999998753 121000 000000 0
Q ss_pred cccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccc-cCC-CcccHH------HHHHHH
Q 022296 164 DRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVC-KHA-DSLRAD------IIAKVI 235 (299)
Q Consensus 164 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~-d~~-G~~r~d------~i~~ii 235 (299)
| |..+ +...+.+ -+.++.+-+.||..|.+-+.... ... .+.... .+.+++
T Consensus 85 ~--------~~~r-----------~~~~~~~---~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A 142 (279)
T TIGR00542 85 D--------KAVR-----------QQGLEIM---EKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELA 142 (279)
T ss_pred C--------HHHH-----------HHHHHHH---HHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHH
Confidence 1 0000 0113344 45566677889999998775432 111 111111 223344
Q ss_pred hccCCCceEEec---C---CchhHHHHHHHhC-CCcccccCCCCc
Q 022296 236 GRLGLEKTMFEA---T---NPRTSEWFIRRYG-PKVNLFVDHSQV 273 (299)
Q Consensus 236 ~~l~~eklifEA---P---~k~qQ~~fI~~fG-~~VNLgI~~~eV 273 (299)
+..|+ +|.+|. | ...+-..+++..| |+|.+..|+..+
T Consensus 143 ~~~Gv-~l~lE~~~~~~~~t~~~~~~li~~v~~~~v~~~~D~~h~ 186 (279)
T TIGR00542 143 ARAQV-TLAVEIMDTPFMSSISKWLKWDHYLNSPWFTLYPDIGNL 186 (279)
T ss_pred HHcCC-EEEEeeCCCchhcCHHHHHHHHHHcCCCceEEEeCcChh
Confidence 55555 577885 1 3345567888888 555554566544
No 20
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=96.07 E-value=0.11 Score=48.29 Aligned_cols=158 Identities=17% Similarity=0.159 Sum_probs=108.8
Q ss_pred HHHHHHHhhc-ccccEEEeeCcccccC-----------ChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHH
Q 022296 42 VLEDIFESMG-QFVDGLKFSGGSHSLM-----------PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVED 109 (299)
Q Consensus 42 ~l~DlLe~ag-~yID~lKfg~GTs~l~-----------p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~ 109 (299)
.++..++.-. ..+|.+.+...+|-+. .-+.+++-++.++++|..++.+. |.+-...++.+.++.+.
T Consensus 74 ~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~--~~~~~~~~~~~~~~~~~ 151 (268)
T cd07940 74 DIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSA--EDATRTDLDFLIEVVEA 151 (268)
T ss_pred hHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEee--ecCCCCCHHHHHHHHHH
Confidence 4444444322 2289999887665442 11457788999999999888652 22223345577888899
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCcc
Q 022296 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEI 189 (299)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (299)
+.++|.+.|-+.|-+-.+.+++-.++++.+++.==..-..++..+. . |
T Consensus 152 ~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~H-n------~------------------------- 199 (268)
T cd07940 152 AIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCH-N------D------------------------- 199 (268)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEec-C------C-------------------------
Confidence 9999999999999999999999999999999841000012333211 0 1
Q ss_pred chhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhccC
Q 022296 190 EVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 190 ~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~l~ 239 (299)
.... +..+...+++||++ |++. |+=+..||..++.+-..+...+
T Consensus 200 -~GlA---~An~laAi~aG~~~--iD~s~~GlG~~aGN~~tE~lv~~L~~~~ 245 (268)
T cd07940 200 -LGLA---VANSLAAVEAGARQ--VECTINGIGERAGNAALEEVVMALKTRY 245 (268)
T ss_pred -cchH---HHHHHHHHHhCCCE--EEEEeeccccccccccHHHHHHHHHhcc
Confidence 2333 56667889999996 4776 8888999999988877775543
No 21
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=96.00 E-value=0.11 Score=48.91 Aligned_cols=151 Identities=19% Similarity=0.239 Sum_probs=96.6
Q ss_pred HHHHHHhhcccccEEEeeCccc--------ccCChhHHHHHHHHHHhCCceecC-Cc-HHHHHHHhCCc-hHHHHHHHHH
Q 022296 43 LEDIFESMGQFVDGLKFSGGSH--------SLMPKPFIEEVVKRAHQHDVYVST-GD-WAEHLIRNGPS-AFKEYVEDCK 111 (299)
Q Consensus 43 l~DlLe~ag~yID~lKfg~GTs--------~l~p~~~l~eKI~l~~~~gV~v~~-Gt-lfE~a~~qg~~-~~~~yl~~~k 111 (299)
.-..|..+| ||.+=+|+|++ .-.|.+.+++..+...+..+.... |. +.- +..-|. -.++.++.+.
T Consensus 26 ia~~L~~~G--v~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~--~~~~p~~~~~~di~~~~ 101 (275)
T cd07937 26 IAEALDEAG--FFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVG--YRHYPDDVVELFVEKAA 101 (275)
T ss_pred HHHHHHHcC--CCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccC--ccCCCcHHHHHHHHHHH
Confidence 344677778 99999999884 344444444444433222221110 10 000 111122 3788999999
Q ss_pred HcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccch
Q 022296 112 QVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEV 191 (299)
Q Consensus 112 ~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (299)
+.|.+.|-|++..-++ +.-...|+.+++.|++|.. .+.+..+ + ..++
T Consensus 102 ~~g~~~iri~~~~~~~--~~~~~~i~~ak~~G~~v~~--~i~~~~~---~--------------------------~~~~ 148 (275)
T cd07937 102 KNGIDIFRIFDALNDV--RNLEVAIKAVKKAGKHVEG--AICYTGS---P--------------------------VHTL 148 (275)
T ss_pred HcCCCEEEEeecCChH--HHHHHHHHHHHHCCCeEEE--EEEecCC---C--------------------------CCCH
Confidence 9999999998766654 4556799999999987653 4421110 0 0126
Q ss_pred hhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 192 GVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 192 ~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
+.+ ++.++.-.++||+.|- |.|..|...+..+.+++..+
T Consensus 149 ~~~---~~~~~~~~~~Ga~~i~-----l~DT~G~~~P~~v~~lv~~l 187 (275)
T cd07937 149 EYY---VKLAKELEDMGADSIC-----IKDMAGLLTPYAAYELVKAL 187 (275)
T ss_pred HHH---HHHHHHHHHcCCCEEE-----EcCCCCCCCHHHHHHHHHHH
Confidence 677 8888889999999874 78899999988888887654
No 22
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=95.98 E-value=0.17 Score=47.06 Aligned_cols=135 Identities=16% Similarity=0.231 Sum_probs=91.5
Q ss_pred chhHHHHHHHhhcccccEEEe------------eCcccccCChhHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchH
Q 022296 39 SHNVLEDIFESMGQFVDGLKF------------SGGSHSLMPKPFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAF 103 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKf------------g~GTs~l~p~~~l~eKI~l~~~~gV~v~~---GtlfE~a~~qg~~~~ 103 (299)
.+..+..+.+...+|.|++=+ |.|++.+.+++.+.+.++..++.+++|+- -++ .....
T Consensus 78 ~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~-------~~~~~ 150 (231)
T TIGR00736 78 DLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNC-------IPLDE 150 (231)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCC-------CcchH
Confidence 456777777777777777765 67778899999999999999998887763 122 11134
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcc
Q 022296 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFL 183 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~ 183 (299)
.++.+.+.+.|.+.|-|..+.-.-+.-+ .++|+++++. +.-+|=+|. . +|
T Consensus 151 ~~~a~~l~~aGad~i~Vd~~~~g~~~a~-~~~I~~i~~~-~~~ipIIgN---G-gI------------------------ 200 (231)
T TIGR00736 151 LIDALNLVDDGFDGIHVDAMYPGKPYAD-MDLLKILSEE-FNDKIIIGN---N-SI------------------------ 200 (231)
T ss_pred HHHHHHHHHcCCCEEEEeeCCCCCchhh-HHHHHHHHHh-cCCCcEEEE---C-Cc------------------------
Confidence 5778889999999999975443222233 5889999884 111444444 1 11
Q ss_pred cCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCC
Q 022296 184 ASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHA 223 (299)
Q Consensus 184 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~ 223 (299)
.+ .+.+.+.|++||+.||| ||++..++
T Consensus 201 ---~s---------~eda~e~l~~GAd~Vmv-gR~~l~~~ 227 (231)
T TIGR00736 201 ---DD---------IESAKEMLKAGADFVSV-ARAILKGN 227 (231)
T ss_pred ---CC---------HHHHHHHHHhCCCeEEE-cHhhccCC
Confidence 01 45568888999999998 55665443
No 23
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=95.98 E-value=0.56 Score=41.40 Aligned_cols=96 Identities=18% Similarity=0.176 Sum_probs=58.9
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhC-CceecCCc-HHHHHHHhCCchHHHH-HHHHHHcCC
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGD-WAEHLIRNGPSAFKEY-VEDCKQVGF 115 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~Gt-lfE~a~~qg~~~~~~y-l~~~k~lGF 115 (299)
.+.....+.+..+..||++|+|+ +...+.. ++..-++.+.| +..+.-++ ++ +|. .| ++.+.+.|.
T Consensus 10 ~~~~a~~~~~~l~~~v~~iev~~--~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~------d~~---~~~~~~~~~~Ga 77 (206)
T TIGR03128 10 DIEEALELAEKVADYVDIIEIGT--PLIKNEG-IEAVKEMKEAFPDRKVLADLKTM------DAG---EYEAEQAFAAGA 77 (206)
T ss_pred CHHHHHHHHHHcccCeeEEEeCC--HHHHHhC-HHHHHHHHHHCCCCEEEEEEeec------cch---HHHHHHHHHcCC
Confidence 55677778888899999999963 3333321 32222333333 33333332 22 322 34 677889999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHcCCcccce
Q 022296 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPK 149 (299)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E 149 (299)
|+|=+.--+ +...-.++++.+++.|+++.++
T Consensus 78 d~i~vh~~~---~~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 78 DIVTVLGVA---DDATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred CEEEEeccC---CHHHHHHHHHHHHHcCCEEEEE
Confidence 999655322 3445578999999998876664
No 24
>PRK05660 HemN family oxidoreductase; Provisional
Probab=95.96 E-value=0.047 Score=53.47 Aligned_cols=125 Identities=14% Similarity=0.215 Sum_probs=89.5
Q ss_pred ccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc----
Q 022296 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE---- 126 (299)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~---- 126 (299)
.-|+-+=||+||..+.+.+.|.+.++.++++= .+.++ .|+.+.-+|+. -++.++.++++||+.|.|+--+.+
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~-~~~~~--~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L 133 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARL-PFAPD--AEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKL 133 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhC-CCCCC--cEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHH
Confidence 45889999999999999999999999998751 11122 34444444443 358899999999999999876663
Q ss_pred ------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHH
Q 022296 127 ------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRR 200 (299)
Q Consensus 127 ------i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 200 (299)
-+.++-.+.|+.+++.||...+ +...++.. + .+.+.+ .+.
T Consensus 134 ~~l~r~~~~~~~~~ai~~~~~~G~~~v~-~dli~Glp-----g-------------------------qt~~~~---~~~ 179 (378)
T PRK05660 134 KRLGRIHGPDEAKRAAKLAQGLGLRSFN-LDLMHGLP-----D-------------------------QSLEEA---LDD 179 (378)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCCeEE-EEeecCCC-----C-------------------------CCHHHH---HHH
Confidence 3566777889999999997422 22222211 1 125667 788
Q ss_pred HHHHHHccCcEEE
Q 022296 201 AERCLEAGADMIM 213 (299)
Q Consensus 201 ~~~dLeAGA~~VI 213 (299)
++..++.|.+.|-
T Consensus 180 l~~~~~l~p~~is 192 (378)
T PRK05660 180 LRQAIALNPPHLS 192 (378)
T ss_pred HHHHHhcCCCeEE
Confidence 8889999999884
No 25
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=95.96 E-value=0.13 Score=50.63 Aligned_cols=149 Identities=19% Similarity=0.227 Sum_probs=110.2
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHH
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDC 110 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~ 110 (299)
.++..+++ -+|.+-+...+|-++-+ +.+++-++.++++|..|+.+ +|.+-..+++.+.++++.+
T Consensus 80 di~~a~~~---g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~--~ed~~r~~~~~l~~~~~~~ 154 (378)
T PRK11858 80 DIDASIDC---GVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS--AEDASRTDLDFLIEFAKAA 154 (378)
T ss_pred HHHHHHhC---CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE--eccCCCCCHHHHHHHHHHH
Confidence 44444443 47888888887776433 45778899999999988765 4555556667889999999
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccc
Q 022296 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIE 190 (299)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (299)
.+.|.+.|-+.|-.-.+.+++-.++|+.+++.= . ..+++.+. . |
T Consensus 155 ~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~-~--~~l~~H~H-n------d-------------------------- 198 (378)
T PRK11858 155 EEAGADRVRFCDTVGILDPFTMYELVKELVEAV-D--IPIEVHCH-N------D-------------------------- 198 (378)
T ss_pred HhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-C--CeEEEEec-C------C--------------------------
Confidence 999999999999999999999999999998752 2 23555322 1 1
Q ss_pred hhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHh
Q 022296 191 VGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 236 (299)
Q Consensus 191 ~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~ 236 (299)
.... .-.+...++|||++| ++- |+=+..||...+.+-..+.
T Consensus 199 ~GlA---~AN~laAv~aGa~~v--d~tv~GlGeraGNa~lE~vv~~L~ 241 (378)
T PRK11858 199 FGMA---TANALAGIEAGAKQV--HTTVNGLGERAGNAALEEVVMALK 241 (378)
T ss_pred cCHH---HHHHHHHHHcCCCEE--EEeeccccccccCccHHHHHHHHH
Confidence 2233 555677899999975 664 8889999999887665554
No 26
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=95.80 E-value=0.056 Score=54.07 Aligned_cols=127 Identities=17% Similarity=0.336 Sum_probs=87.6
Q ss_pred cccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 022296 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 126 (299)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~----- 126 (299)
-|+-+-||+||..+++.+.+.+.++.++++ ..+..+ .|+.+.-+|+. -++.++.+++.||+.|.|+--+.+
T Consensus 102 ~v~~I~fgGGtP~~l~~~~l~~ll~~i~~~-~~~~~~--~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~ 178 (455)
T TIGR00538 102 HVSQLHWGGGTPTYLSPEQISRLMKLIREN-FPFNAD--AEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQ 178 (455)
T ss_pred ceEEEEECCCCcCCCCHHHHHHHHHHHHHh-CCCCCC--CeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHH
Confidence 477889999999999999999999999986 111112 23333233333 368999999999999999866653
Q ss_pred -----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHH
Q 022296 127 -----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRA 201 (299)
Q Consensus 127 -----i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 201 (299)
-+.++-.+.|+.+++.|++.. -+...++.. + .+.+.+ .+.+
T Consensus 179 ~l~r~~~~~~~~~ai~~l~~~G~~~v-~~dli~GlP-----g-------------------------qt~e~~---~~tl 224 (455)
T TIGR00538 179 AVNRIQPEEMIFELMNHAREAGFTSI-NIDLIYGLP-----K-------------------------QTKESF---AKTL 224 (455)
T ss_pred HhCCCCCHHHHHHHHHHHHhcCCCcE-EEeEEeeCC-----C-------------------------CCHHHH---HHHH
Confidence 455666789999999998621 122222211 1 125666 7777
Q ss_pred HHHHHccCcEEEEec
Q 022296 202 ERCLEAGADMIMIDS 216 (299)
Q Consensus 202 ~~dLeAGA~~VIiEa 216 (299)
+..++.|++.|-+-.
T Consensus 225 ~~~~~l~~~~is~y~ 239 (455)
T TIGR00538 225 EKVAELNPDRLAVFN 239 (455)
T ss_pred HHHHhcCCCEEEEec
Confidence 888889999886653
No 27
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=95.74 E-value=0.16 Score=49.70 Aligned_cols=147 Identities=19% Similarity=0.243 Sum_probs=108.0
Q ss_pred cccccEEEeeCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 022296 51 GQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (299)
Q Consensus 51 g~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IE 119 (299)
..-+|.+-+...+|-++-+ +.+++-|+.++++|..|+.+ +|.+-...++.+.++.+.+.+.|.+.|-
T Consensus 83 ~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~--~ed~~r~~~~~l~~~~~~~~~~Ga~~i~ 160 (365)
T TIGR02660 83 RCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVG--GEDASRADPDFLVELAEVAAEAGADRFR 160 (365)
T ss_pred cCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEe--ecCCCCCCHHHHHHHHHHHHHcCcCEEE
Confidence 3457888888877754332 23558899999999988866 4555556667888999999999999999
Q ss_pred ecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHH
Q 022296 120 LNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSR 199 (299)
Q Consensus 120 ISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 199 (299)
+.|-.--+.+++-.++|+.+++. +.+ .+++.+. .+ .... +-
T Consensus 161 l~DT~G~~~P~~v~~lv~~l~~~-~~v--~l~~H~H-Nd--------------------------------~GlA---~A 201 (365)
T TIGR02660 161 FADTVGILDPFSTYELVRALRQA-VDL--PLEMHAH-ND--------------------------------LGMA---TA 201 (365)
T ss_pred EcccCCCCCHHHHHHHHHHHHHh-cCC--eEEEEec-CC--------------------------------CChH---HH
Confidence 99999999999999999999874 122 2454321 11 2233 55
Q ss_pred HHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHH-hccCC
Q 022296 200 RAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVI-GRLGL 240 (299)
Q Consensus 200 ~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii-~~l~~ 240 (299)
.+...++|||++| ++- |+=+..||.-.+.+-..+ ...|.
T Consensus 202 NalaA~~aGa~~v--d~tl~GiGeraGN~~lE~lv~~L~~~~g~ 243 (365)
T TIGR02660 202 NTLAAVRAGATHV--NTTVNGLGERAGNAALEEVAMALKRLLGR 243 (365)
T ss_pred HHHHHHHhCCCEE--EEEeeccccccccCCHHHHHHHHHHhcCC
Confidence 6678999999964 765 888999999888776665 43443
No 28
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=95.70 E-value=0.13 Score=50.14 Aligned_cols=151 Identities=13% Similarity=0.172 Sum_probs=102.1
Q ss_pred ccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc-----
Q 022296 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL----- 125 (299)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti----- 125 (299)
..++-+=||+||..+.+.+.|++.++.++++ + .++ .|+.+.-+|+.+ ++.++.+++.|++.|.|.--|.
T Consensus 55 ~~~~tiy~GGGTPs~L~~~~l~~ll~~i~~~-~--~~~--~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL 129 (353)
T PRK05904 55 KQFKTIYLGGGTPNCLNDQLLDILLSTIKPY-V--DNN--CEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNIL 129 (353)
T ss_pred CCeEEEEECCCccccCCHHHHHHHHHHHHHh-c--CCC--CeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHH
Confidence 5588899999999999999999999999997 2 223 355555566654 6999999999999998876665
Q ss_pred -----cCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHH
Q 022296 126 -----EIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSR 199 (299)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~-v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 199 (299)
.-+.++-.+.|+.+++.||. +-..+ .++. |. .+.+.+ .+
T Consensus 130 ~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dl--I~Gl----------------Pg--------------qt~e~~---~~ 174 (353)
T PRK05904 130 KQLNRTHTIQDSKEAINLLHKNGIYNISCDF--LYCL----------------PI--------------LKLKDL---DE 174 (353)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCcEEEEE--eecC----------------CC--------------CCHHHH---HH
Confidence 34566777899999999986 22222 1111 10 114556 66
Q ss_pred HHHHHHHccCcEEEEecc------ccccCCCcccH-------HHHHHHHhccCCCc
Q 022296 200 RAERCLEAGADMIMIDSD------DVCKHADSLRA-------DIIAKVIGRLGLEK 242 (299)
Q Consensus 200 ~~~~dLeAGA~~VIiEar------gi~d~~G~~r~-------d~i~~ii~~l~~ek 242 (299)
.++...+.+.++|-+-.= .+++....+.. ..+.+++...|.++
T Consensus 175 tl~~~~~l~p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ 230 (353)
T PRK05904 175 VFNFILKHKINHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNKLNYKR 230 (353)
T ss_pred HHHHHHhcCCCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHHcCCcE
Confidence 677778899998866541 24443322322 23455566666554
No 29
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=95.69 E-value=0.11 Score=51.40 Aligned_cols=125 Identities=17% Similarity=0.273 Sum_probs=88.4
Q ss_pred ccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc-----
Q 022296 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL----- 125 (299)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti----- 125 (299)
.-|+-+=||+||..++|.+.|++.++..+++ ..+.+. .|+.+.-+|+.+ ++.++.+++.|++.|.|.--|.
T Consensus 65 ~~i~~iy~GGGTps~l~~~~l~~ll~~i~~~-~~~~~~--~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L 141 (400)
T PRK07379 65 QPLQTVFFGGGTPSLLSVEQLERILTTLDQR-FGIAPD--AEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELL 141 (400)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHHh-CCCCCC--CEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHH
Confidence 4589999999999999999999999999876 222222 244444445444 5799999999999998876655
Q ss_pred -----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHH
Q 022296 126 -----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRR 200 (299)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 200 (299)
..+.++-.+.++.+++.||.... +...++. |. .+.+.+ .+.
T Consensus 142 ~~l~R~~~~~~~~~ai~~l~~~G~~~v~-~dlI~Gl----------------Pg--------------qt~e~~---~~t 187 (400)
T PRK07379 142 ALCGRSHRVKDIFAAVDLIHQAGIENFS-LDLISGL----------------PH--------------QTLEDW---QAS 187 (400)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCCeEE-EEeecCC----------------CC--------------CCHHHH---HHH
Confidence 45667778899999999987211 1222221 10 125566 777
Q ss_pred HHHHHHccCcEEE
Q 022296 201 AERCLEAGADMIM 213 (299)
Q Consensus 201 ~~~dLeAGA~~VI 213 (299)
++..++.+.+.|-
T Consensus 188 l~~~~~l~p~~is 200 (400)
T PRK07379 188 LEAAIALNPTHLS 200 (400)
T ss_pred HHHHHcCCCCEEE
Confidence 8888889998883
No 30
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=95.67 E-value=0.068 Score=51.77 Aligned_cols=125 Identities=14% Similarity=0.207 Sum_probs=87.8
Q ss_pred cccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc-----
Q 022296 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE----- 126 (299)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~----- 126 (299)
-|+.+=||+||..+.+++.|.+.++..+++- .+..+ .|+.+.-+|+.+ ++.++.++++|++.|.|+--+.+
T Consensus 51 ~v~~i~~GGGtPs~l~~~~l~~ll~~i~~~~-~~~~~--~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~ 127 (360)
T TIGR00539 51 PLESIFIGGGTPNTLSVEAFERLFESIYQHA-SLSDD--CEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLL 127 (360)
T ss_pred cccEEEeCCCchhcCCHHHHHHHHHHHHHhC-CCCCC--CEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHH
Confidence 4889999999999999999999999987641 11122 344444455544 58899999999999999877662
Q ss_pred -----CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHH
Q 022296 127 -----IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRR 200 (299)
Q Consensus 127 -----i~~~~r~~lI~~~~~~G~~-v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 200 (299)
-+.++-.+.|+.+++.||. +...+ .++. |. .+.+.+ .+.
T Consensus 128 ~lgR~~~~~~~~~ai~~l~~~G~~~v~~dl--i~Gl----------------Pg--------------qt~~~~---~~~ 172 (360)
T TIGR00539 128 FLGRQHSAKNIAPAIETALKSGIENISLDL--MYGL----------------PL--------------QTLNSL---KEE 172 (360)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCCeEEEec--cCCC----------------CC--------------CCHHHH---HHH
Confidence 4667778899999999986 22211 1111 10 125566 677
Q ss_pred HHHHHHccCcEEEEe
Q 022296 201 AERCLEAGADMIMID 215 (299)
Q Consensus 201 ~~~dLeAGA~~VIiE 215 (299)
++..++.|++.|-+=
T Consensus 173 l~~~~~l~~~~is~y 187 (360)
T TIGR00539 173 LKLAKELPINHLSAY 187 (360)
T ss_pred HHHHHccCCCEEEee
Confidence 788888999888543
No 31
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=95.57 E-value=0.21 Score=49.21 Aligned_cols=157 Identities=15% Similarity=0.130 Sum_probs=106.1
Q ss_pred hhHHHHHHHhhcccccEEEeeCcccccC--------ChhHH---HHHHHHHHhCCceec------CCcHHHHHHHhCCch
Q 022296 40 HNVLEDIFESMGQFVDGLKFSGGSHSLM--------PKPFI---EEVVKRAHQHDVYVS------TGDWAEHLIRNGPSA 102 (299)
Q Consensus 40 ~~~l~DlLe~ag~yID~lKfg~GTs~l~--------p~~~l---~eKI~l~~~~gV~v~------~GtlfE~a~~qg~~~ 102 (299)
...++..+++- +|.+-+...+|-.+ +++.+ ++-|++++++|..|. .|..++. .-+++.
T Consensus 124 ~~die~A~~~g---~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~--r~~~~~ 198 (347)
T PLN02746 124 LKGFEAAIAAG---AKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEG--PVPPSK 198 (347)
T ss_pred HHHHHHHHHcC---cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccC--CCCHHH
Confidence 34555556553 56666665554322 33334 489999999999773 2433332 235568
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhc
Q 022296 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLF 182 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~ 182 (299)
+.++.+.+.+.|.+.|-|.|-.--+.+.+-.++++.+++. +. ..+++..+.. |
T Consensus 199 l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~-~~-~~~i~~H~Hn-------d------------------ 251 (347)
T PLN02746 199 VAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAV-VP-VDKLAVHFHD-------T------------------ 251 (347)
T ss_pred HHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHh-CC-CCeEEEEECC-------C------------------
Confidence 8899999999999999999999999999999999999874 22 1236664321 1
Q ss_pred ccCCCccchhhhhhhHHHHHHHHHccCcEEEEecccccc------CCCcccHHHHHHHHhccC
Q 022296 183 LASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCK------HADSLRADIIAKVIGRLG 239 (299)
Q Consensus 183 ~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d------~~G~~r~d~i~~ii~~l~ 239 (299)
.... +..+-..++|||++|=.=--||=. ..||.-++.+-..++.+|
T Consensus 252 --------~GlA---~AN~lAA~~aGa~~vd~sv~GlGecPfa~graGN~atE~lv~~L~~~G 303 (347)
T PLN02746 252 --------YGQA---LANILVSLQMGISTVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLG 303 (347)
T ss_pred --------CChH---HHHHHHHHHhCCCEEEEecccccCCCCCCCCCCChhHHHHHHHHHhcC
Confidence 2333 666788999999975333347765 689988777666665444
No 32
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=95.56 E-value=0.26 Score=46.99 Aligned_cols=147 Identities=18% Similarity=0.149 Sum_probs=103.0
Q ss_pred cccccEEEeeCcccccCChh-----------HHHHHHHHHHhCCceec------CCcHHHHHHHhCCchHHHHHHHHHHc
Q 022296 51 GQFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAFKEYVEDCKQV 113 (299)
Q Consensus 51 g~yID~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV~v~------~GtlfE~a~~qg~~~~~~yl~~~k~l 113 (299)
..-+|.+-+...+|-.+.+. .+++-|+.++++|..+. .|..++. .-.++.+.++.+.+.++
T Consensus 90 ~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 167 (287)
T PRK05692 90 AAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEG--EVPPEAVADVAERLFAL 167 (287)
T ss_pred HcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCC--CCCHHHHHHHHHHHHHc
Confidence 33577777777776553332 37789999999999874 2333333 23445788889999999
Q ss_pred CCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhh
Q 022296 114 GFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGV 193 (299)
Q Consensus 114 GF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (299)
|.+.|-+.|-.--+.+.+-.++|+.+++. +.. ..+++.+. .+ ...
T Consensus 168 G~d~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~-~~i~~H~H-n~--------------------------------~Gl 212 (287)
T PRK05692 168 GCYEISLGDTIGVGTPGQVRAVLEAVLAE-FPA-ERLAGHFH-DT--------------------------------YGQ 212 (287)
T ss_pred CCcEEEeccccCccCHHHHHHHHHHHHHh-CCC-CeEEEEec-CC--------------------------------CCc
Confidence 99999999999999999999999999984 211 13555322 11 223
Q ss_pred hhhhHHHHHHHHHccCcEEEEecc--cccc------CCCcccHHHHHHHHhccC
Q 022296 194 GINKSRRAERCLEAGADMIMIDSD--DVCK------HADSLRADIIAKVIGRLG 239 (299)
Q Consensus 194 ~~~~i~~~~~dLeAGA~~VIiEar--gi~d------~~G~~r~d~i~~ii~~l~ 239 (299)
. +..+-..++|||++ +++. ||=. ..||.-.+.+-..++..|
T Consensus 213 a---~AN~laA~~aG~~~--id~s~~GlGecpfa~g~aGN~~~E~lv~~L~~~g 261 (287)
T PRK05692 213 A---LANIYASLEEGITV--FDASVGGLGGCPYAPGASGNVATEDVLYMLHGLG 261 (287)
T ss_pred H---HHHHHHHHHhCCCE--EEEEccccCCCCCCCCccccccHHHHHHHHHhcC
Confidence 3 56667899999997 4554 7755 688988887766665444
No 33
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.54 E-value=0.25 Score=45.84 Aligned_cols=147 Identities=16% Similarity=0.120 Sum_probs=93.8
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCc
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~ 177 (299)
+.++++++++.+.|.+.|=+...+ ..|+.++|.++++.+.+.- ...+.+-. |
T Consensus 18 ~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~---~~~~~vi~-----g----------------- 72 (281)
T cd00408 18 DALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAV---AGRVPVIA-----G----------------- 72 (281)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHh---CCCCeEEE-----e-----------------
Confidence 368899999999999999665443 4899999999999998841 11111100 0
Q ss_pred cchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccCC----CcccH
Q 022296 178 TDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKHA----DSLRA 228 (299)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~~----G~~r~ 228 (299)
+...+..+. +++++..-++|||.|++=.- -||+.- -.+..
T Consensus 73 --------v~~~~~~~~---i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~ 141 (281)
T cd00408 73 --------VGANSTREA---IELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSP 141 (281)
T ss_pred --------cCCccHHHH---HHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCH
Confidence 011124556 89999999999999999763 145442 24556
Q ss_pred HHHHHHHhccC-CCceEEecCCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022296 229 DIIAKVIGRLG-LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 285 (299)
Q Consensus 229 d~i~~ii~~l~-~eklifEAP~k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~~~G 285 (299)
+++.++++ .+ +-=+=...++..+...+++..++++.++... |-.-++.|..|--|
T Consensus 142 ~~~~~L~~-~~~v~giK~s~~d~~~~~~~~~~~~~~~~v~~G~-d~~~~~~l~~G~~G 197 (281)
T cd00408 142 ETIARLAE-HPNIVGIKDSSGDLDRLTRLIALLGPDFAVLSGD-DDLLLPALALGADG 197 (281)
T ss_pred HHHHHHhc-CCCEEEEEeCCCCHHHHHHHHHhcCCCeEEEEcc-hHHHHHHHHcCCCE
Confidence 67776664 22 1112234556667777777777776665444 44555666655433
No 34
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=95.49 E-value=0.19 Score=50.43 Aligned_cols=126 Identities=20% Similarity=0.370 Sum_probs=89.1
Q ss_pred cccEEEeeCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc----
Q 022296 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE---- 126 (299)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~---- 126 (299)
-|+-+=||+||..+.|++.|++.++.++++ ++ .++ .|+.+.-+|..+ ++.++.++++||+.|.|+--+.+
T Consensus 103 ~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~--~~~--~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl 178 (453)
T PRK13347 103 RVSQLHWGGGTPTILNPDQFERLMAALRDAFDF--APE--AEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQ 178 (453)
T ss_pred eEEEEEEcCcccccCCHHHHHHHHHHHHHhCCC--CCC--ceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHH
Confidence 367788999999999999999999999886 22 111 233333334333 78999999999999999876663
Q ss_pred ------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHH
Q 022296 127 ------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRR 200 (299)
Q Consensus 127 ------i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 200 (299)
-+.++-.+.|+.+++.||..+. +...++.. + .+.+.+ .+.
T Consensus 179 ~~l~R~~~~~~~~~ai~~lr~~G~~~v~-~dli~GlP-----g-------------------------qt~e~~---~~t 224 (453)
T PRK13347 179 KAINRIQPEEMVARAVELLRAAGFESIN-FDLIYGLP-----H-------------------------QTVESF---RET 224 (453)
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCCCcEE-EeEEEeCC-----C-------------------------CCHHHH---HHH
Confidence 5677778999999999986211 11111110 1 125667 778
Q ss_pred HHHHHHccCcEEEEec
Q 022296 201 AERCLEAGADMIMIDS 216 (299)
Q Consensus 201 ~~~dLeAGA~~VIiEa 216 (299)
++..++.|.+.|-+-+
T Consensus 225 l~~~~~l~p~~i~~y~ 240 (453)
T PRK13347 225 LDKVIALSPDRIAVFG 240 (453)
T ss_pred HHHHHhcCCCEEEEec
Confidence 8888999999987754
No 35
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=95.47 E-value=0.33 Score=45.56 Aligned_cols=145 Identities=14% Similarity=0.131 Sum_probs=101.5
Q ss_pred cccccEEEeeCcccccCCh-----------hHHHHHHHHHHhCCceecCC-c-HHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022296 51 GQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTG-D-WAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (299)
Q Consensus 51 g~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~G-t-lfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (299)
..-+|.+.+...+|-.+.+ +.+++-++++|++|..|+.+ . +++. ..-.++.+.++++.+.+.|.+.
T Consensus 89 ~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~-~~~~~~~~~~~~~~~~~~g~~~ 167 (273)
T cd07941 89 EAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDG-YKANPEYALATLKAAAEAGADW 167 (273)
T ss_pred hCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEecccc-CCCCHHHHHHHHHHHHhCCCCE
Confidence 3356777777666544322 24688999999999988775 2 3231 1223456777888889999999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhh
Q 022296 118 IELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINK 197 (299)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (299)
|-|.|-.-.+.+++-.++++.++++ +. -..+++.+. . | ....
T Consensus 168 i~l~DT~G~~~P~~v~~lv~~l~~~-~~-~~~l~~H~H-n------d--------------------------~Gla--- 209 (273)
T cd07941 168 LVLCDTNGGTLPHEIAEIVKEVRER-LP-GVPLGIHAH-N------D--------------------------SGLA--- 209 (273)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHh-CC-CCeeEEEec-C------C--------------------------CCcH---
Confidence 9999999999999999999999984 11 012444221 1 1 2233
Q ss_pred HHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHh
Q 022296 198 SRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 236 (299)
Q Consensus 198 i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~ 236 (299)
...+-..++|||++ +++. |+=+..||...+.+-..+.
T Consensus 210 ~An~laA~~aGa~~--id~s~~GlGeraGn~~~e~~~~~L~ 248 (273)
T cd07941 210 VANSLAAVEAGATQ--VQGTINGYGERCGNANLCSIIPNLQ 248 (273)
T ss_pred HHHHHHHHHcCCCE--EEEeccccccccccccHHHHHHHHH
Confidence 56667889999996 6765 8989999988876665554
No 36
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=95.47 E-value=0.14 Score=50.96 Aligned_cols=127 Identities=11% Similarity=0.202 Sum_probs=87.0
Q ss_pred ccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc------
Q 022296 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE------ 126 (299)
Q Consensus 54 ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~------ 126 (299)
|.-+=||+||-.+++.+.|++.++.++++- .+.++. .|+.+.-+|+.+ ++.++.++++||+.|.|.--|.+
T Consensus 92 i~~i~~GGGTPs~l~~~~l~~Ll~~i~~~~-~~~~~~-~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~ 169 (430)
T PRK08208 92 FASFAVGGGTPTLLNAAELEKLFDSVERVL-GVDLGN-IPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHA 169 (430)
T ss_pred eeEEEEcCCccccCCHHHHHHHHHHHHHhC-CCCCCC-ceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHH
Confidence 667789999999999999999999998652 122211 244333344444 78999999999999999877662
Q ss_pred ----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHH
Q 022296 127 ----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAE 202 (299)
Q Consensus 127 ----i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 202 (299)
-+.++-.+.|+.+++.||.+.. +...++.. + .+.+.+ .+.++
T Consensus 170 l~R~~~~~~~~~ai~~l~~~g~~~i~-~dlI~GlP-----~-------------------------qt~e~~---~~~l~ 215 (430)
T PRK08208 170 LHRPQKRADVHQALEWIRAAGFPILN-IDLIYGIP-----G-------------------------QTHASW---MESLD 215 (430)
T ss_pred hCCCCCHHHHHHHHHHHHHcCCCeEE-EEeecCCC-----C-------------------------CCHHHH---HHHHH
Confidence 3556677899999999986421 12222211 1 125666 67777
Q ss_pred HHHHccCcEEEEec
Q 022296 203 RCLEAGADMIMIDS 216 (299)
Q Consensus 203 ~dLeAGA~~VIiEa 216 (299)
..++.|.+.|-+=.
T Consensus 216 ~~~~l~~~~is~y~ 229 (430)
T PRK08208 216 QALVYRPEELFLYP 229 (430)
T ss_pred HHHhCCCCEEEEcc
Confidence 78889998776544
No 37
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=95.42 E-value=0.29 Score=46.72 Aligned_cols=151 Identities=15% Similarity=0.209 Sum_probs=96.9
Q ss_pred EEeeCcccccCChhHHHHHHHHHHhCC--ceecCCcHHHHHHHhCCchHHHHHHHHHHcCC-CEEEecCCcc--------
Q 022296 57 LKFSGGSHSLMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGF-DTIELNVGSL-------- 125 (299)
Q Consensus 57 lKfg~GTs~l~p~~~l~eKI~l~~~~g--V~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF-~~IEISdGti-------- 125 (299)
+=||.||....|.+.|++.++.++++. +.++.+|=-+.+ +...-+.++.+++.|+ ..||+.-=|.
T Consensus 81 iyf~ggt~t~l~~~~L~~l~~~i~~~~~~~~isi~trpd~l----~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i 156 (302)
T TIGR01212 81 AYFQAYTNTYAPVEVLKEMYEQALSYDDVVGLSVGTRPDCV----PDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKI 156 (302)
T ss_pred EEEECCCcCCCCHHHHHHHHHHHhCCCCEEEEEEEecCCcC----CHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHH
Confidence 669999999999999999999998763 122222211111 1133456666667799 4688743333
Q ss_pred --cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHH
Q 022296 126 --EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAER 203 (299)
Q Consensus 126 --~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 203 (299)
..+.++..+.++.++++|+++...+=+ +.. ++ +.+.+ ++.++.
T Consensus 157 ~Rg~t~~~~~~ai~~l~~~gi~v~~~lI~--GlP-----ge-------------------------t~e~~---~~t~~~ 201 (302)
T TIGR01212 157 NRGHDFACYVDAVKRARKRGIKVCSHVIL--GLP-----GE-------------------------DREEM---METAKI 201 (302)
T ss_pred cCcChHHHHHHHHHHHHHcCCEEEEeEEE--CCC-----CC-------------------------CHHHH---HHHHHH
Confidence 235678889999999999987664433 210 11 14566 788888
Q ss_pred HHHccCcEEEE------ecccccc--CCCccc-------HHHHHHHHhccCCCceEEe
Q 022296 204 CLEAGADMIMI------DSDDVCK--HADSLR-------ADIIAKVIGRLGLEKTMFE 246 (299)
Q Consensus 204 dLeAGA~~VIi------Eargi~d--~~G~~r-------~d~i~~ii~~l~~eklifE 246 (299)
..+.+.+.|-+ ++-.+++ ..|.+. .+++..+++.++++.+|+-
T Consensus 202 l~~l~~d~i~i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~~l~~~~~i~R 259 (302)
T TIGR01212 202 VSLLDVDGIKIHPLHVVKGTKMAKMYEKGELKTLSLEEYISLACDFLEHLPPEVVIHR 259 (302)
T ss_pred HHhcCCCEEEEEEEEecCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCcCeEEEE
Confidence 88999997765 2222322 234443 3455677788998888776
No 38
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=95.38 E-value=0.21 Score=46.56 Aligned_cols=141 Identities=14% Similarity=0.172 Sum_probs=88.4
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcc----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVGSL----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti----~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
+.+.++++++.+.|.+.|=+. ||. .|+.++|.++++.+.+. +...+-+-
T Consensus 21 ~~~~~~i~~l~~~Gv~gl~v~-GstGE~~~lt~~Er~~l~~~~~~~---~~~~~~vi----------------------- 73 (284)
T cd00950 21 DALERLIEFQIENGTDGLVVC-GTTGESPTLSDEEHEAVIEAVVEA---VNGRVPVI----------------------- 73 (284)
T ss_pred HHHHHHHHHHHHcCCCEEEEC-CCCcchhhCCHHHHHHHHHHHHHH---hCCCCcEE-----------------------
Confidence 368889999999999999887 666 99999999999999984 11111110
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccc-------------------------cccCC---C-ccc
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDD-------------------------VCKHA---D-SLR 227 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEarg-------------------------i~d~~---G-~~r 227 (299)
++....+.++. +++++..-++||+.|++=.-. ||+.- | .+-
T Consensus 74 -------~gv~~~~~~~~---~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls 143 (284)
T cd00950 74 -------AGTGSNNTAEA---IELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIE 143 (284)
T ss_pred -------eccCCccHHHH---HHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCC
Confidence 00111225667 999999999999999997631 44431 2 345
Q ss_pred HHHHHHHHhccCCCceE-E-ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhcc
Q 022296 228 ADIIAKVIGRLGLEKTM-F-EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGR 282 (299)
Q Consensus 228 ~d~i~~ii~~l~~ekli-f-EA-P~k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~ 282 (299)
.+++.+|++ .+ +++ + ++ ++...-..+++++++++.++...++ .-+..++.|
T Consensus 144 ~~~~~~L~~-~p--~v~giK~s~~~~~~~~~~~~~~~~~~~v~~G~d~-~~~~~~~~G 197 (284)
T cd00950 144 PETVLRLAE-HP--NIVGIKEATGDLDRVSELIALCPDDFAVLSGDDA-LTLPFLALG 197 (284)
T ss_pred HHHHHHHhc-CC--CEEEEEECCCCHHHHHHHHHhCCCCeEEEeCChH-hHHHHHHCC
Confidence 666666663 22 221 1 22 3344444556666776666544433 344556544
No 39
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=95.38 E-value=0.41 Score=45.54 Aligned_cols=145 Identities=17% Similarity=0.157 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCcc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~ 178 (299)
.++++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. .+-+.+. +
T Consensus 29 ~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~-------~~~~~pv--------------i------- 80 (303)
T PRK03620 29 AYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVET-------TAGRVPV--------------I------- 80 (303)
T ss_pred HHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHH-------hCCCCcE--------------E-------
Confidence 68888999999999999775433 589999999999988873 2111000 0
Q ss_pred chhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccCCC-cccHHHHH
Q 022296 179 DKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKHAD-SLRADIIA 232 (299)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~~G-~~r~d~i~ 232 (299)
++... +..+. ++.++..-++||+.|++=.- -||+..| .+-.+++.
T Consensus 81 -----~gv~~-~t~~~---i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~ 151 (303)
T PRK03620 81 -----AGAGG-GTAQA---IEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLA 151 (303)
T ss_pred -----EecCC-CHHHH---HHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHH
Confidence 00011 14556 88889999999999998652 2677666 66788888
Q ss_pred HHHhccCCCceEE---ecCCchhHHHHHHHhCCCcccc--cCCCCchhhhhhhcccCC
Q 022296 233 KVIGRLGLEKTMF---EATNPRTSEWFIRRYGPKVNLF--VDHSQVMDLECLRGRNLG 285 (299)
Q Consensus 233 ~ii~~l~~eklif---EAP~k~qQ~~fI~~fG~~VNLg--I~~~eVi~LE~LR~~~~G 285 (299)
++.++.+ +|+. ..++..+...++++++++..+. -+.+|.+.+.++..|.-|
T Consensus 152 ~L~~~~p--ni~giK~s~~d~~~~~~~~~~~~~~f~vl~G~d~~e~~~~~~~~~G~~G 207 (303)
T PRK03620 152 RLAERCP--NLVGFKDGVGDIELMQRIVRALGDRLLYLGGLPTAEVFAAAYLALGVPT 207 (303)
T ss_pred HHHhhCC--CEEEEEeCCCCHHHHHHHHHHcCCCeEEEeCCCcchhhHHHHHhCCCCE
Confidence 8875554 4443 3466777778888888876654 433567777777755544
No 40
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=95.36 E-value=0.12 Score=51.87 Aligned_cols=127 Identities=18% Similarity=0.319 Sum_probs=88.2
Q ss_pred cccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 022296 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 126 (299)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~----- 126 (299)
-|+.+=||+||..+++.+.|.+.++.++++ ..+.++ .|+.+.-+|+. -++.++.+++.|++.|.|+--+.+
T Consensus 102 ~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~-~~~~~~--~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~ 178 (453)
T PRK09249 102 PVSQLHWGGGTPTFLSPEQLRRLMALLREH-FNFAPD--AEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQK 178 (453)
T ss_pred ceEEEEECCcccccCCHHHHHHHHHHHHHh-CCCCCC--CEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHH
Confidence 488999999999999999999999999886 111222 12233233333 368999999999999999876663
Q ss_pred -----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHH
Q 022296 127 -----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRA 201 (299)
Q Consensus 127 -----i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 201 (299)
-+.++-.+.|+.+++.||... -+...++.. + .+.+.+ .+.+
T Consensus 179 ~l~r~~~~~~~~~ai~~l~~~G~~~v-~~dli~GlP-----g-------------------------qt~e~~---~~~l 224 (453)
T PRK09249 179 AVNRIQPFEFTFALVEAARELGFTSI-NIDLIYGLP-----K-------------------------QTPESF---ARTL 224 (453)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCCcE-EEEEEccCC-----C-------------------------CCHHHH---HHHH
Confidence 566777889999999998421 122222211 1 125566 6777
Q ss_pred HHHHHccCcEEEEec
Q 022296 202 ERCLEAGADMIMIDS 216 (299)
Q Consensus 202 ~~dLeAGA~~VIiEa 216 (299)
+..++.|++.|-+-.
T Consensus 225 ~~~~~l~~~~i~~y~ 239 (453)
T PRK09249 225 EKVLELRPDRLAVFN 239 (453)
T ss_pred HHHHhcCCCEEEEcc
Confidence 888889999886654
No 41
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=95.34 E-value=0.3 Score=45.86 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti----~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~ 177 (299)
.++++++++.+.|.+.|=+. ||. .|+.++|.++++.+.+. +...+.+- +|
T Consensus 23 ~l~~~i~~l~~~Gv~gi~~~-Gs~GE~~~ls~~Er~~~~~~~~~~---~~~~~~vi-----~g----------------- 76 (292)
T PRK03170 23 ALRKLVDYLIANGTDGLVVV-GTTGESPTLTHEEHEELIRAVVEA---VNGRVPVI-----AG----------------- 76 (292)
T ss_pred HHHHHHHHHHHcCCCEEEEC-CcCCccccCCHHHHHHHHHHHHHH---hCCCCcEE-----ee-----------------
Confidence 68889999999999999884 665 89999999999999883 11111110 00
Q ss_pred cchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEec
Q 022296 178 TDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDS 216 (299)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEa 216 (299)
+...+.++. +++++..-++||+.|++=.
T Consensus 77 --------v~~~~~~~~---i~~a~~a~~~G~d~v~~~p 104 (292)
T PRK03170 77 --------TGSNSTAEA---IELTKFAEKAGADGALVVT 104 (292)
T ss_pred --------cCCchHHHH---HHHHHHHHHcCCCEEEECC
Confidence 011225667 8999999999999999965
No 42
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=95.28 E-value=0.25 Score=46.45 Aligned_cols=151 Identities=15% Similarity=0.147 Sum_probs=105.3
Q ss_pred hhHHHHHHHhhcccccEEEeeCcccccC-----------ChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHH
Q 022296 40 HNVLEDIFESMGQFVDGLKFSGGSHSLM-----------PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVE 108 (299)
Q Consensus 40 ~~~l~DlLe~ag~yID~lKfg~GTs~l~-----------p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~ 108 (299)
...++-.+++ =+|.+-+...+|-.+ .-+.+++-++.++++|+.|+.+- |.+..-.++.+.++++
T Consensus 74 ~~di~~a~~~---g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~--eda~r~~~~~l~~~~~ 148 (262)
T cd07948 74 MDDARIAVET---GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS--EDSFRSDLVDLLRVYR 148 (262)
T ss_pred HHHHHHHHHc---CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE--EeeCCCCHHHHHHHHH
Confidence 3455555554 456666665544221 12235566799999999877642 3344444567889999
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCc
Q 022296 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPE 188 (299)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 188 (299)
.+.++|.+.|-+.|-+--+.+++-.++++.+++. +. ..++..+.. |
T Consensus 149 ~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~-~~--~~i~~H~Hn-------~------------------------ 194 (262)
T cd07948 149 AVDKLGVNRVGIADTVGIATPRQVYELVRTLRGV-VS--CDIEFHGHN-------D------------------------ 194 (262)
T ss_pred HHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHh-cC--CeEEEEECC-------C------------------------
Confidence 9999999999999999999999999999999884 22 345553221 1
Q ss_pred cchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHh
Q 022296 189 IEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 236 (299)
Q Consensus 189 ~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~ 236 (299)
...- +..+...++|||++ +++. |+=+..||.-.+.+-..+.
T Consensus 195 --~Gla---~an~~~a~~aG~~~--vd~s~~GlGeraGn~~~e~~~~~l~ 237 (262)
T cd07948 195 --TGCA---IANAYAALEAGATH--IDTTVLGIGERNGITPLGGLIARMY 237 (262)
T ss_pred --CChH---HHHHHHHHHhCCCE--EEEeccccccccCCccHHHHHHHHH
Confidence 2223 55667899999995 7776 9999999998877766664
No 43
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=95.09 E-value=0.27 Score=46.65 Aligned_cols=150 Identities=14% Similarity=0.131 Sum_probs=103.7
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhH-----------HHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHH
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPF-----------IEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVE 108 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~-----------l~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~~~~~yl~ 108 (299)
.++..+++- +|.+.+...+|-.+.+.. +++-++.++++|..|..+ +|.- .+.-.|+.+.++.+
T Consensus 79 ~~~~A~~~g---~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~-~~r~~~~~~~~~~~ 154 (280)
T cd07945 79 SVDWIKSAG---AKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSN-GMRDSPDYVFQLVD 154 (280)
T ss_pred HHHHHHHCC---CCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCC-CCcCCHHHHHHHHH
Confidence 344444443 456667666654443322 566689999999987764 4321 11445668899999
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCc
Q 022296 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPE 188 (299)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 188 (299)
.+.++|.+.|-+.|-.--+.+.+-.++++.+++. + ....++..+.. |
T Consensus 155 ~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~-~-~~~~i~~H~Hn-------d------------------------ 201 (280)
T cd07945 155 FLSDLPIKRIMLPDTLGILSPFETYTYISDMVKR-Y-PNLHFDFHAHN-------D------------------------ 201 (280)
T ss_pred HHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhh-C-CCCeEEEEeCC-------C------------------------
Confidence 9999999999999999999999999999999873 1 11234543211 1
Q ss_pred cchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHH
Q 022296 189 IEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVI 235 (299)
Q Consensus 189 ~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii 235 (299)
.... +..+...++|||++ +++- |+=+..||...+.+-..+
T Consensus 202 --~Gla---~AN~laA~~aGa~~--vd~s~~GlGe~aGN~~~E~~v~~L 243 (280)
T cd07945 202 --YDLA---VANVLAAVKAGIKG--LHTTVNGLGERAGNAPLASVIAVL 243 (280)
T ss_pred --CCHH---HHHHHHHHHhCCCE--EEEecccccccccCccHHHHHHHH
Confidence 2333 66668899999995 6665 888999998887776655
No 44
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.57 Score=46.14 Aligned_cols=145 Identities=17% Similarity=0.159 Sum_probs=93.7
Q ss_pred HHHHHHHhhcccccEEEeeCc-----ccc-cCChhHHHHHHHHHHhCCceecC-C-cHHHHHHHhCCchHHHHHHHHHHc
Q 022296 42 VLEDIFESMGQFVDGLKFSGG-----SHS-LMPKPFIEEVVKRAHQHDVYVST-G-DWAEHLIRNGPSAFKEYVEDCKQV 113 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~G-----Ts~-l~p~~~l~eKI~l~~~~gV~v~~-G-tlfE~a~~qg~~~~~~yl~~~k~l 113 (299)
.++++-.......|-+=+|.- ..+ -++.+.|++-|+++|+||+++|- . +++--.-. ..+.+|++.+.++
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~---~~~~~~l~~l~e~ 91 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDEL---ETLERYLDRLVEL 91 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchh---hHHHHHHHHHHHc
Confidence 455555554444787777743 122 24556699999999999996663 4 54322111 1478999999999
Q ss_pred CCCEEEecCCcccCChhHHHHHHHHHHHcC--CcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccch
Q 022296 114 GFDTIELNVGSLEIPEETLLRYVRLVKSAG--LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEV 191 (299)
Q Consensus 114 GF~~IEISdGti~i~~~~r~~lI~~~~~~G--~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (299)
|.|+|+++| .-+|..+++.| +. +.+....+ ...
T Consensus 92 GvDaviv~D----------pg~i~l~~e~~p~l~----ih~S~q~~----------------------------v~N--- 126 (347)
T COG0826 92 GVDAVIVAD----------PGLIMLARERGPDLP----IHVSTQAN----------------------------VTN--- 126 (347)
T ss_pred CCCEEEEcC----------HHHHHHHHHhCCCCc----EEEeeeEe----------------------------cCC---
Confidence 999999999 57899999876 33 33310000 000
Q ss_pred hhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccC---CCceEEecC
Q 022296 192 GVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG---LEKTMFEAT 248 (299)
Q Consensus 192 ~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~---~eklifEAP 248 (299)
-++++-.-+.|| ..+|=+| +++.+.|.+|.++++ +|-+.+.|-
T Consensus 127 ------~~~~~f~~~~G~-~rvVl~r-------Els~~ei~~i~~~~~~veiEvfVhGal 172 (347)
T COG0826 127 ------AETAKFWKELGA-KRVVLPR-------ELSLEEIKEIKEQTPDVEIEVFVHGAL 172 (347)
T ss_pred ------HHHHHHHHHcCC-EEEEeCc-------cCCHHHHHHHHHhCCCceEEEEEecch
Confidence 345577888894 4555566 556777888887764 556666653
No 45
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=94.91 E-value=0.57 Score=44.23 Aligned_cols=142 Identities=18% Similarity=0.170 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCcccccccccccCCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G-~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~ 175 (299)
.++++++++-+.|.+.|=+.-.| ..|+.++|.++++.+.+. | +.|+ +|+
T Consensus 22 ~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi--~gv----------------------- 76 (289)
T cd00951 22 AYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVL--AGA----------------------- 76 (289)
T ss_pred HHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEE--Eec-----------------------
Confidence 67888999999999999775443 589999999999998883 0 1111 111
Q ss_pred CccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccCCC-cccHH
Q 022296 176 RSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKHAD-SLRAD 229 (299)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~~G-~~r~d 229 (299)
.. +..+. ++.+++.-++||+.|++=.- -||+..| .+..+
T Consensus 77 -----------~~-~t~~~---i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~ 141 (289)
T cd00951 77 -----------GY-GTATA---IAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLTAD 141 (289)
T ss_pred -----------CC-CHHHH---HHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHH
Confidence 00 14555 88889999999999998541 2677666 57788
Q ss_pred HHHHHHhccCCCceEE--e-cCCchhHHHHHHHhCCCcccccCC--CCchhhhhhhcccCC
Q 022296 230 IIAKVIGRLGLEKTMF--E-ATNPRTSEWFIRRYGPKVNLFVDH--SQVMDLECLRGRNLG 285 (299)
Q Consensus 230 ~i~~ii~~l~~eklif--E-AP~k~qQ~~fI~~fG~~VNLgI~~--~eVi~LE~LR~~~~G 285 (299)
++.++.++.+ +|+. + ..+-.+...+++.++.+..++.-+ .|.+.++++..|--|
T Consensus 142 ~l~~L~~~~p--nivgiKds~~d~~~~~~~~~~~~~~~~v~~G~~~~d~~~~~~l~~Ga~G 200 (289)
T cd00951 142 SLARLAERCP--NLVGFKDGVGDIELMRRIVAKLGDRLLYLGGLPTAEVFALAYLAMGVPT 200 (289)
T ss_pred HHHHHHhcCC--CEEEEEeCCCCHHHHHHHHHhcCCCeEEEeCCCcchHhHHHHHHCCCCE
Confidence 8888875344 3332 3 345566667777777766554333 577788888876544
No 46
>PRK01060 endonuclease IV; Provisional
Probab=94.90 E-value=0.5 Score=43.37 Aligned_cols=148 Identities=14% Similarity=0.183 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cc---cCChhHHHHHHHHHHHcCCcccceeeeecCCC-CCCCcccccccccccCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVG---SL---EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKS-DIPSDRDRAFGAYVARA 174 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti---~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~s-evg~~~d~~~~~~~~~~ 174 (299)
.+++.++.++++||++||+.-+ +. .++++...++-+.+++.|+++.+ +.+..+.. ... +|.
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~-~~~h~~~~~nl~-----------~~d 80 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPED-ILVHAPYLINLG-----------NPN 80 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCc-eEEecceEecCC-----------CCC
Confidence 3788899999999999999754 22 45666777777788888988421 11211100 000 011
Q ss_pred CCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCc--cc---HHHHHHHHhccCCCceEEecC-
Q 022296 175 PRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADS--LR---ADIIAKVIGRLGLEKTMFEAT- 248 (299)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~--~r---~d~i~~ii~~l~~eklifEAP- 248 (299)
+-.. +.+++.+ .+.++..-+.||..|++-.-..+...-. .. .+.+.++++.-.-=+|.+|.-
T Consensus 81 ~~~r---------~~s~~~~---~~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~~~~~gv~l~iEn~~ 148 (281)
T PRK01060 81 KEIL---------EKSRDFL---IQEIERCAALGAKLLVFHPGSHLGDIDEEDCLARIAESLNEALDKTQGVTIVLENTA 148 (281)
T ss_pred HHHH---------HHHHHHH---HHHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 0000 1124455 4445555577999999865432211100 00 113333332212235788862
Q ss_pred --------CchhHHHHHHHhCCC--cccccCCCCc
Q 022296 249 --------NPRTSEWFIRRYGPK--VNLFVDHSQV 273 (299)
Q Consensus 249 --------~k~qQ~~fI~~fG~~--VNLgI~~~eV 273 (299)
...+-..+++.++.. |.+.+|..++
T Consensus 149 ~~~~~~~~~~~~~~~l~~~v~~~~~vg~~lD~gH~ 183 (281)
T PRK01060 149 GQGSELGRRFEELARIIDGVEDKSRVGVCLDTCHA 183 (281)
T ss_pred CCCCcccCCHHHHHHHHHhcCCcccEEEEEeHHhH
Confidence 234556788888753 4444655544
No 47
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=94.90 E-value=0.48 Score=44.58 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=52.3
Q ss_pred HHHHHHHhhcccccEEEeeCcc--------cccCChhHHHHHHHHHHhC-CceecC--CcHHHHHHHhCCchHHHHHHHH
Q 022296 42 VLEDIFESMGQFVDGLKFSGGS--------HSLMPKPFIEEVVKRAHQH-DVYVST--GDWAEHLIRNGPSAFKEYVEDC 110 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GT--------s~l~p~~~l~eKI~l~~~~-gV~v~~--GtlfE~a~~qg~~~~~~yl~~~ 110 (299)
..-+.++.++.|.|++=+-.|| +....++.+.+.++-.++. ++++.- .. +.+...++.+.+
T Consensus 107 ~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~--------~~~~~~~~a~~l 178 (300)
T TIGR01037 107 EVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSP--------NVTDITEIAKAA 178 (300)
T ss_pred HHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCC--------ChhhHHHHHHHH
Confidence 3344445455678888876664 4556778899999988875 665553 21 112466788889
Q ss_pred HHcCCCEEEecCCcc
Q 022296 111 KQVGFDTIELNVGSL 125 (299)
Q Consensus 111 k~lGF~~IEISdGti 125 (299)
.+.|.|.|.|++++-
T Consensus 179 ~~~G~d~i~v~nt~~ 193 (300)
T TIGR01037 179 EEAGADGLTLINTLR 193 (300)
T ss_pred HHcCCCEEEEEccCC
Confidence 999999999997653
No 48
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=94.89 E-value=0.55 Score=46.05 Aligned_cols=141 Identities=16% Similarity=0.219 Sum_probs=102.3
Q ss_pred ccEEEeeCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 022296 54 VDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (299)
Q Consensus 54 ID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISd 122 (299)
+|.+-+...+|-++.+ +.+.+-++.++++|..|..+ +|.+....++.+.++++.+.++|.+.|-+.|
T Consensus 85 ~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~--~eda~r~~~~~l~~~~~~~~~~g~~~i~l~D 162 (363)
T TIGR02090 85 VDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFS--AEDATRTDIDFLIKVFKRAEEAGADRINIAD 162 (363)
T ss_pred cCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEE--EeecCCCCHHHHHHHHHHHHhCCCCEEEEeC
Confidence 7778777777655321 35668888999999977654 2444455566788888889999999999999
Q ss_pred CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHH
Q 022296 123 GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAE 202 (299)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 202 (299)
-.-.+.+++-.++|+.+++. +.+ .++..+. .+ .... +..+.
T Consensus 163 T~G~~~P~~v~~li~~l~~~-~~~--~l~~H~H-nd--------------------------------~GlA---~AN~l 203 (363)
T TIGR02090 163 TVGVLTPQKMEELIKKLKEN-VKL--PISVHCH-ND--------------------------------FGLA---TANSI 203 (363)
T ss_pred CCCccCHHHHHHHHHHHhcc-cCc--eEEEEec-CC--------------------------------CChH---HHHHH
Confidence 99999999999999999874 111 2444321 11 2233 55667
Q ss_pred HHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhc
Q 022296 203 RCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGR 237 (299)
Q Consensus 203 ~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~ 237 (299)
..++|||++ |++- |+=+..||...+.+-..+..
T Consensus 204 aA~~aGa~~--vd~s~~GlGeraGN~~lE~vv~~L~~ 238 (363)
T TIGR02090 204 AGVKAGAEQ--VHVTVNGIGERAGNAALEEVVMALKY 238 (363)
T ss_pred HHHHCCCCE--EEEEeeccccccccccHHHHHHHHHH
Confidence 889999986 5664 88899999998877666543
No 49
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=94.78 E-value=0.52 Score=43.77 Aligned_cols=123 Identities=16% Similarity=0.212 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc-----------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGS-----------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 170 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt-----------i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~ 170 (299)
.+.+.++.+.+.|+..|-|-|+. --+|.+++.+.|+.+++.-=.. ++|-+- ..+ |. +
T Consensus 85 ~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~-~~~~Ii---ART----Da-~--- 152 (243)
T cd00377 85 NVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDL-PDFVII---ART----DA-L--- 152 (243)
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhcc-CCeEEE---EEc----Cc-h---
Confidence 44555777777999999996655 4679999999999988841111 455551 111 10 0
Q ss_pred ccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecCCc
Q 022296 171 VARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 250 (299)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP~k 250 (299)
+ .+. -.+++. |+++++..+||||.|++++-- ..+.+.++.+.++.--++.-.|..
T Consensus 153 -----~-------~~~--~~~~ea---i~Ra~ay~~AGAD~v~v~~~~--------~~~~~~~~~~~~~~Pl~~~~~~~~ 207 (243)
T cd00377 153 -----L-------AGE--EGLDEA---IERAKAYAEAGADGIFVEGLK--------DPEEIRAFAEAPDVPLNVNMTPGG 207 (243)
T ss_pred -----h-------ccC--CCHHHH---HHHHHHHHHcCCCEEEeCCCC--------CHHHHHHHHhcCCCCEEEEecCCC
Confidence 0 000 125677 999999999999999999752 458888898887765555556654
Q ss_pred h-hHHHHHHHhC
Q 022296 251 R-TSEWFIRRYG 261 (299)
Q Consensus 251 ~-qQ~~fI~~fG 261 (299)
+ ....=+.+.|
T Consensus 208 ~~~~~~~l~~lG 219 (243)
T cd00377 208 NLLTVAELAELG 219 (243)
T ss_pred CCCCHHHHHHCC
Confidence 3 2333344444
No 50
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=94.78 E-value=0.32 Score=46.66 Aligned_cols=112 Identities=18% Similarity=0.303 Sum_probs=74.5
Q ss_pred CChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 022296 67 MPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (299)
Q Consensus 67 ~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (299)
++.+.|++-|+.++++-=.++ | .++ +... .+++.++.+.+.|.+.|.++-|. |. ++|+++++.|.+
T Consensus 45 ~~~~~l~~~i~~~~~~t~~pf-gvn~~---~~~~--~~~~~~~~~~~~~v~~v~~~~g~---p~----~~i~~lk~~g~~ 111 (307)
T TIGR03151 45 APPDVVRKEIRKVKELTDKPF-GVNIM---LLSP--FVDELVDLVIEEKVPVVTTGAGN---PG----KYIPRLKENGVK 111 (307)
T ss_pred CCHHHHHHHHHHHHHhcCCCc-EEeee---cCCC--CHHHHHHHHHhCCCCEEEEcCCC---cH----HHHHHHHHcCCE
Confidence 467789999999987521111 2 221 1123 56888999999999999998663 32 589999998876
Q ss_pred ccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc---ccccC
Q 022296 146 AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD---DVCKH 222 (299)
Q Consensus 146 v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar---gi~d~ 222 (299)
|.+.++- ++.+++..++|||.|+++++ |-.
T Consensus 112 v~~~v~s---------------------------------------------~~~a~~a~~~GaD~Ivv~g~eagGh~-- 144 (307)
T TIGR03151 112 VIPVVAS---------------------------------------------VALAKRMEKAGADAVIAEGMESGGHI-- 144 (307)
T ss_pred EEEEcCC---------------------------------------------HHHHHHHHHcCCCEEEEECcccCCCC--
Confidence 6542211 44457888999999999887 322
Q ss_pred CCcc-cHHHHHHHHhccC
Q 022296 223 ADSL-RADIIAKVIGRLG 239 (299)
Q Consensus 223 ~G~~-r~d~i~~ii~~l~ 239 (299)
|.. ..+++.++.+.++
T Consensus 145 -g~~~~~~ll~~v~~~~~ 161 (307)
T TIGR03151 145 -GELTTMALVPQVVDAVS 161 (307)
T ss_pred -CCCcHHHHHHHHHHHhC
Confidence 222 3566777766554
No 51
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=94.71 E-value=0.38 Score=48.86 Aligned_cols=164 Identities=15% Similarity=0.184 Sum_probs=110.7
Q ss_pred CCCCCCcchhHHHHHHHhh-cccccEEEeeCcccccCChhHHHHHHHHHHhCCceec--CC-cHHHHHHHhCCchHHHHH
Q 022296 32 PHYTLSSSHNVLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--TG-DWAEHLIRNGPSAFKEYV 107 (299)
Q Consensus 32 kGl~~~~g~~~l~DlLe~a-g~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~--~G-tlfE~a~~qg~~~~~~yl 107 (299)
+||.-. .-+..++.++.| ..-||.+-+....+-+ +++++-|+.++++|..+. .. ++-. ...++.+.++.
T Consensus 88 ~G~~~~-pddvv~~~v~~A~~~Gvd~irif~~lnd~---~n~~~~v~~ak~~G~~v~~~i~~t~~p---~~~~~~~~~~a 160 (448)
T PRK12331 88 LGYRNY-ADDVVESFVQKSVENGIDIIRIFDALNDV---RNLETAVKATKKAGGHAQVAISYTTSP---VHTIDYFVKLA 160 (448)
T ss_pred cccccC-chhhHHHHHHHHHHCCCCEEEEEEecCcH---HHHHHHHHHHHHcCCeEEEEEEeecCC---CCCHHHHHHHH
Confidence 455332 223445555554 4459999998866655 369999999999996532 12 1111 13334677788
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCC
Q 022296 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNP 187 (299)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~ 187 (299)
+.+.+.|.+.|=|.|-.--+.+.+-.++|+.+++. +. ..+++.+. .+
T Consensus 161 ~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~-~~--~pi~~H~H-nt----------------------------- 207 (448)
T PRK12331 161 KEMQEMGADSICIKDMAGILTPYVAYELVKRIKEA-VT--VPLEVHTH-AT----------------------------- 207 (448)
T ss_pred HHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHh-cC--CeEEEEec-CC-----------------------------
Confidence 88899999999999999999999999999999984 22 12444211 11
Q ss_pred ccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCC
Q 022296 188 EIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 241 (299)
Q Consensus 188 ~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~e 241 (299)
.... +..+-..++|||+.|=.=-.|+-...||.-++.+-..++..|.+
T Consensus 208 ---~GlA---~AN~laAieaGad~vD~sv~glg~gaGN~~tE~lv~~L~~~g~~ 255 (448)
T PRK12331 208 ---SGIA---EMTYLKAIEAGADIIDTAISPFAGGTSQPATESMVAALQDLGYD 255 (448)
T ss_pred ---CCcH---HHHHHHHHHcCCCEEEeeccccCCCcCCHhHHHHHHHHHhcCCC
Confidence 1223 55667889999996433334888889999988777777665543
No 52
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=94.70 E-value=0.76 Score=41.94 Aligned_cols=146 Identities=12% Similarity=0.174 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL-----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-----~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
.+++-++.++++||++||+..+.. +++.++..++-+.+++.|+++.+ ++.-...- +.. +..+.+-
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s-~~~~~~~~--~~~-------~~~~~~~ 83 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIG-YTPETNGY--PYN-------MMLGDEH 83 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEE-ecCcccCc--Ccc-------ccCCCHH
Confidence 689999999999999999965421 34455677788888899998754 22100000 000 0000000
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCccc------HHHHHHHHhccCCCceEEec-
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLR------ADIIAKVIGRLGLEKTMFEA- 247 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r------~d~i~~ii~~l~~eklifEA- 247 (299)
.. +..++.+ .+.++.+-..||..|++-+- +........+ -..+.+++++.|+ +|.+|.
T Consensus 84 ~r---------~~~~~~~---~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l~iE~~ 150 (275)
T PRK09856 84 MR---------RESLDMI---KLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGM-DLILEPL 150 (275)
T ss_pred HH---------HHHHHHH---HHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-EEEEecC
Confidence 00 0113445 55667777889999988652 1111111111 1233444455565 577885
Q ss_pred -C-------CchhHHHHHHHhC-CCcccccCC
Q 022296 248 -T-------NPRTSEWFIRRYG-PKVNLFVDH 270 (299)
Q Consensus 248 -P-------~k~qQ~~fI~~fG-~~VNLgI~~ 270 (299)
| .+..-..+++..+ |+|-+.+|.
T Consensus 151 ~~~~~~~~~t~~~~~~l~~~~~~~~v~~~~D~ 182 (275)
T PRK09856 151 TPYESNVVCNANDVLHALALVPSPRLFSMVDI 182 (275)
T ss_pred CCCcccccCCHHHHHHHHHHcCCCcceeEEee
Confidence 2 3567888999998 566443433
No 53
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=94.57 E-value=0.41 Score=46.39 Aligned_cols=124 Identities=14% Similarity=0.232 Sum_probs=83.6
Q ss_pred cccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 022296 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 126 (299)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~----- 126 (299)
.++.+=||+||..+.+.+.+++..+..+++++. ++ .|..+.-+|+. -++.++.++++|++.|.|+--|.+
T Consensus 51 ~~~~i~~gGGtps~l~~~~l~~L~~~i~~~~~~--~~--~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~ 126 (374)
T PRK05799 51 KIKSIFIGGGTPTYLSLEALEILKETIKKLNKK--ED--LEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLK 126 (374)
T ss_pred ceeEEEECCCcccCCCHHHHHHHHHHHHhCCCC--CC--CEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHH
Confidence 378899999999999999999888888765542 22 13333233333 468999999999999988765552
Q ss_pred -----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHH
Q 022296 127 -----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRA 201 (299)
Q Consensus 127 -----i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 201 (299)
-+.++-.+.|+.+++.||.... +...++. + + .+.+.+ .+.+
T Consensus 127 ~l~R~~~~~~~~~ai~~l~~~g~~~v~-~dli~Gl----P-g-------------------------qt~e~~---~~~l 172 (374)
T PRK05799 127 YLGRIHTFEEFLENYKLARKLGFNNIN-VDLMFGL----P-N-------------------------QTLEDW---KETL 172 (374)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCCcEE-EEeecCC----C-C-------------------------CCHHHH---HHHH
Confidence 3456677889999999885111 2222221 0 1 125666 7777
Q ss_pred HHHHHccCcEEEE
Q 022296 202 ERCLEAGADMIMI 214 (299)
Q Consensus 202 ~~dLeAGA~~VIi 214 (299)
+..++.|.+.|-+
T Consensus 173 ~~~~~l~~~~is~ 185 (374)
T PRK05799 173 EKVVELNPEHISC 185 (374)
T ss_pred HHHHhcCCCEEEE
Confidence 8888899888744
No 54
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=94.53 E-value=1.3 Score=41.54 Aligned_cols=144 Identities=14% Similarity=0.158 Sum_probs=97.4
Q ss_pred HHHHHHHhhcccccEEEeeCcccc---------cCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHH
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHS---------LMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQ 112 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~---------l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~ 112 (299)
.+-..|+.+| ||++=+||.++. ..+.+.+++...+.+ .+.++.. | ........+.++.+.+
T Consensus 24 ~ia~~L~~~G--Vd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~--~-----~~~~~~~~~~l~~a~~ 93 (266)
T cd07944 24 AIYRALAAAG--IDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAV--M-----VDYGNDDIDLLEPASG 93 (266)
T ss_pred HHHHHHHHCC--CCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEE--E-----ECCCCCCHHHHHHHhc
Confidence 4455677887 999999986553 234666777776653 1232221 0 1110023567888999
Q ss_pred cCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchh
Q 022296 113 VGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVG 192 (299)
Q Consensus 113 lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (299)
.|++.|-|+...-. -+.-.+.|+.+++.|++|. ++..+... .+++
T Consensus 94 ~gv~~iri~~~~~~--~~~~~~~i~~ak~~G~~v~--~~~~~a~~-------------------------------~~~~ 138 (266)
T cd07944 94 SVVDMIRVAFHKHE--FDEALPLIKAIKEKGYEVF--FNLMAISG-------------------------------YSDE 138 (266)
T ss_pred CCcCEEEEeccccc--HHHHHHHHHHHHHCCCeEE--EEEEeecC-------------------------------CCHH
Confidence 99999999875554 3445679999999998643 55532110 1256
Q ss_pred hhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 193 VGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 193 ~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
.+ ++.++...++||+.|. |.|..|...+..+.+++..+
T Consensus 139 ~~---~~~~~~~~~~g~~~i~-----l~DT~G~~~P~~v~~lv~~l 176 (266)
T cd07944 139 EL---LELLELVNEIKPDVFY-----IVDSFGSMYPEDIKRIISLL 176 (266)
T ss_pred HH---HHHHHHHHhCCCCEEE-----EecCCCCCCHHHHHHHHHHH
Confidence 77 8888888999999874 78899999999999888744
No 55
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=94.50 E-value=0.72 Score=43.65 Aligned_cols=144 Identities=15% Similarity=0.101 Sum_probs=96.8
Q ss_pred chHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCc
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~ 177 (299)
+.+.+.++++.+.|++.|=+.-. +..|+.++|.++++.+.+. ..-+.+ .+
T Consensus 26 ~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~-------~~g~~p--------------vi------ 78 (296)
T TIGR03249 26 AAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVST-------AKGKVP--------------VY------ 78 (296)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHH-------hCCCCc--------------EE------
Confidence 36888999999999999987433 2689999999999998883 111100 00
Q ss_pred cchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccCCC-cccHHHH
Q 022296 178 TDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKHAD-SLRADII 231 (299)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~~G-~~r~d~i 231 (299)
+++.. +.++. ++.++..-++|||.|++=.- =||+..| ++-.+++
T Consensus 79 ------~gv~~-~t~~a---i~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~ 148 (296)
T TIGR03249 79 ------TGVGG-NTSDA---IEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTL 148 (296)
T ss_pred ------EecCc-cHHHH---HHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH
Confidence 00000 14455 88999999999999998552 1677656 6778888
Q ss_pred HHHHhccCCCceEE---ecCCchhHHHHHHHhCCCcccccC--CCCchhhhhhhccc
Q 022296 232 AKVIGRLGLEKTMF---EATNPRTSEWFIRRYGPKVNLFVD--HSQVMDLECLRGRN 283 (299)
Q Consensus 232 ~~ii~~l~~eklif---EAP~k~qQ~~fI~~fG~~VNLgI~--~~eVi~LE~LR~~~ 283 (299)
.+++++.+ +|+. .+++..+...++++++++..+..- ..|.+.++++..|-
T Consensus 149 ~~La~~~~--nvvgiKds~~d~~~~~~~~~~~~~~~~v~~G~~~~d~~~~~~~~~Ga 203 (296)
T TIGR03249 149 ERLADRCP--NLVGFKDGIGDMEQMIEITQRLGDRLGYLGGMPTAEVTAPAYLPLGV 203 (296)
T ss_pred HHHHhhCC--CEEEEEeCCCCHHHHHHHHHHcCCCeEEEeCCCcchhhHHHHHhCCC
Confidence 88876555 3332 346677777788888876655423 25777777776554
No 56
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=94.48 E-value=0.84 Score=43.11 Aligned_cols=155 Identities=19% Similarity=0.177 Sum_probs=105.3
Q ss_pred hhHHHHHHHhhcccccEEEeeCcccccCCh-----------hHHHHHHHHHHhCCceec------CCcHHHHHHHhCCch
Q 022296 40 HNVLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSA 102 (299)
Q Consensus 40 ~~~l~DlLe~ag~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~------~GtlfE~a~~qg~~~ 102 (299)
.+.++..+++- +|.+-+...+|-.+.+ +.+.+.++.++++|..+. .|..++--. .++.
T Consensus 76 ~~dv~~A~~~g---~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~--~~~~ 150 (274)
T cd07938 76 LRGAERALAAG---VDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEV--PPER 150 (274)
T ss_pred HHHHHHHHHcC---cCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCC--CHHH
Confidence 33555556543 6777777766643222 456677999999999873 232222111 3346
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhc
Q 022296 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLF 182 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~ 182 (299)
+.++.+.+.++|.+.|-+.|-.-.+.+.+-.++|+.+++. +. ..++++.+. . |
T Consensus 151 ~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~-~~~i~~H~H-n------d------------------ 203 (274)
T cd07938 151 VAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLER-FP-DEKLALHFH-D------T------------------ 203 (274)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHH-CC-CCeEEEEEC-C------C------------------
Confidence 7788889999999999999999999999999999999985 21 123555321 1 1
Q ss_pred ccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc--ccc------cCCCcccHHHHHHHHhccC
Q 022296 183 LASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD--DVC------KHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 183 ~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~------d~~G~~r~d~i~~ii~~l~ 239 (299)
.... +..+...++|||++ +++- |+= +..||.-.+.+-..++..+
T Consensus 204 --------~GlA---~AN~laA~~aGa~~--id~t~~GlGgcpfa~eraGN~~~E~lv~~L~~~g 255 (274)
T cd07938 204 --------RGQA---LANILAALEAGVRR--FDSSVGGLGGCPFAPGATGNVATEDLVYMLEGMG 255 (274)
T ss_pred --------CChH---HHHHHHHHHhCCCE--EEEeccccCCCCCCCCccCCcCHHHHHHHHHhcC
Confidence 2333 66678899999995 5664 553 5689999887766665544
No 57
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=94.36 E-value=0.6 Score=43.13 Aligned_cols=91 Identities=16% Similarity=0.100 Sum_probs=63.1
Q ss_pred hhHHHHHHHhhcccccEEE------------eeCcccccCChhHHHHHHHHHHhCCceecC--C-cHHHHHHHhCCchHH
Q 022296 40 HNVLEDIFESMGQFVDGLK------------FSGGSHSLMPKPFIEEVVKRAHQHDVYVST--G-DWAEHLIRNGPSAFK 104 (299)
Q Consensus 40 ~~~l~DlLe~ag~yID~lK------------fg~GTs~l~p~~~l~eKI~l~~~~gV~v~~--G-tlfE~a~~qg~~~~~ 104 (299)
+..+....+...+|.|++- -|.|+..+.+++.+.+.++-.++.+++|+. . +|- . ...
T Consensus 84 ~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~~------~--~~~ 155 (233)
T cd02911 84 LEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGVD------V--DDE 155 (233)
T ss_pred HHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCcC------c--CHH
Confidence 5555555555555556554 467888888899999999999998887774 2 331 1 456
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHH
Q 022296 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVK 140 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~ 140 (299)
+..+.+.+.|.|+|-++.+.-.. ..+ .++|++++
T Consensus 156 ~la~~l~~aG~d~ihv~~~~~g~-~ad-~~~I~~i~ 189 (233)
T cd02911 156 ELARLIEKAGADIIHVDAMDPGN-HAD-LKKIRDIS 189 (233)
T ss_pred HHHHHHHHhCCCEEEECcCCCCC-CCc-HHHHHHhc
Confidence 67788899999999998765431 222 36677765
No 58
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=94.33 E-value=0.32 Score=43.90 Aligned_cols=144 Identities=17% Similarity=0.189 Sum_probs=93.6
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (299)
.+-..|..+| ||.+=.|+....-.+.+.+++-.+.... ..+. +|.- .+...++.-++.+++.|.+.|.+.
T Consensus 18 ~i~~~L~~~G--v~~iEvg~~~~~~~~~~~v~~~~~~~~~--~~~~--~~~~----~~~~~i~~~~~~~~~~g~~~i~i~ 87 (237)
T PF00682_consen 18 EIAKALDEAG--VDYIEVGFPFASEDDFEQVRRLREALPN--ARLQ--ALCR----ANEEDIERAVEAAKEAGIDIIRIF 87 (237)
T ss_dssp HHHHHHHHHT--TSEEEEEHCTSSHHHHHHHHHHHHHHHS--SEEE--EEEE----SCHHHHHHHHHHHHHTTSSEEEEE
T ss_pred HHHHHHHHhC--CCEEEEcccccCHHHHHHhhhhhhhhcc--cccc--eeee----ehHHHHHHHHHhhHhccCCEEEec
Confidence 3445677777 8888888655555555667776666666 2221 1111 121235555677889999999998
Q ss_pred CCcccC--------C----hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCcc
Q 022296 122 VGSLEI--------P----EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEI 189 (299)
Q Consensus 122 dGti~i--------~----~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (299)
...-++ + .+.-.++|+.+++.|+.| .|+..+.. ..
T Consensus 88 ~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v--~~~~~~~~-------------------------------~~ 134 (237)
T PF00682_consen 88 ISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV--AFGCEDAS-------------------------------RT 134 (237)
T ss_dssp EETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE--EEEETTTG-------------------------------GS
T ss_pred CcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce--EeCccccc-------------------------------cc
Confidence 655441 1 234457899999999998 55552110 01
Q ss_pred chhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHh
Q 022296 190 EVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 236 (299)
Q Consensus 190 ~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~ 236 (299)
+++.+ .+.+++..++|++.| .|.|..|...++.+.++++
T Consensus 135 ~~~~~---~~~~~~~~~~g~~~i-----~l~Dt~G~~~P~~v~~lv~ 173 (237)
T PF00682_consen 135 DPEEL---LELAEALAEAGADII-----YLADTVGIMTPEDVAELVR 173 (237)
T ss_dssp SHHHH---HHHHHHHHHHT-SEE-----EEEETTS-S-HHHHHHHHH
T ss_pred cHHHH---HHHHHHHHHcCCeEE-----EeeCccCCcCHHHHHHHHH
Confidence 26777 888899999999988 4788889999888888876
No 59
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=94.28 E-value=0.52 Score=48.23 Aligned_cols=128 Identities=14% Similarity=0.223 Sum_probs=89.1
Q ss_pred ccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHh-CCch-HHHHHHHHHHcCCCEEEecCCccc---
Q 022296 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRN-GPSA-FKEYVEDCKQVGFDTIELNVGSLE--- 126 (299)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~q-g~~~-~~~yl~~~k~lGF~~IEISdGti~--- 126 (299)
.-|+.+=||+||-.+.+.+.+.+.++.++++-..+. ..-|+.+.. .|+. -++.++.+++.|++.|.|+--|.+
T Consensus 217 ~~v~tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~--~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~v 294 (488)
T PRK08207 217 LKITTIYFGGGTPTSLTAEELERLLEEIYENFPDVK--NVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDET 294 (488)
T ss_pred CceeEEEEeCCCccCCCHHHHHHHHHHHHHhccccC--CceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHH
Confidence 358899999999999999999999999887521111 111333322 2322 368899999999999999877764
Q ss_pred -------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhH
Q 022296 127 -------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKS 198 (299)
Q Consensus 127 -------i~~~~r~~lI~~~~~~G~~-v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 198 (299)
-+.++-.+.++.+++.||. +...+=. +. + + .+.+.+ .
T Consensus 295 Lk~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~--GL----P-g-------------------------Et~ed~---~ 339 (488)
T PRK08207 295 LKAIGRHHTVEDIIEKFHLAREMGFDNINMDLII--GL----P-G-------------------------EGLEEV---K 339 (488)
T ss_pred HHHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEe--CC----C-C-------------------------CCHHHH---H
Confidence 6778888999999999994 3222211 11 1 1 115566 7
Q ss_pred HHHHHHHHccCcEEEEec
Q 022296 199 RRAERCLEAGADMIMIDS 216 (299)
Q Consensus 199 ~~~~~dLeAGA~~VIiEa 216 (299)
+.++..++.+.+.|-+=.
T Consensus 340 ~tl~~l~~L~pd~isv~~ 357 (488)
T PRK08207 340 HTLEEIEKLNPESLTVHT 357 (488)
T ss_pred HHHHHHHhcCcCEEEEEe
Confidence 777888889998876644
No 60
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=94.26 E-value=0.75 Score=48.19 Aligned_cols=156 Identities=12% Similarity=0.159 Sum_probs=105.7
Q ss_pred HHHHHHHhhccc-ccEEEeeCcccccCChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 022296 42 VLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (299)
Q Consensus 42 ~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IE 119 (299)
-.+..++.|.+. ||.+-+....+-+ +++++-++.+|++|..+... .+.- +=...++.+-++.+.+.+.|.+.|-
T Consensus 92 vv~~~v~~a~~~Gvd~irif~~lnd~---~n~~~~i~~ak~~G~~v~~~i~~t~-~p~~~~~~~~~~~~~~~~~Gad~I~ 167 (582)
T TIGR01108 92 VVERFVKKAVENGMDVFRIFDALNDP---RNLQAAIQAAKKHGAHAQGTISYTT-SPVHTLETYLDLAEELLEMGVDSIC 167 (582)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcH---HHHHHHHHHHHHcCCEEEEEEEecc-CCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 355556655444 9998888655443 67999999999999876643 1100 1012224566777777889999999
Q ss_pred ecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHH
Q 022296 120 LNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSR 199 (299)
Q Consensus 120 ISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 199 (299)
|.|-.--+.+.+-.++|+.+++. +. -.++..+. . | .... +-
T Consensus 168 i~Dt~G~~~P~~v~~lv~~lk~~-~~--~pi~~H~H-n------t--------------------------~Gla---~A 208 (582)
T TIGR01108 168 IKDMAGILTPKAAYELVSALKKR-FG--LPVHLHSH-A------T--------------------------TGMA---EM 208 (582)
T ss_pred ECCCCCCcCHHHHHHHHHHHHHh-CC--CceEEEec-C------C--------------------------CCcH---HH
Confidence 99999999999999999999884 11 12444321 1 1 1222 55
Q ss_pred HHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCC
Q 022296 200 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL 240 (299)
Q Consensus 200 ~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~ 240 (299)
..-..++|||+.|=.=-.|+=...||...+.+-..++..+.
T Consensus 209 n~laAveaGa~~vd~ai~GlG~~tGn~~le~vv~~L~~~g~ 249 (582)
T TIGR01108 209 ALLKAIEAGADGIDTAISSMSGGTSHPPTETMVAALRGTGY 249 (582)
T ss_pred HHHHHHHhCCCEEEeccccccccccChhHHHHHHHHHhcCC
Confidence 55789999999653333488888999888776666665553
No 61
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=94.20 E-value=0.25 Score=48.40 Aligned_cols=89 Identities=17% Similarity=0.212 Sum_probs=65.0
Q ss_pred cccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHH-HHHHHHHHcCCCEEEecCCcc------
Q 022296 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFK-EYVEDCKQVGFDTIELNVGSL------ 125 (299)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~-~yl~~~k~lGF~~IEISdGti------ 125 (299)
-|+-+=||+||..+.|.+.|++.++.++++= .+.+ -.|+.+.-+|+.++ ++++.+++.||+.|.|---|.
T Consensus 55 ~i~tiy~GGGTPs~l~~~~L~~ll~~i~~~f-~~~~--~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~ 131 (380)
T PRK09057 55 TLTSIFFGGGTPSLMQPETVAALLDAIARLW-PVAD--DIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLR 131 (380)
T ss_pred CcCeEEeCCCccccCCHHHHHHHHHHHHHhC-CCCC--CccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 5889999999999999999999999998841 1111 13555555565554 899999999999988755544
Q ss_pred ----cCChhHHHHHHHHHHHcCC
Q 022296 126 ----EIPEETLLRYVRLVKSAGL 144 (299)
Q Consensus 126 ----~i~~~~r~~lI~~~~~~G~ 144 (299)
.-+.++-.+.++.+++.+.
T Consensus 132 ~l~R~~~~~~~~~ai~~~~~~~~ 154 (380)
T PRK09057 132 FLGRLHSVAEALAAIDLAREIFP 154 (380)
T ss_pred HcCCCCCHHHHHHHHHHHHHhCc
Confidence 2245555677888888644
No 62
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=94.13 E-value=1.7 Score=44.60 Aligned_cols=154 Identities=12% Similarity=0.119 Sum_probs=107.2
Q ss_pred HHHHHHHhh-cccccEEEeeCcccccCChhHHHHHHHHHHhCCceecC--C-cHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022296 42 VLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--G-DWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (299)
Q Consensus 42 ~l~DlLe~a-g~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~--G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (299)
-.+-+++.| .+-||++-..- .+..-++++.-|+.++++|..+.. + |.-- ....+-+.++.+.+.++|.+.
T Consensus 106 vv~~fv~~a~~~Gidi~Rifd---~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp---~~t~~y~~~~a~~l~~~Gad~ 179 (468)
T PRK12581 106 IVDKFISLSAQNGIDVFRIFD---ALNDPRNIQQALRAVKKTGKEAQLCIAYTTSP---VHTLNYYLSLVKELVEMGADS 179 (468)
T ss_pred HHHHHHHHHHHCCCCEEEEcc---cCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCC---cCcHHHHHHHHHHHHHcCCCE
Confidence 344456665 55699988875 677888999999999999987542 1 2100 001113666677888999999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhh
Q 022296 118 IELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINK 197 (299)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (299)
|=|.|-.--+.+++-.++|+.+++. +.-.++..+. .. ....
T Consensus 180 I~IkDtaG~l~P~~v~~Lv~alk~~---~~~pi~~H~H-nt--------------------------------~GlA--- 220 (468)
T PRK12581 180 ICIKDMAGILTPKAAKELVSGIKAM---TNLPLIVHTH-AT--------------------------------SGIS--- 220 (468)
T ss_pred EEECCCCCCcCHHHHHHHHHHHHhc---cCCeEEEEeC-CC--------------------------------CccH---
Confidence 9999999999999999999999883 1233555321 11 1222
Q ss_pred HHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCC
Q 022296 198 SRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL 240 (299)
Q Consensus 198 i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~ 240 (299)
+...-..++|||+.|=.=-.|+-...||.-++.+-..++..+.
T Consensus 221 ~An~laAieAGad~vD~ai~g~g~gagN~~tE~lv~~L~~~g~ 263 (468)
T PRK12581 221 QMTYLAAVEAGADRIDTALSPFSEGTSQPATESMYLALKEAGY 263 (468)
T ss_pred HHHHHHHHHcCCCEEEeeccccCCCcCChhHHHHHHHHHhcCC
Confidence 5556788999999643333488888899888877777765554
No 63
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=94.11 E-value=1.5 Score=42.64 Aligned_cols=89 Identities=20% Similarity=0.325 Sum_probs=67.5
Q ss_pred cccEEEeeCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc-----
Q 022296 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL----- 125 (299)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti----- 125 (299)
-|+.+=||+||..+.+++.|++.++.++++ ++. + ..|+.+.-+|+. =++.++.+++.|++.|.|+--|.
T Consensus 51 ~i~~i~~gGGtpt~l~~~~l~~ll~~i~~~~~~~--~--~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l 126 (377)
T PRK08599 51 KLKTIYIGGGTPTALSAEQLERLLTAIHRNLPLS--G--LEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELL 126 (377)
T ss_pred ceeEEEeCCCCcccCCHHHHHHHHHHHHHhCCCC--C--CCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHH
Confidence 367788899999999999999999999986 321 0 012222223333 35889999999999999987776
Q ss_pred -----cCChhHHHHHHHHHHHcCCc
Q 022296 126 -----EIPEETLLRYVRLVKSAGLK 145 (299)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~ 145 (299)
..+.++..+.|+.+++.|+.
T Consensus 127 ~~l~r~~~~~~~~~~i~~l~~~g~~ 151 (377)
T PRK08599 127 KKIGRTHNEEDVYEAIANAKKAGFD 151 (377)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 35677888999999999986
No 64
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=94.10 E-value=0.92 Score=43.47 Aligned_cols=101 Identities=23% Similarity=0.290 Sum_probs=67.9
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc--------------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccc
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVGS--------------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRA 166 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt--------------i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~ 166 (299)
..+.+.++++.+.|...|=|-|.+ --+|.+++++.|+.+++. +.-++|-+ ...+ |
T Consensus 92 ~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a--~~~~~~~I---iART----D-- 160 (285)
T TIGR02320 92 EHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDA--QTTEDFMI---IARV----E-- 160 (285)
T ss_pred HHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHh--ccCCCeEE---EEec----c--
Confidence 366677888888999999996643 357999999999999885 11233433 1111 1
Q ss_pred ccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccC
Q 022296 167 FGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~ 239 (299)
+++.. ...++. |+++++..+||||.|++++ +....+.+.++.+.++
T Consensus 161 --a~~~~---------------~~~~eA---i~Ra~ay~eAGAD~ifv~~-------~~~~~~ei~~~~~~~~ 206 (285)
T TIGR02320 161 --SLILG---------------KGMEDA---LKRAEAYAEAGADGIMIHS-------RKKDPDEILEFARRFR 206 (285)
T ss_pred --ccccc---------------CCHHHH---HHHHHHHHHcCCCEEEecC-------CCCCHHHHHHHHHHhh
Confidence 00000 125667 9999999999999999994 1234566777776664
No 65
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=94.04 E-value=1.5 Score=39.44 Aligned_cols=114 Identities=16% Similarity=0.166 Sum_probs=69.7
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCCh-hHHHHHHHHHHH-cCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 104 KEYVEDCKQVGFDTIELNVGSLEIPE-ETLLRYVRLVKS-AGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~-~~r~~lI~~~~~-~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
.++++.|++.|-|.|-+......-|. ++..++++.+++ .|+.+.+++.
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~------------------------------ 127 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADCS------------------------------ 127 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCC------------------------------
Confidence 46789999999999988654443332 666789999998 5655443211
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCC---CcccHHHHHHHHhccCCCceEEecCCc-hhHHHHH
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHA---DSLRADIIAKVIGRLGLEKTMFEATNP-RTSEWFI 257 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~---G~~r~d~i~~ii~~l~~eklifEAP~k-~qQ~~fI 257 (299)
+ .+++++..++|+++|.+..+|..... .....+.+.++.+.++ -.++-+---+ ..+..-+
T Consensus 128 ------t---------~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~-iPvia~GGI~t~~~~~~~ 191 (221)
T PRK01130 128 ------T---------LEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVG-CPVIAEGRINTPEQAKKA 191 (221)
T ss_pred ------C---------HHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCC-CCEEEECCCCCHHHHHHH
Confidence 0 23347788999999999877764432 2234566777766553 2244444332 3344444
Q ss_pred HHhCCC
Q 022296 258 RRYGPK 263 (299)
Q Consensus 258 ~~fG~~ 263 (299)
...|.+
T Consensus 192 l~~Gad 197 (221)
T PRK01130 192 LELGAH 197 (221)
T ss_pred HHCCCC
Confidence 456643
No 66
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=94.02 E-value=0.69 Score=43.05 Aligned_cols=79 Identities=8% Similarity=0.071 Sum_probs=49.2
Q ss_pred hHHHHHHHhhccc-ccEEEeeCcccc-------cCChhHHHHHHHHHHhC-CceecC--CcHHHHHHHhCCchHHHHHHH
Q 022296 41 NVLEDIFESMGQF-VDGLKFSGGSHS-------LMPKPFIEEVVKRAHQH-DVYVST--GDWAEHLIRNGPSAFKEYVED 109 (299)
Q Consensus 41 ~~l~DlLe~ag~y-ID~lKfg~GTs~-------l~p~~~l~eKI~l~~~~-gV~v~~--GtlfE~a~~qg~~~~~~yl~~ 109 (299)
..+.+..+.+-++ +|++=+-++|-. +...+.+.+.++-.++. ++++.- ++.. ..+.+.+..+.
T Consensus 111 ~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~------~~~~~~~~a~~ 184 (289)
T cd02810 111 EDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF------DLEDIVELAKA 184 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC------CHHHHHHHHHH
Confidence 4555555555555 777777666533 33456677777777765 443332 1111 11256778888
Q ss_pred HHHcCCCEEEecCCcc
Q 022296 110 CKQVGFDTIELNVGSL 125 (299)
Q Consensus 110 ~k~lGF~~IEISdGti 125 (299)
|.+.|.|.|.+++++.
T Consensus 185 l~~~Gad~i~~~~~~~ 200 (289)
T cd02810 185 AERAGADGLTAINTIS 200 (289)
T ss_pred HHHcCCCEEEEEcccC
Confidence 8999999999988764
No 67
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=93.94 E-value=0.97 Score=47.47 Aligned_cols=153 Identities=14% Similarity=0.180 Sum_probs=106.4
Q ss_pred hhHHHHHHHhhcc-cccEEEeeCcccccCChhHHHHHHHHHHhCCceecCC---cHHHHHHHhCCchHHHHHHHHHHcCC
Q 022296 40 HNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGF 115 (299)
Q Consensus 40 ~~~l~DlLe~ag~-yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G---tlfE~a~~qg~~~~~~yl~~~k~lGF 115 (299)
-+-.+..++.|.+ -||.+.+....+-+ +++++-++.++++|..+... |+-- ...++.+-++.+.+.+.|.
T Consensus 95 d~vv~~~v~~A~~~Gvd~irif~~lnd~---~n~~~~i~~ak~~G~~v~~~i~~t~~p---~~t~~~~~~~a~~l~~~Ga 168 (592)
T PRK09282 95 DDVVEKFVEKAAENGIDIFRIFDALNDV---RNMEVAIKAAKKAGAHVQGTISYTTSP---VHTIEKYVELAKELEEMGC 168 (592)
T ss_pred chhhHHHHHHHHHCCCCEEEEEEecChH---HHHHHHHHHHHHcCCEEEEEEEeccCC---CCCHHHHHHHHHHHHHcCC
Confidence 3445666666554 59999998766655 57999999999999877521 1100 1223456667777888999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhh
Q 022296 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGI 195 (299)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (299)
+.|=|.|-.--+.+++-.++|+.+++. +. -.++..+. .+ ....
T Consensus 169 d~I~i~Dt~G~~~P~~~~~lv~~lk~~-~~--~pi~~H~H-nt--------------------------------~Gla- 211 (592)
T PRK09282 169 DSICIKDMAGLLTPYAAYELVKALKEE-VD--LPVQLHSH-CT--------------------------------SGLA- 211 (592)
T ss_pred CEEEECCcCCCcCHHHHHHHHHHHHHh-CC--CeEEEEEc-CC--------------------------------CCcH-
Confidence 999999999999999999999999984 11 12455321 11 1222
Q ss_pred hhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhccC
Q 022296 196 NKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 196 ~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~l~ 239 (299)
+...-..++|||+. |++- |+-...||...+.+-..++..+
T Consensus 212 --~An~laAv~aGad~--vD~ai~g~g~~agn~~~e~vv~~L~~~g 253 (592)
T PRK09282 212 --PMTYLKAVEAGVDI--IDTAISPLAFGTSQPPTESMVAALKGTP 253 (592)
T ss_pred --HHHHHHHHHhCCCE--EEeeccccCCCcCCHhHHHHHHHHHhCC
Confidence 55567889999996 5554 7888888888777666665444
No 68
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=93.86 E-value=0.23 Score=48.57 Aligned_cols=183 Identities=21% Similarity=0.278 Sum_probs=97.0
Q ss_pred hcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecC--------C-cHHHHHHHhCCc----hHHHHHHHHHHcCCC
Q 022296 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--------G-DWAEHLIRNGPS----AFKEYVEDCKQVGFD 116 (299)
Q Consensus 50 ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~--------G-tlfE~a~~qg~~----~~~~yl~~~k~lGF~ 116 (299)
.=+|||.+ .-|+-+++..+. ..-|+.||+|||+|.+ + .+++.++.++++ -+++.++.||.+|||
T Consensus 29 ~W~yvD~f-vywsh~~~~iPp--~~~idaAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfD 105 (339)
T cd06547 29 YWQYVDTF-VYFSHSAVTIPP--ADWINAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFD 105 (339)
T ss_pred chhhhhee-ecccCccccCCC--cHHHHHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCCC
Confidence 33688987 445555544432 4678899999999873 2 366777765222 278999999999999
Q ss_pred EEEecCCcccCChhHHHHH---HHHHHHcCCcccceeeeecCCC-----------CCCCcccccc----cccccCCCCcc
Q 022296 117 TIELNVGSLEIPEETLLRY---VRLVKSAGLKAKPKFAVMFNKS-----------DIPSDRDRAF----GAYVARAPRST 178 (299)
Q Consensus 117 ~IEISdGti~i~~~~r~~l---I~~~~~~G~~v~~E~gvK~~~s-----------evg~~~d~~~----~~~~~~~~~~~ 178 (299)
.+=|+-=+.--+.+++.++ ++.+++..=+-.|.+-+..=.+ +... ....| ..++.-+-|..
T Consensus 106 Gw~iN~E~~~~~~~~~~~l~~F~~~L~~~~~~~~~~~~v~WYDs~t~~G~l~wQn~Ln~-~N~~ff~~~D~~FlNY~W~~ 184 (339)
T cd06547 106 GWLINIETELGDAEKAKRLIAFLRYLKAKLHENVPGSLVIWYDSMTEDGKLSWQNELNS-KNKPFFDVCDGIFLNYWWTE 184 (339)
T ss_pred ceEeeeeccCCcHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCCCccchhhhhhH-HHHHHHhhhcceeEecCCCc
Confidence 9888776654244444444 4444443111111221110000 0000 00000 12344566643
Q ss_pred chhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecC
Q 022296 179 DKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 248 (299)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP 248 (299)
... +-+++.. .++.+-..++=||.|.. +||.+ ..|++.++..-..+.+.++.-=|| ||
T Consensus 185 ~~l------~~s~~~a-~~~g~~~~dvy~GiDv~---grg~~-~~~~~~~~~~~~~~~~~~~Svalf-ap 242 (339)
T cd06547 185 ESL------ERSVQLA-EGLGRSPYDVYVGVDVW---GRGTK-GGGGWNSDKALDEIKKAGLSVALF-AP 242 (339)
T ss_pred chH------HHHHHHH-HHcCCCHhHEEEEEEEE---cCCcc-cCCCCchhhhhhhhcccCeEEEEE-cC
Confidence 311 0111111 11222245666777644 78755 356666565555666677766777 66
No 69
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=93.85 E-value=1.7 Score=40.59 Aligned_cols=146 Identities=15% Similarity=0.181 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccccCCCCc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~ 177 (299)
.++++++++-+.|.+.+=+... +..|+.++|.++++.+.+. +=++.-=+|+
T Consensus 23 ~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv------------------------- 77 (289)
T PF00701_consen 23 ALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGV------------------------- 77 (289)
T ss_dssp HHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEE-------------------------
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecC-------------------------
Confidence 6888999999999999988654 4689999999999998883 1111111122
Q ss_pred cchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccCC----CcccH
Q 022296 178 TDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKHA----DSLRA 228 (299)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~~----G~~r~ 228 (299)
...+.++. |+.++..-++|||.|++=.- -||+.- -++..
T Consensus 78 ---------~~~st~~~---i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~ 145 (289)
T PF00701_consen 78 ---------GANSTEEA---IELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSP 145 (289)
T ss_dssp ---------ESSSHHHH---HHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHH
T ss_pred ---------cchhHHHH---HHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCH
Confidence 01225666 88889999999999998752 256653 46778
Q ss_pred HHHHHHHhccC-CCceEEecCCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCCC
Q 022296 229 DIIAKVIGRLG-LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGK 286 (299)
Q Consensus 229 d~i~~ii~~l~-~eklifEAP~k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~~~G~ 286 (299)
+.+.++.+ ++ +-=+=....+..+...++++.++++.+... +|-.-+.+|..|.-|-
T Consensus 146 ~~l~~L~~-~~nv~giK~s~~~~~~~~~~~~~~~~~~~v~~G-~d~~~~~~l~~G~~G~ 202 (289)
T PF00701_consen 146 ETLARLAK-IPNVVGIKDSSGDLERLIQLLRAVGPDFSVFCG-DDELLLPALAAGADGF 202 (289)
T ss_dssp HHHHHHHT-STTEEEEEESSSBHHHHHHHHHHSSTTSEEEES-SGGGHHHHHHTTSSEE
T ss_pred HHHHHHhc-CCcEEEEEcCchhHHHHHHHhhhcccCeeeecc-ccccccccccccCCEE
Confidence 88888877 54 222223344555667778888888887666 4444578888776553
No 70
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=93.79 E-value=0.77 Score=44.00 Aligned_cols=98 Identities=16% Similarity=0.272 Sum_probs=69.7
Q ss_pred chhHHHHHHHhhcc-cccEEEeeCcccccCChhHHHHHHHHHHhCC-c---eecC-CcHHHHHHHhCCchHHHHHHHHHH
Q 022296 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-V---YVST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (299)
Q Consensus 39 g~~~l~DlLe~ag~-yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g-V---~v~~-GtlfE~a~~qg~~~~~~yl~~~k~ 112 (299)
...++..+++.+.+ -+..+.|.+|.-.+.+ .+.+.++.+++++ + .+.| |+++ .++.+.+++
T Consensus 46 s~eei~~li~~~~~~Gv~~I~~tGGEPllr~--dl~~li~~i~~~~~l~~i~itTNG~ll-----------~~~~~~L~~ 112 (329)
T PRK13361 46 SLEELAWLAQAFTELGVRKIRLTGGEPLVRR--GCDQLVARLGKLPGLEELSLTTNGSRL-----------ARFAAELAD 112 (329)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECcCCCccc--cHHHHHHHHHhCCCCceEEEEeChhHH-----------HHHHHHHHH
Confidence 45577777765443 3788999999988876 5888999888875 2 2344 4443 346677889
Q ss_pred cCCCEEEecCCccc----------CChhHHHHHHHHHHHcCC-cccce
Q 022296 113 VGFDTIELNVGSLE----------IPEETLLRYVRLVKSAGL-KAKPK 149 (299)
Q Consensus 113 lGF~~IEISdGti~----------i~~~~r~~lI~~~~~~G~-~v~~E 149 (299)
.|++.|-||=.+++ -+.+.-.+.|+.+++.|+ .++-.
T Consensus 113 aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in 160 (329)
T PRK13361 113 AGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLN 160 (329)
T ss_pred cCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEE
Confidence 99999999987763 234567788888999888 44433
No 71
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=93.77 E-value=1 Score=42.14 Aligned_cols=101 Identities=22% Similarity=0.371 Sum_probs=73.3
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCcccccCChhHHHHHHHHHHhCCc-e--ecC-CcHHHHHHHhCCchHHHHHHHHHHc
Q 022296 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-Y--VST-GDWAEHLIRNGPSAFKEYVEDCKQV 113 (299)
Q Consensus 39 g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV-~--v~~-GtlfE~a~~qg~~~~~~yl~~~k~l 113 (299)
....+..+++.+.++ +..+.|.+|--.+.+ .+.+.++.++++|+ . +.| |+++ +++++.+++.
T Consensus 41 s~eei~~~i~~~~~~gi~~I~~tGGEPll~~--~l~~iv~~l~~~g~~~v~i~TNG~ll-----------~~~~~~l~~~ 107 (302)
T TIGR02668 41 SPEEIERIVRVASEFGVRKVKITGGEPLLRK--DLIEIIRRIKDYGIKDVSMTTNGILL-----------EKLAKKLKEA 107 (302)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECccccccc--CHHHHHHHHHhCCCceEEEEcCchHH-----------HHHHHHHHHC
Confidence 566788888766554 788999999988766 47789999999976 3 344 5543 3456678889
Q ss_pred CCCEEEecCCccc----------CChhHHHHHHHHHHHcCCc-ccceeee
Q 022296 114 GFDTIELNVGSLE----------IPEETLLRYVRLVKSAGLK-AKPKFAV 152 (299)
Q Consensus 114 GF~~IEISdGti~----------i~~~~r~~lI~~~~~~G~~-v~~E~gv 152 (299)
|++.|-||=.+.+ -+.+...+.|+.+++.|+. ++-.+.+
T Consensus 108 g~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~ 157 (302)
T TIGR02668 108 GLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVV 157 (302)
T ss_pred CCCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 9999999876652 2456677889999999886 4443333
No 72
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=93.69 E-value=0.96 Score=46.74 Aligned_cols=171 Identities=13% Similarity=0.088 Sum_probs=113.9
Q ss_pred CCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChh-----------HHHHHHHHHHhCCceecC
Q 022296 20 KPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVST 88 (299)
Q Consensus 20 KPR~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV~v~~ 88 (299)
+++-.++++.+.+++... -...++.+++ .-+|.+-+...||-++-+. .+++-++.++++|..|..
T Consensus 69 ~~~i~~~~~~~~~~i~~~-~d~~~e~~~~---~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~ 144 (524)
T PRK12344 69 HAKLAAFGSTRRAGVSAE-EDPNLQALLD---AGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIF 144 (524)
T ss_pred CcEEEEEeeccccCCCcc-cHHHHHHHHh---CCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 355556665556665321 1123333333 3467788887777654333 345788999999999887
Q ss_pred Cc-HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc
Q 022296 89 GD-WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF 167 (299)
Q Consensus 89 Gt-lfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~ 167 (299)
+. ++.-+.+..++.+-++++.+.+.|.+.|-+.|-.--+.+.+-.++|+.++++= ...+++.+. . |
T Consensus 145 ~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~~---~v~i~~H~H-N------D--- 211 (524)
T PRK12344 145 DAEHFFDGYKANPEYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAAP---GVPLGIHAH-N------D--- 211 (524)
T ss_pred ccccccccccCCHHHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHhc---CCeEEEEEC-C------C---
Confidence 63 33223344555677788888999999999999999999999999999998851 223444321 1 1
Q ss_pred cccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHH
Q 022296 168 GAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVI 235 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii 235 (299)
.... +-.+...++|||+. ||+- |+=+..||...+.+-..+
T Consensus 212 -----------------------~GlA---~ANslaAi~aGa~~--Vd~Tl~GlGERaGNa~lE~lv~~L 253 (524)
T PRK12344 212 -----------------------SGCA---VANSLAAVEAGARQ--VQGTINGYGERCGNANLCSIIPNL 253 (524)
T ss_pred -----------------------CChH---HHHHHHHHHhCCCE--EEEecccccccccCcCHHHHHHHH
Confidence 2233 55667889999996 6775 888888998877665333
No 73
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=93.68 E-value=1.5 Score=41.15 Aligned_cols=111 Identities=18% Similarity=0.221 Sum_probs=85.5
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCC
Q 022296 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASN 186 (299)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
++.+...|-|+|=+.... ++.++..++++.+++.|+.+.-|+.-
T Consensus 126 i~~a~~~GAD~VlLi~~~--l~~~~l~~li~~a~~lGl~~lvevh~---------------------------------- 169 (260)
T PRK00278 126 IYEARAAGADAILLIVAA--LDDEQLKELLDYAHSLGLDVLVEVHD---------------------------------- 169 (260)
T ss_pred HHHHHHcCCCEEEEEecc--CCHHHHHHHHHHHHHcCCeEEEEeCC----------------------------------
Confidence 788999999999998877 46789999999999988887766544
Q ss_pred CccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCC-ceEEecCC-chhHHHHHHHhCCCc
Q 022296 187 PEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE-KTMFEATN-PRTSEWFIRRYGPKV 264 (299)
Q Consensus 187 ~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~e-klifEAP~-k~qQ~~fI~~fG~~V 264 (299)
.+++++.+++||++|-+-.|.+-. -....+...+++..++-+ .+|-|+=- ...+...+...|.+.
T Consensus 170 -----------~~E~~~A~~~gadiIgin~rdl~~--~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~ 236 (260)
T PRK00278 170 -----------EEELERALKLGAPLIGINNRNLKT--FEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADA 236 (260)
T ss_pred -----------HHHHHHHHHcCCCEEEECCCCccc--ccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCE
Confidence 223366789999999998775422 234477788888877644 67889875 477788888889887
Q ss_pred cc
Q 022296 265 NL 266 (299)
Q Consensus 265 NL 266 (299)
=|
T Consensus 237 vl 238 (260)
T PRK00278 237 VL 238 (260)
T ss_pred EE
Confidence 66
No 74
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=93.58 E-value=0.73 Score=45.60 Aligned_cols=88 Identities=18% Similarity=0.397 Sum_probs=66.8
Q ss_pred ccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc----
Q 022296 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE---- 126 (299)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~---- 126 (299)
..|+-+=||+||-.+.+.+.|++.++.++++. .+.+. .|+.+.-+|+.+ +++++.++++|++.|.|.--|.+
T Consensus 61 ~~i~tiy~GGGTPs~l~~~~l~~ll~~i~~~~-~~~~~--~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L 137 (390)
T PRK06582 61 KYIKSIFFGGGTPSLMNPVIVEGIINKISNLA-IIDNQ--TEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDL 137 (390)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHHhC-CCCCC--CEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHH
Confidence 46999999999999999999999999999863 11111 245555577666 79999999999999988766652
Q ss_pred ------CChhHHHHHHHHHHHc
Q 022296 127 ------IPEETLLRYVRLVKSA 142 (299)
Q Consensus 127 ------i~~~~r~~lI~~~~~~ 142 (299)
-+.++-.+.++.+++.
T Consensus 138 ~~lgR~h~~~~~~~ai~~~~~~ 159 (390)
T PRK06582 138 KKLGRTHDCMQAIKTIEAANTI 159 (390)
T ss_pred HHcCCCCCHHHHHHHHHHHHHh
Confidence 2455666778888775
No 75
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=93.54 E-value=2.1 Score=41.81 Aligned_cols=141 Identities=15% Similarity=0.208 Sum_probs=93.2
Q ss_pred HHHHHHHhhcccccEEEeeC-----------cccccCChhHHHHHHHHHHhCCce--ecCCcHHHHHHHhCCchHHHHHH
Q 022296 42 VLEDIFESMGQFVDGLKFSG-----------GSHSLMPKPFIEEVVKRAHQHDVY--VSTGDWAEHLIRNGPSAFKEYVE 108 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~-----------GTs~l~p~~~l~eKI~l~~~~gV~--v~~GtlfE~a~~qg~~~~~~yl~ 108 (299)
.+-..|+.+| ||.+=+|. |.....+.+.+++-.+..+..-+- .-|| .+ .. +-++
T Consensus 28 ~ia~~Ld~aG--V~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg--------~~--~~-~dl~ 94 (333)
T TIGR03217 28 AIAAALDEAG--VDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPG--------IG--TV-HDLK 94 (333)
T ss_pred HHHHHHHHcC--CCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccC--------cc--CH-HHHH
Confidence 4445566677 77777762 344445556666666554432221 1133 11 23 4478
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCc
Q 022296 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPE 188 (299)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 188 (299)
.+.+.|.+.|-|....-+.+ .-.+.|+.+++.|+.|. +...... .
T Consensus 95 ~a~~~gvd~iri~~~~~e~d--~~~~~i~~ak~~G~~v~--~~l~~s~-------------------------------~ 139 (333)
T TIGR03217 95 AAYDAGARTVRVATHCTEAD--VSEQHIGMARELGMDTV--GFLMMSH-------------------------------M 139 (333)
T ss_pred HHHHCCCCEEEEEeccchHH--HHHHHHHHHHHcCCeEE--EEEEccc-------------------------------C
Confidence 99999999999987655543 34689999999998754 2332100 0
Q ss_pred cchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 189 IEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 189 ~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
.+++.+ +++++...++||+.| .|.|..|...++.+.+++..+
T Consensus 140 ~~~e~l---~~~a~~~~~~Ga~~i-----~i~DT~G~~~P~~v~~~v~~l 181 (333)
T TIGR03217 140 TPPEKL---AEQAKLMESYGADCV-----YIVDSAGAMLPDDVRDRVRAL 181 (333)
T ss_pred CCHHHH---HHHHHHHHhcCCCEE-----EEccCCCCCCHHHHHHHHHHH
Confidence 226788 999999999999976 478899999999888888644
No 76
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=93.50 E-value=2.9 Score=35.09 Aligned_cols=88 Identities=23% Similarity=0.320 Sum_probs=64.0
Q ss_pred ccEEEeeCcccccCChhHHHHHHHHHHhCC-----ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---
Q 022296 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-----VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--- 125 (299)
Q Consensus 54 ID~lKfg~GTs~l~p~~~l~eKI~l~~~~g-----V~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti--- 125 (299)
++.+-|++|+..+.+.+.+.+.++.++++. ..+...| .+...-++.++.+++.|++.|-+|=-+.
T Consensus 52 ~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t-------n~~~~~~~~~~~l~~~~~~~i~isl~~~~~~ 124 (216)
T smart00729 52 VGTVFIGGGTPTLLSPEQLEELLEAIREILGLADDVEITIET-------RPGTLTEELLEALKEAGVNRVSLGVQSGSDE 124 (216)
T ss_pred eeEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEe-------CcccCCHHHHHHHHHcCCCeEEEecccCCHH
Confidence 588999999999999877888888888874 2222221 1111236789999999999998876653
Q ss_pred -------cCChhHHHHHHHHHHHcC-Ccccc
Q 022296 126 -------EIPEETLLRYVRLVKSAG-LKAKP 148 (299)
Q Consensus 126 -------~i~~~~r~~lI~~~~~~G-~~v~~ 148 (299)
.-+.+...+.|+.+++.| +.+..
T Consensus 125 ~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~ 155 (216)
T smart00729 125 VLKAINRGHTVEDVLEAVEKLREAGPIKVST 155 (216)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhCCcceEE
Confidence 345688889999999999 44433
No 77
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=93.49 E-value=1.9 Score=38.85 Aligned_cols=146 Identities=16% Similarity=0.185 Sum_probs=82.6
Q ss_pred chHHHHHHHHHHcCCCEEEecC-CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccc
Q 022296 101 SAFKEYVEDCKQVGFDTIELNV-GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTD 179 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISd-Gti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~ 179 (299)
..+++.++.|+++||+.||++. +....+.++..++.+.+++.|+++..--...+.. . .|..-..+
T Consensus 15 ~~l~~~l~~~~~~G~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~--~------------~~~~~~~~ 80 (274)
T COG1082 15 LPLEEILRKAAELGFDGVELSPGDLFPADYKELAELKELLADYGLEITSLAPFSNNL--L------------SPDEEERE 80 (274)
T ss_pred CCHHHHHHHHHHhCCCeEecCCcccCCchhhhHHHHHHHHHHcCcEEEeecccCCCc--C------------CCchhhHH
Confidence 4789999999999999999998 4444444447888889999888865533332110 0 01000000
Q ss_pred hhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccC------CCcc--cHHHH---HHHHhccCCCceEEec-
Q 022296 180 KLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKH------ADSL--RADII---AKVIGRLGLEKTMFEA- 247 (299)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~------~G~~--r~d~i---~~ii~~l~~eklifEA- 247 (299)
-.++.+ .+.++-.-+.||.+|++..-..... ...+ -.+.+ ..+++.. -=++-+|.
T Consensus 81 ---------~~~~~~---~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~-~i~l~~e~~ 147 (274)
T COG1082 81 ---------EALEEL---KRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEEL-GIGLALENH 147 (274)
T ss_pred ---------HHHHHH---HHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHh-CCceEEeec
Confidence 013334 3455557778999888776321111 1111 12222 2333334 33455664
Q ss_pred --C-----CchhHHHHHHHhCCCcccc--cCCCCch
Q 022296 248 --T-----NPRTSEWFIRRYGPKVNLF--VDHSQVM 274 (299)
Q Consensus 248 --P-----~k~qQ~~fI~~fG~~VNLg--I~~~eVi 274 (299)
| +..|...++...+.. |+| +|+.+..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~lD~~H~~ 182 (274)
T COG1082 148 HHPGNVVETGADALDLLREVDSP-NVGLLLDTGHAF 182 (274)
T ss_pred CCccceeecCHHHHHHHHhcCCC-ceEEEEecCchh
Confidence 3 335567888888876 665 6655543
No 78
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=93.41 E-value=1.6 Score=41.24 Aligned_cols=144 Identities=12% Similarity=0.045 Sum_probs=92.8
Q ss_pred chHHHHHHHHHH-cCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 101 SAFKEYVEDCKQ-VGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 101 ~~~~~yl~~~k~-lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
+.++++++++.+ .|.+.|=+.-.+ ..|+.++|+++++.+.+. ..-+.+.
T Consensus 24 ~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~-------~~~~~~v-------------------- 76 (293)
T PRK04147 24 QGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEE-------AKGKVKL-------------------- 76 (293)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHH-------hCCCCCE--------------------
Confidence 368899999999 999999886653 579999999999998883 2211000
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecCCchh---H
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRT---S 253 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP~k~q---Q 253 (299)
.+++...+.++. |+.++..-++||+.|++=.--.+...-+---+-..+|++..++.=+++-.|.... -
T Consensus 77 ------iagvg~~~t~~a---i~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~ 147 (293)
T PRK04147 77 ------IAQVGSVNTAEA---QELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLS 147 (293)
T ss_pred ------EecCCCCCHHHH---HHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCC
Confidence 001111225666 9999999999999999987644443211123334566777777778888875322 3
Q ss_pred HHHHHHhCCCccc-c--cCCCCchhhhhhh
Q 022296 254 EWFIRRYGPKVNL-F--VDHSQVMDLECLR 280 (299)
Q Consensus 254 ~~fI~~fG~~VNL-g--I~~~eVi~LE~LR 280 (299)
..++.++-..=|+ | -...++..+..++
T Consensus 148 ~~~l~~L~~~pnvvgiK~s~~d~~~~~~~~ 177 (293)
T PRK04147 148 LDQFNELFTLPKVIGVKQTAGDLYQLERIR 177 (293)
T ss_pred HHHHHHHhcCCCEEEEEeCCCCHHHHHHHH
Confidence 4555555433344 3 4455666666555
No 79
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=93.37 E-value=1.9 Score=42.30 Aligned_cols=144 Identities=20% Similarity=0.268 Sum_probs=94.0
Q ss_pred hHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 022296 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (299)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEI 120 (299)
-.+-+.|+.+| ||.+=+||= ..+++ -.+.++...+.+.....-+|. + ...+-++.+.+.|++.|.|
T Consensus 25 ~~ia~~L~~~G--v~~IEvG~p---~~~~~-~~e~i~~i~~~~~~~~v~~~~-----r---~~~~di~~a~~~g~~~i~i 90 (363)
T TIGR02090 25 VEIARKLDELG--VDVIEAGFP---IASEG-EFEAIKKISQEGLNAEICSLA-----R---ALKKDIDKAIDCGVDSIHT 90 (363)
T ss_pred HHHHHHHHHcC--CCEEEEeCC---CCChH-HHHHHHHHHhcCCCcEEEEEc-----c---cCHHHHHHHHHcCcCEEEE
Confidence 35566778888 888888863 33333 245555555544322222333 1 1244578889999999999
Q ss_pred cCCcccC--------Ch----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCc
Q 022296 121 NVGSLEI--------PE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPE 188 (299)
Q Consensus 121 SdGti~i--------~~----~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 188 (299)
+..+-++ +. +.-.+.|+.+++.|++| +|+..+. + .
T Consensus 91 ~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v--~~~~eda----~---------------------------r 137 (363)
T TIGR02090 91 FIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIV--EFSAEDA----T---------------------------R 137 (363)
T ss_pred EEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEE--EEEEeec----C---------------------------C
Confidence 7765333 33 44457889999999875 4555211 0 0
Q ss_pred cchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccC
Q 022296 189 IEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 189 ~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~ 239 (299)
.+++.+ ++.++...++||+.|. |+|..|...++.+.++++.+-
T Consensus 138 ~~~~~l---~~~~~~~~~~g~~~i~-----l~DT~G~~~P~~v~~li~~l~ 180 (363)
T TIGR02090 138 TDIDFL---IKVFKRAEEAGADRIN-----IADTVGVLTPQKMEELIKKLK 180 (363)
T ss_pred CCHHHH---HHHHHHHHhCCCCEEE-----EeCCCCccCHHHHHHHHHHHh
Confidence 126777 8888888999998764 688889888888888887653
No 80
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=93.37 E-value=1.3 Score=41.76 Aligned_cols=78 Identities=18% Similarity=0.132 Sum_probs=47.9
Q ss_pred hHHHHHHHhhccc--ccEEEeeC--------cccccCChhHHHHHHHHHHhC-CceecC-CcHHHHHHHhCCchHHHHHH
Q 022296 41 NVLEDIFESMGQF--VDGLKFSG--------GSHSLMPKPFIEEVVKRAHQH-DVYVST-GDWAEHLIRNGPSAFKEYVE 108 (299)
Q Consensus 41 ~~l~DlLe~ag~y--ID~lKfg~--------GTs~l~p~~~l~eKI~l~~~~-gV~v~~-GtlfE~a~~qg~~~~~~yl~ 108 (299)
..+.+..+.+-++ .|++=+-. |.......+.+.+.++-.+++ ++++.- -+. +.+.+.++.+
T Consensus 104 ~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~-------~~~~~~~~a~ 176 (301)
T PRK07259 104 EEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP-------NVTDIVEIAK 176 (301)
T ss_pred HHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC-------CchhHHHHHH
Confidence 3444444444455 67765511 555666677888888888876 555543 111 1124566777
Q ss_pred HHHHcCCCEEEecCCcc
Q 022296 109 DCKQVGFDTIELNVGSL 125 (299)
Q Consensus 109 ~~k~lGF~~IEISdGti 125 (299)
.+.+.|.|.|.+++.+.
T Consensus 177 ~l~~~G~d~i~~~nt~~ 193 (301)
T PRK07259 177 AAEEAGADGLSLINTLK 193 (301)
T ss_pred HHHHcCCCEEEEEcccc
Confidence 88888999998876554
No 81
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=93.29 E-value=1.6 Score=46.03 Aligned_cols=171 Identities=12% Similarity=0.067 Sum_probs=121.6
Q ss_pred CCCceeEe----cCCCCCCcchhHHHHHHHhhccc-ccEEEeeCcccccCChhHHHHHHHHHHhCCceec-----CCcHH
Q 022296 23 RFGVTEMR----SPHYTLSSSHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS-----TGDWA 92 (299)
Q Consensus 23 ~~GlT~V~----DkGl~~~~g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~-----~Gtlf 92 (299)
++-+-|.+ -+||... .-+-.+-.++.|.++ ||++-..- +|-.-++++.-|+.++++|..+. ++.-
T Consensus 75 nt~lqmL~Rg~N~vGy~~~-~d~vv~~~v~~a~~~Gidv~Rifd---~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp- 149 (596)
T PRK14042 75 NTQLSMLLRGQNLLGYRNY-ADDVVRAFVKLAVNNGVDVFRVFD---ALNDARNLKVAIDAIKSHKKHAQGAICYTTSP- 149 (596)
T ss_pred CCceEEEeccccccccccC-ChHHHHHHHHHHHHcCCCEEEEcc---cCcchHHHHHHHHHHHHcCCEEEEEEEecCCC-
Confidence 45677777 7788666 556677788875555 99988875 67777889999999999998543 3421
Q ss_pred HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 022296 93 EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 172 (299)
Q Consensus 93 E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~ 172 (299)
...++.+.++.+.+.++|.+.|=|.|-.--+.+.+-.++|+.+++. +. -.++..+. + +
T Consensus 150 ----~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~-~~--ipi~~H~H--n-----t-------- 207 (596)
T PRK14042 150 ----VHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQA-TG--LPVHLHSH--S-----T-------- 207 (596)
T ss_pred ----CCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhh-cC--CEEEEEeC--C-----C--------
Confidence 2233456667777788999999999999999999999999999984 21 22454321 1 0
Q ss_pred CCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCC
Q 022296 173 RAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 241 (299)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~e 241 (299)
.... +...-..++|||+.|=.=-.|+-...||.-++.+-..++..+.+
T Consensus 208 ------------------~Gla---~an~laAieaGad~iD~ai~glGg~tGn~~tE~lv~~L~~~g~~ 255 (596)
T PRK14042 208 ------------------SGLA---SICHYEAVLAGCNHIDTAISSFSGGASHPPTEALVAALTDTPYD 255 (596)
T ss_pred ------------------CCcH---HHHHHHHHHhCCCEEEeccccccCCCCcHhHHHHHHHHHhcCCC
Confidence 1222 44557789999996433335888888999888877777666643
No 82
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=93.21 E-value=2.2 Score=40.99 Aligned_cols=99 Identities=18% Similarity=0.245 Sum_probs=65.8
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCc--eecC-CcHHHHHHHhCCchHHHHHHHHHHcCC
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGF 115 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV--~v~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF 115 (299)
.+....+.++..|. -.+-|.+|=-.+.| .+.+.++.+++.|+ .+.| |++++- . ++..++.|.
T Consensus 60 s~ee~~~~i~e~g~--~~V~i~GGEPLL~p--dl~eiv~~~~~~g~~v~l~TNG~ll~~-------~----~~~l~~~~~ 124 (318)
T TIGR03470 60 SVEECLRAVDECGA--PVVSIPGGEPLLHP--EIDEIVRGLVARKKFVYLCTNALLLEK-------K----LDKFEPSPY 124 (318)
T ss_pred CHHHHHHHHHHcCC--CEEEEeCccccccc--cHHHHHHHHHHcCCeEEEecCceehHH-------H----HHHHHhCCC
Confidence 34355555555553 35778889888887 58999999999986 4556 766542 2 233466788
Q ss_pred CEEEec-CCcccCC---------hhHHHHHHHHHHHcCCcccceeee
Q 022296 116 DTIELN-VGSLEIP---------EETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 116 ~~IEIS-dGti~i~---------~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
..|-|| ||.-+.- .+.-.+.|+.++++|+.|...+.+
T Consensus 125 ~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~G~~v~v~~tv 171 (318)
T TIGR03470 125 LTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKARGFRVTTNTTL 171 (318)
T ss_pred cEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 889998 6643221 233457899999999876555444
No 83
>PRK00915 2-isopropylmalate synthase; Validated
Probab=93.21 E-value=1 Score=46.26 Aligned_cols=146 Identities=16% Similarity=0.163 Sum_probs=96.3
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (299)
.+-..|..+| ||.+=+||..+.=.+.+.+++..+.. .+..++. |. +-.+..++.-++..++.|.+.|-+.
T Consensus 30 ~ia~~L~~~G--v~~IE~G~p~~s~~d~~~v~~i~~~~--~~~~i~a--~~----r~~~~did~a~~a~~~~~~~~v~i~ 99 (513)
T PRK00915 30 QIAKQLERLG--VDVIEAGFPASSPGDFEAVKRIARTV--KNSTVCG--LA----RAVKKDIDAAAEALKPAEAPRIHTF 99 (513)
T ss_pred HHHHHHHHcC--CCEEEEcCCCCChHHHHHHHHHHhhC--CCCEEEE--Ec----cCCHHHHHHHHHHhhcCCCCEEEEE
Confidence 5566788888 99999999654333444454443322 2344432 11 1112257777777778999999998
Q ss_pred CCcccCChh--------H----HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCcc
Q 022296 122 VGSLEIPEE--------T----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEI 189 (299)
Q Consensus 122 dGti~i~~~--------~----r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (299)
..+-++-.+ + -.+.|+.+++.|++| +|+-.+.. ..
T Consensus 100 ~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v--~f~~ed~~-------------------------------r~ 146 (513)
T PRK00915 100 IATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDV--EFSAEDAT-------------------------------RT 146 (513)
T ss_pred ECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE--EEEeCCCC-------------------------------CC
Confidence 877544322 2 247899999999886 45552110 01
Q ss_pred chhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 190 EVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 190 ~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
+++.+ ++.++...++||+.| .|+|..|-..+..+.++++.+
T Consensus 147 d~~~l---~~~~~~~~~~Ga~~i-----~l~DTvG~~~P~~~~~~i~~l 187 (513)
T PRK00915 147 DLDFL---CRVVEAAIDAGATTI-----NIPDTVGYTTPEEFGELIKTL 187 (513)
T ss_pred CHHHH---HHHHHHHHHcCCCEE-----EEccCCCCCCHHHHHHHHHHH
Confidence 26777 888899999999865 478999999998888887654
No 84
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=93.20 E-value=4.4 Score=42.70 Aligned_cols=151 Identities=11% Similarity=0.129 Sum_probs=106.2
Q ss_pred HHHHHHHhhccc-ccEEEeeCcccccCChhHHHHHHHHHHhCCcee-----cCCcHHHHHHHhCCchHHHHHHHHHHcCC
Q 022296 42 VLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV-----STGDWAEHLIRNGPSAFKEYVEDCKQVGF 115 (299)
Q Consensus 42 ~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v-----~~GtlfE~a~~qg~~~~~~yl~~~k~lGF 115 (299)
..+..++.|.+. ||.+-+.-. +-+-+.++.-|+.++++|..+ |+++- ++ .++.+.++.+.+.+.|.
T Consensus 98 vv~~~v~~a~~~Gid~~rifd~---lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p-~~----~~~~~~~~a~~l~~~Ga 169 (593)
T PRK14040 98 VVERFVERAVKNGMDVFRVFDA---MNDPRNLETALKAVRKVGAHAQGTLSYTTSP-VH----TLQTWVDLAKQLEDMGV 169 (593)
T ss_pred HHHHHHHHHHhcCCCEEEEeee---CCcHHHHHHHHHHHHHcCCeEEEEEEEeeCC-cc----CHHHHHHHHHHHHHcCC
Confidence 456667776554 999988854 444467999999999999853 23321 11 23467778888889999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhh
Q 022296 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGI 195 (299)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (299)
+.|=|.|-.--+.+.+-.++|+.+++. +. -.+++.+. .+ ....
T Consensus 170 d~i~i~Dt~G~l~P~~~~~lv~~lk~~-~~--~pi~~H~H-nt--------------------------------~GlA- 212 (593)
T PRK14040 170 DSLCIKDMAGLLKPYAAYELVSRIKKR-VD--VPLHLHCH-AT--------------------------------TGLS- 212 (593)
T ss_pred CEEEECCCCCCcCHHHHHHHHHHHHHh-cC--CeEEEEEC-CC--------------------------------CchH-
Confidence 999999999999999999999999984 11 23555321 11 1223
Q ss_pred hhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccC
Q 022296 196 NKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 196 ~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~ 239 (299)
+...-..++|||+.|=.=-.|+=...||...+.+-..+...+
T Consensus 213 --~An~laAieAGa~~vD~ai~glG~~~Gn~~le~vv~~L~~~~ 254 (593)
T PRK14040 213 --TATLLKAIEAGIDGVDTAISSMSMTYGHSATETLVATLEGTE 254 (593)
T ss_pred --HHHHHHHHHcCCCEEEeccccccccccchhHHHHHHHHHhcC
Confidence 555678999999965333348888889988887766666544
No 85
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=93.17 E-value=0.45 Score=45.24 Aligned_cols=86 Identities=17% Similarity=0.221 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcc
Q 022296 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFL 183 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~ 183 (299)
..-.+..++.|.++|-|-|| ++..+.|+.+.++|.-|.-.+|..-. +. ..++.|....
T Consensus 97 ~~a~r~~~~aGa~aVkiEdg------~~~~~~I~al~~agIpV~gHiGL~pq-~~------~~~gg~~i~g--------- 154 (264)
T PRK00311 97 RNAGRLMKEAGAHAVKLEGG------EEVAETIKRLVERGIPVMGHLGLTPQ-SV------NVLGGYKVQG--------- 154 (264)
T ss_pred HHHHHHHHHhCCeEEEEcCc------HHHHHHHHHHHHCCCCEeeeecccce-ee------cccCCeeeec---------
Confidence 33466778899999999998 46778999999999999888888321 11 1111111110
Q ss_pred cCCCccchhhhhhhHHHHHHHHHccCcEEEEec
Q 022296 184 ASNPEIEVGVGINKSRRAERCLEAGADMIMIDS 216 (299)
Q Consensus 184 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEa 216 (299)
..+-+.+++ |+++++..+|||+.|.+|+
T Consensus 155 --rt~~~a~~~---i~ra~a~~eAGA~~i~lE~ 182 (264)
T PRK00311 155 --RDEEAAEKL---LEDAKALEEAGAFALVLEC 182 (264)
T ss_pred --CCHHHHHHH---HHHHHHHHHCCCCEEEEcC
Confidence 011124667 9999999999999999998
No 86
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=93.11 E-value=1.7 Score=39.34 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
.+++.++.++++||+.||+..-. ..+..++-+.+++.|+++..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~----~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY----DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc----cCCHHHHHHHHHHcCCeEEE
Confidence 79999999999999999996521 23566777788899999754
No 87
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=93.10 E-value=1.7 Score=44.60 Aligned_cols=146 Identities=14% Similarity=0.125 Sum_probs=102.0
Q ss_pred hcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCC---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc
Q 022296 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE 126 (299)
Q Consensus 50 ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G---tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~ 126 (299)
+..-||.+-+....+- .+++++-|+.++++|..+... |+- - ...++.+-++.+.+.+.|.+.|=|.|-.--
T Consensus 105 ~~~Gvd~irif~~lnd---~~n~~~~i~~ak~~G~~v~~~i~~t~~-p--~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~ 178 (467)
T PRK14041 105 AEYGLDIIRIFDALND---IRNLEKSIEVAKKHGAHVQGAISYTVS-P--VHTLEYYLEFARELVDMGVDSICIKDMAGL 178 (467)
T ss_pred HHCCcCEEEEEEeCCH---HHHHHHHHHHHHHCCCEEEEEEEeccC-C--CCCHHHHHHHHHHHHHcCCCEEEECCccCC
Confidence 4445999998876665 467999999999999977621 110 0 112245667777788899999999999999
Q ss_pred CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHH
Q 022296 127 IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLE 206 (299)
Q Consensus 127 i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLe 206 (299)
+.+.+-.++|+.+++. +.+ .++..+. . + .... +-..-..++
T Consensus 179 l~P~~v~~Lv~~lk~~-~~v--pI~~H~H-n------t--------------------------~GlA---~AN~laAie 219 (467)
T PRK14041 179 LTPKRAYELVKALKKK-FGV--PVEVHSH-C------T--------------------------TGLA---SLAYLAAVE 219 (467)
T ss_pred cCHHHHHHHHHHHHHh-cCC--ceEEEec-C------C--------------------------CCcH---HHHHHHHHH
Confidence 9999999999999984 211 2444211 1 1 1222 555678899
Q ss_pred ccCcEEEEeccccccCCCcccHHHHHHHHhccCC
Q 022296 207 AGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL 240 (299)
Q Consensus 207 AGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~ 240 (299)
|||+.|=.=-.|+-...||..++.+-..++..+.
T Consensus 220 aGad~vD~sv~~~g~gagN~atE~lv~~L~~~g~ 253 (467)
T PRK14041 220 AGADMFDTAISPFSMGTSQPPFESMYYAFRENGK 253 (467)
T ss_pred hCCCEEEeeccccCCCCCChhHHHHHHHHHhcCC
Confidence 9999643333488888899888877777766553
No 88
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=92.98 E-value=3.6 Score=39.19 Aligned_cols=99 Identities=21% Similarity=0.305 Sum_probs=71.7
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCcccccCChhHHHHHHHHHHh-CCc-e--ecC-CcHHHHHHHhCCchHHHHHHHHHH
Q 022296 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQ-HDV-Y--VST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (299)
Q Consensus 39 g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~-~gV-~--v~~-GtlfE~a~~qg~~~~~~yl~~~k~ 112 (299)
...++.++++.+.++ |.-+.|.+|-..+.+ .+.+.++.+++ .|+ . +.| |.++ +++++..++
T Consensus 44 s~eei~~~i~~~~~~gv~~V~ltGGEPll~~--~l~~li~~i~~~~gi~~v~itTNG~ll-----------~~~~~~L~~ 110 (334)
T TIGR02666 44 TFEEIERLVRAFVGLGVRKVRLTGGEPLLRK--DLVELVARLAALPGIEDIALTTNGLLL-----------ARHAKDLKE 110 (334)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECccccccC--CHHHHHHHHHhcCCCCeEEEEeCchhH-----------HHHHHHHHH
Confidence 566777777765544 888999999988876 58888888777 455 3 344 5443 346778899
Q ss_pred cCCCEEEecCCccc-----------CChhHHHHHHHHHHHcCCc-cccee
Q 022296 113 VGFDTIELNVGSLE-----------IPEETLLRYVRLVKSAGLK-AKPKF 150 (299)
Q Consensus 113 lGF~~IEISdGti~-----------i~~~~r~~lI~~~~~~G~~-v~~E~ 150 (299)
.|++.|-||=.+.+ -+.+...+.|+.+++.|+. ++-.+
T Consensus 111 ~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~ 160 (334)
T TIGR02666 111 AGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNT 160 (334)
T ss_pred cCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99999999965542 2457778899999999986 55443
No 89
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=92.98 E-value=0.51 Score=44.56 Aligned_cols=86 Identities=21% Similarity=0.273 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcc
Q 022296 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFL 183 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~ 183 (299)
..-.+..++.|.++|-|-|| ++..+.|+.+.++|..|..++|.. +.+ +..++.+....
T Consensus 94 ~~a~r~~~~aGa~aVkiEd~------~~~~~~I~al~~agipV~gHiGL~-pq~------~~~~gg~~~~g--------- 151 (254)
T cd06557 94 RNAARLMKEAGADAVKLEGG------AEVAETIRALVDAGIPVMGHIGLT-PQS------VNQLGGYKVQG--------- 151 (254)
T ss_pred HHHHHHHHHhCCeEEEEcCc------HHHHHHHHHHHHcCCCeecccccc-cee------eeccCCceecc---------
Confidence 33466778899999999998 477899999999999999888884 211 11111110000
Q ss_pred cCCCccchhhhhhhHHHHHHHHHccCcEEEEec
Q 022296 184 ASNPEIEVGVGINKSRRAERCLEAGADMIMIDS 216 (299)
Q Consensus 184 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEa 216 (299)
-.+-..+++ |+++++..+|||+.|.+|+
T Consensus 152 --rt~~~a~~~---i~ra~a~~~AGA~~i~lE~ 179 (254)
T cd06557 152 --KTEEEAERL---LEDALALEEAGAFALVLEC 179 (254)
T ss_pred --CCHHHHHHH---HHHHHHHHHCCCCEEEEcC
Confidence 011124667 9999999999999999997
No 90
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=92.95 E-value=2.9 Score=40.10 Aligned_cols=97 Identities=26% Similarity=0.369 Sum_probs=68.2
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCcccccCChhHHHHHHHHHHhCCcee--cC-CcHHHHHHHhCCchHHHHHHHHHHcC
Q 022296 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV--ST-GDWAEHLIRNGPSAFKEYVEDCKQVG 114 (299)
Q Consensus 39 g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v--~~-GtlfE~a~~qg~~~~~~yl~~~k~lG 114 (299)
....+.++++.+.+. +..+-|++|--.+.| .+.+.++.++++|+.+ .| |+++ -++.++.+++.|
T Consensus 38 ~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~--~~~~ii~~~~~~g~~~~l~TNG~ll----------~~e~~~~L~~~g 105 (358)
T TIGR02109 38 TTEEWTDVLTQAAELGVLQLHFSGGEPLARP--DLVELVAHARRLGLYTNLITSGVGL----------TEARLDALADAG 105 (358)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEeCccccccc--cHHHHHHHHHHcCCeEEEEeCCccC----------CHHHHHHHHhCC
Confidence 455777777665443 567889999998877 5889999999999854 34 6543 145677888899
Q ss_pred CCEEEecCCccc---------C--ChhHHHHHHHHHHHcCCccc
Q 022296 115 FDTIELNVGSLE---------I--PEETLLRYVRLVKSAGLKAK 147 (299)
Q Consensus 115 F~~IEISdGti~---------i--~~~~r~~lI~~~~~~G~~v~ 147 (299)
++.|.||=...+ . +.+.-.+.|+.+++.|+.+.
T Consensus 106 ~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~ 149 (358)
T TIGR02109 106 LDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLT 149 (358)
T ss_pred CCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceE
Confidence 999999965542 1 12333567788888887643
No 91
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=92.86 E-value=0.8 Score=48.11 Aligned_cols=96 Identities=16% Similarity=0.201 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
.++.+++.+.+.|.+.|-|.|..-++ +.-...|+.+++.|+.+..-+.... + +..
T Consensus 98 vv~~~v~~a~~~Gid~~rifd~lnd~--~~~~~ai~~ak~~G~~~~~~i~yt~--~---p~~------------------ 152 (593)
T PRK14040 98 VVERFVERAVKNGMDVFRVFDAMNDP--RNLETALKAVRKVGAHAQGTLSYTT--S---PVH------------------ 152 (593)
T ss_pred HHHHHHHHHHhcCCCEEEEeeeCCcH--HHHHHHHHHHHHcCCeEEEEEEEee--C---Ccc------------------
Confidence 68899999999999999999977776 3455789999999997654443311 1 111
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
+++.+ ++.++.-.++||+.|- |+|..|-.....+.++++.+
T Consensus 153 --------~~~~~---~~~a~~l~~~Gad~i~-----i~Dt~G~l~P~~~~~lv~~l 193 (593)
T PRK14040 153 --------TLQTW---VDLAKQLEDMGVDSLC-----IKDMAGLLKPYAAYELVSRI 193 (593)
T ss_pred --------CHHHH---HHHHHHHHHcCCCEEE-----ECCCCCCcCHHHHHHHHHHH
Confidence 15666 7778888899999764 78899999998888888755
No 92
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=92.79 E-value=1.8 Score=41.05 Aligned_cols=108 Identities=17% Similarity=0.097 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCcccccccccccCCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G-~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~ 175 (299)
.++++++++-+-|.+.|=+.-.| ..|+.++|+++++.+.+. | ..|. +|+
T Consensus 22 ~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi--~gv----------------------- 76 (294)
T TIGR02313 22 ALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFA--PGT----------------------- 76 (294)
T ss_pred HHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEE--EEC-----------------------
Confidence 67888999999999999876554 489999999999988772 1 1111 122
Q ss_pred CccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc-CCCceEEecC
Q 022296 176 RSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL-GLEKTMFEAT 248 (299)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l-~~eklifEAP 248 (299)
...+..+. |+.++..-++|||.|++-.--.+..+-+---+-...|++.. ++.=+++-.|
T Consensus 77 -----------~~~~t~~a---i~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P 136 (294)
T TIGR02313 77 -----------GALNHDET---LELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIP 136 (294)
T ss_pred -----------CcchHHHH---HHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 01124555 88999999999999999885322221111112223344445 4555555555
No 93
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=92.76 E-value=1.2 Score=43.07 Aligned_cols=110 Identities=13% Similarity=0.204 Sum_probs=77.9
Q ss_pred chhHHHHHHHhhcc-cccEEEeeCcccccCChhHHHHHHHHHHhC--CceecCCcHHHHHH--HhCCchHHHHHHHHHHc
Q 022296 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLI--RNGPSAFKEYVEDCKQV 113 (299)
Q Consensus 39 g~~~l~DlLe~ag~-yID~lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~GtlfE~a~--~qg~~~~~~yl~~~k~l 113 (299)
.+.++.+.++.+-+ .+.-+-|.+|.....+.+.+.+.++..+++ ++.++.-|-.|+.+ ....-..++.++..|+.
T Consensus 71 s~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeA 150 (343)
T TIGR03551 71 SLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEA 150 (343)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 45555555554444 477788888877777888899999999998 46655445556532 22213468999999999
Q ss_pred CCCEEE-ecCCcc-----------cCChhHHHHHHHHHHHcCCcccc
Q 022296 114 GFDTIE-LNVGSL-----------EIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 114 GF~~IE-ISdGti-----------~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
|++.+- .+.-+. .++.++|.+.|+.+++.|+++-+
T Consensus 151 Gl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s 197 (343)
T TIGR03551 151 GLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTA 197 (343)
T ss_pred CcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccc
Confidence 999884 222222 26888999999999999998866
No 94
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=92.63 E-value=0.76 Score=46.22 Aligned_cols=124 Identities=11% Similarity=0.130 Sum_probs=83.0
Q ss_pred cccEEEeeCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc-----
Q 022296 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL----- 125 (299)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti----- 125 (299)
-|+-+=||+||..+.+.+.|++.++.++++ ++. + -.|+.+.-+|+. =++.++.+++.||+.|.|---|.
T Consensus 114 ~i~~iy~GGGTPs~L~~~~l~~ll~~i~~~~~l~--~--~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vL 189 (449)
T PRK09058 114 PIHAVYFGGGTPTALSAEDLARLITALREYLPLA--P--DCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVR 189 (449)
T ss_pred eeeEEEECCCccccCCHHHHHHHHHHHHHhCCCC--C--CCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHH
Confidence 488999999999999999999999999885 221 1 123333333333 36889999999999998765554
Q ss_pred -----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHH
Q 022296 126 -----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRR 200 (299)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 200 (299)
.-+.++-.+.|+.+++.||.... +..-++. |. .+.+.+ .+.
T Consensus 190 k~lgR~~~~~~~~~~i~~l~~~g~~~v~-~DlI~Gl----------------Pg--------------qT~e~~---~~~ 235 (449)
T PRK09058 190 RRAGRKDDREEVLARLEELVARDRAAVV-CDLIFGL----------------PG--------------QTPEIW---QQD 235 (449)
T ss_pred HHhCCCCCHHHHHHHHHHHHhCCCCcEE-EEEEeeC----------------CC--------------CCHHHH---HHH
Confidence 23455666778888888865221 2222221 10 125666 777
Q ss_pred HHHHHHccCcEEEE
Q 022296 201 AERCLEAGADMIMI 214 (299)
Q Consensus 201 ~~~dLeAGA~~VIi 214 (299)
++..++.|.+.|-+
T Consensus 236 l~~~~~l~~~~is~ 249 (449)
T PRK09058 236 LAIVRDLGLDGVDL 249 (449)
T ss_pred HHHHHhcCCCEEEE
Confidence 88888899987754
No 95
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=92.47 E-value=1 Score=46.60 Aligned_cols=96 Identities=21% Similarity=0.232 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
-++.+++.+.+.|+|.+-|.|..-++ +.....|+.+++.|..+...+... .+ +..
T Consensus 98 vv~~fv~~a~~~Gidi~RIfd~lndv--~nl~~ai~~vk~ag~~~~~~i~yt--~s---p~~------------------ 152 (499)
T PRK12330 98 VVDRFVEKSAENGMDVFRVFDALNDP--RNLEHAMKAVKKVGKHAQGTICYT--VS---PIH------------------ 152 (499)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCChH--HHHHHHHHHHHHhCCeEEEEEEEe--cC---CCC------------------
Confidence 68899999999999999999999988 555678999999998776655441 11 111
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
+++.+ ++.+++-.++||+.|- |.|..|-.....+.++++.+
T Consensus 153 --------t~e~~---~~~a~~l~~~Gad~I~-----IkDtaGll~P~~~~~LV~~L 193 (499)
T PRK12330 153 --------TVEGF---VEQAKRLLDMGADSIC-----IKDMAALLKPQPAYDIVKGI 193 (499)
T ss_pred --------CHHHH---HHHHHHHHHcCCCEEE-----eCCCccCCCHHHHHHHHHHH
Confidence 26777 8889999999999774 67778888877777777554
No 96
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=92.47 E-value=1.5 Score=39.00 Aligned_cols=96 Identities=15% Similarity=0.270 Sum_probs=63.1
Q ss_pred hhHHHHHHHhhcc-cccEEEee------------CcccccCChhHHHHHHHHHHhC-CceecC---CcHHHHHHHhCCch
Q 022296 40 HNVLEDIFESMGQ-FVDGLKFS------------GGSHSLMPKPFIEEVVKRAHQH-DVYVST---GDWAEHLIRNGPSA 102 (299)
Q Consensus 40 ~~~l~DlLe~ag~-yID~lKfg------------~GTs~l~p~~~l~eKI~l~~~~-gV~v~~---GtlfE~a~~qg~~~ 102 (299)
+..+.+.-+.+-+ ..|.+++- +|++.+-..+.+.+.++-.++. ++.+.- .+|-+. ..
T Consensus 66 ~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~------~~ 139 (231)
T cd02801 66 PETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE------EE 139 (231)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCc------hH
Confidence 4455555544444 68999885 5666677788889999888764 223332 234221 26
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccC--ChhHHHHHHHHHHH
Q 022296 103 FKEYVEDCKQVGFDTIELNVGSLEI--PEETLLRYVRLVKS 141 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i--~~~~r~~lI~~~~~ 141 (299)
..++++.+.+.|++.|.|+.++... ......++++++++
T Consensus 140 ~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~ 180 (231)
T cd02801 140 TLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKE 180 (231)
T ss_pred HHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHh
Confidence 7788899999999999999987532 21223466777776
No 97
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=92.46 E-value=0.73 Score=45.04 Aligned_cols=114 Identities=10% Similarity=0.045 Sum_probs=76.3
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEI 120 (299)
.|-.-.+.+|-+ |+=....++.+.|++.|+-+++. .-.++.=+++ .......+++.++.|.+.+...|.+
T Consensus 18 ~LaaAVS~AGgL------G~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~---~~~~~~~~~~~l~vi~e~~v~~V~~ 88 (320)
T cd04743 18 EFAVAVAEGGGL------PFIALALMRGEQVKALLEETAELLGDKPWGVGIL---GFVDTELRAAQLAVVRAIKPTFALI 88 (320)
T ss_pred HHHHHHHhCCcc------ccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEe---ccCCCcchHHHHHHHHhcCCcEEEE
Confidence 455555666632 33334467788899999999884 3333220220 0011124789999999999999999
Q ss_pred cCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHH
Q 022296 121 NVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRR 200 (299)
Q Consensus 121 SdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 200 (299)
+-|. |. . ++++++.|.+|.+.++- ++.
T Consensus 89 ~~G~---P~----~-~~~lk~~Gi~v~~~v~s---------------------------------------------~~~ 115 (320)
T cd04743 89 AGGR---PD----Q-ARALEAIGISTYLHVPS---------------------------------------------PGL 115 (320)
T ss_pred cCCC---hH----H-HHHHHHCCCEEEEEeCC---------------------------------------------HHH
Confidence 8663 32 1 58899988887753321 455
Q ss_pred HHHHHHccCcEEEEecc
Q 022296 201 AERCLEAGADMIMIDSD 217 (299)
Q Consensus 201 ~~~dLeAGA~~VIiEar 217 (299)
+++.+++|||.||+|+.
T Consensus 116 A~~a~~~GaD~vVaqG~ 132 (320)
T cd04743 116 LKQFLENGARKFIFEGR 132 (320)
T ss_pred HHHHHHcCCCEEEEecC
Confidence 68899999999999997
No 98
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=92.42 E-value=1.6 Score=42.02 Aligned_cols=95 Identities=20% Similarity=0.297 Sum_probs=57.9
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 022296 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (299)
Q Consensus 92 fE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~ 171 (299)
.+.++..+.. ++++++.+-+.+.+.|-.+-|.- . .++|+.+++.|.+|.+.++-
T Consensus 92 ~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~G~p---~---~~~i~~l~~~gi~v~~~v~s------------------- 145 (330)
T PF03060_consen 92 LELCIEEGVP-FEEQLDVALEAKPDVVSFGFGLP---P---PEVIERLHAAGIKVIPQVTS------------------- 145 (330)
T ss_dssp HHHHHHTT-S-HHHHHHHHHHS--SEEEEESSSC-------HHHHHHHHHTT-EEEEEESS-------------------
T ss_pred HHHHHHhCcc-cccccccccccceEEEEeecccc---h---HHHHHHHHHcCCccccccCC-------------------
Confidence 4455555522 77888888888999999998863 2 35889999998887663321
Q ss_pred cCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc---cccc-CCCcccHHHHHHHHhccC
Q 022296 172 ARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD---DVCK-HADSLRADIIAKVIGRLG 239 (299)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar---gi~d-~~G~~r~d~i~~ii~~l~ 239 (299)
++.++..+++|||.||+|+- |-.. +.+ --..++.++.+.++
T Consensus 146 --------------------------~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~-~~~~L~~~v~~~~~ 190 (330)
T PF03060_consen 146 --------------------------VREARKAAKAGADAIVAQGPEAGGHRGFEVG-STFSLLPQVRDAVD 190 (330)
T ss_dssp --------------------------HHHHHHHHHTT-SEEEEE-TTSSEE---SSG--HHHHHHHHHHH-S
T ss_pred --------------------------HHHHHHhhhcCCCEEEEeccccCCCCCcccc-ceeeHHHHHhhhcC
Confidence 55668899999999999985 2221 222 13445555555444
No 99
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=92.33 E-value=1 Score=45.83 Aligned_cols=96 Identities=21% Similarity=0.263 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
-++++++.+.+.|++.|-|.+..-++. .....|+.+++.|+.| ++.+-... + | +
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~~--n~~~~v~~ak~~G~~v--~~~i~~t~---~------------p--~----- 150 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALNDVR--NLETAVKATKKAGGHA--QVAISYTT---S------------P--V----- 150 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcHH--HHHHHHHHHHHcCCeE--EEEEEeec---C------------C--C-----
Confidence 578899999999999999999877775 3567899999999876 44442111 0 1 0
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
.+++.+ ++.++...++||+.|- |.|..|-..+..+.++++.+
T Consensus 151 -------~~~~~~---~~~a~~l~~~Gad~I~-----i~Dt~G~l~P~~v~~lv~al 192 (448)
T PRK12331 151 -------HTIDYF---VKLAKEMQEMGADSIC-----IKDMAGILTPYVAYELVKRI 192 (448)
T ss_pred -------CCHHHH---HHHHHHHHHcCCCEEE-----EcCCCCCCCHHHHHHHHHHH
Confidence 126777 8888999999999764 67888888887777777554
No 100
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=92.27 E-value=2.2 Score=40.84 Aligned_cols=149 Identities=15% Similarity=0.204 Sum_probs=101.8
Q ss_pred chhHHHHHHHh-hcccccEEEeeCcccc-c-----------------CChhHHHHHHHHHHhCCceecCC--cHHHHHHH
Q 022296 39 SHNVLEDIFES-MGQFVDGLKFSGGSHS-L-----------------MPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIR 97 (299)
Q Consensus 39 g~~~l~DlLe~-ag~yID~lKfg~GTs~-l-----------------~p~~~l~eKI~l~~~~gV~v~~G--tlfE~a~~ 97 (299)
++..+.+++.. --.-.|++=||+=.|= + +..+..-+.++..++.++.+.-+ |++--.+.
T Consensus 29 ~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~ 108 (265)
T COG0159 29 DLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFN 108 (265)
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHH
Confidence 45566666665 4455899999986551 1 12223446667777777766555 78887788
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCc
Q 022296 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (299)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~ 177 (299)
+| +++|++.|++.|+|.+=| .+||.|+..++...++++|+..++=+.. .
T Consensus 109 ~G---ie~F~~~~~~~GvdGliv----pDLP~ee~~~~~~~~~~~gi~~I~lvaP---------------------t--- 157 (265)
T COG0159 109 YG---IEKFLRRAKEAGVDGLLV----PDLPPEESDELLKAAEKHGIDPIFLVAP---------------------T--- 157 (265)
T ss_pred hh---HHHHHHHHHHcCCCEEEe----CCCChHHHHHHHHHHHHcCCcEEEEeCC---------------------C---
Confidence 85 999999999999999876 5799999999999999988876653333 1
Q ss_pred cchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-ccccCCCcccHHHHHHHHhc
Q 022296 178 TDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-DVCKHADSLRADIIAKVIGR 237 (299)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-gi~d~~G~~r~d~i~~ii~~ 237 (299)
.+ .+. +++-.++..-+|..=++ |++........+ +.+++++
T Consensus 158 ---------t~--~~r-------l~~i~~~a~GFiY~vs~~GvTG~~~~~~~~-~~~~v~~ 199 (265)
T COG0159 158 ---------TP--DER-------LKKIAEAASGFIYYVSRMGVTGARNPVSAD-VKELVKR 199 (265)
T ss_pred ---------CC--HHH-------HHHHHHhCCCcEEEEecccccCCCcccchh-HHHHHHH
Confidence 00 122 24455666677777787 888777664444 5555544
No 101
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.25 E-value=2.3 Score=40.32 Aligned_cols=139 Identities=16% Similarity=0.133 Sum_probs=84.6
Q ss_pred hcccccEEEeeCcccccCChhHHHHHHHHHHhCCc--eecCC---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC-C
Q 022296 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV-G 123 (299)
Q Consensus 50 ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV--~v~~G---tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISd-G 123 (299)
+.+|+|++|+|-+...= .+.|++ +-+.|. .+..| |.-|.. .-++++++-|-.-|=+=. |
T Consensus 95 ~~e~vdilqIgs~~~~n--~~LL~~----va~tgkPVilk~G~~~t~~e~~---------~A~e~i~~~Gn~~i~L~eRg 159 (250)
T PRK13397 95 AYDYLDVIQVGARNMQN--FEFLKT----LSHIDKPILFKRGLMATIEEYL---------GALSYLQDTGKSNIILCERG 159 (250)
T ss_pred HHhcCCEEEECcccccC--HHHHHH----HHccCCeEEEeCCCCCCHHHHH---------HHHHHHHHcCCCeEEEEccc
Confidence 34589999999765444 334443 223455 45567 333332 233445667776555555 7
Q ss_pred cccCChhHH----HHHHHHHHH-cCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhH
Q 022296 124 SLEIPEETL----LRYVRLVKS-AGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKS 198 (299)
Q Consensus 124 ti~i~~~~r----~~lI~~~~~-~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 198 (299)
+-.-|...+ ++.|..+++ .++. +.+- +....| . -+.+ .
T Consensus 160 ~~~Y~~~~~n~~dl~ai~~lk~~~~lP----Vivd-~SHs~G---~--------------------------r~~v---~ 202 (250)
T PRK13397 160 VRGYDVETRNMLDIMAVPIIQQKTDLP----IIVD-VSHSTG---R--------------------------RDLL---L 202 (250)
T ss_pred cCCCCCccccccCHHHHHHHHHHhCCC----eEEC-CCCCCc---c--------------------------cchH---H
Confidence 766665544 466777776 2322 1120 011111 1 1223 4
Q ss_pred HHHHHHHHccCcEEEEecc-----ccccCCCcccHHHHHHHHhccCC
Q 022296 199 RRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRLGL 240 (299)
Q Consensus 199 ~~~~~dLeAGA~~VIiEar-----gi~d~~G~~r~d~i~~ii~~l~~ 240 (299)
..++..+.+||+-+|||-- -++|..-.+..+.++++++++..
T Consensus 203 ~~a~AAvA~GAdGl~IE~H~~P~~A~sD~~q~l~~~~l~~l~~~~~~ 249 (250)
T PRK13397 203 PAAKIAKAVGANGIMMEVHPDPDHALSDAAQQIDYKQLEQLGQELWQ 249 (250)
T ss_pred HHHHHHHHhCCCEEEEEecCCcccccCchhhhCCHHHHHHHHHHhcc
Confidence 5578899999999999983 69999999999999999987653
No 102
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=92.17 E-value=2 Score=40.89 Aligned_cols=101 Identities=20% Similarity=0.316 Sum_probs=72.7
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCcccccCChhHHHHHHHHHHhC----CceecC-CcHHHHHHHhCCchHHHHHHHHHH
Q 022296 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQH----DVYVST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (299)
Q Consensus 39 g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~----gV~v~~-GtlfE~a~~qg~~~~~~yl~~~k~ 112 (299)
.+.++.++++.+.++ +.-+.|.+|--.+.+ .+.+.++.++++ .|.+.| |++ ++++++.+++
T Consensus 50 s~eei~~~i~~~~~~gi~~I~~tGGEPll~~--~l~~li~~i~~~~~~~~i~itTNG~l-----------l~~~~~~L~~ 116 (331)
T PRK00164 50 SLEEIERLVRAFVALGVRKVRLTGGEPLLRK--DLEDIIAALAALPGIRDLALTTNGYL-----------LARRAAALKD 116 (331)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCcCcc--CHHHHHHHHHhcCCCceEEEEcCchh-----------HHHHHHHHHH
Confidence 556777777766655 788999999988775 588999999887 244455 543 3345677888
Q ss_pred cCCCEEEecCCccc----------CChhHHHHHHHHHHHcCC-cccceeee
Q 022296 113 VGFDTIELNVGSLE----------IPEETLLRYVRLVKSAGL-KAKPKFAV 152 (299)
Q Consensus 113 lGF~~IEISdGti~----------i~~~~r~~lI~~~~~~G~-~v~~E~gv 152 (299)
.|.+.|-||=.+.+ -+.+...+.|+.+++.|+ .++-.+-+
T Consensus 117 agl~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv 167 (331)
T PRK00164 117 AGLDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVL 167 (331)
T ss_pred cCCCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEE
Confidence 99999999955432 345777889999999998 55544433
No 103
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=91.90 E-value=3 Score=40.43 Aligned_cols=100 Identities=25% Similarity=0.290 Sum_probs=69.8
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCcccccCChhHHHHHHHHHHhCCcee--cC-CcHHHHHHHhCCchHHHHHHHHHHcC
Q 022296 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV--ST-GDWAEHLIRNGPSAFKEYVEDCKQVG 114 (299)
Q Consensus 39 g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v--~~-GtlfE~a~~qg~~~~~~yl~~~k~lG 114 (299)
....+.++++.+.++ +-.+-|.+|--.+.| .+.+.++.+++.|+.+ .| |+++- ++.++.+++.|
T Consensus 47 ~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~--~~~~il~~~~~~g~~~~i~TNG~ll~----------~~~~~~L~~~g 114 (378)
T PRK05301 47 STEEWIRVLREARALGALQLHFSGGEPLLRK--DLEELVAHARELGLYTNLITSGVGLT----------EARLAALKDAG 114 (378)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEECCccCCch--hHHHHHHHHHHcCCcEEEECCCccCC----------HHHHHHHHHcC
Confidence 455677777765443 456788889988877 5889999999999844 45 55421 34566678889
Q ss_pred CCEEEecCCccc---------C--ChhHHHHHHHHHHHcCCccccee
Q 022296 115 FDTIELNVGSLE---------I--PEETLLRYVRLVKSAGLKAKPKF 150 (299)
Q Consensus 115 F~~IEISdGti~---------i--~~~~r~~lI~~~~~~G~~v~~E~ 150 (299)
++.|.||=...+ . +.+.-.+.|+.+++.|+.|.--+
T Consensus 115 ~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~ 161 (378)
T PRK05301 115 LDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNA 161 (378)
T ss_pred CCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEE
Confidence 999999965541 1 35566778889999888754333
No 104
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=91.83 E-value=3 Score=39.56 Aligned_cols=144 Identities=12% Similarity=0.078 Sum_probs=83.0
Q ss_pred chHHHHHHHHHHcC-CCEEEecCC---cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 101 SAFKEYVEDCKQVG-FDTIELNVG---SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 101 ~~~~~yl~~~k~lG-F~~IEISdG---ti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
+.+.++++++.+.| .+.|=+.-. +..|+.++|.++++.+.+. +...+.+-.+
T Consensus 21 ~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~---~~~~~pvi~g--------------------- 76 (290)
T TIGR00683 21 KGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDE---AKDQIALIAQ--------------------- 76 (290)
T ss_pred HHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHH---hCCCCcEEEe---------------------
Confidence 36888999999999 999988755 3579999999999998883 1111111100
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc-CCCceEEecCCc---hh
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL-GLEKTMFEATNP---RT 252 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l-~~eklifEAP~k---~q 252 (299)
+...+.++. ++.++..-++|||.|++=.=-.+..+-+---+-..++++.. ++.=+++-.|.. ..
T Consensus 77 ---------v~~~~t~~~---i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l 144 (290)
T TIGR00683 77 ---------VGSVNLKEA---VELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNM 144 (290)
T ss_pred ---------cCCCCHHHH---HHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCc
Confidence 011125566 88999999999999999443222222111111223344444 355566666632 22
Q ss_pred HHHHHHHhCCCccc-c--cCCCCchhhhhhh
Q 022296 253 SEWFIRRYGPKVNL-F--VDHSQVMDLECLR 280 (299)
Q Consensus 253 Q~~fI~~fG~~VNL-g--I~~~eVi~LE~LR 280 (299)
....|.++-..-|+ | -...++-.+..++
T Consensus 145 ~~~~i~~L~~~pnv~giK~s~~d~~~~~~~~ 175 (290)
T TIGR00683 145 GIEQFGELYKNPKVLGVKFTAGDFYLLERLK 175 (290)
T ss_pred CHHHHHHHhcCCCEEEEEeCCCCHHHHHHHH
Confidence 33444444433344 3 2334555555554
No 105
>PRK00915 2-isopropylmalate synthase; Validated
Probab=91.68 E-value=1.6 Score=44.88 Aligned_cols=142 Identities=16% Similarity=0.155 Sum_probs=100.2
Q ss_pred ccEEEeeCcccccCChh-----------HHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 022296 54 VDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (299)
Q Consensus 54 ID~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISd 122 (299)
++.+-+...+|-++-+. .+.+-++.++++|..|..+ +|.+..-+++.+.++++.+.+.|.+.|-+.|
T Consensus 93 ~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~--~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~D 170 (513)
T PRK00915 93 APRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFS--AEDATRTDLDFLCRVVEAAIDAGATTINIPD 170 (513)
T ss_pred CCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE--eCCCCCCCHHHHHHHHHHHHHcCCCEEEEcc
Confidence 45566666666554322 2468899999999987754 2333344555788888999999999999999
Q ss_pred CcccCChhHHHHHHHHHHHcCCcc--cceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHH
Q 022296 123 GSLEIPEETLLRYVRLVKSAGLKA--KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRR 200 (299)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~G~~v--~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 200 (299)
-.--+.+++-.++|+.++++ +.- ...+++.+. .| .... +..
T Consensus 171 TvG~~~P~~~~~~i~~l~~~-~~~~~~v~l~~H~H-------ND--------------------------~GlA---vAN 213 (513)
T PRK00915 171 TVGYTTPEEFGELIKTLRER-VPNIDKAIISVHCH-------ND--------------------------LGLA---VAN 213 (513)
T ss_pred CCCCCCHHHHHHHHHHHHHh-CCCcccceEEEEec-------CC--------------------------CCHH---HHH
Confidence 99999999999999999874 210 013555321 11 2333 566
Q ss_pred HHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHh
Q 022296 201 AERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 236 (299)
Q Consensus 201 ~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~ 236 (299)
+...++|||++ |++- |+=+..||...+.+-..+.
T Consensus 214 slaAv~aGa~~--Vd~Tv~GlGERaGNa~lE~vv~~L~ 249 (513)
T PRK00915 214 SLAAVEAGARQ--VECTINGIGERAGNAALEEVVMALK 249 (513)
T ss_pred HHHHHHhCCCE--EEEEeecccccccCccHHHHHHHHH
Confidence 67889999996 5775 8888899988877665553
No 106
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=91.60 E-value=5 Score=37.08 Aligned_cols=103 Identities=16% Similarity=0.274 Sum_probs=64.1
Q ss_pred chhHHHHHHHhhcc-cccEEEeeCcc-cccCChhHHHH-----------------HHHHHHh-CCceecCCcHHHHHHHh
Q 022296 39 SHNVLEDIFESMGQ-FVDGLKFSGGS-HSLMPKPFIEE-----------------VVKRAHQ-HDVYVSTGDWAEHLIRN 98 (299)
Q Consensus 39 g~~~l~DlLe~ag~-yID~lKfg~GT-s~l~p~~~l~e-----------------KI~l~~~-~gV~v~~GtlfE~a~~q 98 (299)
.+..+.+.+...-+ -+|++=+|.=. -.+++-..++. .++..++ .++++..=+.+...+..
T Consensus 12 ~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~ 91 (242)
T cd04724 12 DLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQY 91 (242)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHh
Confidence 44455554444433 49999999411 12344344442 3333343 24443221334444444
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022296 99 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
| +++|++.|++.|++.|=+-| +|.|+..++++.++++|+++.+
T Consensus 92 G---~~~fi~~~~~aG~~giiipD----l~~ee~~~~~~~~~~~g~~~i~ 134 (242)
T cd04724 92 G---LERFLRDAKEAGVDGLIIPD----LPPEEAEEFREAAKEYGLDLIF 134 (242)
T ss_pred C---HHHHHHHHHHCCCcEEEECC----CCHHHHHHHHHHHHHcCCcEEE
Confidence 3 89999999999999998864 5678888999999999887544
No 107
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=91.53 E-value=5.5 Score=35.06 Aligned_cols=69 Identities=22% Similarity=0.225 Sum_probs=41.5
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (299)
..+.+.+.-+++|=+- +..+...+.+-++.++++|+++.++ ..+|....+..+.+.++|.|.|-+.
T Consensus 68 ~~~~~~~~Gad~i~vh-------~~~~~~~~~~~i~~~~~~g~~~~~~-------~~~~~t~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 68 EAEQAFAAGADIVTVL-------GVADDATIKGAVKAAKKHGKEVQVD-------LINVKDKVKRAKELKELGADYIGVH 133 (206)
T ss_pred HHHHHHHcCCCEEEEe-------ccCCHHHHHHHHHHHHHcCCEEEEE-------ecCCCChHHHHHHHHHcCCCEEEEc
Confidence 3666666665555433 2234445788888899999977642 0012223344455667799999886
Q ss_pred CCc
Q 022296 122 VGS 124 (299)
Q Consensus 122 dGt 124 (299)
.|+
T Consensus 134 pg~ 136 (206)
T TIGR03128 134 TGL 136 (206)
T ss_pred CCc
Confidence 654
No 108
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=91.47 E-value=12 Score=35.03 Aligned_cols=176 Identities=14% Similarity=0.128 Sum_probs=101.0
Q ss_pred chhHHHHHHHh-hcccccEEEeeCccc-ccCCh-----------------hHHHHHHHHHHh--CCceecCC-cHHHHHH
Q 022296 39 SHNVLEDIFES-MGQFVDGLKFSGGSH-SLMPK-----------------PFIEEVVKRAHQ--HDVYVSTG-DWAEHLI 96 (299)
Q Consensus 39 g~~~l~DlLe~-ag~yID~lKfg~GTs-~l~p~-----------------~~l~eKI~l~~~--~gV~v~~G-tlfE~a~ 96 (299)
.+..+.+++.. .-.-+|++=+|.=.| .+.+- +.+-+-++-.++ .++++. - +...-.+
T Consensus 22 ~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv-~m~Y~Npi~ 100 (256)
T TIGR00262 22 TLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG-LLTYYNLIF 100 (256)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE-EEEeccHHh
Confidence 44555664443 344599999997321 01111 122233333443 355544 3 5556666
Q ss_pred HhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 97 RNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 97 ~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
..| +++|++.|++.|++.|=|=| +|.++..++++.+++.|+.+.+=+.- .
T Consensus 101 ~~G---~e~f~~~~~~aGvdgviipD----lp~ee~~~~~~~~~~~gl~~i~lv~P---------------------~-- 150 (256)
T TIGR00262 101 RKG---VEEFYAKCKEVGVDGVLVAD----LPLEESGDLVEAAKKHGVKPIFLVAP---------------------N-- 150 (256)
T ss_pred hhh---HHHHHHHHHHcCCCEEEECC----CChHHHHHHHHHHHHCCCcEEEEECC---------------------C--
Confidence 554 89999999999999998875 57788899999999988875432222 1
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHH---HHHhccCCCceEEecCCc-hh
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIA---KVIGRLGLEKTMFEATNP-RT 252 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~---~ii~~l~~eklifEAP~k-~q 252 (299)
|. .+. ++.+.+ ...|--++|- ..|++.....+..++.+ ++-+..+. .|+.+-=-+ ..
T Consensus 151 ---------T~---~er----i~~i~~-~~~gfiy~vs-~~G~TG~~~~~~~~~~~~i~~lr~~~~~-pi~vgfGI~~~e 211 (256)
T TIGR00262 151 ---------AD---DER----LKQIAE-KSQGFVYLVS-RAGVTGARNRAASALNELVKRLKAYSAK-PVLVGFGISKPE 211 (256)
T ss_pred ---------CC---HHH----HHHHHH-hCCCCEEEEE-CCCCCCCcccCChhHHHHHHHHHhhcCC-CEEEeCCCCCHH
Confidence 00 111 333322 2334455544 23777665455555333 33232222 566666554 66
Q ss_pred HHHHHHHhCCCc
Q 022296 253 SEWFIRRYGPKV 264 (299)
Q Consensus 253 Q~~fI~~fG~~V 264 (299)
|..-+..+|.|.
T Consensus 212 ~~~~~~~~GADg 223 (256)
T TIGR00262 212 QVKQAIDAGADG 223 (256)
T ss_pred HHHHHHHcCCCE
Confidence 777788888873
No 109
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=91.30 E-value=0.86 Score=41.70 Aligned_cols=48 Identities=19% Similarity=0.318 Sum_probs=32.9
Q ss_pred CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHH
Q 022296 83 DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVR 137 (299)
Q Consensus 83 gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~ 137 (299)
||.++.|- -.+ |. +-+.+.++.||+.|+.+.=.++|+. |.+...+++.
T Consensus 41 GVt~SGGE---Pll-q~-~fl~~l~~~~k~~gi~~~leTnG~~--~~~~~~~l~~ 88 (213)
T PRK10076 41 GVTLSGGE---VLM-QA-EFATRFLQRLRLWGVSCAIETAGDA--PASKLLPLAK 88 (213)
T ss_pred EEEEeCch---HHc-CH-HHHHHHHHHHHHcCCCEEEECCCCC--CHHHHHHHHH
Confidence 66666662 222 22 1457899999999999999999986 4455545544
No 110
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=91.20 E-value=3.1 Score=40.73 Aligned_cols=141 Identities=18% Similarity=0.189 Sum_probs=90.8
Q ss_pred hHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCC--ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 022296 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (299)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g--V~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~I 118 (299)
..+-+.|..+| ||.+=+||-++.=.+ .+.++...+.+ ..++ +| .+ ..++-++.+.+.|.+.|
T Consensus 26 ~~ia~~L~~~G--v~~IEvG~p~~~~~~----~e~i~~i~~~~~~~~i~--~~-----~r---~~~~di~~a~~~g~~~i 89 (365)
T TIGR02660 26 LAIARALDEAG--VDELEVGIPAMGEEE----RAVIRAIVALGLPARLM--AW-----CR---ARDADIEAAARCGVDAV 89 (365)
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCCHHH----HHHHHHHHHcCCCcEEE--EE-----cC---CCHHHHHHHHcCCcCEE
Confidence 35566778888 889999976654222 23344444432 3222 11 12 12455788889999999
Q ss_pred EecCCccc--------CChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCC
Q 022296 119 ELNVGSLE--------IPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASN 186 (299)
Q Consensus 119 EISdGti~--------i~~~~----r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
-+...+-+ .+.++ -.+.|+.+++.|++| +|+-.+. .
T Consensus 90 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v--~~~~ed~-----~------------------------- 137 (365)
T TIGR02660 90 HISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFV--SVGGEDA-----S------------------------- 137 (365)
T ss_pred EEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEE--EEeecCC-----C-------------------------
Confidence 98876533 22222 337899999999864 3443110 0
Q ss_pred CccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 187 PEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 187 ~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
..+++.+ ++.++...++||+.| .|+|..|-..+..+.++++.+
T Consensus 138 -r~~~~~l---~~~~~~~~~~Ga~~i-----~l~DT~G~~~P~~v~~lv~~l 180 (365)
T TIGR02660 138 -RADPDFL---VELAEVAAEAGADRF-----RFADTVGILDPFSTYELVRAL 180 (365)
T ss_pred -CCCHHHH---HHHHHHHHHcCcCEE-----EEcccCCCCCHHHHHHHHHHH
Confidence 0126777 888888899999976 488999999988888877654
No 111
>PLN02417 dihydrodipicolinate synthase
Probab=91.16 E-value=0.39 Score=45.17 Aligned_cols=78 Identities=9% Similarity=0.047 Sum_probs=57.5
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCcccccccccccCC
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G-~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~ 174 (299)
+.+.++++++-+.|.+.|=+.-.+ ..|+.++|.++++.+.+. | +.|. +|+
T Consensus 22 ~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi--~gv---------------------- 77 (280)
T PLN02417 22 EAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVI--GNT---------------------- 77 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEE--EEC----------------------
Confidence 368889999999999999875443 489999999999998873 1 1111 122
Q ss_pred CCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc
Q 022296 175 PRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD 217 (299)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar 217 (299)
...+..+. ++.++..-++|||.|++-.-
T Consensus 78 ------------~~~~t~~~---i~~a~~a~~~Gadav~~~~P 105 (280)
T PLN02417 78 ------------GSNSTREA---IHATEQGFAVGMHAALHINP 105 (280)
T ss_pred ------------CCccHHHH---HHHHHHHHHcCCCEEEEcCC
Confidence 11125566 89999999999999999764
No 112
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=91.11 E-value=1.4 Score=42.35 Aligned_cols=79 Identities=14% Similarity=0.180 Sum_probs=51.6
Q ss_pred hHHHHHHHhhcccccEEEeeCcccc------cCChhHHHHHHHHHHhC------Cc----eecCCcHHHHHHHhCCchHH
Q 022296 41 NVLEDIFESMGQFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQH------DV----YVSTGDWAEHLIRNGPSAFK 104 (299)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~------l~p~~~l~eKI~l~~~~------gV----~v~~GtlfE~a~~qg~~~~~ 104 (299)
..+..+++.++++.|++=+-+++-. ...++.+.+.++..++. ++ ++.|+ +- . +.+.
T Consensus 148 ~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~-~~-----~--~~~~ 219 (327)
T cd04738 148 EDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPD-LS-----D--EELE 219 (327)
T ss_pred HHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCC-CC-----H--HHHH
Confidence 4566666777788888888775443 34456677776666542 13 34443 11 1 1466
Q ss_pred HHHHHHHHcCCCEEEecCCcccC
Q 022296 105 EYVEDCKQVGFDTIELNVGSLEI 127 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i 127 (299)
+..+.|.+.|.|.|.+++.+..+
T Consensus 220 ~ia~~l~~aGad~I~~~n~~~~~ 242 (327)
T cd04738 220 DIADVALEHGVDGIIATNTTISR 242 (327)
T ss_pred HHHHHHHHcCCcEEEEECCcccc
Confidence 77788899999999999987654
No 113
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=91.10 E-value=2.4 Score=37.01 Aligned_cols=92 Identities=15% Similarity=0.098 Sum_probs=60.3
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhC--CceecCC-cHHHHHHHhCCchHHHHHHHHHHcCC
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGF 115 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF 115 (299)
.+....++++...++||.+|+|+ ...++.. -+-|+..+++ ++++... +.. ++ -..+++.+.+.|.
T Consensus 11 ~~~~~~~~~~~l~~~i~~ieig~--~~~~~~g--~~~i~~i~~~~~~~~i~~~~~v~------~~--~~~~~~~~~~aGa 78 (202)
T cd04726 11 DLEEALELAKKVPDGVDIIEAGT--PLIKSEG--MEAVRALREAFPDKIIVADLKTA------DA--GALEAEMAFKAGA 78 (202)
T ss_pred CHHHHHHHHHHhhhcCCEEEcCC--HHHHHhC--HHHHHHHHHHCCCCEEEEEEEec------cc--cHHHHHHHHhcCC
Confidence 56788899999999999999964 2222211 2344444443 6655443 222 21 1234688999999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 022296 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (299)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (299)
+.|=+..-+ +.+.-.++++.+++.|.+
T Consensus 79 d~i~~h~~~---~~~~~~~~i~~~~~~g~~ 105 (202)
T cd04726 79 DIVTVLGAA---PLSTIKKAVKAAKKYGKE 105 (202)
T ss_pred CEEEEEeeC---CHHHHHHHHHHHHHcCCe
Confidence 999987654 234556799999998765
No 114
>PRK07094 biotin synthase; Provisional
Probab=91.07 E-value=8.2 Score=36.54 Aligned_cols=89 Identities=18% Similarity=0.238 Sum_probs=67.8
Q ss_pred cccEEEeeCcccccCChhHHHHHHHHHHh-CCceec--CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc----
Q 022296 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQ-HDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL---- 125 (299)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~-~gV~v~--~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti---- 125 (299)
-+..+-|..|+...++.+.+.+.++..++ .++.+. +|. .-++.++..++.|++.|-++--+.
T Consensus 86 g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~l~i~~~~g~-----------~~~e~l~~Lk~aG~~~v~~glEs~~~~~ 154 (323)
T PRK07094 86 GYRTIVLQSGEDPYYTDEKIADIIKEIKKELDVAITLSLGE-----------RSYEEYKAWKEAGADRYLLRHETADKEL 154 (323)
T ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHccCCceEEEecCC-----------CCHHHHHHHHHcCCCEEEeccccCCHHH
Confidence 46778888887666777889999999998 477543 332 236788899999999987755444
Q ss_pred ------cCChhHHHHHHHHHHHcCCcccceeee
Q 022296 126 ------EIPEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 126 ------~i~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
..+.+++.+.|+.+++.|+.|.+-+-+
T Consensus 155 ~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~ii 187 (323)
T PRK07094 155 YAKLHPGMSFENRIACLKDLKELGYEVGSGFMV 187 (323)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHcCCeecceEEE
Confidence 477899999999999999987664433
No 115
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=91.04 E-value=5 Score=38.64 Aligned_cols=134 Identities=16% Similarity=0.187 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-------------cCChhHHH
Q 022296 70 PFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-------------EIPEETLL 133 (299)
Q Consensus 70 ~~l~eKI~l~~~~gV~v~~---GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-------------~i~~~~r~ 133 (299)
+.+..-=++++.-+|+|.- .||-+.. .+.+-++...+.|.-.|-|-|+.. -+|.++..
T Consensus 62 e~~~~~~~I~~~~~lPv~aD~d~GyG~~~------~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~ 135 (290)
T TIGR02321 62 THLEMMRAIASTVSIPLIADIDTGFGNAV------NVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQ 135 (290)
T ss_pred HHHHHHHHHHhccCCCEEEECCCCCCCcH------HHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHH
Confidence 3444445566777787774 1343221 244556677799999999988751 25888888
Q ss_pred HHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEE
Q 022296 134 RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIM 213 (299)
Q Consensus 134 ~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VI 213 (299)
+-|+.+++. +.-++|-+ ...+ |. + |. + ...++. |+++++..+||||.|.
T Consensus 136 ~kI~Aa~~a--~~~~d~~I---~ART----Da----~-----~~-------~---~g~deA---I~Ra~aY~eAGAD~if 184 (290)
T TIGR02321 136 GKIAAATAA--RADRDFVV---IARV----EA----L-----IA-------G---LGQQEA---VRRGQAYEEAGADAIL 184 (290)
T ss_pred HHHHHHHHh--CCCCCEEE---EEEe----cc----c-----cc-------c---CCHHHH---HHHHHHHHHcCCCEEE
Confidence 888888775 22234444 1111 10 0 00 0 114677 9999999999999999
Q ss_pred EeccccccCCCcccHHHHHHHHhccCC-Cce-EEec
Q 022296 214 IDSDDVCKHADSLRADIIAKVIGRLGL-EKT-MFEA 247 (299)
Q Consensus 214 iEargi~d~~G~~r~d~i~~ii~~l~~-ekl-ifEA 247 (299)
+|+. ....+.+.++.+.++. -.+ +.+.
T Consensus 185 v~~~-------~~~~~ei~~~~~~~~~p~pv~~~~~ 213 (290)
T TIGR02321 185 IHSR-------QKTPDEILAFVKSWPGKVPLVLVPT 213 (290)
T ss_pred ecCC-------CCCHHHHHHHHHhcCCCCCeEEecC
Confidence 9972 2357889999988873 234 5554
No 116
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=91.02 E-value=3.7 Score=42.51 Aligned_cols=172 Identities=13% Similarity=0.120 Sum_probs=117.9
Q ss_pred CCceeEe----cCCCCCCcchhHHHHHHHhhc-ccccEEEeeCcccccCChhHHHHHHHHHHhCCcee-----cCCcHHH
Q 022296 24 FGVTEMR----SPHYTLSSSHNVLEDIFESMG-QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV-----STGDWAE 93 (299)
Q Consensus 24 ~GlT~V~----DkGl~~~~g~~~l~DlLe~ag-~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v-----~~GtlfE 93 (299)
+-+.|.. =+||.-. .-+-.+..++.+. .-||++-+.-..+-+ ++++.-++.++++|-.+ |+++-
T Consensus 77 t~lqmL~Rg~N~vGy~~y-~ddvv~~fv~~a~~~Gidi~RIfd~lndv---~nl~~ai~~vk~ag~~~~~~i~yt~sp-- 150 (499)
T PRK12330 77 SRLQMLLRGQNLLGYRHY-EDEVVDRFVEKSAENGMDVFRVFDALNDP---RNLEHAMKAVKKVGKHAQGTICYTVSP-- 150 (499)
T ss_pred CeEEEEEcccccCCccCc-chhHHHHHHHHHHHcCCCEEEEEecCChH---HHHHHHHHHHHHhCCeEEEEEEEecCC--
Confidence 4466665 4666555 4445566666654 559999998876666 57999999999999844 23321
Q ss_pred HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccC
Q 022296 94 HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (299)
Q Consensus 94 ~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~ 173 (299)
...++.+.++.+.+.+.|.+.|=|.|-.--+.+++-.++|+.+++. +...-.+++.+. .+
T Consensus 151 ---~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~-~~~~ipI~~H~H-nt--------------- 210 (499)
T PRK12330 151 ---IHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEA-CGEDTRINLHCH-ST--------------- 210 (499)
T ss_pred ---CCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHh-CCCCCeEEEEeC-CC---------------
Confidence 2244567777788889999999999999999999999999999984 100112444221 11
Q ss_pred CCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCC
Q 022296 174 APRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 241 (299)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~e 241 (299)
.... +...-..++|||+.|=.=-.|+=...|+.-++.+-..++..+.+
T Consensus 211 -----------------~GlA---~An~laAieAGad~vDtai~Glg~~aGn~atE~vv~~L~~~g~~ 258 (499)
T PRK12330 211 -----------------TGVT---LVSLMKAIEAGVDVVDTAISSMSLGPGHNPTESLVEMLEGTGYT 258 (499)
T ss_pred -----------------CCcH---HHHHHHHHHcCCCEEEeecccccccccchhHHHHHHHHHhcCCC
Confidence 1222 55567899999996433334888888998888777777666643
No 117
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=91.01 E-value=4.4 Score=37.96 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=49.7
Q ss_pred hHHHHHHHhhccc-ccEEEeeCcc--------cccCChhHHHHHHHHHHhC-CceecCC-cHHHHHHHhCCchHHHHHHH
Q 022296 41 NVLEDIFESMGQF-VDGLKFSGGS--------HSLMPKPFIEEVVKRAHQH-DVYVSTG-DWAEHLIRNGPSAFKEYVED 109 (299)
Q Consensus 41 ~~l~DlLe~ag~y-ID~lKfg~GT--------s~l~p~~~l~eKI~l~~~~-gV~v~~G-tlfE~a~~qg~~~~~~yl~~ 109 (299)
..+.+..+.+-++ .|++=+-++| .....++.+.+.++-.+++ ++++..- +. +.+.+.+..+.
T Consensus 102 ~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~-------~~~~~~~~a~~ 174 (296)
T cd04740 102 EEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP-------NVTDIVEIARA 174 (296)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC-------CchhHHHHHHH
Confidence 3444444444455 6777664443 3445667788888888887 7766642 11 11246677788
Q ss_pred HHHcCCCEEEecCCcc
Q 022296 110 CKQVGFDTIELNVGSL 125 (299)
Q Consensus 110 ~k~lGF~~IEISdGti 125 (299)
+.+.|.|.|-++|.+.
T Consensus 175 ~~~~G~d~i~~~nt~~ 190 (296)
T cd04740 175 AEEAGADGLTLINTLK 190 (296)
T ss_pred HHHcCCCEEEEECCCc
Confidence 8899999998876543
No 118
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=90.92 E-value=2.1 Score=40.10 Aligned_cols=144 Identities=13% Similarity=0.096 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCcc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~ 178 (299)
.+.++++++-+.|.+.|=+.-. +..|+.++|.++++.+.+. +...+-+-
T Consensus 20 ~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~---~~~~~~vi------------------------- 71 (285)
T TIGR00674 20 ALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDL---VNGRVPVI------------------------- 71 (285)
T ss_pred HHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHH---hCCCCeEE-------------------------
Confidence 6788899999999999987322 2589999999999998884 11111110
Q ss_pred chhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-------------------------ccccC---CC-cccHH
Q 022296 179 DKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-------------------------DVCKH---AD-SLRAD 229 (299)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-------------------------gi~d~---~G-~~r~d 229 (299)
+++...+.++. +++++..-++|||.|++=.- -||+. .| .+..+
T Consensus 72 -----~gv~~~s~~~~---i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~ 143 (285)
T TIGR00674 72 -----AGTGSNATEEA---ISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPE 143 (285)
T ss_pred -----EeCCCccHHHH---HHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHH
Confidence 00011225666 99999999999999998752 14543 23 45677
Q ss_pred HHHHHHhccCCCceEE--e-cCCchhHHHHHHHhCCCcccccCCCCchhhhhhhcccCC
Q 022296 230 IIAKVIGRLGLEKTMF--E-ATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 285 (299)
Q Consensus 230 ~i~~ii~~l~~eklif--E-AP~k~qQ~~fI~~fG~~VNLgI~~~eVi~LE~LR~~~~G 285 (299)
++.++++ .+ +++. + .++......++.++++++.+....+ -+-+++++.|.-|
T Consensus 144 ~l~~L~~-~~--~v~giK~s~~d~~~~~~l~~~~~~~~~v~~G~d-~~~~~~~~~G~~G 198 (285)
T TIGR00674 144 TVKRLAE-EP--NIVAIKEATGNLERISEIKAIAPDDFVVLSGDD-ALTLPMMALGGKG 198 (285)
T ss_pred HHHHHHc-CC--CEEEEEeCCCCHHHHHHHHHhcCCCeEEEECch-HHHHHHHHcCCCE
Confidence 7777763 33 3433 3 3345556667777777666654433 3456777766544
No 119
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=90.86 E-value=2.8 Score=40.14 Aligned_cols=124 Identities=12% Similarity=0.037 Sum_probs=77.6
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
+++.++++++.+.|.+.|=+.-.| ..|+.++|.++++.+.+. +=++.-=+|+
T Consensus 29 ~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv------------------------ 84 (309)
T cd00952 29 DETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGA------------------------ 84 (309)
T ss_pred HHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEe------------------------
Confidence 378899999999999999885543 489999999999998873 1011111122
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc-CCCceEEecCCc---hh
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL-GLEKTMFEATNP---RT 252 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l-~~eklifEAP~k---~q 252 (299)
...+.++. ++.++..-++|||.|++=.--.+..+-+---+-..+|++.. ++.=+++-.|.. +.
T Consensus 85 ----------~~~~t~~a---i~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l 151 (309)
T cd00952 85 ----------TTLNTRDT---IARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDF 151 (309)
T ss_pred ----------ccCCHHHH---HHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCC
Confidence 11225666 99999999999999999875222222111122234455555 355566666633 33
Q ss_pred HHHHHHHhC
Q 022296 253 SEWFIRRYG 261 (299)
Q Consensus 253 Q~~fI~~fG 261 (299)
-..+++++-
T Consensus 152 ~~~~l~~L~ 160 (309)
T cd00952 152 PRAAWAELA 160 (309)
T ss_pred CHHHHHHHh
Confidence 344555554
No 120
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=90.86 E-value=1.7 Score=45.66 Aligned_cols=96 Identities=16% Similarity=0.193 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
-++++++.+.+.|++.|-|.+..-++ +.-.+.|+.+++.|+.|. +.+-.-. +| +
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~--~n~~~~i~~ak~~G~~v~--~~i~~t~---------------~p--~----- 150 (592)
T PRK09282 97 VVEKFVEKAAENGIDIFRIFDALNDV--RNMEVAIKAAKKAGAHVQ--GTISYTT---------------SP--V----- 150 (592)
T ss_pred hhHHHHHHHHHCCCCEEEEEEecChH--HHHHHHHHHHHHcCCEEE--EEEEecc---------------CC--C-----
Confidence 58899999999999999999888776 455678999999998754 3331111 01 1
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
.+++.+ ++.+++-.++||+.|- |+|..|-.....+.++++.+
T Consensus 151 -------~t~~~~---~~~a~~l~~~Gad~I~-----i~Dt~G~~~P~~~~~lv~~l 192 (592)
T PRK09282 151 -------HTIEKY---VELAKELEEMGCDSIC-----IKDMAGLLTPYAAYELVKAL 192 (592)
T ss_pred -------CCHHHH---HHHHHHHHHcCCCEEE-----ECCcCCCcCHHHHHHHHHHH
Confidence 126777 8888999999999774 78999999998888888655
No 121
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=90.78 E-value=2.4 Score=40.74 Aligned_cols=123 Identities=15% Similarity=0.205 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhCCceecC-C--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----------cCChhHHHHHH
Q 022296 71 FIEEVVKRAHQHDVYVST-G--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-----------EIPEETLLRYV 136 (299)
Q Consensus 71 ~l~eKI~l~~~~gV~v~~-G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-----------~i~~~~r~~lI 136 (299)
.+..--++++..+|+|.- . ||-+ +..+.+.++...+.|...|-|-|.+. -+|.++.++-|
T Consensus 61 ~~~~~~~I~~~~~iPviaD~d~GyG~------~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI 134 (285)
T TIGR02317 61 VAEDARRITRVTDLPLLVDADTGFGE------AFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKI 134 (285)
T ss_pred HHHHHHHHHhccCCCEEEECCCCCCC------HHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHH
Confidence 344444456667888775 2 4533 22455677888899999999999653 36888888888
Q ss_pred HHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEec
Q 022296 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDS 216 (299)
Q Consensus 137 ~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEa 216 (299)
+.+++.-- -++|-+ ...+ |. + + .. ..++. |+++++..+||||.|.+|+
T Consensus 135 ~Aa~~a~~--~~d~~I---iART----Da-~--------~---------~~--g~deA---I~Ra~ay~~AGAD~vfi~g 182 (285)
T TIGR02317 135 AAAVDAKR--DEDFVI---IART----DA-R--------A---------VE--GLDAA---IERAKAYVEAGADMIFPEA 182 (285)
T ss_pred HHHHHhcc--CCCEEE---EEEc----Cc-c--------c---------cc--CHHHH---HHHHHHHHHcCCCEEEeCC
Confidence 88887421 133433 1111 10 0 0 01 15677 9999999999999999997
Q ss_pred cccccCCCcccHHHHHHHHhccC
Q 022296 217 DDVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 217 rgi~d~~G~~r~d~i~~ii~~l~ 239 (299)
- -..+.++++.+.++
T Consensus 183 ~--------~~~e~i~~~~~~i~ 197 (285)
T TIGR02317 183 L--------TSLEEFRQFAKAVK 197 (285)
T ss_pred C--------CCHHHHHHHHHhcC
Confidence 2 12566777777766
No 122
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=90.76 E-value=8.1 Score=36.62 Aligned_cols=170 Identities=21% Similarity=0.251 Sum_probs=112.9
Q ss_pred CCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccC--C--hhHHHHHHHHHHh-CCceecC--C-cH
Q 022296 20 KPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLM--P--KPFIEEVVKRAHQ-HDVYVST--G-DW 91 (299)
Q Consensus 20 KPR~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~--p--~~~l~eKI~l~~~-~gV~v~~--G-tl 91 (299)
+-+..|++.|...|. .+..++..++.|..|= .+-.+.|.+... . ++.+.+..+++.+ ..|..-. | .+
T Consensus 25 ~a~~~gv~~~~~~g~----~~~~~~~~~~la~~y~-~v~~~~G~HP~~~~~~~~~~~~~l~~~~~~~~~vvaIGEiGLDy 99 (256)
T COG0084 25 RAREAGVKKMVVVGT----DLEDFKRALELAEKYP-NVYAAVGVHPLDADEHSEEDLEELEQLAEHHPKVVAIGEIGLDY 99 (256)
T ss_pred HHHHcCCcEEEEeec----CHHHHHHHHHHHHhCC-CeEEEEeeCCCccccccHHHHHHHHHHHhcCCCeEEEEecccCc
Confidence 446679999999999 5558888888888886 888899988887 4 5567777777765 3443322 4 32
Q ss_pred H-----HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccc
Q 022296 92 A-----EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRA 166 (299)
Q Consensus 92 f-----E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~ 166 (299)
. +.-.++- .|..+++.+++++.-.|==+-+ ....+++.+++.+. +--|+-...+
T Consensus 100 ~~~~~~~~~~Q~~--~F~~ql~lA~~~~lPviIH~R~-------A~~d~~~iL~~~~~---~~~gi~HcFs--------- 158 (256)
T COG0084 100 YWDKEPDKERQEE--VFEAQLELAKELNLPVIIHTRD-------AHEDTLEILKEEGA---PVGGVLHCFS--------- 158 (256)
T ss_pred cccccccHHHHHH--HHHHHHHHHHHcCCCEEEEccc-------cHHHHHHHHHhcCC---CCCEEEEccC---------
Confidence 1 3444555 7999999999999877654443 23355666666543 1224432222
Q ss_pred ccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEe
Q 022296 167 FGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFE 246 (299)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifE 246 (299)
.+ ++++++.++.| .+|=+=+- |+..+ ...+.+++..+|+++|+.|
T Consensus 159 --------------------Gs---------~e~a~~~~d~G-~yisisG~-itfk~----a~~~~ev~~~iPldrLL~E 203 (256)
T COG0084 159 --------------------GS---------AEEARKLLDLG-FYISISGI-VTFKN----AEKLREVARELPLDRLLLE 203 (256)
T ss_pred --------------------CC---------HHHHHHHHHcC-eEEEECce-eecCC----cHHHHHHHHhCCHhHeEec
Confidence 11 56679999999 44444322 44433 4457889999999999999
Q ss_pred cCCc
Q 022296 247 ATNP 250 (299)
Q Consensus 247 AP~k 250 (299)
..-|
T Consensus 204 TDsP 207 (256)
T COG0084 204 TDAP 207 (256)
T ss_pred cCCC
Confidence 6543
No 123
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=90.71 E-value=2.8 Score=43.35 Aligned_cols=145 Identities=11% Similarity=0.071 Sum_probs=101.1
Q ss_pred ccEEEeeCcccccCChhH-----------HHHHHHHHHhCCce-ecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022296 54 VDGLKFSGGSHSLMPKPF-----------IEEVVKRAHQHDVY-VSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (299)
Q Consensus 54 ID~lKfg~GTs~l~p~~~-----------l~eKI~l~~~~gV~-v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (299)
+|.+-+-..+|-++-+.. +.+-|++++++|.. |..|. |.+..-+++-+.++++.+.+.|-+.|-+.
T Consensus 182 ~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~--EDa~Rtd~efl~~~~~~a~~~Gad~I~l~ 259 (503)
T PLN03228 182 RPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGC--EDGGRSDKEFLCKILGEAIKAGATSVGIA 259 (503)
T ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecc--ccccccCHHHHHHHHHHHHhcCCCEEEEe
Confidence 356777777776664332 47788899999974 55553 44555555677889999999999999999
Q ss_pred CCcccCChhHHHHHHHHHHHcCCccc--ceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHH
Q 022296 122 VGSLEIPEETLLRYVRLVKSAGLKAK--PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSR 199 (299)
Q Consensus 122 dGti~i~~~~r~~lI~~~~~~G~~v~--~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 199 (299)
|-.--+.+.+-.++|+.+++. +.-. ..+++.+. .| .... +.
T Consensus 260 DTvG~~tP~~v~~lV~~l~~~-~~~~~~i~I~~H~H-------ND--------------------------~GlA---vA 302 (503)
T PLN03228 260 DTVGINMPHEFGELVTYVKAN-TPGIDDIVFSVHCH-------ND--------------------------LGLA---TA 302 (503)
T ss_pred cCCCCCCHHHHHHHHHHHHHH-hccccCceeEeccc-------CC--------------------------cChH---HH
Confidence 999999999999999999873 1100 11333211 11 2233 55
Q ss_pred HHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhc
Q 022296 200 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGR 237 (299)
Q Consensus 200 ~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~ 237 (299)
.+-..++|||++|=.==-||=+..||.-.+.+-..+..
T Consensus 303 NslaAi~aGa~~Vd~Tv~GiGERaGNa~lEevv~~L~~ 340 (503)
T PLN03228 303 NTIAGICAGARQVEVTINGIGERSGNASLEEVVMALKC 340 (503)
T ss_pred HHHHHHHhCCCEEEEeccccccccCCccHHHHHHHHHh
Confidence 56778999999985433488888999888776655543
No 124
>PRK09389 (R)-citramalate synthase; Provisional
Probab=90.69 E-value=2.8 Score=42.98 Aligned_cols=150 Identities=17% Similarity=0.206 Sum_probs=104.9
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHH
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDC 110 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~ 110 (299)
.++..+++ | +|.+-+...+|-++-+ +.+.+-++.++++|..|..+ +|.+...+++-+.++++.+
T Consensus 78 di~~a~~~-g--~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~--~ed~~r~~~~~l~~~~~~~ 152 (488)
T PRK09389 78 DIDAALEC-D--VDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELS--GEDASRADLDFLKELYKAG 152 (488)
T ss_pred HHHHHHhC-C--cCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEE--EeeCCCCCHHHHHHHHHHH
Confidence 44444443 3 6778888888776422 34566678999999866543 1334444555677788888
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccc
Q 022296 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIE 190 (299)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (299)
.+.|.+.|-+.|-.--+.+.+-.++|+.+++. +. ..+++.+. . |
T Consensus 153 ~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~-~~--v~l~~H~H-N------D-------------------------- 196 (488)
T PRK09389 153 IEAGADRICFCDTVGILTPEKTYELFKRLSEL-VK--GPVSIHCH-N------D-------------------------- 196 (488)
T ss_pred HhCCCCEEEEecCCCCcCHHHHHHHHHHHHhh-cC--CeEEEEec-C------C--------------------------
Confidence 99999999999999999999999999999874 22 23455322 1 1
Q ss_pred hhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhc
Q 022296 191 VGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGR 237 (299)
Q Consensus 191 ~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~ 237 (299)
.... +-.+...++|||+. ||+- |+=+..||...+.+-..+..
T Consensus 197 ~GlA---vANalaAv~aGa~~--Vd~Ti~GiGERaGNa~lE~lv~~L~~ 240 (488)
T PRK09389 197 FGLA---VANTLAALAAGADQ--VHVTINGIGERAGNASLEEVVMALKH 240 (488)
T ss_pred ccHH---HHHHHHHHHcCCCE--EEEEcccccccccCccHHHHHHHHHh
Confidence 2333 56668899999996 6775 88889999988877665543
No 125
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=90.63 E-value=2.9 Score=40.43 Aligned_cols=125 Identities=16% Similarity=0.173 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHhCCceecC-C--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----------cCChhHHHHH
Q 022296 70 PFIEEVVKRAHQHDVYVST-G--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-----------EIPEETLLRY 135 (299)
Q Consensus 70 ~~l~eKI~l~~~~gV~v~~-G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-----------~i~~~~r~~l 135 (299)
+.+..--++++..+++|.- + ||-+.. .+.+.++...+.|.-.|-|-|... -+|.++..+-
T Consensus 64 e~~~~~~~I~~~~~lPv~aD~dtGyG~~~------~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~k 137 (294)
T TIGR02319 64 EQAINAKNIVLAVDVPVIMDADAGYGNAM------SVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGK 137 (294)
T ss_pred HHHHHHHHHHhccCCCEEEECCCCCCCcH------HHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHH
Confidence 3444444566777888774 1 342211 234457778899999999999754 2688888888
Q ss_pred HHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEe
Q 022296 136 VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMID 215 (299)
Q Consensus 136 I~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiE 215 (299)
|+.+++.-= -++|-+ ...+ |. . . .. ..++. |+++++..+||||.|.+|
T Consensus 138 I~Aa~~A~~--~~d~~I---~ART----Da----~------~--------~~--g~dea---I~Ra~aY~eAGAD~ifi~ 185 (294)
T TIGR02319 138 IEAAVEARE--DEDFTI---IART----DA----R------E--------SF--GLDEA---IRRSREYVAAGADCIFLE 185 (294)
T ss_pred HHHHHHhcc--CCCeEE---EEEe----cc----c------c--------cC--CHHHH---HHHHHHHHHhCCCEEEec
Confidence 887776311 134444 1111 10 0 0 01 15677 999999999999999999
Q ss_pred ccccccCCCcccHHHHHHHHhccCC
Q 022296 216 SDDVCKHADSLRADIIAKVIGRLGL 240 (299)
Q Consensus 216 argi~d~~G~~r~d~i~~ii~~l~~ 240 (299)
+- ...+.+.++.+.++.
T Consensus 186 ~~--------~~~~ei~~~~~~~~~ 202 (294)
T TIGR02319 186 AM--------LDVEEMKRVRDEIDA 202 (294)
T ss_pred CC--------CCHHHHHHHHHhcCC
Confidence 62 245778888887764
No 126
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=90.57 E-value=2.7 Score=40.14 Aligned_cols=91 Identities=19% Similarity=0.308 Sum_probs=62.5
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 022296 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (299)
Q Consensus 92 fE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~ 171 (299)
.|.++..- .+..++-|.++|-|-+| .+....|+.+.+.|.-|.-.+|..-... +..+.|.
T Consensus 91 ~e~a~~na-------~rl~~eaGa~aVkiEgg------~~~~~~i~~l~~~gIpV~gHiGltPq~a-------~~~ggy~ 150 (263)
T TIGR00222 91 PEQALKNA-------ARVMQETGANAVKLEGG------EWLVETVQMLTERGVPVVGHLGLTPQSV-------NILGGYK 150 (263)
T ss_pred HHHHHHHH-------HHHHHHhCCeEEEEcCc------HhHHHHHHHHHHCCCCEEEecCCCceeE-------eecCCee
Confidence 56655442 46777889999999998 5567889999999999997777642211 0011111
Q ss_pred cCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEec
Q 022296 172 ARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDS 216 (299)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEa 216 (299)
... ..+-+.+++ |+++++-.+|||+.|.+|+
T Consensus 151 ~qg-----------rt~~~a~~~---i~~A~a~e~AGA~~ivlE~ 181 (263)
T TIGR00222 151 VQG-----------KDEEAAKKL---LEDALALEEAGAQLLVLEC 181 (263)
T ss_pred ecC-----------CCHHHHHHH---HHHHHHHHHcCCCEEEEcC
Confidence 110 011124667 9999999999999999998
No 127
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=90.47 E-value=1.8 Score=41.20 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=65.8
Q ss_pred HHHHHHcCCCEEEecCCcccC--------Chh----HHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCC
Q 022296 107 VEDCKQVGFDTIELNVGSLEI--------PEE----TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (299)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i--------~~~----~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~ 174 (299)
++.+.+.|.+.|-+....-+. +.+ .-.+.|+.+++.|++|..-+..-|... .+.
T Consensus 85 ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~-----~~~--------- 150 (287)
T PRK05692 85 LEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCP-----YEG--------- 150 (287)
T ss_pred HHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCC-----CCC---------
Confidence 477888999999998655332 222 345799999999998765555432211 110
Q ss_pred CCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 175 PRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
..+++.+ ++.+++..++||+.|- |.|..|-..+..+.++++.+
T Consensus 151 -------------~~~~~~~---~~~~~~~~~~G~d~i~-----l~DT~G~~~P~~v~~lv~~l 193 (287)
T PRK05692 151 -------------EVPPEAV---ADVAERLFALGCYEIS-----LGDTIGVGTPGQVRAVLEAV 193 (287)
T ss_pred -------------CCCHHHH---HHHHHHHHHcCCcEEE-----eccccCccCHHHHHHHHHHH
Confidence 0236778 8889999999999764 67777887777777766543
No 128
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=90.35 E-value=2 Score=42.36 Aligned_cols=150 Identities=8% Similarity=0.029 Sum_probs=88.3
Q ss_pred hHHHHHHHhhcccccEEEeeCcccc-cCCh-hHHHHHHHHHHh-CCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022296 41 NVLEDIFESMGQFVDGLKFSGGSHS-LMPK-PFIEEVVKRAHQ-HDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (299)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~-l~p~-~~l~eKI~l~~~-~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (299)
-.+-+.|..+| ||.+=.|+..+. ..|. ..-+|-++.+++ .++.+ + .| + .+ .+=++.+.+.|.+.
T Consensus 71 i~ia~~L~~~G--V~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~~-~-~l---~--~n----~~die~A~~~g~~~ 137 (347)
T PLN02746 71 VELIQRLVSSG--LPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGARF-P-VL---T--PN----LKGFEAAIAAGAKE 137 (347)
T ss_pred HHHHHHHHHcC--CCEEEECCCcCcccccccccHHHHHHHHHhccCCce-e-EE---c--CC----HHHHHHHHHcCcCE
Confidence 34556777888 888988865432 1110 011222333332 22211 1 11 1 12 34577788899999
Q ss_pred EEecCCc--------ccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccC
Q 022296 118 IELNVGS--------LEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLAS 185 (299)
Q Consensus 118 IEISdGt--------i~i~~~~r----~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~ 185 (299)
|-+.-.+ +..+.++= .++|+.+++.|++|.--+..-|+. .++
T Consensus 138 v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~-----p~~--------------------- 191 (347)
T PLN02746 138 VAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGC-----PIE--------------------- 191 (347)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecC-----Ccc---------------------
Confidence 9887433 23444443 369999999999874333332221 111
Q ss_pred CCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 186 NPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 186 ~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
...+++.+ ++.+++..++||+.|- |+|..|-..+..+.++++.+
T Consensus 192 -~r~~~~~l---~~~~~~~~~~Gad~I~-----l~DT~G~a~P~~v~~lv~~l 235 (347)
T PLN02746 192 -GPVPPSKV---AYVAKELYDMGCYEIS-----LGDTIGVGTPGTVVPMLEAV 235 (347)
T ss_pred -CCCCHHHH---HHHHHHHHHcCCCEEE-----ecCCcCCcCHHHHHHHHHHH
Confidence 01237788 8999999999999874 67788888877777666544
No 129
>PRK10812 putative DNAse; Provisional
Probab=90.34 E-value=9.2 Score=35.92 Aligned_cols=169 Identities=15% Similarity=0.179 Sum_probs=103.9
Q ss_pred CCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCC--hhHHHHHHHHHHhCCceecC---C-cHH---
Q 022296 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMP--KPFIEEVVKRAHQHDVYVST---G-DWA--- 92 (299)
Q Consensus 22 R~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p--~~~l~eKI~l~~~~gV~v~~---G-tlf--- 92 (299)
+..|+..++.+|. .+...+..++.+..| +.+..+.|-+...- +..+.+..+++.+..| +.- | .+.
T Consensus 30 ~~~gv~~~~~~~~----~~~~~~~~~~l~~~~-~~v~~~~GiHP~~~~~~~~~~~l~~~~~~~~v-vaIGEiGLD~~~~~ 103 (265)
T PRK10812 30 AARDVKFCLAVAT----TLPGYRHMRDLVGER-DNVVFSCGVHPLNQDEPYDVEELRRLAAEEGV-VAMGETGLDYYYTP 103 (265)
T ss_pred HHcCCCEEEEeCC----CHHHHHHHHHHHhhC-CCeEEEEEeCCCCCCChhHHHHHHHHhcCCCE-EEEEeeecCcCCCC
Confidence 4669999999999 566888888888887 35777888776442 3445555555543333 222 3 232
Q ss_pred -HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 022296 93 -EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (299)
Q Consensus 93 -E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~ 171 (299)
....++. -|+..++.++++|...+==+-+.. .+.++.+++.+.. +.-++-...+ |
T Consensus 104 ~~~~~Q~~--vf~~ql~lA~e~~~Pv~iH~r~a~-------~~~l~iL~~~~~~--~~~~v~H~fs--G----------- 159 (265)
T PRK10812 104 ETKVRQQE--SFRHHIQIGRELNKPVIVHTRDAR-------ADTLAILREEKVT--DCGGVLHCFT--E----------- 159 (265)
T ss_pred CCHHHHHH--HHHHHHHHHHHhCCCeEEEeeCch-------HHHHHHHHhhcCC--CCCEEEEeec--C-----------
Confidence 1223443 699999999999988775444322 2555555654432 1112311111 1
Q ss_pred cCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecCCch
Q 022296 172 ARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPR 251 (299)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP~k~ 251 (299)
+ .+.+++.++.|.+.=+- |... .-+.+.+.+++..+|+++|+.|...|.
T Consensus 160 ----------------~---------~~~a~~~~~~G~~is~~---g~~t---~~~~~~~~~~~~~ipldrlLlETD~P~ 208 (265)
T PRK10812 160 ----------------D---------RETAGKLLDLGFYISFS---GIVT---FRNAEQLRDAARYVPLDRLLVETDSPY 208 (265)
T ss_pred ----------------C---------HHHHHHHHHCCCEEEEC---eeee---cCccHHHHHHHHhCChhhEEEecCCCC
Confidence 1 44558889999766443 2211 114567888999999999999987653
No 130
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=90.34 E-value=5 Score=41.22 Aligned_cols=142 Identities=13% Similarity=0.091 Sum_probs=100.4
Q ss_pred ccEEEeeCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 022296 54 VDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (299)
Q Consensus 54 ID~lKfg~GTs~l~p~-----------~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISd 122 (299)
.+.+-+-..||-++-+ +.+.+-+++++++|..|..+ .|.+..-+++-+.+.++.+.+.|-+.|-+.|
T Consensus 90 ~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~--~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~D 167 (494)
T TIGR00973 90 KFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFS--CEDAGRTEIPFLARIVEAAINAGATTINIPD 167 (494)
T ss_pred CCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE--cCCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 5666666666665532 34557888999999877655 3444455566788888999999999999999
Q ss_pred CcccCChhHHHHHHHHHHHcCCcc--cceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHH
Q 022296 123 GSLEIPEETLLRYVRLVKSAGLKA--KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRR 200 (299)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~G~~v--~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 200 (299)
-.--+.+++-.++|+.++++ +.- ...+++.+. .| .... +..
T Consensus 168 TvG~~~P~~~~~~i~~l~~~-~~~~~~v~l~~H~H-------ND--------------------------~GlA---vAN 210 (494)
T TIGR00973 168 TVGYALPAEYGNLIKGLREN-VPNIDKAILSVHCH-------ND--------------------------LGLA---VAN 210 (494)
T ss_pred CCCCCCHHHHHHHHHHHHHh-hccccCceEEEEeC-------CC--------------------------CChH---HHH
Confidence 99999999999999999873 110 112444321 11 2333 566
Q ss_pred HHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHh
Q 022296 201 AERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 236 (299)
Q Consensus 201 ~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~ 236 (299)
+...++|||++ ||+- |+=+..||...+.+-..+.
T Consensus 211 alaAv~aGa~~--vd~tv~GlGERaGNa~le~vv~~L~ 246 (494)
T TIGR00973 211 SLAAVQNGARQ--VECTINGIGERAGNAALEEVVMALK 246 (494)
T ss_pred HHHHHHhCCCE--EEEEeecccccccCccHHHHHHHHH
Confidence 67899999995 5775 8888899988777665553
No 131
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=89.95 E-value=2 Score=41.00 Aligned_cols=97 Identities=16% Similarity=0.208 Sum_probs=58.5
Q ss_pred hhHHHHHHHhhccc-ccEEEee------------CcccccCChhHHHHHHHHHHhC-CceecC---CcHHHHHHHhCCch
Q 022296 40 HNVLEDIFESMGQF-VDGLKFS------------GGSHSLMPKPFIEEVVKRAHQH-DVYVST---GDWAEHLIRNGPSA 102 (299)
Q Consensus 40 ~~~l~DlLe~ag~y-ID~lKfg------------~GTs~l~p~~~l~eKI~l~~~~-gV~v~~---GtlfE~a~~qg~~~ 102 (299)
+..+.+..+.+-++ .|.+=+- .|+..+-.++.+.+.++-.++. ++++.. ++|-+ +...
T Consensus 74 ~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~-----~~~~ 148 (319)
T TIGR00737 74 PDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD-----AHIN 148 (319)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC-----Ccch
Confidence 33444444443333 6666553 3444555677888888877653 554432 34532 2124
Q ss_pred HHHHHHHHHHcCCCEEEecCCccc--CChhHHHHHHHHHHH
Q 022296 103 FKEYVEDCKQVGFDTIELNVGSLE--IPEETLLRYVRLVKS 141 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~--i~~~~r~~lI~~~~~ 141 (299)
..++.+.+.+.|.+.|-|+..+.. .+..-..++++.+++
T Consensus 149 ~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~ 189 (319)
T TIGR00737 149 AVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQ 189 (319)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHH
Confidence 678899999999999999765432 222223578888877
No 132
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=89.93 E-value=2.5 Score=38.40 Aligned_cols=102 Identities=21% Similarity=0.135 Sum_probs=63.6
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceec--------------CCc
Q 022296 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--------------TGD 90 (299)
Q Consensus 25 GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~--------------~Gt 90 (299)
++..+.+=|+ + ....++++++. | +|.+ ..|+..+.+++.+++..+.+++..|.++ +=+
T Consensus 71 ~~pv~~~GGI--~-s~~d~~~~l~~-G--~~~v--~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~ 142 (243)
T cd04731 71 FIPLTVGGGI--R-SLEDARRLLRA-G--ADKV--SINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHG 142 (243)
T ss_pred CCCEEEeCCC--C-CHHHHHHHHHc-C--CceE--EECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcC
Confidence 3445555555 2 45566666663 2 5554 5678888888888888887765445433 212
Q ss_pred HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc----ccCChhHHHHHHHHHHH
Q 022296 91 WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS----LEIPEETLLRYVRLVKS 141 (299)
Q Consensus 91 lfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt----i~i~~~~r~~lI~~~~~ 141 (299)
|.+. ......++.+.+.+.|++.|.+++=+ ..-. ..++++++++
T Consensus 143 ~~~~----~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~---~~~~i~~i~~ 190 (243)
T cd04731 143 GRKP----TGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGY---DLELIRAVSS 190 (243)
T ss_pred Ccee----cCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCC---CHHHHHHHHh
Confidence 4332 12356788899999999999996522 2222 2466777766
No 133
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=89.93 E-value=3.7 Score=38.60 Aligned_cols=112 Identities=17% Similarity=0.165 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHc-CCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCc
Q 022296 102 AFKEYVEDCKQV-GFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (299)
Q Consensus 102 ~~~~yl~~~k~l-GF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~ 177 (299)
.+.++++++.+. |.+.|=+.-.| ..|+.++|.++++.+.+. +...+.+-.+
T Consensus 22 ~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~---~~~~~~viag---------------------- 76 (288)
T cd00954 22 VLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEA---AKGKVTLIAH---------------------- 76 (288)
T ss_pred HHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHH---hCCCCeEEec----------------------
Confidence 678889999888 99999776543 589999999999998883 1111111100
Q ss_pred cchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc-CCCceEEecCC
Q 022296 178 TDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL-GLEKTMFEATN 249 (299)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l-~~eklifEAP~ 249 (299)
+...+.++. ++.++..-++||+.|++=.--.+..+-+--.+-...|++.. ++.=++.-.|.
T Consensus 77 --------v~~~~~~~a---i~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~ 138 (288)
T cd00954 77 --------VGSLNLKES---QELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIPA 138 (288)
T ss_pred --------cCCCCHHHH---HHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCcc
Confidence 011125566 99999999999999997554222211111122334455556 45666666663
No 134
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=89.84 E-value=1 Score=42.48 Aligned_cols=105 Identities=13% Similarity=0.205 Sum_probs=70.9
Q ss_pred chhHHHHHHH-hhcccccEEEeeCccc-ccCChhHHHH-----------------HHHHHH--hCCceecCCcHHHHHHH
Q 022296 39 SHNVLEDIFE-SMGQFVDGLKFSGGSH-SLMPKPFIEE-----------------VVKRAH--QHDVYVSTGDWAEHLIR 97 (299)
Q Consensus 39 g~~~l~DlLe-~ag~yID~lKfg~GTs-~l~p~~~l~e-----------------KI~l~~--~~gV~v~~GtlfE~a~~ 97 (299)
.++.+.+++. ..-.-+|++=+|+=.| .+.+-..+++ .+.-.+ ..++++..=|++..++.
T Consensus 24 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~ 103 (258)
T PRK13111 24 DLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQ 103 (258)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhh
Confidence 4556666444 4455699999997542 1111112222 222222 23554443367777777
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 022296 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (299)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (299)
.| +++|++.|++.|++.+=|. +||.++..++++.+++.|+...+=+
T Consensus 104 ~G---~e~f~~~~~~aGvdGviip----DLp~ee~~~~~~~~~~~gl~~I~lv 149 (258)
T PRK13111 104 YG---VERFAADAAEAGVDGLIIP----DLPPEEAEELRAAAKKHGLDLIFLV 149 (258)
T ss_pred cC---HHHHHHHHHHcCCcEEEEC----CCCHHHHHHHHHHHHHcCCcEEEEe
Confidence 75 9999999999999999996 6899999999999999999877533
No 135
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=89.71 E-value=2.8 Score=37.64 Aligned_cols=89 Identities=17% Similarity=0.209 Sum_probs=58.1
Q ss_pred HHHHHHHHcCCCEEEecCCcccCCh-hHHHHHHHHHHHcC-CcccceeeeecCCCCCCCcccccccccccCCCCccchhc
Q 022296 105 EYVEDCKQVGFDTIELNVGSLEIPE-ETLLRYVRLVKSAG-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLF 182 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~-~~r~~lI~~~~~~G-~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~ 182 (299)
+.++.|.+.|-+.|.+.......|. ++-.++++.+++.| +.+.+ ++ .
T Consensus 83 ~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv--~v---~-------------------------- 131 (219)
T cd04729 83 EEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMA--DI---S-------------------------- 131 (219)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEE--EC---C--------------------------
Confidence 4679999999999988655555555 36678999999987 33222 11 0
Q ss_pred ccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCC---CcccHHHHHHHHhcc
Q 022296 183 LASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHA---DSLRADIIAKVIGRL 238 (299)
Q Consensus 183 ~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~---G~~r~d~i~~ii~~l 238 (299)
+ .+.+++..++|+++|.+...|..... .....+.+.++.+.+
T Consensus 132 -----t---------~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~ 176 (219)
T cd04729 132 -----T---------LEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL 176 (219)
T ss_pred -----C---------HHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc
Confidence 0 22347778899999998877654432 122345666666554
No 136
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=89.66 E-value=7.5 Score=37.04 Aligned_cols=155 Identities=12% Similarity=0.031 Sum_probs=97.8
Q ss_pred hhHHHHHHHhhcccccEEEeeCcccccCChh-----------HHHHHHHHHHhCCceecCCcHHHHHHHhCCc-----hH
Q 022296 40 HNVLEDIFESMGQFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPS-----AF 103 (299)
Q Consensus 40 ~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~-----~~ 103 (299)
.+.++..+++ =+|.+-+-..+|-.+.+. .+++-+++++++|+.|..+- |-+..-+++ -+
T Consensus 77 ~~die~A~~~---g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~--ed~~r~d~~~~v~~~~ 151 (279)
T cd07947 77 KEDLKLVKEM---GLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL--EDITRADIYGFVLPFV 151 (279)
T ss_pred HHHHHHHHHc---CcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE--EcccCCCcccchHHHH
Confidence 3455555554 345666666666554432 35678889999998665431 333333221 45
Q ss_pred HHHHHHHHHcCCC-EEEecCCcccCCh-------hHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccccCC
Q 022296 104 KEYVEDCKQVGFD-TIELNVGSLEIPE-------ETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (299)
Q Consensus 104 ~~yl~~~k~lGF~-~IEISdGti~i~~-------~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~ 174 (299)
+++++.+.+.|.+ .|=+.|-.--..+ ++-.++++.+++. ++ .-.+++..+.. |
T Consensus 152 ~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~-p~~~l~~H~Hn-------~---------- 213 (279)
T cd07947 152 NKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGV-PSENLEWHGHN-------D---------- 213 (279)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCC-CCceEEEEecC-------C----------
Confidence 6667777779999 6888887765544 4556888888773 21 11134553211 1
Q ss_pred CCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhcc
Q 022296 175 PRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~l 238 (299)
.... +..+-..++|||++ +++- |+=+..||.-++.+-..+..+
T Consensus 214 ----------------~Gla---~AN~laA~~aG~~~--vd~sv~GlGe~aGN~~tE~lv~~l~~~ 258 (279)
T cd07947 214 ----------------FYKA---VANAVAAWLYGASW--VNCTLLGIGERTGNCPLEAMVIEYAQL 258 (279)
T ss_pred ----------------CChH---HHHHHHHHHhCCCE--EEEecccccccccchhHHHHHHHHHHh
Confidence 2333 66778899999997 5664 888999999988877666654
No 137
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=89.58 E-value=2.7 Score=39.34 Aligned_cols=98 Identities=14% Similarity=0.151 Sum_probs=62.6
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCC
Q 022296 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASN 186 (299)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
.+..-+.|.++|-|-|+. +..+.|+.+++.|+.|.-..+.... +-+..+.+..+ +..+
T Consensus 95 ~~~l~~aGa~gv~iED~~------~~~~~i~ai~~a~i~ViaRtd~~pq-~~~~~gg~~~~--------~~~~------- 152 (240)
T cd06556 95 AKTFMRAGAAGVKIEGGE------WHIETLQMLTAAAVPVIAHTGLTPQ-SVNTSGGDEGQ--------YRGD------- 152 (240)
T ss_pred HHHHHHcCCcEEEEcCcH------HHHHHHHHHHHcCCeEEEEeCCchh-hhhccCCceee--------ccCH-------
Confidence 344445999999999984 4566788889988776655554110 00000111000 0000
Q ss_pred CccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCC
Q 022296 187 PEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL 240 (299)
Q Consensus 187 ~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~ 240 (299)
-+.+++ |++++...+||||.|.+|+- ..+++.+|.+.++.
T Consensus 153 --~~~~~a---i~Ra~ay~~AGAd~i~~e~~---------~~e~~~~i~~~~~~ 192 (240)
T cd06556 153 --EAGEQL---IADALAYAPAGADLIVMECV---------PVELAKQITEALAI 192 (240)
T ss_pred --HHHHHH---HHHHHHHHHcCCCEEEEcCC---------CHHHHHHHHHhCCC
Confidence 125677 99999999999999999963 46778888877663
No 138
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=89.54 E-value=4 Score=35.35 Aligned_cols=98 Identities=17% Similarity=0.374 Sum_probs=68.3
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcC-CCE
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVG-FDT 117 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lG-F~~ 117 (299)
.+.++.++++.+..++..+-|.+|-..+.|+ +.+.++.+++.|+.++.-| .| ..+++++...+.| .+.
T Consensus 48 ~~~~i~~~i~~~~~~~~~i~~sGGEPll~~~--l~~li~~~~~~g~~v~i~T-------Ng--~~~~~l~~l~~~g~~~~ 116 (191)
T TIGR02495 48 EVEFLLEFLRSRQGLIDGVVITGGEPTLQAG--LPDFLRKVRELGFEVKLDT-------NG--SNPRVLEELLEEGLVDY 116 (191)
T ss_pred CHHHHHHHHHHhcCCCCeEEEECCcccCcHh--HHHHHHHHHHCCCeEEEEe-------CC--CCHHHHHHHHhcCCCcE
Confidence 5668888988888889999999999988773 8999999999998554311 11 1234556666678 488
Q ss_pred EEecCCcc-c----C-----Ch-hHHHHHHHHHHHcCCccc
Q 022296 118 IELNVGSL-E----I-----PE-ETLLRYVRLVKSAGLKAK 147 (299)
Q Consensus 118 IEISdGti-~----i-----~~-~~r~~lI~~~~~~G~~v~ 147 (299)
|-+|-... + + .. +.-.+.|+.+++.|+.+.
T Consensus 117 v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~~~ 157 (191)
T TIGR02495 117 VAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIPFE 157 (191)
T ss_pred EEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCCEE
Confidence 87754421 1 1 11 245678888989887643
No 139
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=89.42 E-value=4.6 Score=38.05 Aligned_cols=136 Identities=16% Similarity=0.184 Sum_probs=79.9
Q ss_pred cccccEEEeeCcccccCChhHHHHHHHHHHhCCc--eecCCc---HHHHHHHhCCchHHHHHHHHHHcCCCEEEecC-Cc
Q 022296 51 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTGD---WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV-GS 124 (299)
Q Consensus 51 g~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV--~v~~Gt---lfE~a~~qg~~~~~~yl~~~k~lGF~~IEISd-Gt 124 (299)
.+++|++|+|-++..=++ .|+ .+-+.|. .+++|. +-| ++.-++.+++-|-+-|=+-. |+
T Consensus 106 ~~~~d~lkI~s~~~~n~~--LL~----~~a~~gkPVilk~G~~~t~~e---------~~~Ave~i~~~Gn~~i~l~~rG~ 170 (260)
T TIGR01361 106 AEYADILQIGARNMQNFE--LLK----EVGKQGKPVLLKRGMGNTIEE---------WLYAAEYILSSGNGNVILCERGI 170 (260)
T ss_pred HhhCCEEEECcccccCHH--HHH----HHhcCCCcEEEeCCCCCCHHH---------HHHHHHHHHHcCCCcEEEEECCC
Confidence 377999999977544333 333 3334565 455673 322 22335556677775444422 45
Q ss_pred ccC-C---hhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHH
Q 022296 125 LEI-P---EETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSR 199 (299)
Q Consensus 125 i~i-~---~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 199 (299)
-+- | .+--++.|..+++. ++. +|.- +.... ++ -+.. ..
T Consensus 171 s~y~~~~~~~~dl~~i~~lk~~~~~p----V~~d-s~Hs~---G~--------------------------r~~~---~~ 213 (260)
T TIGR01361 171 RTFEKATRNTLDLSAVPVLKKETHLP----IIVD-PSHAA---GR--------------------------RDLV---IP 213 (260)
T ss_pred CCCCCCCcCCcCHHHHHHHHHhhCCC----EEEc-CCCCC---Cc--------------------------cchH---HH
Confidence 333 2 23445677777763 322 4441 11111 11 1222 44
Q ss_pred HHHHHHHccCcEEEEecc-----ccccCCCcccHHHHHHHHhcc
Q 022296 200 RAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 200 ~~~~dLeAGA~~VIiEar-----gi~d~~G~~r~d~i~~ii~~l 238 (299)
.+...+.+||+-+|||-- .+.|..-.+..+.+.++++.+
T Consensus 214 ~~~aAva~Ga~gl~iE~H~t~d~a~~D~~~sl~p~~l~~lv~~i 257 (260)
T TIGR01361 214 LAKAAIAAGADGLMIEVHPDPEKALSDSKQQLTPEEFKRLVKEL 257 (260)
T ss_pred HHHHHHHcCCCEEEEEeCCCccccCCcchhcCCHHHHHHHHHHH
Confidence 567799999999999983 678888999999999998653
No 140
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=89.34 E-value=4.9 Score=39.51 Aligned_cols=134 Identities=19% Similarity=0.285 Sum_probs=98.6
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022296 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (299)
Q Consensus 39 g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (299)
.+.++..+...+..+ |+=+|+.+|=-.|=+ .|.+.|+..++++ +.|++++.|.-.+..+.+.+|+.|++.
T Consensus 44 s~eei~~~~~~~~~~Gv~kvRlTGGEPllR~--dl~eIi~~l~~~~-------~~~islTTNG~~L~~~a~~Lk~AGl~r 114 (322)
T COG2896 44 SLEEIRRLVRAFAELGVEKVRLTGGEPLLRK--DLDEIIARLARLG-------IRDLSLTTNGVLLARRAADLKEAGLDR 114 (322)
T ss_pred CHHHHHHHHHHHHHcCcceEEEeCCCchhhc--CHHHHHHHHhhcc-------cceEEEecchhhHHHHHHHHHHcCCcE
Confidence 567888888888888 889999999998855 8999999999983 344555544345778889999999999
Q ss_pred EEecCCccc------CC----hhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCcccccccccccCCCCccchhcccCC
Q 022296 118 IELNVGSLE------IP----EETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASN 186 (299)
Q Consensus 118 IEISdGti~------i~----~~~r~~lI~~~~~~G~~-v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
|-||-.|++ |. .+.=.+=|+.|.+.||. ||=..-+.-+ +
T Consensus 115 VNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kg---v--------------------------- 164 (322)
T COG2896 115 VNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKG---V--------------------------- 164 (322)
T ss_pred EEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecC---C---------------------------
Confidence 999988763 22 13334567899999997 7766666321 1
Q ss_pred CccchhhhhhhHHHHHHHHHccCcEEEEecc
Q 022296 187 PEIEVGVGINKSRRAERCLEAGADMIMIDSD 217 (299)
Q Consensus 187 ~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar 217 (299)
..+++ ...++-.-+-|+..=+||=.
T Consensus 165 ---Nd~ei---~~l~e~~~~~~~~lrfIE~m 189 (322)
T COG2896 165 ---NDDEI---EDLLEFAKERGAQLRFIELM 189 (322)
T ss_pred ---CHHHH---HHHHHHHhhcCCceEEEEEe
Confidence 12333 44467777889999999976
No 141
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=89.14 E-value=2.9 Score=42.95 Aligned_cols=168 Identities=17% Similarity=0.184 Sum_probs=101.2
Q ss_pred eEecCCCCCCcchhHHHHHHHhhccc----ccEEEeeCccc-c-------cCChhHHHHHHHHHHhCCceecC-C-cHHH
Q 022296 28 EMRSPHYTLSSSHNVLEDIFESMGQF----VDGLKFSGGSH-S-------LMPKPFIEEVVKRAHQHDVYVST-G-DWAE 93 (299)
Q Consensus 28 ~V~DkGl~~~~g~~~l~DlLe~ag~y----ID~lKfg~GTs-~-------l~p~~~l~eKI~l~~~~gV~v~~-G-tlfE 93 (299)
-+||=..|+....=.++|++..+..+ ++.+=+++|++ - -.|.+.|+..-+..++--+..-. | .++
T Consensus 19 TlRDg~QSl~atr~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~n~v- 97 (468)
T PRK12581 19 VLRDGHQSLMATRLSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNLL- 97 (468)
T ss_pred CccchhhhccccCCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeecccccc-
Confidence 45777777441222456666554322 23444445542 2 24545454444444332221111 3 111
Q ss_pred HHHHhCC-chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 022296 94 HLIRNGP-SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 172 (299)
Q Consensus 94 ~a~~qg~-~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~ 172 (299)
.+..-| +-++.|++.+.+.|+|.+-|-|..-+++. -...|+.+++.|..+..-+... .+
T Consensus 98 -gy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n--~~~ai~~ak~~G~~~~~~i~yt--~s--------------- 157 (468)
T PRK12581 98 -GYRHYADDIVDKFISLSAQNGIDVFRIFDALNDPRN--IQQALRAVKKTGKEAQLCIAYT--TS--------------- 157 (468)
T ss_pred -CccCCcchHHHHHHHHHHHCCCCEEEEcccCCCHHH--HHHHHHHHHHcCCEEEEEEEEE--eC---------------
Confidence 111111 36889999999999999999997775544 4569999999998765323321 11
Q ss_pred CCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 173 RAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
| + -+++-+ ++.++.-.++||+.|- |.|..|-..+..+.++++.+
T Consensus 158 p-----~---------~t~~y~---~~~a~~l~~~Gad~I~-----IkDtaG~l~P~~v~~Lv~al 201 (468)
T PRK12581 158 P-----V---------HTLNYY---LSLVKELVEMGADSIC-----IKDMAGILTPKAAKELVSGI 201 (468)
T ss_pred C-----c---------CcHHHH---HHHHHHHHHcCCCEEE-----ECCCCCCcCHHHHHHHHHHH
Confidence 1 0 125667 8888999999999775 67888888888888887665
No 142
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=89.12 E-value=3 Score=43.85 Aligned_cols=96 Identities=18% Similarity=0.203 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
-++++++.+.+.|+|.|-|.+..-++ +.-.+.|+.++++|+.|. +.+-... +| +
T Consensus 92 vv~~~v~~a~~~Gvd~irif~~lnd~--~n~~~~i~~ak~~G~~v~--~~i~~t~---------------~p--~----- 145 (582)
T TIGR01108 92 VVERFVKKAVENGMDVFRIFDALNDP--RNLQAAIQAAKKHGAHAQ--GTISYTT---------------SP--V----- 145 (582)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcH--HHHHHHHHHHHHcCCEEE--EEEEecc---------------CC--C-----
Confidence 48889999999999999999777665 456678999999998653 3431110 11 1
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
.+++.+ ++.+++..++||+.| .|+|..|-.....+.++++.+
T Consensus 146 -------~~~~~~---~~~~~~~~~~Gad~I-----~i~Dt~G~~~P~~v~~lv~~l 187 (582)
T TIGR01108 146 -------HTLETY---LDLAEELLEMGVDSI-----CIKDMAGILTPKAAYELVSAL 187 (582)
T ss_pred -------CCHHHH---HHHHHHHHHcCCCEE-----EECCCCCCcCHHHHHHHHHHH
Confidence 126777 888899999999976 378899999988888888655
No 143
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=89.07 E-value=6.6 Score=35.81 Aligned_cols=141 Identities=16% Similarity=0.255 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc------cCChhHHHHHHHHHHHcCCcccceeeee-cCCCCCCCcccccccccccCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL------EIPEETLLRYVRLVKSAGLKAKPKFAVM-FNKSDIPSDRDRAFGAYVARA 174 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti------~i~~~~r~~lI~~~~~~G~~v~~E~gvK-~~~sevg~~~d~~~~~~~~~~ 174 (299)
.+.+.++++.++||+.||+.-+.. .++.+...++.+.+++.|+++.. .+.- .+.+ + .| |.
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~-h~p~~~nl~---s-~d--------~~ 77 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSV-HAPYLINLA---S-PD--------KE 77 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEE-ECCceecCC---C-CC--------HH
Confidence 467889999999999999986655 46778888888889999987431 1110 0000 0 01 00
Q ss_pred CCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHH-------HHHHHHhc-cCCCceEEe
Q 022296 175 PRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRAD-------IIAKVIGR-LGLEKTMFE 246 (299)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d-------~i~~ii~~-l~~eklifE 246 (299)
.+ ..+++.+ .+.++.+-+.||..|.+.+ |-+.. .-+++ .+.++++. -| -+|.+|
T Consensus 78 ~r-----------~~~~~~l---~~~i~~A~~lGa~~vv~h~-g~~~~--~~~e~~~~~~~~~l~~l~~~~~g-v~l~lE 139 (273)
T smart00518 78 KV-----------EKSIERL---IDEIKRCEELGIKALVFHP-GSYLK--QSKEEALNRIIESLNEVIDETKG-VVILLE 139 (273)
T ss_pred HH-----------HHHHHHH---HHHHHHHHHcCCCEEEEcc-ccccC--CCHHHHHHHHHHHHHHHHhccCC-cEEEEe
Confidence 01 0124445 4445555567999998855 22211 11223 23334331 12 246777
Q ss_pred cC---------CchhHHHHHHHhC--CCcccccCCCCc
Q 022296 247 AT---------NPRTSEWFIRRYG--PKVNLFVDHSQV 273 (299)
Q Consensus 247 AP---------~k~qQ~~fI~~fG--~~VNLgI~~~eV 273 (299)
.- ...+-..+++..+ |+|.+.+|..+.
T Consensus 140 n~~~~~~~~~~~~~~~~~ll~~v~~~~~~g~~lD~gH~ 177 (273)
T smart00518 140 TTAGKGSQIGSTFEDLKEIIDLIKELDRIGVCIDTCHI 177 (273)
T ss_pred ccCCCCCccCCCHHHHHHHHHhcCCCCCeEEEEEccch
Confidence 51 3345778888887 467665555554
No 144
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=89.06 E-value=1.8 Score=41.77 Aligned_cols=118 Identities=25% Similarity=0.407 Sum_probs=82.6
Q ss_pred HHHHHHHHHhCCceec------CCc-HHH-HHHHhCCchHHHHHHHHHHcCC-CEEEecCCcccCChhHHHHHHHHHHHc
Q 022296 72 IEEVVKRAHQHDVYVS------TGD-WAE-HLIRNGPSAFKEYVEDCKQVGF-DTIELNVGSLEIPEETLLRYVRLVKSA 142 (299)
Q Consensus 72 l~eKI~l~~~~gV~v~------~Gt-lfE-~a~~qg~~~~~~yl~~~k~lGF-~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (299)
.++-++.+++.++.+. ||. +|| +|++-|.. .-+++|. |+|=|.|.-+.+-- ...+.|+++++.
T Consensus 113 T~~~V~~~~~~~~~i~~TRKT~PglR~leKyAV~~GGG-------~nHR~gLsDavliKDNHia~~g-~i~~Av~~aR~~ 184 (280)
T COG0157 113 TARMVEALRGTNVRIADTRKTTPGLRLLEKYAVRAGGG-------DNHRFGLSDAVLIKDNHIAAAG-SITEAVRRARAA 184 (280)
T ss_pred HHHHHHHhhccCcEEEeccCCCccHHHHHHHHHHhcCC-------ccccCCCcceEEehhhHHHHhc-cHHHHHHHHHHh
Confidence 3567788888887543 573 666 44444411 1244554 68889998888777 556899999885
Q ss_pred -CCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecccccc
Q 022296 143 -GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCK 221 (299)
Q Consensus 143 -G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d 221 (299)
++.++=||-+. . .+++++.++||||.||.
T Consensus 185 ~~~~~kIEVEve----------------------------------s---------le~~~eAl~agaDiImL------- 214 (280)
T COG0157 185 APFTKKIEVEVE----------------------------------S---------LEEAEEALEAGADIIML------- 214 (280)
T ss_pred CCCCceEEEEcC----------------------------------C---------HHHHHHHHHcCCCEEEe-------
Confidence 55544444440 1 56669999999999999
Q ss_pred CCCcccHHHHHHHHhccC-CCceEEecCC
Q 022296 222 HADSLRADIIAKVIGRLG-LEKTMFEATN 249 (299)
Q Consensus 222 ~~G~~r~d~i~~ii~~l~-~eklifEAP~ 249 (299)
.|+..+.+.+.++.++ ..+++.||.-
T Consensus 215 --DNm~~e~~~~av~~l~~~~~~~lEaSG 241 (280)
T COG0157 215 --DNMSPEELKEAVKLLGLAGRALLEASG 241 (280)
T ss_pred --cCCCHHHHHHHHHHhccCCceEEEEeC
Confidence 4778888888887766 5678999873
No 145
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=89.02 E-value=3.1 Score=41.27 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh---h-HHHHHHHHHHHcCCc
Q 022296 70 PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE---E-TLLRYVRLVKSAGLK 145 (299)
Q Consensus 70 ~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~---~-~r~~lI~~~~~~G~~ 145 (299)
+.+.+.|+-.++++|.+..+. ++....++.+.+.+.|.|.|.|+-.|.+-.+ . ++..+++..++.+..
T Consensus 118 ~l~~~iv~~~~~~~V~v~vr~--------~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ip 189 (368)
T PRK08649 118 ELITERIAEIRDAGVIVAVSL--------SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVP 189 (368)
T ss_pred HHHHHHHHHHHhCeEEEEEec--------CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCC
Confidence 445555566666666554432 3346789999999999999999766554221 1 456677776765433
No 146
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=88.99 E-value=12 Score=36.81 Aligned_cols=101 Identities=17% Similarity=0.261 Sum_probs=69.6
Q ss_pred chhHHHHHHHhhc-ccccEEEeeCcccccCChhHHHHHHHHHHhC-Cce---ecC-CcHHHHHHHhCCchHHHHHHHHHH
Q 022296 39 SHNVLEDIFESMG-QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVY---VST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (299)
Q Consensus 39 g~~~l~DlLe~ag-~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~---v~~-GtlfE~a~~qg~~~~~~yl~~~k~ 112 (299)
...++.++++.+. .-+..+.|.+|--.+.+ .+.+.++.+++. |+. +.| |++ +++.++.+++
T Consensus 91 s~eei~~~i~~~~~~Gv~~I~~tGGEPllr~--dl~eli~~l~~~~gi~~i~itTNG~l-----------L~~~~~~L~~ 157 (373)
T PLN02951 91 SQDEIVRLAGLFVAAGVDKIRLTGGEPTLRK--DIEDICLQLSSLKGLKTLAMTTNGIT-----------LSRKLPRLKE 157 (373)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCcchh--hHHHHHHHHHhcCCCceEEEeeCcch-----------HHHHHHHHHh
Confidence 4556766665432 34788999999988776 588999999986 653 344 544 2334567888
Q ss_pred cCCCEEEecCCccc----------CChhHHHHHHHHHHHcCCc-ccceeee
Q 022296 113 VGFDTIELNVGSLE----------IPEETLLRYVRLVKSAGLK-AKPKFAV 152 (299)
Q Consensus 113 lGF~~IEISdGti~----------i~~~~r~~lI~~~~~~G~~-v~~E~gv 152 (299)
.|++.|-||=.+++ -+.+..++.|+.+++.|+. |+-.+.+
T Consensus 158 aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv 208 (373)
T PLN02951 158 AGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVV 208 (373)
T ss_pred CCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99999999966541 1236677888999999984 4444443
No 147
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=88.99 E-value=3.5 Score=42.30 Aligned_cols=96 Identities=17% Similarity=0.205 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
-++.|++.+.+.|++.|-|.+..-++ +.-.+.|+.+++.|+.|. ..+-... + | +
T Consensus 96 vv~~fv~~A~~~Gvd~irif~~lnd~--~n~~~~i~~ak~~G~~v~--~~i~~t~---~------------p--~----- 149 (467)
T PRK14041 96 VVELFVKKVAEYGLDIIRIFDALNDI--RNLEKSIEVAKKHGAHVQ--GAISYTV---S------------P--V----- 149 (467)
T ss_pred hhHHHHHHHHHCCcCEEEEEEeCCHH--HHHHHHHHHHHHCCCEEE--EEEEecc---C------------C--C-----
Confidence 68899999999999999999877775 345568999999998654 3331100 1 1 0
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
.+++.+ ++.+++..++||+.|- |.|..|-.....+.+++..+
T Consensus 150 -------~t~e~~---~~~a~~l~~~Gad~I~-----i~Dt~G~l~P~~v~~Lv~~l 191 (467)
T PRK14041 150 -------HTLEYY---LEFARELVDMGVDSIC-----IKDMAGLLTPKRAYELVKAL 191 (467)
T ss_pred -------CCHHHH---HHHHHHHHHcCCCEEE-----ECCccCCcCHHHHHHHHHHH
Confidence 125677 8888999999999764 67888888887777777554
No 148
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=88.85 E-value=3.1 Score=43.21 Aligned_cols=105 Identities=24% Similarity=0.332 Sum_probs=72.1
Q ss_pred HHHhhcccccEE--EeeCcccccCChhHHHHHHHHHHhCC-ceecC--C-cHHHHHHH---------------hCCch-H
Q 022296 46 IFESMGQFVDGL--KFSGGSHSLMPKPFIEEVVKRAHQHD-VYVST--G-DWAEHLIR---------------NGPSA-F 103 (299)
Q Consensus 46 lLe~ag~yID~l--Kfg~GTs~l~p~~~l~eKI~l~~~~g-V~v~~--G-tlfE~a~~---------------qg~~~-~ 103 (299)
-|+..|+.+|=+ =|.+||+.-+|.+..+.-++.++++= -+... + .-+|-+.. -.|+. -
T Consensus 126 ~l~~~g~~~~kvE~i~~GGTft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~ 205 (522)
T TIGR01211 126 QLEQIGHPVDKVELIIMGGTFPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCR 205 (522)
T ss_pred HHHHhCCCCceEEEEEECCCcccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCC
Confidence 355578887743 48999999999999999999998861 11111 1 00222211 22333 4
Q ss_pred HHHHHHHHHcCCCEEEecCCcc----------cCChhHHHHHHHHHHHcCCccccee
Q 022296 104 KEYVEDCKQVGFDTIELNVGSL----------EIPEETLLRYVRLVKSAGLKAKPKF 150 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti----------~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (299)
++.++.++++|++.||+--=|. .-+.++-.+.++.+++.||++...+
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~L 262 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHI 262 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 7899999999999999866555 3455666788999999999755443
No 149
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=88.83 E-value=3.4 Score=40.34 Aligned_cols=91 Identities=13% Similarity=0.132 Sum_probs=68.4
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhccc
Q 022296 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLA 184 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~ 184 (299)
+-++.+.+.|.+.|-|....-+. +.-.+.|+.+++.|++|. +..... +
T Consensus 92 ~dl~~a~~~gvd~iri~~~~~e~--~~~~~~i~~ak~~G~~v~--~~l~~a----~------------------------ 139 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHCTEA--DVSEQHIGLARELGMDTV--GFLMMS----H------------------------ 139 (337)
T ss_pred HHHHHHHHcCCCEEEEEEecchH--HHHHHHHHHHHHCCCeEE--EEEEec----c------------------------
Confidence 34788999999999998755544 345789999999998753 333211 0
Q ss_pred CCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 185 SNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 185 ~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
..+++.+ +++++...++||+.| .|.|..|...++.+.+++..+
T Consensus 140 ---~~~~e~l---~~~a~~~~~~Ga~~i-----~i~DT~G~~~P~~v~~~v~~l 182 (337)
T PRK08195 140 ---MAPPEKL---AEQAKLMESYGAQCV-----YVVDSAGALLPEDVRDRVRAL 182 (337)
T ss_pred ---CCCHHHH---HHHHHHHHhCCCCEE-----EeCCCCCCCCHHHHHHHHHHH
Confidence 0236788 999999999999976 478999999999998888644
No 150
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=88.78 E-value=3.4 Score=36.94 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=18.1
Q ss_pred HHHHHHHHHccCcEEEEeccccccCC
Q 022296 198 SRRAERCLEAGADMIMIDSDDVCKHA 223 (299)
Q Consensus 198 i~~~~~dLeAGA~~VIiEargi~d~~ 223 (299)
.+.+++.+++||+-|+|=+ .|++..
T Consensus 184 ~edi~~~~~~Ga~gvivGs-ai~~~~ 208 (217)
T cd00331 184 PEDVKRLAEAGADAVLIGE-SLMRAP 208 (217)
T ss_pred HHHHHHHHHcCCCEEEECH-HHcCCC
Confidence 3455888999999999844 366544
No 151
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=88.75 E-value=3.8 Score=38.07 Aligned_cols=91 Identities=14% Similarity=0.157 Sum_probs=66.1
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhccc
Q 022296 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLA 184 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~ 184 (299)
+.++.+.+.|.+.|-|..-.-++ +.-.+.|+.+++.|+.|.. ... +.+
T Consensus 89 ~~i~~a~~~g~~~iri~~~~s~~--~~~~~~i~~ak~~G~~v~~--~~~----~~~------------------------ 136 (263)
T cd07943 89 DDLKMAADLGVDVVRVATHCTEA--DVSEQHIGAARKLGMDVVG--FLM----MSH------------------------ 136 (263)
T ss_pred HHHHHHHHcCCCEEEEEechhhH--HHHHHHHHHHHHCCCeEEE--EEE----ecc------------------------
Confidence 55788899999999986543333 3556799999999986433 331 100
Q ss_pred CCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 185 SNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 185 ~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
..+++.+ ++.+++..++||+.|- |.|..|...++.+.++++.+
T Consensus 137 ---~~~~~~~---~~~~~~~~~~G~d~i~-----l~DT~G~~~P~~v~~lv~~l 179 (263)
T cd07943 137 ---MASPEEL---AEQAKLMESYGADCVY-----VTDSAGAMLPDDVRERVRAL 179 (263)
T ss_pred ---CCCHHHH---HHHHHHHHHcCCCEEE-----EcCCCCCcCHHHHHHHHHHH
Confidence 0226777 8888889999999764 78899999999988888654
No 152
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=88.74 E-value=3.5 Score=36.89 Aligned_cols=81 Identities=16% Similarity=0.245 Sum_probs=46.4
Q ss_pred HHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCC-ceecCCcHHHHHHHhCC-chHHHHHHHHHHcCCCEEEecCCc
Q 022296 47 FESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-VYVSTGDWAEHLIRNGP-SAFKEYVEDCKQVGFDTIELNVGS 124 (299)
Q Consensus 47 Le~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g-V~v~~GtlfE~a~~qg~-~~~~~yl~~~k~lGF~~IEISdGt 124 (299)
+..+| ++.++ ++-.+ +.+.+.+.++..+++- .++..+.++ +.+ ...+++++.|++.|.+.|.++++
T Consensus 22 ~~~~G-~ig~i----~~~~~-~~~~~~~~~~~i~~~~~~~~~v~~i~-----~~~~~~~~~~~~~~~~~g~d~v~l~~~- 89 (236)
T cd04730 22 VSNAG-GLGFI----GAGYL-TPEALRAEIRKIRALTDKPFGVNLLV-----PSSNPDFEALLEVALEEGVPVVSFSFG- 89 (236)
T ss_pred HHhCC-Ccccc----CCCCC-CHHHHHHHHHHHHHhcCCCeEEeEec-----CCCCcCHHHHHHHHHhCCCCEEEEcCC-
Confidence 33344 55665 22233 4455666666666542 221111111 111 26888999999999999999988
Q ss_pred ccCChhHHHHHHHHHHHcCCc
Q 022296 125 LEIPEETLLRYVRLVKSAGLK 145 (299)
Q Consensus 125 i~i~~~~r~~lI~~~~~~G~~ 145 (299)
.+ .++++.+++.++.
T Consensus 90 --~~----~~~~~~~~~~~i~ 104 (236)
T cd04730 90 --PP----AEVVERLKAAGIK 104 (236)
T ss_pred --CC----HHHHHHHHHcCCE
Confidence 22 3466677765544
No 153
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=88.72 E-value=1.4 Score=40.48 Aligned_cols=144 Identities=15% Similarity=0.258 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc------cCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccccCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL------EIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti------~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~ 174 (299)
.+++-++.++++||+.||++-+.. ..+.++..++.+.+++. |+.+.. .+.- .. +. ..|.
T Consensus 11 ~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~-~~~~-~~---~~---------~~~~ 76 (279)
T cd00019 11 GLENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSV-HAPY-LI---NL---------ASPD 76 (279)
T ss_pred cHHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEE-EcCc-ee---cc---------CCCC
Confidence 788999999999999999975433 12457777777787787 444221 1110 00 00 0010
Q ss_pred CCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecccccc--CCCcccH---HHHHHHHh---ccCCCceEEe
Q 022296 175 PRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCK--HADSLRA---DIIAKVIG---RLGLEKTMFE 246 (299)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d--~~G~~r~---d~i~~ii~---~l~~eklifE 246 (299)
+- . .+-.++.+ .+.++.+-+.||.+|++-.- -+. ....... +.+.++++ ..|+ +|-+|
T Consensus 77 ~~--~-------r~~~~~~~---~~~i~~A~~lG~~~v~~~~g-~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi-~l~lE 142 (279)
T cd00019 77 KE--K-------REKSIERL---KDEIERCEELGIRLLVFHPG-SYLGQSKEEGLKRVIEALNELIDKAETKGV-VIALE 142 (279)
T ss_pred HH--H-------HHHHHHHH---HHHHHHHHHcCCCEEEECCC-CCCCCCHHHHHHHHHHHHHHHHHhccCCCC-EEEEe
Confidence 00 0 01124455 55556666779999887432 111 1111112 33444443 2333 46666
Q ss_pred c---------CCchhHHHHHHHhC--CCcccccCCCCc
Q 022296 247 A---------TNPRTSEWFIRRYG--PKVNLFVDHSQV 273 (299)
Q Consensus 247 A---------P~k~qQ~~fI~~fG--~~VNLgI~~~eV 273 (299)
- +...+-..+|+..| |+|.+-.|+.+.
T Consensus 143 n~~~~~~~~~~t~~~~~~li~~v~~~~~~g~~lD~~h~ 180 (279)
T cd00019 143 TMAGQGNEIGSSFEELKEIIDLIKEKPRVGVCIDTCHI 180 (279)
T ss_pred CCCCCCCCCCCCHHHHHHHHHhcCCCCCeEEEEEhhhH
Confidence 4 22344567999997 777665555554
No 154
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=88.62 E-value=21 Score=33.34 Aligned_cols=167 Identities=17% Similarity=0.220 Sum_probs=101.9
Q ss_pred CCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccC----ChhHHHHHHHHHHhC--Cceec--CC-cHH
Q 022296 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLM----PKPFIEEVVKRAHQH--DVYVS--TG-DWA 92 (299)
Q Consensus 22 R~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~----p~~~l~eKI~l~~~~--gV~v~--~G-tlf 92 (299)
+..|++.++.+|. .+...+..++.+..|-. +..+.|-+--. +.+.+.+..+++..+ .|.-- .| .++
T Consensus 29 ~~~gv~~~~~~~~----~~~~~~~~~~l~~~~~~-v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~~~~~aIGEiGLD~~ 103 (258)
T PRK11449 29 AQAGVGKIIVPAT----EAENFARVLALAERYQP-LYAALGLHPGMLEKHSDVSLDQLQQALERRPAKVVAVGEIGLDLF 103 (258)
T ss_pred HHCCCCEEEEeeC----CHHHHHHHHHHHHhCCC-EEEEEeeCcCccccCCHHHHHHHHHHHHhCCCCEEEEEecccCCC
Confidence 3669999999998 56688888998888864 66777776533 233455555455433 22111 13 222
Q ss_pred --H--HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 022296 93 --E--HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (299)
Q Consensus 93 --E--~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~ 168 (299)
+ ...++. -|++.++.|++++...+==+-+ ..+ ++++.+++.+... -++=...+ +
T Consensus 104 ~~~~~~~~Q~~--vf~~ql~lA~~~~~Pv~iH~r~----a~~---~~~~il~~~~~~~---~~i~H~fs-----G----- 161 (258)
T PRK11449 104 GDDPQFERQQW--LLDEQLKLAKRYDLPVILHSRR----THD---KLAMHLKRHDLPR---TGVVHGFS-----G----- 161 (258)
T ss_pred CCCCCHHHHHH--HHHHHHHHHHHhCCCEEEEecC----ccH---HHHHHHHhcCCCC---CeEEEcCC-----C-----
Confidence 1 122333 6999999999999998755554 223 4555555544211 12321111 0
Q ss_pred ccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccc-cccCCCcccHHHHHHHHhccCCCceEEec
Q 022296 169 AYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDD-VCKHADSLRADIIAKVIGRLGLEKTMFEA 247 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEarg-i~d~~G~~r~d~i~~ii~~l~~eklifEA 247 (299)
+ .+++++.++.|.+. =+ -| ++.+ +.+.+.++++.+|+++|++|.
T Consensus 162 -------------------~---------~~~a~~~l~~G~~i-S~--~g~it~~----~~~~~~~~~~~ipldriL~ET 206 (258)
T PRK11449 162 -------------------S---------LQQAERFVQLGYKI-GV--GGTITYP----RASKTRDVIAKLPLASLLLET 206 (258)
T ss_pred -------------------C---------HHHHHHHHHCCCEE-Ee--Ccccccc----CcHHHHHHHHhCChhhEEEec
Confidence 1 45569999999763 11 12 2222 335578899999999999998
Q ss_pred CCc
Q 022296 248 TNP 250 (299)
Q Consensus 248 P~k 250 (299)
.-|
T Consensus 207 D~P 209 (258)
T PRK11449 207 DAP 209 (258)
T ss_pred CCC
Confidence 766
No 155
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=88.52 E-value=2.2 Score=38.19 Aligned_cols=97 Identities=13% Similarity=0.164 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCC-hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccch
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIP-EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDK 180 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~-~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~ 180 (299)
..-++.+..++.|++.+-|.|=+-... ...-..+|+++++. +++. . . .++.
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~-------~~~p--v-~--~~Gg---------------- 81 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKA-------VGIP--V-Q--VGGG---------------- 81 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHh-------cCCC--E-E--EeCC----------------
Confidence 455667777789999999997654332 44446788888773 2211 0 0 0000
Q ss_pred hcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEe
Q 022296 181 LFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFE 246 (299)
Q Consensus 181 ~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifE 246 (299)
+ +..+++++.+++||+.|++=.. ..+ ..+.+.+++++++.+++++=
T Consensus 82 -----I---------~~~e~~~~~~~~Gad~vvigs~-~l~-----dp~~~~~i~~~~g~~~i~~s 127 (234)
T cd04732 82 -----I---------RSLEDIERLLDLGVSRVIIGTA-AVK-----NPELVKELLKEYGGERIVVG 127 (234)
T ss_pred -----c---------CCHHHHHHHHHcCCCEEEECch-HHh-----ChHHHHHHHHHcCCceEEEE
Confidence 1 1156668889999999998443 332 26678888888777666654
No 156
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=88.51 E-value=3.1 Score=38.96 Aligned_cols=41 Identities=34% Similarity=0.434 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHHHHHHHc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYVRLVKSA 142 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti---------~i~~~~r~~lI~~~~~~ 142 (299)
.+.+..+.+++.|||+|||+=++- --+.+.-.++++.+++.
T Consensus 103 ~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~ 152 (296)
T cd04740 103 EFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA 152 (296)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc
Confidence 556667778888999999975542 23445556788888875
No 157
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=88.47 E-value=3.5 Score=38.16 Aligned_cols=142 Identities=18% Similarity=0.193 Sum_probs=89.1
Q ss_pred hhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhC--CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022296 40 HNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (299)
Q Consensus 40 ~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (299)
...+-+.|..+| ||.+=+|+-+. .+. =.+.++.+.+. ++.+. ++.+. -.+-++.+.+.|++.
T Consensus 22 k~~i~~~L~~~G--v~~iE~g~p~~---~~~-~~e~~~~l~~~~~~~~~~-------~~~r~---~~~~v~~a~~~g~~~ 85 (259)
T cd07939 22 KLAIARALDEAG--VDEIEVGIPAM---GEE-EREAIRAIVALGLPARLI-------VWCRA---VKEDIEAALRCGVTA 85 (259)
T ss_pred HHHHHHHHHHcC--CCEEEEecCCC---CHH-HHHHHHHHHhcCCCCEEE-------EeccC---CHHHHHHHHhCCcCE
Confidence 345566777787 88888886543 211 12344444432 22211 11221 134467788999999
Q ss_pred EEecCCcccCC--------h----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccC
Q 022296 118 IELNVGSLEIP--------E----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLAS 185 (299)
Q Consensus 118 IEISdGti~i~--------~----~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~ 185 (299)
|-++...-+.. . +.-.+.|+.+++.|+.|. |+..+. +
T Consensus 86 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~~~~----~------------------------- 134 (259)
T cd07939 86 VHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS--VGAEDA----S------------------------- 134 (259)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE--EeeccC----C-------------------------
Confidence 99976443332 1 334578999999998643 444110 0
Q ss_pred CCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 186 NPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 186 ~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
..+++.+ .+.+++..++|++.| .|+|..|...++.+.+++..+
T Consensus 135 --~~~~~~~---~~~~~~~~~~G~~~i-----~l~DT~G~~~P~~v~~lv~~l 177 (259)
T cd07939 135 --RADPDFL---IEFAEVAQEAGADRL-----RFADTVGILDPFTTYELIRRL 177 (259)
T ss_pred --CCCHHHH---HHHHHHHHHCCCCEE-----EeCCCCCCCCHHHHHHHHHHH
Confidence 0126777 888899999999976 478999999999998888643
No 158
>PLN02321 2-isopropylmalate synthase
Probab=88.37 E-value=5.3 Score=42.52 Aligned_cols=141 Identities=12% Similarity=0.114 Sum_probs=98.8
Q ss_pred EEEeeCcccccCChh-----------HHHHHHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC
Q 022296 56 GLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG 123 (299)
Q Consensus 56 ~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV-~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdG 123 (299)
.+-+-..||-++-+. .+++-+++++++|. .|..+ .|.+..-+++.+.++++.+.+.|.+.|=|.|-
T Consensus 185 ~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs--~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DT 262 (632)
T PLN02321 185 RIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFS--PEDAGRSDPEFLYRILGEVIKAGATTLNIPDT 262 (632)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEe--cccCCCCCHHHHHHHHHHHHHcCCCEEEeccc
Confidence 355555666554322 36677889999987 35444 34455556667888999999999999999999
Q ss_pred cccCChhHHHHHHHHHHHcCCcc--cceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHH
Q 022296 124 SLEIPEETLLRYVRLVKSAGLKA--KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRA 201 (299)
Q Consensus 124 ti~i~~~~r~~lI~~~~~~G~~v--~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 201 (299)
.--+.+++-.++|+.+++. +.. ...+++.+. .| .... +...
T Consensus 263 vG~~~P~~v~~li~~l~~~-~~~~~~v~i~vH~H-------ND--------------------------~GlA---vANs 305 (632)
T PLN02321 263 VGYTLPSEFGQLIADIKAN-TPGIENVIISTHCQ-------ND--------------------------LGLS---TANT 305 (632)
T ss_pred ccCCCHHHHHHHHHHHHHh-cCCCCCceEEEEeC-------CC--------------------------CCHH---HHHH
Confidence 9999999999999999874 111 112444321 11 2334 5666
Q ss_pred HHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhc
Q 022296 202 ERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGR 237 (299)
Q Consensus 202 ~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~ 237 (299)
...++|||+.| |+- ||=+..||...+.+-..+..
T Consensus 306 laAv~AGA~~V--d~TinGlGERaGNa~LEevv~~L~~ 341 (632)
T PLN02321 306 LAGAHAGARQV--EVTINGIGERAGNASLEEVVMAIKC 341 (632)
T ss_pred HHHHHhCCCEE--EEecccccccccCccHHHHHHHHHh
Confidence 77899999984 775 88889999998877766653
No 159
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=88.36 E-value=8 Score=36.41 Aligned_cols=143 Identities=12% Similarity=0.149 Sum_probs=90.6
Q ss_pred hHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 022296 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (299)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEI 120 (299)
..+-+.|..+| ||.+=+|+..+. | ...+-++...+.+.....-+|. . .-.+.++.+.+.|.+.|.+
T Consensus 25 ~~i~~~L~~~G--v~~IEvG~P~~~--~--~~~~~~~~l~~~~~~~~v~~~~-----r---~~~~di~~a~~~g~~~i~i 90 (262)
T cd07948 25 IEIAKALDAFG--VDYIELTSPAAS--P--QSRADCEAIAKLGLKAKILTHI-----R---CHMDDARIAVETGVDGVDL 90 (262)
T ss_pred HHHHHHHHHcC--CCEEEEECCCCC--H--HHHHHHHHHHhCCCCCcEEEEe-----c---CCHHHHHHHHHcCcCEEEE
Confidence 45667788888 999999985443 3 2344455554444321112232 2 2234688888899999998
Q ss_pred cCCc--------ccCChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCc
Q 022296 121 NVGS--------LEIPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPE 188 (299)
Q Consensus 121 SdGt--------i~i~~~~----r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 188 (299)
.... ...+.++ -.++|+.+++.|++| .++..+...
T Consensus 91 ~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v--~~~~eda~r------------------------------- 137 (262)
T cd07948 91 VFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEV--RFSSEDSFR------------------------------- 137 (262)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE--EEEEEeeCC-------------------------------
Confidence 5432 2333333 456678999998763 445421110
Q ss_pred cchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 189 IEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 189 ~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
.+++.+ .+.+++..++||+.| .|.|..|-..+..+.++++.+
T Consensus 138 ~~~~~l---~~~~~~~~~~g~~~i-----~l~Dt~G~~~P~~v~~~~~~~ 179 (262)
T cd07948 138 SDLVDL---LRVYRAVDKLGVNRV-----GIADTVGIATPRQVYELVRTL 179 (262)
T ss_pred CCHHHH---HHHHHHHHHcCCCEE-----EECCcCCCCCHHHHHHHHHHH
Confidence 115566 777788889999965 478889999999888888754
No 160
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=88.23 E-value=1 Score=42.60 Aligned_cols=40 Identities=25% Similarity=0.384 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCC----------hhHHHHHHHHHHH
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIP----------EETLLRYVRLVKS 141 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~----------~~~r~~lI~~~~~ 141 (299)
...++++.+.+.|.|.|+||.|+..-+ ......+++.+++
T Consensus 229 e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 278 (327)
T cd02803 229 EAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKK 278 (327)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHH
Confidence 456678888899999999999986432 2344567777776
No 161
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=88.18 E-value=15 Score=36.21 Aligned_cols=142 Identities=19% Similarity=0.293 Sum_probs=90.2
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (299)
.+-+.|..+| ||.+=+||=.+ .++ =.+.++.+.+.+.....-+| .+ ...+-++.+.+.|++.|.|+
T Consensus 30 ~ia~~L~~~G--V~~IE~G~p~~---~~~-~~e~i~~i~~~~~~~~i~~~-----~r---~~~~di~~a~~~g~~~i~i~ 95 (378)
T PRK11858 30 AIARMLDEIG--VDQIEAGFPAV---SED-EKEAIKAIAKLGLNASILAL-----NR---AVKSDIDASIDCGVDAVHIF 95 (378)
T ss_pred HHHHHHHHhC--CCEEEEeCCCc---ChH-HHHHHHHHHhcCCCeEEEEE-----cc---cCHHHHHHHHhCCcCEEEEE
Confidence 4556677777 78888886443 222 23445555555554322234 11 12445788888999999998
Q ss_pred CCcccC--------Ch----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCcc
Q 022296 122 VGSLEI--------PE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEI 189 (299)
Q Consensus 122 dGti~i--------~~----~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (299)
..+-++ +. +.-.+.|+.+++.|+.| .|+-. +.+ ..
T Consensus 96 ~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v--~~~~e----d~~---------------------------r~ 142 (378)
T PRK11858 96 IATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYV--SFSAE----DAS---------------------------RT 142 (378)
T ss_pred EcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE--EEEec----cCC---------------------------CC
Confidence 765443 22 33445888999999874 33321 100 01
Q ss_pred chhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 190 EVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 190 ~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
+++.+ ++.++...++||+.|. |+|..|-..+..+.+++..+
T Consensus 143 ~~~~l---~~~~~~~~~~Ga~~I~-----l~DT~G~~~P~~v~~lv~~l 183 (378)
T PRK11858 143 DLDFL---IEFAKAAEEAGADRVR-----FCDTVGILDPFTMYELVKEL 183 (378)
T ss_pred CHHHH---HHHHHHHHhCCCCEEE-----EeccCCCCCHHHHHHHHHHH
Confidence 26777 8888899999999764 67888888888888777654
No 162
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=87.94 E-value=3.1 Score=38.68 Aligned_cols=79 Identities=20% Similarity=0.285 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC--------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEI--------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i--------~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~ 173 (299)
.+.+..+.+.+.|+|+|||+-++-.. ..+.-.++++.+++. . -+| +.+|-...
T Consensus 112 ~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~-~-~~p-v~vKl~~~---------------- 172 (289)
T cd02810 112 DYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA-V-DIP-LLVKLSPY---------------- 172 (289)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc-c-CCC-EEEEeCCC----------------
Confidence 55666778888899999998775432 234556788888873 0 112 55552210
Q ss_pred CCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc
Q 022296 174 APRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD 217 (299)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar 217 (299)
.+.+++ ++.++...++|||.|.+-.+
T Consensus 173 ---------------~~~~~~---~~~a~~l~~~Gad~i~~~~~ 198 (289)
T cd02810 173 ---------------FDLEDI---VELAKAAERAGADGLTAINT 198 (289)
T ss_pred ---------------CCHHHH---HHHHHHHHHcCCCEEEEEcc
Confidence 113455 77788889999999999765
No 163
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.59 E-value=6.5 Score=36.02 Aligned_cols=123 Identities=12% Similarity=0.107 Sum_probs=77.9
Q ss_pred chhHHHHHHHhhcccccEEEeeCccc---------------ccCChhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCc
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSH---------------SLMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPS 101 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs---------------~l~p~~~l~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~ 101 (299)
+++.++-+-+...+| +-+.+|-||- .++++..-.+.++.|+++||.+.|| |.-|+.-.
T Consensus 39 tp~a~~~I~~l~~~~-~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~~~vi~~a~~~~i~~iPG~~TptEi~~A---- 113 (201)
T PRK06015 39 TPAALDAIRAVAAEV-EEAIVGAGTILNAKQFEDAAKAGSRFIVSPGTTQELLAAANDSDVPLLPGAATPSEVMAL---- 113 (201)
T ss_pred CccHHHHHHHHHHHC-CCCEEeeEeCcCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHH----
Confidence 444555444444444 4466777662 2344456678899999999999998 78888754
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
.++|++.|-+==...-= -..+|+.++. ++|.+-.. -+| +
T Consensus 114 ---------~~~Ga~~vK~FPa~~~G----G~~yikal~~----plp~~~l~----ptG--G------------------ 152 (201)
T PRK06015 114 ---------REEGYTVLKFFPAEQAG----GAAFLKALSS----PLAGTFFC----PTG--G------------------ 152 (201)
T ss_pred ---------HHCCCCEEEECCchhhC----CHHHHHHHHh----hCCCCcEE----ecC--C------------------
Confidence 46899999875422110 1367777766 55543332 111 1
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccC
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKH 222 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~ 222 (299)
++ .+.+...|+||+..+.. +.-++++
T Consensus 153 -------V~-------~~n~~~~l~ag~~~~~g-gs~l~~~ 178 (201)
T PRK06015 153 -------IS-------LKNARDYLSLPNVVCVG-GSWVAPK 178 (201)
T ss_pred -------CC-------HHHHHHHHhCCCeEEEE-chhhCCc
Confidence 11 34559999999998887 7777754
No 164
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=87.50 E-value=5.6 Score=41.18 Aligned_cols=153 Identities=13% Similarity=0.169 Sum_probs=90.6
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCC-chHHHHHHHHHHcCCCEEEe
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGP-SAFKEYVEDCKQVGFDTIEL 120 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~-~~~~~yl~~~k~lGF~~IEI 120 (299)
.+-+.|..+| ||.+=.||..+.-...+.+++..++-- .+..++. |. .+...+- ...+.-++.+.+.|.+.|-+
T Consensus 31 ~ia~~L~~~G--vd~IEvG~p~as~~d~~~~~~i~~~~l-~~~~i~~--~~-~~~~~~i~~~~d~~~e~~~~~g~~~i~i 104 (524)
T PRK12344 31 RIARKLDELG--VDYIEGGWPGSNPKDTEFFKRAKELKL-KHAKLAA--FG-STRRAGVSAEEDPNLQALLDAGTPVVTI 104 (524)
T ss_pred HHHHHHHHcC--CCEEEEcCCcCChhHHHHHHHHHHhCC-CCcEEEE--Ee-eccccCCCcccHHHHHHHHhCCCCEEEE
Confidence 4556677788 899999996554333333333333110 1233322 11 1111110 01245567888999999999
Q ss_pred cCCcccCChh------------HHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCc
Q 022296 121 NVGSLEIPEE------------TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPE 188 (299)
Q Consensus 121 SdGti~i~~~------------~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 188 (299)
...+-++-.+ .-.+.|+.+++.|++|. |+-.+- . |. + .
T Consensus 105 ~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~--~~~e~~-~------Da--------~-------------r 154 (524)
T PRK12344 105 FGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVI--FDAEHF-F------DG--------Y-------------K 154 (524)
T ss_pred EECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEE--Eccccc-c------cc--------c-------------c
Confidence 8765443222 22367888999888752 333100 0 10 0 0
Q ss_pred cchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 189 IEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 189 ~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
.+++.+ ++.++...++||+.|. |+|..|-..+..+.++++.+
T Consensus 155 ~d~~~l---~~~~~~~~~~Gad~i~-----l~DTvG~~~P~~v~~li~~l 196 (524)
T PRK12344 155 ANPEYA---LATLKAAAEAGADWVV-----LCDTNGGTLPHEVAEIVAEV 196 (524)
T ss_pred CCHHHH---HHHHHHHHhCCCCeEE-----EccCCCCcCHHHHHHHHHHH
Confidence 126777 8888889999999886 88888998888888777654
No 165
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=87.44 E-value=3.3 Score=39.92 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=56.0
Q ss_pred EEEeeCcccccCChhHHHHHHHHHHhC-Cceec--C-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-C--C
Q 022296 56 GLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVS--T-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-I--P 128 (299)
Q Consensus 56 ~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~--~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~-i--~ 128 (299)
..|-|.|++.+.+++.+.+.++-.++. ++++. . .||-+ ......++.+.+.+.|.+.|.|...+.+ + .
T Consensus 105 v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~-----~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G 179 (321)
T PRK10415 105 VNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAP-----EHRNCVEIAQLAEDCGIQALTIHGRTRACLFNG 179 (321)
T ss_pred HcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccC-----CcchHHHHHHHHHHhCCCEEEEecCccccccCC
Confidence 356777888899999999999988764 44444 2 35533 1124678888899999999999987642 1 1
Q ss_pred hhHHHHHHHHHHH
Q 022296 129 EETLLRYVRLVKS 141 (299)
Q Consensus 129 ~~~r~~lI~~~~~ 141 (299)
..+ .++|+++++
T Consensus 180 ~a~-~~~i~~ik~ 191 (321)
T PRK10415 180 EAE-YDSIRAVKQ 191 (321)
T ss_pred CcC-hHHHHHHHH
Confidence 233 378888887
No 166
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=87.44 E-value=3.3 Score=40.00 Aligned_cols=116 Identities=16% Similarity=0.242 Sum_probs=75.9
Q ss_pred HHHhCCceecC-C--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-----------ccCChhHHHHHHHHHHHcC
Q 022296 78 RAHQHDVYVST-G--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-----------LEIPEETLLRYVRLVKSAG 143 (299)
Q Consensus 78 l~~~~gV~v~~-G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-----------i~i~~~~r~~lI~~~~~~G 143 (299)
++..-+|+|.- + ||- ++..+.+.++...+.|.-.|-|-|.. --+|.++.++-|+.+++.-
T Consensus 73 I~~~~~iPviaD~d~GyG------~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~ 146 (292)
T PRK11320 73 ITDACDLPLLVDIDTGFG------GAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDAR 146 (292)
T ss_pred HHhccCCCEEEECCCCCC------CHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhc
Confidence 44555677664 2 342 22356667888889999999998854 2368898888888887741
Q ss_pred CcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCC
Q 022296 144 LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHA 223 (299)
Q Consensus 144 ~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~ 223 (299)
- -++|-+ ...+ |. + + .. ..++. |+++++..+||||.|.+|+- .
T Consensus 147 ~--~~d~~I---iART----Da----~-----~---------~~--g~deA---I~Ra~aY~eAGAD~ifi~~~--~--- 189 (292)
T PRK11320 147 T--DPDFVI---MART----DA----L-----A---------VE--GLDAA---IERAQAYVEAGADMIFPEAM--T--- 189 (292)
T ss_pred c--CCCeEE---EEec----Cc----c-----c---------cc--CHHHH---HHHHHHHHHcCCCEEEecCC--C---
Confidence 1 133433 1111 10 0 0 01 15677 99999999999999999972 1
Q ss_pred CcccHHHHHHHHhccC
Q 022296 224 DSLRADIIAKVIGRLG 239 (299)
Q Consensus 224 G~~r~d~i~~ii~~l~ 239 (299)
..+.+.++.+.++
T Consensus 190 ---~~~~i~~~~~~~~ 202 (292)
T PRK11320 190 ---ELEMYRRFADAVK 202 (292)
T ss_pred ---CHHHHHHHHHhcC
Confidence 3677778887665
No 167
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=87.43 E-value=1.8 Score=42.18 Aligned_cols=79 Identities=11% Similarity=0.107 Sum_probs=53.6
Q ss_pred hhHHHHHHHhhcccccEEEeeCcccc------cCChhHHHHHHHHHHhC-C-----cee----cCCcHHHHHHHhCCchH
Q 022296 40 HNVLEDIFESMGQFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQH-D-----VYV----STGDWAEHLIRNGPSAF 103 (299)
Q Consensus 40 ~~~l~DlLe~ag~yID~lKfg~GTs~------l~p~~~l~eKI~l~~~~-g-----V~v----~~GtlfE~a~~qg~~~~ 103 (299)
...+..+++.+++|.|++=+-+++-. ...++.+.+.++-.++. + ++| .|+. .. +.+
T Consensus 156 ~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~------~~--~~~ 227 (344)
T PRK05286 156 VDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDL------SD--EEL 227 (344)
T ss_pred HHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCC------CH--HHH
Confidence 45777888888889999888775543 33445566666666652 2 433 3330 01 146
Q ss_pred HHHHHHHHHcCCCEEEecCCccc
Q 022296 104 KEYVEDCKQVGFDTIELNVGSLE 126 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~ 126 (299)
.+..+.|.+.|.|.|.+++++.+
T Consensus 228 ~~ia~~l~~~Gadgi~~~nt~~~ 250 (344)
T PRK05286 228 DDIADLALEHGIDGVIATNTTLS 250 (344)
T ss_pred HHHHHHHHHhCCcEEEEeCCccc
Confidence 67888899999999999999854
No 168
>PLN02591 tryptophan synthase
Probab=87.21 E-value=1.8 Score=40.79 Aligned_cols=107 Identities=9% Similarity=0.127 Sum_probs=70.7
Q ss_pred chhHHHHHHHh-hcccccEEEeeCcccc-cCChhHHH--------------HHHHHHHh----CCceecCCcHHHHHHHh
Q 022296 39 SHNVLEDIFES-MGQFVDGLKFSGGSHS-LMPKPFIE--------------EVVKRAHQ----HDVYVSTGDWAEHLIRN 98 (299)
Q Consensus 39 g~~~l~DlLe~-ag~yID~lKfg~GTs~-l~p~~~l~--------------eKI~l~~~----~gV~v~~GtlfE~a~~q 98 (299)
.+..+.+++.. .-..+|++=+|+=.|= +.+-..++ +-.++.++ +++++..=|++-..+..
T Consensus 14 ~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~ 93 (250)
T PLN02591 14 DLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILKR 93 (250)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHh
Confidence 44555554443 3456999999975431 11111111 22233322 44543333667777766
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 022296 99 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
.+++|++.|++.|.+.+=|- +||.++..++++.++++|+..++=+.-
T Consensus 94 ---G~~~F~~~~~~aGv~Gviip----DLP~ee~~~~~~~~~~~gl~~I~lv~P 140 (250)
T PLN02591 94 ---GIDKFMATIKEAGVHGLVVP----DLPLEETEALRAEAAKNGIELVLLTTP 140 (250)
T ss_pred ---HHHHHHHHHHHcCCCEEEeC----CCCHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 49999999999999999887 588999999999999999987775533
No 169
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=87.03 E-value=5.2 Score=41.44 Aligned_cols=152 Identities=15% Similarity=0.080 Sum_probs=85.4
Q ss_pred hHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCC---ceecCCcHHHH-HHHhC-CchHHHHHHHHHHcCC
Q 022296 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD---VYVSTGDWAEH-LIRNG-PSAFKEYVEDCKQVGF 115 (299)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g---V~v~~GtlfE~-a~~qg-~~~~~~yl~~~k~lGF 115 (299)
-.+-+.|..+| ||.+-.||-.+. |.+ .+.++...+.. ...+.+....+ ++.+- .+.++.-++..++-|.
T Consensus 109 i~Ia~~L~~~G--Vd~IEvG~Pa~s--~~e--~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~~a~~~a~~ 182 (503)
T PLN03228 109 LEIARQLAKLR--VDIMEVGFPGSS--EEE--FEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAWEALKYAKR 182 (503)
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCC--HHH--HHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHHHhhcccCC
Confidence 45667788888 889999883332 222 22233333221 11122211111 22221 0013333332333377
Q ss_pred CEEEecCCcccCChhHH------------HHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcc
Q 022296 116 DTIELNVGSLEIPEETL------------LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFL 183 (299)
Q Consensus 116 ~~IEISdGti~i~~~~r------------~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~ 183 (299)
+.|-+.-.+-++-.+.+ .+.|+.+++.|+.+ .+|+-. |. +
T Consensus 183 ~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~-v~f~~E----------Da------------~----- 234 (503)
T PLN03228 183 PRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHD-IQFGCE----------DG------------G----- 234 (503)
T ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCce-EEeccc----------cc------------c-----
Confidence 88887666554443322 67888999998761 233331 10 0
Q ss_pred cCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 184 ASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 184 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
..+++.+ .+.++...++||+.| .|+|..|-..+..+.+++..+
T Consensus 235 ----Rtd~efl---~~~~~~a~~~Gad~I-----~l~DTvG~~tP~~v~~lV~~l 277 (503)
T PLN03228 235 ----RSDKEFL---CKILGEAIKAGATSV-----GIADTVGINMPHEFGELVTYV 277 (503)
T ss_pred ----ccCHHHH---HHHHHHHHhcCCCEE-----EEecCCCCCCHHHHHHHHHHH
Confidence 1126777 888899999999986 478889999988888777554
No 170
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.00 E-value=1.5 Score=40.32 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=70.2
Q ss_pred HHHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 022296 74 EVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 74 eKI~l~~~~gV-~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
+-.+...+++| .|.-|.=.|. .-+..+.+.+.|+++|||. +......+.|+.+++.. |++
T Consensus 7 ~~~~~l~~~~~iaV~r~~~~~~--------a~~i~~al~~~Gi~~iEit-----l~~~~~~~~I~~l~~~~----p~~-- 67 (212)
T PRK05718 7 SIEEILRAGPVVPVIVINKLED--------AVPLAKALVAGGLPVLEVT-----LRTPAALEAIRLIAKEV----PEA-- 67 (212)
T ss_pred HHHHHHHHCCEEEEEEcCCHHH--------HHHHHHHHHHcCCCEEEEe-----cCCccHHHHHHHHHHHC----CCC--
Confidence 34456678887 4544643333 3345688899999999998 55567889999998731 222
Q ss_pred ecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-----------cccc
Q 022296 153 MFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-----------DVCK 221 (299)
Q Consensus 153 K~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-----------gi~d 221 (299)
-||. + |- ++ .++++..++|||++++.=+= ++--
T Consensus 68 -----~IGA--G---------------------TV-l~-------~~~a~~a~~aGA~FivsP~~~~~vi~~a~~~~i~~ 111 (212)
T PRK05718 68 -----LIGA--G---------------------TV-LN-------PEQLAQAIEAGAQFIVSPGLTPPLLKAAQEGPIPL 111 (212)
T ss_pred -----EEEE--e---------------------ec-cC-------HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCE
Confidence 1221 1 00 11 35569999999999997652 1111
Q ss_pred CCCcccHHHHHHHHhccCCCceEE
Q 022296 222 HADSLRADIIAKVIGRLGLEKTMF 245 (299)
Q Consensus 222 ~~G~~r~d~i~~ii~~l~~eklif 245 (299)
==|-....++.+.. +.|.+-+-+
T Consensus 112 iPG~~TptEi~~a~-~~Ga~~vKl 134 (212)
T PRK05718 112 IPGVSTPSELMLGM-ELGLRTFKF 134 (212)
T ss_pred eCCCCCHHHHHHHH-HCCCCEEEE
Confidence 11555555555543 467665555
No 171
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=86.86 E-value=21 Score=31.79 Aligned_cols=124 Identities=16% Similarity=0.172 Sum_probs=77.0
Q ss_pred CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCc
Q 022296 83 DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSD 162 (299)
Q Consensus 83 gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~ 162 (299)
+|++-.+++ .. -...++.|.+.|.|.|=+..- .++.++-.++++.++..|+.+..++.-
T Consensus 72 ~iPi~~~~~-----i~----~~~~v~~~~~~Gad~v~l~~~--~~~~~~~~~~~~~~~~~g~~~~v~v~~---------- 130 (217)
T cd00331 72 SLPVLRKDF-----II----DPYQIYEARAAGADAVLLIVA--ALDDEQLKELYELARELGMEVLVEVHD---------- 130 (217)
T ss_pred CCCEEECCe-----ec----CHHHHHHHHHcCCCEEEEeec--cCCHHHHHHHHHHHHHcCCeEEEEECC----------
Confidence 787776551 11 124799999999999998544 455577778999888877766433310
Q ss_pred ccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCC-C
Q 022296 163 RDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL-E 241 (299)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~-e 241 (299)
.+++++.+++|+++|.+=++..... ....+.+.++.+.++. -
T Consensus 131 -----------------------------------~~e~~~~~~~g~~~i~~t~~~~~~~--~~~~~~~~~l~~~~~~~~ 173 (217)
T cd00331 131 -----------------------------------EEELERALALGAKIIGINNRDLKTF--EVDLNTTERLAPLIPKDV 173 (217)
T ss_pred -----------------------------------HHHHHHHHHcCCCEEEEeCCCcccc--CcCHHHHHHHHHhCCCCC
Confidence 2334777889999998876532211 2334667777766642 2
Q ss_pred ceEEecCCch-hHHHHHHHhCCCc
Q 022296 242 KTMFEATNPR-TSEWFIRRYGPKV 264 (299)
Q Consensus 242 klifEAP~k~-qQ~~fI~~fG~~V 264 (299)
.++-+.=-.+ .+..-+...|.+.
T Consensus 174 pvia~gGI~s~edi~~~~~~Ga~g 197 (217)
T cd00331 174 ILVSESGISTPEDVKRLAEAGADA 197 (217)
T ss_pred EEEEEcCCCCHHHHHHHHHcCCCE
Confidence 4455554333 5555556666543
No 172
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=86.53 E-value=4 Score=38.45 Aligned_cols=74 Identities=27% Similarity=0.283 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHcC-CCEEEecCCccc---------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 022296 102 AFKEYVEDCKQVG-FDTIELNVGSLE---------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (299)
Q Consensus 102 ~~~~yl~~~k~lG-F~~IEISdGti~---------i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~ 171 (299)
.+.+..+.+++.| ||+|||+-++-. -..+.-.++|+.+++.- -+| +.+|-.
T Consensus 105 ~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~--~~p-v~vKl~---------------- 165 (301)
T PRK07259 105 EYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV--KVP-VIVKLT---------------- 165 (301)
T ss_pred HHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCC-EEEEcC----------------
Confidence 5666677788889 999999654322 23466678888888752 122 455521
Q ss_pred cCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEE
Q 022296 172 ARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMI 214 (299)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIi 214 (299)
| +++++ ++.++...++|||.|.+
T Consensus 166 -~----------------~~~~~---~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 166 -P----------------NVTDI---VEIAKAAEEAGADGLSL 188 (301)
T ss_pred -C----------------CchhH---HHHHHHHHHcCCCEEEE
Confidence 1 02234 56677788999998876
No 173
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=86.50 E-value=3.9 Score=40.39 Aligned_cols=84 Identities=17% Similarity=0.205 Sum_probs=59.5
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCC
Q 022296 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASN 186 (299)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
.+.+++-|.++|-|-+|+ ..+...|+.+.+.|.-|.-.+|..-. + +..++.|=. .+.
T Consensus 120 ~rl~~eaGa~aVKlEGg~-----~~~~~~I~~l~~~GIPV~gHiGLtPQ-s------~~~lGGykv-----------qGr 176 (332)
T PLN02424 120 VRMLKEGGMDAVKLEGGS-----PSRVTAAKAIVEAGIAVMGHVGLTPQ-A------ISVLGGFRP-----------QGR 176 (332)
T ss_pred HHHHHHhCCcEEEECCCc-----HHHHHHHHHHHHcCCCEEEeecccce-e------ehhhcCccc-----------cCC
Confidence 445577899999999997 56789999999999999999988421 1 111111100 000
Q ss_pred CccchhhhhhhHHHHHHHHHccCcEEEEec
Q 022296 187 PEIEVGVGINKSRRAERCLEAGADMIMIDS 216 (299)
Q Consensus 187 ~~~~~~~~~~~i~~~~~dLeAGA~~VIiEa 216 (299)
..-+..++ ++.++.--+|||+.|.+|+
T Consensus 177 ~~~~a~~l---i~dA~ale~AGAf~ivLE~ 203 (332)
T PLN02424 177 TAESAVKV---VETALALQEAGCFAVVLEC 203 (332)
T ss_pred CHHHHHHH---HHHHHHHHHcCCcEEEEcC
Confidence 11124567 9999999999999999998
No 174
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=86.45 E-value=1.5 Score=41.86 Aligned_cols=58 Identities=26% Similarity=0.437 Sum_probs=46.9
Q ss_pred HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCcccce
Q 022296 91 WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPK 149 (299)
Q Consensus 91 lfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~G~~v~~E 149 (299)
..|.|+-.+ -+..+=+..+|++|||-||+|-.- ++-+.++|..+++.+.+.|+..-+-
T Consensus 9 IYEKAlp~~-~sW~erl~~AK~~GFDFvEmSvDEsDeRLaRLDWs~~er~~l~~ai~etgv~ipSm 73 (287)
T COG3623 9 IYEKALPNG-FSWLERLALAKELGFDFVEMSVDESDERLARLDWSKEERLALVNAIQETGVRIPSM 73 (287)
T ss_pred eehhhccCC-CCHHHHHHHHHHcCCCeEEEeccchHHHHHhcCCCHHHHHHHHHHHHHhCCCccch
Confidence 346776554 457777889999999999999753 5889999999999999999886553
No 175
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=86.30 E-value=7.3 Score=31.21 Aligned_cols=96 Identities=23% Similarity=0.390 Sum_probs=70.7
Q ss_pred chhHHHHHHHhhc-cc-ccEEEeeCcccccCChhHHHHHHHHHHhC---CceecC---CcHHHHHHHhCCchHHHHHHHH
Q 022296 39 SHNVLEDIFESMG-QF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQH---DVYVST---GDWAEHLIRNGPSAFKEYVEDC 110 (299)
Q Consensus 39 g~~~l~DlLe~ag-~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~---gV~v~~---GtlfE~a~~qg~~~~~~yl~~~ 110 (299)
.+..+.+.+.... +. +..+=|++|...+.| ...+++..+++. ++.+.. |++.. +++++.+
T Consensus 29 ~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~~--~~~~~~~~~~~~~~~~~~i~~~t~~~~~~----------~~~l~~l 96 (166)
T PF04055_consen 29 SPEEILEEIKELKQDKGVKEIFFGGGEPTLHP--DFIELLELLRKIKKRGIRISINTNGTLLD----------EELLDEL 96 (166)
T ss_dssp HHHHHHHHHHHHHHHTTHEEEEEESSTGGGSC--HHHHHHHHHHHCTCTTEEEEEEEESTTHC----------HHHHHHH
T ss_pred CHHHHHHHHHHHhHhcCCcEEEEeecCCCcch--hHHHHHHHHHHhhccccceeeeccccchh----------HHHHHHH
Confidence 4455666555552 33 899999999999998 667777777775 775553 55443 6788999
Q ss_pred HHcCCCEEEecCCccc-----------CChhHHHHHHHHHHHcCCcc
Q 022296 111 KQVGFDTIELNVGSLE-----------IPEETLLRYVRLVKSAGLKA 146 (299)
Q Consensus 111 k~lGF~~IEISdGti~-----------i~~~~r~~lI~~~~~~G~~v 146 (299)
+++|++.|.+|=-+.+ -+.++..+.++.+++.|+..
T Consensus 97 ~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 97 KKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSET
T ss_pred HhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCCc
Confidence 9999999998755542 35567788999999999884
No 176
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=86.15 E-value=5 Score=38.07 Aligned_cols=58 Identities=14% Similarity=0.106 Sum_probs=39.7
Q ss_pred cccccCChhHHHHHHHHHHhC-CceecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc
Q 022296 62 GSHSLMPKPFIEEVVKRAHQH-DVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE 126 (299)
Q Consensus 62 GTs~l~p~~~l~eKI~l~~~~-gV~v~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~ 126 (299)
|......++.+.+.++..++. ++++.. -+. +.+.+.++.+.|.+.|.+.|=++|-+..
T Consensus 146 G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~-------~~~~~~~~a~~~~~~Gadgi~~~Nt~~~ 205 (299)
T cd02940 146 GAAVGQDPELVEEICRWVREAVKIPVIAKLTP-------NITDIREIARAAKEGGADGVSAINTVNS 205 (299)
T ss_pred chhhccCHHHHHHHHHHHHHhcCCCeEEECCC-------CchhHHHHHHHHHHcCCCEEEEeccccc
Confidence 444556778899999888764 455443 111 1125778888899999999998886643
No 177
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=85.98 E-value=10 Score=34.84 Aligned_cols=102 Identities=18% Similarity=0.129 Sum_probs=64.6
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCce---------------ecCC
Q 022296 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY---------------VSTG 89 (299)
Q Consensus 25 GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~---------------v~~G 89 (299)
.++.+.+=|+. ....++.+++ +| .|. +..||..+.+++.+++..+.+.+-.|. |.+-
T Consensus 74 ~ipv~~~GGi~---s~~~~~~~l~-~G--a~~--Viigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~ 145 (253)
T PRK02083 74 FIPLTVGGGIR---SVEDARRLLR-AG--ADK--VSINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTH 145 (253)
T ss_pred CCCEEeeCCCC---CHHHHHHHHH-cC--CCE--EEEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEc
Confidence 45666666662 4566677777 33 444 467898888888888766655211122 2222
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEe----cCCcccCChhHHHHHHHHHHH
Q 022296 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL----NVGSLEIPEETLLRYVRLVKS 141 (299)
Q Consensus 90 tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEI----SdGti~i~~~~r~~lI~~~~~ 141 (299)
+|.+. ......++.+.+.++|++.|=+ .+|+..-++ ..+|+.+++
T Consensus 146 ~~~~~----~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d---~~~i~~~~~ 194 (253)
T PRK02083 146 GGRKP----TGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYD---LELTRAVSD 194 (253)
T ss_pred CCcee----cCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcC---HHHHHHHHh
Confidence 34432 1226778899999999999888 457777664 456666666
No 178
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=85.92 E-value=6.1 Score=37.90 Aligned_cols=111 Identities=16% Similarity=0.156 Sum_probs=73.3
Q ss_pred chhHHHHHHHhhc-ccccEEEeeCcccccCChhHHHHHHHHHHhCCceecC--CcHHHHHHHh---CCchHHHHHHHHHH
Q 022296 39 SHNVLEDIFESMG-QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--GDWAEHLIRN---GPSAFKEYVEDCKQ 112 (299)
Q Consensus 39 g~~~l~DlLe~ag-~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~--GtlfE~a~~q---g~~~~~~yl~~~k~ 112 (299)
.+.++.+.++.+. .-++-+=|.+|.....+.+.+.+.++..++++..+.. =+..|+.... | -..++-++.+|+
T Consensus 73 s~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g-~~~~e~l~~Lk~ 151 (340)
T TIGR03699 73 SVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEG-LSLREVLERLKE 151 (340)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCC-CCHHHHHHHHHH
Confidence 4445444443322 2266777777877777888888999999887643332 2566664332 3 124899999999
Q ss_pred cCCCEEEe-----c-CCcc------cCChhHHHHHHHHHHHcCCccccee
Q 022296 113 VGFDTIEL-----N-VGSL------EIPEETLLRYVRLVKSAGLKAKPKF 150 (299)
Q Consensus 113 lGF~~IEI-----S-dGti------~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (299)
.|++.+-- . +-+. ..+.+++.+.|+.+++.|+++.+-+
T Consensus 152 aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~ 201 (340)
T TIGR03699 152 AGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATM 201 (340)
T ss_pred cCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccee
Confidence 99987641 1 1111 3478889999999999999877643
No 179
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=85.72 E-value=14 Score=35.08 Aligned_cols=41 Identities=22% Similarity=0.371 Sum_probs=35.0
Q ss_pred HHHHHHHHHccCcEEEEecc-----ccccCCCcccHHHHHHHHhcc
Q 022296 198 SRRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 198 i~~~~~dLeAGA~~VIiEar-----gi~d~~G~~r~d~i~~ii~~l 238 (299)
...+...+.+||+-+|||.- -+.|..-.+..+.+.++++.+
T Consensus 214 ~~~~~aAva~Ga~Gl~iE~H~~pd~a~~D~~~sl~p~~l~~l~~~i 259 (266)
T PRK13398 214 IPMAKAAIAAGADGLMIEVHPEPEKALSDARQTLNFEEMKELVDEL 259 (266)
T ss_pred HHHHHHHHHcCCCEEEEeccCCccccCCchhhcCCHHHHHHHHHHH
Confidence 55578899999999999983 678999999999999998754
No 180
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=85.58 E-value=13 Score=35.22 Aligned_cols=106 Identities=12% Similarity=0.183 Sum_probs=69.4
Q ss_pred chhHHHHHHHhh-cccccEEEeeCccc-ccCChhHHHHHHHHH------------------HhCCceecCCcHHHHHHHh
Q 022296 39 SHNVLEDIFESM-GQFVDGLKFSGGSH-SLMPKPFIEEVVKRA------------------HQHDVYVSTGDWAEHLIRN 98 (299)
Q Consensus 39 g~~~l~DlLe~a-g~yID~lKfg~GTs-~l~p~~~l~eKI~l~------------------~~~gV~v~~GtlfE~a~~q 98 (299)
.+..+.+++... -.-+|++=+|+=.| .+.+-..+++--..| +++++++..=|++...+..
T Consensus 27 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~ 106 (263)
T CHL00200 27 DIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHY 106 (263)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHh
Confidence 455666655433 34499999997443 122222222222222 2245544333667777776
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceee
Q 022296 99 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFA 151 (299)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g 151 (299)
| +++|++.|++.|+|.|=|= ++|.++..++++.++++|+...+=+.
T Consensus 107 G---~e~F~~~~~~aGvdgviip----DLP~ee~~~~~~~~~~~gi~~I~lv~ 152 (263)
T CHL00200 107 G---INKFIKKISQAGVKGLIIP----DLPYEESDYLISVCNLYNIELILLIA 152 (263)
T ss_pred C---HHHHHHHHHHcCCeEEEec----CCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 5 9999999999999999874 57889999999999999887665443
No 181
>PRK12999 pyruvate carboxylase; Reviewed
Probab=85.55 E-value=8.7 Score=43.52 Aligned_cols=159 Identities=11% Similarity=0.102 Sum_probs=106.7
Q ss_pred chhHHHHHHHhh-cccccEEEeeCcccccCChhHHHHHHHHHHhCCc--eec---CCcHHHHHHH--hCCchHHHHHHHH
Q 022296 39 SHNVLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVS---TGDWAEHLIR--NGPSAFKEYVEDC 110 (299)
Q Consensus 39 g~~~l~DlLe~a-g~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV--~v~---~GtlfE~a~~--qg~~~~~~yl~~~ 110 (299)
.-+-.+++++.| ..-||++-+.-...- -+.++.-|+.++++|- .++ +|..+ -+.. ..++.+-++.+++
T Consensus 625 p~~v~~~~i~~a~~~Gid~~rifd~lnd---~~~~~~~i~~vk~~g~~~~~~i~ytg~~~-d~~~~~~~~~~~~~~a~~l 700 (1146)
T PRK12999 625 PDNVVRAFVREAAAAGIDVFRIFDSLNW---VENMRVAIDAVRETGKIAEAAICYTGDIL-DPARAKYDLDYYVDLAKEL 700 (1146)
T ss_pred CchHHHHHHHHHHHcCCCEEEEeccCCh---HHHHHHHHHHHHHcCCeEEEEEEEEecCC-CCCCCCCCHHHHHHHHHHH
Confidence 344667766654 455999998864444 4679999999999993 222 34322 1111 2223456667778
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccc
Q 022296 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIE 190 (299)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (299)
.++|.+.|=|.|-.--+.+.+-.++|+.+++.= . -.++.... .+
T Consensus 701 ~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~-~--ipi~~H~H-nt-------------------------------- 744 (1146)
T PRK12999 701 EKAGAHILAIKDMAGLLKPAAAYELVSALKEEV-D--LPIHLHTH-DT-------------------------------- 744 (1146)
T ss_pred HHcCCCEEEECCccCCCCHHHHHHHHHHHHHHc-C--CeEEEEeC-CC--------------------------------
Confidence 889999999999999999999999999999841 1 12343211 11
Q ss_pred hhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCC
Q 022296 191 VGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL 240 (299)
Q Consensus 191 ~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~ 240 (299)
.... +-..-..++|||+.|=.=-.|+-...||...+.+-..+...+.
T Consensus 745 ~Gla---~an~laA~~aGad~vD~av~glg~~tgn~~le~vv~~L~~~~~ 791 (1146)
T PRK12999 745 SGNG---LATYLAAAEAGVDIVDVAVASMSGLTSQPSLNSIVAALEGTER 791 (1146)
T ss_pred CchH---HHHHHHHHHhCCCEEEecchhhcCCcCCHHHHHHHHHHHhcCC
Confidence 1223 5556789999999765555588888888887777666665443
No 182
>PRK09989 hypothetical protein; Provisional
Probab=84.99 E-value=1.7 Score=39.71 Aligned_cols=42 Identities=19% Similarity=0.368 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~ 147 (299)
.+.+.++.++++||+.||+.. ....+ ..++-+.+++.|+++.
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~-~~~~~---~~~~~~~l~~~Gl~v~ 57 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLF-PYDYS---TLQIQKQLEQNHLTLA 57 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECC-cccCC---HHHHHHHHHHcCCcEE
Confidence 789999999999999999964 23343 3457777888999865
No 183
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=84.97 E-value=2.1 Score=38.80 Aligned_cols=97 Identities=15% Similarity=0.184 Sum_probs=68.9
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCc-HHHHHHHhCCchHHHHHH---HHHHcC
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD-WAEHLIRNGPSAFKEYVE---DCKQVG 114 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~Gt-lfE~a~~qg~~~~~~yl~---~~k~lG 114 (299)
....+.++++..++|+|++|+|+--..-+..+.+++-++.+++++.++.--. +..+ |+-+..|.+ .+.++|
T Consensus 11 ~~~~a~~i~~~~~~~v~~iKvG~~l~~~~G~~~l~~~i~~l~~~~~~I~~D~K~~Di-----g~t~~~~~~~~~~~~~~g 85 (226)
T PF00215_consen 11 DLEEALRIADELGDYVDIIKVGTPLFLAYGLEALPEIIEELKERGKPIFLDLKLGDI-----GNTVARYAEAGFAAFELG 85 (226)
T ss_dssp SHHHHHHHHHHHGGGSSEEEEEHHHHHHHCHHHHHHHHHHHHHTTSEEEEEEEE-SS-----HHHHHHHHHSCHHHHTTT
T ss_pred CHHHHHHHHHHhcCcceEEEEChHHHhcCChhhHHHHHHHHHHhcCCEeeeeeeccc-----chHHHHHHHHhhhhhcCC
Confidence 4567889999999999999999877777777789999999999997666421 2211 112333444 567788
Q ss_pred CCEEEecCCcccCChhHHHHHHHHHHHcC
Q 022296 115 FDTIELNVGSLEIPEETLLRYVRLVKSAG 143 (299)
Q Consensus 115 F~~IEISdGti~i~~~~r~~lI~~~~~~G 143 (299)
+|++-|+-- .+.+....+++.+++.|
T Consensus 86 aD~vTv~~~---~G~~tl~~~~~~a~~~~ 111 (226)
T PF00215_consen 86 ADAVTVHPF---AGDDTLEAAVKAAKKHG 111 (226)
T ss_dssp ESEEEEEGT---THHHHHHHHHHHHHHTT
T ss_pred CcEEEEecc---CCHHHHHHHHHHHhccC
Confidence 888877642 24667777777777765
No 184
>PRK09389 (R)-citramalate synthase; Provisional
Probab=84.80 E-value=14 Score=38.04 Aligned_cols=143 Identities=20% Similarity=0.272 Sum_probs=90.6
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (299)
.+-+.|..+| ||.+=.||=.+.-.+.+.+++..++. .+..++. |. + ...+-++.+.+.|.+.|-+.
T Consensus 28 ~ia~~L~~~G--v~~IE~G~p~~~~~d~e~v~~i~~~~--~~~~i~a--~~-----r---~~~~di~~a~~~g~~~v~i~ 93 (488)
T PRK09389 28 EIARKLDELG--VDVIEAGSAITSEGEREAIKAVTDEG--LNAEICS--FA-----R---AVKVDIDAALECDVDSVHLV 93 (488)
T ss_pred HHHHHHHHcC--CCEEEEeCCcCCHHHHHHHHHHHhcC--CCcEEEe--ec-----c---cCHHHHHHHHhCCcCEEEEE
Confidence 4556677777 89999998654433334444443321 1233322 21 1 12344778888999999998
Q ss_pred CCcccCC--------h----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCcc
Q 022296 122 VGSLEIP--------E----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEI 189 (299)
Q Consensus 122 dGti~i~--------~----~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (299)
..+-++- . +.-.+.|+.+++.|+.| +|+..+. . ..
T Consensus 94 ~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v--~~~~ed~-----~--------------------------r~ 140 (488)
T PRK09389 94 VPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIV--ELSGEDA-----S--------------------------RA 140 (488)
T ss_pred EccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEE--EEEEeeC-----C--------------------------CC
Confidence 8765542 2 23345678888888764 3444211 0 01
Q ss_pred chhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccC
Q 022296 190 EVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 190 ~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~ 239 (299)
+++.+ ++.++...++||+.|. |+|..|-..+..+.+++..+-
T Consensus 141 ~~~~l---~~~~~~~~~~Ga~~i~-----l~DTvG~~~P~~~~~lv~~l~ 182 (488)
T PRK09389 141 DLDFL---KELYKAGIEAGADRIC-----FCDTVGILTPEKTYELFKRLS 182 (488)
T ss_pred CHHHH---HHHHHHHHhCCCCEEE-----EecCCCCcCHHHHHHHHHHHH
Confidence 26677 7888888999999864 688999999888888876653
No 185
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=84.79 E-value=6.2 Score=35.43 Aligned_cols=97 Identities=21% Similarity=0.305 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHh-CCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC-ccc---CChhHHHHHHHHHHHc-C
Q 022296 70 PFIEEVVKRAHQ-HDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG-SLE---IPEETLLRYVRLVKSA-G 143 (299)
Q Consensus 70 ~~l~eKI~l~~~-~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdG-ti~---i~~~~r~~lI~~~~~~-G 143 (299)
+.+.+.++.+|+ .++.+.++.- ..++ ...+.+.|+|+|-++.+ ... ........+++.+++. +
T Consensus 105 ~~~~~~i~~~~~~~~i~vi~~v~----------t~ee-~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~ 173 (221)
T PRK01130 105 ETLAELVKRIKEYPGQLLMADCS----------TLEE-GLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVG 173 (221)
T ss_pred CCHHHHHHHHHhCCCCeEEEeCC----------CHHH-HHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCC
Confidence 468889999999 8888776521 1222 24577889999977532 211 1112224567776664 4
Q ss_pred CcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecccccc
Q 022296 144 LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCK 221 (299)
Q Consensus 144 ~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d 221 (299)
..|....|++ + .+.+++.+++||+-|++=+ .|++
T Consensus 174 iPvia~GGI~----------------------------------t---------~~~~~~~l~~GadgV~iGs-ai~~ 207 (221)
T PRK01130 174 CPVIAEGRIN----------------------------------T---------PEQAKKALELGAHAVVVGG-AITR 207 (221)
T ss_pred CCEEEECCCC----------------------------------C---------HHHHHHHHHCCCCEEEEch-HhcC
Confidence 4444444441 1 3444888999999999853 3655
No 186
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=84.63 E-value=13 Score=33.00 Aligned_cols=101 Identities=21% Similarity=0.219 Sum_probs=56.0
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccc
Q 022296 100 PSAFKEYVEDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRA 166 (299)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti-------------~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~ 166 (299)
|+.+.+..+.+++.|||.|||+-|+- .=..+.-.++|+.+++. +..-+.+|...+
T Consensus 66 ~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~---~~~~v~vk~r~~--------- 133 (231)
T cd02801 66 PETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREA---VPIPVTVKIRLG--------- 133 (231)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHh---cCCCEEEEEeec---------
Confidence 34555666777888999999997651 12333445677777653 101245543211
Q ss_pred ccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecccccc-CCCcccHHHHHHHHh
Q 022296 167 FGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCK-HADSLRADIIAKVIG 236 (299)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d-~~G~~r~d~i~~ii~ 236 (299)
|. + .++. ++.++...++|+++|.+-++.-.. ..+....+.+.++.+
T Consensus 134 ---------~~----------~--~~~~---~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~ 180 (231)
T cd02801 134 ---------WD----------D--EEET---LELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKE 180 (231)
T ss_pred ---------cC----------C--chHH---HHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHh
Confidence 10 0 0134 566677778899999997762111 122334455555544
No 187
>PRK04302 triosephosphate isomerase; Provisional
Probab=84.60 E-value=9.6 Score=34.54 Aligned_cols=46 Identities=17% Similarity=0.077 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022296 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
-+.+.+.++++|.++|-+-+.--.++.++-.++++.+++.|+.++-
T Consensus 74 g~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~ 119 (223)
T PRK04302 74 GHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVV 119 (223)
T ss_pred hhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEE
Confidence 4456899999999999998876668888888999999999998763
No 188
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=84.60 E-value=13 Score=36.71 Aligned_cols=89 Identities=12% Similarity=0.168 Sum_probs=61.3
Q ss_pred ccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc-----
Q 022296 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL----- 125 (299)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti----- 125 (299)
.-|+-+=||+||..+++.+.|++.++..+++= +..+. .|+.+.-+|+. -++.++.++++||+.|.|---|.
T Consensus 72 ~~i~siy~GGGTPs~L~~~~L~~ll~~i~~~~-~~~~~--~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L 148 (394)
T PRK08898 72 RQVHTVFIGGGTPSLLSAAGLDRLLSDVRALL-PLDPD--AEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHL 148 (394)
T ss_pred CceeEEEECCCCcCCCCHHHHHHHHHHHHHhC-CCCCC--CeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHH
Confidence 45888999999999999999999999998751 11111 23333333332 25789999999999988855444
Q ss_pred -----cCChhHHHHHHHHHHHcC
Q 022296 126 -----EIPEETLLRYVRLVKSAG 143 (299)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G 143 (299)
.-+.++-.+.|+.+++.+
T Consensus 149 ~~l~R~~~~~~~~~~i~~~~~~~ 171 (394)
T PRK08898 149 KALGRIHDGAEARAAIEIAAKHF 171 (394)
T ss_pred HHhCCCCCHHHHHHHHHHHHHhC
Confidence 123455556777777753
No 189
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=84.50 E-value=10 Score=35.97 Aligned_cols=110 Identities=16% Similarity=0.243 Sum_probs=78.4
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCC
Q 022296 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASN 186 (299)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
+.+++.+|-|+|=+--.. ++.++..++++.+.+.||.++-|++-+
T Consensus 117 I~ea~~~GADavLLI~~~--L~~~~l~~l~~~a~~lGle~LVEVh~~--------------------------------- 161 (247)
T PRK13957 117 IREARAFGASAILLIVRI--LTPSQIKSFLKHASSLGMDVLVEVHTE--------------------------------- 161 (247)
T ss_pred HHHHHHcCCCEEEeEHhh--CCHHHHHHHHHHHHHcCCceEEEECCH---------------------------------
Confidence 567788999999665554 467788899999999999999988651
Q ss_pred CccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCce-EEecCCc-hhHHHHHHHhCCCc
Q 022296 187 PEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEATNP-RTSEWFIRRYGPKV 264 (299)
Q Consensus 187 ~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~ekl-ifEAP~k-~qQ~~fI~~fG~~V 264 (299)
+++ ++.+++||..|-|..|.+..- ++..+...+++..+|-+.+ |-|.=-+ ..+...+++. .|-
T Consensus 162 -----~El-------~~a~~~ga~iiGINnRdL~t~--~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~da 226 (247)
T PRK13957 162 -----DEA-------KLALDCGAEIIGINTRDLDTF--QIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VDA 226 (247)
T ss_pred -----HHH-------HHHHhCCCCEEEEeCCCCccc--eECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CCE
Confidence 223 778999999999999977443 4456667888888886665 4454422 2344445554 443
Q ss_pred cc
Q 022296 265 NL 266 (299)
Q Consensus 265 NL 266 (299)
-|
T Consensus 227 vL 228 (247)
T PRK13957 227 AL 228 (247)
T ss_pred EE
Confidence 33
No 190
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=84.45 E-value=5.7 Score=37.36 Aligned_cols=122 Identities=11% Similarity=0.071 Sum_probs=76.5
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCC
Q 022296 99 GPSAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (299)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~ 175 (299)
+.+.+.++++++.+.|.+.|=+.-.| ..|+.++|.++++.+.+.-=+| =+|+ |.
T Consensus 18 D~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~v--i~gv-------g~-------------- 74 (279)
T cd00953 18 DKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDKV--IFQV-------GS-------------- 74 (279)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCCE--EEEe-------Cc--------------
Confidence 34578899999999999999886543 5799999999999888742111 1222 10
Q ss_pred CccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccC-CCcccHHHHHHHHhccCCCceEEecCCch---
Q 022296 176 RSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKH-ADSLRADIIAKVIGRLGLEKTMFEATNPR--- 251 (299)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~-~G~~r~d~i~~ii~~l~~eklifEAP~k~--- 251 (299)
.+.++. ++.++..-++|||.|++=.--.|.. +-+--.+-...|++ ++.=++...|...
T Consensus 75 -------------~~~~~a---i~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~--~lpv~iYn~P~~tg~~ 136 (279)
T cd00953 75 -------------LNLEES---IELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS--PYPTFIYNYPKATGYD 136 (279)
T ss_pred -------------CCHHHH---HHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh--cCCEEEEeCccccCCC
Confidence 114556 8999999999999999866433331 11111222334444 5556777777422
Q ss_pred hHHHHHHHhC
Q 022296 252 TSEWFIRRYG 261 (299)
Q Consensus 252 qQ~~fI~~fG 261 (299)
.-...+.++-
T Consensus 137 l~~~~l~~L~ 146 (279)
T cd00953 137 INARMAKEIK 146 (279)
T ss_pred CCHHHHHHHH
Confidence 2234555554
No 191
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=84.11 E-value=5 Score=38.55 Aligned_cols=47 Identities=15% Similarity=0.362 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHcCCCEEEec------CCcc-------cCChhHHHHHHHHHHHcCCcccc
Q 022296 102 AFKEYVEDCKQVGFDTIELN------VGSL-------EIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEIS------dGti-------~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
.++.|++.+|++||..|-=- ||.. -|.-+.=.++|++|++.||...|
T Consensus 96 ~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~ 155 (268)
T PF09370_consen 96 DMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTA 155 (268)
T ss_dssp -HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--
T ss_pred cHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeee
Confidence 58899999999999887522 2222 34555667899999998887444
No 192
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=83.73 E-value=21 Score=29.52 Aligned_cols=96 Identities=13% Similarity=0.065 Sum_probs=52.5
Q ss_pred HHHHHHHhhccc-ccEEEeeCcccccCChhHH--HHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 022296 42 VLEDIFESMGQF-VDGLKFSGGSHSLMPKPFI--EEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (299)
Q Consensus 42 ~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l--~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~I 118 (299)
...+..+.+.+. +|++-++.-.......... +....+.+..++++......-... +.+....+.+++.|+|.|
T Consensus 13 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~g~d~v 88 (200)
T cd04722 13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAA----AAVDIAAAAARAAGADGV 88 (200)
T ss_pred HHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCch----hhhhHHHHHHHHcCCCEE
Confidence 334444444443 8888888644333322112 124455666777655532210000 011122468999999999
Q ss_pred EecCCcccCChhHHHHHHHHHHHc
Q 022296 119 ELNVGSLEIPEETLLRYVRLVKSA 142 (299)
Q Consensus 119 EISdGti~i~~~~r~~lI~~~~~~ 142 (299)
+|..+....+ +.-.++++.+++.
T Consensus 89 ~l~~~~~~~~-~~~~~~~~~i~~~ 111 (200)
T cd04722 89 EIHGAVGYLA-REDLELIRELREA 111 (200)
T ss_pred EEeccCCcHH-HHHHHHHHHHHHh
Confidence 9999886553 3334667777764
No 193
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=83.72 E-value=8.5 Score=35.83 Aligned_cols=140 Identities=21% Similarity=0.296 Sum_probs=86.4
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhC--CceecCCcHHHHHHHhCCchHHHHHHHHHHcC----C
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVG----F 115 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lG----F 115 (299)
.+-+.|..+| ||.+=+|+.. .-|.+. +.++.+++. ++.+. .|. +. -.+.++.+.+.| +
T Consensus 24 ~i~~~L~~~G--v~~iEvg~~~--~~~~~~--~~~~~l~~~~~~~~~~--~l~-----r~---~~~~v~~a~~~~~~~~~ 87 (268)
T cd07940 24 EIARQLDELG--VDVIEAGFPA--ASPGDF--EAVKRIAREVLNAEIC--GLA-----RA---VKKDIDAAAEALKPAKV 87 (268)
T ss_pred HHHHHHHHcC--CCEEEEeCCC--CCHHHH--HHHHHHHHhCCCCEEE--EEc-----cC---CHhhHHHHHHhCCCCCC
Confidence 4445566677 7888887633 233332 555555543 33222 121 21 133355555566 9
Q ss_pred CEEEecCCccc--------CCh----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcc
Q 022296 116 DTIELNVGSLE--------IPE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFL 183 (299)
Q Consensus 116 ~~IEISdGti~--------i~~----~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~ 183 (299)
+.|-+....-+ .+. +.-.+.|+.+++.|++|. |+..+. +
T Consensus 88 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~~~~----~----------------------- 138 (268)
T cd07940 88 DRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE--FSAEDA----T----------------------- 138 (268)
T ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE--EeeecC----C-----------------------
Confidence 99999775422 222 344578899999998754 333210 0
Q ss_pred cCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 184 ASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 184 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
..+++.+ .+.+++..++||+.| .|.|..|...++.+.++++.+
T Consensus 139 ----~~~~~~~---~~~~~~~~~~G~~~i-----~l~DT~G~~~P~~v~~lv~~l 181 (268)
T cd07940 139 ----RTDLDFL---IEVVEAAIEAGATTI-----NIPDTVGYLTPEEFGELIKKL 181 (268)
T ss_pred ----CCCHHHH---HHHHHHHHHcCCCEE-----EECCCCCCCCHHHHHHHHHHH
Confidence 0226777 888899999999876 478999999999998888754
No 194
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=83.59 E-value=2.2 Score=41.09 Aligned_cols=40 Identities=15% Similarity=0.291 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc------CChhHHHHHHHHHHH
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLE------IPEETLLRYVRLVKS 141 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~------i~~~~r~~lI~~~~~ 141 (299)
..-++.+.+.+.|.|+||||.|..+ ++......+.+.+++
T Consensus 242 e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~ 287 (336)
T cd02932 242 DSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQ 287 (336)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHh
Confidence 3446666777889999999988542 223333456666666
No 195
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=83.57 E-value=24 Score=35.21 Aligned_cols=52 Identities=19% Similarity=0.303 Sum_probs=32.3
Q ss_pred HHHHHHHHccCcEEEEeccccccCCCcccHH--HHHHHHhccCCCce--EEecCCchh
Q 022296 199 RRAERCLEAGADMIMIDSDDVCKHADSLRAD--IIAKVIGRLGLEKT--MFEATNPRT 252 (299)
Q Consensus 199 ~~~~~dLeAGA~~VIiEargi~d~~G~~r~d--~i~~ii~~l~~ekl--ifEAP~k~q 252 (299)
+.+...+++||+.|++ ++.|+++. ++++- .+.+.+++..+-|+ .|+.|.++.
T Consensus 174 ~n~~~~l~aGAdgv~v-GsaI~~~~-d~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 229 (430)
T PRK07028 174 ETAAKAVAAGADIVIV-GGNIIKSA-DVTEAARKIREAIDSGKPVKIDKFKKSLDEEI 229 (430)
T ss_pred HHHHHHHHcCCCEEEE-ChHHcCCC-CHHHHHHHHHHHHhccCCccccccccCCCHHH
Confidence 4458889999998876 45588764 44322 23344455444443 688887754
No 196
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=83.30 E-value=18 Score=34.12 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=19.6
Q ss_pred hhhhhhhHHHHHHHHHccCcEEEEecc
Q 022296 191 VGVGINKSRRAERCLEAGADMIMIDSD 217 (299)
Q Consensus 191 ~~~~~~~i~~~~~dLeAGA~~VIiEar 217 (299)
.++. ++.++..-++|+++|-+=++
T Consensus 227 ~~e~---~~la~~l~~~G~d~i~vs~g 250 (327)
T cd02803 227 LEEA---IEIAKALEEAGVDALHVSGG 250 (327)
T ss_pred HHHH---HHHHHHHHHcCCCEEEeCCC
Confidence 5666 78888889999999988655
No 197
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=83.24 E-value=2.1 Score=40.84 Aligned_cols=48 Identities=17% Similarity=0.305 Sum_probs=39.6
Q ss_pred HHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEec
Q 022296 198 SRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEA 247 (299)
Q Consensus 198 i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEA 247 (299)
.+++++.|++||++|||=+--+. ++.+..+++.++++++|.++|+.=-
T Consensus 94 ~e~i~~~l~~Ga~rViigT~Av~--~~~~~p~~v~~~~~~~G~~~Ivvsi 141 (262)
T PLN02446 94 SENAMSYLDAGASHVIVTSYVFR--DGQIDLERLKDLVRLVGKQRLVLDL 141 (262)
T ss_pred HHHHHHHHHcCCCEEEEchHHHh--CCCCCHHHHHHHHHHhCCCCEEEEE
Confidence 46779999999999999554443 4788899999999999999988733
No 198
>PRK06801 hypothetical protein; Provisional
Probab=82.95 E-value=39 Score=32.55 Aligned_cols=174 Identities=16% Similarity=0.232 Sum_probs=100.5
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceec----CCc--------HHHHHH--HhC---C----
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGD--------WAEHLI--RNG---P---- 100 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~----~Gt--------lfE~a~--~qg---~---- 100 (299)
.++++|..|-+- +++-|.+-+++-+.++..|+-|.+.+.++. +|+ +...+. .+. |
T Consensus 5 ~~~~~l~~A~~~----~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lH 80 (286)
T PRK06801 5 SLANGLAHARKH----GYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIPVVLN 80 (286)
T ss_pred cHHHHHHHHHHC----CceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 455666555332 456666677777777777777776665442 121 111110 000 0
Q ss_pred ---chHHHHHHHHHHcCCCEEEecCCcccCChhHHH----HHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccC
Q 022296 101 ---SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLL----RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (299)
Q Consensus 101 ---~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~----~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~ 173 (299)
...-+.++.|-+.||+.|=+ ||+- +|.++-. ++.+.++..|.-|--|+|. ||..++. ....+
T Consensus 81 lDH~~~~e~i~~Ai~~GftSVm~-D~S~-l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~------vgg~e~~---v~~~~ 149 (286)
T PRK06801 81 LDHGLHFEAVVRALRLGFSSVMF-DGST-LEYEENVRQTREVVKMCHAVGVSVEAELGA------VGGDEGG---ALYGE 149 (286)
T ss_pred CCCCCCHHHHHHHHHhCCcEEEE-cCCC-CCHHHHHHHHHHHHHHHHHcCCeEEeecCc------ccCCCCC---cccCC
Confidence 12346788888999999999 4443 4555544 4566677888877777776 2222221 00000
Q ss_pred CCCccchhcccCCCccchhhhhhhHHHHHHHH-HccCcEEEEecc----ccccCCCcccHHHHHHHHhccCCCceEEec
Q 022296 174 APRSTDKLFLASNPEIEVGVGINKSRRAERCL-EAGADMIMIDSD----DVCKHADSLRADIIAKVIGRLGLEKTMFEA 247 (299)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dL-eAGA~~VIiEar----gi~d~~G~~r~d~i~~ii~~l~~eklifEA 247 (299)
... +. .| + .++++++. +.|+|++=+ += |.|+..-.+.-+.+.+|-+.++.--++-=.
T Consensus 150 ~~~-~~-----~T---~-------pe~a~~f~~~tgvD~LAv-aiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGG 211 (286)
T PRK06801 150 ADS-AK-----FT---D-------PQLARDFVDRTGIDALAV-AIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGG 211 (286)
T ss_pred ccc-cc-----CC---C-------HHHHHHHHHHHCcCEEEe-ccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECC
Confidence 000 00 11 1 34557777 689999999 63 789876679999999998876543344333
No 199
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=82.94 E-value=6.7 Score=33.24 Aligned_cols=148 Identities=17% Similarity=0.213 Sum_probs=81.8
Q ss_pred HHHHHHcCCCEEEecCCcccCCh---hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcc
Q 022296 107 VEDCKQVGFDTIELNVGSLEIPE---ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFL 183 (299)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~---~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~ 183 (299)
|+.++++||+.||++-....... ++..++.+.+++.|+++..--...+.........+ +.+- .+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~--------~~~~-r~---- 67 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGS--------ANDE-RE---- 67 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTT--------SSSH-HH----
T ss_pred ChHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccC--------cchh-hH----
Confidence 57899999999999987765554 57778999999999995553222221110000000 0000 00
Q ss_pred cCCCccchhhhhhhHHHHHHHHHccCcEEEEeccc--cccCCCc--cc---H---HHHHHHHhccCCCceEEecCC----
Q 022296 184 ASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDD--VCKHADS--LR---A---DIIAKVIGRLGLEKTMFEATN---- 249 (299)
Q Consensus 184 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEarg--i~d~~G~--~r---~---d~i~~ii~~l~~eklifEAP~---- 249 (299)
-.++.+ .+.++.+=+.|+.+|++-+-. ....... .. . ..+.++++..|+ ++.+|--.
T Consensus 68 -----~~~~~~---~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~i~lE~~~~~~~ 138 (213)
T PF01261_consen 68 -----EALEYL---KKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGV-RIALENHPGPFS 138 (213)
T ss_dssp -----HHHHHH---HHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTS-EEEEE-SSSSSS
T ss_pred -----HHHHHH---HHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcc-eEEEecccCccc
Confidence 114455 444444445599999998541 1111110 00 1 222233344453 47777432
Q ss_pred --c---hhHHHHHHHhC-CCcccccCCCCchhh
Q 022296 250 --P---RTSEWFIRRYG-PKVNLFVDHSQVMDL 276 (299)
Q Consensus 250 --k---~qQ~~fI~~fG-~~VNLgI~~~eVi~L 276 (299)
. .+..++++.++ ++|++.+|..+...-
T Consensus 139 ~~~~~~~~~~~~l~~~~~~~~~i~~D~~h~~~~ 171 (213)
T PF01261_consen 139 ETPFSVEEIYRLLEEVDSPNVGICFDTGHLIMA 171 (213)
T ss_dssp SEESSHHHHHHHHHHHTTTTEEEEEEHHHHHHT
T ss_pred cchhhHHHHHHHHhhcCCCcceEEEehHHHHHc
Confidence 2 56789999999 567776766665533
No 200
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=82.92 E-value=15 Score=37.03 Aligned_cols=37 Identities=24% Similarity=0.472 Sum_probs=24.3
Q ss_pred HHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 199 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 199 ~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
+.++..+++||+.+++ ||.||.+.. ..+.++++.+.+
T Consensus 342 eti~~l~~aGADivVV-GsaIf~a~D--p~~aak~l~~~i 378 (391)
T PRK13307 342 ENVEEALKAGADILVV-GRAITKSKD--VRRAAEDFLNKL 378 (391)
T ss_pred HHHHHHHHcCCCEEEE-eHHHhCCCC--HHHHHHHHHHhh
Confidence 3457889999997766 677997653 244455555443
No 201
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=82.91 E-value=10 Score=35.99 Aligned_cols=115 Identities=22% Similarity=0.276 Sum_probs=79.5
Q ss_pred HHHH-HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 103 FKEY-VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 103 ~~~y-l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
+++| +.+++..|=|+|=+-... ++.++..++++.+++.||.++-|++-
T Consensus 119 id~~QI~eA~~~GADaVLLI~~~--L~~~~l~~l~~~a~~lGle~lVEVh~----------------------------- 167 (254)
T PF00218_consen 119 IDPYQIYEARAAGADAVLLIAAI--LSDDQLEELLELAHSLGLEALVEVHN----------------------------- 167 (254)
T ss_dssp -SHHHHHHHHHTT-SEEEEEGGG--SGHHHHHHHHHHHHHTT-EEEEEESS-----------------------------
T ss_pred CCHHHHHHHHHcCCCEeehhHHh--CCHHHHHHHHHHHHHcCCCeEEEECC-----------------------------
Confidence 3444 678999999999887665 55677789999999999999998865
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCce-EEecCCc-hhHHHHHHH
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEATNP-RTSEWFIRR 259 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~ekl-ifEAP~k-~qQ~~fI~~ 259 (299)
.+++ ++.+++||+.|-|-.|.+-.- ++..+...+++..+|.+.+ |-|.=-+ ..+...+.+
T Consensus 168 ---------~~El-------~~al~~~a~iiGINnRdL~tf--~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~ 229 (254)
T PF00218_consen 168 ---------EEEL-------ERALEAGADIIGINNRDLKTF--EVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLAR 229 (254)
T ss_dssp ---------HHHH-------HHHHHTT-SEEEEESBCTTTC--CBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCT
T ss_pred ---------HHHH-------HHHHHcCCCEEEEeCccccCc--ccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHH
Confidence 1233 778899999999999976433 3445566778888885543 4455433 457777777
Q ss_pred hCCCccc
Q 022296 260 YGPKVNL 266 (299)
Q Consensus 260 fG~~VNL 266 (299)
.|.|-=|
T Consensus 230 ~G~davL 236 (254)
T PF00218_consen 230 AGADAVL 236 (254)
T ss_dssp TT-SEEE
T ss_pred CCCCEEE
Confidence 7776544
No 202
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=82.85 E-value=14 Score=34.42 Aligned_cols=37 Identities=16% Similarity=0.335 Sum_probs=25.5
Q ss_pred HHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHH
Q 022296 198 SRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVI 235 (299)
Q Consensus 198 i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii 235 (299)
.+++....+||||.+++=+.+||.++.+ ..+.++.+-
T Consensus 180 ~~~i~~~~~aGad~~V~Gss~iF~~~~d-~~~~i~~l~ 216 (229)
T PRK09722 180 QKTYEKLMEAGADVFIVGTSGLFNLDED-IDEAWDIMT 216 (229)
T ss_pred HHHHHHHHHcCCCEEEEChHHHcCCCCC-HHHHHHHHH
Confidence 3455888999999999966679974333 455555553
No 203
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=82.84 E-value=30 Score=34.37 Aligned_cols=131 Identities=16% Similarity=0.117 Sum_probs=84.4
Q ss_pred HHHHHHHhCCceecC----C-c----HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHHHH
Q 022296 74 EVVKRAHQHDVYVST----G-D----WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRLVK 140 (299)
Q Consensus 74 eKI~l~~~~gV~v~~----G-t----lfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r----~~lI~~~~ 140 (299)
--..+++++.|+|+. | + |||.++.- +.+++..|.+.||+.|=+.--. +|.++= .+++++++
T Consensus 78 ~v~~~A~~~~VPValHLDHg~~~~~~~~~~~~~a----~~~~~~~a~~~GftSVMiDgS~--lp~eENI~~TkevVe~Ah 151 (345)
T cd00946 78 HVRSMAEHYGVPVVLHTDHCAKKLLPWFDGLLEA----DEEYFKQHGEPLFSSHMLDLSE--EPLEENIEICKKYLERMA 151 (345)
T ss_pred HHHHHHHHCCCCEEEECCCCCCccchhhHHHHHH----HHHHHHHhccCCCceEEeeCCC--CCHHHHHHHHHHHHHHHH
Confidence 334688899998874 5 4 68888765 4689999999999999775443 555543 35677788
Q ss_pred HcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHc-----cCcEEEEe
Q 022296 141 SAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEA-----GADMIMID 215 (299)
Q Consensus 141 ~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeA-----GA~~VIiE 215 (299)
..|.-|--|+|.--+ ..|..... ..+. ..-+| ++++. +++.+. |.|.+=+=
T Consensus 152 ~~gvsVEaElG~igg------~ed~~~~~-~~~~--~~~yT--------dPeeA-------~~Fv~~t~~~tgvD~LAva 207 (345)
T cd00946 152 KINMWLEMEIGITGG------EEDGVDNS-GVDN--AELYT--------QPEDV-------WYVYEALSKISPNFSIAAA 207 (345)
T ss_pred HcCCEEEEEecccCC------cccCcccc-cccc--cccCC--------CHHHH-------HHHHHHhccCCCceeeeee
Confidence 889999999998321 11210000 0000 00011 24444 777775 87855432
Q ss_pred ---cccccc-CCCcccHHHHHHH
Q 022296 216 ---SDDVCK-HADSLRADIIAKV 234 (299)
Q Consensus 216 ---argi~d-~~G~~r~d~i~~i 234 (299)
+-|+|. ..-+++-+++++|
T Consensus 208 iGt~HG~Y~~~~p~L~~~~L~~I 230 (345)
T cd00946 208 FGNVHGVYKPGNVKLQPEILGEH 230 (345)
T ss_pred ccccccCCCCCCCccCHHHHHHH
Confidence 239998 4778999999999
No 204
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=82.84 E-value=5 Score=37.27 Aligned_cols=91 Identities=13% Similarity=0.084 Sum_probs=56.1
Q ss_pred HHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeee
Q 022296 75 VVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (299)
Q Consensus 75 KI~l~~~~gV-~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK 153 (299)
-++...+++| .|.-+.=.|. .-+..+.+.+-|+++|||.--+ ..-.+.|+.+++ +++.+
T Consensus 8 ~~~~l~~~~vi~Vvr~~~~~~--------a~~~~~al~~gGi~~iEiT~~t-----p~a~~~i~~l~~-------~~~~~ 67 (222)
T PRK07114 8 VLTAMKATGMVPVFYHADVEV--------AKKVIKACYDGGARVFEFTNRG-----DFAHEVFAELVK-------YAAKE 67 (222)
T ss_pred HHHHHHhCCEEEEEEcCCHHH--------HHHHHHHHHHCCCCEEEEeCCC-----CcHHHHHHHHHH-------HHHhh
Confidence 3466678888 5544643333 3455788999999999997644 334567776654 34443
Q ss_pred cCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEec
Q 022296 154 FNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDS 216 (299)
Q Consensus 154 ~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEa 216 (299)
++.--||. +|- ++ .++++..++|||++++-=+
T Consensus 68 ~p~~~vGa-----------------------GTV-l~-------~e~a~~a~~aGA~FiVsP~ 99 (222)
T PRK07114 68 LPGMILGV-----------------------GSI-VD-------AATAALYIQLGANFIVTPL 99 (222)
T ss_pred CCCeEEee-----------------------EeC-cC-------HHHHHHHHHcCCCEEECCC
Confidence 33222222 110 11 4566999999999999655
No 205
>PRK15452 putative protease; Provisional
Probab=82.81 E-value=27 Score=35.58 Aligned_cols=88 Identities=10% Similarity=0.002 Sum_probs=60.1
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccc------cCChhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHH
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDC 110 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~------l~p~~~l~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~~~~~yl~~~ 110 (299)
.+..++..++.- .|-+=+|+.... -+..+.|++-+++||++|+.+|.- ++..-- ... .+.+|++.+
T Consensus 12 ~~e~l~aAi~~G---ADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~-el~--~~~~~l~~l 85 (443)
T PRK15452 12 TLKNMRYAFAYG---ADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNA-KLK--TFIRDLEPV 85 (443)
T ss_pred CHHHHHHHHHCC---CCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHH-HHH--HHHHHHHHH
Confidence 555777667654 455555544322 344467999999999999988763 332211 112 688889999
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHc
Q 022296 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (299)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (299)
.++|+|+|=|+| .-+++.+++.
T Consensus 86 ~~~gvDgvIV~d----------~G~l~~~ke~ 107 (443)
T PRK15452 86 IAMKPDALIMSD----------PGLIMMVREH 107 (443)
T ss_pred HhCCCCEEEEcC----------HHHHHHHHHh
Confidence 999999999998 3566777775
No 206
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=82.64 E-value=12 Score=34.88 Aligned_cols=58 Identities=5% Similarity=-0.002 Sum_probs=34.2
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCCh--hHHHHHHHHHHhCCc------eecCCcHHHH
Q 022296 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPK--PFIEEVVKRAHQHDV------YVSTGDWAEH 94 (299)
Q Consensus 27 T~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~--~~l~eKI~l~~~~gV------~v~~GtlfE~ 94 (299)
++.+|-+|=+.-..++++.+.+.-+++|-+ +.| ..+.+-++..|++|+ -+.|+|-+|.
T Consensus 68 ~~~~DvHLMv~~P~~~i~~~~~aGad~It~----------H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~ 133 (228)
T PRK08091 68 HCFKDVHLMVRDQFEVAKACVAAGADIVTL----------QVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISL 133 (228)
T ss_pred CCCEEEEeccCCHHHHHHHHHHhCCCEEEE----------cccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHH
Confidence 345677774443445666666665555532 222 246777888888876 5567776553
No 207
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=82.57 E-value=22 Score=33.19 Aligned_cols=120 Identities=19% Similarity=0.149 Sum_probs=72.5
Q ss_pred ChhHHHHHHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHH---HHHHHcCCCEEEecCCc-------------ccCChh
Q 022296 68 PKPFIEEVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYV---EDCKQVGFDTIELNVGS-------------LEIPEE 130 (299)
Q Consensus 68 p~~~l~eKI~l~~~~gV-~v~~GtlfE~a~~qg~~~~~~yl---~~~k~lGF~~IEISdGt-------------i~i~~~ 130 (299)
|++++.+-+..+++... .+.-|+ +..++|+ +.|.+ +++.|||+-|+ +--.++
T Consensus 53 ~~~~i~~e~~~~~~~~~vivnv~~----------~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~ 121 (231)
T TIGR00736 53 FNSYIIEQIKKAESRALVSVNVRF----------VDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKE 121 (231)
T ss_pred HHHHHHHHHHHHhhcCCEEEEEec----------CCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHH
Confidence 45777777777764443 233332 1222222 23333 79999999887 334677
Q ss_pred HHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCc
Q 022296 131 TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGAD 210 (299)
Q Consensus 131 ~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~ 210 (299)
.-.++++.+++.+ +| +.+|-... .+ .... ++.++...++||+
T Consensus 122 ~l~~iv~av~~~~---~P-VsvKiR~~-----~~--------------------------~~~~---~~~a~~l~~aGad 163 (231)
T TIGR00736 122 LLKEFLTKMKELN---KP-IFVKIRGN-----CI--------------------------PLDE---LIDALNLVDDGFD 163 (231)
T ss_pred HHHHHHHHHHcCC---Cc-EEEEeCCC-----CC--------------------------cchH---HHHHHHHHHcCCC
Confidence 7788888888653 33 77773321 00 1122 5667888999999
Q ss_pred EEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 211 MIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 211 ~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
.|.|+++ |...+....+.|.++.+.+
T Consensus 164 ~i~Vd~~--~~g~~~a~~~~I~~i~~~~ 189 (231)
T TIGR00736 164 GIHVDAM--YPGKPYADMDLLKILSEEF 189 (231)
T ss_pred EEEEeeC--CCCCchhhHHHHHHHHHhc
Confidence 9999753 3322325667777776655
No 208
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.51 E-value=19 Score=33.62 Aligned_cols=148 Identities=11% Similarity=0.135 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLE------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~------i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~ 175 (299)
.+.+-++.++++|++++||--..=. ++.++..++.+.+.++++.+.+ +.+..+.. +. +.+|.+
T Consensus 12 ~~~~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~Hapy~-iN---------las~~~ 80 (274)
T TIGR00587 12 GLQAAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNKNLSQI-VLVHAPYL-IN---------LASPDE 80 (274)
T ss_pred CHHHHHHHHHHhCCCEEEEEecCccccCCCCCCHHHHHHHHHHHHHcCCCCcc-eeccCCee-ee---------cCCCCH
Confidence 5677788899999999999544433 4455554444556676665322 22211110 00 001111
Q ss_pred CccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCc----ccHHHHHHHHhccCCCceEEec----
Q 022296 176 RSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADS----LRADIIAKVIGRLGLEKTMFEA---- 247 (299)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~----~r~d~i~~ii~~l~~eklifEA---- 247 (299)
... ..+++.+ .+.++.+-+-||.+|.+..--..+...+ .-.+.+.++++...-=+|..|-
T Consensus 81 ~~r---------~~sv~~~---~~~i~~A~~lga~~vv~H~G~~~~~~~e~~~~~~~~~l~~l~~~~~~v~l~lEN~~~~ 148 (274)
T TIGR00587 81 EKE---------EKSLDVL---DEELKRCELLGIMLYNFHPGSALKCSEEEGLDNLIESLNVVIKETKIVTILLENMAGQ 148 (274)
T ss_pred HHH---------HHHHHHH---HHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHhccCCCEEEEEeCCCC
Confidence 001 1224555 5555666677999999887322222100 0112233344322223588883
Q ss_pred -----CCchhHHHHHHHhC--CCcccccCCCC
Q 022296 248 -----TNPRTSEWFIRRYG--PKVNLFVDHSQ 272 (299)
Q Consensus 248 -----P~k~qQ~~fI~~fG--~~VNLgI~~~e 272 (299)
..+++-..+++.++ +++-+.+|...
T Consensus 149 ~~~l~~~~~el~~ll~~~~~~~~lg~~lDt~H 180 (274)
T TIGR00587 149 GSELGRSFEELAYIIKVIVDKRRIGVCLDTCH 180 (274)
T ss_pred CCccCCCHHHHHHHHHhcCCCCceEEEEEhhh
Confidence 25566789999998 34433344443
No 209
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=82.50 E-value=4 Score=38.12 Aligned_cols=128 Identities=20% Similarity=0.320 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHhCCceecC-C--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc------ccCChhHHHHHHHHH
Q 022296 69 KPFIEEVVKRAHQHDVYVST-G--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS------LEIPEETLLRYVRLV 139 (299)
Q Consensus 69 ~~~l~eKI~l~~~~gV~v~~-G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt------i~i~~~~r~~lI~~~ 139 (299)
.+.+..-=++++.-++++.- + ||-. .|..+.+-++...+.|.-.|-|-|.- --+|.++.+.=|+.+
T Consensus 55 ~e~~~~~~~I~~~~~iPv~vD~d~GyG~-----~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa 129 (238)
T PF13714_consen 55 TEMLAAVRRIARAVSIPVIVDADTGYGN-----DPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAA 129 (238)
T ss_dssp HHHHHHHHHHHHHSSSEEEEE-TTTSSS-----SHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCcEEEEcccccCc-----hhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHH
Confidence 34455555566777888875 2 3422 12256667788889999999999881 135888888888877
Q ss_pred HHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecccc
Q 022296 140 KSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDV 219 (299)
Q Consensus 140 ~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi 219 (299)
++.- -.+.|-+ ... -| +++. .. ...++. |++++...+||||.|.+++-
T Consensus 130 ~~a~--~~~~~~I---~AR----TD----a~~~-----~~---------~~~dea---I~R~~aY~eAGAD~ifi~~~-- 177 (238)
T PF13714_consen 130 VDAR--RDPDFVI---IAR----TD----AFLR-----AE---------EGLDEA---IERAKAYAEAGADMIFIPGL-- 177 (238)
T ss_dssp HHHH--SSTTSEE---EEE----EC----HHCH-----HH---------HHHHHH---HHHHHHHHHTT-SEEEETTS--
T ss_pred HHhc--cCCeEEE---EEe----cc----cccc-----CC---------CCHHHH---HHHHHHHHHcCCCEEEeCCC--
Confidence 7620 0011222 000 11 0000 00 125667 99999999999999999975
Q ss_pred ccCCCcccHHHHHHHHhccC
Q 022296 220 CKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 220 ~d~~G~~r~d~i~~ii~~l~ 239 (299)
...+.++++.+.++
T Consensus 178 ------~~~~~i~~~~~~~~ 191 (238)
T PF13714_consen 178 ------QSEEEIERIVKAVD 191 (238)
T ss_dssp ------SSHHHHHHHHHHHS
T ss_pred ------CCHHHHHHHHHhcC
Confidence 34566888888887
No 210
>PRK12677 xylose isomerase; Provisional
Probab=82.48 E-value=6.3 Score=39.18 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---cCChhH----HHHHHHHHHHcCCccc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL---EIPEET----LLRYVRLVKSAGLKAK 147 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti---~i~~~~----r~~lI~~~~~~G~~v~ 147 (299)
.+.+.++.++++||++||+.+..+ ..+..+ ..++-+.+++.|++|.
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~ 84 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVP 84 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeE
Confidence 578889999999999999986543 223332 4566777788899854
No 211
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=82.46 E-value=14 Score=35.00 Aligned_cols=110 Identities=13% Similarity=0.164 Sum_probs=72.8
Q ss_pred chhHHHHHHHhhcc-cccEEEeeCcccccCChhHHHHHHHHHHhCCc--eecCCcHHHHHHHh--CCchHHHHHHHHHHc
Q 022296 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTGDWAEHLIRN--GPSAFKEYVEDCKQV 113 (299)
Q Consensus 39 g~~~l~DlLe~ag~-yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV--~v~~GtlfE~a~~q--g~~~~~~yl~~~k~l 113 (299)
.+..+.+.++.+-+ =++-+-|..|.....+.+.+.+.++..++++. .++.=+-.|+.+.. ..-..++.++..|+.
T Consensus 37 s~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeA 116 (309)
T TIGR00423 37 SLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKA 116 (309)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 44454444443222 24666667777766777889999999998853 33333666765322 111358999999999
Q ss_pred CCCEEE-ecCCcc-----------cCChhHHHHHHHHHHHcCCcccc
Q 022296 114 GFDTIE-LNVGSL-----------EIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 114 GF~~IE-ISdGti-----------~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
|.+.+- ++.-+. ..+.+++.+.|+.+++.|+++.+
T Consensus 117 Gl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s 163 (309)
T TIGR00423 117 GLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTA 163 (309)
T ss_pred CCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcee
Confidence 999772 321111 35788999999999999988775
No 212
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=82.44 E-value=8.7 Score=39.42 Aligned_cols=120 Identities=23% Similarity=0.286 Sum_probs=67.9
Q ss_pred HHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCC--ccch----hhhhhhHHHHHHHHH
Q 022296 133 LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNP--EIEV----GVGINKSRRAERCLE 206 (299)
Q Consensus 133 ~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~i~~~~~dLe 206 (299)
+-+++.++++|++|.| |.+ |+ | ||.|. +. +.+++.. .+++ ++. |++.-..=.
T Consensus 19 ~glm~aL~~rg~~Vqp-fKv-------GP--D-----YIDP~-~H---~~atG~~srNLD~~mm~~~~---v~~~f~~~~ 76 (451)
T COG1797 19 LGLMRALRRRGLKVQP-FKV-------GP--D-----YIDPG-YH---TAATGRPSRNLDSWMMGEEG---VRALFARAA 76 (451)
T ss_pred HHHHHHHHhcCCcccc-ccc-------CC--C-----ccCch-hh---hHhhCCccCCCchhhcCHHH---HHHHHHHhc
Confidence 3588999999999988 544 11 1 33332 10 0111111 1111 233 555555556
Q ss_pred ccCcEEEEec-cccccCCCc-ccHHHHHHHHhccC-CCceEEecCCchh----HHHHHHHhCCCcccc-cCCCCch
Q 022296 207 AGADMIMIDS-DDVCKHADS-LRADIIAKVIGRLG-LEKTMFEATNPRT----SEWFIRRYGPKVNLF-VDHSQVM 274 (299)
Q Consensus 207 AGA~~VIiEa-rgi~d~~G~-~r~d~i~~ii~~l~-~eklifEAP~k~q----Q~~fI~~fG~~VNLg-I~~~eVi 274 (299)
++||..|||+ .|+||..+. ..+.--+.+++.++ +=-++.-+....+ .++=++.|-|+||+. |=.+.|-
T Consensus 77 ~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~s~S~AAiv~G~~~fdp~v~iaGVIlNrVg 152 (451)
T COG1797 77 ADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGLSRSVAAIVKGFKHFDPDVNIAGVILNRVG 152 (451)
T ss_pred CCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhCCCEEEEEeCcchhHHHHHHHHHHHhcCCCCceEEEEEecCC
Confidence 7889999999 599999321 11222344444455 3335556665555 345568999999995 6555443
No 213
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=82.24 E-value=16 Score=39.44 Aligned_cols=111 Identities=18% Similarity=0.170 Sum_probs=85.6
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCC
Q 022296 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASN 186 (299)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
+.+++.+|-|+|=+-...+ +.++..++++.+++.||.|+-|++-
T Consensus 126 I~ea~~~GADavLLI~~~L--~~~~l~~l~~~a~~lGme~LvEvh~---------------------------------- 169 (695)
T PRK13802 126 IWEARAHGADLVLLIVAAL--DDAQLKHLLDLAHELGMTVLVETHT---------------------------------- 169 (695)
T ss_pred HHHHHHcCCCEeehhHhhc--CHHHHHHHHHHHHHcCCeEEEEeCC----------------------------------
Confidence 6789999999999887776 4788999999999999999998865
Q ss_pred CccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCce-EEecCCc-hhHHHHHHHhCCCc
Q 022296 187 PEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEATNP-RTSEWFIRRYGPKV 264 (299)
Q Consensus 187 ~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~ekl-ifEAP~k-~qQ~~fI~~fG~~V 264 (299)
.+++ ++.+++||..|-|-.|.+-.- ++..+.-.+|+..+|-+.+ |-|.=-+ ..+...+.+.|.|-
T Consensus 170 ----~~el-------~~a~~~ga~iiGINnRdL~tf--~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~da 236 (695)
T PRK13802 170 ----REEI-------ERAIAAGAKVIGINARNLKDL--KVDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADA 236 (695)
T ss_pred ----HHHH-------HHHHhCCCCEEEEeCCCCccc--eeCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCE
Confidence 1233 778999999999999977443 4446667778888886655 4455433 46777788888776
Q ss_pred cc
Q 022296 265 NL 266 (299)
Q Consensus 265 NL 266 (299)
=|
T Consensus 237 vL 238 (695)
T PRK13802 237 VL 238 (695)
T ss_pred EE
Confidence 55
No 214
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=82.16 E-value=1.9 Score=39.34 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=35.3
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022296 95 LIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 95 a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
++.+. .+++.++.+++.||+.||+.. ... .+..++-+.+++.|+++..
T Consensus 11 ~~~~~--~l~~~l~~~a~~Gf~~VEl~~-~~~---~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 11 LFGEY--DFLARFEKAAQCGFRGVEFMF-PYD---YDIEELKQVLASNKLEHTL 58 (258)
T ss_pred hccCC--CHHHHHHHHHHhCCCEEEEcC-CCC---CCHHHHHHHHHHcCCcEEE
Confidence 44555 799999999999999999954 222 2445666677789999743
No 215
>smart00642 Aamy Alpha-amylase domain.
Probab=82.05 E-value=3.4 Score=36.16 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=37.0
Q ss_pred HHHHHHHHcCCCEEEecCCcc-----------------cC-----ChhHHHHHHHHHHHcCCcccceeeee
Q 022296 105 EYVEDCKQVGFDTIELNVGSL-----------------EI-----PEETLLRYVRLVKSAGLKAKPKFAVM 153 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti-----------------~i-----~~~~r~~lI~~~~~~G~~v~~E~gvK 153 (299)
+-+.+++++||++|.++-=+- .+ +.++..++|+.++++|++|.-.+-..
T Consensus 23 ~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 23 EKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 335577889999998764211 11 23889999999999999999998774
No 216
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=81.56 E-value=27 Score=34.06 Aligned_cols=24 Identities=29% Similarity=0.248 Sum_probs=18.7
Q ss_pred hhhhhhhHHHHHHHHHccCcEEEEecc
Q 022296 191 VGVGINKSRRAERCLEAGADMIMIDSD 217 (299)
Q Consensus 191 ~~~~~~~i~~~~~dLeAGA~~VIiEar 217 (299)
+++. ++.++..-++|+|+|-|=++
T Consensus 226 ~~e~---~~i~~~l~~~gvD~i~vs~g 249 (337)
T PRK13523 226 VQDY---VQYAKWMKEQGVDLIDVSSG 249 (337)
T ss_pred HHHH---HHHHHHHHHcCCCEEEeCCC
Confidence 5666 77777777899999998554
No 217
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=81.53 E-value=4.1 Score=38.87 Aligned_cols=78 Identities=15% Similarity=0.217 Sum_probs=54.3
Q ss_pred chhHHHHHHHhhcccccEEE---eeCccc----ccCChhHHHHHHHHHHhCCceecC-Cc-HHHHHHHhCCchHHHHHHH
Q 022296 39 SHNVLEDIFESMGQFVDGLK---FSGGSH----SLMPKPFIEEVVKRAHQHDVYVST-GD-WAEHLIRNGPSAFKEYVED 109 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lK---fg~GTs----~l~p~~~l~eKI~l~~~~gV~v~~-Gt-lfE~a~~qg~~~~~~yl~~ 109 (299)
.+..++..++..+.|---.| +..-|- .+|+.+.|++.-++||+|||+++- |. ++|.+...+ ..+.+|.
T Consensus 107 ~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~-~~~~e~~-- 183 (290)
T PF01212_consen 107 TPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALG-VSLAEIA-- 183 (290)
T ss_dssp -HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHH-HHHHHHH--
T ss_pred CHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhccc-ccHHHHh--
Confidence 78899999999886444444 333333 378889999999999999999999 75 999885444 2344444
Q ss_pred HHHcCCCEEEecC
Q 022296 110 CKQVGFDTIELNV 122 (299)
Q Consensus 110 ~k~lGF~~IEISd 122 (299)
-+||.+=||-
T Consensus 184 ---~~~D~v~~~~ 193 (290)
T PF01212_consen 184 ---AGADSVSFGG 193 (290)
T ss_dssp ---TTSSEEEEET
T ss_pred ---hhCCEEEEEE
Confidence 7899999884
No 218
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=81.47 E-value=13 Score=39.45 Aligned_cols=97 Identities=14% Similarity=0.126 Sum_probs=74.1
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccch
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDK 180 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~ 180 (299)
+-++.|++.+.+.|+|.+-|-|..-+++.-.. .|+.+++.|..+..-+-.. .| |
T Consensus 96 ~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~--~i~~~k~~G~~~~~~i~yt--~s---------------p------- 149 (596)
T PRK14042 96 DVVRAFVKLAVNNGVDVFRVFDALNDARNLKV--AIDAIKSHKKHAQGAICYT--TS---------------P------- 149 (596)
T ss_pred HHHHHHHHHHHHcCCCEEEEcccCcchHHHHH--HHHHHHHcCCEEEEEEEec--CC---------------C-------
Confidence 36888999999999999999998888877765 8999999998765442221 11 1
Q ss_pred hcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 181 LFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 181 ~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
-.+++.+ ++.++.-.++||+.|- |.|..|-.....+.+++..+
T Consensus 150 -------~~t~e~~---~~~ak~l~~~Gad~I~-----IkDtaG~l~P~~v~~lv~al 192 (596)
T PRK14042 150 -------VHTLDNF---LELGKKLAEMGCDSIA-----IKDMAGLLTPTVTVELYAGL 192 (596)
T ss_pred -------CCCHHHH---HHHHHHHHHcCCCEEE-----eCCcccCCCHHHHHHHHHHH
Confidence 0226778 8889999999998764 67888888888777777654
No 219
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=81.47 E-value=20 Score=29.41 Aligned_cols=99 Identities=21% Similarity=0.375 Sum_probs=73.4
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhC--Ccee--cC-CcHHHHHHHhCCchHHHHHHHHHHcCCC
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYV--ST-GDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v--~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~ 116 (299)
..+...+....++..+=|++|...+.+ .+.+.++.+++. ++.+ .+ |..+ + ++.++.+.+.|++
T Consensus 33 ~~~~~~~~~~~~~~~i~~~ggep~~~~--~~~~~i~~~~~~~~~~~~~i~T~~~~~------~----~~~~~~l~~~g~~ 100 (204)
T cd01335 33 ILDIVLEAKERGVEVVILTGGEPLLYP--ELAELLRRLKKELPGFEISIETNGTLL------T----EELLKELKELGLD 100 (204)
T ss_pred HHHHHHHHHhcCceEEEEeCCcCCccH--hHHHHHHHHHhhCCCceEEEEcCcccC------C----HHHHHHHHhCCCc
Confidence 344455556677888889999999988 788999999988 5544 44 2222 2 5677888888999
Q ss_pred EEEecCCccc-----------CChhHHHHHHHHHHHcCCcccceeee
Q 022296 117 TIELNVGSLE-----------IPEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 117 ~IEISdGti~-----------i~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
.|.+|--+.+ .+.++..+.|+++++.|..+.+.+-+
T Consensus 101 ~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 147 (204)
T cd01335 101 GVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLV 147 (204)
T ss_pred eEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEE
Confidence 9999877653 34478888999999988887776655
No 220
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=81.22 E-value=17 Score=37.85 Aligned_cols=119 Identities=16% Similarity=0.162 Sum_probs=87.0
Q ss_pred HHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 022296 73 EEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (299)
Q Consensus 73 ~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (299)
.+-+++++++|..|..+ .||+ +++.+|+.+.++++.+.+.|-+.|=|.|-.--+.+.+-.++|+.++++ +. .+.+
T Consensus 125 ~~~v~~ak~~g~~V~~~~e~f~D-~~r~~~~~l~~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~-~~-~~~i 201 (526)
T TIGR00977 125 YDTVAYLKRQGDEVIYDAEHFFD-GYKANPEYALATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRS-LK-QPQL 201 (526)
T ss_pred HHHHHHHHHcCCeEEEEeeeeee-cccCCHHHHHHHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHh-CC-CCEE
Confidence 45588999999987643 3533 334566789999999999999999999998888999999999999874 22 2346
Q ss_pred eeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccH
Q 022296 151 AVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRA 228 (299)
Q Consensus 151 gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~ 228 (299)
++.+.. | .... +-.....++|||+. ||+- ||=+..||..-
T Consensus 202 ~vH~HN-------D--------------------------~GlA---vANslaAv~AGA~~--Vd~TinGiGERaGNa~L 243 (526)
T TIGR00977 202 GIHAHN-------D--------------------------SGTA---VANSLLAVEAGATM--VQGTINGYGERCGNANL 243 (526)
T ss_pred EEEECC-------C--------------------------CChH---HHHHHHHHHhCCCE--EEEecccccCccCCCcH
Confidence 664321 1 2233 55667899999997 5664 88888888765
Q ss_pred HHHH
Q 022296 229 DIIA 232 (299)
Q Consensus 229 d~i~ 232 (299)
..+.
T Consensus 244 e~v~ 247 (526)
T TIGR00977 244 CSLI 247 (526)
T ss_pred HHHH
Confidence 5443
No 221
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=81.18 E-value=23 Score=33.92 Aligned_cols=159 Identities=15% Similarity=0.119 Sum_probs=99.3
Q ss_pred HHHHHHhh-cccccEEEeeCcccccCChh-----------HHHHHHHHHHhCCcee-cCC-c--H-HHHHHHhCCchHHH
Q 022296 43 LEDIFESM-GQFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYV-STG-D--W-AEHLIRNGPSAFKE 105 (299)
Q Consensus 43 l~DlLe~a-g~yID~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV~v-~~G-t--l-fE~a~~qg~~~~~~ 105 (299)
++.-+++. |-=.+.+.+-..+|-.+.+. .+++-+++++++|..+ +++ + | .|.+-.-+++.+.+
T Consensus 81 ie~a~~~~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr~~~~~l~~ 160 (284)
T cd07942 81 IERTFEALRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSDTELDFALE 160 (284)
T ss_pred HHHHHHHhCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCCCCHHHHHH
Confidence 44445442 22223566666666444332 3667888999998741 111 0 1 23343445567888
Q ss_pred HHHHHHHc---C---CCEEEecCCcccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccccCCCCcc
Q 022296 106 YVEDCKQV---G---FDTIELNVGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (299)
Q Consensus 106 yl~~~k~l---G---F~~IEISdGti~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~ 178 (299)
+++.+.+. | .+.|-++|-.--..+.+-.++|+.+++. +-....++++.+.. |
T Consensus 161 ~~~~~~~~~~~g~~~~~~i~laDTvG~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hn-------d-------------- 219 (284)
T cd07942 161 VCEAVIDVWQPTPENKIILNLPATVEVATPNVYADQIEWFCRNLSRRESVIISLHPHN-------D-------------- 219 (284)
T ss_pred HHHHHHHhhcCCCCcceEEEccccccccCHHHHHHHHHHHHHhcCCCCCceEEEEecC-------C--------------
Confidence 88888887 5 4488899999888888888999998873 11112235553221 1
Q ss_pred chhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhccC
Q 022296 179 DKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~l~ 239 (299)
.... +..+-..++|||+.| ++- |+=...||.-.+.+-..+...+
T Consensus 220 ------------~G~a---~AN~laA~~aG~~~i--d~~~~g~GeRaGN~~~E~lv~~l~~~g 265 (284)
T cd07942 220 ------------RGTG---VAAAELALLAGADRV--EGTLFGNGERTGNVDLVTLALNLYSQG 265 (284)
T ss_pred ------------CchH---HHHHHHHHHhCCCEE--EeeCccCCccccchhHHHHHHHHHhcC
Confidence 2334 667788999999985 554 7755589988887766665444
No 222
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=81.09 E-value=7.6 Score=37.68 Aligned_cols=116 Identities=18% Similarity=0.254 Sum_probs=79.4
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhccccc-EEEeeCcccccCChhHHHHHHHHHHhCCc-eecCC--cHHHHHH-HhC--
Q 022296 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVD-GLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLI-RNG-- 99 (299)
Q Consensus 27 T~V~DkGl~~~~g~~~l~DlLe~ag~yID-~lKfg~GTs~l~p~~~l~eKI~l~~~~gV-~v~~G--tlfE~a~-~qg-- 99 (299)
|.-++-|-+....+..++++++..-.++. ...+ |.-..|...-.++++.++++|| .++-| ++=+..+ .-|
T Consensus 54 ~iyfGGGTPs~l~~~~l~~ll~~i~~~~~~~~ei---tiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~ 130 (350)
T PRK08446 54 SVFIGGGTPSTVSAKFYEPIFEIISPYLSKDCEI---TTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRI 130 (350)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhcCCCceE---EEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC
Confidence 56666665533378889999999887721 1222 2234465566899999999999 88888 6755444 223
Q ss_pred --CchHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHcCCc
Q 022296 100 --PSAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (299)
Q Consensus 100 --~~~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~G~~ 145 (299)
.+.+.+-++.+++.||+.| -+-=|.-.-+.+++.+-++.+.+.|..
T Consensus 131 ~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~~l~~~ 180 (350)
T PRK08446 131 HSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKELPIN 180 (350)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHHhcCCC
Confidence 1245556778889999854 555555566778888889998887654
No 223
>PRK12999 pyruvate carboxylase; Reviewed
Probab=81.05 E-value=13 Score=42.14 Aligned_cols=102 Identities=18% Similarity=0.241 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
.+++|++.+.+.|+|.+-|.|..-++ +.....|+.+++.|..+...++.. .++ -| |+. .
T Consensus 628 v~~~~i~~a~~~Gid~~rifd~lnd~--~~~~~~i~~vk~~g~~~~~~i~yt---g~~---~d--------~~~--~--- 686 (1146)
T PRK12999 628 VVRAFVREAAAAGIDVFRIFDSLNWV--ENMRVAIDAVRETGKIAEAAICYT---GDI---LD--------PAR--A--- 686 (1146)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCChH--HHHHHHHHHHHHcCCeEEEEEEEE---ecC---CC--------CCC--C---
Confidence 57789999999999999999988886 446678999999988655445442 011 11 110 0
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
..+++.+ ++.++.-.++||+.|- |.|..|-+....+.++++.+
T Consensus 687 ------~~~~~~~---~~~a~~l~~~Ga~~i~-----ikDt~G~l~P~~~~~lv~~l 729 (1146)
T PRK12999 687 ------KYDLDYY---VDLAKELEKAGAHILA-----IKDMAGLLKPAAAYELVSAL 729 (1146)
T ss_pred ------CCCHHHH---HHHHHHHHHcCCCEEE-----ECCccCCCCHHHHHHHHHHH
Confidence 0236777 8888999999999664 67788888888777777654
No 224
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=80.68 E-value=26 Score=33.33 Aligned_cols=112 Identities=17% Similarity=0.298 Sum_probs=74.4
Q ss_pred cCCCCCCcchhHHHHHHHhhcc-cccEEEeeCccc-ccCChhHHHHH-----------------HHHHH--hCCceecCC
Q 022296 31 SPHYTLSSSHNVLEDIFESMGQ-FVDGLKFSGGSH-SLMPKPFIEEV-----------------VKRAH--QHDVYVSTG 89 (299)
Q Consensus 31 DkGl~~~~g~~~l~DlLe~ag~-yID~lKfg~GTs-~l~p~~~l~eK-----------------I~l~~--~~gV~v~~G 89 (299)
=-|| |.+..+.+++..+-+ -+|++=+|+=.| .+.+-..+++- ++-.+ ..++++..=
T Consensus 17 taG~---P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm 93 (259)
T PF00290_consen 17 TAGY---PDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLM 93 (259)
T ss_dssp ETTS---SSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEE
T ss_pred eCCC---CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEE
Confidence 3455 366777777777666 899999997543 12222222222 22222 344555555
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 022296 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 90 tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
|++...+..| +++|++.|++.|++.+=| -+||.|+...+.+.++++|+...+=+..
T Consensus 94 ~Y~N~i~~~G---~e~F~~~~~~aGvdGlIi----pDLP~ee~~~~~~~~~~~gl~~I~lv~p 149 (259)
T PF00290_consen 94 TYYNPIFQYG---IERFFKEAKEAGVDGLII----PDLPPEESEELREAAKKHGLDLIPLVAP 149 (259)
T ss_dssp E-HHHHHHH----HHHHHHHHHHHTEEEEEE----TTSBGGGHHHHHHHHHHTT-EEEEEEET
T ss_pred eeccHHhccc---hHHHHHHHHHcCCCEEEE----cCCChHHHHHHHHHHHHcCCeEEEEECC
Confidence 7888888886 999999999999998877 4688899999999999998886664443
No 225
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=80.38 E-value=57 Score=31.34 Aligned_cols=134 Identities=16% Similarity=0.258 Sum_probs=83.0
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhc
Q 022296 105 EYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLF 182 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~ 182 (299)
+.+..|-+.||+.|=+....+++.+-- =.++++.++..|.-|--|+|.=-+ ..|.. ... ...+|
T Consensus 83 ~~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g------~e~~~------~~~-~~~~T- 148 (276)
T cd00947 83 ELIKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGG------EEDGV------VGD-EGLLT- 148 (276)
T ss_pred HHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecC------ccCCc------ccc-cccCC-
Confidence 556677899999999986665443322 246788899999999999998321 11110 000 01111
Q ss_pred ccCCCccchhhhhhhHHHHHHHHHc-cCcEEEEec---cccccC-CCcccHHHHHHHHhccCCCceEEecC-Cc-hhHHH
Q 022296 183 LASNPEIEVGVGINKSRRAERCLEA-GADMIMIDS---DDVCKH-ADSLRADIIAKVIGRLGLEKTMFEAT-NP-RTSEW 255 (299)
Q Consensus 183 ~~~~~~~~~~~~~~~i~~~~~dLeA-GA~~VIiEa---rgi~d~-~G~~r~d~i~~ii~~l~~eklifEAP-~k-~qQ~~ 255 (299)
+|++. +++.+. |+|.+-+=- -|+|.. .-+++.+++.+|-+.++.--++==+. .+ +|...
T Consensus 149 -------~pe~a-------~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ 214 (276)
T cd00947 149 -------DPEEA-------EEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRK 214 (276)
T ss_pred -------CHHHH-------HHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHH
Confidence 24444 777764 999876643 389988 77899999999998775333333332 23 33344
Q ss_pred HHHHhC-CCcccc
Q 022296 256 FIRRYG-PKVNLF 267 (299)
Q Consensus 256 fI~~fG-~~VNLg 267 (299)
.|+ +| .+||++
T Consensus 215 ai~-~Gi~KiNi~ 226 (276)
T cd00947 215 AIK-LGVCKININ 226 (276)
T ss_pred HHH-cCCeEEEeC
Confidence 444 44 457775
No 226
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=80.23 E-value=4 Score=29.77 Aligned_cols=45 Identities=20% Similarity=0.297 Sum_probs=34.1
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
...++|++.|++.|+++|=|+|=.---.. .++-+.+++.|++|+|
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~~~~~~---~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHGNLFGA---VEFYKAAKKAGIKPII 59 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCCcccCH---HHHHHHHHHcCCeEEE
Confidence 47899999999999999999997622222 3455666678988876
No 227
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=80.11 E-value=22 Score=34.53 Aligned_cols=21 Identities=24% Similarity=0.080 Sum_probs=16.9
Q ss_pred hhhhhhhHHHHHHHHHccCcEEEE
Q 022296 191 VGVGINKSRRAERCLEAGADMIMI 214 (299)
Q Consensus 191 ~~~~~~~i~~~~~dLeAGA~~VIi 214 (299)
.++. ++.++..-++|+|+|-+
T Consensus 223 ~~e~---~~i~~~Le~~G~d~i~v 243 (353)
T cd02930 223 WEEV---VALAKALEAAGADILNT 243 (353)
T ss_pred HHHH---HHHHHHHHHcCCCEEEe
Confidence 5666 77777777899999988
No 228
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=80.09 E-value=23 Score=32.79 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=23.8
Q ss_pred HHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHH
Q 022296 198 SRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVI 235 (299)
Q Consensus 198 i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii 235 (299)
.+.++...+||||.+++ |+.||.++ + ..+.++++-
T Consensus 182 ~eti~~l~~aGaDi~V~-GSaiF~~~-d-~~~~~~~lr 216 (223)
T PRK08745 182 ADNIGAIAAAGADTFVA-GSAIFNAP-D-YAQVIAQMR 216 (223)
T ss_pred HHHHHHHHHcCCCEEEE-ChhhhCCC-C-HHHHHHHHH
Confidence 44568899999998888 56799754 3 344455443
No 229
>PRK10425 DNase TatD; Provisional
Probab=80.06 E-value=53 Score=30.78 Aligned_cols=170 Identities=18% Similarity=0.191 Sum_probs=101.8
Q ss_pred CCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCC----hhHHHHHHHHHHhCCceecCC--c--HH-
Q 022296 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMP----KPFIEEVVKRAHQHDVYVSTG--D--WA- 92 (299)
Q Consensus 22 R~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p----~~~l~eKI~l~~~~gV~v~~G--t--lf- 92 (299)
+..|+.-++.+|. .+...+..++.+..|=+ +..+.|-+.-+- ++.+++..+++++..| +.-| | +.
T Consensus 25 ~~~gv~~~i~~~~----~~~~~~~~~~l~~~~~~-v~~~~GiHP~~~~~~~~~~~~~l~~~~~~~~~-vaIGEiGLDy~~ 98 (258)
T PRK10425 25 FAAGVNGMLITGT----NLRESQQAQKLARQYPS-CWSTAGVHPHDSSQWQAATEEAIIELAAQPEV-VAIGECGLDFNR 98 (258)
T ss_pred HHCCCCEEEEeCC----CHHHHHHHHHHHHhCCC-EEEEEEeCcCccccCCHHHHHHHHHhccCCCE-EEEeeeeecccc
Confidence 3558889999999 56689999999988854 888888876442 3334444444443332 2334 2 22
Q ss_pred --H-HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 022296 93 --E-HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (299)
Q Consensus 93 --E-~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~ 169 (299)
+ ...++. -|+..++.|++++...+==|-+.. + ++++.+++..-+ .+. ++-...+ +
T Consensus 99 ~~~~~~~Q~~--vF~~ql~lA~~~~~Pv~iH~r~a~----~---~~l~iL~~~~~~-~~~-~i~H~fs-----G------ 156 (258)
T PRK10425 99 NFSTPEEQER--AFVAQLAIAAELNMPVFMHCRDAH----E---RFMALLEPWLDK-LPG-AVLHCFT-----G------ 156 (258)
T ss_pred CCCCHHHHHH--HHHHHHHHHHHhCCCeEEEEeCch----H---HHHHHHHHhccC-CCC-eEEEecC-----C------
Confidence 1 112333 799999999999998874444332 3 344444442101 111 2211111 1
Q ss_pred cccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecCC
Q 022296 170 YVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATN 249 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP~ 249 (299)
+ .+.+++.++.|.+.=+- --++... +...+.++++.+|+++|+.|...
T Consensus 157 ------------------~---------~~~~~~~l~~G~~~si~--g~i~~~~---~~~~~~~~~~~ipldrlLlETDa 204 (258)
T PRK10425 157 ------------------T---------REEMQACLARGLYIGIT--GWVCDER---RGLELRELLPLIPAERLLLETDA 204 (258)
T ss_pred ------------------C---------HHHHHHHHHCCCEEEEC--ceeeccc---ccHHHHHHHHhCChHHEEEeccC
Confidence 1 44568899999776441 1122211 34467788899999999999876
Q ss_pred ch
Q 022296 250 PR 251 (299)
Q Consensus 250 k~ 251 (299)
|-
T Consensus 205 P~ 206 (258)
T PRK10425 205 PY 206 (258)
T ss_pred CC
Confidence 53
No 230
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=79.81 E-value=22 Score=34.30 Aligned_cols=95 Identities=14% Similarity=0.141 Sum_probs=55.4
Q ss_pred HHHHHHcCCCEEEecCCccc-------------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccC
Q 022296 107 VEDCKQVGFDTIELNVGSLE-------------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (299)
Q Consensus 107 l~~~k~lGF~~IEISdGti~-------------i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~ 173 (299)
.+.+.+.||+.|||+=|+=. -.++.-.++++.+++. .. +| +++|... |
T Consensus 83 a~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a-~d-~p-v~vKiR~---G------------- 143 (321)
T PRK10415 83 ARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNA-VD-VP-VTLKIRT---G------------- 143 (321)
T ss_pred HHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHh-cC-Cc-eEEEEEc---c-------------
Confidence 34456789999999999631 1144555667766653 10 12 6665321 1
Q ss_pred CCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc---ccccCCCcccHHHHHHHHhcc
Q 022296 174 APRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD---DVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar---gi~d~~G~~r~d~i~~ii~~l 238 (299)
|..+ .... ++.++..-++|++.|.+-+| +.|. |....+.+.++.+.+
T Consensus 144 --~~~~-----------~~~~---~~~a~~le~~G~d~i~vh~rt~~~~~~--G~a~~~~i~~ik~~~ 193 (321)
T PRK10415 144 --WAPE-----------HRNC---VEIAQLAEDCGIQALTIHGRTRACLFN--GEAEYDSIRAVKQKV 193 (321)
T ss_pred --ccCC-----------cchH---HHHHHHHHHhCCCEEEEecCccccccC--CCcChHHHHHHHHhc
Confidence 1000 1223 56667778999999999998 3443 333445666665544
No 231
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=79.79 E-value=20 Score=36.87 Aligned_cols=146 Identities=16% Similarity=0.112 Sum_probs=89.4
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (299)
.+-+.|..+| ||.+=.||-.+.=.+.+.+++..+..+ +..++ .|. +-.+..++.-++..++.+.+.|-+.
T Consensus 27 ~ia~~L~~~G--V~~IEvG~p~~s~~d~e~v~~i~~~~~--~~~i~--al~----r~~~~did~a~~al~~~~~~~v~i~ 96 (494)
T TIGR00973 27 QIALALERLG--VDIIEAGFPVSSPGDFEAVQRIARTVK--NPRVC--GLA----RCVEKDIDAAAEALKPAEKFRIHTF 96 (494)
T ss_pred HHHHHHHHcC--CCEEEEECCCCCHHHHHHHHHHHHhCC--CCEEE--EEc----CCCHHhHHHHHHhccccCCCEEEEE
Confidence 5556777888 899999986654333444543333222 22222 121 1112245555555556688888887
Q ss_pred CCccc--------CChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCcc
Q 022296 122 VGSLE--------IPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEI 189 (299)
Q Consensus 122 dGti~--------i~~~~----r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (299)
-.+-+ .+.++ -.+.|+.+++.|+. .+|+-.+.. ..
T Consensus 97 ~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~--v~f~~Ed~~-------------------------------r~ 143 (494)
T TIGR00973 97 IATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDD--VEFSCEDAG-------------------------------RT 143 (494)
T ss_pred EccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe--EEEEcCCCC-------------------------------CC
Confidence 66533 23333 23688888998875 244432110 12
Q ss_pred chhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 190 EVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 190 ~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
+++.+ ++.++...++||+.| .|+|..|-..++.+.++++.+
T Consensus 144 d~~~l---~~~~~~~~~~Ga~~i-----~l~DTvG~~~P~~~~~~i~~l 184 (494)
T TIGR00973 144 EIPFL---ARIVEAAINAGATTI-----NIPDTVGYALPAEYGNLIKGL 184 (494)
T ss_pred CHHHH---HHHHHHHHHcCCCEE-----EeCCCCCCCCHHHHHHHHHHH
Confidence 26778 888999999999865 478999999998888888654
No 232
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=79.61 E-value=61 Score=31.25 Aligned_cols=196 Identities=12% Similarity=0.151 Sum_probs=109.1
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecC----CcH----HHH----HH--HhC---C----
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST----GDW----AEH----LI--RNG---P---- 100 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~----Gtl----fE~----a~--~qg---~---- 100 (299)
.++++|..|-+- +++-|.+-+++-+.++.-|+-|.+.+.++-. |+. +|. +. .+. |
T Consensus 5 ~~k~il~~A~~~----~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lH 80 (284)
T PRK09195 5 STKQMLNNAQRG----GYAVPAFNIHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALH 80 (284)
T ss_pred cHHHHHHHHHHc----CceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 445555554332 4566666677777777777777766654421 110 111 10 010 0
Q ss_pred ---chHHHHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCC
Q 022296 101 ---SAFKEYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (299)
Q Consensus 101 ---~~~~~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~ 175 (299)
..=-+.+..|-++||+.|=+..-.+++.+-- =+++++.++..|.-|--|+|.=-+ ++|.. ....
T Consensus 81 LDHg~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg------~e~~~-----~~~~ 149 (284)
T PRK09195 81 LDHHEKFDDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGG------QEDDL-----QVDE 149 (284)
T ss_pred CCCCCCHHHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccC------cccCc-----cccc
Confidence 0113567788899999999976654443322 236778888889999999988311 11200 0000
Q ss_pred CccchhcccCCCccchhhhhhhHHHHHHHHH-ccCcEEEEec---cccccCCCcccHHHHHHHHhccCCCceEEecC-Cc
Q 022296 176 RSTDKLFLASNPEIEVGVGINKSRRAERCLE-AGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGLEKTMFEAT-NP 250 (299)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLe-AGA~~VIiEa---rgi~d~~G~~r~d~i~~ii~~l~~eklifEAP-~k 250 (299)
-...+| +|+ +++++.+ -|+|..-|== -|+|...-+++-|.+.+|-+.++.-=++==+. .|
T Consensus 150 ~~~~~T--------~pe-------ea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~ 214 (284)
T PRK09195 150 ADALYT--------DPA-------QAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLVLHGASGLP 214 (284)
T ss_pred ccccCC--------CHH-------HHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeEEecCCCCC
Confidence 000111 144 4477776 5998776543 39999888999999999988765332333222 23
Q ss_pred hhHHHHHHHhC-CCcccc
Q 022296 251 RTSEWFIRRYG-PKVNLF 267 (299)
Q Consensus 251 ~qQ~~fI~~fG-~~VNLg 267 (299)
..|.-=.-+.| .+||++
T Consensus 215 ~e~~~~ai~~Gi~KiNi~ 232 (284)
T PRK09195 215 TKDIQQTIKLGICKVNVA 232 (284)
T ss_pred HHHHHHHHHcCCeEEEeC
Confidence 33332223344 467776
No 233
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=79.59 E-value=10 Score=35.80 Aligned_cols=144 Identities=22% Similarity=0.289 Sum_probs=89.6
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhH-------HHHHHHHHHh--CCceecCCcHHHHHHHhCCchHH--HHHHHH
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPF-------IEEVVKRAHQ--HDVYVSTGDWAEHLIRNGPSAFK--EYVEDC 110 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~-------l~eKI~l~~~--~gV~v~~GtlfE~a~~qg~~~~~--~yl~~~ 110 (299)
.....+..+..=+||+|+|. ++-.. ++..++.+++ .+..+..-.|.... .-| .++ +..+.+
T Consensus 69 ~~~aa~~~a~~GvdyvKvGl-----~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~-r~~--~~~p~~l~~~a 140 (235)
T PF04476_consen 69 ASLAALGAAATGVDYVKVGL-----FGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQ-RVG--SISPLDLPEIA 140 (235)
T ss_pred HHHHHHHHHhcCCCEEEEec-----CCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchh-hhc--CCCHHHHHHHH
Confidence 34556666666799999995 33222 3333333333 34555555565533 223 333 457899
Q ss_pred HHcCCCEEEecCC-----c--ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcc
Q 022296 111 KQVGFDTIELNVG-----S--LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFL 183 (299)
Q Consensus 111 k~lGF~~IEISdG-----t--i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~ 183 (299)
++.||+.+=|... + --++.++..++++.++++|+. .+. . |+
T Consensus 141 ~~aG~~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~----~aL----A--GS---------------------- 188 (235)
T PF04476_consen 141 AEAGFDGVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGLM----CAL----A--GS---------------------- 188 (235)
T ss_pred HHcCCCEEEEecccCCCCchhhcCCHHHHHHHHHHHHHccch----hhc----c--cc----------------------
Confidence 9999999988643 2 268999999999999998665 333 1 11
Q ss_pred cCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccC----CCcccHHHHHHHHhcc
Q 022296 184 ASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKH----ADSLRADIIAKVIGRL 238 (299)
Q Consensus 184 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~----~G~~r~d~i~~ii~~l 238 (299)
+..+.+ ..-..-|.|++=+=+- +|.. .|.++.+.|.++-+.+
T Consensus 189 -----L~~~di-------~~L~~l~pD~lGfRGA-vC~ggdR~~G~id~~~V~~lr~~~ 234 (235)
T PF04476_consen 189 -----LRFEDI-------PRLKRLGPDILGFRGA-VCGGGDRRAGRIDPELVAALRALM 234 (235)
T ss_pred -----CChhHH-------HHHHhcCCCEEEechh-hCCCCCcCccccCHHHHHHHHHhc
Confidence 112222 4445678888755332 5655 3789999999887644
No 234
>PRK15108 biotin synthase; Provisional
Probab=79.57 E-value=11 Score=36.81 Aligned_cols=131 Identities=17% Similarity=0.282 Sum_probs=67.1
Q ss_pred cCChhHHHHHHHHHHhCCc-eecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcC
Q 022296 66 LMPKPFIEEVVKRAHQHDV-YVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAG 143 (299)
Q Consensus 66 l~p~~~l~eKI~l~~~~gV-~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G 143 (299)
+++.+.+.++...+.+.|+ .++.| +|.+- ....-+.+.+-++.+|+.|...+ +|.|. ++. +..++++++|
T Consensus 75 ~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p-~~~~~e~i~~~i~~ik~~~i~v~-~s~G~--ls~----e~l~~LkeAG 146 (345)
T PRK15108 75 LMEVEQVLESARKAKAAGSTRFCMGAAWKNP-HERDMPYLEQMVQGVKAMGLETC-MTLGT--LSE----SQAQRLANAG 146 (345)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEecCCCC-CcchHHHHHHHHHHHHhCCCEEE-EeCCc--CCH----HHHHHHHHcC
Confidence 4555667777777778888 55444 34211 11111135555666677776544 77774 333 3445566777
Q ss_pred CcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCC
Q 022296 144 LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHA 223 (299)
Q Consensus 144 ~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~ 223 (299)
+.. +++.. |+.+ ..|..+.++. +.+++ ++.++...++|- -+-+-+|+--
T Consensus 147 ld~---~n~~l---eT~p---~~f~~I~~~~---------------~~~~r---l~~i~~a~~~G~---~v~sg~i~Gl- 195 (345)
T PRK15108 147 LDY---YNHNL---DTSP---EFYGNIITTR---------------TYQER---LDTLEKVRDAGI---KVCSGGIVGL- 195 (345)
T ss_pred CCE---Eeecc---ccCh---HhcCCCCCCC---------------CHHHH---HHHHHHHHHcCC---ceeeEEEEeC-
Confidence 762 22311 1100 0111111111 13333 788888888884 2223345554
Q ss_pred CcccHHHHHHHH
Q 022296 224 DSLRADIIAKVI 235 (299)
Q Consensus 224 G~~r~d~i~~ii 235 (299)
|+..+|.++-+.
T Consensus 196 gEt~ed~v~~~~ 207 (345)
T PRK15108 196 GETVKDRAGLLL 207 (345)
T ss_pred CCCHHHHHHHHH
Confidence 777777777665
No 235
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=79.52 E-value=15 Score=33.76 Aligned_cols=76 Identities=8% Similarity=0.189 Sum_probs=50.9
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecC------C-cHHHHHHHhCCchHHHHHHHHH
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST------G-DWAEHLIRNGPSAFKEYVEDCK 111 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~------G-tlfE~a~~qg~~~~~~yl~~~k 111 (299)
....++.+.+.|-+| ++.+-.++|. .++.--++++..+|.+++ | .-.|.-+.+ .++|-
T Consensus 16 t~~~i~~lc~~A~~~------~~~avcv~p~-~v~~a~~~l~~~~v~v~tVigFP~G~~~~~~K~~E--------~~~Av 80 (211)
T TIGR00126 16 TEEDIITLCAQAKTY------KFAAVCVNPS-YVPLAKELLKGTEVRICTVVGFPLGASTTDVKLYE--------TKEAI 80 (211)
T ss_pred CHHHHHHHHHHHHhh------CCcEEEeCHH-HHHHHHHHcCCCCCeEEEEeCCCCCCCcHHHHHHH--------HHHHH
Confidence 566888888888877 7777667664 577666677777887764 4 244444333 36688
Q ss_pred HcCCCEEEecCCcccCCh
Q 022296 112 QVGFDTIELNVGSLEIPE 129 (299)
Q Consensus 112 ~lGF~~IEISdGti~i~~ 129 (299)
+.|-|.|.+--..-.+-.
T Consensus 81 ~~GAdEiDvv~n~g~l~~ 98 (211)
T TIGR00126 81 KYGADEVDMVINIGALKD 98 (211)
T ss_pred HcCCCEEEeecchHhhhC
Confidence 899999998655443333
No 236
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=79.49 E-value=31 Score=33.31 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEI 127 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i 127 (299)
.+.+..+.+.+.|.|+|-+++.+..+
T Consensus 176 ~~~~~a~~l~~~Gadgi~~~nt~~~~ 201 (325)
T cd04739 176 ALAHMAKQLDAAGADGLVLFNRFYQP 201 (325)
T ss_pred CHHHHHHHHHHcCCCeEEEEcCcCCC
Confidence 57788889999999999999987443
No 237
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=79.34 E-value=41 Score=32.25 Aligned_cols=143 Identities=15% Similarity=0.062 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCcc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~ 178 (299)
.+.+.++++-+-|.+.|=+.-.| ..++.++|.++++.+++. .+.+-+.
T Consensus 26 a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~-------~~grvpv---------------------- 76 (299)
T COG0329 26 ALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEA-------VGGRVPV---------------------- 76 (299)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHH-------HCCCCcE----------------------
Confidence 57778888889999988775544 379999999999999993 3221110
Q ss_pred chhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecCCch---hHHH
Q 022296 179 DKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPR---TSEW 255 (299)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP~k~---qQ~~ 255 (299)
.+|+...+.++. |+.++..-++|||-|++=.-=.+....+---+-...|++..++.-++.--|... --..
T Consensus 77 ----iaG~g~~~t~ea---i~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e 149 (299)
T COG0329 77 ----IAGVGSNSTAEA---IELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPE 149 (299)
T ss_pred ----EEecCCCcHHHH---HHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHH
Confidence 000011124556 999999999999999997754444443333344556666666666777777333 2344
Q ss_pred HHHHhCCCccc-c--cCCCCchhhhhhh
Q 022296 256 FIRRYGPKVNL-F--VDHSQVMDLECLR 280 (299)
Q Consensus 256 fI~~fG~~VNL-g--I~~~eVi~LE~LR 280 (299)
++.++-..=|+ | -+-.++-.++.+|
T Consensus 150 ~i~~la~~~nivgiKd~~gd~~~~~~~~ 177 (299)
T COG0329 150 TIARLAEHPNIVGVKDSSGDLDRLEEII 177 (299)
T ss_pred HHHHHhcCCCEEEEEeCCcCHHHHHHHH
Confidence 55555543355 3 3344555555553
No 238
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=79.22 E-value=15 Score=35.82 Aligned_cols=124 Identities=17% Similarity=0.237 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-----------CChhHHHHH
Q 022296 70 PFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-----------IPEETLLRY 135 (299)
Q Consensus 70 ~~l~eKI~l~~~~gV~v~~---GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~-----------i~~~~r~~l 135 (299)
+.+..-=++..--+++|.- .||-| + . .+-+.++.+.+.|.-.|-|-|-... +|.++-++-
T Consensus 65 e~~~~vrrI~~a~~lPv~vD~dtGfG~-~--~---nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~r 138 (289)
T COG2513 65 EVLADARRITDAVDLPVLVDIDTGFGE-A--L---NVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDR 138 (289)
T ss_pred HHHHHHHHHHhhcCCceEEeccCCCCc-H--H---HHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHH
Confidence 3445555556666776664 24655 1 1 5667888899999998888776664 888888888
Q ss_pred HHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEe
Q 022296 136 VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMID 215 (299)
Q Consensus 136 I~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiE 215 (299)
|+-+++. +..+.|-+- .. -| + +..+ - .+.. |++++.++|||||+|-+|
T Consensus 139 IkAa~~a--~~~~~fvi~---AR----Td-a---------~~~~--------~--ld~A---I~Ra~AY~eAGAD~if~~ 186 (289)
T COG2513 139 IKAAVEA--RRDPDFVII---AR----TD-A---------LLVE--------G--LDDA---IERAQAYVEAGADAIFPE 186 (289)
T ss_pred HHHHHHh--ccCCCeEEE---ee----hH-H---------HHhc--------c--HHHH---HHHHHHHHHcCCcEEccc
Confidence 8888874 122455552 11 11 0 0000 0 3555 999999999999999999
Q ss_pred ccccccCCCcccHHHHHHHHhccC
Q 022296 216 SDDVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 216 argi~d~~G~~r~d~i~~ii~~l~ 239 (299)
+. .. .+.+.++.+.+.
T Consensus 187 al------~~--~e~i~~f~~av~ 202 (289)
T COG2513 187 AL------TD--LEEIRAFAEAVP 202 (289)
T ss_pred cC------CC--HHHHHHHHHhcC
Confidence 86 11 556666666555
No 239
>PRK08185 hypothetical protein; Provisional
Probab=79.22 E-value=61 Score=31.23 Aligned_cols=174 Identities=16% Similarity=0.259 Sum_probs=97.1
Q ss_pred EeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHH---
Q 022296 58 KFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLR--- 134 (299)
Q Consensus 58 Kfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~--- 134 (299)
-++-|+...++.+...--..+++++.|+|.. -+-++ .=.+.++.|-+.||+.|=+..-. +|.++-.+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~l------HLDHg--~~~e~i~~ai~~Gf~SVM~D~S~--l~~eeNi~~t~ 112 (283)
T PRK08185 43 AIHPNELDFLGDNFFAYVRERAKRSPVPFVI------HLDHG--ATIEDVMRAIRCGFTSVMIDGSL--LPYEENVALTK 112 (283)
T ss_pred EeCcchhhhccHHHHHHHHHHHHHCCCCEEE------ECCCC--CCHHHHHHHHHcCCCEEEEeCCC--CCHHHHHHHHH
Confidence 3344444334444444445566666666553 00111 11245667778999999887654 56666554
Q ss_pred -HHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHc-cCcEE
Q 022296 135 -YVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEA-GADMI 212 (299)
Q Consensus 135 -lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeA-GA~~V 212 (299)
+++.++..|..|--|+|. -+.. .+. ..+ ..++ .+....++++++.+. |+|++
T Consensus 113 ~vv~~a~~~gv~vE~ElG~-vg~~-----e~~---~~~----~~~~-------------~~~t~peea~~f~~~TgvD~L 166 (283)
T PRK08185 113 EVVELAHKVGVSVEGELGT-IGNT-----GTS---IEG----GVSE-------------IIYTDPEQAEDFVSRTGVDTL 166 (283)
T ss_pred HHHHHHHHcCCeEEEEEee-ccCc-----ccc---ccc----cccc-------------ccCCCHHHHHHHHHhhCCCEE
Confidence 455556779999888887 2221 110 000 0000 000114555889988 99998
Q ss_pred EEe---ccccccC--CCcccHHHHHHHHhccCCCceEEecC-CchhHHHHHHHhC-CCcccc
Q 022296 213 MID---SDDVCKH--ADSLRADIIAKVIGRLGLEKTMFEAT-NPRTSEWFIRRYG-PKVNLF 267 (299)
Q Consensus 213 IiE---argi~d~--~G~~r~d~i~~ii~~l~~eklifEAP-~k~qQ~~fI~~fG-~~VNLg 267 (299)
-+= +-|+|.. .-+++-+.+.+|-+.++.-=++-=.. .+..|.-=.-+.| ..||++
T Consensus 167 AvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~ 228 (283)
T PRK08185 167 AVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVLHGGSANPDAEIAESVQLGVGKINIS 228 (283)
T ss_pred EeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCCCeEEEeC
Confidence 883 3589987 45788999999987765433333332 2333333233444 456665
No 240
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=79.10 E-value=26 Score=32.21 Aligned_cols=101 Identities=19% Similarity=0.220 Sum_probs=67.9
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCce----ec-----CCcHHHHH
Q 022296 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY----VS-----TGDWAEHL 95 (299)
Q Consensus 25 GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~----v~-----~GtlfE~a 95 (299)
++....|=|+ + ....++.+|+.-.+ |.+.||+++.+++.+++.++.+.+. |. +. .-||-+
T Consensus 75 ~~pv~vgGGi--r-s~edv~~~l~~Ga~-----kvviGs~~l~~p~l~~~i~~~~~~~-i~vsld~~~~~v~~~Gw~~-- 143 (241)
T PRK14024 75 DVKVELSGGI--R-DDESLEAALATGCA-----RVNIGTAALENPEWCARVIAEHGDR-VAVGLDVRGHTLAARGWTR-- 143 (241)
T ss_pred CCCEEEcCCC--C-CHHHHHHHHHCCCC-----EEEECchHhCCHHHHHHHHHHhhhh-EEEEEEEeccEeccCCeee--
Confidence 4555566665 3 66677777776444 7899999999999999998888654 32 21 124543
Q ss_pred HHhCCchHHHHHHHHHHcCCCEEEecCC----cccCChhHHHHHHHHHHHc
Q 022296 96 IRNGPSAFKEYVEDCKQVGFDTIELNVG----SLEIPEETLLRYVRLVKSA 142 (299)
Q Consensus 96 ~~qg~~~~~~yl~~~k~lGF~~IEISdG----ti~i~~~~r~~lI~~~~~~ 142 (299)
... ...++.+.+.+.|++.+=+-+= +..=+ + .++|+.+++.
T Consensus 144 -~~~--~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~--d-~~~i~~i~~~ 188 (241)
T PRK14024 144 -DGG--DLWEVLERLDSAGCSRYVVTDVTKDGTLTGP--N-LELLREVCAR 188 (241)
T ss_pred -cCc--cHHHHHHHHHhcCCCEEEEEeecCCCCccCC--C-HHHHHHHHhh
Confidence 222 6788999999999998877543 33322 2 4677777763
No 241
>PRK04302 triosephosphate isomerase; Provisional
Probab=79.00 E-value=29 Score=31.38 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=13.4
Q ss_pred HHHHHHHccCcEEEEecc
Q 022296 200 RAERCLEAGADMIMIDSD 217 (299)
Q Consensus 200 ~~~~dLeAGA~~VIiEar 217 (299)
.+++.+++|||-|+|=+-
T Consensus 187 ~~~~~~~~gadGvlVGsa 204 (223)
T PRK04302 187 DVKAALELGADGVLLASG 204 (223)
T ss_pred HHHHHHcCCCCEEEEehH
Confidence 347778899999988443
No 242
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=78.83 E-value=7.1 Score=36.80 Aligned_cols=93 Identities=13% Similarity=0.229 Sum_probs=57.0
Q ss_pred HHHHhhcccccEEEeeCccc----ccCChhHHHHHHHHHHhCCceecC--CcH---------HHHHHHhCCc----hHHH
Q 022296 45 DIFESMGQFVDGLKFSGGSH----SLMPKPFIEEVVKRAHQHDVYVST--GDW---------AEHLIRNGPS----AFKE 105 (299)
Q Consensus 45 DlLe~ag~yID~lKfg~GTs----~l~p~~~l~eKI~l~~~~gV~v~~--Gtl---------fE~a~~qg~~----~~~~ 105 (299)
+.++..++.+|.|=.-|-.. .+.+. ...+.++.+|++||++.+ |+| +..++ .++. -++.
T Consensus 17 ~~~~~~~~~lt~v~p~w~~~~~~g~~~~~-~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l-~~~~~r~~fi~~ 94 (313)
T cd02874 17 ESLRANAPYLTYIAPFWYGVDADGTLTGL-PDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVL-SNPEARQRLINN 94 (313)
T ss_pred HHHHHhcCCCCEEEEEEEEEcCCCCCCCC-CCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHh-cCHHHHHHHHHH
Confidence 34555666666654333211 12222 246889999999998886 554 33333 3322 3677
Q ss_pred HHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHH
Q 022296 106 YVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKS 141 (299)
Q Consensus 106 yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~ 141 (299)
.++.+++.|||.|+|.=-. ++.+++..++..+++
T Consensus 95 iv~~l~~~~~DGidiDwE~--~~~~d~~~~~~fl~~ 128 (313)
T cd02874 95 ILALAKKYGYDGVNIDFEN--VPPEDREAYTQFLRE 128 (313)
T ss_pred HHHHHHHhCCCcEEEeccc--CCHHHHHHHHHHHHH
Confidence 8888999999999996433 455666666555544
No 243
>PRK05985 cytosine deaminase; Provisional
Probab=78.76 E-value=10 Score=36.71 Aligned_cols=77 Identities=14% Similarity=0.195 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHhCCceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCC-EEEecCCc--ccCChhHHHHHHHHHHHcC
Q 022296 69 KPFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFD-TIELNVGS--LEIPEETLLRYVRLVKSAG 143 (299)
Q Consensus 69 ~~~l~eKI~l~~~~gV~v~~--GtlfE~a~~qg~~~~~~yl~~~k~lGF~-~IEISdGt--i~i~~~~r~~lI~~~~~~G 143 (299)
++.|++.+++|++||+.+.. ...-+.. . ..++++++.++++|+. .+-++=.+ -.++++++.+.|+++++.|
T Consensus 190 ~~~l~~~~~~A~~~g~~i~~Hv~e~~d~~--~--~~~~~~~e~~~~~g~~~~~~i~H~~~l~~~~~~~~~~~i~~lae~g 265 (391)
T PRK05985 190 EGQLDIVFGLAERHGVGIDIHLHEPGELG--A--FQLERIAARTRALGMQGRVAVSHAFCLGDLPEREVDRLAERLAEAG 265 (391)
T ss_pred HHHHHHHHHHHHHhCCCcEEeeCCCCCcc--H--HHHHHHHHHHHHhCCCCCEehhhhhhhhcCCHHHHHHHHHHHHHcC
Confidence 36788888999999976632 1111110 1 1455677777888885 23333322 2567777788999999998
Q ss_pred Ccccce
Q 022296 144 LKAKPK 149 (299)
Q Consensus 144 ~~v~~E 149 (299)
..|.+.
T Consensus 266 ~~v~~~ 271 (391)
T PRK05985 266 VAIMTN 271 (391)
T ss_pred CeEEEe
Confidence 887543
No 244
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=78.67 E-value=31 Score=33.21 Aligned_cols=26 Identities=12% Similarity=0.063 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEI 127 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i 127 (299)
.+.++.+.|++.|.|+|.+++.+..+
T Consensus 178 ~~~~~a~~l~~~G~dgI~~~n~~~~~ 203 (334)
T PRK07565 178 NLANMAKRLDAAGADGLVLFNRFYQP 203 (334)
T ss_pred hHHHHHHHHHHcCCCeEEEECCcCCC
Confidence 45788888999999999999887544
No 245
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=78.54 E-value=12 Score=36.06 Aligned_cols=78 Identities=14% Similarity=0.145 Sum_probs=55.1
Q ss_pred EeeCcccccCChhHHHHHHHHHHhC---CceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC----
Q 022296 58 KFSGGSHSLMPKPFIEEVVKRAHQH---DVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI---- 127 (299)
Q Consensus 58 Kfg~GTs~l~p~~~l~eKI~l~~~~---gV~v~~---GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i---- 127 (299)
|-|.|++.+-.++.+.+.++-.++. +++|+- .||- ..+...++.+.+.+.|.+.|-|+.++-.=
T Consensus 105 ~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g 178 (312)
T PRK10550 105 GSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------SGERKFEIADAVQQAGATELVVHGRTKEDGYRA 178 (312)
T ss_pred cCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC------CchHHHHHHHHHHhcCCCEEEECCCCCccCCCC
Confidence 7788888999999999999888874 354442 2341 11245678888999999999999887522
Q ss_pred ChhHHHHHHHHHHHc
Q 022296 128 PEETLLRYVRLVKSA 142 (299)
Q Consensus 128 ~~~~r~~lI~~~~~~ 142 (299)
+.-++ ++|++++++
T Consensus 179 ~~~~~-~~i~~ik~~ 192 (312)
T PRK10550 179 EHINW-QAIGEIRQR 192 (312)
T ss_pred CcccH-HHHHHHHhh
Confidence 11133 788888884
No 246
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=78.37 E-value=26 Score=32.38 Aligned_cols=99 Identities=15% Similarity=0.174 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc-CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccch
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLE-IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDK 180 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~-i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~ 180 (299)
...+..+...+.|++.+=|-|=+-. .....-.++|+++++. .++-+..+ +.
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~-----~~~pv~~~-------GG---------------- 82 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAET-----VFIPLTVG-------GG---------------- 82 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHh-----cCCCEEEE-------CC----------------
Confidence 4556667777899999888776644 2455556788888773 11112111 00
Q ss_pred hcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecC
Q 022296 181 LFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 248 (299)
Q Consensus 181 ~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP 248 (299)
..+ ++.+++.+++||+.|++ ++.... ..+++.++.+++|.+++++--.
T Consensus 83 -----i~s---------~~d~~~~~~~Ga~~viv-gt~~~~-----~p~~~~~~~~~~~~~~iv~slD 130 (254)
T TIGR00735 83 -----IKS---------IEDVDKLLRAGADKVSI-NTAAVK-----NPELIYELADRFGSQCIVVAID 130 (254)
T ss_pred -----CCC---------HHHHHHHHHcCCCEEEE-ChhHhh-----ChHHHHHHHHHcCCCCEEEEEE
Confidence 111 56668899999999999 554544 2678888988888888887554
No 247
>PRK05926 hypothetical protein; Provisional
Probab=78.35 E-value=25 Score=34.89 Aligned_cols=90 Identities=19% Similarity=0.276 Sum_probs=59.2
Q ss_pred eeCcccccCChhHHHHHHHHHHhC--CceecCCcHHHHHHHhCC--chHHHHHHHHHHcCCCEE-----EecCCcc----
Q 022296 59 FSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGP--SAFKEYVEDCKQVGFDTI-----ELNVGSL---- 125 (299)
Q Consensus 59 fg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~GtlfE~a~~qg~--~~~~~yl~~~k~lGF~~I-----EISdGti---- 125 (299)
+-.|-..-.+-+.+.+.++..+++ ++.++.=+-.|+++...- -..++.++..|+.|++.+ |+.+-++
T Consensus 120 iv~G~~p~~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~ 199 (370)
T PRK05926 120 IVAGCFPSCNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETL 199 (370)
T ss_pred EEeCcCCCCCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhh
Confidence 334555445667777888878876 566554345676664331 136888888999888654 3333332
Q ss_pred ---cCChhHHHHHHHHHHHcCCcccc
Q 022296 126 ---EIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 126 ---~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
..+.++|.+.++.+++.|+++-+
T Consensus 200 ~p~~~t~~e~l~~i~~a~~~Gi~~~s 225 (370)
T PRK05926 200 APGRLSSQGFLEIHKTAHSLGIPSNA 225 (370)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcccC
Confidence 34668888999999998888766
No 248
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=78.19 E-value=13 Score=33.68 Aligned_cols=97 Identities=16% Similarity=0.202 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCC-hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccch
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIP-EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDK 180 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~-~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~ 180 (299)
..-+..+.+.+.|++.+-+=|=..... ...-.+.|+.+.+. +++..- ++ +.
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~-------~~~~l~---v~--GG---------------- 84 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEA-------VGVPVQ---LG--GG---------------- 84 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHH-------cCCcEE---Ec--CC----------------
Confidence 344555666678999998877665442 23445566666652 222111 00 00
Q ss_pred hcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEe
Q 022296 181 LFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFE 246 (299)
Q Consensus 181 ~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifE 246 (299)
+ +..+.++..+++||+.|++-+.-+. +.+.+.++.+.++.++++.-
T Consensus 85 -----i---------~~~~~~~~~~~~Ga~~v~iGs~~~~------~~~~~~~i~~~~g~~~i~~s 130 (241)
T PRK13585 85 -----I---------RSAEDAASLLDLGVDRVILGTAAVE------NPEIVRELSEEFGSERVMVS 130 (241)
T ss_pred -----c---------CCHHHHHHHHHcCCCEEEEChHHhh------ChHHHHHHHHHhCCCcEEEE
Confidence 0 1156668889999999999665332 35678888888887777653
No 249
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=78.17 E-value=16 Score=33.65 Aligned_cols=99 Identities=18% Similarity=0.200 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc-CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccch
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLE-IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDK 180 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~-i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~ 180 (299)
...+..+.+.+.|++.+=|-|=+-+ .....-.++|+++++. +.+. .. ..++
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~-------~~ip--v~---~~GG---------------- 82 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQ-------VFIP--LT---VGGG---------------- 82 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHh-------CCCC--EE---eeCC----------------
Confidence 4556666777899999988887753 3445556788888873 2211 00 0011
Q ss_pred hcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecC
Q 022296 181 LFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 248 (299)
Q Consensus 181 ~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP 248 (299)
..+ .+.+++.+++||+.|++= ++.+. +.+++.++.+.+|-+++++=.+
T Consensus 83 -----i~s---------~~~~~~~l~~Ga~~Viig-t~~l~-----~p~~~~ei~~~~g~~~iv~slD 130 (253)
T PRK02083 83 -----IRS---------VEDARRLLRAGADKVSIN-SAAVA-----NPELISEAADRFGSQCIVVAID 130 (253)
T ss_pred -----CCC---------HHHHHHHHHcCCCEEEEC-hhHhh-----CcHHHHHHHHHcCCCCEEEEEE
Confidence 011 556688899999999994 43433 3578899999888888887664
No 250
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=77.84 E-value=2.5 Score=41.16 Aligned_cols=119 Identities=20% Similarity=0.311 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHhC-----CceecCCcHHHHHHHhCCchHHH---HHHHHHHcCCCEEEecCCcccCC-----hhHHHHHH
Q 022296 70 PFIEEVVKRAHQH-----DVYVSTGDWAEHLIRNGPSAFKE---YVEDCKQVGFDTIELNVGSLEIP-----EETLLRYV 136 (299)
Q Consensus 70 ~~l~eKI~l~~~~-----gV~v~~GtlfE~a~~qg~~~~~~---yl~~~k~lGF~~IEISdGti~i~-----~~~r~~lI 136 (299)
..+.|.|+-.++. +|++++-.+.+- | ...++ +.+.+.+.|+|.|+||.|+...+ +.-...+.
T Consensus 193 Rf~~eii~~ir~~~~~~v~vRis~~d~~~~----G-~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~ 267 (337)
T PRK13523 193 RFLREIIDAVKEVWDGPLFVRISASDYHPG----G-LTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFA 267 (337)
T ss_pred HHHHHHHHHHHHhcCCCeEEEecccccCCC----C-CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHH
Confidence 4556666666665 345554333221 2 13444 44555566999999999985321 22234556
Q ss_pred HHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHcc-CcEEEEe
Q 022296 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAG-ADMIMID 215 (299)
Q Consensus 137 ~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAG-A~~VIiE 215 (299)
+.+++. .+ +|=+++ ++ ..+ .+.+++.|+.| ||+|++
T Consensus 268 ~~ik~~-~~-ipVi~~----------G~---------------------i~~---------~~~a~~~l~~g~~D~V~~- 304 (337)
T PRK13523 268 EHIREH-AN-IATGAV----------GL---------------------ITS---------GAQAEEILQNNRADLIFI- 304 (337)
T ss_pred HHHHhh-cC-CcEEEe----------CC---------------------CCC---------HHHHHHHHHcCCCChHHh-
Confidence 666652 00 111111 10 001 34458889988 999877
Q ss_pred ccccccCCCcccHHHHHHHHhccCCC
Q 022296 216 SDDVCKHADSLRADIIAKVIGRLGLE 241 (299)
Q Consensus 216 argi~d~~G~~r~d~i~~ii~~l~~e 241 (299)
+|++.- +++++.++.+.+..+
T Consensus 305 gR~~ia-----dP~~~~k~~~~~~~~ 325 (337)
T PRK13523 305 GRELLR-----NPYFPRIAAKELGFE 325 (337)
T ss_pred hHHHHh-----CccHHHHHHHHcCCC
Confidence 564332 246677777666643
No 251
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=77.72 E-value=5.1 Score=38.75 Aligned_cols=53 Identities=19% Similarity=0.415 Sum_probs=39.1
Q ss_pred CchHHHHHHHHHHcCCCEEEe---------cCCcccCC-hhHHHHHHHHHHHcCCcccceeee
Q 022296 100 PSAFKEYVEDCKQVGFDTIEL---------NVGSLEIP-EETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEI---------SdGti~i~-~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
|+...+-++.+|.+||++|++ ..|..+.+ ..+..++|+.|+++||.|+--+|-
T Consensus 23 ~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGp 85 (319)
T PF01301_consen 23 PEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGP 85 (319)
T ss_dssp GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES
T ss_pred hhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEecccc
Confidence 346788899999999999987 46777776 457789999999999999877775
No 252
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=77.59 E-value=5.4 Score=35.70 Aligned_cols=79 Identities=10% Similarity=0.098 Sum_probs=46.5
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (299)
+...++.+++.+-+| ++-+ .++++..++.-.+..+..++.+.+ ++|---. .....++.+ .++|-++|-|.
T Consensus 15 t~~~i~~~~~~a~~~------~~~a-v~v~p~~v~~~~~~l~~~~~~v~~~~~fp~g~-~~~~~k~~e-ve~A~~~GAde 85 (203)
T cd00959 15 TEEDIRKLCDEAKEY------GFAA-VCVNPCFVPLAREALKGSGVKVCTVIGFPLGA-TTTEVKVAE-AREAIADGADE 85 (203)
T ss_pred CHHHHHHHHHHHHHc------CCCE-EEEcHHHHHHHHHHcCCCCcEEEEEEecCCCC-CcHHHHHHH-HHHHHHcCCCE
Confidence 677888888888763 2222 334456677666666667777665 2321111 000002223 77899999999
Q ss_pred EEecCCccc
Q 022296 118 IELNVGSLE 126 (299)
Q Consensus 118 IEISdGti~ 126 (299)
|++.-..-.
T Consensus 86 vdvv~~~g~ 94 (203)
T cd00959 86 IDMVINIGA 94 (203)
T ss_pred EEEeecHHH
Confidence 999655443
No 253
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=77.49 E-value=25 Score=31.95 Aligned_cols=96 Identities=20% Similarity=0.253 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHcCCC---EEEec-CCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCc
Q 022296 102 AFKEYVEDCKQVGFD---TIELN-VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~---~IEIS-dGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~ 177 (299)
...++.+.+.+.|++ .+.+| +|+- . ..-..+|+++++. ++++ .- ..++
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~--~-~~~~~~i~~i~~~-------~~~p--v~---~~GG------------- 79 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEG--R-ETMLDVVERVAEE-------VFIP--LT---VGGG------------- 79 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCccccc--C-cccHHHHHHHHHh-------CCCC--EE---EeCC-------------
Confidence 567788888899999 55555 3222 2 2234788888773 2221 00 0011
Q ss_pred cchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecC
Q 022296 178 TDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 248 (299)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP 248 (299)
..+ .+.+++.+++||+.|++ +++++. +.+.+.++++.++-+++++--.
T Consensus 80 --------I~s---------~~d~~~~l~~G~~~v~i-g~~~~~-----~p~~~~~i~~~~~~~~i~~~ld 127 (243)
T cd04731 80 --------IRS---------LEDARRLLRAGADKVSI-NSAAVE-----NPELIREIAKRFGSQCVVVSID 127 (243)
T ss_pred --------CCC---------HHHHHHHHHcCCceEEE-Cchhhh-----ChHHHHHHHHHcCCCCEEEEEE
Confidence 011 55568888999999988 566664 3577888888887778885543
No 254
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=77.48 E-value=27 Score=32.04 Aligned_cols=80 Identities=13% Similarity=0.076 Sum_probs=42.1
Q ss_pred ecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCce----ecCCcHHHHH---HHhCCch
Q 022296 30 RSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY----VSTGDWAEHL---IRNGPSA 102 (299)
Q Consensus 30 ~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~----v~~GtlfE~a---~~qg~~~ 102 (299)
+|-.+=+.....+++.+.+.-+++|-+ ++-.+.+.+++-++.++++|.. +.|.|-+|.+ +.+. .
T Consensus 68 lDvHLm~~~p~~~i~~~~~~Gad~itv-------H~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~--~ 138 (228)
T PTZ00170 68 LDCHLMVSNPEKWVDDFAKAGASQFTF-------HIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTD--L 138 (228)
T ss_pred EEEEECCCCHHHHHHHHHHcCCCEEEE-------eccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccc--h
Confidence 344442222334555555555555544 2222333377888888888753 3455533333 2223 5
Q ss_pred HHHHHHHHHHcCCCEE
Q 022296 103 FKEYVEDCKQVGFDTI 118 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~I 118 (299)
+|.-+-.+.+-||+..
T Consensus 139 vD~Vl~m~v~pG~~gq 154 (228)
T PTZ00170 139 VDMVLVMTVEPGFGGQ 154 (228)
T ss_pred hhhHHhhhcccCCCCc
Confidence 6666666777777643
No 255
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=77.45 E-value=11 Score=36.31 Aligned_cols=77 Identities=29% Similarity=0.364 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCCh--------hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPE--------ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~--------~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~ 173 (299)
.+.+|.+.+.+.|+|+|||+-++...+. +...++++.+++. . -+| +.+| .+ |
T Consensus 113 ~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~-~-~iP-v~vK--l~---------------p 172 (325)
T cd04739 113 GWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSA-V-TIP-VAVK--LS---------------P 172 (325)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhc-c-CCC-EEEE--cC---------------C
Confidence 4668888889999999999888743332 2235778877764 1 133 4555 21 1
Q ss_pred CCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc
Q 022296 174 APRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD 217 (299)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar 217 (299)
. ...+ .+.++...++||+-|++-.+
T Consensus 173 ~----------------~~~~---~~~a~~l~~~Gadgi~~~nt 197 (325)
T cd04739 173 F----------------FSAL---AHMAKQLDAAGADGLVLFNR 197 (325)
T ss_pred C----------------ccCH---HHHHHHHHHcCCCeEEEEcC
Confidence 0 1223 55567788999999999887
No 256
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=77.25 E-value=6.6 Score=37.71 Aligned_cols=74 Identities=9% Similarity=0.119 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHhCCcee--cCCcHHHHHHHhCCc----hHHHHHHHHHHcCCCEEEecCCcccCC----hhHHHHHHHH
Q 022296 69 KPFIEEVVKRAHQHDVYV--STGDWAEHLIRNGPS----AFKEYVEDCKQVGFDTIELNVGSLEIP----EETLLRYVRL 138 (299)
Q Consensus 69 ~~~l~eKI~l~~~~gV~v--~~GtlfE~a~~qg~~----~~~~yl~~~k~lGF~~IEISdGti~i~----~~~r~~lI~~ 138 (299)
...+...|.-+|++|++| +.|||-...+.+... -++.|.+.++.+||+.|.|.=-.-... .+.+.++|+.
T Consensus 53 ~~~~~~~i~~lk~~G~kViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~ 132 (294)
T cd06543 53 GGWIKSDIAALRAAGGDVIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALAL 132 (294)
T ss_pred chhHHHHHHHHHHcCCeEEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHH
Confidence 446888999999999855 458876544443322 266788899999999999842221122 2667888888
Q ss_pred HHHc
Q 022296 139 VKSA 142 (299)
Q Consensus 139 ~~~~ 142 (299)
++++
T Consensus 133 Lq~~ 136 (294)
T cd06543 133 LQKE 136 (294)
T ss_pred HHHH
Confidence 8874
No 257
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=77.18 E-value=25 Score=32.25 Aligned_cols=77 Identities=13% Similarity=0.130 Sum_probs=52.2
Q ss_pred CCchHHHHHHHHHHcCCCE--EEecCCcc--cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCC
Q 022296 99 GPSAFKEYVEDCKQVGFDT--IELNVGSL--EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (299)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~--IEISdGti--~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~ 174 (299)
++..+.+.++.+++.|++. +-|-||.. .++.. .+.|+.+++.++.+.-++..+ . .+
T Consensus 17 d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G--~~~v~~lr~~~~~~~lDvHLm--~------~~---------- 76 (228)
T PTZ00170 17 DFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFG--PPVVKSLRKHLPNTFLDCHLM--V------SN---------- 76 (228)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcC--HHHHHHHHhcCCCCCEEEEEC--C------CC----------
Confidence 3347889999999999776 66788877 33333 468888888764444344442 0 00
Q ss_pred CCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc
Q 022296 175 PRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD 217 (299)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar 217 (299)
+ .+.++.+.++|||+|.+=++
T Consensus 77 ----------------p------~~~i~~~~~~Gad~itvH~e 97 (228)
T PTZ00170 77 ----------------P------EKWVDDFAKAGASQFTFHIE 97 (228)
T ss_pred ----------------H------HHHHHHHHHcCCCEEEEecc
Confidence 2 33357788999999999766
No 258
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=77.15 E-value=7.2 Score=35.78 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (299)
...+..+.+.+-|++.|||.- ..+...+.|+++++.
T Consensus 21 ~a~~~~~al~~~Gi~~iEit~-----~t~~a~~~i~~l~~~ 56 (204)
T TIGR01182 21 DALPLAKALIEGGLRVLEVTL-----RTPVALDAIRLLRKE 56 (204)
T ss_pred HHHHHHHHHHHcCCCEEEEeC-----CCccHHHHHHHHHHH
Confidence 455667889999999999976 446677899999873
No 259
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=76.86 E-value=60 Score=31.64 Aligned_cols=22 Identities=14% Similarity=-0.028 Sum_probs=17.4
Q ss_pred hhhhhhhHHHHHHHHHccCcEEEEe
Q 022296 191 VGVGINKSRRAERCLEAGADMIMID 215 (299)
Q Consensus 191 ~~~~~~~i~~~~~dLeAGA~~VIiE 215 (299)
.+++ ++.++..-++|+|+|=|-
T Consensus 240 ~ee~---~~~~~~l~~~g~d~i~vs 261 (338)
T cd02933 240 EATF---SYLAKELNKRGLAYLHLV 261 (338)
T ss_pred HHHH---HHHHHHHHHcCCcEEEEe
Confidence 5666 777788888999999873
No 260
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=76.84 E-value=11 Score=36.06 Aligned_cols=94 Identities=13% Similarity=0.139 Sum_probs=71.4
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChh---HHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHH--HcCC
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKP---FIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCK--QVGF 115 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~---~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k--~lGF 115 (299)
..+.+++..++|+.++|.|+.-..-+-.+ .|++.++.+++.|++|..- =+..+- +.+..|.+.+- ++|+
T Consensus 42 f~~~ivd~~~~~v~~vK~gla~f~~~G~~G~~~l~~~i~~l~~~g~~VilD~K~~DI~-----nTv~~ya~a~~~~~~g~ 116 (278)
T PRK00125 42 FCRIIVDATADLVAAFKPQIAYFEAHGAEGLAQLERTIAYLREAGVLVIADAKRGDIG-----STAEAYAKAAFESPLEA 116 (278)
T ss_pred HHHHHHHhcCCcccEEeccHHHHHhcCchhhhHHHHHHHHHHHCCCcEEEEeecCChH-----HHHHHHHHHHhcCccCC
Confidence 44789999999999999999877766554 6888999999999988763 344432 24566777776 7999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHcC
Q 022296 116 DTIELNVGSLEIPEETLLRYVRLVKSAG 143 (299)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~G 143 (299)
|+|-|+- -+..+....+++.+++.|
T Consensus 117 DavTVhp---~~G~d~l~~~~~~~~~~~ 141 (278)
T PRK00125 117 DAVTVSP---YMGFDSLEPYLEYAEEHG 141 (278)
T ss_pred cEEEECC---cCCHHHHHHHHHHHHhcC
Confidence 9999994 556666667777776654
No 261
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=76.33 E-value=27 Score=31.53 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=19.0
Q ss_pred HHHHHHHccCcEEEEeccccccCCCc
Q 022296 200 RAERCLEAGADMIMIDSDDVCKHADS 225 (299)
Q Consensus 200 ~~~~dLeAGA~~VIiEargi~d~~G~ 225 (299)
.++..+++||+.|++ ++.++.+.-.
T Consensus 207 di~~~~~~Ga~gv~v-gsa~~~~~~~ 231 (241)
T PRK13585 207 DLRALKEAGAAGVVV-GSALYKGKFT 231 (241)
T ss_pred HHHHHHHcCCCEEEE-EHHHhcCCcC
Confidence 345668899999999 8878776544
No 262
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=76.25 E-value=17 Score=35.44 Aligned_cols=80 Identities=20% Similarity=0.199 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHcC--CCEEEecCCcccC-------ChhHHHHHHHHHHHcCCcc----cceeeeecCCCCCCCccccccc
Q 022296 102 AFKEYVEDCKQVG--FDTIELNVGSLEI-------PEETLLRYVRLVKSAGLKA----KPKFAVMFNKSDIPSDRDRAFG 168 (299)
Q Consensus 102 ~~~~yl~~~k~lG--F~~IEISdGti~i-------~~~~r~~lI~~~~~~G~~v----~~E~gvK~~~sevg~~~d~~~~ 168 (299)
..++|.+.+++++ +|++|++=++-.. ..+.-.++++.+++. ... +| +.+|-.
T Consensus 155 ~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~-~~~~~~~~P-V~vKls------------- 219 (344)
T PRK05286 155 AVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEA-QAELHGYVP-LLVKIA------------- 219 (344)
T ss_pred CHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHH-HhccccCCc-eEEEeC-------------
Confidence 6788888888888 9999998655433 344555777777763 000 23 445422
Q ss_pred ccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc
Q 022296 169 AYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD 217 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar 217 (299)
|. ++.+++ .+.++...++|||.|++=.+
T Consensus 220 ----p~--------------~~~~~~---~~ia~~l~~~Gadgi~~~nt 247 (344)
T PRK05286 220 ----PD--------------LSDEEL---DDIADLALEHGIDGVIATNT 247 (344)
T ss_pred ----CC--------------CCHHHH---HHHHHHHHHhCCcEEEEeCC
Confidence 10 113345 67788889999999999876
No 263
>PRK14057 epimerase; Provisional
Probab=76.05 E-value=16 Score=34.81 Aligned_cols=69 Identities=6% Similarity=0.045 Sum_probs=39.8
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCC-------------ceecCCcHHH
Q 022296 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-------------VYVSTGDWAE 93 (299)
Q Consensus 27 T~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g-------------V~v~~GtlfE 93 (299)
+..+|-+|=+.-..++++.+.+.-++||-+- +-. ...+.+-++..|++| |-+.|+|-+|
T Consensus 75 ~~p~DvHLMV~~P~~~i~~~~~aGad~It~H-------~Ea-~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e 146 (254)
T PRK14057 75 TFIKDVHLMVADQWTAAQACVKAGAHCITLQ-------AEG-DIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLD 146 (254)
T ss_pred CCCeeEEeeeCCHHHHHHHHHHhCCCEEEEe-------ecc-ccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHH
Confidence 3556777644434557777777666665331 110 124677777777765 4567788665
Q ss_pred HHHHhCCchHHHHHHHHH
Q 022296 94 HLIRNGPSAFKEYVEDCK 111 (299)
Q Consensus 94 ~a~~qg~~~~~~yl~~~k 111 (299)
. ++.|+..+.
T Consensus 147 ~--------i~~~l~~vD 156 (254)
T PRK14057 147 V--------IIPILSDVE 156 (254)
T ss_pred H--------HHHHHHhCC
Confidence 3 445665544
No 264
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=75.96 E-value=23 Score=34.74 Aligned_cols=177 Identities=18% Similarity=0.211 Sum_probs=109.9
Q ss_pred ceeEecCCCCCCcchhHHHHH---HHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecC---CcHHHHHHHhC
Q 022296 26 VTEMRSPHYTLSSSHNVLEDI---FESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST---GDWAEHLIRNG 99 (299)
Q Consensus 26 lT~V~DkGl~~~~g~~~l~Dl---Le~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~---GtlfE~a~~qg 99 (299)
.|++-+||..+. ..+++.+ +...-.=-|++=+++---.=+|.+...+.++++|+.|++|-. |-.+..++.++
T Consensus 101 ~Tein~~Gp~is--~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg~~L~~~L~~~ 178 (310)
T COG1105 101 ETEINFPGPEIS--EAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSGEALLAALEAK 178 (310)
T ss_pred EEEecCCCCCCC--HHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECChHHHHHHHccC
Confidence 899999998665 4445444 444455679999999888889999999999999999998874 65777777777
Q ss_pred Cc---------------------hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCccc-ceeeeec
Q 022296 100 PS---------------------AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAK-PKFAVMF 154 (299)
Q Consensus 100 ~~---------------------~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~-~E~gvK~ 154 (299)
|. ...+|.+.+...|...|=||.|. +=+..+.- +.+. |.+-+
T Consensus 179 P~lIKPN~~EL~~~~g~~~~~~~d~i~~a~~l~~~g~~~ViVSlG~~Gal~~~~~~~-----------~~a~~p~~~v-- 245 (310)
T COG1105 179 PWLIKPNREELEALFGRELTTLEDVIKAARELLAEGIENVIVSLGADGALLVTAEGV-----------YFASPPKVQV-- 245 (310)
T ss_pred CcEEecCHHHHHHHhCCCCCChHHHHHHHHHHHHCCCCEEEEEecCcccEEEccCCe-----------EEEeCCCcce--
Confidence 62 23445555666788888888654 33333321 1122 33444
Q ss_pred CCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHH
Q 022296 155 NKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKV 234 (299)
Q Consensus 155 ~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~i 234 (299)
.|.||+ +|+.-+..++. |. ...++++. .+....+|+..+.-+.- |.+..+.++++
T Consensus 246 -vstVGA-GDs~VAGf~~~--~~---------~~~~~e~~------l~~avA~g~a~~~~~~~------~~~~~~~~~~~ 300 (310)
T COG1105 246 -VSTVGA-GDSMVAGFLAG--LL---------KGKSLEEA------LRFAVACGAAAASQKGT------GIPDLDQLKKI 300 (310)
T ss_pred -ecCcCc-hHHHHHHHHHH--HH---------cCCCHHHH------HHHHHHHHHHHhhcCCC------CCCCHHHHHHH
Confidence 456776 44322222222 11 11224444 45556677776655444 44555667777
Q ss_pred HhccCCCc
Q 022296 235 IGRLGLEK 242 (299)
Q Consensus 235 i~~l~~ek 242 (299)
..++-.++
T Consensus 301 ~~~v~v~~ 308 (310)
T COG1105 301 YAQVTVEK 308 (310)
T ss_pred hhheEEEe
Confidence 77665443
No 265
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=75.82 E-value=31 Score=32.66 Aligned_cols=95 Identities=11% Similarity=0.126 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhc
Q 022296 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLF 182 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~ 182 (299)
++.-+..|+++|-+.|-.=.=--.=..++...+-+.+.++||..-|--|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGI------------------------------ 186 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGI------------------------------ 186 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCc------------------------------
Confidence 66777777777777766532111123445555555666666654333233
Q ss_pred ccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-ccc-cCCCcccHHHHHHHHhc
Q 022296 183 LASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-DVC-KHADSLRADIIAKVIGR 237 (299)
Q Consensus 183 ~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-gi~-d~~G~~r~d~i~~ii~~ 237 (299)
+++-+ -+-.+-+|+||+.+||=-== .|. ...|+-|.+.+.+++..
T Consensus 187 -------dl~Nf---~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~ 233 (236)
T TIGR03581 187 -------DLDNF---EEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAI 233 (236)
T ss_pred -------cHHhH---HHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHH
Confidence 23333 44467799999999984322 244 44699999999998864
No 266
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=75.73 E-value=13 Score=34.25 Aligned_cols=117 Identities=18% Similarity=0.279 Sum_probs=69.4
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCC
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~--GtlfE~a~~qg~~~~~~yl~~~k~lGF~ 116 (299)
..++.+++.+.- .|++=+= +|.-.-| +.|.+.+...|++++.+.- .|+=|.. .|.++|||
T Consensus 53 T~~ev~~l~~aG---adIIAlD-aT~R~Rp-~~l~~li~~i~~~~~l~MADist~ee~~-------------~A~~~G~D 114 (192)
T PF04131_consen 53 TLKEVDALAEAG---ADIIALD-ATDRPRP-ETLEELIREIKEKYQLVMADISTLEEAI-------------NAAELGFD 114 (192)
T ss_dssp SHHHHHHHHHCT----SEEEEE--SSSS-S-S-HHHHHHHHHHCTSEEEEE-SSHHHHH-------------HHHHTT-S
T ss_pred CHHHHHHHHHcC---CCEEEEe-cCCCCCC-cCHHHHHHHHHHhCcEEeeecCCHHHHH-------------HHHHcCCC
Confidence 455555555544 4555444 4767777 6799999999999977775 4665544 35579999
Q ss_pred EEEec-CCcccCC--hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhh
Q 022296 117 TIELN-VGSLEIP--EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGV 193 (299)
Q Consensus 117 ~IEIS-dGti~i~--~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (299)
.|=-- .|..+=+ ..-=.+||+++.+.+..|+-|=++ | ++++
T Consensus 115 ~I~TTLsGYT~~t~~~~pD~~lv~~l~~~~~pvIaEGri-----------------------~-------------tpe~ 158 (192)
T PF04131_consen 115 IIGTTLSGYTPYTKGDGPDFELVRELVQADVPVIAEGRI-----------------------H-------------TPEQ 158 (192)
T ss_dssp EEE-TTTTSSTTSTTSSHHHHHHHHHHHTTSEEEEESS--------------------------------------SHHH
T ss_pred EEEcccccCCCCCCCCCCCHHHHHHHHhCCCcEeecCCC-----------------------C-------------CHHH
Confidence 98531 1111111 222357999998876665555444 1 0344
Q ss_pred hhhhHHHHHHHHHccCcEEEEec
Q 022296 194 GINKSRRAERCLEAGADMIMIDS 216 (299)
Q Consensus 194 ~~~~i~~~~~dLeAGA~~VIiEa 216 (299)
+++.|++||+.|+|=+
T Consensus 159 -------a~~al~~GA~aVVVGs 174 (192)
T PF04131_consen 159 -------AAKALELGAHAVVVGS 174 (192)
T ss_dssp -------HHHHHHTT-SEEEE-H
T ss_pred -------HHHHHhcCCeEEEECc
Confidence 4999999999999854
No 267
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=75.68 E-value=31 Score=33.22 Aligned_cols=78 Identities=19% Similarity=0.285 Sum_probs=51.2
Q ss_pred ccCChhHHHHHHHHHHhCC-c-eecCCcHHHHHHHhCCch-HHHHHHHHHHcCCC-EEEecCCcccCC------------
Q 022296 65 SLMPKPFIEEVVKRAHQHD-V-YVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFD-TIELNVGSLEIP------------ 128 (299)
Q Consensus 65 ~l~p~~~l~eKI~l~~~~g-V-~v~~GtlfE~a~~qg~~~-~~~yl~~~k~lGF~-~IEISdGti~i~------------ 128 (299)
...|.+.+++..+.+++.+ + .+...+ .|+. -++.++.+++.|++ .|+| |.-+.+
T Consensus 83 ~~~~~~~~~~i~~~l~~~~~~~~i~~es--------rpd~i~~e~L~~l~~aG~~~~v~i--G~ES~~d~~L~~~inKg~ 152 (313)
T TIGR01210 83 REVPKETRNYIFEKIAQRDNLKEVVVES--------RPEFIDEEKLEELRKIGVNVEVAV--GLETANDRIREKSINKGS 152 (313)
T ss_pred CcCCHHHHHHHHHHHHhcCCcceEEEEe--------CCCcCCHHHHHHHHHcCCCEEEEE--ecCcCCHHHHHHhhCCCC
Confidence 3567778888888888776 3 211111 1222 26788889999987 4665 333333
Q ss_pred -hhHHHHHHHHHHHcCCcccceeee
Q 022296 129 -EETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 129 -~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
.++-.+.++.++++|+.++.-|=.
T Consensus 153 t~~~~~~ai~~~~~~Gi~v~~~~i~ 177 (313)
T TIGR01210 153 TFEDFIRAAELARKYGAGVKAYLLF 177 (313)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEe
Confidence 444558899999999987776644
No 268
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=75.68 E-value=31 Score=34.18 Aligned_cols=60 Identities=15% Similarity=0.072 Sum_probs=40.5
Q ss_pred eCcccccCChhHHHHHHHHHHhC-CceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc
Q 022296 60 SGGSHSLMPKPFIEEVVKRAHQH-DVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE 126 (299)
Q Consensus 60 g~GTs~l~p~~~l~eKI~l~~~~-gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~ 126 (299)
+.|......++.+.+.++..++. +++|..= + -+...+.+..+.+.+.|.+.|=+.|-+..
T Consensus 144 ~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~-------p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~ 205 (420)
T PRK08318 144 GMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLT-------PNITDIREPARAAKRGGADAVSLINTINS 205 (420)
T ss_pred CCcccccCCHHHHHHHHHHHHhccCCcEEEEcC-------CCcccHHHHHHHHHHCCCCEEEEecccCc
Confidence 34555667888999999988875 4544421 1 11124667778888999999987766654
No 269
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=75.63 E-value=80 Score=30.50 Aligned_cols=189 Identities=13% Similarity=0.178 Sum_probs=112.7
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCcee----cCCcH----HHHHHH----------------
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV----STGDW----AEHLIR---------------- 97 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v----~~Gtl----fE~a~~---------------- 97 (299)
.++++|..|-+- +++-|.+-+++-+.++.-|+-|.+.+-++ ++|+. ++.+..
T Consensus 5 ~~k~ll~~A~~~----~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lH 80 (283)
T PRK07998 5 NGRILLDRIQEK----HVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLH 80 (283)
T ss_pred cHHHHHHHHHHC----CCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 566777665443 46778888888888888888888887432 22211 121111
Q ss_pred --hCCchHHHHHHHHHHcCCCEEEecCCcccCChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 022296 98 --NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (299)
Q Consensus 98 --qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~----r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~ 171 (299)
++ .--+.+..|-+.||+.|=+ |||- +|.++ =.++++.++..|.-|--|+|.=-+ ++|..
T Consensus 81 LDH~--~~~e~i~~Ai~~GftSVM~-DgS~-l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg------~ed~~----- 145 (283)
T PRK07998 81 LDHG--KTFEDVKQAVRAGFTSVMI-DGAA-LPFEENIAFTKEAVDFAKSYGVPVEAELGAILG------KEDDH----- 145 (283)
T ss_pred CcCC--CCHHHHHHHHHcCCCEEEE-eCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCC------ccccc-----
Confidence 22 2236777888999999999 5654 56543 346788888899999899988311 12210
Q ss_pred cCCCCccchhcccCCCccchhhhhhhHHHHHHHH-HccCcEEEEec---cccccCCCcccHHHHHHHHhccCCCceEEec
Q 022296 172 ARAPRSTDKLFLASNPEIEVGVGINKSRRAERCL-EAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGLEKTMFEA 247 (299)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dL-eAGA~~VIiEa---rgi~d~~G~~r~d~i~~ii~~l~~eklifEA 247 (299)
.. ....+| +|++. +++. +-|+|.+-+== -|+|.. -+++.|.+++|-+.++.-=+|==+
T Consensus 146 -~~-~~~~~T--------~pe~a-------~~Fv~~TgvD~LAvaiGt~HG~Y~~-p~l~~~~l~~I~~~~~vPLVlHGg 207 (283)
T PRK07998 146 -VS-EADCKT--------EPEKV-------KDFVERTGCDMLAVSIGNVHGLEDI-PRIDIPLLKRIAEVSPVPLVIHGG 207 (283)
T ss_pred -cc-cccccC--------CHHHH-------HHHHHHhCcCeeehhccccccCCCC-CCcCHHHHHHHHhhCCCCEEEeCC
Confidence 00 001111 24554 6666 46988765543 289987 678899999998876543333333
Q ss_pred C-Cc-hhHHHHHHHhCCCcccc
Q 022296 248 T-NP-RTSEWFIRRYGPKVNLF 267 (299)
Q Consensus 248 P-~k-~qQ~~fI~~fG~~VNLg 267 (299)
+ .+ +|....|+.==..||.+
T Consensus 208 SG~~~e~~~~ai~~Gi~KiNi~ 229 (283)
T PRK07998 208 SGIPPEILRSFVNYKVAKVNIA 229 (283)
T ss_pred CCCCHHHHHHHHHcCCcEEEEC
Confidence 2 22 33333344333456665
No 270
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=75.62 E-value=11 Score=33.98 Aligned_cols=93 Identities=13% Similarity=0.110 Sum_probs=50.4
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCc-HHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD-WAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~Gt-lfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (299)
.+....++++..++|+|++|+|+--..-+..+ -++..++.+..+..-- +..+ |+.+..|.+.+.++|.|+
T Consensus 9 ~~~~a~~~~~~~~~~v~~iKig~~l~~~~G~~----~v~~l~~~~~~v~lD~K~~Di-----g~t~~~~~~~~~~~gad~ 79 (213)
T TIGR01740 9 TKDEALDLADSLGPEIEVIKVGIDLLLDGGDK----IIDELAKLNKLIFLDLKFADI-----PNTVKLQYESKIKQGADM 79 (213)
T ss_pred CHHHHHHHHHhcCCcCcEEEECHHHHHhcCHH----HHHHHHHcCCCEEEEEeecch-----HHHHHHHHHHHHhcCCCE
Confidence 45677889999999999999998665555443 4444555453332110 1111 113334444455566666
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcC
Q 022296 118 IELNVGSLEIPEETLLRYVRLVKSAG 143 (299)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G 143 (299)
|-|+- ..+.+....+++.+++.|
T Consensus 80 vTvh~---~~g~~~l~~~~~~~~~~~ 102 (213)
T TIGR01740 80 VNVHG---VAGSESVEAAKEAASEGG 102 (213)
T ss_pred EEEcC---CCCHHHHHHHHHHhhcCC
Confidence 65553 223333444444444433
No 271
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=75.60 E-value=41 Score=31.05 Aligned_cols=114 Identities=11% Similarity=0.162 Sum_probs=68.5
Q ss_pred CCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceec---------CCcHHH
Q 022296 23 RFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS---------TGDWAE 93 (299)
Q Consensus 23 ~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~---------~GtlfE 93 (299)
..++....|=|+ + .....+.+|+...+. .-.||.++.+++.+++-.+.+-+. |.++ +-+|.|
T Consensus 74 ~~~~pi~vGGGI--r-s~e~v~~~l~~Ga~k-----vvigt~a~~~~~~l~~~~~~fg~~-ivvslD~~~g~v~~~gw~~ 144 (234)
T PRK13587 74 LTTKDIEVGGGI--R-TKSQIMDYFAAGINY-----CIVGTKGIQDTDWLKEMAHTFPGR-IYLSVDAYGEDIKVNGWEE 144 (234)
T ss_pred hcCCeEEEcCCc--C-CHHHHHHHHHCCCCE-----EEECchHhcCHHHHHHHHHHcCCC-EEEEEEeeCCEEEecCCcc
Confidence 335565555555 3 556666788765544 567999999999999887776322 3333 334544
Q ss_pred HHHHhCCchHHHHHHHHHHcCCCEEEec----CCcccCChhHHHHHHHHHHHc-CCcccceeee
Q 022296 94 HLIRNGPSAFKEYVEDCKQVGFDTIELN----VGSLEIPEETLLRYVRLVKSA-GLKAKPKFAV 152 (299)
Q Consensus 94 ~a~~qg~~~~~~yl~~~k~lGF~~IEIS----dGti~i~~~~r~~lI~~~~~~-G~~v~~E~gv 152 (299)
. ..-...++++++.++|+..|=+. |||..=++-+ +++.+.+. +..+...-|+
T Consensus 145 ~----~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~---li~~l~~~~~ipvi~~GGi 201 (234)
T PRK13587 145 D----TELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFE---LTGQLVKATTIPVIASGGI 201 (234)
T ss_pred c----CCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHH---HHHHHHHhCCCCEEEeCCC
Confidence 2 12357999999999998865443 4565544444 44444442 3344333333
No 272
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=75.19 E-value=31 Score=34.43 Aligned_cols=85 Identities=14% Similarity=0.159 Sum_probs=54.2
Q ss_pred EEEeeCcccccCCh---h----HHHHHHHH-HHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEE--------
Q 022296 56 GLKFSGGSHSLMPK---P----FIEEVVKR-AHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE-------- 119 (299)
Q Consensus 56 ~lKfg~GTs~l~p~---~----~l~eKI~l-~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IE-------- 119 (299)
++|+..+|+..++. . .+++-+++ |-.-++.+|+|.=.|.--.+ .+-+-.++|+++|+-.|-
T Consensus 129 Ilkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~Gs~~E~~ml~---~l~~i~~ea~~~GlPlv~~~YpRG~~ 205 (348)
T PRK09250 129 ILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYFGSEESRRQIE---EISEAFEEAHELGLATVLWSYLRNSA 205 (348)
T ss_pred EEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHH---HHHHHHHHHHHhCCCEEEEecccCcc
Confidence 58999888774433 1 24444444 33345589999877766555 588899999999999985
Q ss_pred ecCCc-ccCChhHHHHHHHHHHHcC
Q 022296 120 LNVGS-LEIPEETLLRYVRLVKSAG 143 (299)
Q Consensus 120 ISdGt-i~i~~~~r~~lI~~~~~~G 143 (299)
+++.. .+-..+.-.-..+.+.+.|
T Consensus 206 i~~~~d~~~~~d~Ia~AaRiaaELG 230 (348)
T PRK09250 206 FKKDGDYHTAADLTGQANHLAATIG 230 (348)
T ss_pred cCCcccccccHHHHHHHHHHHHHHc
Confidence 34433 1223444455556666655
No 273
>PRK08445 hypothetical protein; Provisional
Probab=75.06 E-value=29 Score=34.01 Aligned_cols=100 Identities=16% Similarity=0.232 Sum_probs=72.1
Q ss_pred hcccccEEEeeCcccccCChhHHHHHHHHHHhCC--ceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCC-----EEEe
Q 022296 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD--VYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFD-----TIEL 120 (299)
Q Consensus 50 ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g--V~v~~--GtlfE~a~~qg~~~~~~yl~~~k~lGF~-----~IEI 120 (299)
.....+-+=+.+|-..-++.+.+.+.++..+++. +.+.. -+=..++...+.-..++-++..|+.|++ .+|+
T Consensus 86 ~~~g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~~~~g~glE~ 165 (348)
T PRK08445 86 LAIGGTQILFQGGVHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKGLSSIPGAGAEI 165 (348)
T ss_pred HHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCCCCCCCceee
Confidence 3444677778888888888889999999888875 54432 1223444332312458999999999998 2786
Q ss_pred cCCc----c---cCChhHHHHHHHHHHHcCCcccce
Q 022296 121 NVGS----L---EIPEETLLRYVRLVKSAGLKAKPK 149 (299)
Q Consensus 121 SdGt----i---~i~~~~r~~lI~~~~~~G~~v~~E 149 (299)
++.. + ..+.++|.+.++.+++.|+++-+=
T Consensus 166 ~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg 201 (348)
T PRK08445 166 LSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTAT 201 (348)
T ss_pred CCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeE
Confidence 6542 2 578889999999999999998773
No 274
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=74.92 E-value=24 Score=32.63 Aligned_cols=93 Identities=11% Similarity=0.177 Sum_probs=57.9
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhccc
Q 022296 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLA 184 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~ 184 (299)
++.+...+.|++.+=|=|=.-......-..+|+++.+.-+. | +-+ +.
T Consensus 34 ~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~--~-v~v--GG---------------------------- 80 (232)
T PRK13586 34 EIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFD--W-IQV--GG---------------------------- 80 (232)
T ss_pred HHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCC--C-EEE--eC----------------------------
Confidence 33444456888887776543333445556888888773121 1 222 10
Q ss_pred CCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEE
Q 022296 185 SNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMF 245 (299)
Q Consensus 185 ~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklif 245 (299)
++.+ ++++++.|++||++|+|=+.-+. ..++++++++++|.+++++
T Consensus 81 GIrs---------~e~~~~~l~~Ga~kvvigt~a~~------~p~~~~~~~~~~g~~~ivv 126 (232)
T PRK13586 81 GIRD---------IEKAKRLLSLDVNALVFSTIVFT------NFNLFHDIVREIGSNRVLV 126 (232)
T ss_pred CcCC---------HHHHHHHHHCCCCEEEECchhhC------CHHHHHHHHHHhCCCCEEE
Confidence 0111 66779999999999998655333 3578888888888778774
No 275
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=74.84 E-value=37 Score=32.84 Aligned_cols=97 Identities=15% Similarity=0.152 Sum_probs=54.3
Q ss_pred HHHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccc
Q 022296 107 VEDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVA 172 (299)
Q Consensus 107 l~~~k~lGF~~IEISdGti-------------~i~~~~r~~lI~~~~~~G~~-v~~E~gvK~~~sevg~~~d~~~~~~~~ 172 (299)
.+.+.+.|||.|||+-|.- .=.++.-.++++.+++. .. -+| |++|... |
T Consensus 81 A~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~-~~~~~p-VsvKiR~---g------------ 143 (312)
T PRK10550 81 AARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREA-VPAHLP-VTVKVRL---G------------ 143 (312)
T ss_pred HHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHh-cCCCcc-eEEEEEC---C------------
Confidence 3456778999999997772 12334445556666653 10 022 6676332 1
Q ss_pred CCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecccccc-CCCc-ccHHHHHHHHhcc
Q 022296 173 RAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCK-HADS-LRADIIAKVIGRL 238 (299)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d-~~G~-~r~d~i~~ii~~l 238 (299)
|. + .++. ++.++..-++|++.|.|=+|--.. -.|. .+.+.+.++-+.+
T Consensus 144 ---~~----------~--~~~~---~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~ 193 (312)
T PRK10550 144 ---WD----------S--GERK---FEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRL 193 (312)
T ss_pred ---CC----------C--chHH---HHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhc
Confidence 10 0 1224 566777789999999999982111 0122 2445566665544
No 276
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=74.72 E-value=14 Score=35.90 Aligned_cols=81 Identities=25% Similarity=0.314 Sum_probs=47.3
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccc
Q 022296 103 FKEYVEDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFG 168 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti-------------~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~ 168 (299)
+.+-.+.|++.|||.|||+-|+= .-.++.-.++++.+++. + +| +.+|.- +|..++
T Consensus 79 ~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~---~p-VsvKiR---~g~~~~---- 147 (333)
T PRK11815 79 LAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVS---IP-VTVKHR---IGIDDQ---- 147 (333)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcC---Cc-eEEEEE---eeeCCC----
Confidence 33334567788999999997652 11223334666666653 2 22 445421 111010
Q ss_pred ccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc
Q 022296 169 AYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD 217 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar 217 (299)
.+.+.+ ++.++...++|++.+++-+|
T Consensus 148 --------------------~t~~~~---~~~~~~l~~aG~d~i~vh~R 173 (333)
T PRK11815 148 --------------------DSYEFL---CDFVDTVAEAGCDTFIVHAR 173 (333)
T ss_pred --------------------cCHHHH---HHHHHHHHHhCCCEEEEcCC
Confidence 012344 66678888999999999987
No 277
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=74.64 E-value=15 Score=34.88 Aligned_cols=76 Identities=17% Similarity=0.303 Sum_probs=48.3
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccccCCCCc
Q 022296 99 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (299)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~ 177 (299)
+++...+.++.+++.|+++|+++-|..........+.|+.+++. + .| +.+| ++.+
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~---~p-vivK----~v~s---------------- 182 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWK---GP-LILK----GILT---------------- 182 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcC---CC-EEEe----ecCC----------------
Confidence 34456777888899999999998876532111112456666663 2 12 3333 1100
Q ss_pred cchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccc
Q 022296 178 TDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDD 218 (299)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEarg 218 (299)
.+.++...++||+.|++.++|
T Consensus 183 --------------------~~~a~~a~~~G~d~I~v~~~g 203 (299)
T cd02809 183 --------------------PEDALRAVDAGADGIVVSNHG 203 (299)
T ss_pred --------------------HHHHHHHHHCCCCEEEEcCCC
Confidence 344688899999999998874
No 278
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=74.56 E-value=72 Score=32.54 Aligned_cols=91 Identities=12% Similarity=0.213 Sum_probs=55.4
Q ss_pred ccEEEeeCcccccCChhHHHHHHHHHHhCC-ceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----
Q 022296 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-VYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL----- 125 (299)
Q Consensus 54 ID~lKfg~GTs~l~p~~~l~eKI~l~~~~g-V~v~~G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti----- 125 (299)
+..+-|.-.+..+ +++.+++..+...+.| +.+.-+ +=.... ..+ ++.++.+++.|+..|.+.--|.
T Consensus 240 v~~~~~~Dd~f~~-~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i-~~d----~ell~~l~~aG~~~v~iGiES~~~~~L 313 (497)
T TIGR02026 240 VGFFILADEEPTI-NRKKFQEFCEEIIARNPISVTWGINTRVTDI-VRD----ADILHLYRRAGLVHISLGTEAAAQATL 313 (497)
T ss_pred CCEEEEEeccccc-CHHHHHHHHHHHHhcCCCCeEEEEecccccc-cCC----HHHHHHHHHhCCcEEEEccccCCHHHH
Confidence 4555666555543 4445666666666655 322211 111111 111 5788999999999999844433
Q ss_pred -----cCChhHHHHHHHHHHHcCCccccee
Q 022296 126 -----EIPEETLLRYVRLVKSAGLKAKPKF 150 (299)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (299)
..+.++-.+.|+.++++|+.+...|
T Consensus 314 ~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~ 343 (497)
T TIGR02026 314 DHFRKGTTTSTNKEAIRLLRQHNILSEAQF 343 (497)
T ss_pred HHhcCCCCHHHHHHHHHHHHHCCCcEEEEE
Confidence 2456777899999999999865443
No 279
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=74.39 E-value=21 Score=35.56 Aligned_cols=46 Identities=17% Similarity=0.266 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHH----HHHHHHHHHcCCccc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETL----LRYVRLVKSAGLKAK 147 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r----~~lI~~~~~~G~~v~ 147 (299)
...+.++.++++||+.||+.+.- ...+..++ .++-+.+++.|++|.
T Consensus 33 ~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~ 85 (382)
T TIGR02631 33 DPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVP 85 (382)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEE
Confidence 67889999999999999998754 23443332 456667888899854
No 280
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=74.38 E-value=6.9 Score=35.68 Aligned_cols=69 Identities=19% Similarity=0.298 Sum_probs=44.7
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccch
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDK 180 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~ 180 (299)
+...+..+.+.+-|+.+|||.--+ ....+.|+.+++. .|++-+ |.
T Consensus 20 ~~a~~~~~al~~gGi~~iEiT~~t-----~~a~~~I~~l~~~----~p~~~v-------GA------------------- 64 (196)
T PF01081_consen 20 EDAVPIAEALIEGGIRAIEITLRT-----PNALEAIEALRKE----FPDLLV-------GA------------------- 64 (196)
T ss_dssp GGHHHHHHHHHHTT--EEEEETTS-----TTHHHHHHHHHHH----HTTSEE-------EE-------------------
T ss_pred HHHHHHHHHHHHCCCCEEEEecCC-----ccHHHHHHHHHHH----CCCCee-------EE-------------------
Confidence 356667788999999999997654 4567899988873 133322 11
Q ss_pred hcccCCCccchhhhhhhHHHHHHHHHccCcEEEEec
Q 022296 181 LFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDS 216 (299)
Q Consensus 181 ~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEa 216 (299)
+|- ++ .+++++.++|||++++-=+
T Consensus 65 ----GTV-~~-------~e~a~~a~~aGA~FivSP~ 88 (196)
T PF01081_consen 65 ----GTV-LT-------AEQAEAAIAAGAQFIVSPG 88 (196)
T ss_dssp ----ES---S-------HHHHHHHHHHT-SEEEESS
T ss_pred ----Eec-cC-------HHHHHHHHHcCCCEEECCC
Confidence 110 11 5666999999999999755
No 281
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=74.37 E-value=8.2 Score=38.21 Aligned_cols=84 Identities=24% Similarity=0.229 Sum_probs=55.3
Q ss_pred CchHHHHHHHHHHcCCCEEEecC---CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCC
Q 022296 100 PSAFKEYVEDCKQVGFDTIELNV---GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (299)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISd---Gti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~ 176 (299)
++.+.+-++++-+-|+|.|=... ..--+|.++|.++++.+.+. +..|-|.+-. | ++
T Consensus 145 ~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~---a~~~TG~~~~--------------y-~~--- 203 (367)
T cd08205 145 PEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRR---ANEETGRKTL--------------Y-AP--- 203 (367)
T ss_pred HHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHH---HHHhhCCcce--------------E-EE---
Confidence 34566667777778999985433 33478999999999998872 1112222100 0 00
Q ss_pred ccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEec
Q 022296 177 STDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDS 216 (299)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEa 216 (299)
..+ -+.+++ +++++...++||+.||+--
T Consensus 204 -------nit--~~~~e~---i~~a~~a~~~Gad~vmv~~ 231 (367)
T cd08205 204 -------NIT--GDPDEL---RRRADRAVEAGANALLINP 231 (367)
T ss_pred -------EcC--CCHHHH---HHHHHHHHHcCCCEEEEec
Confidence 001 125788 9999999999999999976
No 282
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=74.32 E-value=43 Score=33.72 Aligned_cols=126 Identities=21% Similarity=0.300 Sum_probs=85.7
Q ss_pred cccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcccCChhH
Q 022296 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLEIPEET 131 (299)
Q Consensus 53 yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~i~~~~ 131 (299)
.|+-+=||+||-.+++++.|+..++..+++=- ....-.|+.+--+|..+ .+.++.+++.||+ -||=|--++.++.
T Consensus 87 ~v~ti~~GGGTPslL~~~~l~~ll~~l~~~~~--~~~~~~EitiE~nP~~~~~e~~~~l~~~GvN--RiSlGVQsf~~~~ 162 (416)
T COG0635 87 EVKTIYFGGGTPSLLSPEQLERLLKALRELFN--DLDPDAEITIEANPGTVEAEKFKALKEAGVN--RISLGVQSFNDEV 162 (416)
T ss_pred eEEEEEECCCccccCCHHHHHHHHHHHHHhcc--cCCCCceEEEEeCCCCCCHHHHHHHHHcCCC--EEEeccccCCHHH
Confidence 48888899999999999999999999987642 01112444444455543 5678899999999 5566666666544
Q ss_pred ------------HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHH
Q 022296 132 ------------LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSR 199 (299)
Q Consensus 132 ------------r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 199 (299)
-...+..+++.||.-.. +-.-.+ -| ..+.+.+ .+
T Consensus 163 lk~lgR~h~~~~~~~a~~~~~~~g~~~in-~DLIyg----------------lP--------------~QT~~~~---~~ 208 (416)
T COG0635 163 LKALGRIHDEEEAKEAVELARKAGFTSIN-IDLIYG----------------LP--------------GQTLESL---KE 208 (416)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCCcEE-EEeecC----------------CC--------------CCCHHHH---HH
Confidence 44567777776666222 111111 12 1347778 88
Q ss_pred HHHHHHHccCcEEEEec
Q 022296 200 RAERCLEAGADMIMIDS 216 (299)
Q Consensus 200 ~~~~dLeAGA~~VIiEa 216 (299)
..+..++.|.+.|=+.+
T Consensus 209 ~l~~a~~l~pdhis~y~ 225 (416)
T COG0635 209 DLEQALELGPDHLSLYS 225 (416)
T ss_pred HHHHHHhCCCCEEEEee
Confidence 88999999999998777
No 283
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=74.19 E-value=12 Score=34.96 Aligned_cols=43 Identities=16% Similarity=0.045 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccc
Q 022296 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~ 147 (299)
...+.+...|||.|-|.-=--.++.++...+|+.++..|..++
T Consensus 24 ~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~ 66 (249)
T TIGR03239 24 ITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPV 66 (249)
T ss_pred HHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcE
Confidence 4566677899999999999999999999999999998776643
No 284
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=73.74 E-value=51 Score=30.26 Aligned_cols=169 Identities=17% Similarity=0.222 Sum_probs=98.5
Q ss_pred CCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCC----hhHHHHHHHH--HHhCCceecC---C-cH
Q 022296 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMP----KPFIEEVVKR--AHQHDVYVST---G-DW 91 (299)
Q Consensus 22 R~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p----~~~l~eKI~l--~~~~gV~v~~---G-tl 91 (299)
+..|++-++..+. .+..++..++.+..|=+.+..++|-+.-+- .+.+++.-++ +++..+ +.- | .+
T Consensus 24 ~~~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~l~~~~~~~~-~aIGEiGLD~ 98 (255)
T PF01026_consen 24 REAGVSAIIIVST----DPEDWERVLELASQYPDRVYPALGIHPWEAHEVNEEDLEELEELINLNRPKV-VAIGEIGLDY 98 (255)
T ss_dssp HHTTEEEEEEEES----SHHHHHHHHHHHHHTTTEEEEEE---GGGGGGHSHHHHHHHHHHHHHTSTTE-EEEEEEEEET
T ss_pred HHcCCCEEEEcCC----CHHHhHHHHHHHhcCCCeEEEEecCCcchhhhhhHHHHHHHHHHHHhccccc-eeeeeeccCc
Confidence 4569999999998 555888999999999999999999776543 2223333333 344443 222 3 23
Q ss_pred HH-----HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccc
Q 022296 92 AE-----HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRA 166 (299)
Q Consensus 92 fE-----~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~ 166 (299)
.. ...+.. -|.+.++.|++++...+==+-+ .-.++++.+++.+.. .. -++-...+ +
T Consensus 99 ~~~~~~~~~~Q~~--vF~~ql~lA~~~~~pv~iH~r~-------a~~~~l~il~~~~~~-~~-~~i~H~f~-----g--- 159 (255)
T PF01026_consen 99 YWRNEEDKEVQEE--VFERQLELAKELNLPVSIHCRK-------AHEELLEILKEYGPP-NL-RVIFHCFS-----G--- 159 (255)
T ss_dssp TTTSSSGHHHHHH--HHHHHHHHHHHHTCEEEEEEES-------HHHHHHHHHHHTTGG-TS-EEEETT-------S---
T ss_pred ccccCCcHHHHHH--HHHHHHHHHHHhCCcEEEecCC-------cHHHHHHHHHhcccc-ce-eEEEecCC-----C---
Confidence 21 123333 6999999999999987744444 223677777775511 11 23432211 1
Q ss_pred ccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEe
Q 022296 167 FGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFE 246 (299)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifE 246 (299)
+ .+.+++.++.|.+.=+--. ++..+ .+...++++.+|+++|+.|
T Consensus 160 ---------------------~---------~~~~~~~~~~g~~~S~~~~--~~~~~----~~~~~~~~~~ip~drillE 203 (255)
T PF01026_consen 160 ---------------------S---------PEEAKKFLDLGCYFSFSGA--ITFKN----SKKVRELIKAIPLDRILLE 203 (255)
T ss_dssp -------------------------------HHHHHHHHHTTEEEEEEGG--GGSTT----SHHHHHHHHHS-GGGEEEE
T ss_pred ---------------------C---------HHHHHHHHhcCceEEeccc--ccccc----cHHHHHHHhcCChhhEEEc
Confidence 1 3344777777765433211 22222 3447778899999999999
Q ss_pred cCCc
Q 022296 247 ATNP 250 (299)
Q Consensus 247 AP~k 250 (299)
...|
T Consensus 204 TD~P 207 (255)
T PF01026_consen 204 TDAP 207 (255)
T ss_dssp -BTT
T ss_pred CCCC
Confidence 8764
No 285
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=73.68 E-value=29 Score=34.67 Aligned_cols=70 Identities=10% Similarity=0.128 Sum_probs=44.8
Q ss_pred ChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC----ChhHHHHHHHHHHHcC
Q 022296 68 PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI----PEETLLRYVRLVKSAG 143 (299)
Q Consensus 68 p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i----~~~~r~~lI~~~~~~G 143 (299)
.++.+.+.|.-.++.+|.+..-. +|....++.+.|.+.|.+.|-|..-+.+- +..++..+.+..++.+
T Consensus 117 ~p~l~~~ii~~vr~a~VtvkiRl--------~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~ 188 (369)
T TIGR01304 117 KPELLGERIAEVRDSGVITAVRV--------SPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELD 188 (369)
T ss_pred ChHHHHHHHHHHHhcceEEEEec--------CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCC
Confidence 45566777777777765444321 33468899999999999999987544321 1234566666666654
Q ss_pred Cc
Q 022296 144 LK 145 (299)
Q Consensus 144 ~~ 145 (299)
..
T Consensus 189 IP 190 (369)
T TIGR01304 189 VP 190 (369)
T ss_pred CC
Confidence 33
No 286
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=73.35 E-value=11 Score=34.47 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (299)
...+-.+.+.+-||.+|||.- ......+.|+++++.
T Consensus 17 ~a~~ia~al~~gGi~~iEit~-----~tp~a~~~I~~l~~~ 52 (201)
T PRK06015 17 HAVPLARALAAGGLPAIEITL-----RTPAALDAIRAVAAE 52 (201)
T ss_pred HHHHHHHHHHHCCCCEEEEeC-----CCccHHHHHHHHHHH
Confidence 456677889999999999865 456677899998874
No 287
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=73.33 E-value=58 Score=32.98 Aligned_cols=124 Identities=20% Similarity=0.217 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccce
Q 022296 70 PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPK 149 (299)
Q Consensus 70 ~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E 149 (299)
+.+.+-++.+++||+.+.. ..|.+..-+++.+-+.++.+.+.|.+.|=+-|-.--..+.+-.++|+.+++.=-. ..-
T Consensus 117 ~~~~~~v~ya~~~g~~~~~--~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l~DTvG~~~P~~~~~~i~~l~~~v~~-~~~ 193 (409)
T COG0119 117 ERAVDAVEYARDHGLEVRF--SAEDATRTDPEFLAEVVKAAIEAGADRINLPDTVGVATPNEVADIIEALKANVPN-KVI 193 (409)
T ss_pred HHHHHHHHHHHHcCCeEEE--EeeccccCCHHHHHHHHHHHHHcCCcEEEECCCcCccCHHHHHHHHHHHHHhCCC-CCe
Confidence 4566778999999987663 3455556666777888888889999999999999999999999999999984110 122
Q ss_pred eeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHH
Q 022296 150 FAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRAD 229 (299)
Q Consensus 150 ~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d 229 (299)
+++.+. .| .... +-.....++|||+.|=.==.||=+..||.--.
T Consensus 194 l~~H~H-------nD--------------------------~G~A---vANslaAv~aGa~~v~~TvnGiGERaGna~l~ 237 (409)
T COG0119 194 LSVHCH-------ND--------------------------LGMA---VANSLAAVEAGADQVEGTVNGIGERAGNAALE 237 (409)
T ss_pred EEEEec-------CC--------------------------cchH---HHHHHHHHHcCCcEEEEecccceeccccccHH
Confidence 333211 11 3344 66678899999998744334776777775544
Q ss_pred HHH
Q 022296 230 IIA 232 (299)
Q Consensus 230 ~i~ 232 (299)
.+.
T Consensus 238 ~v~ 240 (409)
T COG0119 238 EVV 240 (409)
T ss_pred HHH
Confidence 333
No 288
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=73.23 E-value=26 Score=32.10 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=39.3
Q ss_pred HHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHH
Q 022296 75 VVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKS 141 (299)
Q Consensus 75 KI~l~~~~gV-~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~ 141 (299)
.++...+++| .|.-+.=.|.+ .+-.+.+.+-|+..+||.- ......+.|+.+++
T Consensus 6 ~~~~l~~~~vi~vir~~~~~~a--------~~~~~al~~~Gi~~iEit~-----~~~~a~~~i~~l~~ 60 (213)
T PRK06552 6 ILTKLKANGVVAVVRGESKEEA--------LKISLAVIKGGIKAIEVTY-----TNPFASEVIKELVE 60 (213)
T ss_pred HHHHHHHCCEEEEEECCCHHHH--------HHHHHHHHHCCCCEEEEEC-----CCccHHHHHHHHHH
Confidence 3577788888 55556544444 3446889999999999865 34567789999987
No 289
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=73.09 E-value=28 Score=32.90 Aligned_cols=148 Identities=18% Similarity=0.211 Sum_probs=87.8
Q ss_pred hHHHHHHHhhcccccEEEeeCccccc-CC----hhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCC
Q 022296 41 NVLEDIFESMGQFVDGLKFSGGSHSL-MP----KPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGF 115 (299)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~l-~p----~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF 115 (299)
..+-+.|..+| ||.+=+|+..+.- .| .+.+.+.+.. ..++.+ .+|. . ..+ =++.+.+.|.
T Consensus 23 ~~i~~~L~~~G--v~~IEvGs~~~~~~~p~~~d~~~~~~~l~~--~~~~~~--~~~~-----~---~~~-dv~~A~~~g~ 87 (274)
T cd07938 23 IELIDALSAAG--LRRIEVTSFVSPKWVPQMADAEEVLAGLPR--RPGVRY--SALV-----P---NLR-GAERALAAGV 87 (274)
T ss_pred HHHHHHHHHcC--CCEEEeCCCCCcccccccCCHHHHHhhccc--CCCCEE--EEEC-----C---CHH-HHHHHHHcCc
Confidence 34556677777 9999999654443 22 2222222221 112322 2232 1 122 3788888999
Q ss_pred CEEEecCCccc--------CC----hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcc
Q 022296 116 DTIELNVGSLE--------IP----EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFL 183 (299)
Q Consensus 116 ~~IEISdGti~--------i~----~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~ 183 (299)
+.|-+...+-+ .+ .+.-.+.|+.+++.|++|.--+..-|... .+ .
T Consensus 88 ~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~-----~~-------------~----- 144 (274)
T cd07938 88 DEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCP-----YE-------------G----- 144 (274)
T ss_pred CEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCC-----CC-------------C-----
Confidence 99888755433 12 24455678999999998654333322210 11 0
Q ss_pred cCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 184 ASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 184 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
..+++.+ ++.++...++||+.|- |.|..|...+..+.+++..+
T Consensus 145 ----~~~~~~~---~~~~~~~~~~Ga~~i~-----l~DT~G~~~P~~v~~lv~~l 187 (274)
T cd07938 145 ----EVPPERV---AEVAERLLDLGCDEIS-----LGDTIGVATPAQVRRLLEAV 187 (274)
T ss_pred ----CCCHHHH---HHHHHHHHHcCCCEEE-----ECCCCCccCHHHHHHHHHHH
Confidence 0236777 8888888999998663 67788888888887777644
No 290
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=73.00 E-value=55 Score=31.53 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=17.9
Q ss_pred hhhhhhhHHHHHHHHHccCcEEEEecc
Q 022296 191 VGVGINKSRRAERCLEAGADMIMIDSD 217 (299)
Q Consensus 191 ~~~~~~~i~~~~~dLeAGA~~VIiEar 217 (299)
.++. ++.++.--++|+++|-|=++
T Consensus 235 ~eea---~~ia~~Le~~Gvd~iev~~g 258 (338)
T cd04733 235 EEDA---LEVVEALEEAGVDLVELSGG 258 (338)
T ss_pred HHHH---HHHHHHHHHcCCCEEEecCC
Confidence 5566 77777777899999877443
No 291
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=72.88 E-value=19 Score=35.11 Aligned_cols=56 Identities=20% Similarity=0.217 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHhC-CceecCC---cHHHHHHHhCC--chHHHHHHHHHHcC-CCEEEecCCccc
Q 022296 70 PFIEEVVKRAHQH-DVYVSTG---DWAEHLIRNGP--SAFKEYVEDCKQVG-FDTIELNVGSLE 126 (299)
Q Consensus 70 ~~l~eKI~l~~~~-gV~v~~G---tlfE~a~~qg~--~~~~~yl~~~k~lG-F~~IEISdGti~ 126 (299)
..+.+.++-.++. |..+..| ++.|.. ..|. +..-++.+.+.+.| +|.|+||.|+..
T Consensus 192 r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~-~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~ 254 (343)
T cd04734 192 RFLLEVLAAVRAAVGPDFIVGIRISGDEDT-EGGLSPDEALEIAARLAAEGLIDYVNVSAGSYY 254 (343)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEeehhhcc-CCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCC
Confidence 6777888877775 4332223 233321 1111 12335556666778 999999998764
No 292
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=72.81 E-value=35 Score=32.56 Aligned_cols=103 Identities=20% Similarity=0.232 Sum_probs=56.9
Q ss_pred chHHHHHHHHHHcCCCEEEecCCccc------------C-ChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccc
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVGSLE------------I-PEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRA 166 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~------------i-~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~ 166 (299)
+.+.+..+.+++.|||.|||+-|+=. + .++.-.++++.+++. + +| +.+|... |..++
T Consensus 75 ~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~---~p-v~vKir~---g~~~~-- 145 (319)
T TIGR00737 75 DTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVD---IP-VTVKIRI---GWDDA-- 145 (319)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcC---CC-EEEEEEc---ccCCC--
Confidence 34555666778899999999877521 1 223334556666553 2 22 5565321 11000
Q ss_pred ccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecccccc-CCCcccHHHHHHHHhccC
Q 022296 167 FGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCK-HADSLRADIIAKVIGRLG 239 (299)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d-~~G~~r~d~i~~ii~~l~ 239 (299)
.... ++.++...++|++.|.+-+|-... ..|....+.+.+|.+.++
T Consensus 146 ------------------------~~~~---~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ 192 (319)
T TIGR00737 146 ------------------------HINA---VEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVR 192 (319)
T ss_pred ------------------------cchH---HHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCC
Confidence 1123 555677788999999998872110 123344555666655544
No 293
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=72.74 E-value=8.6 Score=37.61 Aligned_cols=67 Identities=25% Similarity=0.308 Sum_probs=43.0
Q ss_pred HHHHHHHHhCCceecC-CcH-HHHHHHhCCc----hHHHHHHHHHHcCCCEEEecCCcccC-ChhHHHHHHHHHHH
Q 022296 73 EEVVKRAHQHDVYVST-GDW-AEHLIRNGPS----AFKEYVEDCKQVGFDTIELNVGSLEI-PEETLLRYVRLVKS 141 (299)
Q Consensus 73 ~eKI~l~~~~gV~v~~-Gtl-fE~a~~qg~~----~~~~yl~~~k~lGF~~IEISdGti~i-~~~~r~~lI~~~~~ 141 (299)
.+-+..||++||+|.+ |++ ++. + .++. -++.-++.+++.|||.|.|.==.... +.+++..++..+++
T Consensus 67 ~~~~~~A~~~~v~v~~~~~~~~~~-l-~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llke 140 (358)
T cd02875 67 DELLCYAHSKGVRLVLKGDVPLEQ-I-SNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKE 140 (358)
T ss_pred HHHHHHHHHcCCEEEEECccCHHH-c-CCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHH
Confidence 5778899999999888 553 333 2 2222 36888899999999999986333321 22345544444443
No 294
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=72.67 E-value=14 Score=32.94 Aligned_cols=102 Identities=17% Similarity=0.297 Sum_probs=60.6
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecC----C-----cHHHHH
Q 022296 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST----G-----DWAEHL 95 (299)
Q Consensus 25 GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~----G-----tlfE~a 95 (299)
++..+.+=|. + .+...+.+++.. .|. .-.|+..+.+++.+++..+-+.+..|.++. | +|.+
T Consensus 73 ~~pv~~~GgI--~-~~e~~~~~~~~G---ad~--vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~-- 142 (234)
T cd04732 73 GIPVQVGGGI--R-SLEDIERLLDLG---VSR--VIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLE-- 142 (234)
T ss_pred CCCEEEeCCc--C-CHHHHHHHHHcC---CCE--EEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCee--
Confidence 4555555554 3 667788888743 443 367888888888787776655432232221 1 2321
Q ss_pred HHhCCchHHHHHHHHHHcCCCEEEec----CCcccCChhHHHHHHHHHHH
Q 022296 96 IRNGPSAFKEYVEDCKQVGFDTIELN----VGSLEIPEETLLRYVRLVKS 141 (299)
Q Consensus 96 ~~qg~~~~~~yl~~~k~lGF~~IEIS----dGti~i~~~~r~~lI~~~~~ 141 (299)
..+....++.+.+.+.|++.+=+. +|+..=+. .++|+.+++
T Consensus 143 --~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~---~~~i~~i~~ 187 (234)
T cd04732 143 --TSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPN---FELYKELAA 187 (234)
T ss_pred --ecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCC---HHHHHHHHH
Confidence 112356788888999999988665 33332222 467777776
No 295
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=72.57 E-value=80 Score=29.09 Aligned_cols=109 Identities=16% Similarity=0.235 Sum_probs=67.1
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccC-ChhHHHHHHHHHHhCCc-------------eecCCcHHHHHHHhCCchHH
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLM-PKPFIEEVVKRAHQHDV-------------YVSTGDWAEHLIRNGPSAFK 104 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~-p~~~l~eKI~l~~~~gV-------------~v~~GtlfE~a~~qg~~~~~ 104 (299)
++..+.++++..-+-+|.+=+|.=++-.. +-..+++..+.+.++|+ ++..=+.+-. + +. ..+
T Consensus 16 ~~~~~~~~~~~l~~~ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~-~-~~--~~~ 91 (244)
T PRK13125 16 NVESFKEFIIGLVELVDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLED-Y-VD--SLD 91 (244)
T ss_pred CHHHHHHHHHHHHhhCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecch-h-hh--CHH
Confidence 45566666665433499999998555442 23345554444443333 2210011111 1 22 588
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 022296 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
+|++.|++.|.+.|=|=|=.++- .++-.++++.++++|+++..++..
T Consensus 92 ~~i~~~~~~Gadgvii~dlp~e~-~~~~~~~~~~~~~~Gl~~~~~v~p 138 (244)
T PRK13125 92 NFLNMARDVGADGVLFPDLLIDY-PDDLEKYVEIIKNKGLKPVFFTSP 138 (244)
T ss_pred HHHHHHHHcCCCEEEECCCCCCc-HHHHHHHHHHHHHcCCCEEEEECC
Confidence 99999999999999984432221 356678999999999998776665
No 296
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=72.54 E-value=94 Score=29.93 Aligned_cols=137 Identities=20% Similarity=0.246 Sum_probs=81.3
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhc
Q 022296 105 EYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLF 182 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~ 182 (299)
+.+..|-+.||+.|=+..-.+++.+-- =.++++.++..|.-|--|+|.=-+ .+|. ..... -.+.+|
T Consensus 88 e~i~~ai~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg------~e~~---~~~~~--~~~~~T- 155 (284)
T PRK12857 88 EQVMKCIRNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGG------TEDD---ITVDE--REAAMT- 155 (284)
T ss_pred HHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCC------ccCC---CCccc--chhhcC-
Confidence 467788889999999976554433222 236788888899999999988321 1110 00000 001111
Q ss_pred ccCCCccchhhhhhhHHHHHHHHH-ccCcEEEEec---cccccCCCcccHHHHHHHHhccCCCceEEecC-C-chhHHHH
Q 022296 183 LASNPEIEVGVGINKSRRAERCLE-AGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGLEKTMFEAT-N-PRTSEWF 256 (299)
Q Consensus 183 ~~~~~~~~~~~~~~~i~~~~~dLe-AGA~~VIiEa---rgi~d~~G~~r~d~i~~ii~~l~~eklifEAP-~-k~qQ~~f 256 (299)
+|++ ++++++ -|+|.+-|== -|+|...-+++-+++++|-+.++.-=++==+. . .+|....
T Consensus 156 -------~pe~-------a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~a 221 (284)
T PRK12857 156 -------DPEE-------ARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKA 221 (284)
T ss_pred -------CHHH-------HHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHH
Confidence 1444 477775 4998776543 39998878999999999988765321222221 2 2344444
Q ss_pred HHHhCCCcccc
Q 022296 257 IRRYGPKVNLF 267 (299)
Q Consensus 257 I~~fG~~VNLg 267 (299)
|+.==..||++
T Consensus 222 i~~Gi~KiNi~ 232 (284)
T PRK12857 222 ISLGVRKVNID 232 (284)
T ss_pred HHcCCeEEEeC
Confidence 54444567775
No 297
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=72.53 E-value=27 Score=31.98 Aligned_cols=101 Identities=13% Similarity=0.146 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
.-.++.+..++.|++.+=|=|=.-....+.-..+|+.+.+.= .+.++.+. +
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~-----~~~v~vgG------G------------------ 86 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAAW-----PLGLWVDG------G------------------ 86 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHhC-----CCCEEEec------C------------------
Confidence 444566666677999887766544345566677888887720 11221110 0
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecCCch
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPR 251 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP~k~ 251 (299)
++.++.+++.|++||++|++=+.-+. . +++.++++++|-+++++=-.-++
T Consensus 87 -------------ir~~edv~~~l~~Ga~~viigt~~~~------~-~~~~~~~~~~~~~~iivslD~~~ 136 (233)
T cd04723 87 -------------IRSLENAQEWLKRGASRVIVGTETLP------S-DDDEDRLAALGEQRLVLSLDFRG 136 (233)
T ss_pred -------------cCCHHHHHHHHHcCCCeEEEcceecc------c-hHHHHHHHhcCCCCeEEEEeccC
Confidence 12267779999999999999665332 2 46777777776557776555433
No 298
>PRK05660 HemN family oxidoreductase; Provisional
Probab=72.46 E-value=20 Score=35.18 Aligned_cols=119 Identities=12% Similarity=0.078 Sum_probs=82.3
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCc-eecCC--cHHHHHHH-hC-C-
Q 022296 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIR-NG-P- 100 (299)
Q Consensus 27 T~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV-~v~~G--tlfE~a~~-qg-~- 100 (299)
|.-++=|=+..-.+..++++++....+.++.+-.==|.-.-|...-+++++.++++|| .++-| ++-...+. -+ +
T Consensus 61 ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~ 140 (378)
T PRK05660 61 SIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIH 140 (378)
T ss_pred EEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCC
Confidence 5555555433336788999999998876543211112233456667899999999999 88888 66554442 12 1
Q ss_pred --chHHHHHHHHHHcCCC--EEEecCCcccCChhHHHHHHHHHHHcCCc
Q 022296 101 --SAFKEYVEDCKQVGFD--TIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (299)
Q Consensus 101 --~~~~~yl~~~k~lGF~--~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (299)
+.+.+-++.+++.||+ .+-+.-|.=.-+.+++.+-++.+.+.|..
T Consensus 141 ~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~p~ 189 (378)
T PRK05660 141 GPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDDLRQAIALNPP 189 (378)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhcCCC
Confidence 2355567888999998 46777888788888899999999987654
No 299
>PRK14847 hypothetical protein; Provisional
Probab=72.31 E-value=61 Score=32.06 Aligned_cols=142 Identities=11% Similarity=0.041 Sum_probs=88.7
Q ss_pred cEEEeeCcccccCC-------hh----HHHHHHHHHHhCCc-------eecCCcHHHHHHHhCCchHHHHHHHHHHc-C-
Q 022296 55 DGLKFSGGSHSLMP-------KP----FIEEVVKRAHQHDV-------YVSTGDWAEHLIRNGPSAFKEYVEDCKQV-G- 114 (299)
Q Consensus 55 D~lKfg~GTs~l~p-------~~----~l~eKI~l~~~~gV-------~v~~GtlfE~a~~qg~~~~~~yl~~~k~l-G- 114 (299)
+.+-+...||-++- ++ .+.+-++++++++. .|..| +|-+-+-+++-+.++.+.+.+. |
T Consensus 125 ~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~--~EDasRad~dfL~~~~~~a~~~~ga 202 (333)
T PRK14847 125 AIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYS--PETFSLAELDFAREVCDAVSAIWGP 202 (333)
T ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEe--eecCCCCCHHHHHHHHHHHHHHhCC
Confidence 45666666665432 22 24456778999943 23332 2344444444556666665444 4
Q ss_pred ----CCEEEecCCcccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCcc
Q 022296 115 ----FDTIELNVGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEI 189 (299)
Q Consensus 115 ----F~~IEISdGti~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (299)
-+.|-++|-.--+.+.+-.++|+.++++ +=....++++.+. .+
T Consensus 203 ~r~~a~~i~l~DTVG~~~P~~~~~~i~~l~~~~~~~~~v~i~~H~H-nD------------------------------- 250 (333)
T PRK14847 203 TPQRKMIINLPATVESSTANVYADQIEWMHRSLARRDCIVLSVHPH-ND------------------------------- 250 (333)
T ss_pred CccCCcEEEeCCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEEeC-CC-------------------------------
Confidence 6779999999999999888999998873 0001224455321 11
Q ss_pred chhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHh
Q 022296 190 EVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 236 (299)
Q Consensus 190 ~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~ 236 (299)
.... +..+...++|||+.| ++- |+=+..||...+.+-..+.
T Consensus 251 -~GlA---~ANslaA~~aGa~~i--~~tv~G~GERaGNa~lE~v~~~L~ 293 (333)
T PRK14847 251 -RGTA---VAAAELAVLAGAERI--EGCLFGNGERTGNVDLVALALNLE 293 (333)
T ss_pred -CchH---HHHHHHHHHhCCCEE--EeeCCcCCccccchhHHHHHHHHH
Confidence 2334 666788999999995 554 8877789988777655554
No 300
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=72.01 E-value=93 Score=29.88 Aligned_cols=96 Identities=21% Similarity=0.337 Sum_probs=56.5
Q ss_pred chhHHHHHHHhh---cccccEEEeeCcccccCChhHHHHHHHHHHhCC---c----eecC-CcHHHHHHHhCCchHHHHH
Q 022296 39 SHNVLEDIFESM---GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD---V----YVST-GDWAEHLIRNGPSAFKEYV 107 (299)
Q Consensus 39 g~~~l~DlLe~a---g~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g---V----~v~~-GtlfE~a~~qg~~~~~~yl 107 (299)
....++.+++.+ +.-.--+-|.+|=-.+.|.+.+++.+++++++| + .+.| |+++. ++.+
T Consensus 40 ~~~~~~~~i~~~~~~~~~~~~i~~~GGEPll~~~~~~~~~~~~~~~~~~~~~~~~~~i~TNG~ll~----------~~~~ 109 (370)
T PRK13758 40 RDEVLESMVKRVLNEAEGHCSFAFQGGEPTLAGLEFFEELMELQRKHNYKNLKIYNSLQTNGTLID----------ESWA 109 (370)
T ss_pred CHHHHHHHHHHHHhccCCceEEEEECCccccCChHHHHHHHHHHHHhccCCCeEEEEEEecCEecC----------HHHH
Confidence 344555555432 122234568889888888788899999999986 3 2345 76653 2333
Q ss_pred HHHHHcCCCEEEecCCcc-cC------------ChhHHHHHHHHHHHcCCc
Q 022296 108 EDCKQVGFDTIELNVGSL-EI------------PEETLLRYVRLVKSAGLK 145 (299)
Q Consensus 108 ~~~k~lGF~~IEISdGti-~i------------~~~~r~~lI~~~~~~G~~ 145 (299)
+.+++.|+ .|-||=... ++ +.+.-.+-|+.+++.|..
T Consensus 110 ~~l~~~~~-~v~iSlDg~~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~~~~ 159 (370)
T PRK13758 110 KFLSENKF-LVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKYKVE 159 (370)
T ss_pred HHHHHcCc-eEEEeecCCHHHhccccCCCCCCccHHHHHHHHHHHHHhCCC
Confidence 44555676 788873332 21 122234556777776654
No 301
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=71.82 E-value=12 Score=34.28 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHcCCCEEEecC--CcccCChhHHHHHHHHHHH
Q 022296 101 SAFKEYVEDCKQVGFDTIELNV--GSLEIPEETLLRYVRLVKS 141 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISd--Gti~i~~~~r~~lI~~~~~ 141 (299)
+....|...|+.+|++.|=+-+ |+...-. .++|+++++
T Consensus 134 e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~---~e~i~~Vk~ 173 (205)
T TIGR01769 134 EIAAAYCLAAKYFGMKWVYLEAGSGASYPVN---PETISLVKK 173 (205)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCCCCCCC---HHHHHHHHH
Confidence 4578899999999999765544 4522222 456666666
No 302
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=71.78 E-value=17 Score=35.25 Aligned_cols=118 Identities=17% Similarity=0.155 Sum_probs=77.7
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccc-cCChhHHHHHHHHHHhCCc-eecCC--cHHHHHH-HhC--
Q 022296 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHS-LMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLI-RNG-- 99 (299)
Q Consensus 27 T~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~-l~p~~~l~eKI~l~~~~gV-~v~~G--tlfE~a~-~qg-- 99 (299)
|..++=|=+..-.+..++++++....+.++- .+.-.+. .-|...=.++++.++++|| .++.| ++=+..+ .-|
T Consensus 54 ~i~~GGGtPs~l~~~~l~~ll~~i~~~~~~~-~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~ 132 (360)
T TIGR00539 54 SIFIGGGTPNTLSVEAFERLFESIYQHASLS-DDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQ 132 (360)
T ss_pred EEEeCCCchhcCCHHHHHHHHHHHHHhCCCC-CCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCC
Confidence 6666666443226789999999887776421 1111222 3344445789999999999 77777 5644333 222
Q ss_pred --CchHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHcCCc
Q 022296 100 --PSAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (299)
Q Consensus 100 --~~~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~G~~ 145 (299)
.+.+.+-++.+++.||+.| -+.-|.-.-+.++..+.++.+.+.|..
T Consensus 133 ~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~ 182 (360)
T TIGR00539 133 HSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAKELPIN 182 (360)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHHHccCCC
Confidence 1245556778889999865 446777677788888889998887654
No 303
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=71.49 E-value=28 Score=33.01 Aligned_cols=74 Identities=22% Similarity=0.217 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC------------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEI------------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i------------~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~ 169 (299)
.+.++.+.+.+.|+|+||++=++-.. .++.-.++++.+++.= -+| +.+| .+ + +
T Consensus 114 ~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~P-v~vK--l~---~--~----- 178 (299)
T cd02940 114 DWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV--KIP-VIAK--LT---P--N----- 178 (299)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc--CCC-eEEE--CC---C--C-----
Confidence 45556666667799999998886543 3556677888887631 123 6666 22 0 1
Q ss_pred cccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEE
Q 022296 170 YVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMI 214 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIi 214 (299)
...+ .+.++...++||+.|++
T Consensus 179 ---------------------~~~~---~~~a~~~~~~Gadgi~~ 199 (299)
T cd02940 179 ---------------------ITDI---REIARAAKEGGADGVSA 199 (299)
T ss_pred ---------------------chhH---HHHHHHHHHcCCCEEEE
Confidence 1223 45567788999999984
No 304
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=71.39 E-value=34 Score=32.13 Aligned_cols=148 Identities=18% Similarity=0.203 Sum_probs=85.1
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCC---ceecCCcHHHHHHHhCCc-hHHHHHHHHHHcCCCE
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD---VYVSTGDWAEHLIRNGPS-AFKEYVEDCKQVGFDT 117 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g---V~v~~GtlfE~a~~qg~~-~~~~yl~~~k~lGF~~ 117 (299)
.+-+.|..+| ||.+=+||+.+. |.+ .+-++.+.+.+ .... .|.-. -..+-. .-+.-++.+.+.|.+.
T Consensus 24 ~i~~~L~~~G--v~~IE~G~~~~~--~~~--~~~~~~~~~~~~~~~~~~--~~~~~-~~~~i~~~~~~~~~~a~~~g~~~ 94 (273)
T cd07941 24 RIARKLDELG--VDYIEGGWPGSN--PKD--TEFFARAKKLKLKHAKLA--AFGST-RRAGVKAEEDPNLQALLEAGTPV 94 (273)
T ss_pred HHHHHHHHcC--CCEEEecCCcCC--HHH--HHHHHHHHHcCCCCcEEE--EEecc-cccCCCccchHHHHHHHhCCCCE
Confidence 4555677777 899999986533 322 22223332322 2211 11100 001100 0124577788999999
Q ss_pred EEecCCcc--------cCC----hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccC
Q 022296 118 IELNVGSL--------EIP----EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLAS 185 (299)
Q Consensus 118 IEISdGti--------~i~----~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~ 185 (299)
|-|...+- ..+ .+.-.++|+.+++.|++|. ++... ..+ . +
T Consensus 95 i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~--~~~~~-~~d-----~---------~----------- 146 (273)
T cd07941 95 VTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVI--FDAEH-FFD-----G---------Y----------- 146 (273)
T ss_pred EEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEE--EeEEe-ccc-----c---------C-----------
Confidence 99864432 122 2234678899999998642 22210 000 0 0
Q ss_pred CCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHh
Q 022296 186 NPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 236 (299)
Q Consensus 186 ~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~ 236 (299)
..+++.+ ++.+++..++|++.|. |.|..|...+..+..+++
T Consensus 147 --~~~~~~~---~~~~~~~~~~g~~~i~-----l~DT~G~~~P~~v~~lv~ 187 (273)
T cd07941 147 --KANPEYA---LATLKAAAEAGADWLV-----LCDTNGGTLPHEIAEIVK 187 (273)
T ss_pred --CCCHHHH---HHHHHHHHhCCCCEEE-----EecCCCCCCHHHHHHHHH
Confidence 0126677 7888888999999764 789999999999988885
No 305
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=71.18 E-value=24 Score=35.52 Aligned_cols=121 Identities=12% Similarity=0.104 Sum_probs=81.5
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCc-eecCC--cHHHHHHHh-C---
Q 022296 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G--- 99 (299)
Q Consensus 27 T~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV-~v~~G--tlfE~a~~q-g--- 99 (299)
+..+.=|-+..-.+..++++++..-.+.++.+-.-=|.-.-|...-++++++++++|+ .++.| ++-+..+.. +
T Consensus 106 ~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~ 185 (453)
T PRK13347 106 QLHWGGGTPTILNPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQ 185 (453)
T ss_pred EEEEcCcccccCCHHHHHHHHHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCC
Confidence 4445555433226789999999988876542211112234455566899999999999 78778 675544421 1
Q ss_pred -CchHHHHHHHHHHcCCCE--EEecCCcccCChhHHHHHHHHHHHcCCccc
Q 022296 100 -PSAFKEYVEDCKQVGFDT--IELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (299)
Q Consensus 100 -~~~~~~yl~~~k~lGF~~--IEISdGti~i~~~~r~~lI~~~~~~G~~v~ 147 (299)
.+.+.+-++.+++.||+. +-+.-|.=.-+.++..+-++.+.+.|..-+
T Consensus 186 ~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i 236 (453)
T PRK13347 186 PEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIALSPDRI 236 (453)
T ss_pred CHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 124667788889999984 556667777788888888999998776533
No 306
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=71.14 E-value=12 Score=34.27 Aligned_cols=71 Identities=17% Similarity=0.298 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHhCCceecC--CcH----HHHHHHhCCc----hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHH
Q 022296 70 PFIEEVVKRAHQHDVYVST--GDW----AEHLIRNGPS----AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLV 139 (299)
Q Consensus 70 ~~l~eKI~l~~~~gV~v~~--Gtl----fE~a~~qg~~----~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~ 139 (299)
..+...++.+|++|+++.+ |+| +..++ .++. -++.-++.+++.|||.|.|.--....+.+....+++.+
T Consensus 46 ~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~~~-~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~~~~~~~fv~~L 124 (253)
T cd06545 46 SELNSVVNAAHAHNVKILISLAGGSPPEFTAAL-NDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVTFGDYLVFIRAL 124 (253)
T ss_pred HHHHHHHHHHHhCCCEEEEEEcCCCCCcchhhh-cCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCccHhHHHHHHHHH
Confidence 4577889999999998875 543 22222 2222 35788889999999999997655444456667777777
Q ss_pred HH
Q 022296 140 KS 141 (299)
Q Consensus 140 ~~ 141 (299)
++
T Consensus 125 r~ 126 (253)
T cd06545 125 YA 126 (253)
T ss_pred HH
Confidence 77
No 307
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=70.60 E-value=26 Score=34.72 Aligned_cols=49 Identities=33% Similarity=0.388 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc------------CChhHHHHHHHHHHHcCCcccceeeee
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLE------------IPEETLLRYVRLVKSAGLKAKPKFAVM 153 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~------------i~~~~r~~lI~~~~~~G~~v~~E~gvK 153 (299)
.+.+|.+.+++.|+|+||++=++-. -.++.-.++++.+++. .-+| +.+|
T Consensus 114 ~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~--~~~P-v~vK 174 (420)
T PRK08318 114 EWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRG--SRLP-VIVK 174 (420)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhc--cCCc-EEEE
Confidence 5778888889999999999977643 2456667888888775 1244 5565
No 308
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=70.59 E-value=63 Score=29.78 Aligned_cols=99 Identities=13% Similarity=0.190 Sum_probs=58.3
Q ss_pred HHHHHHHhhcc-----cccEEEeeCcccccCChhHHHHHHHHHHhCCce---ec-C-CcHHHHHHHhCCch-----HHHH
Q 022296 42 VLEDIFESMGQ-----FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY---VS-T-GDWAEHLIRNGPSA-----FKEY 106 (299)
Q Consensus 42 ~l~DlLe~ag~-----yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~---v~-~-GtlfE~a~~qg~~~-----~~~y 106 (299)
.|+|+|+.+.+ +|+ +|-+-+. .-++.+.++..+++++++|.. +. . -...+.+-...|+. ...+
T Consensus 115 tL~evl~~~~~~~~~l~iE-iK~~~~~-~~~~~~~~~~v~~~l~~~~~~~~~v~~s~~~~~~~~~~~~p~~~~~~~~~~~ 192 (252)
T cd08574 115 SLAELLRLAKKHNKSVIFD-LRRPPPN-HPYYQSYVNITLDTILASGIPQHQVFWLPDEYRALVRKVAPGFQQVSGRKLP 192 (252)
T ss_pred CHHHHHHHHHHcCCeEEEE-ecCCccc-CccHHHHHHHHHHHHHHcCCCcccEEEccHHHHHHHHHHCCCCeEeeccccc
Confidence 78888887754 233 4743321 123345778899999999862 22 2 12334444444431 1233
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022296 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
....+++|++.+-++...++ .++|+.++++|++|.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~g~~v~~ 228 (252)
T cd08574 193 VESLRENGISRLNLEYSQLS------AQEIREYSKANISVNL 228 (252)
T ss_pred hHHHHhcCCeEEccCcccCC------HHHHHHHHHCCCEEEE
Confidence 45556788887766655442 3689999998888554
No 309
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=70.59 E-value=43 Score=31.44 Aligned_cols=96 Identities=13% Similarity=0.070 Sum_probs=66.1
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhC-CceecCCc----HHHHHHHh--CC------------ch
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGD----WAEHLIRN--GP------------SA 102 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~Gt----lfE~a~~q--g~------------~~ 102 (299)
..+.+++.-+++|| +|.+...+.+++.+++.+...++. +++++-.| -+|.|+.. |. ++
T Consensus 31 ~A~~~~~~GAdiID---IG~~~~~~~~~ee~~r~v~~i~~~~~~piSIDT~~~~v~e~aL~~~~G~~iINsIs~~~~~e~ 107 (252)
T cd00740 31 VARQQVEGGAQILD---LNVDYGGLDGVSAMKWLLNLLATEPTVPLMLDSTNWEVIEAGLKCCQGKCVVNSINLEDGEER 107 (252)
T ss_pred HHHHHHHCCCCEEE---ECCCCCCCCHHHHHHHHHHHHHHhcCCcEEeeCCcHHHHHHHHhhCCCCcEEEeCCCCCCccc
Confidence 44555666677777 588777666677778887778876 99999865 48888875 31 23
Q ss_pred HHHHHHHHHHcCCCEEEecCC--cccCChhHHHHHHHHHH
Q 022296 103 FKEYVEDCKQVGFDTIELNVG--SLEIPEETLLRYVRLVK 140 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdG--ti~i~~~~r~~lI~~~~ 140 (299)
+++.++.+++.|...|=+... -+..+.+.|.++.++..
T Consensus 108 ~~~~~~~~~~~~~~vV~m~~~~~g~p~t~~~~~~~~~~~~ 147 (252)
T cd00740 108 FLKVARLAKEHGAAVVVLAFDEQGQAKTRDKKVEIAERAY 147 (252)
T ss_pred cHHHHHHHHHhCCCEEEeccCCCCCCCCHHHHHHHHHHHH
Confidence 678889999999999987752 23444455555554443
No 310
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=70.49 E-value=14 Score=34.67 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccc
Q 022296 71 FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (299)
Q Consensus 71 ~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~ 147 (299)
.||+|+.- | .+..|+|... .+ ..-.+.+...|||.|-|.-=--.++.++...+|+.++..|..++
T Consensus 9 ~lk~~l~~----g-~~~~g~~~~~---~s----p~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~l 73 (256)
T PRK10558 9 KFKAALAA----K-QVQIGCWSAL---AN----PITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPV 73 (256)
T ss_pred HHHHHHHc----C-CceEEEEEcC---CC----cHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcE
Confidence 36666654 3 2334666531 11 24456677889999999999999999999999999998776543
No 311
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=70.35 E-value=33 Score=35.27 Aligned_cols=179 Identities=13% Similarity=0.104 Sum_probs=107.0
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccc----------------cCChhHHH-HHHHHHHhCCceecCCcHHHHHHHhCCc
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHS----------------LMPKPFIE-EVVKRAHQHDVYVSTGDWAEHLIRNGPS 101 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~----------------l~p~~~l~-eKI~l~~~~gV~v~~GtlfE~a~~qg~~ 101 (299)
-...++.+|+..|==+- +|.++. +.| .+- --..|++++||+.+.--|. -|.+
T Consensus 206 ~~~~i~~lL~~lGI~v~----~~lp~~~~~eL~~~~~~~~~c~~~P--~ls~aa~~Le~~~gvp~~~~P~P-----iGi~ 274 (457)
T CHL00073 206 VASQLTLELKRQGIKVS----GWLPSQRYTDLPSLGEGVYVCGVNP--FLSRTATTLMRRRKCKLIGAPFP-----IGPD 274 (457)
T ss_pred cHHHHHHHHHHcCCeEe----EEeCCCCHHHHHhhCcccEEEEcCc--chHHHHHHHHHHhCCceeecCCc-----CcHH
Confidence 35788899998874443 333211 111 122 2334445566544332222 3445
Q ss_pred hHHHHHHHHHHc-CCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccch
Q 022296 102 AFKEYVEDCKQV-GFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDK 180 (299)
Q Consensus 102 ~~~~yl~~~k~l-GF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~ 180 (299)
..+++++.+.++ |.. .-.+ .+++.+++..+.+.-... .|||... -.|
T Consensus 275 ~Td~fLr~Ia~~~G~~-------pe~l-~~Er~rl~dal~d~~~~L---~GKrvai-----~Gd---------------- 322 (457)
T CHL00073 275 GTRAWIEKICSVFGIE-------PQGL-EEREEQIWESLKDYLDLV---RGKSVFF-----MGD---------------- 322 (457)
T ss_pred HHHHHHHHHHHHhCcC-------HHHH-HHHHHHHHHHHHHHHHHH---CCCEEEE-----ECC----------------
Confidence 678888877765 622 2335 677778887777731111 2443210 011
Q ss_pred hcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCccc---HHHHHHHHhccCC-CceEEecCCchhHHHH
Q 022296 181 LFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLR---ADIIAKVIGRLGL-EKTMFEATNPRTSEWF 256 (299)
Q Consensus 181 ~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r---~d~i~~ii~~l~~-eklifEAP~k~qQ~~f 256 (299)
++.. +..++...+.|..-|.+ |....+..+. .+.+.++++..+. ..+|.|-++...|..+
T Consensus 323 ----------p~~~---i~LarfL~elGmevV~v---gt~~~~~~~~~~d~~~l~~~~~~~~~~~~vive~~D~~el~~~ 386 (457)
T CHL00073 323 ----------NLLE---ISLARFLIRCGMIVYEI---GIPYMDKRYQAAELALLEDTCRKMNVPMPRIVEKPDNYNQIQR 386 (457)
T ss_pred ----------CcHH---HHHHHHHHHCCCEEEEE---EeCCCChhhhHHHHHHHHHHhhhcCCCCcEEEeCCCHHHHHHH
Confidence 2334 66678888999999888 4443444443 3344455555665 5788999999999999
Q ss_pred HHHhCCCcccc-cCCCCchhhhh
Q 022296 257 IRRYGPKVNLF-VDHSQVMDLEC 278 (299)
Q Consensus 257 I~~fG~~VNLg-I~~~eVi~LE~ 278 (299)
|++..||+=++ + .+-++||+
T Consensus 387 i~~~~pDLlIgG~--~~~~Pl~~ 407 (457)
T CHL00073 387 IRELQPDLAITGM--AHANPLEA 407 (457)
T ss_pred HhhCCCCEEEccc--cccCchhh
Confidence 99999999987 8 56677764
No 312
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=70.33 E-value=9.6 Score=36.93 Aligned_cols=92 Identities=21% Similarity=0.368 Sum_probs=50.6
Q ss_pred cccccEEEeeCcccccCChhHHHHHHHHHHhCCceec-----C-C---cHHHHHHHhCCc----hHHHHHHHHHHcCCCE
Q 022296 51 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS-----T-G---DWAEHLIRNGPS----AFKEYVEDCKQVGFDT 117 (299)
Q Consensus 51 g~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~-----~-G---tlfE~a~~qg~~----~~~~yl~~~k~lGF~~ 117 (299)
=+|||..=. |.-..+..+. -.-|+.||+|||+|. . | .|++.++.++.+ -+++.++.|+-+|||.
T Consensus 26 W~yiD~fvy-wsh~~i~iP~--~~widaAHrnGV~vLGTiife~~~~~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDG 102 (311)
T PF03644_consen 26 WQYIDIFVY-WSHGLITIPP--AGWIDAAHRNGVKVLGTIIFEWGGGAEWCEELLEKDEDGSFPYADKLIEIAKYYGFDG 102 (311)
T ss_dssp GGG-SEEEE-T-TBSSE-----HHHHHHHHHTT--EEEEEEEEEE--HHHHHHHT---TTS--HHHHHHHHHHHHHT--E
T ss_pred ccceeeEee-cccccccCCC--chhHHHHHhcCceEEEEEEecCCchHHHHHHHHcCCcccccHHHHHHHHHHHHcCCCc
Confidence 368887533 5544444222 357899999999885 2 2 388888885432 2789999999999998
Q ss_pred EEecCCccc---CChhHHHHHHHHHHHcCCc
Q 022296 118 IELNVGSLE---IPEETLLRYVRLVKSAGLK 145 (299)
Q Consensus 118 IEISdGti~---i~~~~r~~lI~~~~~~G~~ 145 (299)
.=|+--+-- -..+.....++.+++..-+
T Consensus 103 w~iN~E~~~~~~~~~~~l~~F~~~l~~~~~~ 133 (311)
T PF03644_consen 103 WLINIETPLSGPEDAENLIDFLKYLRKEAHE 133 (311)
T ss_dssp EEEEEEESSTTGGGHHHHHHHHHHHHHHHHH
T ss_pred eEEEecccCCchhHHHHHHHHHHHHHHHhhc
Confidence 655422211 2234455666666665443
No 313
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=70.23 E-value=29 Score=33.48 Aligned_cols=81 Identities=28% Similarity=0.379 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHcC--CCEEEecCCcccCC-------hhHHHHHHHHHHHc-C-C-cccceeeeecCCCCCCCcccccccc
Q 022296 102 AFKEYVEDCKQVG--FDTIELNVGSLEIP-------EETLLRYVRLVKSA-G-L-KAKPKFAVMFNKSDIPSDRDRAFGA 169 (299)
Q Consensus 102 ~~~~yl~~~k~lG--F~~IEISdGti~i~-------~~~r~~lI~~~~~~-G-~-~v~~E~gvK~~~sevg~~~d~~~~~ 169 (299)
..++|.+.+++++ +|+||++=++-..+ .+.-.++++.+++. . + +-+| +.+|-.
T Consensus 146 ~~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~P-v~vKl~-------------- 210 (327)
T cd04738 146 AVEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVP-LLVKIA-------------- 210 (327)
T ss_pred cHHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCC-eEEEeC--------------
Confidence 5788998888877 99999987655432 34555777777763 0 0 0123 445421
Q ss_pred cccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc
Q 022296 170 YVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD 217 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar 217 (299)
|. .+.+++ .+.++...++||+.|.+=.+
T Consensus 211 ---~~--------------~~~~~~---~~ia~~l~~aGad~I~~~n~ 238 (327)
T cd04738 211 ---PD--------------LSDEEL---EDIADVALEHGVDGIIATNT 238 (327)
T ss_pred ---CC--------------CCHHHH---HHHHHHHHHcCCcEEEEECC
Confidence 11 112345 66678888999999987765
No 314
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=70.23 E-value=65 Score=30.22 Aligned_cols=122 Identities=21% Similarity=0.227 Sum_probs=81.8
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~---GtlfE~a~~qg~~~~~~yl~~~k~lGF~~I 118 (299)
+.+-..+.-++++-++ .+.|.+.++.-++-+|++|+.++- |.| .+++=.++.+++|.+.+
T Consensus 72 e~~ma~~aGAd~~tV~-------g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~----------~~~~~~~~l~~~gvd~~ 134 (217)
T COG0269 72 EARMAFEAGADWVTVL-------GAADDATIKKAIKVAKEYGKEVQIDLIGVW----------DPEQRAKWLKELGVDQV 134 (217)
T ss_pred HHHHHHHcCCCEEEEE-------ecCCHHHHHHHHHHHHHcCCeEEEEeecCC----------CHHHHHHHHHHhCCCEE
Confidence 4444555555555443 467888999999999999998874 434 34445566788999999
Q ss_pred EecCCcc----cCCh-hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhh
Q 022296 119 ELNVGSL----EIPE-ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGV 193 (299)
Q Consensus 119 EISdGti----~i~~-~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (299)
.+--|.- -.+. .+.++-|++..+.|++ +.+- +. ++++.
T Consensus 135 ~~H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~----vAVa---------GG------------------------I~~~~ 177 (217)
T COG0269 135 ILHRGRDAQAAGKSWGEDDLEKIKKLSDLGAK----VAVA---------GG------------------------ITPED 177 (217)
T ss_pred EEEecccHhhcCCCccHHHHHHHHHhhccCce----EEEe---------cC------------------------CCHHH
Confidence 9987754 2233 4556677777776654 3441 00 12344
Q ss_pred hhhhHHHHHHHHHccCcEEEEeccccccCCCc
Q 022296 194 GINKSRRAERCLEAGADMIMIDSDDVCKHADS 225 (299)
Q Consensus 194 ~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~ 225 (299)
+ ..+...|++.||+ ||.|+++.+-
T Consensus 178 i-------~~~~~~~~~ivIv-GraIt~a~dp 201 (217)
T COG0269 178 I-------PLFKGIGADIVIV-GRAITGAKDP 201 (217)
T ss_pred H-------HHHhcCCCCEEEE-CchhcCCCCH
Confidence 4 8889999887766 8889988763
No 315
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=70.17 E-value=30 Score=31.82 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=22.2
Q ss_pred HHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHH
Q 022296 199 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVI 235 (299)
Q Consensus 199 ~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii 235 (299)
+.+....+|||+.+++ ++.||.++ + ..+.+.++.
T Consensus 179 eni~~l~~aGAd~vVv-GSaIf~~~-d-~~~~i~~l~ 212 (220)
T PRK08883 179 DNIREIAEAGADMFVA-GSAIFGQP-D-YKAVIDEMR 212 (220)
T ss_pred HHHHHHHHcCCCEEEE-eHHHhCCC-C-HHHHHHHHH
Confidence 4458889999999988 45688654 2 234444443
No 316
>PRK09061 D-glutamate deacylase; Validated
Probab=70.15 E-value=27 Score=35.77 Aligned_cols=97 Identities=13% Similarity=0.070 Sum_probs=65.0
Q ss_pred ccEEEeeCcccccCChhHHHHHHHHHHhCCceecC----CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc--cC
Q 022296 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST----GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--EI 127 (299)
Q Consensus 54 ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~----GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti--~i 127 (299)
.+++|.+-+-..-.+.+.|.+-.+.+++||..+.. .++....-.- ..+++.++.+++.|+. +-||-=+. ..
T Consensus 183 a~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~~~~~e~--~av~~~i~lA~~~G~r-v~IsHlss~g~~ 259 (509)
T PRK09061 183 ALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLSNVDPRSSV--DAYQELIAAAAETGAH-MHICHVNSTSLR 259 (509)
T ss_pred CCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCcccCCchhHH--HHHHHHHHHHHHhCCC-EEEEeeccCCcc
Confidence 58888753222234777899999999999998754 1221100001 1578899999999975 44441111 12
Q ss_pred ChhHHHHHHHHHHHcCCcccceeeee
Q 022296 128 PEETLLRYVRLVKSAGLKAKPKFAVM 153 (299)
Q Consensus 128 ~~~~r~~lI~~~~~~G~~v~~E~gvK 153 (299)
+.++-+++|+++++.|..|..|+..-
T Consensus 260 ~~~~~le~I~~Ar~~Gi~Vt~e~~P~ 285 (509)
T PRK09061 260 DIDRCLALVEKAQAQGLDVTTEAYPY 285 (509)
T ss_pred cHHHHHHHHHHHHHcCCcEEEEecCc
Confidence 44666899999999999999998653
No 317
>PRK05927 hypothetical protein; Provisional
Probab=70.05 E-value=56 Score=32.14 Aligned_cols=114 Identities=14% Similarity=0.244 Sum_probs=75.6
Q ss_pred hhHHHHHHHhhccc-ccEEEeeCcccccCChhHHHHHHHHHHhC--CceecCCcHHHHHH---HhCCchHHHHHHHHHHc
Q 022296 40 HNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLI---RNGPSAFKEYVEDCKQV 113 (299)
Q Consensus 40 ~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~GtlfE~a~---~qg~~~~~~yl~~~k~l 113 (299)
+.++.+.++.+.++ +.-+=|..|-..=.+-+.+.+-++..|+. ++.+..=+-.|+++ .-| -..++.++..|+.
T Consensus 78 ~eei~~~a~~~~~~G~~~i~i~gG~~p~~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G-~~~~e~l~~Lk~a 156 (350)
T PRK05927 78 FDEFRSLMQRYVSAGVKTVLLQGGVHPQLGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSG-ISTEQALERLWDA 156 (350)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCCCCCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcC-CCHHHHHHHHHHc
Confidence 34444444333222 33333566666556667778888888864 45444324555552 223 4689999999999
Q ss_pred CCC-----EEEecCCcc-------cCChhHHHHHHHHHHHcCCcccceeeeecCC
Q 022296 114 GFD-----TIELNVGSL-------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNK 156 (299)
Q Consensus 114 GF~-----~IEISdGti-------~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~ 156 (299)
|.+ ..|+++..+ ..+.++|++.|+.|++.|+++-+ |.-++.
T Consensus 157 Gl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~lGi~~~s--g~l~G~ 209 (350)
T PRK05927 157 GQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRLGFRSTA--TMMFGH 209 (350)
T ss_pred CcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHcCCCcCc--eeEEee
Confidence 998 899998544 56779999999999999999877 554443
No 318
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=69.83 E-value=41 Score=32.18 Aligned_cols=111 Identities=18% Similarity=0.213 Sum_probs=82.8
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCC
Q 022296 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASN 186 (299)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
+.+++..|-|+|=+=-. -|++++..++...+++.||.|+.|++-
T Consensus 122 I~~Ar~~GADavLLI~~--~L~~~~l~el~~~A~~LGm~~LVEVh~---------------------------------- 165 (254)
T COG0134 122 IYEARAAGADAVLLIVA--ALDDEQLEELVDRAHELGMEVLVEVHN---------------------------------- 165 (254)
T ss_pred HHHHHHcCcccHHHHHH--hcCHHHHHHHHHHHHHcCCeeEEEECC----------------------------------
Confidence 67888999998754332 467888899999999999999999865
Q ss_pred CccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCce-EEecCC-chhHHHHHHHhCCCc
Q 022296 187 PEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEATN-PRTSEWFIRRYGPKV 264 (299)
Q Consensus 187 ~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~ekl-ifEAP~-k~qQ~~fI~~fG~~V 264 (299)
.+++ ++.+++||..|=|.-|++-+=. +.-+.-.+++..+|-+.+ |=|.=- ...+...+.++|.|-
T Consensus 166 ----~eEl-------~rAl~~ga~iIGINnRdL~tf~--vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a 232 (254)
T COG0134 166 ----EEEL-------ERALKLGAKIIGINNRDLTTLE--VDLETTEKLAPLIPKDVILISESGISTPEDVRRLAKAGADA 232 (254)
T ss_pred ----HHHH-------HHHHhCCCCEEEEeCCCcchhe--ecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHcCCCE
Confidence 1334 8899999999999999774432 233446778888886554 446553 367888888888876
Q ss_pred cc
Q 022296 265 NL 266 (299)
Q Consensus 265 NL 266 (299)
=|
T Consensus 233 ~L 234 (254)
T COG0134 233 FL 234 (254)
T ss_pred EE
Confidence 66
No 319
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=69.68 E-value=29 Score=29.99 Aligned_cols=119 Identities=18% Similarity=0.272 Sum_probs=66.5
Q ss_pred CCcccccccCCCCCCCCCCCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHh
Q 022296 2 SGYYYGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQ 81 (299)
Q Consensus 2 ~~~~~~~~~f~~~~~R~~KPR~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~ 81 (299)
.|||.-|..-..-. +.+-...++|+|.=-.+.+. +. |.- .. +.+ .+.+...+.+..+++
T Consensus 2 v~y~~~w~~~~~~~--~~~~~~~~~thvi~~f~~v~-~~----------~~~---~~--~~~---~~~~~~~~~i~~l~~ 60 (210)
T cd00598 2 ICYYDGWSSGRGPD--PTDIPLSLCTHIIYAFAEIS-SD----------GSL---NL--FGD---KSEEPLKGALEELAS 60 (210)
T ss_pred EEEEccccccCCCC--hhhCCcccCCEEEEeeEEEC-CC----------CCE---ec--ccC---cccHHHHHHHHHHHH
Confidence 36677775433211 46666678888875554332 00 000 00 111 123346667777777
Q ss_pred C--CceecC--CcHHHH---HHHhCCc----hHHHHHHHHHHcCCCEEEecCCcccCC----hhHHHHHHHHHHH
Q 022296 82 H--DVYVST--GDWAEH---LIRNGPS----AFKEYVEDCKQVGFDTIELNVGSLEIP----EETLLRYVRLVKS 141 (299)
Q Consensus 82 ~--gV~v~~--GtlfE~---a~~qg~~----~~~~yl~~~k~lGF~~IEISdGti~i~----~~~r~~lI~~~~~ 141 (299)
. |++|.+ |+|-.. .+..++. -++...+.+++.|||.|.|.=-..... .+....+++.+++
T Consensus 61 ~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~ 135 (210)
T cd00598 61 KKPGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRS 135 (210)
T ss_pred hCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHH
Confidence 6 887775 653221 1222222 357778888999999999976554444 2556667776666
No 320
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=69.53 E-value=38 Score=32.89 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=57.0
Q ss_pred EEeeCcccccCChhHHHHHHHHHHhC-CceecC--C-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-------
Q 022296 57 LKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVST--G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL------- 125 (299)
Q Consensus 57 lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~--G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti------- 125 (299)
.|=|+|++.+..++.+.+.++-.+++ +++|+- - +|-... .. ....++.+.+.+.|.++|.|.-.|.
T Consensus 96 ~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~-~~--~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg 172 (318)
T TIGR00742 96 QNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLD-SY--EFLCDFVEIVSGKGCQNFIVHARKAWLSGLSP 172 (318)
T ss_pred CCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcc-hH--HHHHHHHHHHHHcCCCEEEEeCCchhhcCCCc
Confidence 56688999999999999999999875 665553 1 331110 00 1455788899999999999999984
Q ss_pred ----cCChhHHHHHHHHHHH
Q 022296 126 ----EIPEETLLRYVRLVKS 141 (299)
Q Consensus 126 ----~i~~~~r~~lI~~~~~ 141 (299)
.+++-++ +.|+++++
T Consensus 173 ~~~~~~~~~~~-~~i~~vk~ 191 (318)
T TIGR00742 173 KENREIPPLRY-ERVYQLKK 191 (318)
T ss_pred cccccCCchhH-HHHHHHHH
Confidence 1233233 67888777
No 321
>PRK06256 biotin synthase; Validated
Probab=69.47 E-value=51 Score=31.39 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=44.0
Q ss_pred HHHHHHHHhCCceecC-C--cHHHHHHHh--CCchHHHH---HHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHHH
Q 022296 73 EEVVKRAHQHDVYVST-G--DWAEHLIRN--GPSAFKEY---VEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVKS 141 (299)
Q Consensus 73 ~eKI~l~~~~gV~v~~-G--tlfE~a~~q--g~~~~~~y---l~~~k~lGF~~IEISdGti---~i~~~~r~~lI~~~~~ 141 (299)
++.++..+++|+..+. | | -+..+.+ ....++++ ++.+++.|+ +++.|.+ .-+.+++.+.++.+++
T Consensus 152 ~e~l~~LkeaG~~~v~~~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi---~v~~~~I~GlgEt~ed~~~~~~~l~~ 227 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHNLET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGI---EPCSGGIIGMGESLEDRVEHAFFLKE 227 (336)
T ss_pred HHHHHHHHHhCCCEEecCCcc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCC---eeccCeEEeCCCCHHHHHHHHHHHHh
Confidence 4667789999985554 3 4 3332221 12356655 456667786 4666654 3567889999999998
Q ss_pred cCCc
Q 022296 142 AGLK 145 (299)
Q Consensus 142 ~G~~ 145 (299)
.|..
T Consensus 228 l~~~ 231 (336)
T PRK06256 228 LDAD 231 (336)
T ss_pred CCCC
Confidence 8765
No 322
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=69.44 E-value=17 Score=41.38 Aligned_cols=40 Identities=3% Similarity=0.096 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc
Q 022296 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (299)
+-++.+.+.+.|.+.|=|.|-.--+.+..-.++|+.+++.
T Consensus 691 ~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~ 730 (1143)
T TIGR01235 691 YTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREK 730 (1143)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHh
Confidence 3355566688999999999999999999999999999984
No 323
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=69.27 E-value=22 Score=36.44 Aligned_cols=93 Identities=16% Similarity=0.184 Sum_probs=67.3
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCC
Q 022296 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASN 186 (299)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
+.+++.+|=|+|=+-...++ +++..++++.+++.||.++-|++-
T Consensus 125 I~ea~~~GADavLLI~~~L~--~~~l~~l~~~a~~lGl~~lvEvh~---------------------------------- 168 (454)
T PRK09427 125 IYLARYYGADAILLMLSVLD--DEQYRQLAAVAHSLNMGVLTEVSN---------------------------------- 168 (454)
T ss_pred HHHHHHcCCCchhHHHHhCC--HHHHHHHHHHHHHcCCcEEEEECC----------------------------------
Confidence 67899999999987766654 778889999999999999988865
Q ss_pred CccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCce-EEecC
Q 022296 187 PEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEAT 248 (299)
Q Consensus 187 ~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~ekl-ifEAP 248 (299)
.+++ ++.+++||..|-|-.|.+-.- ++..+.-.+++..+|.+.+ +-|.=
T Consensus 169 ----~~El-------~~al~~~a~iiGiNnRdL~t~--~vd~~~~~~l~~~ip~~~~~vseSG 218 (454)
T PRK09427 169 ----EEEL-------ERAIALGAKVIGINNRNLRDL--SIDLNRTRELAPLIPADVIVISESG 218 (454)
T ss_pred ----HHHH-------HHHHhCCCCEEEEeCCCCccc--eECHHHHHHHHhhCCCCcEEEEeCC
Confidence 1233 778999999999999865332 2334555666666664444 44443
No 324
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=69.11 E-value=30 Score=31.00 Aligned_cols=33 Identities=24% Similarity=0.462 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCC
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 144 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~ 144 (299)
.+++|++.++++|++.|-|+| .-+++.+++.|.
T Consensus 3 ~~~~~l~~l~~~g~dgi~v~~----------~g~~~~~k~~~~ 35 (233)
T PF01136_consen 3 ELEKYLDKLKELGVDGILVSN----------PGLLELLKELGP 35 (233)
T ss_pred HHHHHHHHHHhCCCCEEEEcC----------HHHHHHHHHhCC
Confidence 689999999999999999998 578888888844
No 325
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=68.93 E-value=9.4 Score=36.64 Aligned_cols=110 Identities=17% Similarity=0.209 Sum_probs=63.5
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcc------------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVGSL------------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti------------~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~ 168 (299)
+..++|++.|.++||++|-|++|=- ..+..+..++|+.+++.|-.|.==..- +.+ .+
T Consensus 32 ~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~-----~~~--~~---- 100 (273)
T PF10566_consen 32 ETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHS-----ETG--GN---- 100 (273)
T ss_dssp HHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEEC-----CHT--TB----
T ss_pred HHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeC-----Ccc--hh----
Confidence 3689999999999999999999975 578889999999999987543221111 100 00
Q ss_pred ccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEE
Q 022296 169 AYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMF 245 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklif 245 (299)
+.+ ++- ++ =+..+..=+.|+.=|=| |.++.++......-++|++.----+||.
T Consensus 101 --~~~---------------~~~-~~---~~~f~~~~~~Gv~GvKi---dF~~~d~Q~~v~~y~~i~~~AA~~~Lmv 153 (273)
T PF10566_consen 101 --VAN---------------LEK-QL---DEAFKLYAKWGVKGVKI---DFMDRDDQEMVNWYEDILEDAAEYKLMV 153 (273)
T ss_dssp --HHH---------------HHC-CH---HHHHHHHHHCTEEEEEE---E--SSTSHHHHHHHHHHHHHHHHTT-EE
T ss_pred --hHh---------------HHH-HH---HHHHHHHHHcCCCEEee---CcCCCCCHHHHHHHHHHHHHHHHcCcEE
Confidence 000 000 11 22235556677766655 4667777777777777776444444543
No 326
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=68.90 E-value=11 Score=34.09 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=52.9
Q ss_pred HHHHhCCc-eecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccc
Q 022296 77 KRAHQHDV-YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (299)
Q Consensus 77 ~l~~~~gV-~v~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~ 147 (299)
++++++|| .++. |-..++|+.+- ...+.++||+.+=++|++-..+.+.....++.++..|-.+.
T Consensus 139 ~~L~~~gi~~lvi~G~~t~~CV~~T-------a~~a~~~g~~v~vv~Da~~~~~~~~~~~al~~~~~~g~~v~ 204 (212)
T PTZ00331 139 QILKAHGVRRVFICGLAFDFCVLFT-------ALDAVKLGFKVVVLEDATRAVDPDAISKQRAELLEAGVILL 204 (212)
T ss_pred HHHHHCCCCEEEEEEeccCHHHHHH-------HHHHHHCCCEEEEeCcCccCCCHHHHHHHHHHHHHCCCEEE
Confidence 45678999 5554 66889998885 34567899999999999999999999999999999876643
No 327
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=68.83 E-value=21 Score=32.80 Aligned_cols=54 Identities=11% Similarity=0.118 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHH
Q 022296 71 FIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKS 141 (299)
Q Consensus 71 ~l~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~ 141 (299)
.-.+-++.|++++|.+.|| |.-|+ ..+.++|++.|-+-+...-. -..+|+.++.
T Consensus 96 ~~~~vi~~a~~~~i~~iPG~~TptEi-------------~~a~~~Ga~~vKlFPa~~~g----g~~~lk~l~~ 151 (212)
T PRK05718 96 LTPPLLKAAQEGPIPLIPGVSTPSEL-------------MLGMELGLRTFKFFPAEASG----GVKMLKALAG 151 (212)
T ss_pred CCHHHHHHHHHcCCCEeCCCCCHHHH-------------HHHHHCCCCEEEEccchhcc----CHHHHHHHhc
Confidence 3446777778888877777 56663 34678999999994433211 1356666665
No 328
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=68.83 E-value=1.1e+02 Score=29.38 Aligned_cols=169 Identities=11% Similarity=0.136 Sum_probs=98.9
Q ss_pred hHHHHHHHhhc--ccccEEEeeCcccccCChhHHHHHHHHHHhCC-c-eecCCc-HHHHHHHhCCc-hHHHHHHHHHHcC
Q 022296 41 NVLEDIFESMG--QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-V-YVSTGD-WAEHLIRNGPS-AFKEYVEDCKQVG 114 (299)
Q Consensus 41 ~~l~DlLe~ag--~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~g-V-~v~~Gt-lfE~a~~qg~~-~~~~yl~~~k~lG 114 (299)
..++.+++... .-|.-+-|++|--.+.+.+.|.+.++.+++.+ | .+-.|| .. ..+|. --++.++.+++.|
T Consensus 122 ~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~----v~~p~rit~ell~~L~~~g 197 (321)
T TIGR03822 122 AELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVP----VADPARVTPALIAALKTSG 197 (321)
T ss_pred HHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCc----ccChhhcCHHHHHHHHHcC
Confidence 45555555333 23677889999999998888999999999876 2 122343 11 11111 2357778888889
Q ss_pred CCEEEecCCcc---cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccch
Q 022296 115 FDTIELNVGSL---EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEV 191 (299)
Q Consensus 115 F~~IEISdGti---~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (299)
.. +-||--+. ++. ++-.+.|++++++|+.+.-...+- ..+ .++ .
T Consensus 198 ~~-v~i~l~~~h~~el~-~~~~~ai~~L~~~Gi~v~~q~vLl---~gv--Nd~--------------------------~ 244 (321)
T TIGR03822 198 KT-VYVALHANHARELT-AEARAACARLIDAGIPMVSQSVLL---RGV--NDD--------------------------P 244 (321)
T ss_pred Cc-EEEEecCCChhhcC-HHHHHHHHHHHHcCCEEEEEeeEe---CCC--CCC--------------------------H
Confidence 65 45654442 233 555689999999998866655441 111 111 4
Q ss_pred hhhhhhHHHHHHHHHccCcEEEEec----cc--cccCCCcccHHHHHHHHhccC---CCceEEecCC
Q 022296 192 GVGINKSRRAERCLEAGADMIMIDS----DD--VCKHADSLRADIIAKVIGRLG---LEKTMFEATN 249 (299)
Q Consensus 192 ~~~~~~i~~~~~dLeAGA~~VIiEa----rg--i~d~~G~~r~d~i~~ii~~l~---~eklifEAP~ 249 (299)
+.+ .+..+..++.|+...-+.- .| .|+-.-+--.++++++.++++ .-+.+-|.|.
T Consensus 245 ~~l---~~l~~~l~~~gv~pyyl~~~~p~~g~~~f~~~~~~~~~i~~~l~~~~~g~~~p~~v~~~~~ 308 (321)
T TIGR03822 245 ETL---AALMRAFVECRIKPYYLHHLDLAPGTAHFRVTIEEGQALVRALRGRISGLAQPTYVLDIPG 308 (321)
T ss_pred HHH---HHHHHHHHhcCCeeEEEEecCCCCCcccccCcHHHHHHHHHHHHHhCCCCcceeEEEeCCC
Confidence 455 5556777888987444332 12 232111111344455544444 5577777774
No 329
>PRK02227 hypothetical protein; Provisional
Probab=68.49 E-value=25 Score=33.36 Aligned_cols=153 Identities=16% Similarity=0.186 Sum_probs=95.5
Q ss_pred hHHHHHHHhhcccccEEEeeCcccccCC--hhHHHHHHHHHHhC--CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCC
Q 022296 41 NVLEDIFESMGQFVDGLKFSGGSHSLMP--KPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (299)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~l~p--~~~l~eKI~l~~~~--gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~ 116 (299)
......+..+..=+||+|.|.--..-.+ .+.++..+...+.+ +..+.+-.|.++--...+ .-.+-.+.+++.||+
T Consensus 68 ~~~~aa~~~a~~GvDyVKvGl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~-~~~~l~~~a~~aGf~ 146 (238)
T PRK02227 68 TISLAALGAAATGADYVKVGLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSV-SPLSLPAIAADAGFD 146 (238)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCC-ChHHHHHHHHHcCCC
Confidence 4667788888888999999952111111 12233334444444 445555566664322221 234678889999999
Q ss_pred EEEecCC-------cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCcc
Q 022296 117 TIELNVG-------SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEI 189 (299)
Q Consensus 117 ~IEISdG-------ti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (299)
.+=|... |--++.++..++++.++++|+. .|. . |+ +
T Consensus 147 g~MlDTa~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~----~gL----A--GS---------------------------L 189 (238)
T PRK02227 147 GAMLDTAIKDGKSLFDHMDEEELAEFVAEARSHGLM----SAL----A--GS---------------------------L 189 (238)
T ss_pred EEEEecccCCCcchHhhCCHHHHHHHHHHHHHcccH----hHh----c--cc---------------------------C
Confidence 9988643 2369999999999999997665 233 1 11 1
Q ss_pred chhhhhhhHHHHHHHHHccCcEEEEeccccc---cCCCcccHHHHHHHHhccC
Q 022296 190 EVGVGINKSRRAERCLEAGADMIMIDSDDVC---KHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 190 ~~~~~~~~i~~~~~dLeAGA~~VIiEargi~---d~~G~~r~d~i~~ii~~l~ 239 (299)
. .+.+..-..-+.|++=+=+ .+| |.++.++.+.|.++.+.+.
T Consensus 190 ~-------~~dip~L~~l~pD~lGfRg-avC~g~dR~~~id~~~V~~~~~~l~ 234 (238)
T PRK02227 190 K-------FEDIPALKRLGPDILGVRG-AVCGGGDRTGRIDPELVAELREALR 234 (238)
T ss_pred c-------hhhHHHHHhcCCCEEEech-hccCCCCcccccCHHHHHHHHHHhh
Confidence 1 2222444667788775533 255 4568999999999987664
No 330
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=68.49 E-value=80 Score=30.52 Aligned_cols=194 Identities=12% Similarity=0.149 Sum_probs=115.3
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceec----CCc--H---HH----HHH--HhCCc-----
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGD--W---AE----HLI--RNGPS----- 101 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~----~Gt--l---fE----~a~--~qg~~----- 101 (299)
.++++|..|=+- +++-|.+-+++-+.++.-|+-|.+.+.++. +|+ + ++ .+. .+.-+
T Consensus 5 ~~k~lL~~A~~~----~yAV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV 80 (286)
T PRK08610 5 SMKEMLIDAKEN----GYAVGQYNLNNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPV 80 (286)
T ss_pred cHHHHHHHHHHC----CceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCE
Confidence 566666665432 567788888888888888888888776543 221 1 12 111 11100
Q ss_pred -------hHHHHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 022296 102 -------AFKEYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 172 (299)
Q Consensus 102 -------~~~~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~ 172 (299)
.=-+.+..|-++||+.|=+..-.+++.+-- =.++++.++..|.-|--|+|.=- ..+|...
T Consensus 81 ~lHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vg------g~ed~~~----- 149 (286)
T PRK08610 81 AIHLDHGSSFEKCKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVG------GQEDDVV----- 149 (286)
T ss_pred EEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccC------CccCCCC-----
Confidence 013556778899999999976654443322 24678888999999999999831 1122100
Q ss_pred CCCCccchhcccCCCccchhhhhhhHHHHHHHHHc-cCcEEEEec---cccccCCCcccHHHHHHHHhccCCCceEEecC
Q 022296 173 RAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEA-GADMIMIDS---DDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 248 (299)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeA-GA~~VIiEa---rgi~d~~G~~r~d~i~~ii~~l~~eklifEAP 248 (299)
.. ...+| +|++ ++++++. |+|..-+== -|+|...-+++-+.+++|-+.+++-=++==+.
T Consensus 150 ~~--~~~yT--------~pee-------a~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgS 212 (286)
T PRK08610 150 AD--GIIYA--------DPKE-------CQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGT 212 (286)
T ss_pred Cc--ccccC--------CHHH-------HHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeCCC
Confidence 00 01111 1444 4777764 998775543 39999888999999999988776422222222
Q ss_pred -Cch-hHHHHHHHhCCCcccc
Q 022296 249 -NPR-TSEWFIRRYGPKVNLF 267 (299)
Q Consensus 249 -~k~-qQ~~fI~~fG~~VNLg 267 (299)
.+. |....|+.==..||.+
T Consensus 213 G~~~e~~~~ai~~GI~KiNi~ 233 (286)
T PRK08610 213 GIPTKDIQKAIPFGTAKINVN 233 (286)
T ss_pred CCCHHHHHHHHHCCCeEEEec
Confidence 333 3333444433567765
No 331
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=68.34 E-value=21 Score=37.07 Aligned_cols=151 Identities=11% Similarity=0.132 Sum_probs=94.0
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCc---hHHHHHHHHHHcCCCEE
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPS---AFKEYVEDCKQVGFDTI 118 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~---~~~~yl~~~k~lGF~~I 118 (299)
.+-+.|..+| ||.+=.||-.+.-...+.+++..+.-. -+..++. |.= ...++ ..+.-++.+.+.|.+.|
T Consensus 27 ~Ia~~L~~~G--Vd~IE~G~p~~s~~d~~~v~~i~~~~~-~~~~i~~--~~r---~~r~~~~~~~d~~~ea~~~~~~~~v 98 (526)
T TIGR00977 27 RIAERLDDLG--IHYIEGGWPGANPKDVQFFWQLKEMNF-KNAKIVA--FCS---TRRPHKKVEEDKMLQALIKAETPVV 98 (526)
T ss_pred HHHHHHHHcC--CCEEEEeCCCCChHHHHHHHHHHHhCC-CCcEEEE--Eee---ecCCCCCCchHHHHHHHhcCCCCEE
Confidence 4556677888 999999987666544444554443211 1233332 110 00111 34677888999999999
Q ss_pred EecCCcc--------cCChhHHH----HHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCC
Q 022296 119 ELNVGSL--------EIPEETLL----RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASN 186 (299)
Q Consensus 119 EISdGti--------~i~~~~r~----~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~ 186 (299)
-|...+- ..+.++=+ +.|+.+++.|+.|. |.-.... | .+
T Consensus 99 ~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~--~~~e~f~-------D--------~~------------ 149 (526)
T TIGR00977 99 TIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVI--YDAEHFF-------D--------GY------------ 149 (526)
T ss_pred EEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE--EEeeeee-------e--------cc------------
Confidence 9876553 33444433 34788899888763 4332100 1 00
Q ss_pred CccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 187 PEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 187 ~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
..+++.+ ++.++...++||+.|. |+|..|-..+..+.++++.+
T Consensus 150 -r~~~~~l---~~~~~~a~~aGad~i~-----i~DTvG~~~P~~v~~li~~l 192 (526)
T TIGR00977 150 -KANPEYA---LATLATAQQAGADWLV-----LCDTNGGTLPHEISEITTKV 192 (526)
T ss_pred -cCCHHHH---HHHHHHHHhCCCCeEE-----EecCCCCcCHHHHHHHHHHH
Confidence 0126777 8888999999999986 57888988888888777654
No 332
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=68.31 E-value=34 Score=33.22 Aligned_cols=65 Identities=17% Similarity=0.156 Sum_probs=39.8
Q ss_pred ChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcC
Q 022296 68 PKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAG 143 (299)
Q Consensus 68 p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G 143 (299)
+.+.+.+.++..+.. .|-+..|.. ....+.++.+-+.|.+.|+|+-..- +.+...++|+.+++.+
T Consensus 68 ~~~~~~~~i~~vk~~l~v~~~~~~~---------~~~~~~~~~l~eagv~~I~vd~~~G--~~~~~~~~i~~ik~~~ 133 (325)
T cd00381 68 SIEEQAEEVRKVKGRLLVGAAVGTR---------EDDKERAEALVEAGVDVIVIDSAHG--HSVYVIEMIKFIKKKY 133 (325)
T ss_pred CHHHHHHHHHHhccCceEEEecCCC---------hhHHHHHHHHHhcCCCEEEEECCCC--CcHHHHHHHHHHHHHC
Confidence 335566666666532 222333321 1456778888889999999865332 1256678899888864
No 333
>PRK07360 FO synthase subunit 2; Reviewed
Probab=68.23 E-value=65 Score=31.68 Aligned_cols=109 Identities=15% Similarity=0.200 Sum_probs=71.3
Q ss_pred chhHHHHHHHhhcc-cccEEEeeCcccccCC-hhHHHHHHHHHHhC--CceecCCcHHHHHHHh---CCchHHHHHHHHH
Q 022296 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMP-KPFIEEVVKRAHQH--DVYVSTGDWAEHLIRN---GPSAFKEYVEDCK 111 (299)
Q Consensus 39 g~~~l~DlLe~ag~-yID~lKfg~GTs~l~p-~~~l~eKI~l~~~~--gV~v~~GtlfE~a~~q---g~~~~~~yl~~~k 111 (299)
.+.++.+..+.+-+ -+.-+=+-.|...-.+ -+.+.+.++..|+. +|.++.=+..|+.+.. | ...++.++.+|
T Consensus 92 s~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G-~~~~e~l~~Lk 170 (371)
T PRK07360 92 TIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDG-LSYEEVLKALK 170 (371)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcC-CCHHHHHHHHH
Confidence 34444444443333 3666677777555444 45677888888874 4545433566665432 3 34688999999
Q ss_pred HcCCCEE-EecCCc----------c-cCChhHHHHHHHHHHHcCCcccc
Q 022296 112 QVGFDTI-ELNVGS----------L-EIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 112 ~lGF~~I-EISdGt----------i-~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
+.|.+.+ |-+.-+ - ..+.++|.+.++.+++.|+++-+
T Consensus 171 eAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~s 219 (371)
T PRK07360 171 DAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTS 219 (371)
T ss_pred HcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcee
Confidence 9999998 333211 1 35778999999999999999866
No 334
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=68.21 E-value=22 Score=35.69 Aligned_cols=119 Identities=15% Similarity=0.104 Sum_probs=77.8
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCc-eecCC--cHHHHHHH---hC-
Q 022296 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIR---NG- 99 (299)
Q Consensus 27 T~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV-~v~~G--tlfE~a~~---qg- 99 (299)
|..+.=|-+....+..++++++.+..+.++.+-.-=|.-.-|...-+++++.++++|+ .++.| ++-+..+. +.
T Consensus 105 ~i~~gGGtPs~l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~ 184 (453)
T PRK09249 105 QLHWGGGTPTFLSPEQLRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQ 184 (453)
T ss_pred EEEECCcccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCC
Confidence 3344445332225788999999887765432100002223454555799999999999 77777 56544441 11
Q ss_pred -CchHHHHHHHHHHcCCC--EEEecCCcccCChhHHHHHHHHHHHcCCc
Q 022296 100 -PSAFKEYVEDCKQVGFD--TIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (299)
Q Consensus 100 -~~~~~~yl~~~k~lGF~--~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (299)
.+.+.+-++.+++.||+ .+-+.-|.=.-+.++..+.++.+.+.|..
T Consensus 185 ~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~ 233 (453)
T PRK09249 185 PFEFTFALVEAARELGFTSINIDLIYGLPKQTPESFARTLEKVLELRPD 233 (453)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCHHHHHHHHHHHHhcCCC
Confidence 12456677888899997 44566677778888888999999998765
No 335
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=68.16 E-value=18 Score=33.54 Aligned_cols=74 Identities=23% Similarity=0.212 Sum_probs=48.3
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCcccccccccccCCCCc
Q 022296 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (299)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~--G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~ 177 (299)
|+.+..|-..++.+||..|=+. ++-...+ .++|+++++. +..+.-.+|++
T Consensus 134 ~e~~~ayA~aae~~g~~ivyLe-~SG~~~~---~e~I~~v~~~~~~~pl~vGGGIr------------------------ 185 (219)
T cd02812 134 PEDAAAYALAAEYLGMPIVYLE-YSGAYGP---PEVVRAVKKVLGDTPLIVGGGIR------------------------ 185 (219)
T ss_pred HHHHHHHHHHHHHcCCeEEEeC-CCCCcCC---HHHHHHHHHhcCCCCEEEeCCCC------------------------
Confidence 3457889999999999988777 5444333 3456666553 34444444441
Q ss_pred cchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecccccc
Q 022296 178 TDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCK 221 (299)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d 221 (299)
+ .++++..++||||.|++ +.-+++
T Consensus 186 ----------s---------~e~a~~l~~aGAD~VVV-Gsai~~ 209 (219)
T cd02812 186 ----------S---------GEQAKEMAEAGADTIVV-GNIVEE 209 (219)
T ss_pred ----------C---------HHHHHHHHHcCCCEEEE-CchhhC
Confidence 1 56668899999999999 333444
No 336
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=68.15 E-value=30 Score=33.40 Aligned_cols=87 Identities=18% Similarity=0.269 Sum_probs=63.2
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhc
Q 022296 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLF 182 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~ 182 (299)
++.-.+..|+-|-++|-+..| ++..+.|+++.++|.-|.-.+|.--.. + ..+|.|=.-
T Consensus 96 ~~nA~r~~ke~gA~aVKlEGG------~~~~~~i~~L~~~gIPV~gHiGLtPQ~--v-----~~~GGykvq--------- 153 (268)
T COG0413 96 LKNAARLMKEAGADAVKLEGG------EEMAETIKRLTERGIPVMGHIGLTPQS--V-----NWLGGYKVQ--------- 153 (268)
T ss_pred HHHHHHHHHHhCCCEEEEcCC------HHHHHHHHHHHHcCCceEEEecCChhh--h-----hccCCeeee---------
Confidence 444456678899999999999 778899999999999999999874221 1 111222111
Q ss_pred ccCCCccchhhhhhhHHHHHHHHHccCcEEEEec
Q 022296 183 LASNPEIEVGVGINKSRRAERCLEAGADMIMIDS 216 (299)
Q Consensus 183 ~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEa 216 (299)
+-.+-+.+++ ++.+++-=+|||..|.+|.
T Consensus 154 --Gr~~~~a~~l---~~dA~ale~AGaf~ivlE~ 182 (268)
T COG0413 154 --GRTEESAEKL---LEDAKALEEAGAFALVLEC 182 (268)
T ss_pred --cCCHHHHHHH---HHHHHHHHhcCceEEEEec
Confidence 0011236777 9999999999999999998
No 337
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=68.03 E-value=22 Score=34.49 Aligned_cols=65 Identities=12% Similarity=0.183 Sum_probs=45.9
Q ss_pred EEeeCcccccCChhHHHHHHHHHHhC-CceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc
Q 022296 57 LKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 124 (299)
Q Consensus 57 lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~---GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt 124 (299)
.|=|+|++.+-.++.+.+.++-.++. ++++.- .+|-+. .......++++.+.+.|.++|.|+..+
T Consensus 106 ~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~---~t~~~~~~~~~~l~~aG~d~i~vh~Rt 174 (333)
T PRK11815 106 QNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQ---DSYEFLCDFVDTVAEAGCDTFIVHARK 174 (333)
T ss_pred cCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCC---cCHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 36788999999999999999998874 554443 122210 000135678888999999999998554
No 338
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=67.80 E-value=1e+02 Score=28.44 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=62.1
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecC----Cc-----HHHHH
Q 022296 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST----GD-----WAEHL 95 (299)
Q Consensus 25 GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~----Gt-----lfE~a 95 (299)
+++...+=|. + ....++++++. | .|. +-.||+++.+++.+++..+.+-+--|.++. |. |.+++
T Consensus 74 ~~pv~~~GGi--~-s~~d~~~~~~~-G--a~~--vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~ 145 (254)
T TIGR00735 74 FIPLTVGGGI--K-SIEDVDKLLRA-G--ADK--VSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVY 145 (254)
T ss_pred CCCEEEECCC--C-CHHHHHHHHHc-C--CCE--EEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEE
Confidence 3445555555 2 56666777774 4 343 466899999999888866555211233322 21 11221
Q ss_pred HH----hCCchHHHHHHHHHHcCCCEEEecCCcccC--ChhHHHHHHHHHHHc
Q 022296 96 IR----NGPSAFKEYVEDCKQVGFDTIELNVGSLEI--PEETLLRYVRLVKSA 142 (299)
Q Consensus 96 ~~----qg~~~~~~yl~~~k~lGF~~IEISdGti~i--~~~~r~~lI~~~~~~ 142 (299)
.. ..+....++.+.+.+.|++.|.+++-.-+- +--+ .++++.+++.
T Consensus 146 i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~-~~~~~~i~~~ 197 (254)
T TIGR00735 146 IYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYD-LELTKAVSEA 197 (254)
T ss_pred EeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCC-HHHHHHHHHh
Confidence 11 112367899999999999999996522210 1111 3566666663
No 339
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=67.74 E-value=57 Score=34.21 Aligned_cols=112 Identities=18% Similarity=0.159 Sum_probs=66.6
Q ss_pred HHHHHHHcCCCEEEecCCcccC----ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 106 YVEDCKQVGFDTIELNVGSLEI----PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 106 yl~~~k~lGF~~IEISdGti~i----~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
..+.-.+-|.|.+=+=|=+-.- .++...++|+++.+.=|.+ +.+ .--|-..+|+. +.+
T Consensus 272 ~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip---~~v---GGGIr~~~d~~-~~~----------- 333 (538)
T PLN02617 272 LAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVP---LTV---GGGIRDFTDAN-GRY----------- 333 (538)
T ss_pred HHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCC---EEE---cCCcccccccc-ccc-----------
Confidence 3344446799988876655422 2333488999999853321 222 00010111100 000
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccc------cCCCcccHHHHHHHHhccCCCceEEecC
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVC------KHADSLRADIIAKVIGRLGLEKTMFEAT 248 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~------d~~G~~r~d~i~~ii~~l~~eklifEAP 248 (299)
.-.++++++-|++|||+|+|-+.-+. .+.-....++++++.+++|-.+|+.=-.
T Consensus 334 -------------~~~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD 393 (538)
T PLN02617 334 -------------YSSLEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSID 393 (538)
T ss_pred -------------cchHHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEe
Confidence 11267889999999999999885333 3344556889999998888766666444
No 340
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=67.68 E-value=15 Score=32.48 Aligned_cols=65 Identities=18% Similarity=0.257 Sum_probs=51.9
Q ss_pred HHHHHHhCCc-eec-CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcc
Q 022296 75 VVKRAHQHDV-YVS-TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (299)
Q Consensus 75 KI~l~~~~gV-~v~-~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v 146 (299)
..++++++|| .+. .|--.++|+..- ...+.++||+.+=++|++-+.+.+.....++.++..|.++
T Consensus 129 L~~~L~~~~i~~lii~G~~t~~CV~~T-------~~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~~~~G~~i 195 (196)
T cd01011 129 LAEYLRERGIDRVDVVGLATDYCVKAT-------ALDALKAGFEVRVLEDACRAVDPETIERAIEEMKEAGVVL 195 (196)
T ss_pred HHHHHHHCCCCEEEEEEecccHHHHHH-------HHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHHccCEE
Confidence 3455678999 444 477888888774 4556668999999999999999999999999999877653
No 341
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=67.65 E-value=20 Score=34.19 Aligned_cols=64 Identities=13% Similarity=0.158 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcc
Q 022296 71 FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (299)
Q Consensus 71 ~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v 146 (299)
.|++|+.- | .+..|+|.... + ....+.+...|||.|-|.-=--.++.++...+|+.++..|..+
T Consensus 8 ~lk~~L~~----G-~~~~G~~~~~~---s----p~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~ 71 (267)
T PRK10128 8 PFKEGLRK----G-EVQIGLWLSST---T----SYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQP 71 (267)
T ss_pred HHHHHHHc----C-CceEEEEecCC---C----cHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCe
Confidence 46666543 3 23456665321 1 3456667788999999999999999999999999999877653
No 342
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=67.62 E-value=70 Score=31.72 Aligned_cols=96 Identities=20% Similarity=0.393 Sum_probs=56.9
Q ss_pred chhHHHHHHHhhccc--ccEEEe--eCcccccCChhHHHHHHHHHHh----CCce--ecC-CcHHHHHHHhCCchHHHHH
Q 022296 39 SHNVLEDIFESMGQF--VDGLKF--SGGSHSLMPKPFIEEVVKRAHQ----HDVY--VST-GDWAEHLIRNGPSAFKEYV 107 (299)
Q Consensus 39 g~~~l~DlLe~ag~y--ID~lKf--g~GTs~l~p~~~l~eKI~l~~~----~gV~--v~~-GtlfE~a~~qg~~~~~~yl 107 (299)
....++.+++.+.+. +..+-| .+|=-.|.|...+++-++++++ .+|. +-| |+++- ++..
T Consensus 49 s~e~~~~~i~~~~~~~~~~~v~i~f~GGEPlL~~~~~~~~~~~~~~~~~~~~~i~~~i~TNG~ll~----------~e~~ 118 (412)
T PRK13745 49 SDELLEKFIKEYINSQTMPQVLFTWHGGETLMRPLSFYKKALELQKKYARGRQIDNCIQTNGTLLT----------DEWC 118 (412)
T ss_pred CHHHHHHHHHHHHHcCCCCeEEEEEEccccCCCcHHHHHHHHHHHHHHcCCCceEEEEeecCEeCC----------HHHH
Confidence 555666666654321 244444 4588888876667777777654 3443 335 66553 3455
Q ss_pred HHHHHcCCCEEEec-CCcccCChhH------------HHHHHHHHHHcCCc
Q 022296 108 EDCKQVGFDTIELN-VGSLEIPEET------------LLRYVRLVKSAGLK 145 (299)
Q Consensus 108 ~~~k~lGF~~IEIS-dGti~i~~~~------------r~~lI~~~~~~G~~ 145 (299)
+.+++.|| .|-|| ||.-++-+.- -.+-|+.++++|..
T Consensus 119 ~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~ 168 (412)
T PRK13745 119 EFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVE 168 (412)
T ss_pred HHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCC
Confidence 56677788 89999 7764322222 23466777887754
No 343
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=67.59 E-value=77 Score=30.56 Aligned_cols=41 Identities=34% Similarity=0.486 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC-------Ch-hHHHHHHHHHHHc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEI-------PE-ETLLRYVRLVKSA 142 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i-------~~-~~r~~lI~~~~~~ 142 (299)
.+.++.+.+++.|+|+|||+=++-.- .. +...++++.+++.
T Consensus 115 e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~ 163 (334)
T PRK07565 115 GWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSA 163 (334)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhc
Confidence 45677888888999999996443111 11 2345777777764
No 344
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=67.59 E-value=16 Score=39.17 Aligned_cols=62 Identities=23% Similarity=0.214 Sum_probs=45.9
Q ss_pred ChhHHHHHHHHHHhCCceec--CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 022296 68 PKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (299)
Q Consensus 68 p~~~l~eKI~l~~~~gV~v~--~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (299)
+++..++-|+.+|+.||.+. +|+--+.|- .-++++|++.+ .-...+++|.++|+..++.|-.
T Consensus 446 ~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~-----------aIA~elGId~v-----~A~~~PedK~~iV~~lQ~~G~~ 509 (679)
T PRK01122 446 VKPGIKERFAELRKMGIKTVMITGDNPLTAA-----------AIAAEAGVDDF-----LAEATPEDKLALIRQEQAEGRL 509 (679)
T ss_pred CchhHHHHHHHHHHCCCeEEEECCCCHHHHH-----------HHHHHcCCcEE-----EccCCHHHHHHHHHHHHHcCCe
Confidence 35678899999999998544 686433332 34677888643 5678999999999999998754
No 345
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=67.40 E-value=17 Score=39.01 Aligned_cols=63 Identities=19% Similarity=0.176 Sum_probs=47.3
Q ss_pred CChhHHHHHHHHHHhCCcee--cCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCC
Q 022296 67 MPKPFIEEVVKRAHQHDVYV--STGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 144 (299)
Q Consensus 67 ~p~~~l~eKI~l~~~~gV~v--~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~ 144 (299)
-+++..++-|+.+|+.||.+ .||+=-+.| ..-|+++|++.+ +-...+++|.++|+..++.|-
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA-----------~aIA~elGI~~v-----~A~~~PedK~~iV~~lQ~~G~ 504 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTA-----------ATIAKEAGVDRF-----VAECKPEDKINVIREEQAKGH 504 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHH-----------HHHHHHcCCceE-----EcCCCHHHHHHHHHHHHhCCC
Confidence 45677899999999999954 368533333 234678888743 568899999999999999875
Q ss_pred c
Q 022296 145 K 145 (299)
Q Consensus 145 ~ 145 (299)
.
T Consensus 505 ~ 505 (673)
T PRK14010 505 I 505 (673)
T ss_pred E
Confidence 4
No 346
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=67.32 E-value=26 Score=32.10 Aligned_cols=107 Identities=12% Similarity=0.067 Sum_probs=64.6
Q ss_pred HHHHHHHhhc-ccccEEEeeCcccc------cCChhHHHHHHHHHHhCCceecCC--cH---H------HHHHHhCCchH
Q 022296 42 VLEDIFESMG-QFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQHDVYVSTG--DW---A------EHLIRNGPSAF 103 (299)
Q Consensus 42 ~l~DlLe~ag-~yID~lKfg~GTs~------l~p~~~l~eKI~l~~~~gV~v~~G--tl---f------E~a~~qg~~~~ 103 (299)
+.=+.+..+| ++|++. .+... =++++.+++.-++++++|+.++.. +. + +..-.+.-+.+
T Consensus 25 e~~~~~~~~G~~~iEl~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 101 (283)
T PRK13209 25 EKLAIAKTAGFDFVEMS---VDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIM 101 (283)
T ss_pred HHHHHHHHcCCCeEEEe---cCccccchhccCCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHHH
Confidence 5555556666 677663 22211 124556888999999999987531 11 1 11111111258
Q ss_pred HHHHHHHHHcCCCEEEecCCccc--CC--------hhHHHHHHHHHHHcCCcccceee
Q 022296 104 KEYVEDCKQVGFDTIELNVGSLE--IP--------EETLLRYVRLVKSAGLKAKPKFA 151 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~--i~--------~~~r~~lI~~~~~~G~~v~~E~g 151 (299)
++.++.|+++|.++|=+..+... .+ .+...++.+.+++.|.++.-|..
T Consensus 102 ~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~ 159 (283)
T PRK13209 102 RKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEIM 159 (283)
T ss_pred HHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeec
Confidence 89999999999999987644321 12 12235677888888887666654
No 347
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=67.20 E-value=22 Score=32.25 Aligned_cols=93 Identities=14% Similarity=0.171 Sum_probs=62.6
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (299)
......++++..++|+|++|+|+.... . ...+-++.+++.+.++..- -+..+ |+-+..|.+.+.+.|+|+
T Consensus 9 ~~~~a~~i~~~~~~~v~~iKvg~~l~~--~--~g~~~i~~l~~~~~~i~~DlK~~DI-----g~tv~~~~~~~~~~gad~ 79 (216)
T cd04725 9 DEEFALALIDALGPYVCAVKVGLELFE--A--AGPEIVKELRELGFLVFLDLKLGDI-----PNTVAAAAEALLGLGADA 79 (216)
T ss_pred CHHHHHHHHHhcCCcccEEEECHHHHH--h--cCHHHHHHHHHCCCcEEEEeecCch-----HHHHHHHHHHHHhcCCCE
Confidence 456788999999999999999975433 2 3556777777777555542 13222 124455666667779999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcC
Q 022296 118 IELNVGSLEIPEETLLRYVRLVKSAG 143 (299)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G 143 (299)
+-|+- -...+....+++.+++.+
T Consensus 80 ~Tvh~---~~G~~~l~~~~~~~~~~~ 102 (216)
T cd04725 80 VTVHP---YGGSDMLKAALEAAEEKG 102 (216)
T ss_pred EEECC---cCCHHHHHHHHHHHhccC
Confidence 99884 455677777777776543
No 348
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=67.05 E-value=12 Score=34.29 Aligned_cols=94 Identities=14% Similarity=0.140 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcc
Q 022296 69 KPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (299)
Q Consensus 69 ~~~l~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v 146 (299)
+..-.+.++.|+++||.+.|| |.-|+.-. .++|++.|-+==...-= =..+|+.++. +
T Consensus 87 P~~~~~v~~~~~~~~i~~iPG~~TptEi~~A-------------~~~Ga~~vKlFPA~~~G----G~~yikal~~----p 145 (204)
T TIGR01182 87 PGLTPELAKHAQDHGIPIIPGVATPSEIMLA-------------LELGITALKLFPAEVSG----GVKMLKALAG----P 145 (204)
T ss_pred CCCCHHHHHHHHHcCCcEECCCCCHHHHHHH-------------HHCCCCEEEECCchhcC----CHHHHHHHhc----c
Confidence 345668889999999999998 78887754 46899999875432110 0357777666 4
Q ss_pred cceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccC
Q 022296 147 KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKH 222 (299)
Q Consensus 147 ~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~ 222 (299)
+|.+-.. -+| + ++ .+.+...|+|||..|-+=+. |++.
T Consensus 146 lp~i~~~----ptG--G-------------------------V~-------~~N~~~~l~aGa~~vg~Gs~-L~~~ 182 (204)
T TIGR01182 146 FPQVRFC----PTG--G-------------------------IN-------LANVRDYLAAPNVACGGGSW-LVPK 182 (204)
T ss_pred CCCCcEE----ecC--C-------------------------CC-------HHHHHHHHhCCCEEEEEChh-hcCc
Confidence 5543332 111 1 11 34559999999999887543 6653
No 349
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=66.80 E-value=26 Score=29.64 Aligned_cols=103 Identities=22% Similarity=0.263 Sum_probs=58.4
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc--C--CcccceeeeecCCCCCCCcccccccccccCCC
Q 022296 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA--G--LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (299)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~--G--~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~ 175 (299)
.+.+.+.++++.+.|++.|++.- ++++.+++. | ..+. +|+-.+.+
T Consensus 12 ~~~~~~~~~~~~~~gv~gi~~~g-----------~~i~~~~~~~~~~~~~v~--~~v~~~~~------------------ 60 (201)
T cd00945 12 LEDIAKLCDEAIEYGFAAVCVNP-----------GYVRLAADALAGSDVPVI--VVVGFPTG------------------ 60 (201)
T ss_pred HHHHHHHHHHHHHhCCcEEEECH-----------HHHHHHHHHhCCCCCeEE--EEecCCCC------------------
Confidence 34688889999999999999985 556655542 1 1111 22210000
Q ss_pred CccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCC--cccHHHHHHHHhcc--CCCceEEecC
Q 022296 176 RSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHAD--SLRADIIAKVIGRL--GLEKTMFEAT 248 (299)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G--~~r~d~i~~ii~~l--~~eklifEAP 248 (299)
....++. ++.++...++||+.|++-.---+..++ +.-.+.+.++++.. ++-=++.--|
T Consensus 61 ------------~~~~~~~---~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p 122 (201)
T cd00945 61 ------------LTTTEVK---VAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILET 122 (201)
T ss_pred ------------CCcHHHH---HHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEEC
Confidence 0113455 889999999999999997642222221 11133444565553 4444444444
No 350
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=66.79 E-value=35 Score=34.13 Aligned_cols=116 Identities=13% Similarity=0.113 Sum_probs=77.4
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEEeeC---c-ccccCChhHHHHHHHHHHhCCc-eecCC--cHHHHHH---
Q 022296 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSG---G-SHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLI--- 96 (299)
Q Consensus 27 T~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~---G-Ts~l~p~~~l~eKI~l~~~~gV-~v~~G--tlfE~a~--- 96 (299)
|..++=|-+....+..++++++....+.. +.+ . |.-..|...-.++++.++++|+ .++.| ++-+..+
T Consensus 94 ~i~~GGGTPs~l~~~~l~~Ll~~i~~~~~---~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l 170 (430)
T PRK08208 94 SFAVGGGTPTLLNAAELEKLFDSVERVLG---VDLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHAL 170 (430)
T ss_pred EEEEcCCccccCCHHHHHHHHHHHHHhCC---CCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHh
Confidence 44455554322267889999998876654 222 1 2223455556899999999999 78778 6644333
Q ss_pred HhCC--chHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHcCCc
Q 022296 97 RNGP--SAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (299)
Q Consensus 97 ~qg~--~~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~G~~ 145 (299)
-++. +.+.+-++.|++.||+.| -+--|.=.-+.++..+-++.+.+.|..
T Consensus 171 ~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~ 223 (430)
T PRK08208 171 HRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQALVYRPE 223 (430)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhCCCC
Confidence 2221 246667788899999875 556666677777888889998887765
No 351
>PLN02826 dihydroorotate dehydrogenase
Probab=66.71 E-value=48 Score=33.52 Aligned_cols=85 Identities=11% Similarity=0.142 Sum_probs=56.0
Q ss_pred hhHHHHHHHhhcccccEEEeeCcc------cccCChhHHHHHHHHHHh----------CCceecC-CcHHHHHHHhCCch
Q 022296 40 HNVLEDIFESMGQFVDGLKFSGGS------HSLMPKPFIEEVVKRAHQ----------HDVYVST-GDWAEHLIRNGPSA 102 (299)
Q Consensus 40 ~~~l~DlLe~ag~yID~lKfg~GT------s~l~p~~~l~eKI~l~~~----------~gV~v~~-GtlfE~a~~qg~~~ 102 (299)
...+...++.+++|.|++=+-.-| ..+..++.+.+.++..++ ..+++.. .+.- +.. +.
T Consensus 203 ~~Dy~~~~~~~~~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPd---l~~--~d 277 (409)
T PLN02826 203 AADYVQGVRALSQYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPD---LSK--ED 277 (409)
T ss_pred HHHHHHHHHHHhhhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCC---CCH--HH
Confidence 456666777888999999876543 335556667777766542 2344443 2210 001 15
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCCh
Q 022296 103 FKEYVEDCKQVGFDTIELNVGSLEIPE 129 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~ 129 (299)
+++..+.|.+.|.|.|=++|-++..+.
T Consensus 278 i~~ia~~a~~~G~dGIi~~NTt~~r~~ 304 (409)
T PLN02826 278 LEDIAAVALALGIDGLIISNTTISRPD 304 (409)
T ss_pred HHHHHHHHHHcCCCEEEEEcccCcCcc
Confidence 778888999999999999998886544
No 352
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=66.00 E-value=29 Score=34.42 Aligned_cols=119 Identities=18% Similarity=0.097 Sum_probs=78.3
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCc-eecCC--cHHHHHHHh-C---
Q 022296 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G--- 99 (299)
Q Consensus 27 T~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV-~v~~G--tlfE~a~~q-g--- 99 (299)
|.-++-|-+....+..++.+++..-.+++..+-.-=|.-.-|...=.++++.++++|| .++.| ++-+..+.. |
T Consensus 69 ~iy~GGGTps~l~~~~l~~ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~ 148 (400)
T PRK07379 69 TVFFGGGTPSLLSVEQLERILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSH 148 (400)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCC
Confidence 4445444333227889999999998886543221122234566666799999999999 88888 676665532 1
Q ss_pred -CchHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHcCCc
Q 022296 100 -PSAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (299)
Q Consensus 100 -~~~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~G~~ 145 (299)
++.+.+-++.+++.||+.| -+--|.=.-+.+++.+-++.+.+.+..
T Consensus 149 ~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~ 197 (400)
T PRK07379 149 RVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASLEAAIALNPT 197 (400)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHcCCCC
Confidence 2346667778899999854 444555455666777778888876654
No 353
>PRK08323 phenylhydantoinase; Validated
Probab=65.98 E-value=82 Score=31.07 Aligned_cols=97 Identities=10% Similarity=0.102 Sum_probs=63.8
Q ss_pred ccccEEEeeCc--ccccCChhHHHHHHHHHHhCCceecC--Cc--HHHHH----HHhCC----------------chHHH
Q 022296 52 QFVDGLKFSGG--SHSLMPKPFIEEVVKRAHQHDVYVST--GD--WAEHL----IRNGP----------------SAFKE 105 (299)
Q Consensus 52 ~yID~lKfg~G--Ts~l~p~~~l~eKI~l~~~~gV~v~~--Gt--lfE~a----~~qg~----------------~~~~~ 105 (299)
..++.+|+..+ .....+.+.|++.++.++++|+.+.. -+ ..+.+ ...|. ..+++
T Consensus 140 ~g~~~ik~~~~~~~~~~~s~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~ 219 (459)
T PRK08323 140 EGITSFKLFMAYKGALMLDDDELLRALQRAAELGALPMVHAENGDAIAYLQAKLLAEGKTGPEYHALSRPPEVEGEATNR 219 (459)
T ss_pred cCCCEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCChhhhhccCCHHHHHHHHHH
Confidence 44577887643 33456677899999999999987654 23 22211 11121 13445
Q ss_pred HHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeee
Q 022296 106 YVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (299)
Q Consensus 106 yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK 153 (299)
-++.++.+|.... | .-++..+-.++|+.+++.|..|..|+...
T Consensus 220 ~~~~a~~~~~~~~-i----~H~s~~~~~~~i~~ak~~g~~vt~e~~p~ 262 (459)
T PRK08323 220 AIMLAELAGAPLY-I----VHVSCKEALEAIRRARARGQRVFGETCPQ 262 (459)
T ss_pred HHHHHHHhCCCEE-E----EeCCCHHHHHHHHHHHHCCCeEEEEcCcc
Confidence 5778888886654 2 55666777899999999998877666553
No 354
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=65.89 E-value=11 Score=37.70 Aligned_cols=157 Identities=18% Similarity=0.106 Sum_probs=98.1
Q ss_pred CCCCCCCCCceeEecCCCCCCcchhHHHHHHHh----hcccccEEEeeCcccccCChhHHHHHHHHHHhCCc-eecC-Cc
Q 022296 17 RAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFES----MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVST-GD 90 (299)
Q Consensus 17 R~~KPR~~GlT~V~DkGl~~~~g~~~l~DlLe~----ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV-~v~~-Gt 90 (299)
|..|....++|.|.+-.+. +..+... ||=|.+- +-...++++++.++++++-+.+.|+ .+.. ||
T Consensus 46 r~~~~~~~~vtyv~n~~in-------~TN~C~~~C~fCaF~~~~---~~~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG 115 (370)
T COG1060 46 RRRKRVGDGVTYVVNRNIN-------YTNICVNDCTFCAFYRKP---GDPKAYTLSPEEILEEVREAVKRGITEVLIVGG 115 (370)
T ss_pred HHhhccCCcEEEEEeecCC-------cchhhcCCCCccccccCC---CCccccccCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 3466777899999998883 3344443 3334443 3335577888889999999999999 4443 43
Q ss_pred --------HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCc
Q 022296 91 --------WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSD 162 (299)
Q Consensus 91 --------lfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~ 162 (299)
|+|-++.. --++|. .+.-.+|+..||.--+.......+ +.+++++++|+-..|+.|-- +-..
T Consensus 116 ~~p~~~~~y~~~~~~~---ik~~~p-~~~i~a~s~~ei~~~~~~~~~s~~-E~l~~Lk~aGldsmpg~~ae-----il~e 185 (370)
T COG1060 116 EHPELSLEYYEELFRT---IKEEFP-DLHIHALSAGEILFLAREGGLSYE-EVLKRLKEAGLDSMPGGGAE-----ILSE 185 (370)
T ss_pred cCCCcchHHHHHHHHH---HHHhCc-chhhcccCHHHhHHHHhccCCCHH-HHHHHHHHcCCCcCcCccee-----echH
Confidence 23333221 111233 344488998888766655444443 67788889999999988763 2211
Q ss_pred ccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEE
Q 022296 163 RDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMI 212 (299)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~V 212 (299)
.= ...+.|. ..+.+++ ++..+..-++|-..+
T Consensus 186 ~v---r~~~~p~-------------K~~~~~w---le~~~~Ah~lGI~~t 216 (370)
T COG1060 186 EV---RKIHCPP-------------KKSPEEW---LEIHERAHRLGIPTT 216 (370)
T ss_pred HH---HHhhCCC-------------CCCHHHH---HHHHHHHHHcCCCcc
Confidence 10 1122232 2347777 999999999997654
No 355
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=65.85 E-value=30 Score=31.87 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=16.8
Q ss_pred HHHHHHHHHccCcEEEEecccccc
Q 022296 198 SRRAERCLEAGADMIMIDSDDVCK 221 (299)
Q Consensus 198 i~~~~~dLeAGA~~VIiEargi~d 221 (299)
-++++..+++|||-|++=+ .|++
T Consensus 197 ~e~i~~~~~~gaD~vvvGS-ai~~ 219 (244)
T PRK13125 197 PEDARDALSAGADGVVVGT-AFIE 219 (244)
T ss_pred HHHHHHHHHcCCCEEEECH-HHHH
Confidence 3556888999999998854 4543
No 356
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=65.67 E-value=65 Score=28.77 Aligned_cols=137 Identities=12% Similarity=0.121 Sum_probs=0.0
Q ss_pred CCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCC---------cHH
Q 022296 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---------DWA 92 (299)
Q Consensus 22 R~~GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G---------tlf 92 (299)
+..++....+=|.. ....++.+++...+ +.-.||+.+..++.+++..+.+.+. +.++-- +|-
T Consensus 71 ~~~~~pv~~~GGI~---~~ed~~~~~~~Ga~-----~vilg~~~l~~~~~l~ei~~~~~~~-i~vsid~k~~~v~~~g~~ 141 (233)
T PRK00748 71 KAVDIPVQVGGGIR---SLETVEALLDAGVS-----RVIIGTAAVKNPELVKEACKKFPGK-IVVGLDARDGKVATDGWL 141 (233)
T ss_pred HHCCCCEEEcCCcC---CHHHHHHHHHcCCC-----EEEECchHHhCHHHHHHHHHHhCCC-ceeeeeccCCEEEEccCe
Q ss_pred HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHH-HHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccc
Q 022296 93 EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETL-LRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAY 170 (299)
Q Consensus 93 E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r-~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~~~ 170 (299)
+.. .. ...++.+.+.++|++.|=+-+-+-+-...-- .++|+.+++. ...++..-|+ .+
T Consensus 142 ~~~--~~--~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~GGi---~~------------- 201 (233)
T PRK00748 142 ETS--GV--TAEDLAKRFEDAGVKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGV---SS------------- 201 (233)
T ss_pred ecC--CC--CHHHHHHHHHhcCCCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeCCC---CC-------------
Q ss_pred ccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHcc-CcEEEE
Q 022296 171 VARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAG-ADMIMI 214 (299)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAG-A~~VIi 214 (299)
.+.++..++.| |+-||+
T Consensus 202 ---------------------------~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 202 ---------------------------LDDIKALKGLGAVEGVIV 219 (233)
T ss_pred ---------------------------HHHHHHHHHcCCccEEEE
No 357
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=65.65 E-value=31 Score=31.40 Aligned_cols=94 Identities=13% Similarity=0.112 Sum_probs=57.3
Q ss_pred HHhhcccccEEEeeCccc-ccCC-------hhHHHHHHHHHHhCCceecC--CcHHH-HHH--HhCCch----HHHHHHH
Q 022296 47 FESMGQFVDGLKFSGGSH-SLMP-------KPFIEEVVKRAHQHDVYVST--GDWAE-HLI--RNGPSA----FKEYVED 109 (299)
Q Consensus 47 Le~ag~yID~lKfg~GTs-~l~p-------~~~l~eKI~l~~~~gV~v~~--GtlfE-~a~--~qg~~~----~~~yl~~ 109 (299)
|....+.+|++=+ |+.. .+.. .+..++.|..+|+.|++|.. |++.. ..+ ...+.. ++.-++.
T Consensus 21 l~~~pds~D~v~l-f~~~~~~~~~~~~~~~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~~~~~~~~~~~~fa~~l~~~ 99 (255)
T cd06542 21 LLNLPDSVDMVSL-FAANINLDAATAVQFLLTNKETYIRPLQAKGTKVLLSILGNHLGAGFANNLSDAAAKAYAKAIVDT 99 (255)
T ss_pred cccCCCcceEEEE-cccccCcccccchhhhhHHHHHHHHHHhhCCCEEEEEECCCCCCCCccccCCHHHHHHHHHHHHHH
Confidence 3445688999977 5543 2221 36788999999999998863 54321 111 111112 4556677
Q ss_pred HHHcCCCEEEecCCccc--------CChhHHHHHHHHHHH
Q 022296 110 CKQVGFDTIELNVGSLE--------IPEETLLRYVRLVKS 141 (299)
Q Consensus 110 ~k~lGF~~IEISdGti~--------i~~~~r~~lI~~~~~ 141 (299)
|++.|||.|-|.--... -..+....+|+.+++
T Consensus 100 v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~ 139 (255)
T cd06542 100 VDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRK 139 (255)
T ss_pred HHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHH
Confidence 88999999988543221 133455667776666
No 358
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=65.52 E-value=1.3e+02 Score=28.92 Aligned_cols=138 Identities=12% Similarity=0.148 Sum_probs=81.5
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 104 KEYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
-+.+..|-+.||+.|=+..-.+++.+-- =.++++.++..|.-|--|+|.=-+ .|-+...+ .. ...+|
T Consensus 87 ~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg-~e~~~~~~--------~~--~~~~T 155 (284)
T PRK12737 87 LDDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGG-QEDDLVVD--------EK--DAMYT 155 (284)
T ss_pred HHHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccC-ccCCcccc--------cc--cccCC
Confidence 3677889999999999976654433322 236778888899999999998321 11010000 00 00111
Q ss_pred cccCCCccchhhhhhhHHHHHHHHH-ccCcEEEEec---cccccCCCcccHHHHHHHHhccCCCceEEecC-CchhHHHH
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLE-AGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGLEKTMFEAT-NPRTSEWF 256 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLe-AGA~~VIiEa---rgi~d~~G~~r~d~i~~ii~~l~~eklifEAP-~k~qQ~~f 256 (299)
+|++. +++.+ -|+|..-|== -|+|...-+++-+.+++|-+.++.-=++==+. .|..|.-=
T Consensus 156 --------~peeA-------~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~~k 220 (284)
T PRK12737 156 --------NPDAA-------AEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPLVLHGASGVPDEDVKK 220 (284)
T ss_pred --------CHHHH-------HHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHH
Confidence 24555 55654 6888776543 39999878899999999988765322332222 23333322
Q ss_pred HHHhC-CCcccc
Q 022296 257 IRRYG-PKVNLF 267 (299)
Q Consensus 257 I~~fG-~~VNLg 267 (299)
.-++| ..||++
T Consensus 221 ai~~Gi~KiNi~ 232 (284)
T PRK12737 221 AISLGICKVNVA 232 (284)
T ss_pred HHHCCCeEEEeC
Confidence 23344 456765
No 359
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=65.35 E-value=34 Score=30.16 Aligned_cols=22 Identities=23% Similarity=0.022 Sum_probs=15.8
Q ss_pred HHHHHHHHHccCcEEEEeccccc
Q 022296 198 SRRAERCLEAGADMIMIDSDDVC 220 (299)
Q Consensus 198 i~~~~~dLeAGA~~VIiEargi~ 220 (299)
.+.+...+++||+.|-+=+ .+|
T Consensus 154 ~~n~~~~~~~G~~~v~v~s-~i~ 175 (190)
T cd00452 154 LDNAAEWLAAGVVAVGGGS-LLP 175 (190)
T ss_pred HHHHHHHHHCCCEEEEEch-hcc
Confidence 4555999999999887633 344
No 360
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=64.87 E-value=75 Score=29.18 Aligned_cols=109 Identities=14% Similarity=0.118 Sum_probs=63.5
Q ss_pred HHHHHHHhhccc-ccEEEeeCcccc------cCChhHHHHHHHHHHhCCceecC---Cc-----HH---HHHHHhCCchH
Q 022296 42 VLEDIFESMGQF-VDGLKFSGGSHS------LMPKPFIEEVVKRAHQHDVYVST---GD-----WA---EHLIRNGPSAF 103 (299)
Q Consensus 42 ~l~DlLe~ag~y-ID~lKfg~GTs~------l~p~~~l~eKI~l~~~~gV~v~~---Gt-----lf---E~a~~qg~~~~ 103 (299)
.+++.|+.+.++ .|.+=++.+... -.+...+++--+.+.++|+.++. +. |. +....+.-+.+
T Consensus 17 ~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~ 96 (279)
T TIGR00542 17 CWLERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIM 96 (279)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHHHHHHHHHHH
Confidence 444555444432 444444444321 12355678888899999998763 21 11 11111111258
Q ss_pred HHHHHHHHHcCCCEEEecCCccc---CCh-------hHHHHHHHHHHHcCCccccee
Q 022296 104 KEYVEDCKQVGFDTIELNVGSLE---IPE-------ETLLRYVRLVKSAGLKAKPKF 150 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~---i~~-------~~r~~lI~~~~~~G~~v~~E~ 150 (299)
++.++.|+.+|.+.|=+..+... -+. +...++.+.+++.|.++.=|.
T Consensus 97 ~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 97 EKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 88999999999999988654321 122 233456677888888866663
No 361
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=64.81 E-value=21 Score=31.03 Aligned_cols=77 Identities=18% Similarity=0.204 Sum_probs=48.9
Q ss_pred CCCCceeEecC-CCCCCcchhHHHHHHHhhcccccEEEeeCcccccC-----ChhHHHHHHHHHHhCCceecC-C--cHH
Q 022296 22 RRFGVTEMRSP-HYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLM-----PKPFIEEVVKRAHQHDVYVST-G--DWA 92 (299)
Q Consensus 22 R~~GlT~V~Dk-Gl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~-----p~~~l~eKI~l~~~~gV~v~~-G--tlf 92 (299)
|..|....+|- |. |...++ .|... -+|++|+...-..-. ....++..++++|++|+.+.- | +.
T Consensus 143 ~~~G~~ialddfg~----~~~~~~-~l~~l--~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe~~- 214 (241)
T smart00052 143 RELGVRIALDDFGT----GYSSLS-YLKRL--PVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEGVETP- 214 (241)
T ss_pred HHCCCEEEEeCCCC----cHHHHH-HHHhC--CCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEecCCCH-
Confidence 45677777764 33 333433 33322 399999986533222 335788999999999997654 5 32
Q ss_pred HHHHHhCCchHHHHHHHHHHcCCCEE
Q 022296 93 EHLIRNGPSAFKEYVEDCKQVGFDTI 118 (299)
Q Consensus 93 E~a~~qg~~~~~~yl~~~k~lGF~~I 118 (299)
+-++.|+++|++.+
T Consensus 215 ------------~~~~~l~~~Gi~~~ 228 (241)
T smart00052 215 ------------EQLDLLRSLGCDYG 228 (241)
T ss_pred ------------HHHHHHHHcCCCEE
Confidence 34556778888876
No 362
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=64.72 E-value=18 Score=33.09 Aligned_cols=93 Identities=9% Similarity=-0.051 Sum_probs=54.3
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHH-HHHHcCCCE
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVE-DCKQVGFDT 117 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~-~~k~lGF~~ 117 (299)
......++++..++|+|++|+|+--..-+..+.+++.-+++. |.++..- .-+. + +..|+. .+.+.|.|.
T Consensus 14 ~~~~a~~l~~~l~~~v~~~kvG~~l~~~~G~~~i~~lk~~~~--~~~v~~D----LK~~-D---i~~~v~~~~~~~Gad~ 83 (216)
T PRK13306 14 DLESAIEDAKKVAEEVDIIEVGTILLLAEGMKAVRVLRALYP--DKIIVAD----TKIA-D---AGKILAKMAFEAGADW 83 (216)
T ss_pred CHHHHHHHHHHccccCCEEEEChHHHHHhCHHHHHHHHHHCC--CCEEEEE----Eeec-C---CcHHHHHHHHHCCCCE
Confidence 455778899999999999999987777666555655544321 2222211 1111 1 112222 255677777
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcCC
Q 022296 118 IELNVGSLEIPEETLLRYVRLVKSAGL 144 (299)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G~ 144 (299)
+-|.--+ +.++-.+.++.+++.|.
T Consensus 84 vTvH~~a---~~~~i~~~~~~~~~~g~ 107 (216)
T PRK13306 84 VTVICAA---HIPTIKAALKVAKEFNG 107 (216)
T ss_pred EEEeCCC---CHHHHHHHHHHHHHcCC
Confidence 7776422 55555666666666553
No 363
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=64.70 E-value=8.1 Score=36.67 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc--cCChhHHHH-HHHHHHHcCCcccc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSL--EIPEETLLR-YVRLVKSAGLKAKP 148 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti--~i~~~~r~~-lI~~~~~~G~~v~~ 148 (299)
.+++|+..||++||+.|||-|..- +|....-.. +-..+.+.|+...+
T Consensus 18 ~v~affa~ak~lg~s~VeiRndl~~~~I~dg~p~a~vka~Aek~Gl~IvS 67 (272)
T COG4130 18 SVEAFFALAKRLGLSKVEIRNDLPSNAIADGTPAAEVKALAEKAGLTIVS 67 (272)
T ss_pred CHHHHHHHHHHcCcceeEEecCCCcccccCCCCHHHHHHHHHHcCcEEEE
Confidence 699999999999999999977543 443333322 33445566776443
No 364
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=64.70 E-value=38 Score=31.71 Aligned_cols=138 Identities=13% Similarity=0.114 Sum_probs=81.7
Q ss_pred HHHcCCCEEEecCCc----------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccc
Q 022296 110 CKQVGFDTIELNVGS----------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTD 179 (299)
Q Consensus 110 ~k~lGF~~IEISdGt----------i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~ 179 (299)
+.+.||++|=+|+.. ..++.++.+..++.+.+. ..-.| +-+ .-+.|...
T Consensus 28 ~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~-~~~~p-via---D~~~G~g~---------------- 86 (240)
T cd06556 28 FADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRG-APLAL-IVA---DLPFGAYG---------------- 86 (240)
T ss_pred HHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhh-CCCCC-EEE---eCCCCCCc----------------
Confidence 344588888888643 367888888888877762 11111 111 11222211
Q ss_pred hhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc---------------------ccc----------cCCCccc-
Q 022296 180 KLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD---------------------DVC----------KHADSLR- 227 (299)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar---------------------gi~----------d~~G~~r- 227 (299)
+++.. ++.+++.++|||+-|-||.- |.+ +..|.-.
T Consensus 87 ----------~~~~~---~~~~~~l~~aGa~gv~iED~~~~~~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~~~~~ 153 (240)
T cd06556 87 ----------APTAA---FELAKTFMRAGAAGVKIEGGEWHIETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRGDE 153 (240)
T ss_pred ----------CHHHH---HHHHHHHHHcCCcEEEEcCcHHHHHHHHHHHHcCCeEEEEeCCchhhhhccCCceeeccCHH
Confidence 13556 88899999999999999982 221 1112211
Q ss_pred --HHHHHH--HHhccCCCceEEecCCchhHHHHHHHhCCCcccc-cC---CCCchhhhhhhc
Q 022296 228 --ADIIAK--VIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VD---HSQVMDLECLRG 281 (299)
Q Consensus 228 --~d~i~~--ii~~l~~eklifEAP~k~qQ~~fI~~fG~~VNLg-I~---~~eVi~LE~LR~ 281 (299)
++.++. .....|.+-|..|++..++-..+-+...-=||.. -+ ..||+-+.-+.+
T Consensus 154 ~~~~ai~Ra~ay~~AGAd~i~~e~~~~e~~~~i~~~~~~P~~~~gag~~~dgq~lv~~d~lg 215 (240)
T cd06556 154 AGEQLIADALAYAPAGADLIVMECVPVELAKQITEALAIPLAGIGAGSGTDGQFLVLADAFG 215 (240)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhCCCCEEEEecCcCCCceEEeHHhhhc
Confidence 123322 2256789999999997777777777765445542 22 246777766654
No 365
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=64.56 E-value=16 Score=31.85 Aligned_cols=80 Identities=19% Similarity=0.181 Sum_probs=0.0
Q ss_pred CCCCceeEecC-CCCCCcchhHHHHHHHhhcccccEEEeeCcccccCC-----hhHHHHHHHHHHhCCceecCCcHHHHH
Q 022296 22 RRFGVTEMRSP-HYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMP-----KPFIEEVVKRAHQHDVYVSTGDWAEHL 95 (299)
Q Consensus 22 R~~GlT~V~Dk-Gl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p-----~~~l~eKI~l~~~~gV~v~~GtlfE~a 95 (299)
|..|....+|- |. +...++-+.+.. +|++|+...-..-+. ...++..+.+++.+|+.+.-.+-
T Consensus 142 ~~~G~~l~ld~~g~----~~~~~~~l~~~~---~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gV---- 210 (240)
T cd01948 142 RALGVRIALDDFGT----GYSSLSYLKRLP---VDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGV---- 210 (240)
T ss_pred HHCCCeEEEeCCCC----cHhhHHHHHhCC---CCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEec----
Q ss_pred HHhCCchHHHHHHHHHHcCCCEE
Q 022296 96 IRNGPSAFKEYVEDCKQVGFDTI 118 (299)
Q Consensus 96 ~~qg~~~~~~yl~~~k~lGF~~I 118 (299)
.-.+-++.|+++|++.+
T Consensus 211 ------e~~~~~~~~~~~gi~~~ 227 (240)
T cd01948 211 ------ETEEQLELLRELGCDYV 227 (240)
T ss_pred ------CCHHHHHHHHHcCCCee
No 366
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=64.55 E-value=9.7 Score=34.09 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCCEEEecC---------Ccc-----cC-----ChhHHHHHHHHHHHcCCcccceeee
Q 022296 103 FKEYVEDCKQVGFDTIELNV---------GSL-----EI-----PEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISd---------Gti-----~i-----~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
+.+=|+++++|||++|++|- |.- .+ +.++..++|+.++++|++|+-.+-.
T Consensus 6 i~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~ 74 (316)
T PF00128_consen 6 IIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVP 74 (316)
T ss_dssp HHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred HHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeec
Confidence 33447788899999999862 111 11 2478899999999999999887755
No 367
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=64.50 E-value=9.4 Score=36.15 Aligned_cols=50 Identities=26% Similarity=0.393 Sum_probs=36.6
Q ss_pred cCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc
Q 022296 66 LMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL 125 (299)
Q Consensus 66 l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti 125 (299)
....+.|++.|+.+|++||.||. |++- -.+-++.++++|.|+||+-.|..
T Consensus 107 ~~~~~~l~~~i~~L~~~gIrvSL--FiDP--------~~~qi~~A~~~Gad~VELhTG~y 156 (239)
T PF03740_consen 107 AGNRDRLKPVIKRLKDAGIRVSL--FIDP--------DPEQIEAAKELGADRVELHTGPY 156 (239)
T ss_dssp CGGHHHHHHHHHHHHHTT-EEEE--EE-S---------HHHHHHHHHTT-SEEEEETHHH
T ss_pred hcCHHHHHHHHHHHHhCCCEEEE--EeCC--------CHHHHHHHHHcCCCEEEEehhHh
Confidence 34467899999999999999984 1111 13447889999999999999876
No 368
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=64.34 E-value=62 Score=29.44 Aligned_cols=98 Identities=14% Similarity=0.262 Sum_probs=60.7
Q ss_pred HHHHHHhhccc-ccEEEeeCccccc-----CChhHHHHHHHHHHhCCceecC-CcHH-------HHHHHhCCchHHHHHH
Q 022296 43 LEDIFESMGQF-VDGLKFSGGSHSL-----MPKPFIEEVVKRAHQHDVYVST-GDWA-------EHLIRNGPSAFKEYVE 108 (299)
Q Consensus 43 l~DlLe~ag~y-ID~lKfg~GTs~l-----~p~~~l~eKI~l~~~~gV~v~~-Gtlf-------E~a~~qg~~~~~~yl~ 108 (299)
+++-++.+.++ +|.+-|-.+..-. ++.+.+++.-++++++||.++. +.+. +....+.-+.+.+.++
T Consensus 12 ~~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~h~p~~~nl~s~d~~~r~~~~~~l~~~i~ 91 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSVHAPYLINLASPDKEKVEKSIERLIDEIK 91 (273)
T ss_pred HhHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCceecCCCCCHHHHHHHHHHHHHHHH
Confidence 34566666666 7777666555533 3455688888899999997764 4321 1111111125788899
Q ss_pred HHHHcCCCEEEecCCcccCC--hhHHHHHHHHHH
Q 022296 109 DCKQVGFDTIELNVGSLEIP--EETLLRYVRLVK 140 (299)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~--~~~r~~lI~~~~ 140 (299)
.|+++|.+.|=+--|+..-. .+.+.++++.++
T Consensus 92 ~A~~lGa~~vv~h~g~~~~~~~e~~~~~~~~~l~ 125 (273)
T smart00518 92 RCEELGIKALVFHPGSYLKQSKEEALNRIIESLN 125 (273)
T ss_pred HHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Confidence 99999999999877765221 333444444444
No 369
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=64.28 E-value=89 Score=28.09 Aligned_cols=105 Identities=20% Similarity=0.151 Sum_probs=60.8
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceec----CC-----------
Q 022296 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TG----------- 89 (299)
Q Consensus 25 GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~----~G----------- 89 (299)
++..+.+-|.. ....++.+++. | +|. +-.||..+.+++.+++-++.+.+.-|.++ .|
T Consensus 74 ~~pv~~~ggi~---~~~d~~~~~~~-G--~~~--vilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~ 145 (232)
T TIGR03572 74 FMPLTVGGGIR---SLEDAKKLLSL-G--ADK--VSINTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSD 145 (232)
T ss_pred CCCEEEECCCC---CHHHHHHHHHc-C--CCE--EEEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEEC
Confidence 44555555542 34444444443 2 333 35578888888888888877644324322 22
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--CChhHHHHHHHHHHHc
Q 022296 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--IPEETLLRYVRLVKSA 142 (299)
Q Consensus 90 tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~--i~~~~r~~lI~~~~~~ 142 (299)
+|.+. .+....++.+.+.+.|++.|.+++=+-+ .+. -..++++++++.
T Consensus 146 ~~~~~----~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g-~~~~~~~~i~~~ 195 (232)
T TIGR03572 146 NGRRA----TGRDPVEWAREAEQLGAGEILLNSIDRDGTMKG-YDLELIKTVSDA 195 (232)
T ss_pred CCccc----CCCCHHHHHHHHHHcCCCEEEEeCCCccCCcCC-CCHHHHHHHHhh
Confidence 22121 1224668889999999999999972221 111 125778877763
No 370
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=64.17 E-value=12 Score=35.48 Aligned_cols=48 Identities=13% Similarity=0.340 Sum_probs=37.2
Q ss_pred HHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecC
Q 022296 199 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 248 (299)
Q Consensus 199 ~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP 248 (299)
+++++.|++||++|+|=+. .+.+ ..+..++++++.++.|.++|+.=-.
T Consensus 88 e~v~~~l~aGa~rVvIGS~-av~~-~~i~~~~~~~i~~~fG~~~IvvsiD 135 (253)
T TIGR02129 88 TNAQEWLDEGASHVIVTSW-LFTK-GKFDLKRLKEIVSLVGKDRLIVDLS 135 (253)
T ss_pred HHHHHHHHcCCCEEEECcH-HHhC-CCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 6679999999999999554 3332 3566889999999999888886443
No 371
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=64.13 E-value=68 Score=30.09 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=18.3
Q ss_pred HHHHHHHHHccCcEEEEeccccccCC
Q 022296 198 SRRAERCLEAGADMIMIDSDDVCKHA 223 (299)
Q Consensus 198 i~~~~~dLeAGA~~VIiEargi~d~~ 223 (299)
.+.+++.+++||+-|+| ++.|+++.
T Consensus 223 ~ed~~~~~~~Gad~vlV-GsaI~~~~ 247 (260)
T PRK00278 223 PEDLKRLAKAGADAVLV-GESLMRAD 247 (260)
T ss_pred HHHHHHHHHcCCCEEEE-CHHHcCCC
Confidence 34558899999999987 44566654
No 372
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=64.09 E-value=12 Score=40.12 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHhC---C----ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc
Q 022296 70 PFIEEVVKRAHQH---D----VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL 125 (299)
Q Consensus 70 ~~l~eKI~l~~~~---g----V~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti 125 (299)
..+.|.++..++. + |++++.+|.+--+.- +..-++.+.+.+.|.|.|+||.|..
T Consensus 602 r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~--~~~~~~~~~l~~~g~d~i~vs~g~~ 662 (765)
T PRK08255 602 RYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTP--DDAVEIARAFKAAGADLIDVSSGQV 662 (765)
T ss_pred HHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCH--HHHHHHHHHHHhcCCcEEEeCCCCC
Confidence 4566777777763 3 355554555421111 1233566677778999999998864
No 373
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=63.72 E-value=1.3e+02 Score=29.02 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=16.1
Q ss_pred hhhhhhhHHHHHHHHHccCcEEEEe
Q 022296 191 VGVGINKSRRAERCLEAGADMIMID 215 (299)
Q Consensus 191 ~~~~~~~i~~~~~dLeAGA~~VIiE 215 (299)
+++. ++.++..-++|.|+|-+=
T Consensus 240 ~~e~---~~ia~~Le~~gvd~iev~ 261 (336)
T cd02932 240 LEDS---VELAKALKELGVDLIDVS 261 (336)
T ss_pred HHHH---HHHHHHHHHcCCCEEEEC
Confidence 5566 677777778899988663
No 374
>PHA02754 hypothetical protein; Provisional
Probab=63.67 E-value=5 Score=30.56 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=18.1
Q ss_pred hhHHHHHHHhhcccccEEEe
Q 022296 40 HNVLEDIFESMGQFVDGLKF 59 (299)
Q Consensus 40 ~~~l~DlLe~ag~yID~lKf 59 (299)
-++++|+|+.+|-|||-+|.
T Consensus 20 MRelkD~LSe~GiYi~RIka 39 (67)
T PHA02754 20 MRELKDILSEAGIYIDRIKA 39 (67)
T ss_pred HHHHHHHHhhCceEEEEEEE
Confidence 46899999999999999985
No 375
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=63.63 E-value=57 Score=31.00 Aligned_cols=140 Identities=11% Similarity=0.097 Sum_probs=81.5
Q ss_pred HHHhhcccccEEEeeCcccccCCh--hHHHHHHHHHHhC----CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 022296 46 IFESMGQFVDGLKFSGGSHSLMPK--PFIEEVVKRAHQH----DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (299)
Q Consensus 46 lLe~ag~yID~lKfg~GTs~l~p~--~~l~eKI~l~~~~----gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IE 119 (299)
|++.+| ||.+=+|+ .++.|+ +.+++..+...-. ++.+. .| ..+ +.-++.+++.|.+.|-
T Consensus 28 L~~~~G--v~~IEvg~--~~~s~~e~~av~~~~~~~~~~~~~~~~~~~--a~-----~~~----~~~~~~A~~~g~~~i~ 92 (280)
T cd07945 28 LLQELK--VDRIEVAS--ARVSEGEFEAVQKIIDWAAEEGLLDRIEVL--GF-----VDG----DKSVDWIKSAGAKVLN 92 (280)
T ss_pred HHHHhC--CCEEEecC--CCCCHHHHHHHHHHHHHhhhhccccCcEEE--Ee-----cCc----HHHHHHHHHCCCCEEE
Confidence 457777 88888874 334443 3344444422111 22221 12 122 3458888899999988
Q ss_pred ecCCc------------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCC
Q 022296 120 LNVGS------------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNP 187 (299)
Q Consensus 120 ISdGt------------i~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~ 187 (299)
++-.+ .+=..+.-.++|+.+++.|++| .++..+ .+ + |+
T Consensus 93 i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v--~~~~~d----~~---~--------~~------------- 142 (280)
T cd07945 93 LLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEV--NIYLED----WS---N--------GM------------- 142 (280)
T ss_pred EEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEE--EEEEEe----CC---C--------CC-------------
Confidence 87532 1222223345688889988763 455532 11 0 11
Q ss_pred ccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 188 EIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 188 ~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
..+++.+ ++.+++..++||+.|- |+|..|-..+..+.++++.+
T Consensus 143 r~~~~~~---~~~~~~~~~~G~~~i~-----l~DT~G~~~P~~v~~l~~~l 185 (280)
T cd07945 143 RDSPDYV---FQLVDFLSDLPIKRIM-----LPDTLGILSPFETYTYISDM 185 (280)
T ss_pred cCCHHHH---HHHHHHHHHcCCCEEE-----ecCCCCCCCHHHHHHHHHHH
Confidence 0126677 7888888999998763 67788888877777777554
No 376
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=63.51 E-value=14 Score=38.82 Aligned_cols=49 Identities=20% Similarity=0.350 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCCEEEecC----------Ccc-----cC-----ChhHHHHHHHHHHHcCCcccceeee
Q 022296 104 KEYVEDCKQVGFDTIELNV----------GSL-----EI-----PEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISd----------Gti-----~i-----~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
++.+.++++||+++||++- |.- .+ +.++..++|+.+.++|++|+-.+-.
T Consensus 160 ~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~ 228 (613)
T TIGR01515 160 DQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVP 228 (613)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3445788999999999943 111 11 2568899999999999999988755
No 377
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=63.46 E-value=1.2e+02 Score=30.21 Aligned_cols=138 Identities=17% Similarity=0.155 Sum_probs=83.4
Q ss_pred hhcccccEEEeeCcccccCChhHHHHHHHHHHhCCc--eecCCc---HHHHHHHhCCchHHHHHHHHHHcCCCEEEecC-
Q 022296 49 SMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTGD---WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV- 122 (299)
Q Consensus 49 ~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV--~v~~Gt---lfE~a~~qg~~~~~~yl~~~k~lGF~~IEISd- 122 (299)
.+.+|+|++|+|-+...=+| .|++ +-+.|. .+++|. +-|. ..-++.+.+-|-+-|=+-.
T Consensus 197 ~l~~~vd~lkI~s~~~~n~~--LL~~----~a~~gkPVilk~G~~~t~~e~---------~~Ave~i~~~Gn~~i~L~er 261 (360)
T PRK12595 197 VALDYVDVIQIGARNMQNFE--LLKA----AGRVNKPVLLKRGLSATIEEF---------IYAAEYIMSQGNGQIILCER 261 (360)
T ss_pred HHHHhCCeEEECcccccCHH--HHHH----HHccCCcEEEeCCCCCCHHHH---------HHHHHHHHHCCCCCEEEECC
Confidence 34567999999976654433 4433 334565 455673 3332 2234455667776666665
Q ss_pred CcccCChh----HHHHHHHHHHH-cCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhh
Q 022296 123 GSLEIPEE----TLLRYVRLVKS-AGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINK 197 (299)
Q Consensus 123 Gti~i~~~----~r~~lI~~~~~-~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (299)
|+..-|.. --++.|..+++ .++ | ++.- +.... ++ -+..
T Consensus 262 g~s~yp~~~~~~ldl~~i~~lk~~~~~---P-V~~d-~~Hs~---G~--------------------------r~~~--- 304 (360)
T PRK12595 262 GIRTYEKATRNTLDISAVPILKQETHL---P-VMVD-VTHST---GR--------------------------RDLL--- 304 (360)
T ss_pred ccCCCCCCCCCCcCHHHHHHHHHHhCC---C-EEEe-CCCCC---cc--------------------------hhhH---
Confidence 76654422 34567777777 222 2 4441 11111 11 1122
Q ss_pred HHHHHHHHHccCcEEEEecc-----ccccCCCcccHHHHHHHHhcc
Q 022296 198 SRRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 198 i~~~~~dLeAGA~~VIiEar-----gi~d~~G~~r~d~i~~ii~~l 238 (299)
...+...+.+|||-+|||-- ..+|..-.+..+.+.++++.+
T Consensus 305 ~~~a~aAva~GAdg~~iE~H~dp~~a~~D~~~sl~p~el~~l~~~i 350 (360)
T PRK12595 305 LPTAKAALAIGADGVMAEVHPDPAVALSDSAQQMDIPEFDRFLDEL 350 (360)
T ss_pred HHHHHHHHHcCCCeEEEEecCCCCCCCCchhhhCCHHHHHHHHHHH
Confidence 34567789999999999983 678998999999999998765
No 378
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=63.38 E-value=58 Score=30.59 Aligned_cols=71 Identities=24% Similarity=0.187 Sum_probs=44.7
Q ss_pred HHHHHHHc--CCCEEEecCCccc---------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCC
Q 022296 106 YVEDCKQV--GFDTIELNVGSLE---------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (299)
Q Consensus 106 yl~~~k~l--GF~~IEISdGti~---------i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~ 174 (299)
..+.+++. +++.||++=|+-. -..+...++++.+++.- -+| +.+|-. |
T Consensus 108 ~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~--~~p-v~vKi~-----------------~- 166 (300)
T TIGR01037 108 VAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT--DVP-VFAKLS-----------------P- 166 (300)
T ss_pred HHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCC-EEEECC-----------------C-
Confidence 33444443 3999999887543 24567788888888741 122 555521 0
Q ss_pred CCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEe
Q 022296 175 PRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMID 215 (299)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiE 215 (299)
+.++. ++.++...++|+|.|.+=
T Consensus 167 ---------------~~~~~---~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 167 ---------------NVTDI---TEIAKAAEEAGADGLTLI 189 (300)
T ss_pred ---------------ChhhH---HHHHHHHHHcCCCEEEEE
Confidence 02234 566777889999999885
No 379
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=63.34 E-value=39 Score=33.07 Aligned_cols=117 Identities=11% Similarity=0.152 Sum_probs=80.8
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEE-EeeCcccccCChhHHHHHHHHHHhCCc-eecCC--cHHHHHHHh-C-C
Q 022296 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGL-KFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G-P 100 (299)
Q Consensus 27 T~V~DkGl~~~~g~~~l~DlLe~ag~yID~l-Kfg~GTs~l~p~~~l~eKI~l~~~~gV-~v~~G--tlfE~a~~q-g-~ 100 (299)
|.-++=|=|..-.+..++.+|+....|++-. -+ |.-..|...-.++++.++++|| .++-| ++-+..+.. | +
T Consensus 59 tiy~GGGTPs~L~~~~l~~ll~~i~~~~~~~~ei---tiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~ 135 (353)
T PRK05904 59 TIYLGGGTPNCLNDQLLDILLSTIKPYVDNNCEF---TIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRT 135 (353)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhcCCCCeE---EEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC
Confidence 5556655432227789999999998885321 11 3344566666899999999999 88878 665555421 1 2
Q ss_pred ---chHHHHHHHHHHcCCC--EEEecCCcccCChhHHHHHHHHHHHcCCcc
Q 022296 101 ---SAFKEYVEDCKQVGFD--TIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (299)
Q Consensus 101 ---~~~~~yl~~~k~lGF~--~IEISdGti~i~~~~r~~lI~~~~~~G~~v 146 (299)
+.+.+-++.|++.||+ .+.+--|.=.-+.++..+.++.+.+.+..-
T Consensus 136 ~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~ 186 (353)
T PRK05904 136 HTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFNFILKHKINH 186 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHHHHHHHhcCCCE
Confidence 2355566778889998 456667777778888888899988877653
No 380
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=63.16 E-value=88 Score=30.41 Aligned_cols=90 Identities=20% Similarity=0.273 Sum_probs=63.5
Q ss_pred eCcccccCChhHHHHHHHHHHhCC--ceecCCcHHHHHHHhC--CchHHHHHHHHHHcCCCE-----EEecC----Ccc-
Q 022296 60 SGGSHSLMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNG--PSAFKEYVEDCKQVGFDT-----IELNV----GSL- 125 (299)
Q Consensus 60 g~GTs~l~p~~~l~eKI~l~~~~g--V~v~~GtlfE~a~~qg--~~~~~~yl~~~k~lGF~~-----IEISd----Gti- 125 (299)
-.|...-.+-+.+.+.++..+++. +.++.=+..|+..... ....++-++.+|+.|++. +|+-+ ..+
T Consensus 102 ~~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~ 181 (351)
T TIGR03700 102 VGGLHPNLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAGLDSMPGGGAEIFAEEVRQQIC 181 (351)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHhhcC
Confidence 355555556678899999999874 5555446788775442 124688899999999874 55533 111
Q ss_pred --cCChhHHHHHHHHHHHcCCcccce
Q 022296 126 --EIPEETLLRYVRLVKSAGLKAKPK 149 (299)
Q Consensus 126 --~i~~~~r~~lI~~~~~~G~~v~~E 149 (299)
..+.++|.+.|+.+++.|+++.+=
T Consensus 182 ~~~~~~~~~l~~i~~a~~~Gi~~~sg 207 (351)
T TIGR03700 182 PEKISAERWLEIHRTAHELGLKTNAT 207 (351)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCcceE
Confidence 467788899999999999998763
No 381
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=63.09 E-value=1e+02 Score=28.86 Aligned_cols=134 Identities=12% Similarity=0.106 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
.-++|++.+.+.|.|.|-+=--+. ..-.+.|+++++.|..+++-+-.+. +++.+. ...++.-...-.-++
T Consensus 79 ~P~~~i~~~~~aGad~It~H~Ea~----~~~~~~l~~Ik~~g~~~kaGlalnP---~Tp~~~---i~~~l~~vD~VLiMt 148 (228)
T PRK08091 79 DQFEVAKACVAAGADIVTLQVEQT----HDLALTIEWLAKQKTTVLIGLCLCP---ETPISL---LEPYLDQIDLIQILT 148 (228)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCc----ccHHHHHHHHHHCCCCceEEEEECC---CCCHHH---HHHHHhhcCEEEEEE
Confidence 367899999999999987754431 2345788999999885555444421 122100 000110000000000
Q ss_pred --cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCC-----ceEEecCCchhH
Q 022296 182 --FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE-----KTMFEATNPRTS 253 (299)
Q Consensus 182 --~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~e-----klifEAP~k~qQ 253 (299)
..-+-+.+-.+.+ +||+++++.++.--..+.||.+ |.++.+-+.++.+ -|.+ .-+|-++++.++
T Consensus 149 V~PGfgGQ~f~~~~l-~KI~~lr~~~~~~~~~~~IeVD------GGI~~~ti~~l~~-aGaD~~V~GSalF~~~d~~~~ 219 (228)
T PRK08091 149 LDPRTGTKAPSDLIL-DRVIQVENRLGNRRVEKLISID------GSMTLELASYLKQ-HQIDWVVSGSALFSQGELKTT 219 (228)
T ss_pred ECCCCCCccccHHHH-HHHHHHHHHHHhcCCCceEEEE------CCCCHHHHHHHHH-CCCCEEEEChhhhCCCCHHHH
Confidence 0000111223333 7888888887642234667776 7777777877764 4444 557877665444
No 382
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=63.08 E-value=9.6 Score=42.16 Aligned_cols=69 Identities=17% Similarity=0.344 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhCCc-eecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 022296 71 FIEEVVKRAHQHDV-YVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 71 ~l~eKI~l~~~~gV-~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
.+.+.|++|+++|+ -++|| ||+ +.+ .+|-+.|.+-|+..|==+--.+++ .-+|.+....|.+.|+.|+|
T Consensus 68 ~IdeII~iAk~~gaDaIhPGYGfL----SEn----~efA~~c~eaGI~FIGP~~e~ld~-~GdKv~Ar~~A~~agvPvip 138 (1149)
T COG1038 68 SIDEIIRIAKRSGADAIHPGYGFL----SEN----PEFARACAEAGITFIGPKPEVLDM-LGDKVKARNAAIKAGVPVIP 138 (1149)
T ss_pred cHHHHHHHHHHcCCCeecCCcccc----cCC----HHHHHHHHHcCCEEeCCCHHHHHH-hccHHHHHHHHHHcCCCccC
Confidence 48899999999999 78899 864 445 678889999998887655555544 23456777888888888777
No 383
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=62.98 E-value=13 Score=34.23 Aligned_cols=88 Identities=7% Similarity=0.117 Sum_probs=54.4
Q ss_pred cCCCEEEecCCcccC-ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccch
Q 022296 113 VGFDTIELNVGSLEI-PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEV 191 (299)
Q Consensus 113 lGF~~IEISdGti~i-~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (299)
.|++.+=|=|=.-.. ....-..+|+++.+. ++.+. .+| +.
T Consensus 44 ~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~-------~~~pi---~vG--GG--------------------------- 84 (234)
T PRK13587 44 ECVNRIHIVDLIGAKAQHAREFDYIKSLRRL-------TTKDI---EVG--GG--------------------------- 84 (234)
T ss_pred cCCCEEEEEECcccccCCcchHHHHHHHHhh-------cCCeE---EEc--CC---------------------------
Confidence 589988887755443 444556788888772 22211 111 10
Q ss_pred hhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecCC
Q 022296 192 GVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATN 249 (299)
Q Consensus 192 ~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP~ 249 (299)
+++.+.+++.|++||++|++=+.-+. ..++++++.+++| +++++--..
T Consensus 85 ---Irs~e~v~~~l~~Ga~kvvigt~a~~------~~~~l~~~~~~fg-~~ivvslD~ 132 (234)
T PRK13587 85 ---IRTKSQIMDYFAAGINYCIVGTKGIQ------DTDWLKEMAHTFP-GRIYLSVDA 132 (234)
T ss_pred ---cCCHHHHHHHHHCCCCEEEECchHhc------CHHHHHHHHHHcC-CCEEEEEEe
Confidence 12377789999999999999654221 3567777777775 666655443
No 384
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=62.95 E-value=34 Score=32.84 Aligned_cols=105 Identities=24% Similarity=0.266 Sum_probs=60.6
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCc-------------ccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccc
Q 022296 99 GPSAFKEYVEDCKQVGFDTIELNVGS-------------LEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRD 164 (299)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGt-------------i~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d 164 (299)
+|+.+.+-.+.+.++|++.|.|+=|. +--.++.-.++++.+++. + --+.+|-- +|.. |
T Consensus 64 ~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~----~pvsvKiR---~g~~-~ 135 (309)
T PF01207_consen 64 DPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP----IPVSVKIR---LGWD-D 135 (309)
T ss_dssp -HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S----SEEEEEEE---SECT--
T ss_pred cHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccc----cceEEecc---cccc-c
Confidence 33455556677888999999999774 223556667788888774 2 12455422 1111 1
Q ss_pred ccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc-ccccCCCcccHHHHHHHHhccC
Q 022296 165 RAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD-DVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar-gi~d~~G~~r~d~i~~ii~~l~ 239 (299)
+.+.. ++.++...++|++.|+|-+| .--...|..+.+.+.++.+.++
T Consensus 136 -------------------------~~~~~---~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ 183 (309)
T PF01207_consen 136 -------------------------SPEET---IEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALP 183 (309)
T ss_dssp --------------------------CHHH---HHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-T
T ss_pred -------------------------chhHH---HHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhccc
Confidence 13445 77789999999999999999 2222234777788888777666
No 385
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=62.69 E-value=1.3e+02 Score=29.50 Aligned_cols=127 Identities=14% Similarity=0.097 Sum_probs=0.0
Q ss_pred CCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhH--HH---HHHHHHHhC-CceecC-C-cHHHHHHHhCCchH
Q 022296 32 PHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPF--IE---EVVKRAHQH-DVYVST-G-DWAEHLIRNGPSAF 103 (299)
Q Consensus 32 kGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~--l~---eKI~l~~~~-gV~v~~-G-tlfE~a~~qg~~~~ 103 (299)
+++ ++..+...++..+..-.-+.++.+.-.++|+.. .+ +.|+-.++. +++|.- + + .+ .-
T Consensus 133 ~~~----~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g-------~g--~s 199 (352)
T PRK05437 133 YGY----GVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVG-------FG--IS 199 (352)
T ss_pred CCC----CHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCC-------CC--Cc
Q ss_pred HHHHHHHHHcCCCEEEecC--CcccCChhHHHH------------------HHHHHHHc--CCcccceeeeecCCCCCCC
Q 022296 104 KEYVEDCKQVGFDTIELNV--GSLEIPEETLLR------------------YVRLVKSA--GLKAKPKFAVMFNKSDIPS 161 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISd--Gti~i~~~~r~~------------------lI~~~~~~--G~~v~~E~gvK~~~sevg~ 161 (299)
.+..+.+.+.|.|+|.||. ||--.+.+.... .|..+++. .+.+..-=|+ .+
T Consensus 200 ~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI---~~---- 272 (352)
T PRK05437 200 KETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGI---RN---- 272 (352)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCC---CC----
Q ss_pred cccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEE
Q 022296 162 DRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMI 214 (299)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIi 214 (299)
-..+.+.|.+||+.|.+
T Consensus 273 ------------------------------------~~dv~k~l~~GAd~v~i 289 (352)
T PRK05437 273 ------------------------------------GLDIAKALALGADAVGM 289 (352)
T ss_pred ------------------------------------HHHHHHHHHcCCCEEEE
No 386
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=62.56 E-value=24 Score=33.99 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc
Q 022296 103 FKEYVEDCKQVGFDTIELNVGSL 125 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti 125 (299)
.-++.+.+.+.|+|+||||.|+.
T Consensus 238 a~~ia~~Le~~Gvd~iev~~g~~ 260 (338)
T cd04733 238 ALEVVEALEEAGVDLVELSGGTY 260 (338)
T ss_pred HHHHHHHHHHcCCCEEEecCCCC
Confidence 34667777888999999999975
No 387
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=62.53 E-value=11 Score=36.80 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=18.1
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc
Q 022296 103 FKEYVEDCKQVGFDTIELNVGSL 125 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti 125 (299)
..++++.+.+.|+|+|+||.|+.
T Consensus 237 ~~~i~~~L~~~GvD~I~Vs~g~~ 259 (353)
T cd04735 237 TLALVDKLADKGLDYLHISLWDF 259 (353)
T ss_pred HHHHHHHHHHcCCCEEEeccCcc
Confidence 34556777788999999999865
No 388
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=62.45 E-value=21 Score=35.49 Aligned_cols=115 Identities=17% Similarity=0.130 Sum_probs=71.2
Q ss_pred chHHHHHHHHHHcCCCEEEec---CCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCc
Q 022296 101 SAFKEYVEDCKQVGFDTIELN---VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEIS---dGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~ 177 (299)
+.+.+-+.++-.=|.|.|-.. ...--+|.++|.+++..+.+. +..|-|.+ +- | ++
T Consensus 141 ~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~---a~~eTG~~---------~~-----y-~~---- 198 (364)
T cd08210 141 AELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAE---ANAETGGR---------TL-----Y-AP---- 198 (364)
T ss_pred HHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHH---HHhhcCCc---------ce-----E-EE----
Confidence 345566677778899999433 344578999999999888772 11122221 10 1 01
Q ss_pred cchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc--c------cccCCC-------------------cccH-H
Q 022296 178 TDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD--D------VCKHAD-------------------SLRA-D 229 (299)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar--g------i~d~~G-------------------~~r~-d 229 (299)
++. -+..++ +++++...++||+.||+--- | +.++.+ .+.. -
T Consensus 199 -------Nit-a~~~em---~~ra~~a~~~Ga~~vMv~~~~~G~~~~~~l~~~~~~l~i~aHra~~ga~~~~~~~is~~~ 267 (364)
T cd08210 199 -------NVT-GPPTQL---LERARFAKEAGAGGVLIAPGLTGLDTFRELAEDFDFLPILAHPAFAGAFVSSGDGISHAL 267 (364)
T ss_pred -------ecC-CCHHHH---HHHHHHHHHcCCCEEEeecccchHHHHHHHHhcCCCcEEEEccccccccccCCCcccHHH
Confidence 011 125688 88899999999999999863 2 222221 0222 2
Q ss_pred HHHHHHhccCCCceEEecC
Q 022296 230 IIAKVIGRLGLEKTMFEAT 248 (299)
Q Consensus 230 ~i~~ii~~l~~eklifEAP 248 (299)
++.++..-.|.+-+++=.|
T Consensus 268 ~~~kl~RlaGad~~~~~~~ 286 (364)
T cd08210 268 LFGTLFRLAGADAVIFPNY 286 (364)
T ss_pred HHHHHHHHhCCCEEEeCCC
Confidence 4778888788888877444
No 389
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=62.36 E-value=17 Score=37.33 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=54.2
Q ss_pred ccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCC----chHHHHHHHHHHcCCCEEEecCCcccCCh
Q 022296 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGP----SAFKEYVEDCKQVGFDTIELNVGSLEIPE 129 (299)
Q Consensus 54 ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~----~~~~~yl~~~k~lGF~~IEISdGti~i~~ 129 (299)
||.+.+== +|-+..+++.-|+.+++||-.+-. .+++.-.| +.+-++.++..++|+|.|=|-|=+--+++
T Consensus 112 idvfRiFD---AlND~RNl~~ai~a~kk~G~h~q~----~i~YT~sPvHt~e~yv~~akel~~~g~DSIciKDmaGlltP 184 (472)
T COG5016 112 IDVFRIFD---ALNDVRNLKTAIKAAKKHGAHVQG----TISYTTSPVHTLEYYVELAKELLEMGVDSICIKDMAGLLTP 184 (472)
T ss_pred CcEEEech---hccchhHHHHHHHHHHhcCceeEE----EEEeccCCcccHHHHHHHHHHHHHcCCCEEEeecccccCCh
Confidence 55554421 455566777777777777753211 01111111 13444555666789999999999999999
Q ss_pred hHHHHHHHHHHH
Q 022296 130 ETLLRYVRLVKS 141 (299)
Q Consensus 130 ~~r~~lI~~~~~ 141 (299)
..--++|+.+|+
T Consensus 185 ~~ayelVk~iK~ 196 (472)
T COG5016 185 YEAYELVKAIKK 196 (472)
T ss_pred HHHHHHHHHHHH
Confidence 999999999999
No 390
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=62.18 E-value=17 Score=35.33 Aligned_cols=37 Identities=11% Similarity=0.263 Sum_probs=22.8
Q ss_pred HHHHHHHHcCCCEEEecCCccc-CChhHHHHHHHHHHH
Q 022296 105 EYVEDCKQVGFDTIELNVGSLE-IPEETLLRYVRLVKS 141 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~-i~~~~r~~lI~~~~~ 141 (299)
++.+.+.+.|+|.|+||.|... ....-...+.+.+++
T Consensus 245 ~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~ 282 (338)
T cd02933 245 YLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRK 282 (338)
T ss_pred HHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHH
Confidence 4445555569999999999653 122334455555555
No 391
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=62.01 E-value=31 Score=32.26 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 022296 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
++.-+..++++|-+.|-.=.=--.=..++...+-+.+.++||..-|-=|+
T Consensus 137 vetAiaml~dmG~~SiKffPm~Gl~~leE~~avAkA~a~~g~~lEPTGGI 186 (218)
T PF07071_consen 137 VETAIAMLKDMGGSSIKFFPMGGLKHLEELKAVAKACARNGFTLEPTGGI 186 (218)
T ss_dssp HHHHHHHHHHTT--EEEE---TTTTTHHHHHHHHHHHHHCT-EEEEBSS-
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceeCCcCCc
Confidence 77888888888888887532222223556666677777778876443344
No 392
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=61.95 E-value=1.2e+02 Score=29.50 Aligned_cols=104 Identities=13% Similarity=0.137 Sum_probs=70.9
Q ss_pred hHHHHHHHhhcc--cccEEEeeCcccccCChhHHHHHHHHHHhC----CceecC---CcHHHHHHHhCCchHHHHHHHHH
Q 022296 41 NVLEDIFESMGQ--FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH----DVYVST---GDWAEHLIRNGPSAFKEYVEDCK 111 (299)
Q Consensus 41 ~~l~DlLe~ag~--yID~lKfg~GTs~l~p~~~l~eKI~l~~~~----gV~v~~---GtlfE~a~~qg~~~~~~yl~~~k 111 (299)
..++.+++.... -|.-+-|.+|--.+.+.+.|.+.++.+++. +|.+.+ +++-.. --++.++..+
T Consensus 145 ~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~~P~r-------it~el~~~L~ 217 (331)
T TIGR00238 145 KKWQKALDYIAEHPEIIEILISGGDPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVVIPQR-------ITDELCELLA 217 (331)
T ss_pred HHHHHHHHHHHhCCCcCEEEEECCccccCCHHHHHHHHHHHHhcCCccEEEeecCCCccCchh-------cCHHHHHHHH
Confidence 455665655443 366788999999888876788888887774 455543 333211 1246777788
Q ss_pred HcCCCEEEec--CCcccCChhHHHHHHHHHHHcCCcccceeee
Q 022296 112 QVGFDTIELN--VGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 112 ~lGF~~IEIS--dGti~i~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
+.|+..+=+| ++.-++.++ -.+.|++++++|+.+.-....
T Consensus 218 ~~~~~~~~vsh~nh~~Ei~~~-~~~ai~~L~~aGi~v~~qtvL 259 (331)
T TIGR00238 218 SFELQLMLVTHINHCNEITEE-FAEAMKKLRTVNVTLLNQSVL 259 (331)
T ss_pred hcCCcEEEEccCCChHhCCHH-HHHHHHHHHHcCCEEEeecce
Confidence 8899998888 555566554 458899999999886555544
No 393
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=61.93 E-value=28 Score=35.98 Aligned_cols=101 Identities=14% Similarity=0.146 Sum_probs=68.5
Q ss_pred chhHHHHHHHhhcc-cccEEEeeCccc----ccCChhHHHHHHHHHHhCCceecC-Cc-HHHHHH--------HhCCchH
Q 022296 39 SHNVLEDIFESMGQ-FVDGLKFSGGSH----SLMPKPFIEEVVKRAHQHDVYVST-GD-WAEHLI--------RNGPSAF 103 (299)
Q Consensus 39 g~~~l~DlLe~ag~-yID~lKfg~GTs----~l~p~~~l~eKI~l~~~~gV~v~~-Gt-lfE~a~--------~qg~~~~ 103 (299)
.+..+++.+...|. =|-++-..-.+. ..+|-+.+++.-++||+|||++.. |. +||.|+ .++ -.+
T Consensus 168 dl~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~-~si 246 (467)
T TIGR02617 168 DLEGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKN-WSI 246 (467)
T ss_pred CHHHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcC-CCH
Confidence 67788999987652 233333222111 257778999999999999999988 75 999663 222 357
Q ss_pred HHHHHHHHHcCCCEEEecC---------CcccCChhHHHHHHHHHHH
Q 022296 104 KEYVEDCKQVGFDTIELNV---------GSLEIPEETLLRYVRLVKS 141 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISd---------Gti~i~~~~r~~lI~~~~~ 141 (299)
.++.++.-+ .||.|-+|- |.+-.+.+.+.++-++++.
T Consensus 247 ~eI~rE~~~-~aDsvt~slsKglgApvGg~Lag~d~~~~~l~~~~~~ 292 (467)
T TIGR02617 247 EQITRETYK-YADMLAMSAKKDAMVPMGGLLCFKDDSFFDVYTECRT 292 (467)
T ss_pred HHHHHHhhc-cCCEEEEEcCCCCCCcccceEEecchhHHHHHHHHHh
Confidence 777766544 378888773 4556677766677777776
No 394
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=61.90 E-value=1.2e+02 Score=32.00 Aligned_cols=146 Identities=16% Similarity=0.117 Sum_probs=92.9
Q ss_pred EEEeeCcccccCChh-----------HHHHHHHHHHhCCce--ecCCc-----H-HHHHHHhCCchHHHHHHHHHHcCCC
Q 022296 56 GLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVY--VSTGD-----W-AEHLIRNGPSAFKEYVEDCKQVGFD 116 (299)
Q Consensus 56 ~lKfg~GTs~l~p~~-----------~l~eKI~l~~~~gV~--v~~Gt-----l-fE~a~~qg~~~~~~yl~~~k~lGF~ 116 (299)
.+-+-..||-++.+. .+++-++++++++.. .+.|+ | .|.+-.-+++.+-+.++.+.+.|-+
T Consensus 120 ~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a~~ag~~ 199 (564)
T TIGR00970 120 TVHFYNATSILFREVVFRASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCEAVKEVWAP 199 (564)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecccCCCCCHHHHHHHHHHHHHhCCC
Confidence 455555555444332 244566678998752 22232 1 3555555667888999999999974
Q ss_pred ------EEEecCCcccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCcc
Q 022296 117 ------TIELNVGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEI 189 (299)
Q Consensus 117 ------~IEISdGti~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (299)
.|-+.|-.--..+..-.++|+.+++. +=....-+++.+.. |
T Consensus 200 ~~~~~~~i~l~DTvG~a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HN-------D------------------------- 247 (564)
T TIGR00970 200 TPERPIIFNLPATVEMTTPNVYADSIEYFSTNIAEREKVCLSLHPHN-------D------------------------- 247 (564)
T ss_pred ccCCeeEEEeccccCccCHHHHHHHHHHHHHhcCcccCceEEEEECC-------C-------------------------
Confidence 77888988888999999999999874 10000114443221 1
Q ss_pred chhhhhhhHHHHHHHHHccCcEEEEecc--ccccCCCcccHHHHHHHHhccC
Q 022296 190 EVGVGINKSRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLG 239 (299)
Q Consensus 190 ~~~~~~~~i~~~~~dLeAGA~~VIiEar--gi~d~~G~~r~d~i~~ii~~l~ 239 (299)
.... +-.+...++|||+.| |+- |+=+..||...+.+--.+...|
T Consensus 248 -~GlA---vANslaAv~aGa~~v--~gt~~G~GERaGNa~le~lv~~L~~~g 293 (564)
T TIGR00970 248 -RGTA---VAAAELGFLAGADRI--EGCLFGNGERTGNVDLVTLALNLYTQG 293 (564)
T ss_pred -CChH---HHHHHHHHHhCCCEE--EeecCcCCccccCccHHHHHHHHHhcC
Confidence 2334 666788999999984 664 7756688888776655554333
No 395
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=61.43 E-value=35 Score=34.30 Aligned_cols=108 Identities=14% Similarity=0.183 Sum_probs=74.1
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCc-eecCC--cHHHHHH---HhC--CchHHHHHHHH
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLI---RNG--PSAFKEYVEDC 110 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV-~v~~G--tlfE~a~---~qg--~~~~~~yl~~~ 110 (299)
.+..+.++++..-.+..+.+-..=|.-..|...=.++++.++++|+ .++-| ++=+..+ .++ .+.+.+-++.|
T Consensus 117 ~~~~l~~ll~~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l 196 (455)
T TIGR00538 117 SPEQISRLMKLIRENFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHA 196 (455)
T ss_pred CHHHHHHHHHHHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 5788999999887764422111123334455555789999999999 77777 5544333 221 12366678888
Q ss_pred HHcCCC--EEEecCCcccCChhHHHHHHHHHHHcCCcc
Q 022296 111 KQVGFD--TIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (299)
Q Consensus 111 k~lGF~--~IEISdGti~i~~~~r~~lI~~~~~~G~~v 146 (299)
++.||+ .+-+.-|.-.-+.++..+.++.+.+.|..-
T Consensus 197 ~~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~ 234 (455)
T TIGR00538 197 REAGFTSINIDLIYGLPKQTKESFAKTLEKVAELNPDR 234 (455)
T ss_pred HhcCCCcEEEeEEeeCCCCCHHHHHHHHHHHHhcCCCE
Confidence 999998 456667777788888999999999977653
No 396
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=61.38 E-value=39 Score=29.42 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=26.3
Q ss_pred chHHHHHHHHHHcCCCEEEec--CCcccCChhHHHHHHHHHHH
Q 022296 101 SAFKEYVEDCKQVGFDTIELN--VGSLEIPEETLLRYVRLVKS 141 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEIS--dGti~i~~~~r~~lI~~~~~ 141 (299)
..+.+-++.+.+.|.|+||+- ||..-=....=.+.++.+++
T Consensus 11 ~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~ 53 (210)
T TIGR01163 11 ARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRK 53 (210)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHh
Confidence 467888999999999999993 44441111122345566554
No 397
>PRK12313 glycogen branching enzyme; Provisional
Probab=61.32 E-value=17 Score=38.15 Aligned_cols=50 Identities=16% Similarity=0.302 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCCEEEecC----------Cc-----ccC-----ChhHHHHHHHHHHHcCCcccceeee
Q 022296 103 FKEYVEDCKQVGFDTIELNV----------GS-----LEI-----PEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISd----------Gt-----i~i-----~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
.++.+.++|+||+++|+++= |. ..+ +.++..++|+.+.++|++|+-.+-.
T Consensus 173 ~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~ 242 (633)
T PRK12313 173 ADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVP 242 (633)
T ss_pred HHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 45567899999999999853 11 111 2578999999999999999887654
No 398
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=61.14 E-value=1e+02 Score=32.52 Aligned_cols=80 Identities=6% Similarity=0.025 Sum_probs=49.8
Q ss_pred hhHHHHHHHhhccc-ccEEEeeCcccccCChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022296 40 HNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (299)
Q Consensus 40 ~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (299)
...+.+.++...++ +|++=+.+|...-+..+.+.---.+.+.+|+.+.+- |-. -++...+.+.+..++.+|++.
T Consensus 337 ~~~l~~~~~~L~~~~~d~i~Vtd~~~g~~r~~s~~~a~~l~~~~gi~~i~Hltc~----d~n~~~l~~~L~~~~~~Gv~n 412 (612)
T PRK08645 337 TDKFLEGAKALKEAGVDAITLADNPLARVRISNIALASLIKRELGIEPLVHITCR----DRNLIGLQSHLLGLHALGIRN 412 (612)
T ss_pred HHHHHHHHHHHhcCCCCEEEcCCCCCcccccCHHHHHHHHHHHhCCCeeeEecCC----CcCHHHHHHHHHHHHHcCCce
Confidence 34566666666667 899999887766444334444334444568766542 211 223335788899999999998
Q ss_pred EEecCC
Q 022296 118 IELNVG 123 (299)
Q Consensus 118 IEISdG 123 (299)
|=+=.|
T Consensus 413 ILaLrG 418 (612)
T PRK08645 413 VLAITG 418 (612)
T ss_pred EEEccC
Confidence 844444
No 399
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=61.12 E-value=17 Score=34.90 Aligned_cols=50 Identities=18% Similarity=0.338 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC
Q 022296 71 FIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG 123 (299)
Q Consensus 71 ~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdG 123 (299)
.+.+-|+.++++|+.+..- |.+. ..+.+.+.++++.++++|++.|-+|-+
T Consensus 150 ~~l~~I~~l~~~G~~v~v~~tv~~---~~n~~ei~~~~~~~~~lGv~~i~i~p~ 200 (318)
T TIGR03470 150 RAVEAIREAKARGFRVTTNTTLFN---DTDPEEVAEFFDYLTDLGVDGMTISPG 200 (318)
T ss_pred HHHHHHHHHHHCCCcEEEEEEEeC---CCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 3445566666666654433 2221 123345666666666666666666544
No 400
>PRK15447 putative protease; Provisional
Probab=61.07 E-value=37 Score=32.51 Aligned_cols=87 Identities=21% Similarity=0.132 Sum_probs=53.6
Q ss_pred HHHHHHHhhcc-cccEEEeeCccccc---CChhHHHHHHHHHHhCCceecCC--cH-H-HHHHHhCCchHHHHHHHHHHc
Q 022296 42 VLEDIFESMGQ-FVDGLKFSGGSHSL---MPKPFIEEVVKRAHQHDVYVSTG--DW-A-EHLIRNGPSAFKEYVEDCKQV 113 (299)
Q Consensus 42 ~l~DlLe~ag~-yID~lKfg~GTs~l---~p~~~l~eKI~l~~~~gV~v~~G--tl-f-E~a~~qg~~~~~~yl~~~k~l 113 (299)
.++|+.....+ -+|-+=+|...... +..+.+++-++.+|++|.++|.- .. . +. .++.+.+.++ .
T Consensus 16 ~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~-------e~~~l~~~l~-~ 87 (301)
T PRK15447 16 TVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPS-------ELKELRRLVE-N 87 (301)
T ss_pred CHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHH-------HHHHHHHHHh-c
Confidence 45566555533 58888888654332 56677999999999999987753 22 1 22 3333333232 3
Q ss_pred CCCEEEecCCcccCChhHHHHHHHHHHHcCCcc
Q 022296 114 GFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (299)
Q Consensus 114 GF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v 146 (299)
|.++|.|+| ...++.+++.|+.+
T Consensus 88 ~~~~v~v~d----------~g~l~~~~e~~~~l 110 (301)
T PRK15447 88 GEFLVEAND----------LGAVRLLAERGLPF 110 (301)
T ss_pred CCCEEEEeC----------HHHHHHHHhcCCCE
Confidence 777888876 34555666555543
No 401
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=61.02 E-value=11 Score=35.13 Aligned_cols=58 Identities=21% Similarity=0.326 Sum_probs=41.3
Q ss_pred cCChhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHH
Q 022296 66 LMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKS 141 (299)
Q Consensus 66 l~p~~~l~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~ 141 (299)
++.+..-.+.++.|+++||.+.|| |.-|+.- +.++|++.|-+==.. .+. ..+|+.++.
T Consensus 95 iVsP~~~~~v~~~~~~~~i~~iPG~~TpsEi~~-------------A~~~Ga~~vKlFPA~-~~G----~~~ikal~~ 154 (222)
T PRK07114 95 IVTPLFNPDIAKVCNRRKVPYSPGCGSLSEIGY-------------AEELGCEIVKLFPGS-VYG----PGFVKAIKG 154 (222)
T ss_pred EECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHH-------------HHHCCCCEEEECccc-ccC----HHHHHHHhc
Confidence 344456677888999999999998 7888764 456999999987533 233 356766665
No 402
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=60.91 E-value=86 Score=29.00 Aligned_cols=154 Identities=13% Similarity=0.090 Sum_probs=87.5
Q ss_pred CCCCCCceeEecCCCCCCc------chhHHHHHHHhhcccccE-EEeeCcc-cccCChhHHHHHHHHHHhCCceecC---
Q 022296 20 KPRRFGVTEMRSPHYTLSS------SHNVLEDIFESMGQFVDG-LKFSGGS-HSLMPKPFIEEVVKRAHQHDVYVST--- 88 (299)
Q Consensus 20 KPR~~GlT~V~DkGl~~~~------g~~~l~DlLe~ag~yID~-lKfg~GT-s~l~p~~~l~eKI~l~~~~gV~v~~--- 88 (299)
.+...++.++++-+.+... -...+++.++.-.+-||+ .|+|.-+ .-.+ +.+++..++||++|+++.-
T Consensus 67 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~~~~~~~~--~~~~~i~~~~~~~g~~liv~~~ 144 (258)
T TIGR01949 67 YGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVNVGSDTEWEQI--RDLGMIAEICDDWGVPLLAMMY 144 (258)
T ss_pred cCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEecCCchHHHHH--HHHHHHHHHHHHcCCCEEEEEe
Confidence 4567788888865543321 113478888887777777 5555311 1222 2578888899999975432
Q ss_pred --CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccc
Q 022296 89 --GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDR 165 (299)
Q Consensus 89 --GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~-G~~v~~E~gvK~~~sevg~~~d~ 165 (299)
|--+.. ..++.+.+..+.+.++|-|+|-+|-. .+ .+.++++.+. .. .++--. |.+.
T Consensus 145 ~~Gvh~~~---~~~~~~~~~~~~a~~~GADyikt~~~---~~----~~~l~~~~~~~~i------PVva~G---Gi~~-- 203 (258)
T TIGR01949 145 PRGPHIDD---RDPELVAHAARLGAELGADIVKTPYT---GD----IDSFRDVVKGCPA------PVVVAG---GPKT-- 203 (258)
T ss_pred ccCccccc---ccHHHHHHHHHHHHHHCCCEEeccCC---CC----HHHHHHHHHhCCC------cEEEec---CCCC--
Confidence 200100 11123444457788999999999722 12 3455555542 21 222100 0111
Q ss_pred cccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCC
Q 022296 166 AFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHA 223 (299)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~ 223 (299)
-+.++. .+.++..+++||+-|. =++.|+...
T Consensus 204 -----------------------~~~~~~---~~~i~~~~~aGa~Gia-~g~~i~~~~ 234 (258)
T TIGR01949 204 -----------------------NSDREF---LQMIKDAMEAGAAGVA-VGRNIFQHD 234 (258)
T ss_pred -----------------------CCHHHH---HHHHHHHHHcCCcEEe-hhhHhhcCC
Confidence 114556 7778888999999543 356777665
No 403
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=60.54 E-value=1.4e+02 Score=27.55 Aligned_cols=93 Identities=24% Similarity=0.395 Sum_probs=67.2
Q ss_pred HHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022296 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (299)
Q Consensus 43 l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~-gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (299)
+.+.++..|. +-.+=|++|--.+-+ .+.+.++.+++. +++++..|.- .. .-+++++..+++|++.|-||
T Consensus 56 ~~~~~~~~g~-~~~v~~~gGEPll~~--d~~ei~~~~~~~~~~~~~~~TnG-~~------~~~~~~~~l~~~g~~~v~iS 125 (347)
T COG0535 56 VIDELAELGE-IPVVIFTGGEPLLRP--DLLEIVEYARKKGGIRVSLSTNG-TL------LTEEVLEKLKEAGLDYVSIS 125 (347)
T ss_pred HHHHHHHcCC-eeEEEEeCCCccccc--cHHHHHHHHhhcCCeEEEEeCCC-cc------CCHHHHHHHHhcCCcEEEEE
Confidence 3566677776 888889999888885 799999999965 7766654322 11 12467788899999999999
Q ss_pred CCcccCCh-----------hHHHHHHHHHHHcCCc
Q 022296 122 VGSLEIPE-----------ETLLRYVRLVKSAGLK 145 (299)
Q Consensus 122 dGti~i~~-----------~~r~~lI~~~~~~G~~ 145 (299)
-.+.+-.. +...+.|+.+++.|+.
T Consensus 126 id~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~ 160 (347)
T COG0535 126 LDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGIL 160 (347)
T ss_pred ecCCChhhhhhhcCCCcHHHHHHHHHHHHHHcCCe
Confidence 77754332 3556778888887775
No 404
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=60.46 E-value=1.3e+02 Score=29.51 Aligned_cols=125 Identities=14% Similarity=0.126 Sum_probs=73.1
Q ss_pred CCCceeEecCCC---CCCcchhHHHHHHHhhc--ccccEEEee------------------------Cccc-----ccCC
Q 022296 23 RFGVTEMRSPHY---TLSSSHNVLEDIFESMG--QFVDGLKFS------------------------GGSH-----SLMP 68 (299)
Q Consensus 23 ~~GlT~V~DkGl---~~~~g~~~l~DlLe~ag--~yID~lKfg------------------------~GTs-----~l~p 68 (299)
..|+|.|.|-+. +...+...+++.++.+. .|+|+.-.+ .+.+ ...+
T Consensus 81 ~gGvTtv~d~p~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ei~~l~~~G~~giKv~~~~~~~~~~~~~~ 160 (447)
T cd01315 81 AGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLHVDVGFWGGLVPGNLDQLRPLDEAGVVGFKCFLCPSGVDEFPAVD 160 (447)
T ss_pred hCCceEEEeCCCCCCCCcCCHHHHHHHHHHhccCceeeEEEEEeecCCCHHHHHHHHHcCCcEEEEEecccCCCCcccCC
Confidence 359999998753 22224667777777763 466664322 1110 1234
Q ss_pred hhHHHHHHHHHHhCCceecC--Cc--HHHHHHH--------------h------CCchHHHHHHHHHHcCCCEEEecCCc
Q 022296 69 KPFIEEVVKRAHQHDVYVST--GD--WAEHLIR--------------N------GPSAFKEYVEDCKQVGFDTIELNVGS 124 (299)
Q Consensus 69 ~~~l~eKI~l~~~~gV~v~~--Gt--lfE~a~~--------------q------g~~~~~~yl~~~k~lGF~~IEISdGt 124 (299)
.+.+++-++.++++|..++. +. ++..... + -...+.++++.+++.|... =++-
T Consensus 161 ~~~l~~~~~~a~~~g~~v~vH~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~~g~~i-hi~h-- 237 (447)
T cd01315 161 DEQLEEAMKELAKTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKETGCRL-HIVH-- 237 (447)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHhHhhcCCCChHHhhccCCHHHHHHHHHHHHHHHHHhCCCE-EEEe--
Confidence 56688888888888876654 32 2221110 0 0125788888899988543 2222
Q ss_pred ccCChhHHHHHHHHHHHcCCcccceeee
Q 022296 125 LEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 125 i~i~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
++...=.++|+.++..|+.+.-|+..
T Consensus 238 --~s~~~~~~~i~~~~~~g~~i~~e~~~ 263 (447)
T cd01315 238 --LSSAEAVPLIREARAEGVDVTVETCP 263 (447)
T ss_pred --CCCHHHHHHHHHHHHCCCceEEEecc
Confidence 22345568888888888887666543
No 405
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=60.36 E-value=6.6 Score=35.81 Aligned_cols=95 Identities=18% Similarity=0.147 Sum_probs=58.3
Q ss_pred ChhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 022296 68 PKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (299)
Q Consensus 68 p~~~l~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (299)
.+..-.+.++.|+++||.+.|| |.-|+.-. .++|++.|-+==...- -=..+|+.++.
T Consensus 86 SP~~~~~v~~~~~~~~i~~iPG~~TptEi~~A-------------~~~G~~~vK~FPA~~~----GG~~~ik~l~~---- 144 (196)
T PF01081_consen 86 SPGFDPEVIEYAREYGIPYIPGVMTPTEIMQA-------------LEAGADIVKLFPAGAL----GGPSYIKALRG---- 144 (196)
T ss_dssp ESS--HHHHHHHHHHTSEEEEEESSHHHHHHH-------------HHTT-SEEEETTTTTT----THHHHHHHHHT----
T ss_pred CCCCCHHHHHHHHHcCCcccCCcCCHHHHHHH-------------HHCCCCEEEEecchhc----CcHHHHHHHhc----
Confidence 3355677889999999999998 78888644 4689999987432210 01367887776
Q ss_pred ccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccC
Q 022296 146 AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKH 222 (299)
Q Consensus 146 v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~ 222 (299)
++|++... + +| + ++.+.+ ...|++|+..|.+=+. ++++
T Consensus 145 p~p~~~~~-p---tG--G-------------------------V~~~N~-------~~~l~ag~~~vg~Gs~-L~~~ 182 (196)
T PF01081_consen 145 PFPDLPFM-P---TG--G-------------------------VNPDNL-------AEYLKAGAVAVGGGSW-LFPK 182 (196)
T ss_dssp TTTT-EEE-E---BS--S---------------------------TTTH-------HHHHTSTTBSEEEESG-GGSH
T ss_pred cCCCCeEE-E---cC--C-------------------------CCHHHH-------HHHHhCCCEEEEECch-hcCH
Confidence 45554432 1 11 0 113344 8899999999987554 4444
No 406
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=60.32 E-value=94 Score=30.58 Aligned_cols=94 Identities=13% Similarity=0.137 Sum_probs=60.7
Q ss_pred ccEEEeeCccc--ccCChhHHHHHHHHHHhCCceecC--Cc--HHHHHHH----hCCc----------------hHHHHH
Q 022296 54 VDGLKFSGGSH--SLMPKPFIEEVVKRAHQHDVYVST--GD--WAEHLIR----NGPS----------------AFKEYV 107 (299)
Q Consensus 54 ID~lKfg~GTs--~l~p~~~l~eKI~l~~~~gV~v~~--Gt--lfE~a~~----qg~~----------------~~~~yl 107 (299)
++.+|+..+.. ...+.+.+++-++.++++|+.+.. -+ +.+.+.. +|.. .+...+
T Consensus 144 ~~~ik~~~~~~~~~~~s~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~ 223 (447)
T cd01314 144 ISSFKVFMAYKGLLMVDDEELLDVLKRAKELGALVMVHAENGDVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAI 223 (447)
T ss_pred CCEEEEEeccCCCCCCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChHHhhhcCCHHHHHHHHHHHH
Confidence 46678764332 334778899999999999987753 22 3332221 1311 122335
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 022296 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
+.++.+|...+ ..-++..+-.++|+.+++.|..+.-|+..
T Consensus 224 ~la~~~~~~~~-----~~H~s~~~~~~~i~~~k~~g~~v~~~~~p 263 (447)
T cd01314 224 RLAELAGAPLY-----IVHVSSKEAADEIARARKKGLPVYGETCP 263 (447)
T ss_pred HHHHHhCCCEE-----EEeCCCHHHHHHHHHHHHCCCeEEEecCc
Confidence 66778888776 55666777778999999999877556655
No 407
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=60.30 E-value=87 Score=29.15 Aligned_cols=86 Identities=15% Similarity=0.236 Sum_probs=59.3
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhC----------C--ceecCCcHHHHHHHhCCchHHHH
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH----------D--VYVSTGDWAEHLIRNGPSAFKEY 106 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~----------g--V~v~~GtlfE~a~~qg~~~~~~y 106 (299)
.....+.+|+...+ |+-.||.++..++.+++-.+.+-+. | ..+.+.||-| ..- ...++
T Consensus 85 s~e~~~~~l~~Ga~-----~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~Gw~~---~~~--~~~~~ 154 (243)
T TIGR01919 85 DDSSLRAALTGGRA-----RVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNRGWSD---GGG--DLEVL 154 (243)
T ss_pred CHHHHHHHHHcCCC-----EEEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEECCCeec---CCC--cHHHH
Confidence 55666668886555 5678999999999888776655211 1 1333456755 333 78999
Q ss_pred HHHHHHcCCCEEEec----CCcccCChhHHHH
Q 022296 107 VEDCKQVGFDTIELN----VGSLEIPEETLLR 134 (299)
Q Consensus 107 l~~~k~lGF~~IEIS----dGti~i~~~~r~~ 134 (299)
++++.++|+..|=+. ||+..=|+-+..+
T Consensus 155 ~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~ 186 (243)
T TIGR01919 155 ERLLDSGGCSRVVVTDSKKDGLSGGPNELLLE 186 (243)
T ss_pred HHHHHhCCCCEEEEEecCCcccCCCcCHHHHH
Confidence 999999999988764 6887766655433
No 408
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=60.27 E-value=98 Score=29.56 Aligned_cols=133 Identities=17% Similarity=0.222 Sum_probs=80.1
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHH----HHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccch
Q 022296 105 EYVEDCKQVGFDTIELNVGSLEIPEETLL----RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDK 180 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~----~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~ 180 (299)
+.++.|-+.||+.|=+..-.. |.++-. ++++.++..|..|--|+|.- |..+|. ++. .
T Consensus 88 e~i~~ai~~Gf~sVmid~s~l--~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~------gg~ed~----~~g-~------ 148 (282)
T TIGR01859 88 ESCIKAIKAGFSSVMIDGSHL--PFEENLALTKKVVEIAHAKGVSVEAELGTL------GGIEDG----VDE-K------ 148 (282)
T ss_pred HHHHHHHHcCCCEEEECCCCC--CHHHHHHHHHHHHHHHHHcCCEEEEeeCCC------cCcccc----ccc-c------
Confidence 466677788999999877665 444433 56666677788777777761 111220 000 0
Q ss_pred hcccCCCccchhhhhhhHHHHHHHHH-ccCcEEEEe-c--cccccCCCcccHHHHHHHHhccCCCceEEec-CCchhHHH
Q 022296 181 LFLASNPEIEVGVGINKSRRAERCLE-AGADMIMID-S--DDVCKHADSLRADIIAKVIGRLGLEKTMFEA-TNPRTSEW 255 (299)
Q Consensus 181 ~~~~~~~~~~~~~~~~~i~~~~~dLe-AGA~~VIiE-a--rgi~d~~G~~r~d~i~~ii~~l~~eklifEA-P~k~qQ~~ 255 (299)
..+..+ .++++++.+ .|+|++-+= | -|+|.....+.-+.+.+|.+.+++--++-=+ -.+..+.-
T Consensus 149 --~~~~t~---------~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~ 217 (282)
T TIGR01859 149 --EAELAD---------PDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIK 217 (282)
T ss_pred --ccccCC---------HHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHH
Confidence 001112 455588886 899998864 2 4899888899999999998877633233321 23333433
Q ss_pred HHHHhCC-Ccccc
Q 022296 256 FIRRYGP-KVNLF 267 (299)
Q Consensus 256 fI~~fG~-~VNLg 267 (299)
-+.+.|. .||++
T Consensus 218 ~~i~~Gi~kiNv~ 230 (282)
T TIGR01859 218 KAIKLGIAKINID 230 (282)
T ss_pred HHHHcCCCEEEEC
Confidence 3444453 46665
No 409
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=60.07 E-value=79 Score=27.44 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=18.3
Q ss_pred HHHHHHHHccCcEEEEeccccccCC
Q 022296 199 RRAERCLEAGADMIMIDSDDVCKHA 223 (299)
Q Consensus 199 ~~~~~dLeAGA~~VIiEargi~d~~ 223 (299)
++++..+++||+.|++= +.|++.+
T Consensus 170 ~~i~~~~~~Gad~vvvG-sai~~~~ 193 (202)
T cd04726 170 DTLPEFKKAGADIVIVG-RAITGAA 193 (202)
T ss_pred HHHHHHHhcCCCEEEEe-ehhcCCC
Confidence 44588999999998886 4588654
No 410
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=60.05 E-value=28 Score=37.43 Aligned_cols=63 Identities=19% Similarity=0.165 Sum_probs=46.7
Q ss_pred CChhHHHHHHHHHHhCCceec--CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCC
Q 022296 67 MPKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 144 (299)
Q Consensus 67 ~p~~~l~eKI~l~~~~gV~v~--~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~ 144 (299)
-+++..++.|+.+|++||.+. +|+--+.|.. .++++|++.+ .-.+.+++|.++|+..++.|-
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~-----------iA~~lGI~~v-----~a~~~PedK~~~v~~lq~~g~ 509 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAA-----------IAAEAGVDDF-----IAEATPEDKIALIRQEQAEGK 509 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHH-----------HHHHcCCCEE-----EcCCCHHHHHHHHHHHHHcCC
Confidence 345678899999999998544 5865554432 3678888754 347889999999999999875
Q ss_pred c
Q 022296 145 K 145 (299)
Q Consensus 145 ~ 145 (299)
.
T Consensus 510 ~ 510 (675)
T TIGR01497 510 L 510 (675)
T ss_pred e
Confidence 3
No 411
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=59.98 E-value=97 Score=28.66 Aligned_cols=71 Identities=18% Similarity=0.188 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC----cc-----cCChhHHHHHHHHHH
Q 022296 70 PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG----SL-----EIPEETLLRYVRLVK 140 (299)
Q Consensus 70 ~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdG----ti-----~i~~~~r~~lI~~~~ 140 (299)
+.+++..+..++.|+.++.- -| ..-++.++.+|+.|++.|-++-- +. .-+.+++.+.++.++
T Consensus 98 ~~~~~i~~~~~~~~i~~~~~--------~g-~~~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~ 168 (296)
T TIGR00433 98 EYVEAMVQIVEEMGLKTCAT--------LG-LLDPEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAK 168 (296)
T ss_pred HHHHHHHHHHHhCCCeEEec--------CC-CCCHHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHH
Confidence 36777777778888866421 11 11267889999999998544321 11 235678889999999
Q ss_pred HcCCcccce
Q 022296 141 SAGLKAKPK 149 (299)
Q Consensus 141 ~~G~~v~~E 149 (299)
+.|+.+.+-
T Consensus 169 ~~Gi~v~~~ 177 (296)
T TIGR00433 169 KAGLKVCSG 177 (296)
T ss_pred HcCCEEEEe
Confidence 999986654
No 412
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=59.94 E-value=36 Score=31.73 Aligned_cols=42 Identities=17% Similarity=0.152 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 022296 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (299)
....+.+...|||.|-|.-=--.++.++...+|+.++..|..
T Consensus 23 p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~ 64 (249)
T TIGR02311 23 PYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSS 64 (249)
T ss_pred cHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCC
Confidence 356777888999999887655557888888888877776653
No 413
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=59.94 E-value=23 Score=30.37 Aligned_cols=94 Identities=20% Similarity=0.326 Sum_probs=58.8
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecC-CcHHHHHHHhCCchHHHHHHHHHHcCC-C
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGF-D 116 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF-~ 116 (299)
|.+-+..+|+.+|- +.+=+|- -.| .++.++.|.+++..+-. -.+.= +.-..+++.++.+++.|. +
T Consensus 15 Gkniv~~~L~~~Gf--eVidLG~----~v~---~e~~v~aa~~~~adiVglS~L~t----~~~~~~~~~~~~l~~~gl~~ 81 (128)
T cd02072 15 GNKILDHAFTEAGF--NVVNLGV----LSP---QEEFIDAAIETDADAILVSSLYG----HGEIDCKGLREKCDEAGLKD 81 (128)
T ss_pred HHHHHHHHHHHCCC--EEEECCC----CCC---HHHHHHHHHHcCCCEEEEecccc----CCHHHHHHHHHHHHHCCCCC
Confidence 45666777776663 3444452 122 45666677777774422 11110 000135677788888998 6
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHcCCc
Q 022296 117 TIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (299)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (299)
..=+=-|.+.+|.+++.+-++++++.|+.
T Consensus 82 v~vivGG~~~i~~~d~~~~~~~L~~~Gv~ 110 (128)
T cd02072 82 ILLYVGGNLVVGKQDFEDVEKRFKEMGFD 110 (128)
T ss_pred CeEEEECCCCCChhhhHHHHHHHHHcCCC
Confidence 55556677888999998899999998775
No 414
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=59.57 E-value=51 Score=31.07 Aligned_cols=117 Identities=23% Similarity=0.343 Sum_probs=75.9
Q ss_pred HHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEE-
Q 022296 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIE- 119 (299)
Q Consensus 43 l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IE- 119 (299)
++|+=+.+-.=+|++=|- +|.---|...+.+.+...|.+|...+.- |+=|.. .|.++|||.|=
T Consensus 88 lkeVd~L~~~Ga~IIA~D-aT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l-------------~a~~~G~D~IGT 153 (229)
T COG3010 88 LKEVDALAEAGADIIAFD-ATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGL-------------NAHKLGFDIIGT 153 (229)
T ss_pred HHHHHHHHHCCCcEEEee-cccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHH-------------HHHHcCCcEEec
Confidence 344444444445555554 4555555446888888888888877653 444433 46689999983
Q ss_pred -ecC--CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhh
Q 022296 120 -LNV--GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGIN 196 (299)
Q Consensus 120 -ISd--Gti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (299)
+|- +.-.-|.+--..+++.+.+.|..|+-|=.. .+ +++
T Consensus 154 TLsGYT~~~~~~~~pDf~lvk~l~~~~~~vIAEGr~---~t---------------------------------P~~--- 194 (229)
T COG3010 154 TLSGYTGYTEKPTEPDFQLVKQLSDAGCRVIAEGRY---NT---------------------------------PEQ--- 194 (229)
T ss_pred ccccccCCCCCCCCCcHHHHHHHHhCCCeEEeeCCC---CC---------------------------------HHH---
Confidence 221 111345555568999999999988887554 11 333
Q ss_pred hHHHHHHHHHccCcEEEEec
Q 022296 197 KSRRAERCLEAGADMIMIDS 216 (299)
Q Consensus 197 ~i~~~~~dLeAGA~~VIiEa 216 (299)
+++.++.||+-|+|=+
T Consensus 195 ----Ak~a~~~Ga~aVvVGs 210 (229)
T COG3010 195 ----AKKAIEIGADAVVVGS 210 (229)
T ss_pred ----HHHHHHhCCeEEEECc
Confidence 4999999999999965
No 415
>PRK08227 autoinducer 2 aldolase; Validated
Probab=59.39 E-value=61 Score=30.97 Aligned_cols=146 Identities=15% Similarity=0.198 Sum_probs=81.3
Q ss_pred EEEeeCcccccCCh--h----HHHHHHHH-HHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC
Q 022296 56 GLKFSGGSHSLMPK--P----FIEEVVKR-AHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP 128 (299)
Q Consensus 56 ~lKfg~GTs~l~p~--~----~l~eKI~l-~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~ 128 (299)
++|+..+|+..-++ . .+++-+++ |-.-++.+|+|.=.|.--.+ .+-+-.++|+++|+..+-+.-=-=.++
T Consensus 78 il~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~---~l~~v~~ea~~~G~Plla~~prG~~~~ 154 (264)
T PRK08227 78 VLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFIGSEYEHQSIK---NIIQLVDAGLRYGMPVMAVTAVGKDMV 154 (264)
T ss_pred EEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHH---HHHHHHHHHHHhCCcEEEEecCCCCcC
Confidence 47888777665221 1 14444444 33334588899877766555 578888999999999887542221233
Q ss_pred hhHHHHHHHHHHHcCCcccceee---eecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHH
Q 022296 129 EETLLRYVRLVKSAGLKAKPKFA---VMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCL 205 (299)
Q Consensus 129 ~~~r~~lI~~~~~~G~~v~~E~g---vK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dL 205 (299)
.+.. +|..+...|. |+| +|-+.. + ..|...+...+ --+-.||-...+.+++ ++.++..+
T Consensus 155 ~~~~--~ia~aaRiaa----ELGADiVK~~y~----~--~~f~~vv~a~~---vPVviaGG~k~~~~~~---L~~v~~ai 216 (264)
T PRK08227 155 RDAR--YFSLATRIAA----EMGAQIIKTYYV----E--EGFERITAGCP---VPIVIAGGKKLPERDA---LEMCYQAI 216 (264)
T ss_pred chHH--HHHHHHHHHH----HHcCCEEecCCC----H--HHHHHHHHcCC---CcEEEeCCCCCCHHHH---HHHHHHHH
Confidence 2222 5555544322 344 332221 0 11222222111 0111222222245667 89999999
Q ss_pred HccCcEEEEeccccccCC
Q 022296 206 EAGADMIMIDSDDVCKHA 223 (299)
Q Consensus 206 eAGA~~VIiEargi~d~~ 223 (299)
++||.=|.+ +|.||...
T Consensus 217 ~aGa~Gv~~-GRNIfQ~~ 233 (264)
T PRK08227 217 DEGASGVDM-GRNIFQSE 233 (264)
T ss_pred HcCCceeee-chhhhccC
Confidence 999988877 78888874
No 416
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=59.36 E-value=43 Score=30.50 Aligned_cols=84 Identities=18% Similarity=0.118 Sum_probs=53.0
Q ss_pred ChhHHHHHHHHHHhCCceecC---CcH--H------HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc--cC-Ch----
Q 022296 68 PKPFIEEVVKRAHQHDVYVST---GDW--A------EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--EI-PE---- 129 (299)
Q Consensus 68 p~~~l~eKI~l~~~~gV~v~~---Gtl--f------E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti--~i-~~---- 129 (299)
+.+.+++.-+.++++||.++. ++. + +....+.-..+++.++.|+.||.++|=+..+.. .- +.
T Consensus 50 ~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~ 129 (284)
T PRK13210 50 SKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQ 129 (284)
T ss_pred CHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHH
Confidence 345588888999999997652 210 1 111111112588999999999999998753321 11 11
Q ss_pred ---hHHHHHHHHHHHcCCcccceee
Q 022296 130 ---ETLLRYVRLVKSAGLKAKPKFA 151 (299)
Q Consensus 130 ---~~r~~lI~~~~~~G~~v~~E~g 151 (299)
+...++.+.+++.|.++.-|..
T Consensus 130 ~~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 130 RFIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEec
Confidence 2245577788888988776663
No 417
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=58.92 E-value=28 Score=35.06 Aligned_cols=95 Identities=6% Similarity=0.041 Sum_probs=62.1
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHH-HHHHHHcCCC
Q 022296 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEY-VEDCKQVGFD 116 (299)
Q Consensus 39 g~~~l~DlLe~ag~y-ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~y-l~~~k~lGF~ 116 (299)
.......+++..+++ ++++|.|+--..-+..+.+++.-+...+ ..+.. ... ..+ ...| .+.+.+.|.|
T Consensus 183 ~~~~A~~i~~~l~~~~~~~iKvG~~L~~~~G~~iVk~Lr~~~~~--~~I~~----DLK-~~D---i~~~vv~~~a~aGAD 252 (391)
T PRK13307 183 DLEEVERVLSQLPKSDHIIIEAGTPLIKKFGLEVISKIREVRPD--AFIVA----DLK-TLD---TGNLEARMAADATAD 252 (391)
T ss_pred CHHHHHHHHHhcccccceEEEECHHHHHHhCHHHHHHHHHhCCC--CeEEE----Eec-ccC---hhhHHHHHHHhcCCC
Confidence 567888899999999 9999999877776666656555443211 11111 011 111 2234 6677888999
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHcCCcc
Q 022296 117 TIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (299)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~G~~v 146 (299)
.+-|.-- -+.+.-.+.++.+++.|.++
T Consensus 253 ~vTVH~e---a~~~ti~~ai~~akk~Gikv 279 (391)
T PRK13307 253 AVVISGL---APISTIEKAIHEAQKTGIYS 279 (391)
T ss_pred EEEEecc---CCHHHHHHHHHHHHHcCCEE
Confidence 9988853 24556677888888888653
No 418
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=58.87 E-value=38 Score=33.76 Aligned_cols=53 Identities=25% Similarity=0.373 Sum_probs=42.1
Q ss_pred HHHHHHHHHccCcEEEEecc-----ccccCCCcccHHHHHHHHhccC-CCceEEecCCc
Q 022296 198 SRRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRLG-LEKTMFEATNP 250 (299)
Q Consensus 198 i~~~~~dLeAGA~~VIiEar-----gi~d~~G~~r~d~i~~ii~~l~-~eklifEAP~k 250 (299)
...+...+.+||+-+|||-- -++|..-.+..+.++++++.+- +++.+=..|+|
T Consensus 289 ~~~a~AAva~GAdGliIE~H~~pd~AlsD~~qsl~p~~~~~l~~~i~~i~~~~g~~~~~ 347 (352)
T PRK13396 289 PSMAMAAIAAGTDSLMIEVHPNPAKALSDGPQSLTPDRFDRLMQELAVIGKTVGRWPQP 347 (352)
T ss_pred HHHHHHHHhhCCCeEEEEecCCcccCCChhhhcCCHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 34468899999999999983 6889999999999999997765 55555555655
No 419
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=58.80 E-value=1.6e+02 Score=28.39 Aligned_cols=194 Identities=13% Similarity=0.185 Sum_probs=116.8
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceec----CCc--H----------HHHHHHhC----C-
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGD--W----------AEHLIRNG----P- 100 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~----~Gt--l----------fE~a~~qg----~- 100 (299)
.+.++|..|-+. +++-|.+-+++-+.++.-|+-|.+.+.++. +|+ + +..+..+- |
T Consensus 5 ~~~~lL~~A~~~----~yAV~AfN~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV 80 (285)
T PRK07709 5 SMKEMLNKALEG----KYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPV 80 (285)
T ss_pred cHHHHHHHHHHC----CceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcE
Confidence 566777666543 567888888888888888888888776442 331 1 11111111 0
Q ss_pred ------chHHHHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 022296 101 ------SAFKEYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 172 (299)
Q Consensus 101 ------~~~~~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~ 172 (299)
..=-+.+..|-++||+.|=+..-..++.+-- =.++++.++..|.-|--|+|.= |..+|...
T Consensus 81 ~lHLDHg~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~i------gg~ed~~~----- 149 (285)
T PRK07709 81 AIHLDHGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTV------GGQEDDVI----- 149 (285)
T ss_pred EEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecc------CCccCCcc-----
Confidence 0112566788899999999976554443322 2367788888999999999983 11122100
Q ss_pred CCCCccchhcccCCCccchhhhhhhHHHHHHHHH-ccCcEEEEec---cccccCCCcccHHHHHHHHhccCCCceEEecC
Q 022296 173 RAPRSTDKLFLASNPEIEVGVGINKSRRAERCLE-AGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 248 (299)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLe-AGA~~VIiEa---rgi~d~~G~~r~d~i~~ii~~l~~eklifEAP 248 (299)
-. ...+| +|++. +++.+ -|+|.+-+== -|+|...-+++.+.+++|-+.++.-=++==+.
T Consensus 150 ~~--~~~yT--------~peeA-------~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~iPLVLHGgS 212 (285)
T PRK07709 150 AE--GVIYA--------DPAEC-------KHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGT 212 (285)
T ss_pred cc--cccCC--------CHHHH-------HHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHCCCEEEeCCC
Confidence 00 01111 24444 77775 5999876632 28999888999999999988776332333222
Q ss_pred -CchhHHHHHHHhC-CCcccc
Q 022296 249 -NPRTSEWFIRRYG-PKVNLF 267 (299)
Q Consensus 249 -~k~qQ~~fI~~fG-~~VNLg 267 (299)
.|..|.--.-++| .+||.+
T Consensus 213 G~~~e~~~~ai~~Gi~KiNi~ 233 (285)
T PRK07709 213 GIPTADIEKAISLGTSKINVN 233 (285)
T ss_pred CCCHHHHHHHHHcCCeEEEeC
Confidence 3444443333444 467765
No 420
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=58.78 E-value=1e+02 Score=27.26 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=31.2
Q ss_pred HHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecCCc
Q 022296 198 SRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 250 (299)
Q Consensus 198 i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP~k 250 (299)
.+++.+.++.|++.-+-.+ ++. -+...+.+++..++.+|++||...|
T Consensus 157 ~~~~~~~~~~g~~~~~~~~--~~~----~~~~~~~~~i~~~~~dril~~TD~p 203 (252)
T TIGR00010 157 AELAKKLLDLGFYISISGI--VTF----KNAKSLREVVRKIPLERLLVETDSP 203 (252)
T ss_pred HHHHHHHHHCCCeEeecee--Eec----CCcHHHHHHHHhCCHHHeEecccCC
Confidence 3445677777877665532 111 1234577788889999999999875
No 421
>PRK09234 fbiC FO synthase; Reviewed
Probab=58.74 E-value=52 Score=36.36 Aligned_cols=105 Identities=19% Similarity=0.303 Sum_probs=64.7
Q ss_pred HHHHHHhhccccc----EEEeeCcccccCChhHHHHHHHHHHhC--CceecCCcHHHHHH---HhCCchHHHHHHHHHHc
Q 022296 43 LEDIFESMGQFVD----GLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLI---RNGPSAFKEYVEDCKQV 113 (299)
Q Consensus 43 l~DlLe~ag~yID----~lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~GtlfE~a~---~qg~~~~~~yl~~~k~l 113 (299)
.+++++.+-+..+ =+-+-.|...-++.+.+.+.++..|+. +|.+..=+-.|+.+ .-| -..++|++.+|+.
T Consensus 559 ~eeI~~~a~ea~~~G~tev~i~gG~~p~~~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~G-l~~~e~l~~LkeA 637 (843)
T PRK09234 559 LDEVADRAWEAWVAGATEVCMQGGIHPELPGTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLG-LSIREWLTALREA 637 (843)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCCCCCcCHHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcC-CCHHHHHHHHHHh
Confidence 4445554443322 234435655545566666777777765 46665445555552 222 2578999999999
Q ss_pred CCCEE-----EecCCc-------ccCChhHHHHHHHHHHHcCCcccc
Q 022296 114 GFDTI-----ELNVGS-------LEIPEETLLRYVRLVKSAGLKAKP 148 (299)
Q Consensus 114 GF~~I-----EISdGt-------i~i~~~~r~~lI~~~~~~G~~v~~ 148 (299)
|.+.+ ||-+-- -.++.++|++.|+.+++.|+++-+
T Consensus 638 GLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~lGi~~~s 684 (843)
T PRK09234 638 GLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGLRSSS 684 (843)
T ss_pred CcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCccc
Confidence 99887 222220 135778899999999998888766
No 422
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=58.61 E-value=1.1e+02 Score=27.44 Aligned_cols=102 Identities=17% Similarity=0.230 Sum_probs=49.8
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceec---------CCcHHHHH
Q 022296 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS---------TGDWAEHL 95 (299)
Q Consensus 25 GlT~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~---------~GtlfE~a 95 (299)
++...++=|. + ....++.+++...+.| =.||.++-+++.+++..+-+....|.++ +-+|-|..
T Consensus 72 ~~pi~~ggGI--~-~~ed~~~~~~~Ga~~v-----vlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~ 143 (230)
T TIGR00007 72 GVPVQVGGGI--R-SLEDVEKLLDLGVDRV-----IIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKS 143 (230)
T ss_pred CCCEEEeCCc--C-CHHHHHHHHHcCCCEE-----EEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccC
Confidence 3444444443 2 4455555666444433 3577777666655555444432224332 11232221
Q ss_pred HHhCCchHHHHHHHHHHcCCCEEEec----CCcccCChhHHHHHHHHHHH
Q 022296 96 IRNGPSAFKEYVEDCKQVGFDTIELN----VGSLEIPEETLLRYVRLVKS 141 (299)
Q Consensus 96 ~~qg~~~~~~yl~~~k~lGF~~IEIS----dGti~i~~~~r~~lI~~~~~ 141 (299)
+....+..+.+.+.|++.+=+- +|+.. .. -.++++.+++
T Consensus 144 ----~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~-g~--~~~~i~~i~~ 186 (230)
T TIGR00007 144 ----EVSLEELAKRLEELGLEGIIYTDISRDGTLS-GP--NFELTKELVK 186 (230)
T ss_pred ----CCCHHHHHHHHHhCCCCEEEEEeecCCCCcC-CC--CHHHHHHHHH
Confidence 1244567777778888865532 23322 11 2456666665
No 423
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=58.60 E-value=13 Score=30.51 Aligned_cols=41 Identities=17% Similarity=0.345 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccc
Q 022296 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (299)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~ 147 (299)
+...+.+++|.++|...|=+-.| ..-.++++.++++|+++.
T Consensus 66 ~~~~~~v~~~~~~g~~~v~~~~g------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 66 DKVPEIVDEAAALGVKAVWLQPG------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-TT------S--HHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEcc------hHHHHHHHHHHHcCCEEE
Confidence 47899999999999999999988 445689999999999875
No 424
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=58.58 E-value=36 Score=29.03 Aligned_cols=95 Identities=17% Similarity=0.236 Sum_probs=62.6
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCcee-cCCcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV-STGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v-~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (299)
|...+.-+|+.+|--+=+ +|- =.| ..+.++.+.++++.+ ..-...- +....+.+.++.+++.|+..
T Consensus 19 G~~iv~~~lr~~G~eVi~--LG~----~vp---~e~i~~~a~~~~~d~V~lS~~~~----~~~~~~~~~~~~L~~~~~~~ 85 (137)
T PRK02261 19 GNKILDRALTEAGFEVIN--LGV----MTS---QEEFIDAAIETDADAILVSSLYG----HGEIDCRGLREKCIEAGLGD 85 (137)
T ss_pred HHHHHHHHHHHCCCEEEE--CCC----CCC---HHHHHHHHHHcCCCEEEEcCccc----cCHHHHHHHHHHHHhcCCCC
Confidence 566788888888865433 342 123 556777777877733 2221111 11125677889999998854
Q ss_pred EE-ecCCcccCChhHHHHHHHHHHHcCCcc
Q 022296 118 IE-LNVGSLEIPEETLLRYVRLVKSAGLKA 146 (299)
Q Consensus 118 IE-ISdGti~i~~~~r~~lI~~~~~~G~~v 146 (299)
+- +=-|.+..+..++...++++++.||.+
T Consensus 86 ~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~ 115 (137)
T PRK02261 86 ILLYVGGNLVVGKHDFEEVEKKFKEMGFDR 115 (137)
T ss_pred CeEEEECCCCCCccChHHHHHHHHHcCCCE
Confidence 43 456778889999999999999988763
No 425
>PLN02389 biotin synthase
Probab=58.57 E-value=59 Score=32.39 Aligned_cols=70 Identities=21% Similarity=0.194 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHHHHHH
Q 022296 70 PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYVRLVK 140 (299)
Q Consensus 70 ~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti---------~i~~~~r~~lI~~~~ 140 (299)
+.+.+.++.+++.++.++ ..-| -.-++-++..|+.|++.+-++--|. .-+-++|++.|+.++
T Consensus 153 e~i~eiir~ik~~~l~i~--------~s~G-~l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~ 223 (379)
T PLN02389 153 NQILEYVKEIRGMGMEVC--------CTLG-MLEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVR 223 (379)
T ss_pred HHHHHHHHHHhcCCcEEE--------ECCC-CCCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHH
Confidence 467777777777777665 2222 1345667778888888876654421 246678888999999
Q ss_pred HcCCcccc
Q 022296 141 SAGLKAKP 148 (299)
Q Consensus 141 ~~G~~v~~ 148 (299)
+.|+++.+
T Consensus 224 ~~Gi~v~s 231 (379)
T PLN02389 224 EAGISVCS 231 (379)
T ss_pred HcCCeEeE
Confidence 98887644
No 426
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=58.28 E-value=52 Score=31.22 Aligned_cols=94 Identities=13% Similarity=0.153 Sum_probs=66.4
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhH---HHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHH-HcCCC
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPF---IEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCK-QVGFD 116 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~---l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k-~lGF~ 116 (299)
+...+++..++|+..+|+|+.-..-+..+. |++.++.+|++|.+|..- =+..+- +.+..|.+..- .+|+|
T Consensus 42 f~~~ii~~l~~~v~~vK~g~~lf~~~G~~gi~~l~~~~~~~~~~g~~VilD~K~~DIp-----nTv~~~a~a~~~~~g~D 116 (261)
T TIGR02127 42 FCLRIIDATAEYAAVVKPQVAFFERFGSEGFKALEEVIAHARSLGLPVLADVKRGDIG-----STASAYAKAWLGHLHAD 116 (261)
T ss_pred HHHHHHHhcCCcceEEecCHHHHHhcCHHHHHHHHHHHHHHHHCCCeEEEEeeccChH-----HHHHHHHHHHHhhcCCC
Confidence 457899999999999999997766665544 567779999999877653 233332 24456666555 78999
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHcC
Q 022296 117 TIELNVGSLEIPEETLLRYVRLVKSAG 143 (299)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~G 143 (299)
+|-|+- -+..+....+++.+.+.|
T Consensus 117 ~vTvh~---~~G~d~l~~~~~~~~~~~ 140 (261)
T TIGR02127 117 ALTVSP---YLGLDSLRPFLEYARANG 140 (261)
T ss_pred EEEECC---cCCHHHHHHHHHHHhhcC
Confidence 999884 555666666776666544
No 427
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=58.20 E-value=4.9 Score=34.05 Aligned_cols=98 Identities=13% Similarity=0.124 Sum_probs=58.5
Q ss_pred ccEEEeeCcccccCC--hhHHHHHHHHHHhCCceecCC---c-HHHHH---------HHhCCchHHHHHHHHHHcCCCEE
Q 022296 54 VDGLKFSGGSHSLMP--KPFIEEVVKRAHQHDVYVSTG---D-WAEHL---------IRNGPSAFKEYVEDCKQVGFDTI 118 (299)
Q Consensus 54 ID~lKfg~GTs~l~p--~~~l~eKI~l~~~~gV~v~~G---t-lfE~a---------~~qg~~~~~~yl~~~k~lGF~~I 118 (299)
.|.+-+......... .+.+++-.++++++||.+..- + +...- -.+.-+.+++.++.|+.+|.+.|
T Consensus 9 ~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i 88 (213)
T PF01261_consen 9 FDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYI 88 (213)
T ss_dssp HSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEE
T ss_pred CCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCce
Confidence 455555544433333 246889999999999984431 1 11100 00001268999999999999999
Q ss_pred EecCC----cccCChh--------HHHHHHHHHHHcCCcccceee
Q 022296 119 ELNVG----SLEIPEE--------TLLRYVRLVKSAGLKAKPKFA 151 (299)
Q Consensus 119 EISdG----ti~i~~~--------~r~~lI~~~~~~G~~v~~E~g 151 (299)
=+.-| ....+.+ ...++.+.+++.|+++.-|-.
T Consensus 89 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~ 133 (213)
T PF01261_consen 89 VVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENH 133 (213)
T ss_dssp EEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-S
T ss_pred eecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecc
Confidence 99977 2222222 334566667777777555543
No 428
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=58.19 E-value=14 Score=36.62 Aligned_cols=152 Identities=21% Similarity=0.301 Sum_probs=80.7
Q ss_pred CCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChh-------HHHHHHHHHHHcCCcccceeeee
Q 022296 82 HDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEE-------TLLRYVRLVKSAGLKAKPKFAVM 153 (299)
Q Consensus 82 ~gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~-------~r~~lI~~~~~~G~~v~~E~gvK 153 (299)
.||-|||| ..+| ...+|++.++++||+.|=.| +-+|++ ...++++.+++.||++...+..+
T Consensus 2 lGiSvY~~~~~~~--------~~~~yi~~a~~~Gf~~iFTS---L~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 2 LGISVYPGQSSFE--------ENKAYIEKAAKYGFKRIFTS---LHIPEDDPEDYLERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp EEEEE-CCCS-HH--------HHHHHHHHHHCTTEEEEEEE---E---------HHHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred cEEEEeCCCCCHH--------HHHHHHHHHHHCCCCEEECC---CCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 36677777 4333 45789999999998888776 444443 34477888888888877766552
Q ss_pred cCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEecc------------c--c
Q 022296 154 FNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSD------------D--V 219 (299)
Q Consensus 154 ~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEar------------g--i 219 (299)
.- ...| ++.+.+ +..-+.|.+.+=++-- | |
T Consensus 71 ~l-~~lg----------------------------~~~~dl-------~~~~~lGi~~lRlD~Gf~~~~ia~ls~ng~~I 114 (357)
T PF05913_consen 71 VL-KKLG----------------------------ISYDDL-------SFFKELGIDGLRLDYGFSGEEIAKLSKNGIKI 114 (357)
T ss_dssp HH-HTTT-----------------------------BTTBT-------HHHHHHT-SEEEESSS-SCHHHHHHTTT-SEE
T ss_pred HH-HHcC----------------------------CCHHHH-------HHHHHcCCCEEEECCCCCHHHHHHHHhCCCEE
Confidence 11 0111 112223 4455678877777652 1 2
Q ss_pred ccCCCcccHHHHHHHHhc-cCCCceEEe---cCCch---------hHHHHHHHhCCCcccccCCCC---------chhhh
Q 022296 220 CKHADSLRADIIAKVIGR-LGLEKTMFE---ATNPR---------TSEWFIRRYGPKVNLFVDHSQ---------VMDLE 277 (299)
Q Consensus 220 ~d~~G~~r~d~i~~ii~~-l~~eklifE---AP~k~---------qQ~~fI~~fG~~VNLgI~~~e---------Vi~LE 277 (299)
.=+.-.+.++.++.+++. ...++|+-= =|+|. +|..+++++|-+|=-||+-+. +.-||
T Consensus 115 ~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~TGLs~~~f~~~n~~~k~~gi~~~AFI~g~~~~rGPl~~GLPTlE 194 (357)
T PF05913_consen 115 ELNASTITEEELDELIKYGANFSNIIACHNFYPRPYTGLSEEFFIEKNQLLKEYGIKTAAFIPGDENKRGPLYEGLPTLE 194 (357)
T ss_dssp EEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-SB-HHHHHHHHHHHHHTT-EEEEEE--SSS-BTTT-S--BSBG
T ss_pred EEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCCCCCHHHHHHHHHHHHHCCCcEEEEecCCCcccCCccCCCCccH
Confidence 223345566778878753 336664311 04443 488889999977666677653 44566
Q ss_pred hhh
Q 022296 278 CLR 280 (299)
Q Consensus 278 ~LR 280 (299)
.-|
T Consensus 195 ~hR 197 (357)
T PF05913_consen 195 KHR 197 (357)
T ss_dssp GGT
T ss_pred HHc
Confidence 666
No 429
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=58.13 E-value=56 Score=35.22 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=18.4
Q ss_pred hhhhhhhHHHHHHHHHccCcEEEEec
Q 022296 191 VGVGINKSRRAERCLEAGADMIMIDS 216 (299)
Q Consensus 191 ~~~~~~~i~~~~~dLeAGA~~VIiEa 216 (299)
.++. ++.++..-++|+|+|-|=+
T Consensus 637 ~~~~---~~~~~~l~~~g~d~i~vs~ 659 (765)
T PRK08255 637 PDDA---VEIARAFKAAGADLIDVSS 659 (765)
T ss_pred HHHH---HHHHHHHHhcCCcEEEeCC
Confidence 5667 7888888889999998843
No 430
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=58.12 E-value=1.6e+02 Score=29.43 Aligned_cols=106 Identities=17% Similarity=0.177 Sum_probs=68.0
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcc
Q 022296 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFL 183 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~ 183 (299)
.+..+.+.+++++. +.++.-.++|+.+++.+ +.+|-..+
T Consensus 102 a~aa~~~~e~~~~~---------~~p~l~~~ii~~vr~a~------VtvkiRl~-------------------------- 140 (369)
T TIGR01304 102 AAATRLLQELHAAP---------LKPELLGERIAEVRDSG------VITAVRVS-------------------------- 140 (369)
T ss_pred HHHHHHHHHcCCCc---------cChHHHHHHHHHHHhcc------eEEEEecC--------------------------
Confidence 46777778888887 46777788999999986 34432211
Q ss_pred cCCCccchhhhhhhHHHHHHHHHccCcEEEEecccc---c-cCCCcccHHHHHHHHhccCCCceEE-ecCCchhHHHHHH
Q 022296 184 ASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDV---C-KHADSLRADIIAKVIGRLGLEKTMF-EATNPRTSEWFIR 258 (299)
Q Consensus 184 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi---~-d~~G~~r~d~i~~ii~~l~~eklif-EAP~k~qQ~~fI~ 258 (299)
+... .+.++..++|||+.|.+-+|=+ | ...++ ...+.+++..++.- +|. -....+.=..+++
T Consensus 141 -------~~~~---~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~--p~~l~~~i~~~~IP-VI~G~V~t~e~A~~~~~ 207 (369)
T TIGR01304 141 -------PQNA---REIAPIVVKAGADLLVIQGTLVSAEHVSTSGE--PLNLKEFIGELDVP-VIAGGVNDYTTALHLMR 207 (369)
T ss_pred -------CcCH---HHHHHHHHHCCCCEEEEeccchhhhccCCCCC--HHHHHHHHHHCCCC-EEEeCCCCHHHHHHHHH
Confidence 1112 5667888999999999998721 2 23344 55677788877753 443 3344444444554
Q ss_pred HhCCCc
Q 022296 259 RYGPKV 264 (299)
Q Consensus 259 ~fG~~V 264 (299)
.|.+.
T Consensus 208 -aGaDg 212 (369)
T TIGR01304 208 -TGAAG 212 (369)
T ss_pred -cCCCE
Confidence 78887
No 431
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=58.12 E-value=19 Score=35.85 Aligned_cols=108 Identities=17% Similarity=0.324 Sum_probs=0.0
Q ss_pred EEeeCcccccCChhHH----------------HHHHHHHHhCCceecC--CcHH---------------------HHHHH
Q 022296 57 LKFSGGSHSLMPKPFI----------------EEVVKRAHQHDVYVST--GDWA---------------------EHLIR 97 (299)
Q Consensus 57 lKfg~GTs~l~p~~~l----------------~eKI~l~~~~gV~v~~--Gtlf---------------------E~a~~ 97 (299)
++.|| ||..++-..| ++-+++||.+||.|-. |..- +..++
T Consensus 95 i~~Gf-tSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~~T 173 (347)
T PRK09196 95 IQLGF-TSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQLLT 173 (347)
T ss_pred HHcCC-CEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccccccccccCcccccccchhhcCC
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcc------cCChh---HHHHHHHHHHHcCCcccceee----eecCCCCCC----
Q 022296 98 NGPSAFKEYVEDCKQVGFDTIELNVGSL------EIPEE---TLLRYVRLVKSAGLKAKPKFA----VMFNKSDIP---- 160 (299)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti------~i~~~---~r~~lI~~~~~~G~~v~~E~g----vK~~~sevg---- 160 (299)
.- ++-.+.+++.|.|++=||-||. ...+. -....++.+++ .+. |.++.|.++
T Consensus 174 ~P----eeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~-------~v~~vPLVLHGgSG~~~~~~ 242 (347)
T PRK09196 174 DP----EEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHA-------RLPNTHLVMHGSSSVPQELL 242 (347)
T ss_pred CH----HHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHh-------cCCCCCEEEeCCCCCCHHHH
Q ss_pred ----------------CcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEE
Q 022296 161 ----------------SDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMI 212 (299)
Q Consensus 161 ----------------~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~V 212 (299)
+ -++++++++.|..+|
T Consensus 243 ~~~~~~g~~~~~~~G~~------------------------------------~e~i~~ai~~GI~KI 274 (347)
T PRK09196 243 DIINEYGGDMPETYGVP------------------------------------VEEIQEGIKHGVRKV 274 (347)
T ss_pred HHHHHhcCCccccCCCC------------------------------------HHHHHHHHHCCCceE
No 432
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=58.06 E-value=80 Score=31.29 Aligned_cols=21 Identities=14% Similarity=0.085 Sum_probs=16.1
Q ss_pred hhhhhhhHHHHHHHHHccCcEEEE
Q 022296 191 VGVGINKSRRAERCLEAGADMIMI 214 (299)
Q Consensus 191 ~~~~~~~i~~~~~dLeAGA~~VIi 214 (299)
++++ ++.++...++|+|+|=+
T Consensus 234 ~~e~---~~~~~~l~~~gvd~i~v 254 (361)
T cd04747 234 PDEL---EALLAPLVDAGVDIFHC 254 (361)
T ss_pred HHHH---HHHHHHHHHcCCCEEEe
Confidence 5677 77778778899999644
No 433
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=58.00 E-value=15 Score=33.48 Aligned_cols=139 Identities=18% Similarity=0.102 Sum_probs=76.3
Q ss_pred hHHHHHHHhhcccccEEEee----CcccccCChhHHHHHHHHHHhCCceecC-CcHHHHHHHh--CCchHHHHHHHHHHc
Q 022296 41 NVLEDIFESMGQFVDGLKFS----GGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRN--GPSAFKEYVEDCKQV 113 (299)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg----~GTs~l~p~~~l~eKI~l~~~~gV~v~~-GtlfE~a~~q--g~~~~~~yl~~~k~l 113 (299)
.+.++.++.-++=||++=.= -|- .-.-.+.+++-++.||++|+++-. +-+-.-.+.. .++.+....+.|.++
T Consensus 80 ~~ve~A~~~GAd~vd~vi~~~~~~~~~-~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~ 158 (236)
T PF01791_consen 80 AEVEEAIRLGADEVDVVINYGALGSGN-EDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAEL 158 (236)
T ss_dssp HHHHHHHHTT-SEEEEEEEHHHHHTTH-HHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCceeeeecccccccccc-HHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHh
Confidence 46777777777666665221 111 111124688889999999997654 2111111000 122467778888999
Q ss_pred CCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhh
Q 022296 114 GFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGV 193 (299)
Q Consensus 114 GF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (299)
|-|.|-.|.|.-.=...+-.++++++.+. ..+--.+++|...- + + .+.
T Consensus 159 GaD~vKt~tg~~~~~t~~~~~~~~~~~~~-~~~p~~~~Vk~sGG---i--~--------------------------~~~ 206 (236)
T PF01791_consen 159 GADFVKTSTGKPVGATPEDVELMRKAVEA-APVPGKVGVKASGG---I--D--------------------------AED 206 (236)
T ss_dssp T-SEEEEE-SSSSCSHHHHHHHHHHHHHT-HSSTTTSEEEEESS---S--S--------------------------HHH
T ss_pred CCCEEEecCCccccccHHHHHHHHHHHHh-cCCCcceEEEEeCC---C--C--------------------------hHH
Confidence 99999999994333333444556655551 11112455663321 1 0 122
Q ss_pred hhhhHHHHHHHHHccCcEE
Q 022296 194 GINKSRRAERCLEAGADMI 212 (299)
Q Consensus 194 ~~~~i~~~~~dLeAGA~~V 212 (299)
+.+.++++...++|||+.+
T Consensus 207 ~~~~l~~a~~~i~aGa~~~ 225 (236)
T PF01791_consen 207 FLRTLEDALEFIEAGADRI 225 (236)
T ss_dssp HHHSHHHHHHHHHTTHSEE
T ss_pred HHHHHHHHHHHHHcCChhH
Confidence 2233888899999999763
No 434
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=57.61 E-value=20 Score=39.19 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCCEEEecCCcc--------------------cCChhHHHHHHHHHHHcCCcccceeee
Q 022296 104 KEYVEDCKQVGFDTIELNVGSL--------------------EIPEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti--------------------~i~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
++-+.++|+|||++|+++-=+- -=++++..++|+.+.++|++|+-.+-.
T Consensus 254 ~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 254 DDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4458899999999999874211 013578899999999999999888755
No 435
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=57.54 E-value=48 Score=29.88 Aligned_cols=78 Identities=15% Similarity=0.133 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhCCceecC-----CcHHH-----------HHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--CChhH-
Q 022296 71 FIEEVVKRAHQHDVYVST-----GDWAE-----------HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--IPEET- 131 (299)
Q Consensus 71 ~l~eKI~l~~~~gV~v~~-----GtlfE-----------~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~--i~~~~- 131 (299)
.+.+.-++++++|+.++. +.|.. ..-.. +.+++.++.|+++|.+.|-+-.|... .+.++
T Consensus 40 ~~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~ 117 (254)
T TIGR03234 40 DAEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFR--EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEA 117 (254)
T ss_pred CHHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHH--HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHH
Confidence 477778899999997663 22310 00011 26788999999999999998888653 22222
Q ss_pred -------HHHHHHHHHHcCCccccee
Q 022296 132 -------LLRYVRLVKSAGLKAKPKF 150 (299)
Q Consensus 132 -------r~~lI~~~~~~G~~v~~E~ 150 (299)
..++.+.|++.|.++.-|.
T Consensus 118 ~~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 118 RATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3455667777787765553
No 436
>PRK09248 putative hydrolase; Validated
Probab=57.18 E-value=24 Score=32.28 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=7.9
Q ss_pred HHHHHHHHHHcCCCEE
Q 022296 103 FKEYVEDCKQVGFDTI 118 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~I 118 (299)
+++-++.+++.||+.+
T Consensus 203 ~~~~~~~~~~~g~~~~ 218 (246)
T PRK09248 203 FEEALKILDEVGFPEE 218 (246)
T ss_pred HHHHHHHHHHcCCCHH
Confidence 4444555555555544
No 437
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=57.11 E-value=1.3e+02 Score=27.62 Aligned_cols=123 Identities=23% Similarity=0.272 Sum_probs=69.1
Q ss_pred HHHHHcCCCEEEe----cCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcc
Q 022296 108 EDCKQVGFDTIEL----NVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFL 183 (299)
Q Consensus 108 ~~~k~lGF~~IEI----SdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~ 183 (299)
..+.+.|-|.||+ +.|=++=|.. +|+.+++ .+.-.+.+. .. |..+| | + ++
T Consensus 14 ~~A~~~GAdRiELc~~l~~GGlTPS~g----~i~~~~~---~~~ipv~vM--IR--pr~gd--F---~----Ys------ 67 (201)
T PF03932_consen 14 LAAEAGGADRIELCSNLEVGGLTPSLG----LIRQARE---AVDIPVHVM--IR--PRGGD--F---V----YS------ 67 (201)
T ss_dssp HHHHHTT-SEEEEEBTGGGT-B---HH----HHHHHHH---HTTSEEEEE------SSSS---S----------------
T ss_pred HHHHHcCCCEEEECCCccCCCcCcCHH----HHHHHHh---hcCCceEEE--EC--CCCCC--c---c----CC------
Confidence 4567899999998 4555555554 4555554 111223443 11 11122 1 0 11
Q ss_pred cCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEE-----ecCCchhHHHHHH
Q 022296 184 ASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMF-----EATNPRTSEWFIR 258 (299)
Q Consensus 184 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklif-----EAP~k~qQ~~fI~ 258 (299)
+.+++.| .+.++...++||+-+.+ |..+++|++..+.++++++..+.-.+.| +.|++.+-..-+.
T Consensus 68 ----~~E~~~M---~~dI~~~~~~GadG~Vf---G~L~~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~ 137 (201)
T PF03932_consen 68 ----DEEIEIM---KEDIRMLRELGADGFVF---GALTEDGEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLI 137 (201)
T ss_dssp ----HHHHHHH---HHHHHHHHHTT-SEEEE-----BETTSSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHH
T ss_pred ----HHHHHHH---HHHHHHHHHcCCCeeEE---EeECCCCCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHH
Confidence 2347888 99999999999987766 7888999999999999998777666666 4556555444444
Q ss_pred HhCCCccc
Q 022296 259 RYGPKVNL 266 (299)
Q Consensus 259 ~fG~~VNL 266 (299)
.+|-+==|
T Consensus 138 ~lG~~rVL 145 (201)
T PF03932_consen 138 ELGFDRVL 145 (201)
T ss_dssp HHT-SEEE
T ss_pred hcCCCEEE
Confidence 55654333
No 438
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=56.94 E-value=17 Score=33.30 Aligned_cols=90 Identities=12% Similarity=0.084 Sum_probs=57.0
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecCCc-HHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD-WAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~Gt-lfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (299)
.+...-++++..+.+++.+|+|.+.+.-+..+. |+..+++|..+..-. ++.. |+....|++.+.+.|+++
T Consensus 13 ~~~~~l~~~~~~~~~~~~ikvg~~~f~~~G~~~----i~~l~~~~~~i~~D~Kl~Di-----~~t~~~~i~~~~~~gad~ 83 (230)
T PRK00230 13 SKEEALAFLDQLDPAVLFVKVGMELFTAGGPQF----VRELKQRGFKVFLDLKLHDI-----PNTVAKAVRALAKLGVDM 83 (230)
T ss_pred CHHHHHHHHHhcCCcccEEEEcHHHHHhcCHHH----HHHHHhcCCCEEEEeehhhc-----cccHHHHHHHHHHcCCCE
Confidence 345667789999999999999999888666554 444555554443321 3222 235667888888888888
Q ss_pred EEecCCcccCChhHHHHHHHHHH
Q 022296 118 IELNVGSLEIPEETLLRYVRLVK 140 (299)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~ 140 (299)
|-|.- .-+.+.-..+.+.++
T Consensus 84 itvH~---~ag~~~i~~~~~~~~ 103 (230)
T PRK00230 84 VNVHA---SGGPRMMKAAREALE 103 (230)
T ss_pred EEEcc---cCCHHHHHHHHHHhh
Confidence 88773 333444333444333
No 439
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=56.92 E-value=74 Score=31.03 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHcC--CCEEEecCCcccC-------ChhHHHHHHHHHHH
Q 022296 102 AFKEYVEDCKQVG--FDTIELNVGSLEI-------PEETLLRYVRLVKS 141 (299)
Q Consensus 102 ~~~~yl~~~k~lG--F~~IEISdGti~i-------~~~~r~~lI~~~~~ 141 (299)
..++|.+.++.++ .|++|++-.+-.. ..+...++++.+++
T Consensus 152 ~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~ 200 (335)
T TIGR01036 152 AKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQ 200 (335)
T ss_pred CHHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHH
Confidence 6899999999999 9999997543322 23455566776665
No 440
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=56.82 E-value=1.3e+02 Score=28.20 Aligned_cols=74 Identities=16% Similarity=0.188 Sum_probs=52.5
Q ss_pred HHHHHHHHHhC-CceecCCc----HHHHHHHhCCc--------hHHHHHHHHHHcCCCEEEecCCcccCC----------
Q 022296 72 IEEVVKRAHQH-DVYVSTGD----WAEHLIRNGPS--------AFKEYVEDCKQVGFDTIELNVGSLEIP---------- 128 (299)
Q Consensus 72 l~eKI~l~~~~-gV~v~~Gt----lfE~a~~qg~~--------~~~~yl~~~k~lGF~~IEISdGti~i~---------- 128 (299)
|+..++.+++. +++++--| -+|.|+..|.+ ..++.+..+++.|...|=+.+..+.-+
T Consensus 63 l~~~v~~~~~~~~~plsiDT~~~~vi~~al~~G~~iINsis~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~ 142 (257)
T TIGR01496 63 VVPVIKALRDQPDVPISVDTYRAEVARAALEAGADIINDVSGGQDPAMLEVAAEYGVPLVLMHMRGTPRTMQENPHYEDV 142 (257)
T ss_pred HHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHcCCCEEEECCCCCCchhHHHHHHcCCcEEEEeCCCCCcccccCCCcccH
Confidence 88888999887 99998754 58889987732 155699999999999999876433222
Q ss_pred hhHH----HHHHHHHHHcCCc
Q 022296 129 EETL----LRYVRLVKSAGLK 145 (299)
Q Consensus 129 ~~~r----~~lI~~~~~~G~~ 145 (299)
.+++ .+.|+.+.+.|++
T Consensus 143 ~~~~~~~~~~~i~~~~~~Gi~ 163 (257)
T TIGR01496 143 VEEVLRFLEARAEELVAAGVA 163 (257)
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 1223 3556667777763
No 441
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=56.75 E-value=78 Score=28.80 Aligned_cols=76 Identities=17% Similarity=0.218 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhCCceec----C-CcHHH------------HHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--CChhH
Q 022296 71 FIEEVVKRAHQHDVYVS----T-GDWAE------------HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--IPEET 131 (299)
Q Consensus 71 ~l~eKI~l~~~~gV~v~----~-GtlfE------------~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~--i~~~~ 131 (299)
.+++.-+++.++|+.++ | |+|.. .... . .+++.++.|+++|.+.|-+--|... .+.++
T Consensus 41 ~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~ 117 (258)
T PRK09997 41 DIEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEFR-D--GVAAAIRYARALGNKKINCLVGKTPAGFSSEQ 117 (258)
T ss_pred CHHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHHHH-H--HHHHHHHHHHHhCCCEEEECCCCCCCCCCHHH
Confidence 36777778889999875 2 55432 1111 2 5889999999999999988666542 22222
Q ss_pred -H-------HHHHHHHHHcCCcccce
Q 022296 132 -L-------LRYVRLVKSAGLKAKPK 149 (299)
Q Consensus 132 -r-------~~lI~~~~~~G~~v~~E 149 (299)
+ .++.+.+++.|+++.-|
T Consensus 118 ~~~~~~~~l~~l~~~a~~~Gv~l~lE 143 (258)
T PRK09997 118 IHATLVENLRYAANMLMKEDILLLIE 143 (258)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 3 33345566677764444
No 442
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=56.72 E-value=32 Score=31.40 Aligned_cols=94 Identities=16% Similarity=0.263 Sum_probs=57.2
Q ss_pred HHHHcCCCEEEecCCcccC-ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCC
Q 022296 109 DCKQVGFDTIELNVGSLEI-PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNP 187 (299)
Q Consensus 109 ~~k~lGF~~IEISdGti~i-~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~ 187 (299)
...+.|++.+=|=|=.-.+ ....-.++|+++.+.-+ +.++.+. +
T Consensus 37 ~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~~~-----~~i~vgG----------------------------G-- 81 (229)
T PF00977_consen 37 AFNEQGADELHIVDLDAAKEGRGSNLELIKEIAKETG-----IPIQVGG----------------------------G-- 81 (229)
T ss_dssp HHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHHSS-----SEEEEES----------------------------S--
T ss_pred HHHHcCCCEEEEEEccCcccCchhHHHHHHHHHhcCC-----ccEEEeC----------------------------c--
Confidence 3458899988887644444 44556688888887421 1221110 0
Q ss_pred ccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecCCc
Q 022296 188 EIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 250 (299)
Q Consensus 188 ~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP~k 250 (299)
++..+.+++-|++||++|++=+.-+. +.++++++++.+|.+++++=-.-+
T Consensus 82 -------Irs~ed~~~ll~~Ga~~Vvigt~~~~------~~~~l~~~~~~~g~~~ivvslD~~ 131 (229)
T PF00977_consen 82 -------IRSIEDAERLLDAGADRVVIGTEALE------DPELLEELAERYGSQRIVVSLDAR 131 (229)
T ss_dssp -------E-SHHHHHHHHHTT-SEEEESHHHHH------CCHHHHHHHHHHGGGGEEEEEEEE
T ss_pred -------cCcHHHHHHHHHhCCCEEEeChHHhh------chhHHHHHHHHcCcccEEEEEEee
Confidence 01166679999999999999776332 235677777777777777655433
No 443
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=56.67 E-value=16 Score=31.73 Aligned_cols=80 Identities=20% Similarity=0.234 Sum_probs=0.0
Q ss_pred CCCCceeEec-CCCCCCcchhHHHHHHHhhcccccEEEeeCccc----ccCChhHHHHHHHHHHhCCceecC-CcHHHHH
Q 022296 22 RRFGVTEMRS-PHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSH----SLMPKPFIEEVVKRAHQHDVYVST-GDWAEHL 95 (299)
Q Consensus 22 R~~GlT~V~D-kGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs----~l~p~~~l~eKI~l~~~~gV~v~~-GtlfE~a 95 (299)
|..|....+| -|. +...++.+...- +|++|+...-. .-.....++..++++|++|+.+.- |
T Consensus 144 ~~~G~~i~ld~~g~----~~~~~~~l~~l~---~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g------ 210 (236)
T PF00563_consen 144 RSLGFRIALDDFGS----GSSSLEYLASLP---PDYIKLDGSLVRDLSDEEAQSLLQSLINLAKSLGIKVIAEG------ 210 (236)
T ss_dssp HHCT-EEEEEEETS----TCGCHHHHHHHC---GSEEEEEHHGHTTTTSHHHHHHHHHHHHHHHHTT-EEEEEC------
T ss_pred HhcCceeEeeeccC----Ccchhhhhhhcc---cccceeecccccccchhhHHHHHHHHHHHhhccccccceee------
Q ss_pred HHhCCchHHHHHHHHHHcCCCEEE
Q 022296 96 IRNGPSAFKEYVEDCKQVGFDTIE 119 (299)
Q Consensus 96 ~~qg~~~~~~yl~~~k~lGF~~IE 119 (299)
..+ ++-++.++++|++++.
T Consensus 211 -Ve~----~~~~~~l~~~G~~~~Q 229 (236)
T PF00563_consen 211 -VES----EEQLELLKELGVDYIQ 229 (236)
T ss_dssp -E-S----HHHHHHHHHTTESEEE
T ss_pred -cCC----HHHHHHHHHcCCCEEE
No 444
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=56.51 E-value=21 Score=37.47 Aligned_cols=51 Identities=12% Similarity=0.197 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHcCCCEEEecC------------------CcccC-----------C-------hhHHHHHHHHHHHcCCc
Q 022296 102 AFKEYVEDCKQVGFDTIELNV------------------GSLEI-----------P-------EETLLRYVRLVKSAGLK 145 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISd------------------Gti~i-----------~-------~~~r~~lI~~~~~~G~~ 145 (299)
.+.+-|.++|+||+++||++= |.-.. + .++..++|+.+.++|++
T Consensus 165 g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~ 244 (605)
T TIGR02104 165 GVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIR 244 (605)
T ss_pred cchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCE
Confidence 456778999999999999842 11111 1 37899999999999999
Q ss_pred ccceeee
Q 022296 146 AKPKFAV 152 (299)
Q Consensus 146 v~~E~gv 152 (299)
|+=.+-.
T Consensus 245 VilDvV~ 251 (605)
T TIGR02104 245 VIMDVVY 251 (605)
T ss_pred EEEEEEc
Confidence 9988765
No 445
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=56.43 E-value=64 Score=28.55 Aligned_cols=83 Identities=14% Similarity=0.212 Sum_probs=53.5
Q ss_pred EEEeeCcccccCChhHHHHHHHHHHhCCcee----cC-CcHHHHHHHhCCchHHHHHHHHHHcCCC-----EEEecCCcc
Q 022296 56 GLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV----ST-GDWAEHLIRNGPSAFKEYVEDCKQVGFD-----TIELNVGSL 125 (299)
Q Consensus 56 ~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v----~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~-----~IEISdGti 125 (299)
++|.+-|+..+.| ..++-++-|+++|+++ |. .+=-+-+ +. ..+-|++.++..|.. ++.+-+.+.
T Consensus 30 iikateG~~~~D~--~~~~n~~~A~~aGl~vG~Yhf~~~~~~~~a--~~--eA~~f~~~~~~~~~~~~~~~~lD~E~~~~ 103 (192)
T cd06522 30 IVKLTEGTTYRNP--YAASQIANAKAAGLKVSAYHYAHYTSAADA--QA--EARYFANTAKSLGLSKNTVMVADMEDSSS 103 (192)
T ss_pred EEEEcCCCCccCh--HHHHHHHHHHHCCCeeEEEEEEecCChHHH--HH--HHHHHHHHHHHcCCCCCCceEEEeecCCC
Confidence 8999999999988 7899999999999953 21 1111122 22 467788999987754 333333222
Q ss_pred -cCChhHHHHHHHHHHHcCC
Q 022296 126 -EIPEETLLRYVRLVKSAGL 144 (299)
Q Consensus 126 -~i~~~~r~~lI~~~~~~G~ 144 (299)
.--.+.-..++++++++|.
T Consensus 104 ~~~~~~~~~~F~~~v~~~g~ 123 (192)
T cd06522 104 SGNATANVNAFWQTMKAAGY 123 (192)
T ss_pred cchHHHHHHHHHHHHHHcCC
Confidence 1111223577888888776
No 446
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=56.29 E-value=84 Score=30.19 Aligned_cols=74 Identities=22% Similarity=0.330 Sum_probs=44.7
Q ss_pred HHHHHcCCCEEEecC----------CcccCChhHHHHHHHHHHHcCCcccceeeeecCC--CCCCCcccccccccccCCC
Q 022296 108 EDCKQVGFDTIELNV----------GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK--SDIPSDRDRAFGAYVARAP 175 (299)
Q Consensus 108 ~~~k~lGF~~IEISd----------Gti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~--sevg~~~d~~~~~~~~~~~ 175 (299)
..+.+.|+|.|=|-| .|++++-|+.....+.+++ |.++.. .|.|. +
T Consensus 30 ~~~d~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~R---------ga~~~~vv~DmPf------~------- 87 (261)
T PF02548_consen 30 RIADEAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRR---------GAPNAFVVADMPF------G------- 87 (261)
T ss_dssp HHHHHTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHH---------H-TSSEEEEE--T------T-------
T ss_pred HHHHHcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHh---------cCCCceEEecCCc------c-------
Confidence 345666777777764 5889999998777766666 332111 12221 0
Q ss_pred CccchhcccCCCccchhhhhhhHHHHHHHHH-ccCcEEEEec
Q 022296 176 RSTDKLFLASNPEIEVGVGINKSRRAERCLE-AGADMIMIDS 216 (299)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLe-AGA~~VIiEa 216 (299)
+. ..+.++. ++.+.+.+. +|||.|-+|+
T Consensus 88 -sy---------~~s~e~a---v~nA~rl~ke~GadaVKlEG 116 (261)
T PF02548_consen 88 -SY---------QASPEQA---VRNAGRLMKEAGADAVKLEG 116 (261)
T ss_dssp -SS---------TSSHHHH---HHHHHHHHHTTT-SEEEEEB
T ss_pred -cc---------cCCHHHH---HHHHHHHHHhcCCCEEEecc
Confidence 01 1236777 999999999 9999999998
No 447
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=56.23 E-value=20 Score=35.53 Aligned_cols=115 Identities=17% Similarity=0.220 Sum_probs=81.2
Q ss_pred HHHH-HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 103 FKEY-VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 103 ~~~y-l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
+++| +.+++.+|=|+|=+=...+ ++++..++++.+++.||.|+-|++-
T Consensus 191 ID~yQI~eAr~~GADAVLLIaaiL--~~~~L~~l~~~A~~LGme~LVEVH~----------------------------- 239 (338)
T PLN02460 191 VDAWQIYYARSKGADAILLIAAVL--PDLDIKYMLKICKSLGMAALIEVHD----------------------------- 239 (338)
T ss_pred CCHHHHHHHHHcCCCcHHHHHHhC--CHHHHHHHHHHHHHcCCeEEEEeCC-----------------------------
Confidence 3444 5788999999987766655 5788999999999999999998875
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHc-cCcEEEEeccccccCCCcccHHHHHHHHh-----ccCCCce--EEecC-Cchh
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEA-GADMIMIDSDDVCKHADSLRADIIAKVIG-----RLGLEKT--MFEAT-NPRT 252 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeA-GA~~VIiEargi~d~~G~~r~d~i~~ii~-----~l~~ekl--ifEAP-~k~q 252 (299)
.+++ ++.|++ ||..|-|-.|.+-.= ++.-+.-.+++. .++.+.+ +=|.= .-..
T Consensus 240 ---------~~El-------erAl~~~ga~iIGINNRdL~Tf--~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~ 301 (338)
T PLN02460 240 ---------EREM-------DRVLGIEGVELIGINNRSLETF--EVDISNTKKLLEGERGEQIREKGIIVVGESGLFTPD 301 (338)
T ss_pred ---------HHHH-------HHHHhcCCCCEEEEeCCCCCcc--eECHHHHHHHhhhccccccCCCCeEEEECCCCCCHH
Confidence 1233 778998 999999999976332 222444555665 4543333 34444 3346
Q ss_pred HHHHHHHhCCCccc
Q 022296 253 SEWFIRRYGPKVNL 266 (299)
Q Consensus 253 Q~~fI~~fG~~VNL 266 (299)
+...+++.|.|-=|
T Consensus 302 Dv~~l~~~GadAvL 315 (338)
T PLN02460 302 DVAYVQNAGVKAVL 315 (338)
T ss_pred HHHHHHHCCCCEEE
Confidence 78888889987766
No 448
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=56.20 E-value=27 Score=30.06 Aligned_cols=94 Identities=20% Similarity=0.308 Sum_probs=51.6
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~~ 117 (299)
|.+-+.-+|+.+|-= .+=+|- -.| .++-++.++++++.+-. ..+. .+.-..+++..+.+++.|...
T Consensus 17 Gk~iv~~~l~~~Gfe--Vi~LG~----~v~---~e~~v~aa~~~~adiVglS~l~----~~~~~~~~~~~~~l~~~gl~~ 83 (134)
T TIGR01501 17 GNKILDHAFTNAGFN--VVNLGV----LSP---QEEFIKAAIETKADAILVSSLY----GHGEIDCKGLRQKCDEAGLEG 83 (134)
T ss_pred hHHHHHHHHHHCCCE--EEECCC----CCC---HHHHHHHHHHcCCCEEEEeccc----ccCHHHHHHHHHHHHHCCCCC
Confidence 445566666666632 333341 122 44556666666664322 2221 111113566677777777743
Q ss_pred EEe-cCCcccCChhHHHHHHHHHHHcCCc
Q 022296 118 IEL-NVGSLEIPEETLLRYVRLVKSAGLK 145 (299)
Q Consensus 118 IEI-SdGti~i~~~~r~~lI~~~~~~G~~ 145 (299)
+=| =-|.+.+|+++.....+++++.||.
T Consensus 84 ~~vivGG~~vi~~~d~~~~~~~l~~~Gv~ 112 (134)
T TIGR01501 84 ILLYVGGNLVVGKQDFPDVEKRFKEMGFD 112 (134)
T ss_pred CEEEecCCcCcChhhhHHHHHHHHHcCCC
Confidence 333 6677778888777777777776644
No 449
>PLN02540 methylenetetrahydrofolate reductase
Probab=56.14 E-value=1.2e+02 Score=32.21 Aligned_cols=67 Identities=10% Similarity=-0.049 Sum_probs=42.7
Q ss_pred ccEEEeeCcccccCChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc
Q 022296 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 124 (299)
Q Consensus 54 ID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt 124 (299)
-+|+=+-||.-.-+....|+--..+-+.+|+.+++= |- --.+...+++.|..++++|++.|=+=.|-
T Consensus 29 P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTC----rd~n~~~L~~~L~~a~~~GIrNILALrGD 96 (565)
T PLN02540 29 PLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTC----TNMPVEKIDHALETIKSNGIQNILALRGD 96 (565)
T ss_pred CCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeee----cCCCHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 677778888776555555544444444569977752 21 12222368889999999999988544443
No 450
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=56.04 E-value=13 Score=34.48 Aligned_cols=56 Identities=20% Similarity=0.356 Sum_probs=29.5
Q ss_pred hcccccEEEeeCcccccCChhHHHHHHHHHHhCCcee---cC----C-cHHHHHHHhCCchHHHHHHHHHHcCCC
Q 022296 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV---ST----G-DWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (299)
Q Consensus 50 ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v---~~----G-tlfE~a~~qg~~~~~~yl~~~k~lGF~ 116 (299)
|+-|-|....|-=+-.+.| +.+.+.|+.+ -| | ++|+.+=.+ .+++|++.+++.|..
T Consensus 119 AaGYaDa~Rvgsv~Pl~~P--------~vaa~ag~DvaMvDTaiKDGkslFdfm~~e---~l~eFvd~Ah~hGL~ 182 (235)
T COG1891 119 AAGYADAHRVGSVSPLLLP--------EVAAEAGADVAMVDTAIKDGKSLFDFMDEE---ELEEFVDLAHEHGLE 182 (235)
T ss_pred eccccchhhccCcCccccH--------HHHHhcCCCEEEEecccccchhHHhhhcHH---HHHHHHHHHHHcchH
Confidence 4556666666643333333 2344444422 12 4 466665444 566666666666654
No 451
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=56.02 E-value=1.4e+02 Score=28.90 Aligned_cols=167 Identities=10% Similarity=0.129 Sum_probs=99.3
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceecC----CcH----HHHH------HHhC---C----
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST----GDW----AEHL------IRNG---P---- 100 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~----Gtl----fE~a------~~qg---~---- 100 (299)
.++++|..|-. =+++-|.+-+++-+.++.-|+-|.+.+.++.. |++ ++.+ +.+. |
T Consensus 5 ~~k~iL~~A~~----~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValH 80 (286)
T PRK12738 5 STKYLLQDAQA----NGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALH 80 (286)
T ss_pred cHHHHHHHHHH----CCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 45555555433 25566777777777777777777777764432 111 1110 0111 0
Q ss_pred ---chHHHHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccC
Q 022296 101 ---SAFKEYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (299)
Q Consensus 101 ---~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r----~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~ 173 (299)
..=-+.+..|-+.||+.|=+..-.+ |.++= .++++.++..|.-|--|+|.=-+ ++|. .....
T Consensus 81 LDHg~~~e~i~~ai~~GFtSVM~DgS~l--p~eeNi~~T~evv~~Ah~~gv~VEaElG~igg------~ed~---~~~~~ 149 (286)
T PRK12738 81 LDHHESLDDIRRKVHAGVRSAMIDGSHF--PFAENVKLVKSVVDFCHSQDCSVEAELGRLGG------VEDD---MSVDA 149 (286)
T ss_pred CCCCCCHHHHHHHHHcCCCeEeecCCCC--CHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCC------ccCC---ccccc
Confidence 0123467778899999999976554 44443 36778888899999999998311 1120 00000
Q ss_pred CCCccchhcccCCCccchhhhhhhHHHHHHHHH-ccCcEEEEec---cccccCCCcccHHHHHHHHhccCC
Q 022296 174 APRSTDKLFLASNPEIEVGVGINKSRRAERCLE-AGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGL 240 (299)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLe-AGA~~VIiEa---rgi~d~~G~~r~d~i~~ii~~l~~ 240 (299)
. ...+| +|++. +++.+ -|.|.+=+== -|+|...-+++-|.+++|-+.++.
T Consensus 150 ~--~~~~T--------~peea-------~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~v 203 (286)
T PRK12738 150 E--SAFLT--------DPQEA-------KRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDV 203 (286)
T ss_pred c--hhcCC--------CHHHH-------HHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCC
Confidence 0 00111 14444 77776 4998765533 399988889999999999887653
No 452
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=55.74 E-value=23 Score=35.85 Aligned_cols=50 Identities=16% Similarity=0.296 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc-------------cC-----------------ChhHHHHHHHHHHHcCCcccceeee
Q 022296 103 FKEYVEDCKQVGFDTIELNVGSL-------------EI-----------------PEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti-------------~i-----------------~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
+.+-++++++|||++|.||==+- +. +.++..++|+.++++|++|+-.+-.
T Consensus 24 I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D~V~ 103 (479)
T PRK09441 24 LAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYADVVL 103 (479)
T ss_pred HHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 44447788899999998864211 11 3678999999999999998876644
No 453
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=55.63 E-value=26 Score=35.41 Aligned_cols=16 Identities=44% Similarity=0.675 Sum_probs=13.8
Q ss_pred HHHHHHccCcEEEEec
Q 022296 201 AERCLEAGADMIMIDS 216 (299)
Q Consensus 201 ~~~dLeAGA~~VIiEa 216 (299)
+...|++||+.||+=+
T Consensus 342 i~kAla~GA~~V~~G~ 357 (450)
T TIGR01302 342 IVKALAAGADAVMLGS 357 (450)
T ss_pred HHHHHHcCCCEEEECc
Confidence 3789999999999865
No 454
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.55 E-value=22 Score=34.34 Aligned_cols=42 Identities=26% Similarity=0.494 Sum_probs=33.5
Q ss_pred HHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccC--CCceEEecC
Q 022296 198 SRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG--LEKTMFEAT 248 (299)
Q Consensus 198 i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~--~eklifEAP 248 (299)
.+++.+.+++|||+|+++ ++..+.+.+++..+. ..++.+||.
T Consensus 206 leea~eA~~~GaD~I~LD---------n~~~e~l~~av~~~~~~~~~i~leAs 249 (288)
T PRK07428 206 LEQVQEALEYGADIIMLD---------NMPVDLMQQAVQLIRQQNPRVKIEAS 249 (288)
T ss_pred HHHHHHHHHcCCCEEEEC---------CCCHHHHHHHHHHHHhcCCCeEEEEE
Confidence 566789999999999997 677788888887554 456788887
No 455
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=55.53 E-value=1.7e+02 Score=26.89 Aligned_cols=54 Identities=17% Similarity=0.061 Sum_probs=34.4
Q ss_pred HHHHHHHHHccCcEEEEeccccccCCC----cccHHHHHHHHhccCCCceEEecCCchh
Q 022296 198 SRRAERCLEAGADMIMIDSDDVCKHAD----SLRADIIAKVIGRLGLEKTMFEATNPRT 252 (299)
Q Consensus 198 i~~~~~dLeAGA~~VIiEargi~d~~G----~~r~d~i~~ii~~l~~eklifEAP~k~q 252 (299)
.+.++..++.|++.-+ .+-+.+...| +-+...+.++++..++++|++|...+..
T Consensus 191 ~~~~~~~~~~G~~i~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~ill~TD~p~~ 248 (293)
T cd00530 191 PDYLLKIAALGAYLEF-DGIGKDKIFGYPSDETRADAVKALIDEGYGDRLLLSHDVFRK 248 (293)
T ss_pred HHHHHHHHhCCCEEEe-CCCCcccccCCCCHHHHHHHHHHHHHCCCcCCEEEeCCcCch
Confidence 3455888889964433 2322221111 2356778889999999999999876553
No 456
>PRK10785 maltodextrin glucosidase; Provisional
Probab=55.20 E-value=23 Score=37.17 Aligned_cols=50 Identities=18% Similarity=0.200 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc-------------cC-----ChhHHHHHHHHHHHcCCcccceeee
Q 022296 103 FKEYVEDCKQVGFDTIELNVGSL-------------EI-----PEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti-------------~i-----~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
+.+=|.++++||+++|.++==+- .| +.++..+||+.|+++|++|+-.+-.
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~ 248 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVF 248 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 55558899999999999975221 22 2378999999999999998876654
No 457
>PLN02858 fructose-bisphosphate aldolase
Probab=55.01 E-value=1.5e+02 Score=34.69 Aligned_cols=183 Identities=15% Similarity=0.175 Sum_probs=115.8
Q ss_pred CCceeEecCCC-------------CCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceec---
Q 022296 24 FGVTEMRSPHY-------------TLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--- 87 (299)
Q Consensus 24 ~GlT~V~DkGl-------------~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~--- 87 (299)
.|+-.|.=||- =.+++...++++|..|-+- +++-|.+-+++-+.++.-|+-|.+.+.++.
T Consensus 1070 ~glpvVtk~G~~G~~~tL~~~~~~l~~~~~v~~~~~l~~A~~~----~yav~afn~~n~e~~~avi~aAe~~~sPvIl~~ 1145 (1378)
T PLN02858 1070 PGVPYIVFPGNVGDSTALAEVVKSWARPARSSTKELLLNAEKG----GYAVGAFNVYNLEGIEAVVAAAEAEKSPAILQV 1145 (1378)
T ss_pred CCCcEEEeCCcCCChHHHHHHHHHhcCcCCccHHHHHHHHHHC----CcEEEEEEeCCHHHHHHHHHHHHHhCCCEEEEC
Confidence 37777777773 0112334566666665432 678899999999999999999999887553
Q ss_pred -CCcH-------HHH--HHHhC---C-------chHHHHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHHHHHcC
Q 022296 88 -TGDW-------AEH--LIRNG---P-------SAFKEYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRLVKSAG 143 (299)
Q Consensus 88 -~Gtl-------fE~--a~~qg---~-------~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r----~~lI~~~~~~G 143 (299)
+|+. ... .+.+. | ..=.+.+..|-+.||+.|=+.--.. |.|+= .+++++++..|
T Consensus 1146 ~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHLDHg~~~~~i~~ai~~Gf~SVM~DgS~l--~~eeNi~~t~~vv~~Ah~~g 1223 (1378)
T PLN02858 1146 HPGALKQGGIPLVSCCIAAAEQASVPITVHFDHGTSKHELLEALELGFDSVMVDGSHL--SFTENISYTKSISSLAHSKG 1223 (1378)
T ss_pred CccHHhhcCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCCEEEEeCCCC--CHHHHHHHHHHHHHHHHHcC
Confidence 3322 111 11211 0 1124678888899999999975554 44443 36778888889
Q ss_pred CcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHc-cCcEEEEec---ccc
Q 022296 144 LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEA-GADMIMIDS---DDV 219 (299)
Q Consensus 144 ~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeA-GA~~VIiEa---rgi 219 (299)
.-|--|+|.=-+ .+|. . ....-...+| + .++++++++. |.|..-+== -|+
T Consensus 1224 v~VEaElG~v~g------~e~~---~--~~~~~~~~~T------~---------p~~a~~Fv~~TgvD~LAvaiGt~HG~ 1277 (1378)
T PLN02858 1224 LMVEAELGRLSG------TEDG---L--TVEEYEAKLT------D---------VDQAKEFIDETGIDALAVCIGNVHGK 1277 (1378)
T ss_pred CEEEEEecccCC------ccCC---c--cccccccCCC------C---------HHHHHHHHHhcCCcEEeeeccccccc
Confidence 999999988321 1120 0 0000000111 1 4555888864 888876643 399
Q ss_pred ccC-CCcccHHHHHHHHhcc
Q 022296 220 CKH-ADSLRADIIAKVIGRL 238 (299)
Q Consensus 220 ~d~-~G~~r~d~i~~ii~~l 238 (299)
|.. .-+++-|++.+|-+.+
T Consensus 1278 Y~~~~p~l~~~~l~~i~~~~ 1297 (1378)
T PLN02858 1278 YPASGPNLRLDLLKELRALS 1297 (1378)
T ss_pred CCCCCCccCHHHHHHHHHHh
Confidence 987 4689999999999887
No 458
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=54.88 E-value=14 Score=35.74 Aligned_cols=62 Identities=13% Similarity=0.079 Sum_probs=41.6
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhh-cccc--cEEEeeCcccccCChhHHHHHHHHHHhCCceecCCcHHHHH
Q 022296 24 FGVTEMRSPHYTLSSSHNVLEDIFESM-GQFV--DGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHL 95 (299)
Q Consensus 24 ~GlT~V~DkGl~~~~g~~~l~DlLe~a-g~yI--D~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a 95 (299)
.++-+..|=.+ . ++..++.+++.- -++| |.-|.|+ +++ .++..++|+.||+.++++.+.+..
T Consensus 236 ~~ipia~~E~~--~-~~~~~~~~i~~~~~d~i~~~~~~~GG----it~---~~~ia~~A~~~gi~~~~h~~~~~~ 300 (355)
T cd03321 236 LRTPVQMGENW--L-GPEEMFKALSAGACDLVMPDLMKIGG----VTG---WLRASALAEQAGIPMSSHLFQEIS 300 (355)
T ss_pred cCCCEEEcCCC--c-CHHHHHHHHHhCCCCeEecCHhhhCC----HHH---HHHHHHHHHHcCCeecccchHHHH
Confidence 45555655543 3 777888888753 3332 4456665 444 667899999999999998665543
No 459
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=54.85 E-value=2e+02 Score=28.00 Aligned_cols=110 Identities=21% Similarity=0.196 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHh-CCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCC
Q 022296 40 HNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQ-HDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (299)
Q Consensus 40 ~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~-~gV~v~~G--tlfE~a~~qg~~~~~~yl~~~k~lGF~ 116 (299)
..+.+.+.+.-.++|| .|-.+.| +.+-+...|+ |++.+.-| |+-|...+.. +|||
T Consensus 77 ~~Ea~~L~eaGvDiID------aT~r~rP---~~~~~~~iK~~~~~l~MAD~stleEal~a~~-------------~Gad 134 (283)
T cd04727 77 FVEAQILEALGVDMID------ESEVLTP---ADEEHHIDKHKFKVPFVCGARNLGEALRRIS-------------EGAA 134 (283)
T ss_pred HHHHHHHHHcCCCEEe------ccCCCCc---HHHHHHHHHHHcCCcEEccCCCHHHHHHHHH-------------CCCC
Q ss_pred EE--EecCCccc--------------------CChhHH---H-------HHHHHHHHc-CCccc--ceeeeecCCCCCCC
Q 022296 117 TI--ELNVGSLE--------------------IPEETL---L-------RYVRLVKSA-GLKAK--PKFAVMFNKSDIPS 161 (299)
Q Consensus 117 ~I--EISdGti~--------------------i~~~~r---~-------~lI~~~~~~-G~~v~--~E~gvK~~~sevg~ 161 (299)
.| -.+-+|=. +++++. . ++++++++. .+.|. .|=|+ .+
T Consensus 135 ~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI---~T---- 207 (283)
T cd04727 135 MIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGV---AT---- 207 (283)
T ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCC---CC----
Q ss_pred cccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEE
Q 022296 162 DRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMI 214 (299)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIi 214 (299)
-++++..+++||+-|.+
T Consensus 208 ------------------------------------pena~~v~e~GAdgVaV 224 (283)
T cd04727 208 ------------------------------------PADAALMMQLGADGVFV 224 (283)
T ss_pred ------------------------------------HHHHHHHHHcCCCEEEE
No 460
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=54.56 E-value=69 Score=30.94 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCceec--CCcH--------HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc
Q 022296 71 FIEEVVKRAHQHDVYVS--TGDW--------AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL 125 (299)
Q Consensus 71 ~l~eKI~l~~~~gV~v~--~Gtl--------fE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti 125 (299)
..++-+++||.+||.|- .|.. .+..+.. ..++-.+.+++.|.|++-||-||.
T Consensus 116 ~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T---~pe~a~~Fv~~TgvD~LAvaiGt~ 177 (283)
T PRK07998 116 FTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKT---EPEKVKDFVERTGCDMLAVSIGNV 177 (283)
T ss_pred HHHHHHHHHHHcCCEEEEEeccCCCccccccccccccC---CHHHHHHHHHHhCcCeeehhcccc
Confidence 45788999999999772 2311 1112222 456667778888999999999995
No 461
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.22 E-value=26 Score=25.69 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=34.5
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCc-----------ccCC-hhHHHHHHHHHHHcCCcc
Q 022296 100 PSAFKEYVEDCKQVGFDTIELNVGS-----------LEIP-EETLLRYVRLVKSAGLKA 146 (299)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGt-----------i~i~-~~~r~~lI~~~~~~G~~v 146 (299)
|+++.++++...+ |.+.+|++-.. ++.+ .+...+++..++++|+.+
T Consensus 9 PG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 9 PGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEALGYPY 66 (68)
T ss_pred CCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 5578888888888 88888765432 3333 378889999999999875
No 462
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=54.16 E-value=30 Score=29.33 Aligned_cols=45 Identities=20% Similarity=0.367 Sum_probs=26.5
Q ss_pred HHHHHccCcEEEEeccc---cccCCCcccHHHHHHHHhccCCCceEEec
Q 022296 202 ERCLEAGADMIMIDSDD---VCKHADSLRADIIAKVIGRLGLEKTMFEA 247 (299)
Q Consensus 202 ~~dLeAGA~~VIiEarg---i~d~~G~~r~d~i~~ii~~l~~eklifEA 247 (299)
-+. +|||+.+++-+.. +...--.-+..-+++++..+..+-+++|=
T Consensus 52 ~r~-~aGA~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~Dlvl~eG 99 (140)
T PF03205_consen 52 WRF-KAGADVVLVSSDEPIALETQFHQRKSMDLEELLSLLPVDLVLVEG 99 (140)
T ss_dssp HHH-HCT-SEEEEECSSEEEEEEECSCCCCCBHHHHHHHCC-SEEEEES
T ss_pred ccc-cccceEEEEEcCCceeeeeeccccCCCCHHHHHHhhCCCEEEEec
Confidence 345 9999999998875 11111011222366777777788888884
No 463
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=54.02 E-value=1.6e+02 Score=27.25 Aligned_cols=90 Identities=8% Similarity=0.079 Sum_probs=60.2
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHH-hC---------CceecCCcHHHHHHHhCCchHHHHHH
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAH-QH---------DVYVSTGDWAEHLIRNGPSAFKEYVE 108 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~-~~---------gV~v~~GtlfE~a~~qg~~~~~~yl~ 108 (299)
.....+.+|+...+. +-.||.++.+++.+++-.+.+- +. +=+|++-+|-| ..- ...++++
T Consensus 84 s~e~~~~~l~~Ga~k-----vvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~---~~~--~~~e~~~ 153 (232)
T PRK13586 84 DIEKAKRLLSLDVNA-----LVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKE---KSM--EVIDGIK 153 (232)
T ss_pred CHHHHHHHHHCCCCE-----EEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCee---CCC--CHHHHHH
Confidence 445566677765554 4679999999999988877772 11 11455545755 333 6889999
Q ss_pred HHHHcCCCEEEe----cCCcccCChhHHHHHHHHHHH
Q 022296 109 DCKQVGFDTIEL----NVGSLEIPEETLLRYVRLVKS 141 (299)
Q Consensus 109 ~~k~lGF~~IEI----SdGti~i~~~~r~~lI~~~~~ 141 (299)
.+.++|+..|=+ .||+..=++-+. ++.+++
T Consensus 154 ~l~~~g~~~ii~tdI~~dGt~~G~d~el---~~~~~~ 187 (232)
T PRK13586 154 KVNELELLGIIFTYISNEGTTKGIDYNV---KDYARL 187 (232)
T ss_pred HHHhcCCCEEEEecccccccCcCcCHHH---HHHHHh
Confidence 999999987766 367776666554 444444
No 464
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=53.90 E-value=67 Score=33.08 Aligned_cols=119 Identities=17% Similarity=0.137 Sum_probs=73.9
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccc-cEEEeeCcccc-cCChhHHHHHHHHHHhCCc-eecCC--cHHHHHH-HhC-
Q 022296 27 TEMRSPHYTLSSSHNVLEDIFESMGQFV-DGLKFSGGSHS-LMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLI-RNG- 99 (299)
Q Consensus 27 T~V~DkGl~~~~g~~~l~DlLe~ag~yI-D~lKfg~GTs~-l~p~~~l~eKI~l~~~~gV-~v~~G--tlfE~a~-~qg- 99 (299)
|..++=|=+..-.+..++++++..-..+ +.-...-=|.- --|...-.++++.++++|| .++-| ++=+..+ .-|
T Consensus 221 tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR 300 (488)
T PRK08207 221 TIYFGGGTPTSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKAIGR 300 (488)
T ss_pred EEEEeCCCccCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCC
Confidence 4555555332225788999999886654 32111001111 1444556899999999999 66666 5543333 112
Q ss_pred ---CchHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHcCCc
Q 022296 100 ---PSAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (299)
Q Consensus 100 ---~~~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~G~~ 145 (299)
.+.+.+-++.|++.||+.| -+--|.-.-+.++..+-++.+.+.+..
T Consensus 301 ~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd 351 (488)
T PRK08207 301 HHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPE 351 (488)
T ss_pred CCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcC
Confidence 2346667788899999754 445566666777788888888886654
No 465
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=53.61 E-value=44 Score=31.17 Aligned_cols=67 Identities=16% Similarity=0.226 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccc
Q 022296 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTD 179 (299)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~ 179 (299)
++......+.+-+=||++||| ++......+.|+.+++ ..|+.-+
T Consensus 24 ~e~a~~~a~Ali~gGi~~IEI-----Tl~sp~a~e~I~~l~~----~~p~~lI--------------------------- 67 (211)
T COG0800 24 VEEALPLAKALIEGGIPAIEI-----TLRTPAALEAIRALAK----EFPEALI--------------------------- 67 (211)
T ss_pred HHHHHHHHHHHHHcCCCeEEE-----ecCCCCHHHHHHHHHH----hCcccEE---------------------------
Q ss_pred hhcccCCCccchhhhhhhHHHHHHHHHccCcEEE
Q 022296 180 KLFLASNPEIEVGVGINKSRRAERCLEAGADMIM 213 (299)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VI 213 (299)
.|||- ++++++ +...+|||++|+
T Consensus 68 ---GAGTV-L~~~q~-------~~a~~aGa~fiV 90 (211)
T COG0800 68 ---GAGTV-LNPEQA-------RQAIAAGAQFIV 90 (211)
T ss_pred ---ccccc-cCHHHH-------HHHHHcCCCEEE
No 466
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=53.59 E-value=75 Score=31.13 Aligned_cols=114 Identities=13% Similarity=0.230 Sum_probs=75.7
Q ss_pred eEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCc-eecCC--cHHHHHHHh-C----
Q 022296 28 EMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G---- 99 (299)
Q Consensus 28 ~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV-~v~~G--tlfE~a~~q-g---- 99 (299)
.-++-|-+..-.+..++.+++..... +..-+.+ -.-|...-.++++.++++|| .++.| ++-+..+.. |
T Consensus 62 iy~GGGTPs~l~~~~l~~ll~~i~~~-~~~eit~---E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~ 137 (370)
T PRK06294 62 VFFGGGTPSLVPPALIQDILKTLEAP-HATEITL---EANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTHS 137 (370)
T ss_pred EEECCCccccCCHHHHHHHHHHHHhC-CCCeEEE---EeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCC
Confidence 33444533222677899999887654 4344544 33555555899999999999 88888 676655532 1
Q ss_pred CchHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHcCCc
Q 022296 100 PSAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (299)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~G~~ 145 (299)
.+.+.+-++.+++.||+.| -+--|.=.=+.+++.+-++.+.+.+..
T Consensus 138 ~~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt~~~~~~~l~~~~~l~~~ 185 (370)
T PRK06294 138 SSKAIDAVQECSEHGFSNLSIDLIYGLPTQSLSDFIVDLHQAITLPIT 185 (370)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHccCCC
Confidence 1246667778999999854 445555555677777778888876643
No 467
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=53.55 E-value=31 Score=31.32 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHH
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKS 141 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~ 141 (299)
...+..+.+.+-|++.|||..-+- ...+.|+.+++
T Consensus 23 ~~~~~~~a~~~gGi~~iEvt~~~~-----~~~~~i~~l~~ 57 (206)
T PRK09140 23 EALAHVGALIEAGFRAIEIPLNSP-----DPFDSIAALVK 57 (206)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCc-----cHHHHHHHHHH
Confidence 556678899999999999985443 34457777776
No 468
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=53.47 E-value=1.4e+02 Score=25.18 Aligned_cols=70 Identities=17% Similarity=0.093 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC-C--hhHHHHHHHHHHHc
Q 022296 70 PFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI-P--EETLLRYVRLVKSA 142 (299)
Q Consensus 70 ~~l~eKI~l~~~~gV~v~~G--tlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i-~--~~~r~~lI~~~~~~ 142 (299)
+.++...+.+..+.+++..| ..-.. ......-+..+.|++.|.|+|.+-.-.--. + .+.-.+.++.+.+.
T Consensus 35 ~~i~~~~~~~~~~~~~v~~~v~~~~~~---~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~ 109 (201)
T cd00945 35 GYVRLAADALAGSDVPVIVVVGFPTGL---TTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEA 109 (201)
T ss_pred HHHHHHHHHhCCCCCeEEEEecCCCCC---CcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHH
Confidence 45555555544334654443 11100 111245567789999999999986444322 2 46666777777774
No 469
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=53.40 E-value=19 Score=29.87 Aligned_cols=49 Identities=29% Similarity=0.427 Sum_probs=38.4
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 022296 99 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
|...+++|++.|++.|++.|=|+|= -+...-....+.+++.|+++++ |+
T Consensus 14 g~~~~~e~v~~A~~~Gl~~i~iTDH---~~~~~~~~~~~~~~~~~i~vi~--G~ 62 (175)
T PF02811_consen 14 GKDSPEEYVEQAKEKGLDAIAITDH---NNFAGYPDFYKEAKKKGIKVIP--GV 62 (175)
T ss_dssp SSSSHHHHHHHHHHTTESEEEEEEE---TTTTTHHHHHHHHHHTTSEEEE--EE
T ss_pred hcCCHHHHHHHHHHcCCCEEEEcCC---cccccchHHHHHHHhcCCceEE--eE
Confidence 4457999999999999999999987 2223345677888889999887 55
No 470
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=53.40 E-value=1.8e+02 Score=28.81 Aligned_cols=201 Identities=14% Similarity=0.206 Sum_probs=124.4
Q ss_pred hHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceec----------CC-cHHHHHH------HhC----
Q 022296 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----------TG-DWAEHLI------RNG---- 99 (299)
Q Consensus 41 ~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~----------~G-tlfE~a~------~qg---- 99 (299)
..++++|..|-+. +++-|.+-+++-+.++.-|+-|.+.+-+|- .| ++++.+. .+.
T Consensus 10 v~~k~lL~~A~~~----~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~~ 85 (321)
T PRK07084 10 VNTREMFAKAVKG----GYAIPAYNFNNMEQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEYAKELGCP 85 (321)
T ss_pred cCHHHHHHHHHHC----CceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCCC
Confidence 3677888777654 678888888888889999998888887542 23 2344332 211
Q ss_pred -C-------chHHHHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 022296 100 -P-------SAFKEYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (299)
Q Consensus 100 -~-------~~~~~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~ 169 (299)
| ..=-+.+..|-+.||+.|=+..-.+++.+-- =.++++.++..|.-|--|+|.=-+ .+|...
T Consensus 86 VPV~lHLDHg~~~e~i~~ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg------~ed~~~-- 157 (321)
T PRK07084 86 IPIVLHLDHGDSFELCKDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAG------VEDEVS-- 157 (321)
T ss_pred CcEEEECCCCCCHHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecC------ccCCcc--
Confidence 1 1124578889999999999976664443322 246788888999999999998321 112100
Q ss_pred cccCCCCccchhcccCCCccchhhhhhhHHHHHHHHH-ccCcEEEEec---cccccC-----CCcccHHHHHHHHhccC-
Q 022296 170 YVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLE-AGADMIMIDS---DDVCKH-----ADSLRADIIAKVIGRLG- 239 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLe-AGA~~VIiEa---rgi~d~-----~G~~r~d~i~~ii~~l~- 239 (299)
-. ...+| ++++. +++++ -|+|..-+== -|+|.. .-+++-|.+++|-+.++
T Consensus 158 ---~~--~~~~T--------~peeA-------~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~ 217 (321)
T PRK07084 158 ---AE--HHTYT--------QPEEV-------EDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPG 217 (321)
T ss_pred ---Cc--ccccC--------CHHHH-------HHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCC
Confidence 00 01111 24444 77776 4998776543 389986 34699999999988773
Q ss_pred CCceEEecC-CchhHHHHHHHhCCCc--ccccCCCCc
Q 022296 240 LEKTMFEAT-NPRTSEWFIRRYGPKV--NLFVDHSQV 273 (299)
Q Consensus 240 ~eklifEAP-~k~qQ~~fI~~fG~~V--NLgI~~~eV 273 (299)
.--++==+. .|..-.--|..||-+. |.||+.+|+
T Consensus 218 vPLVLHGgSg~~~~~~~~~~~~g~~~~~~~Gi~~e~~ 254 (321)
T PRK07084 218 FPIVLHGSSSVPQEYVKTINEYGGKLKDAIGIPEEQL 254 (321)
T ss_pred CCEEEeCCCCCcHHHHHHHHHhcCccccCCCCCHHHH
Confidence 333333333 3444444567777544 334655553
No 471
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=53.27 E-value=82 Score=31.69 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC------------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEI------------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i------------~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~ 169 (299)
.+.++.+.+.+.|.|+||++=.+-.. ..+.-.++++.+++. .-+| +-+| .+
T Consensus 128 ~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~--~~iP-v~vK--Ls------------ 190 (385)
T PLN02495 128 AWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK--ATVP-VWAK--MT------------ 190 (385)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh--hcCc-eEEE--eC------------
Confidence 56667778888999999997654322 334444555666653 1244 4444 22
Q ss_pred cccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEE
Q 022296 170 YVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMI 214 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIi 214 (299)
|. +..+ ..-++..+++||+-|++
T Consensus 191 ---Pn----------------~t~i---~~ia~aa~~~Gadgi~l 213 (385)
T PLN02495 191 ---PN----------------ITDI---TQPARVALKSGCEGVAA 213 (385)
T ss_pred ---CC----------------hhhH---HHHHHHHHHhCCCEEEE
Confidence 21 2224 55577899999998875
No 472
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=53.24 E-value=46 Score=32.68 Aligned_cols=145 Identities=17% Similarity=0.207 Sum_probs=80.8
Q ss_pred hhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHh-CC-c--eecCC-cHHHHHHHhCCchHHHHHHHHHH-c
Q 022296 40 HNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQ-HD-V--YVSTG-DWAEHLIRNGPSAFKEYVEDCKQ-V 113 (299)
Q Consensus 40 ~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~-~g-V--~v~~G-tlfE~a~~qg~~~~~~yl~~~k~-l 113 (299)
...+.++|...|=-.+|++...=|-. =|.+.++ .| . ...|| ..-|.. +++|++..++ +
T Consensus 64 g~~~~~~l~~~gi~~~fv~v~g~TRi---------nvki~~~~~~~~Tein~~Gp~is~~~-------~~~~l~~~~~~l 127 (310)
T COG1105 64 GEFFVALLKDEGIPDAFVEVKGDTRI---------NVKILDEEDGEETEINFPGPEISEAE-------LEQFLEQLKALL 127 (310)
T ss_pred HHHHHHHHHhcCCCceEEEccCCCee---------eEEEEecCCCcEEEecCCCCCCCHHH-------HHHHHHHHHHhc
Confidence 34588888888877777777654422 2223333 22 2 12245 333333 3444444444 3
Q ss_pred CCCEEEecCCcc--cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCC-----ccchhcccCC
Q 022296 114 GFDTIELNVGSL--EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR-----STDKLFLASN 186 (299)
Q Consensus 114 GF~~IEISdGti--~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~-----~~~~~~~~~~ 186 (299)
.=+.+=|=.||+ .+|.+...++|+.+++.|-+|.=...- .++.+.+...|| ..|+....+.
T Consensus 128 ~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg------------~~L~~~L~~~P~lIKPN~~EL~~~~g~ 195 (310)
T COG1105 128 ESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSG------------EALLAALEAKPWLIKPNREELEALFGR 195 (310)
T ss_pred ccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECCh------------HHHHHHHccCCcEEecCHHHHHHHhCC
Confidence 322334445777 688999999999999976664332211 011111112223 3344444554
Q ss_pred CccchhhhhhhHHHHHHHHHccCcEEEEe
Q 022296 187 PEIEVGVGINKSRRAERCLEAGADMIMID 215 (299)
Q Consensus 187 ~~~~~~~~~~~i~~~~~dLeAGA~~VIiE 215 (299)
+..+.++. ++.+++-++.|+..|||=
T Consensus 196 ~~~~~~d~---i~~a~~l~~~g~~~ViVS 221 (310)
T COG1105 196 ELTTLEDV---IKAARELLAEGIENVIVS 221 (310)
T ss_pred CCCChHHH---HHHHHHHHHCCCCEEEEE
Confidence 43345566 899999999999999984
No 473
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=53.06 E-value=47 Score=31.87 Aligned_cols=138 Identities=20% Similarity=0.298 Sum_probs=77.8
Q ss_pred HHHHHHHhhcccccEEEeeC-------cccccCChhHHHHHHHHHHh------CCc---eecCCcH---HHHHHHhCCch
Q 022296 42 VLEDIFESMGQFVDGLKFSG-------GSHSLMPKPFIEEVVKRAHQ------HDV---YVSTGDW---AEHLIRNGPSA 102 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~-------GTs~l~p~~~l~eKI~l~~~------~gV---~v~~Gtl---fE~a~~qg~~~ 102 (299)
.+.-+++.+| ||++=.|= |-..-.|- .+.+.+-.++. +-. ..+.|++ -|.|+..
T Consensus 27 ~~A~~~d~ag--vD~iLVGDSlgmv~~G~~sT~~v-tld~mi~h~~aV~Rga~~~~vv~DmPf~sy~~s~e~av~n---- 99 (261)
T PF02548_consen 27 PSARIADEAG--VDIILVGDSLGMVVLGYDSTLPV-TLDEMIYHTKAVRRGAPNAFVVADMPFGSYQASPEQAVRN---- 99 (261)
T ss_dssp HHHHHHHHTT---SEEEE-TTHHHHTT--SSSTT---HHHHHHHHHHHHHH-TSSEEEEE--TTSSTSSHHHHHHH----
T ss_pred HHHHHHHHcC--CCEEEeCCcHHHheeCCCCCcCc-CHHHHHHHHHHHHhcCCCceEEecCCcccccCCHHHHHHH----
Confidence 4556777777 88887763 22222221 25555443331 111 2222544 4555444
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhc
Q 022296 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLF 182 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~ 182 (299)
-.+..|+-|.|+|-+.-|. +....|+.+.++|.-|.-.+|..-... ..++.|=
T Consensus 100 ---A~rl~ke~GadaVKlEGg~------~~~~~i~~l~~~GIPV~gHiGLtPQ~~-------~~~GGyr----------- 152 (261)
T PF02548_consen 100 ---AGRLMKEAGADAVKLEGGA------EIAETIKALVDAGIPVMGHIGLTPQSV-------HQLGGYR----------- 152 (261)
T ss_dssp ---HHHHHHTTT-SEEEEEBSG------GGHHHHHHHHHTT--EEEEEES-GGGH-------HHHTSS------------
T ss_pred ---HHHHHHhcCCCEEEeccch------hHHHHHHHHHHCCCcEEEEecCchhhe-------eccCCce-----------
Confidence 3677788999999999886 457899999999999999999853211 0011110
Q ss_pred ccCCCccchhhhhhhHHHHHHHHHccCcEEEEec
Q 022296 183 LASNPEIEVGVGINKSRRAERCLEAGADMIMIDS 216 (299)
Q Consensus 183 ~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEa 216 (299)
+.|...-+..++ ++.+++--+|||..|.+|.
T Consensus 153 ~qGk~~~~a~~l---~~~A~ale~AGaf~ivlE~ 183 (261)
T PF02548_consen 153 VQGKTAEEAEKL---LEDAKALEEAGAFAIVLEC 183 (261)
T ss_dssp -CSTSHHHHHHH---HHHHHHHHHHT-SEEEEES
T ss_pred EEecCHHHHHHH---HHHHHHHHHcCccEEeeec
Confidence 001011125667 9999999999999999998
No 474
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=52.89 E-value=77 Score=30.84 Aligned_cols=121 Identities=12% Similarity=0.109 Sum_probs=77.2
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCc-eecCC--cHHHHHHHh-C-Cc
Q 022296 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G-PS 101 (299)
Q Consensus 27 T~V~DkGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV-~v~~G--tlfE~a~~q-g-~~ 101 (299)
|.-++=|-+...++..++++++....++++..---=|.-.-|...=.++++.++++|| .++.| ++-+..+.. + +.
T Consensus 62 ~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~ 141 (375)
T PRK05628 62 TVFVGGGTPSLLGAEGLARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTH 141 (375)
T ss_pred EEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCC
Confidence 4444445432226789999999988765432211112223455556789999999999 78878 665555422 1 12
Q ss_pred ---hHHHHHHHHHHcCCCEEEec--CCcccCChhHHHHHHHHHHHcCCccc
Q 022296 102 ---AFKEYVEDCKQVGFDTIELN--VGSLEIPEETLLRYVRLVKSAGLKAK 147 (299)
Q Consensus 102 ---~~~~yl~~~k~lGF~~IEIS--dGti~i~~~~r~~lI~~~~~~G~~v~ 147 (299)
.+.+-++.+++.||+.|-++ -|.=.-+.++..+-++.+.+.|..-.
T Consensus 142 s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~~tl~~~~~l~~~~i 192 (375)
T PRK05628 142 TPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWRASLDAALEAGVDHV 192 (375)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 35556677888999855433 56556677788888888888776533
No 475
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=52.88 E-value=2.1e+02 Score=27.24 Aligned_cols=51 Identities=14% Similarity=0.081 Sum_probs=41.1
Q ss_pred cchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEE
Q 022296 189 IEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMF 245 (299)
Q Consensus 189 ~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklif 245 (299)
.+.+.| .+.++.+.++||+-|.+ |+.+.+|++..+.++++++..+.-.+.|
T Consensus 70 ~E~~~M---~~di~~~~~~GadGvV~---G~L~~dg~vD~~~~~~Li~~a~~~~vTF 120 (248)
T PRK11572 70 GEFAAM---LEDIATVRELGFPGLVT---GVLDVDGHVDMPRMRKIMAAAGPLAVTF 120 (248)
T ss_pred HHHHHH---HHHHHHHHHcCCCEEEE---eeECCCCCcCHHHHHHHHHHhcCCceEE
Confidence 347888 99999999999998777 7788888999888888887666555555
No 476
>PRK07329 hypothetical protein; Provisional
Probab=52.88 E-value=34 Score=31.53 Aligned_cols=77 Identities=14% Similarity=0.186 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHhCCc--eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh--hHHHHHHHHHHHcCC
Q 022296 69 KPFIEEVVKRAHQHDV--YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE--ETLLRYVRLVKSAGL 144 (299)
Q Consensus 69 ~~~l~eKI~l~~~~gV--~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~--~~r~~lI~~~~~~G~ 144 (299)
++.+++.++.++++|+ .+.++++.-.. ........++.|+++|...|=++...-...+ ....++++.+++.||
T Consensus 164 ~~~~~~i~~~~~~~~~~lEiNt~~~~~~~---~~~~~~~~l~~~~~~g~~~i~~gSDAH~~~~vg~~~~~a~~~l~~~g~ 240 (246)
T PRK07329 164 EPQLTRIFAKMIDNDLAFELNTKSMYLYG---NEGLYRYAIELYKQLGGKLFSIGSDAHKLEHYRYNFDDAQKLLKEHGI 240 (246)
T ss_pred HHHHHHHHHHHHHcCCeEEEECcccccCC---CCcchHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 4567788899999998 45676652111 1113466799999999876777776665544 345677888888888
Q ss_pred cccc
Q 022296 145 KAKP 148 (299)
Q Consensus 145 ~v~~ 148 (299)
+...
T Consensus 241 ~~~~ 244 (246)
T PRK07329 241 KEIA 244 (246)
T ss_pred ceEE
Confidence 7543
No 477
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=52.74 E-value=21 Score=31.27 Aligned_cols=85 Identities=18% Similarity=0.276 Sum_probs=55.0
Q ss_pred cEEEeeCcccccCChhHHHHHHHHHHhCCceecCCc--HHHHHHHhCCchHHHHHHHHHHcCCC---EEEecCCcccCCh
Q 022296 55 DGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD--WAEHLIRNGPSAFKEYVEDCKQVGFD---TIELNVGSLEIPE 129 (299)
Q Consensus 55 D~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~~Gt--lfE~a~~qg~~~~~~yl~~~k~lGF~---~IEISdGti~i~~ 129 (299)
=++|.+-||..+.| ....-++-|+++|+++ |. |+.. -.+.....+.|++.++..+.+ ++.+-+.. ..+.
T Consensus 25 viiKateG~~y~D~--~~~~~~~~a~~aGl~~--G~Yhy~~~-~~~a~~qA~~f~~~~~~~~~~~~~~lD~E~~~-~~~~ 98 (184)
T cd06525 25 VYIKATEGTTFVDS--YFNENYNGAKAAGLKV--GFYHFLVG-TSNPEEQAENFYNTIKGKKMDLKPALDVEVNF-GLSK 98 (184)
T ss_pred EEEEecCCCcccCH--hHHHHHHHHHHCCCce--EEEEEeeC-CCCHHHHHHHHHHhccccCCCCCeEEEEecCC-CCCH
Confidence 36899999998888 8999999999999844 42 3321 011112678899999988765 33443322 1233
Q ss_pred h----HHHHHHHHHHHc-CCc
Q 022296 130 E----TLLRYVRLVKSA-GLK 145 (299)
Q Consensus 130 ~----~r~~lI~~~~~~-G~~ 145 (299)
. .-.+++++++++ |.+
T Consensus 99 ~~~~~~~~~f~~~v~~~~G~~ 119 (184)
T cd06525 99 DELNDYVLRFIEEFEKLSGLK 119 (184)
T ss_pred HHHHHHHHHHHHHHHHHHCCC
Confidence 3 335677777776 665
No 478
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=52.72 E-value=1.5e+02 Score=29.14 Aligned_cols=96 Identities=14% Similarity=0.180 Sum_probs=61.5
Q ss_pred chhHHHHHHHhhcc-cccEEEeeCccccc-CChhHHHHHHHHHHhC--CceecCCcHHHHHHHhCCchHHHHHHHHHHcC
Q 022296 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSL-MPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVG 114 (299)
Q Consensus 39 g~~~l~DlLe~ag~-yID~lKfg~GTs~l-~p~~~l~eKI~l~~~~--gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lG 114 (299)
.+.++.+....+.+ =+.-+-|-.|-... .+-+.+.+.++..+++ +|.+.+|. -..++ ++.+|+.|
T Consensus 105 s~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p~i~i~~g~----------lt~e~-l~~Lk~aG 173 (371)
T PRK09240 105 DEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREYFSSVSIEVQP----------LSEEE-YAELVELG 173 (371)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCCceeccCC----------CCHHH-HHHHHHcC
Confidence 34444444443322 25666665555544 4556777777777765 23333332 12333 47899999
Q ss_pred CCEEEecCCccc------C-------ChhHHHHHHHHHHHcCCc
Q 022296 115 FDTIELNVGSLE------I-------PEETLLRYVRLVKSAGLK 145 (299)
Q Consensus 115 F~~IEISdGti~------i-------~~~~r~~lI~~~~~~G~~ 145 (299)
++.+-++--|.+ | +.++|++.|+.+++.||+
T Consensus 174 v~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~ 217 (371)
T PRK09240 174 LDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIR 217 (371)
T ss_pred CCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 999998877752 4 568999999999999997
No 479
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=52.71 E-value=44 Score=31.71 Aligned_cols=51 Identities=29% Similarity=0.309 Sum_probs=40.0
Q ss_pred CChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC
Q 022296 67 MPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI 127 (299)
Q Consensus 67 ~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i 127 (299)
-..+.|++.|+.+|+.||.|+. | =+| -.+-++.++++|-|+||+-.|...-
T Consensus 107 ~~~~~l~~~i~~l~~~gI~VSL---F-----iDP--~~~qi~~A~~~GAd~VELhTG~YA~ 157 (237)
T TIGR00559 107 RLKDKLCELVKRFHAAGIEVSL---F-----IDA--DKDQISAAAEVGADRIEIHTGPYAN 157 (237)
T ss_pred hCHHHHHHHHHHHHHCCCEEEE---E-----eCC--CHHHHHHHHHhCcCEEEEechhhhc
Confidence 3466899999999999999984 1 222 2455788999999999999998743
No 480
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=52.63 E-value=28 Score=33.79 Aligned_cols=41 Identities=29% Similarity=0.471 Sum_probs=32.6
Q ss_pred HHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccCCCceEEecC
Q 022296 198 SRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 248 (299)
Q Consensus 198 i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~~eklifEAP 248 (299)
+++++..+++|||.||.+ |+..+.+.+.++.+. ++++.||.
T Consensus 207 leea~~a~~agaDiImLD---------nmspe~l~~av~~~~-~~~~leaS 247 (290)
T PRK06559 207 LAAAEEAAAAGADIIMLD---------NMSLEQIEQAITLIA-GRSRIECS 247 (290)
T ss_pred HHHHHHHHHcCCCEEEEC---------CCCHHHHHHHHHHhc-CceEEEEE
Confidence 677799999999999995 667777777777555 46778877
No 481
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=52.63 E-value=32 Score=33.39 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=49.9
Q ss_pred cCChhHHHHHHHHHHhCCc-eecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcC
Q 022296 66 LMPKPFIEEVVKRAHQHDV-YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAG 143 (299)
Q Consensus 66 l~p~~~l~eKI~l~~~~gV-~v~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G 143 (299)
-++.+.+++.|+.+++.|+ .|.. || |-.+ +. .+.+.++++++.|+...=++||++ |+.+ .++.+++.|
T Consensus 45 ~~~~e~~~~ii~~~~~~g~~~v~~~GG--EPll-~~--~~~~il~~~~~~g~~~~i~TNG~l-l~~~----~~~~L~~~g 114 (378)
T PRK05301 45 ELSTEEWIRVLREARALGALQLHFSGG--EPLL-RK--DLEELVAHARELGLYTNLITSGVG-LTEA----RLAALKDAG 114 (378)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEECC--ccCC-ch--hHHHHHHHHHHcCCcEEEECCCcc-CCHH----HHHHHHHcC
Confidence 4666778999999999997 3433 53 2222 22 588999999999998887889875 5543 456667777
Q ss_pred Cc
Q 022296 144 LK 145 (299)
Q Consensus 144 ~~ 145 (299)
+.
T Consensus 115 ~~ 116 (378)
T PRK05301 115 LD 116 (378)
T ss_pred CC
Confidence 65
No 482
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=52.59 E-value=41 Score=28.52 Aligned_cols=91 Identities=12% Similarity=-0.018 Sum_probs=64.3
Q ss_pred HHHHHHH-hhcccccEEEeeCcccccCChhHHHHHHHHHHhCCc-e-ecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 022296 42 VLEDIFE-SMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-Y-VSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (299)
Q Consensus 42 ~l~DlLe-~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV-~-v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~I 118 (299)
...++-. ..+++| +-|-.+ +++++.+ |.+ .+++.|| . +-.|-..+.|+.+- ...+.++||+.+
T Consensus 52 ~~~~l~~~~~~~~v-i~K~~~--saf~~t~-L~~---~L~~~gi~~lii~G~~T~~CV~~T-------a~~a~~~g~~v~ 117 (157)
T cd01012 52 TVPELREVFPDAPV-IEKTSF--SCWEDEA-FRK---ALKATGRKQVVLAGLETHVCVLQT-------ALDLLEEGYEVF 117 (157)
T ss_pred chHHHHhhCCCCCc-eecccc--cCcCCHH-HHH---HHHhcCCCEEEEEEeeccHHHHHH-------HHHHHHCCCEEE
Confidence 3444443 345544 568774 4445433 444 4568899 3 44587889998885 455667899999
Q ss_pred EecCCcccCChhHHHHHHHHHHHcCCcc
Q 022296 119 ELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (299)
Q Consensus 119 EISdGti~i~~~~r~~lI~~~~~~G~~v 146 (299)
=++|++-+.+++.....++.++..|-.+
T Consensus 118 v~~Da~as~~~~~h~~al~~~~~~~~~v 145 (157)
T cd01012 118 VVADACGSRSKEDHELALARMRQAGAVL 145 (157)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 9999999999999999999988865443
No 483
>PRK06852 aldolase; Validated
Probab=52.58 E-value=1.7e+02 Score=28.67 Aligned_cols=152 Identities=10% Similarity=0.034 Sum_probs=83.2
Q ss_pred EEEeeCcccccC----Ch-hHHHHHHHHHHhCC-----------ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 022296 56 GLKFSGGSHSLM----PK-PFIEEVVKRAHQHD-----------VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (299)
Q Consensus 56 ~lKfg~GTs~l~----p~-~~l~eKI~l~~~~g-----------V~v~~GtlfE~a~~qg~~~~~~yl~~~k~lGF~~IE 119 (299)
++|+..+|+... ++ ..+---++-|-+.| +.+|+|.=.|.--.+ .+-+-.++|+++|+-.|-
T Consensus 96 Ilkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~---~l~~v~~ea~~~GlPll~ 172 (304)
T PRK06852 96 LVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLS---EAAQIIYEAHKHGLIAVL 172 (304)
T ss_pred EEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHH---HHHHHHHHHHHhCCcEEE
Confidence 578988777664 11 12333344455544 588999777765555 578889999999999985
Q ss_pred --------ecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccc-ccccccccCCCCccchhcccCCCccc
Q 022296 120 --------LNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRD-RAFGAYVARAPRSTDKLFLASNPEIE 190 (299)
Q Consensus 120 --------ISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (299)
|+|+. +++.-.-+.|.+.+.|=-+ +|-.....-.++| ..|...+... ..--+-.||-...+
T Consensus 173 ~~yprG~~i~~~~---~~~~ia~aaRiaaELGADI-----VKv~y~~~~~~g~~e~f~~vv~~~--g~vpVviaGG~k~~ 242 (304)
T PRK06852 173 WIYPRGKAVKDEK---DPHLIAGAAGVAACLGADF-----VKVNYPKKEGANPAELFKEAVLAA--GRTKVVCAGGSSTD 242 (304)
T ss_pred EeeccCcccCCCc---cHHHHHHHHHHHHHHcCCE-----EEecCCCcCCCCCHHHHHHHHHhC--CCCcEEEeCCCCCC
Confidence 22222 2344455556666655220 2211110000000 1122222111 00001112222224
Q ss_pred hhhhhhhHHHHHHHHH-ccCcEEEEeccccccCCC
Q 022296 191 VGVGINKSRRAERCLE-AGADMIMIDSDDVCKHAD 224 (299)
Q Consensus 191 ~~~~~~~i~~~~~dLe-AGA~~VIiEargi~d~~G 224 (299)
.+++ ++.++..++ +||.=|++ +|.||....
T Consensus 243 ~~e~---L~~v~~ai~~aGa~Gv~~-GRNIfQ~~~ 273 (304)
T PRK06852 243 PEEF---LKQLYEQIHISGASGNAT-GRNIHQKPL 273 (304)
T ss_pred HHHH---HHHHHHHHHHcCCceeee-chhhhcCCC
Confidence 5677 899999999 99988877 888888763
No 484
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=52.52 E-value=94 Score=30.76 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=19.8
Q ss_pred chhhhhhhHHHHHHHHHccCcEEEEecc
Q 022296 190 EVGVGINKSRRAERCLEAGADMIMIDSD 217 (299)
Q Consensus 190 ~~~~~~~~i~~~~~dLeAGA~~VIiEar 217 (299)
+.++. ++.++..-++|+|+|-|=++
T Consensus 250 ~~e~~---~~~~~~l~~~gvD~l~vs~g 274 (382)
T cd02931 250 DLEEG---LKAAKILEEAGYDALDVDAG 274 (382)
T ss_pred CHHHH---HHHHHHHHHhCCCEEEeCCC
Confidence 36777 77888888899999988654
No 485
>PRK11059 regulatory protein CsrD; Provisional
Probab=52.49 E-value=34 Score=35.62 Aligned_cols=79 Identities=15% Similarity=0.178 Sum_probs=50.5
Q ss_pred CCCCceeEec-CCCCCCcchhHHHHHHHhhcccccEEEeeCcccc-----cCChhHHHHHHHHHHhCCceecC-CcHHHH
Q 022296 22 RRFGVTEMRS-PHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHS-----LMPKPFIEEVVKRAHQHDVYVST-GDWAEH 94 (299)
Q Consensus 22 R~~GlT~V~D-kGl~~~~g~~~l~DlLe~ag~yID~lKfg~GTs~-----l~p~~~l~eKI~l~~~~gV~v~~-GtlfE~ 94 (299)
|..|.+..+| -|.+.. +..++.++ -+|++|+--.-.. -.+...++..+++||+.|+.|.- |
T Consensus 543 ~~~G~~iaiddfG~g~~-s~~~L~~l------~~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~~~~i~viAeg----- 610 (640)
T PRK11059 543 RGLGCRLAVDQAGLTVV-STSYIKEL------NVELIKLHPSLVRNIHKRTENQLFVRSLVGACAGTETQVFATG----- 610 (640)
T ss_pred HHCCCEEEEECCCCCcc-cHHHHHhC------CCCEEEECHHHHhhhhcCchhHHHHHHHHHHHHHCCCeEEEEE-----
Confidence 5668888885 455334 44444443 3999998753221 12234688999999999998875 5
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEE
Q 022296 95 LIRNGPSAFKEYVEDCKQVGFDTI 118 (299)
Q Consensus 95 a~~qg~~~~~~yl~~~k~lGF~~I 118 (299)
.. =++-++.++++|||++
T Consensus 611 --VE----t~~~~~~l~~lGvd~~ 628 (640)
T PRK11059 611 --VE----SREEWQTLQELGVSGG 628 (640)
T ss_pred --eC----CHHHHHHHHHhCCCee
Confidence 01 1233456778888875
No 486
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=52.37 E-value=2.8e+02 Score=28.46 Aligned_cols=161 Identities=17% Similarity=0.327 Sum_probs=104.5
Q ss_pred HHHHhhcccccEEEe--eCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhC--------------Cc-hHHHHH
Q 022296 45 DIFESMGQFVDGLKF--SGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNG--------------PS-AFKEYV 107 (299)
Q Consensus 45 DlLe~ag~yID~lKf--g~GTs~l~p~~~l~eKI~l~~~~gV~v~~GtlfE~a~~qg--------------~~-~~~~yl 107 (299)
+-|..-|+-+|=+-| =+||+.-.|++.=..-|.-+|++=---..-+.-|.+.... |+ .++.-+
T Consensus 160 ~QLk~LGHsvDKVE~i~MGGTFMsLPe~YRd~FI~nLHdALSGhts~~v~EAv~yse~s~tKCiGiTIETRPDyC~~~Hl 239 (554)
T KOG2535|consen 160 EQLKQLGHSVDKVEFIVMGGTFMSLPEEYRDYFIRNLHDALSGHTSANVEEAVKYSERSLTKCIGITIETRPDYCLKRHL 239 (554)
T ss_pred HHHHHhCCccceeEEEEecceeecChHHHHHHHHHHHHHHhcCCCccCHHHHHHhhhhccceeeeEEeecCcccchhhhH
Confidence 456778999997765 4799999999977778888876521100112334332111 11 256667
Q ss_pred HHHHHcCCCEEEecCCcc--cCC--------hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCc
Q 022296 108 EDCKQVGFDTIELNVGSL--EIP--------EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (299)
Q Consensus 108 ~~~k~lGF~~IEISdGti--~i~--------~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~ 177 (299)
...-.+|++.+||-.-++ ++. -..-|+-...+|+.||||.+..-.. +..||-+.|
T Consensus 240 ~~ML~YGCTRlEiGVQS~YEDVARDTNRGHTV~aVce~F~laKDaG~KvV~HMMPd--LPNVg~eRD------------- 304 (554)
T KOG2535|consen 240 SDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDAGFKVVAHMMPD--LPNVGMERD------------- 304 (554)
T ss_pred HHHHhcCCceEEeccchhHHHhhhcccCCccHHHHHHHhhhhhccCceeehhhCCC--CCCCchhhh-------------
Confidence 888889999999977665 222 2334677888999999987754332 334443333
Q ss_pred cchhcccCCCccchhhhhhhHHHHHHHHHccCcE---------EEEeccccccC--CCccc-------HHHHHHHHhccC
Q 022296 178 TDKLFLASNPEIEVGVGINKSRRAERCLEAGADM---------IMIDSDDVCKH--ADSLR-------ADIIAKVIGRLG 239 (299)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~---------VIiEargi~d~--~G~~r-------~d~i~~ii~~l~ 239 (299)
|+|.+..+|+-|.. ..|-+-|+|+- .|+.+ -|+++.|++-+|
T Consensus 305 --------------------ieqF~E~FenP~FR~DGLKiYPTLVIrGTGLyELWKtgrYk~Y~p~~LvdlvArILalVP 364 (554)
T KOG2535|consen 305 --------------------IEQFKEYFENPAFRPDGLKIYPTLVIRGTGLYELWKTGRYKSYSPSALVDLVARILALVP 364 (554)
T ss_pred --------------------HHHHHHHhcCcCcCCCcceecceEEEecccHHHHHhcCCcccCCHHHHHHHHHHHHhhCC
Confidence 77778888887753 45667677653 44444 578888888887
Q ss_pred C
Q 022296 240 L 240 (299)
Q Consensus 240 ~ 240 (299)
+
T Consensus 365 P 365 (554)
T KOG2535|consen 365 P 365 (554)
T ss_pred c
Confidence 4
No 487
>PRK06846 putative deaminase; Validated
Probab=52.29 E-value=33 Score=33.67 Aligned_cols=75 Identities=11% Similarity=0.137 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHhCCceecC--C-cHHHHHHHhCCchHHHHHHHHHHcCCCE-EEecCCcc--cCChhHHHHHHHHHHHc
Q 022296 69 KPFIEEVVKRAHQHDVYVST--G-DWAEHLIRNGPSAFKEYVEDCKQVGFDT-IELNVGSL--EIPEETLLRYVRLVKSA 142 (299)
Q Consensus 69 ~~~l~eKI~l~~~~gV~v~~--G-tlfE~a~~qg~~~~~~yl~~~k~lGF~~-IEISdGti--~i~~~~r~~lI~~~~~~ 142 (299)
++.+++-.+++++||+++.. . +.-|. + ..+++.++.+++.|+.. +-++-..- .++.++..++++++++.
T Consensus 205 ~~~l~~~~~lA~~~g~~v~~Hv~e~~~~~---~--~~~~~~~~~~~~~gl~~~v~~~H~~~l~~~~~~e~~~li~~la~~ 279 (410)
T PRK06846 205 EKSLDTMFQIAVDFNKGVDIHLHDTGPLG---V--ATIKYLVETTEEAQWKGKVTISHAFALGDLNEEEVEELAERLAAQ 279 (410)
T ss_pred HHHHHHHHHHHHHhCCCcEEEECCCCChh---H--HHHHHHHHHHHHhCCCCCEEEEecchhhcCCHHHHHHHHHHHHHc
Confidence 34588888888888887654 2 22111 1 14566778888888733 44444432 46888888999999999
Q ss_pred CCcccc
Q 022296 143 GLKAKP 148 (299)
Q Consensus 143 G~~v~~ 148 (299)
|..|.+
T Consensus 280 g~~v~~ 285 (410)
T PRK06846 280 GISITS 285 (410)
T ss_pred CCeEEE
Confidence 987653
No 488
>PRK12568 glycogen branching enzyme; Provisional
Probab=52.23 E-value=28 Score=37.90 Aligned_cols=50 Identities=20% Similarity=0.307 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCCCEEEecC----------Ccc-----c-----CChhHHHHHHHHHHHcCCcccceeee
Q 022296 103 FKEYVEDCKQVGFDTIELNV----------GSL-----E-----IPEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISd----------Gti-----~-----i~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
.++.+.++|+|||++||++= |.- . =+.++..++|+.+.++|++|+-.+-.
T Consensus 272 a~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 272 AEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 45568899999999999853 111 1 13568899999999999999988755
No 489
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=52.20 E-value=75 Score=29.71 Aligned_cols=17 Identities=41% Similarity=0.536 Sum_probs=15.0
Q ss_pred HHHHHHHHHccCcEEEE
Q 022296 198 SRRAERCLEAGADMIMI 214 (299)
Q Consensus 198 i~~~~~dLeAGA~~VIi 214 (299)
.+++++-+++|||.|++
T Consensus 191 ~e~a~~l~~aGAD~VVV 207 (223)
T TIGR01768 191 VEKAREMAEAGADTIVT 207 (223)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 56678999999999999
No 490
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=52.17 E-value=29 Score=33.53 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=34.7
Q ss_pred HHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhccC--CCceEEecC
Q 022296 198 SRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG--LEKTMFEAT 248 (299)
Q Consensus 198 i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l~--~eklifEAP 248 (299)
+++++..+++|||.||. +|+..+.+.+.+..+. -.++..||.
T Consensus 199 leqa~ea~~agaDiI~L---------Dn~~~e~l~~av~~~~~~~~~~~leaS 242 (284)
T PRK06096 199 PKEAIAALRAQPDVLQL---------DKFSPQQATEIAQIAPSLAPHCTLSLA 242 (284)
T ss_pred HHHHHHHHHcCCCEEEE---------CCCCHHHHHHHHHHhhccCCCeEEEEE
Confidence 67779999999999999 5788888888887664 257788887
No 491
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=52.16 E-value=1.2e+02 Score=34.66 Aligned_cols=102 Identities=21% Similarity=0.193 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchh
Q 022296 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKL 181 (299)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~ 181 (299)
-++.|++.+.+-|+|.+-|=|..=+++.=. ..|+.+++.|..+- ..+-.-. ++ -| |. +..
T Consensus 626 vv~~f~~~~~~~GidifrifD~lN~~~n~~--~~~~~~~~~g~~~~--~~i~yt~-~~---~d--------~~--~~~-- 685 (1143)
T TIGR01235 626 VVKYFVKQAAQGGIDIFRVFDSLNWVENMR--VGMDAVAEAGKVVE--AAICYTG-DI---LD--------PA--RPK-- 685 (1143)
T ss_pred HHHHHHHHHHHcCCCEEEECccCcCHHHHH--HHHHHHHHcCCEEE--EEEEEec-cC---CC--------cC--CCC--
Confidence 589999999999999999999888776654 58999999998654 4442111 10 11 11 000
Q ss_pred cccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCCCcccHHHHHHHHhcc
Q 022296 182 FLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 238 (299)
Q Consensus 182 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~G~~r~d~i~~ii~~l 238 (299)
-+++.+ ++.++.-.++||+.| .|.|-.|-.+...+.++++.+
T Consensus 686 -------~~l~y~---~~~ak~l~~~Gad~I-----~ikDt~Gll~P~~~~~Lv~~l 727 (1143)
T TIGR01235 686 -------YDLKYY---TNLAVELEKAGAHIL-----GIKDMAGLLKPAAAKLLIKAL 727 (1143)
T ss_pred -------CCHHHH---HHHHHHHHHcCCCEE-----EECCCcCCcCHHHHHHHHHHH
Confidence 126667 888899999999866 467888888887777777554
No 492
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=52.05 E-value=1.1e+02 Score=30.34 Aligned_cols=146 Identities=13% Similarity=0.234 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhCCceecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCE-EEecCCcccCCh----hHHHHH-HHHHHHcC
Q 022296 71 FIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDT-IELNVGSLEIPE----ETLLRY-VRLVKSAG 143 (299)
Q Consensus 71 ~l~eKI~l~~~~gV~v~~-GtlfE~a~~qg~~~~~~yl~~~k~lGF~~-IEISdGti~i~~----~~r~~l-I~~~~~~G 143 (299)
.+++.++-|++++--|.- -.+ +.+.+...++.|.+++-.. +++|.+++.-.. ....+. ...+++.+
T Consensus 11 ~~k~lL~~A~~~~yAV~AfN~~-------n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~ 83 (321)
T PRK07084 11 NTREMFAKAVKGGYAIPAYNFN-------NMEQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEYAKELG 83 (321)
T ss_pred CHHHHHHHHHHCCceEEEEEeC-------CHHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHHHHHcC
Confidence 488888888888864332 211 1124566788888888775 588888876433 222222 23344434
Q ss_pred CcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEeccccccCC
Q 022296 144 LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDSDDVCKHA 223 (299)
Q Consensus 144 ~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEargi~d~~ 223 (299)
+.| -|.+..... .+ .+.++++|++|-+-||+++.-+-..+
T Consensus 84 ~~V--PV~lHLDHg-----------------------------~~---------~e~i~~ai~~GftSVMiD~S~lp~ee 123 (321)
T PRK07084 84 CPI--PIVLHLDHG-----------------------------DS---------FELCKDCIDSGFSSVMIDGSHLPYEE 123 (321)
T ss_pred CCC--cEEEECCCC-----------------------------CC---------HHHHHHHHHcCCCEEEeeCCCCCHHH
Confidence 333 133421110 01 45569999999999999997542222
Q ss_pred CcccHHHHHHHHhccC------------CC-ceEEe---cCCchhHHHHHHHhCCC
Q 022296 224 DSLRADIIAKVIGRLG------------LE-KTMFE---ATNPRTSEWFIRRYGPK 263 (299)
Q Consensus 224 G~~r~d~i~~ii~~l~------------~e-klifE---AP~k~qQ~~fI~~fG~~ 263 (299)
.--.+-.+-+++...| .+ .+.-+ =.+|++=..|+++-|.|
T Consensus 124 NI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD 179 (321)
T PRK07084 124 NVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVD 179 (321)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHhCCC
Confidence 1112334444554422 11 11111 12678889999998887
No 493
>PLN02826 dihydroorotate dehydrogenase
Probab=52.02 E-value=1.1e+02 Score=31.04 Aligned_cols=80 Identities=23% Similarity=0.287 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHcC--CCEEEecCCcccC-------ChhHHHHHHHHHHHc--CC----c-ccceeeeecCCCCCCCcccc
Q 022296 102 AFKEYVEDCKQVG--FDTIELNVGSLEI-------PEETLLRYVRLVKSA--GL----K-AKPKFAVMFNKSDIPSDRDR 165 (299)
Q Consensus 102 ~~~~yl~~~k~lG--F~~IEISdGti~i-------~~~~r~~lI~~~~~~--G~----~-v~~E~gvK~~~sevg~~~d~ 165 (299)
..++|.+-++.++ -|++||+-.+-.. ..+...++++.+++. .+ . -+| +-+| .
T Consensus 202 ~~~Dy~~~~~~~~~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~P-v~vK--l--------- 269 (409)
T PLN02826 202 AAADYVQGVRALSQYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPP-LLVK--I--------- 269 (409)
T ss_pred cHHHHHHHHHHHhhhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCc-eEEe--c---------
Confidence 6899999999998 9999998554332 234445666666532 00 0 133 3333 1
Q ss_pred cccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHccCcEEEEec
Q 022296 166 AFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAGADMIMIDS 216 (299)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~VIiEa 216 (299)
+| +++.+.+ .+-++..+++||+-||+--
T Consensus 270 ------aP--------------dl~~~di---~~ia~~a~~~G~dGIi~~N 297 (409)
T PLN02826 270 ------AP--------------DLSKEDL---EDIAAVALALGIDGLIISN 297 (409)
T ss_pred ------CC--------------CCCHHHH---HHHHHHHHHcCCCEEEEEc
Confidence 12 1223455 6667889999999998865
No 494
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=51.73 E-value=2.3e+02 Score=27.32 Aligned_cols=196 Identities=15% Similarity=0.177 Sum_probs=114.7
Q ss_pred HHHHHHHhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceec----CCc--H---HHH------HHHhC-----C-
Q 022296 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGD--W---AEH------LIRNG-----P- 100 (299)
Q Consensus 42 ~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~----~Gt--l---fE~------a~~qg-----~- 100 (299)
.++++|..|-+- +++-|.+-+++-+.++.-|+-|.+.+.++- +|+ + ++. ++.+. |
T Consensus 5 ~~k~iL~~A~~~----~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV 80 (288)
T TIGR00167 5 DVKELLQDAKEE----GYAIPAFNINNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPV 80 (288)
T ss_pred cHHHHHHHHHHC----CceEEEEEECCHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcE
Confidence 455666555432 556677777777777777777777665432 221 1 111 11111 0
Q ss_pred ------chHHHHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 022296 101 ------SAFKEYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 172 (299)
Q Consensus 101 ------~~~~~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~ 172 (299)
..=.+++..|-+.||+.|=+..-.+++.+-- =.++++.++..|.-|--|+|.=-+ +.|. ....
T Consensus 81 ~lHLDHg~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg------~e~~---~~~~ 151 (288)
T TIGR00167 81 ALHLDHGASEEDCAQAVKAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGG------EEDG---VSVA 151 (288)
T ss_pred EEECCCCCCHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccC------ccCC---cccc
Confidence 0123778888999999999976665443322 236778888899999999998321 1120 0000
Q ss_pred CCCCccchhcccCCCccchhhhhhhHHHHHHHHH-ccCcEEEEecc---ccccCCCc-ccHHHHHHHHhccCCCceEEec
Q 022296 173 RAPRSTDKLFLASNPEIEVGVGINKSRRAERCLE-AGADMIMIDSD---DVCKHADS-LRADIIAKVIGRLGLEKTMFEA 247 (299)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLe-AGA~~VIiEar---gi~d~~G~-~r~d~i~~ii~~l~~eklifEA 247 (299)
.. .+.+| + | ++++++++ -|.|.+-|==- |+|...-. ++.+.+++|-+.++.-=++==+
T Consensus 152 ~~--~~~~T-----~---p-------eea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~vPLVlHGg 214 (288)
T TIGR00167 152 DE--SALYT-----D---P-------EEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVNLPLVLHGG 214 (288)
T ss_pred cc--cccCC-----C---H-------HHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCC
Confidence 00 01111 1 3 45588886 49998877543 99988667 9999999998877633222222
Q ss_pred C-Cc-hhHHHHHHHhCCCcccc
Q 022296 248 T-NP-RTSEWFIRRYGPKVNLF 267 (299)
Q Consensus 248 P-~k-~qQ~~fI~~fG~~VNLg 267 (299)
. .+ +|....|+.==.+||++
T Consensus 215 SG~~~e~~~~ai~~Gi~KiNi~ 236 (288)
T TIGR00167 215 SGIPDEEIKKAISLGVVKVNID 236 (288)
T ss_pred CCCCHHHHHHHHHcCCeEEEcC
Confidence 2 23 34444555444567776
No 495
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=51.70 E-value=22 Score=34.64 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=45.4
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccccCChhHH--HHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCC
Q 022296 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFI--EEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGF 115 (299)
Q Consensus 39 g~~~l~DlLe~ag~yID~lKfg~GTs~l~p~~~l--~eKI~l~~~~gV~v~~G-tlfE~a~~qg~~~~~~yl~~~k~lGF 115 (299)
.+..++.+++.++ |++|+= .+-| |.. ++.|+.++++|+.|+.| +...+ ++ ++.+.+.|.
T Consensus 147 ~~~~~~~~~~~~~---~~ik~~----tlaP-E~~~~~~~i~~~~~~gi~v~~GH~~a~~---------~~-~~~a~~~G~ 208 (374)
T cd00854 147 DPEELKKWLEAAG---GLIKLV----TLAP-ELDGALELIRYLVERGIIVSIGHSDATY---------EQ-AVAAFEAGA 208 (374)
T ss_pred CHHHHHHHHHhcC---CCEEEE----EECC-CCCChHHHHHHHHHCCeEEEeeCCcCCH---------HH-HHHHHHcCC
Confidence 3456677776544 888885 4555 445 89999999999999987 54321 11 233345677
Q ss_pred CEEEec-CCcccCCh
Q 022296 116 DTIELN-VGSLEIPE 129 (299)
Q Consensus 116 ~~IEIS-dGti~i~~ 129 (299)
+.+|=- ++.-.+.+
T Consensus 209 ~~~tH~~n~m~~~~~ 223 (374)
T cd00854 209 THVTHLFNAMSPLHH 223 (374)
T ss_pred CeeeECCCCCCCcCC
Confidence 777644 33333443
No 496
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=51.64 E-value=49 Score=32.74 Aligned_cols=21 Identities=19% Similarity=0.531 Sum_probs=16.8
Q ss_pred HHHHHHHHcCCCEEEecCCcc
Q 022296 105 EYVEDCKQVGFDTIELNVGSL 125 (299)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti 125 (299)
++.+.+.+.|.|.|+||.|+.
T Consensus 256 ~~~~~l~~~gvD~l~vs~g~~ 276 (382)
T cd02931 256 KAAKILEEAGYDALDVDAGSY 276 (382)
T ss_pred HHHHHHHHhCCCEEEeCCCCC
Confidence 455666677999999999974
No 497
>PRK08444 hypothetical protein; Provisional
Probab=51.56 E-value=2.1e+02 Score=28.29 Aligned_cols=100 Identities=14% Similarity=0.190 Sum_probs=67.3
Q ss_pred ccEEEeeCcccccCChhHHHHHHHHHHhC--CceecCCcHHHHHHHhC--CchHHHHHHHHHHcCCCEEEec-----C--
Q 022296 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNG--PSAFKEYVEDCKQVGFDTIELN-----V-- 122 (299)
Q Consensus 54 ID~lKfg~GTs~l~p~~~l~eKI~l~~~~--gV~v~~GtlfE~a~~qg--~~~~~~yl~~~k~lGF~~IEIS-----d-- 122 (299)
+.=+=+-+|-..-.+-+.+.+-++..|+. +|.++.=|..|+.+... .-..++.++..|+.|.+.+--. +
T Consensus 97 ~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~~~~ 176 (353)
T PRK08444 97 IKEVHIVSAHNPNYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEE 176 (353)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcccCCCCCchhcCHH
Confidence 33333444544445667788888888875 46555446777665442 1258899999999999876431 1
Q ss_pred -----CcccCChhHHHHHHHHHHHcCCcccceeeeecC
Q 022296 123 -----GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFN 155 (299)
Q Consensus 123 -----Gti~i~~~~r~~lI~~~~~~G~~v~~E~gvK~~ 155 (299)
-.-..+.++|.++++.+++.|+++-+ |.-++
T Consensus 177 vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~s--g~l~G 212 (353)
T PRK08444 177 VRKKICKGKVSSERWLEIHKYWHKKGKMSNA--TMLFG 212 (353)
T ss_pred HHhhhCCCCCCHHHHHHHHHHHHHcCCCccc--eeEEe
Confidence 12367779999999999999999866 44444
No 498
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=51.50 E-value=1e+02 Score=27.38 Aligned_cols=87 Identities=21% Similarity=0.168 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccCCCCccchhcccCCCccchhhhhhhHHHHHHHHHcc
Q 022296 129 EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTDKLFLASNPEIEVGVGINKSRRAERCLEAG 208 (299)
Q Consensus 129 ~~~r~~lI~~~~~~G~~v~~E~gvK~~~sevg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAG 208 (299)
...+..++..+...|..+.+..+...+.... ..+ + ...- .+.++..|+.|
T Consensus 85 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~--------~-----------------~~~~---~~~i~~~l~~~ 134 (242)
T PF00696_consen 85 DALLDEIVSAGERLGAHAVGLSLSDGGISAA--KRD--------A-----------------REVD---KEAIRELLEQG 134 (242)
T ss_dssp HHHHHHHHHHHHHCTHHEEEHHHTGGTEEEE--EEE--------S-----------------SEEH---HHHHHHHHHTT
T ss_pred chhHHHHHHhhhhhhHHHHhhhhhcccchhh--hhh--------h-----------------hhhH---HHHHHHHHHCC
Confidence 5566678888888888776666553221100 000 0 0011 45568888886
Q ss_pred CcEEEEeccccccCCC------cccHHHHHHHH-hccCCCceEEe
Q 022296 209 ADMIMIDSDDVCKHAD------SLRADIIAKVI-GRLGLEKTMFE 246 (299)
Q Consensus 209 A~~VIiEargi~d~~G------~~r~d~i~~ii-~~l~~eklifE 246 (299)
..+|+=+-..++.+| ++..|.++..+ ..++.++++|=
T Consensus 135 -~ipVv~g~~~~~~~g~~~~~~~~~sD~~A~~lA~~l~A~~li~~ 178 (242)
T PF00696_consen 135 -IIPVVSGFAGIDDDGEVTTLGNVSSDYIAALLAAALGADKLIFL 178 (242)
T ss_dssp -SEEEEESEEEEETTSTEEEEEEETHHHHHHHHHHHTTCSEEEEE
T ss_pred -CEEEEeCCcccCCCCCcccCCCCCHHHHHHHHHHHhCchhhhhh
Confidence 677776665455554 55788776665 77999988763
No 499
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=51.41 E-value=28 Score=35.98 Aligned_cols=50 Identities=24% Similarity=0.216 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCCCEEEecC---------Ccc-----cC-----ChhHHHHHHHHHHHcCCcccceeee
Q 022296 103 FKEYVEDCKQVGFDTIELNV---------GSL-----EI-----PEETLLRYVRLVKSAGLKAKPKFAV 152 (299)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISd---------Gti-----~i-----~~~~r~~lI~~~~~~G~~v~~E~gv 152 (299)
+.+-++++++|||++|.++- |.- .+ +.++..++|+.|+++|++|.-.+-.
T Consensus 29 i~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~ 97 (543)
T TIGR02403 29 IIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVF 97 (543)
T ss_pred HHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 44456777888888887753 211 11 2378999999999999999988755
No 500
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=51.31 E-value=29 Score=37.18 Aligned_cols=94 Identities=16% Similarity=0.084 Sum_probs=57.3
Q ss_pred HhhcccccEEEeeCcccccCChhHHHHHHHHHHhCCceec---CCcHHH---HHHHhCCchHHHHHHHHHHcCCCEEEec
Q 022296 48 ESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS---TGDWAE---HLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (299)
Q Consensus 48 e~ag~yID~lKfg~GTs~l~p~~~l~eKI~l~~~~gV~v~---~GtlfE---~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (299)
.+++.-+|...+-|..+.- . ...+-...+ .|-+| .|+|-- .=+.+ ..++-+.+|+++||++||+-
T Consensus 115 ~~aS~v~~~~~y~W~d~~~-~---~~~~~~~~e--~~vIYElHvGs~~~~~~~~~~e---~a~~llpYl~elG~T~IELM 185 (628)
T COG0296 115 HTASQVVDLPDYEWQDERW-D---RAWRGRFWE--PIVIYELHVGSFTPDRFLGYFE---LAIELLPYLKELGITHIELM 185 (628)
T ss_pred CCcceecCCCCcccccccc-c---ccccCCCCC--CceEEEEEeeeccCCCCcCHHH---HHHHHhHHHHHhCCCEEEEc
Confidence 3455555555566664433 1 122222223 44444 487643 11122 35677899999999999985
Q ss_pred C-------------Ccc-------cCChhHHHHHHHHHHHcCCccccee
Q 022296 122 V-------------GSL-------EIPEETLLRYVRLVKSAGLKAKPKF 150 (299)
Q Consensus 122 d-------------Gti-------~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (299)
- |+. ==++++..++|..+.++|+-|+=.+
T Consensus 186 Pv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~ 234 (628)
T COG0296 186 PVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDW 234 (628)
T ss_pred ccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 2 111 1257899999999999999987554
Done!