Query 022297
Match_columns 299
No_of_seqs 146 out of 960
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 02:27:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022297.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022297hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02821 1-hydroxy-2-methyl-2- 100.0 2.6E-85 5.6E-90 643.6 29.5 284 1-286 81-383 (460)
2 PRK13371 4-hydroxy-3-methylbut 100.0 5.4E-80 1.2E-84 598.0 28.5 277 1-285 14-308 (387)
3 PRK12360 4-hydroxy-3-methylbut 100.0 2.7E-70 5.9E-75 513.3 24.4 216 25-284 1-228 (281)
4 COG0761 lytB 4-Hydroxy-3-methy 100.0 1.3E-69 2.7E-74 506.5 24.3 219 24-285 1-232 (294)
5 PRK01045 ispH 4-hydroxy-3-meth 100.0 2.9E-69 6.3E-74 509.9 25.2 218 25-285 1-230 (298)
6 TIGR00216 ispH_lytB (E)-4-hydr 100.0 2.9E-69 6.2E-74 506.2 24.3 215 26-285 1-228 (280)
7 PF02401 LYTB: LytB protein; 100.0 3.1E-69 6.7E-74 506.3 17.4 216 27-285 1-229 (281)
8 PRK00087 4-hydroxy-3-methylbut 100.0 7.7E-64 1.7E-68 513.2 24.8 214 25-285 1-226 (647)
9 PF02401 LYTB: LytB protein; 96.9 0.035 7.6E-07 53.1 15.0 171 35-243 93-281 (281)
10 TIGR00216 ispH_lytB (E)-4-hydr 95.9 0.011 2.3E-07 56.6 5.0 89 182-276 155-266 (280)
11 PRK01045 ispH 4-hydroxy-3-meth 95.5 0.18 3.9E-06 48.7 11.7 171 35-243 95-282 (298)
12 PRK00087 4-hydroxy-3-methylbut 94.6 0.041 8.8E-07 57.8 4.7 88 182-277 155-265 (647)
13 PRK13371 4-hydroxy-3-methylbut 94.5 0.028 6.1E-07 56.1 2.9 94 182-276 226-364 (387)
14 PRK12360 4-hydroxy-3-methylbut 93.6 0.78 1.7E-05 44.0 10.8 170 35-242 98-280 (281)
15 COG0761 lytB 4-Hydroxy-3-methy 92.1 0.099 2.1E-06 50.4 2.4 74 183-260 160-256 (294)
16 PLN02821 1-hydroxy-2-methyl-2- 90.5 0.2 4.4E-06 51.0 2.9 76 182-257 300-401 (460)
17 PF02602 HEM4: Uroporphyrinoge 90.0 4.4 9.6E-05 35.8 10.8 138 7-149 1-173 (231)
18 COG1587 HemD Uroporphyrinogen- 89.5 3.7 8E-05 37.7 10.2 141 4-150 11-181 (248)
19 PRK05928 hemD uroporphyrinogen 86.7 6.3 0.00014 34.9 9.6 144 3-151 10-184 (249)
20 COG1023 Gnd Predicted 6-phosph 83.8 13 0.00029 35.8 10.6 126 40-177 10-141 (300)
21 COG3980 spsG Spore coat polysa 83.1 24 0.00051 34.6 12.1 200 25-288 1-207 (318)
22 PF02571 CbiJ: Precorrin-6x re 81.5 5.9 0.00013 37.2 7.4 107 68-180 13-124 (249)
23 PRK08057 cobalt-precorrin-6x r 81.4 7.1 0.00015 36.7 7.9 106 68-180 15-123 (248)
24 PRK05752 uroporphyrinogen-III 80.5 35 0.00076 31.3 12.0 116 4-124 13-158 (255)
25 PF14542 Acetyltransf_CG: GCN5 80.2 2.3 5E-05 32.8 3.5 33 102-135 34-70 (78)
26 PRK09453 phosphodiesterase; Pr 79.8 17 0.00037 31.4 9.3 45 41-85 14-72 (182)
27 PRK11070 ssDNA exonuclease Rec 77.2 14 0.00031 38.8 9.3 106 37-157 53-164 (575)
28 PF03446 NAD_binding_2: NAD bi 76.7 19 0.00042 30.7 8.6 97 41-148 12-116 (163)
29 PRK09189 uroporphyrinogen-III 75.1 22 0.00048 32.1 9.0 122 3-129 9-156 (240)
30 PF06414 Zeta_toxin: Zeta toxi 72.6 7.4 0.00016 34.3 5.1 45 109-153 83-128 (199)
31 PF03446 NAD_binding_2: NAD bi 72.2 15 0.00032 31.5 6.7 134 134-287 14-150 (163)
32 TIGR00109 hemH ferrochelatase. 71.2 31 0.00068 33.3 9.4 88 36-143 132-223 (322)
33 TIGR02764 spore_ybaN_pdaB poly 70.9 16 0.00035 31.8 6.8 44 40-83 80-125 (191)
34 TIGR00715 precor6x_red precorr 69.0 20 0.00044 33.7 7.4 105 68-179 13-120 (256)
35 KOG2882 p-Nitrophenyl phosphat 67.4 19 0.00042 35.2 7.0 107 54-174 105-250 (306)
36 PF02896 PEP-utilizers_C: PEP- 65.9 11 0.00024 36.4 5.1 50 33-83 227-276 (293)
37 PRK10444 UMP phosphatase; Prov 65.5 52 0.0011 30.5 9.3 30 49-82 76-105 (248)
38 COG4598 HisP ABC-type histidin 62.0 6.4 0.00014 36.7 2.5 39 258-296 26-64 (256)
39 TIGR03190 benz_CoA_bzdN benzoy 61.6 45 0.00098 32.8 8.6 109 34-153 201-323 (377)
40 TIGR01452 PGP_euk phosphoglyco 61.2 1.1E+02 0.0023 28.5 10.6 26 55-84 85-110 (279)
41 TIGR03127 RuMP_HxlB 6-phospho 60.3 80 0.0017 27.1 9.0 58 56-115 31-92 (179)
42 COG2861 Uncharacterized protei 59.9 19 0.00041 34.3 5.3 84 62-165 131-227 (250)
43 PF00389 2-Hacid_dh: D-isomer 58.8 19 0.00041 29.5 4.7 86 58-150 1-89 (133)
44 PF12850 Metallophos_2: Calcin 58.8 44 0.00096 27.1 6.9 98 43-160 16-125 (156)
45 COG2099 CobK Precorrin-6x redu 58.5 51 0.0011 31.6 7.9 75 100-180 47-123 (257)
46 PF02254 TrkA_N: TrkA-N domain 56.2 24 0.00053 27.7 4.7 72 100-179 2-76 (116)
47 TIGR02873 spore_ylxY probable 54.8 43 0.00093 31.7 6.9 81 3-83 97-204 (268)
48 PF00762 Ferrochelatase: Ferro 54.1 47 0.001 32.2 7.1 112 7-143 103-219 (316)
49 cd00861 ProRS_anticodon_short 54.0 19 0.00042 27.2 3.7 42 109-153 21-64 (94)
50 PRK12435 ferrochelatase; Provi 53.6 1.2E+02 0.0025 29.4 9.8 86 42-143 124-209 (311)
51 COG0276 HemH Protoheme ferro-l 53.3 85 0.0018 30.9 8.8 112 6-143 104-219 (320)
52 PF15498 Dendrin: Nephrin and 52.9 3.1 6.7E-05 42.8 -1.2 32 99-130 378-409 (657)
53 TIGR02884 spore_pdaA delta-lac 51.3 91 0.002 28.3 8.2 26 58-83 132-157 (224)
54 PRK10877 protein disulfide iso 50.5 19 0.00041 33.2 3.7 33 121-153 113-145 (232)
55 PRK00035 hemH ferrochelatase; 50.0 1.5E+02 0.0032 28.4 9.9 85 41-142 138-223 (333)
56 COG4007 Predicted dehydrogenas 49.7 19 0.00042 35.0 3.7 88 37-136 32-128 (340)
57 cd01080 NAD_bind_m-THF_DH_Cycl 49.5 32 0.0007 30.3 4.8 86 43-131 32-121 (168)
58 PF01726 LexA_DNA_bind: LexA D 48.8 17 0.00038 27.3 2.6 38 102-146 19-56 (65)
59 PF02310 B12-binding: B12 bind 48.5 1E+02 0.0022 24.3 7.3 24 133-156 17-40 (121)
60 PF13380 CoA_binding_2: CoA bi 46.8 45 0.00098 27.3 5.0 98 4-131 14-114 (116)
61 PF13580 SIS_2: SIS domain; PD 46.6 29 0.00062 29.1 3.9 30 94-123 101-134 (138)
62 PRK06975 bifunctional uroporph 46.6 1.3E+02 0.0028 32.1 9.6 119 4-127 13-170 (656)
63 COG4822 CbiK Cobalamin biosynt 46.4 1.5E+02 0.0032 28.3 8.7 123 100-285 37-160 (265)
64 PF13380 CoA_binding_2: CoA bi 45.6 1.4E+02 0.0031 24.3 7.9 32 133-165 16-47 (116)
65 PLN02449 ferrochelatase 44.8 1.4E+02 0.0031 31.0 9.3 69 57-142 243-311 (485)
66 COG1038 PycA Pyruvate carboxyl 43.8 52 0.0011 36.7 6.1 102 57-180 83-186 (1149)
67 cd05006 SIS_GmhA Phosphoheptos 43.8 1.8E+02 0.0039 24.9 8.6 87 38-127 18-136 (177)
68 cd07948 DRE_TIM_HCS Saccharomy 43.6 2.8E+02 0.0062 26.0 12.0 127 4-152 22-162 (262)
69 cd06578 HemD Uroporphyrinogen- 43.5 1.1E+02 0.0023 26.5 7.2 115 6-125 10-151 (239)
70 TIGR00106 uncharacterized prot 43.3 31 0.00067 28.0 3.4 56 3-61 18-73 (97)
71 COG0041 PurE Phosphoribosylcar 42.7 76 0.0016 28.4 6.0 32 100-153 35-66 (162)
72 PRK09484 3-deoxy-D-manno-octul 42.7 93 0.002 27.1 6.7 51 104-154 71-122 (183)
73 PF00455 DeoRC: DeoR C termina 42.6 28 0.00061 30.1 3.3 65 93-164 16-82 (161)
74 PLN02350 phosphogluconate dehy 42.6 1.4E+02 0.003 31.0 8.8 29 221-249 102-130 (493)
75 cd00738 HGTP_anticodon HGTP an 42.5 51 0.0011 24.6 4.4 42 110-154 22-65 (94)
76 cd00419 Ferrochelatase_C Ferro 42.1 37 0.0008 28.8 3.9 36 97-143 18-53 (135)
77 COG1671 Uncharacterized protei 41.8 44 0.00095 29.6 4.4 33 122-157 5-38 (150)
78 COG2008 GLY1 Threonine aldolas 41.5 3.2E+02 0.0069 27.3 10.7 57 218-275 132-202 (342)
79 COG4821 Uncharacterized protei 41.1 87 0.0019 29.5 6.4 37 92-128 100-140 (243)
80 PRK09287 6-phosphogluconate de 40.9 2.1E+02 0.0046 29.3 9.8 104 134-249 3-112 (459)
81 COG1494 GlpX Fructose-1,6-bisp 40.4 19 0.00041 35.3 2.0 42 67-112 248-289 (332)
82 cd01979 Pchlide_reductase_N Pc 40.4 3.7E+02 0.0081 26.5 12.3 104 25-129 119-233 (396)
83 PRK15317 alkyl hydroperoxide r 40.4 2.1E+02 0.0045 29.1 9.7 68 6-83 104-171 (517)
84 PF13986 DUF4224: Domain of un 40.3 27 0.00058 24.8 2.3 26 70-105 20-45 (47)
85 COG2871 NqrF Na+-transporting 39.9 20 0.00043 35.5 2.1 24 57-80 376-399 (410)
86 COG2185 Sbm Methylmalonyl-CoA 38.9 2.5E+02 0.0053 24.7 8.5 24 219-242 66-89 (143)
87 TIGR01692 HIBADH 3-hydroxyisob 38.7 2E+02 0.0044 26.7 8.7 136 134-288 9-147 (288)
88 PRK02287 hypothetical protein; 38.3 73 0.0016 28.7 5.3 58 71-141 19-79 (171)
89 PRK10838 spr outer membrane li 38.3 61 0.0013 29.4 4.9 34 4-42 65-100 (190)
90 TIGR03151 enACPred_II putative 38.3 66 0.0014 30.9 5.4 49 97-150 87-135 (307)
91 cd01299 Met_dep_hydrolase_A Me 37.9 2.7E+02 0.0058 26.0 9.4 113 38-152 118-271 (342)
92 PF01904 DUF72: Protein of unk 37.7 1.1E+02 0.0025 27.9 6.7 81 61-151 125-211 (230)
93 COG2247 LytB Putative cell wal 37.4 37 0.0008 33.7 3.5 33 248-280 60-92 (337)
94 PRK08005 epimerase; Validated 37.1 2.9E+02 0.0063 25.4 9.2 75 65-150 13-87 (210)
95 cd07394 MPP_Vps29 Homo sapiens 36.8 2.6E+02 0.0057 24.4 8.6 83 56-159 31-121 (178)
96 COG5016 Pyruvate/oxaloacetate 36.8 77 0.0017 32.7 5.7 119 3-128 93-233 (472)
97 COG2454 Uncharacterized conser 36.7 1.9E+02 0.004 27.1 7.8 66 39-104 112-188 (211)
98 COG2388 Predicted acetyltransf 35.9 24 0.00051 29.0 1.7 26 103-129 52-81 (99)
99 cd00858 GlyRS_anticodon GlyRS 35.8 62 0.0013 26.4 4.2 42 109-154 45-88 (121)
100 TIGR01511 ATPase-IB1_Cu copper 35.8 1.5E+02 0.0033 30.8 8.0 44 109-154 433-476 (562)
101 TIGR03310 matur_ygfJ molybdenu 34.9 1.4E+02 0.003 25.2 6.4 39 118-156 91-134 (188)
102 cd01917 ACS_2 Acetyl-CoA synth 34.7 61 0.0013 31.6 4.5 39 114-152 114-162 (287)
103 cd06836 PLPDE_III_ODC_DapDC_li 34.4 1.3E+02 0.0028 29.5 6.8 73 66-139 38-113 (379)
104 TIGR03882 cyclo_dehyd_2 bacter 34.2 85 0.0018 28.2 5.2 80 69-165 63-159 (193)
105 PF00919 UPF0004: Uncharacteri 34.1 2.5E+02 0.0054 22.6 7.5 39 68-115 17-55 (98)
106 TIGR00274 N-acetylmuramic acid 33.9 89 0.0019 30.0 5.5 35 94-128 124-162 (291)
107 TIGR01081 mpl UDP-N-acetylmura 33.7 3.8E+02 0.0082 26.6 10.1 57 62-123 29-88 (448)
108 PRK09260 3-hydroxybutyryl-CoA 33.6 85 0.0018 29.2 5.3 60 219-287 111-170 (288)
109 TIGR02884 spore_pdaA delta-lac 33.3 1.2E+02 0.0026 27.4 6.1 72 4-83 139-219 (224)
110 PF12146 Hydrolase_4: Putative 33.2 80 0.0017 24.2 4.2 49 99-166 17-65 (79)
111 PRK11657 dsbG disulfide isomer 33.2 51 0.0011 30.7 3.7 29 122-150 124-153 (251)
112 PRK02842 light-independent pro 32.8 4.3E+02 0.0093 26.4 10.4 104 25-129 130-243 (427)
113 COG4770 Acetyl/propionyl-CoA c 32.4 61 0.0013 34.6 4.4 99 60-180 81-180 (645)
114 TIGR01489 DKMTPPase-SF 2,3-dik 32.3 2.4E+02 0.0052 23.5 7.4 19 136-154 153-172 (188)
115 TIGR03590 PseG pseudaminic aci 32.2 4.2E+02 0.0091 24.6 10.0 80 39-121 17-105 (279)
116 PF00702 Hydrolase: haloacid d 31.9 1.4E+02 0.0031 25.2 6.0 67 68-153 133-204 (215)
117 TIGR01417 PTS_I_fam phosphoeno 31.4 87 0.0019 32.9 5.4 50 33-83 474-523 (565)
118 PRK10886 DnaA initiator-associ 31.0 2.4E+02 0.0053 25.4 7.6 58 94-173 107-165 (196)
119 PRK06559 nicotinate-nucleotide 30.7 1.9E+02 0.0042 28.1 7.2 101 24-130 168-273 (290)
120 PRK12490 6-phosphogluconate de 30.6 3E+02 0.0064 25.9 8.5 135 134-288 13-150 (299)
121 TIGR00290 MJ0570_dom MJ0570-re 30.6 1.3E+02 0.0029 27.9 5.9 53 102-154 40-95 (223)
122 PRK05301 pyrroloquinoline quin 30.2 5.1E+02 0.011 25.0 12.1 22 58-80 95-116 (378)
123 PF13344 Hydrolase_6: Haloacid 30.2 1.2E+02 0.0026 24.2 4.9 24 53-80 78-101 (101)
124 PF01866 Diphthamide_syn: Puta 30.1 68 0.0015 30.7 4.1 141 121-287 134-284 (307)
125 PF04273 DUF442: Putative phos 30.0 3.1E+02 0.0068 22.5 8.3 81 57-150 8-92 (110)
126 PLN02424 ketopantoate hydroxym 30.0 2.1E+02 0.0046 28.4 7.4 99 27-131 98-207 (332)
127 COG0104 PurA Adenylosuccinate 29.9 76 0.0016 32.5 4.4 82 70-151 82-223 (430)
128 TIGR00872 gnd_rel 6-phosphoglu 29.7 3.6E+02 0.0079 25.3 8.9 99 42-147 12-114 (298)
129 TIGR03006 pepcterm_polyde poly 29.7 4E+02 0.0086 25.1 9.1 92 37-129 24-142 (265)
130 PRK03803 murD UDP-N-acetylmura 29.6 4.5E+02 0.0098 26.0 9.9 89 65-157 38-147 (448)
131 PRK08385 nicotinate-nucleotide 29.4 3.1E+02 0.0068 26.4 8.4 193 68-295 47-261 (278)
132 cd02513 CMP-NeuAc_Synthase CMP 29.3 3.4E+02 0.0074 23.4 8.1 40 118-157 99-140 (223)
133 PF10087 DUF2325: Uncharacteri 29.0 2.3E+02 0.0051 22.1 6.4 72 68-139 13-95 (97)
134 TIGR01290 nifB nitrogenase cof 28.5 2.8E+02 0.006 28.2 8.3 108 39-146 62-189 (442)
135 TIGR02144 LysX_arch Lysine bio 28.5 1.5E+02 0.0033 26.9 5.9 59 66-124 11-77 (280)
136 TIGR00762 DegV EDD domain prot 28.4 2.5E+02 0.0054 26.2 7.5 43 108-151 43-85 (275)
137 KOG2900 Biotin synthase [Coenz 28.4 1.6E+02 0.0036 28.7 6.2 86 30-123 132-231 (380)
138 PF10096 DUF2334: Uncharacteri 28.3 1.1E+02 0.0024 28.4 5.0 62 101-163 3-86 (243)
139 PTZ00142 6-phosphogluconate de 28.1 3.7E+02 0.0081 27.6 9.2 136 134-288 14-157 (470)
140 cd03108 AdSS Adenylosuccinate 27.4 97 0.0021 31.1 4.7 42 104-151 128-169 (363)
141 PRK10411 DNA-binding transcrip 27.1 69 0.0015 29.6 3.4 66 92-164 89-155 (240)
142 TIGR00423 radical SAM domain p 27.1 5.4E+02 0.012 24.3 10.0 72 8-82 40-121 (309)
143 PF02126 PTE: Phosphotriestera 27.0 5.9E+02 0.013 24.7 11.8 127 7-152 107-257 (308)
144 PRK00048 dihydrodipicolinate r 26.8 2.5E+02 0.0055 26.0 7.2 84 121-256 63-146 (257)
145 COG1416 Uncharacterized conser 26.6 1.3E+02 0.0028 25.4 4.6 73 36-126 13-95 (112)
146 cd05005 SIS_PHI Hexulose-6-pho 26.6 4.1E+02 0.0089 22.8 8.4 22 94-115 73-95 (179)
147 PRK08091 ribulose-phosphate 3- 26.2 5.4E+02 0.012 24.0 9.8 75 63-150 23-97 (228)
148 PF01380 SIS: SIS domain SIS d 26.2 1E+02 0.0023 24.2 4.0 43 95-137 52-98 (131)
149 PRK10329 glutaredoxin-like pro 25.5 3.1E+02 0.0067 20.9 7.0 71 25-116 3-73 (81)
150 KOG3043 Predicted hydrolase re 25.3 22 0.00047 33.7 -0.2 32 7-46 107-138 (242)
151 PRK14057 epimerase; Provisiona 25.0 6.1E+02 0.013 24.2 10.7 76 62-150 29-104 (254)
152 cd01537 PBP1_Repressors_Sugar_ 25.0 2.9E+02 0.0062 23.5 6.7 29 257-285 49-77 (264)
153 PRK10669 putative cation:proto 24.8 1.9E+02 0.0041 29.8 6.5 68 97-172 418-488 (558)
154 cd02518 GT2_SpsF SpsF is a gly 24.6 71 0.0015 28.4 2.9 44 117-160 88-134 (233)
155 COG1658 Small primase-like pro 24.5 95 0.0021 26.7 3.5 73 75-147 8-85 (127)
156 PF00448 SRP54: SRP54-type pro 24.4 2E+02 0.0044 25.7 5.9 69 218-286 30-108 (196)
157 TIGR03026 NDP-sugDHase nucleot 24.4 3.8E+02 0.0081 26.4 8.2 64 221-287 115-187 (411)
158 PLN02200 adenylate kinase fami 24.2 36 0.00079 31.3 1.0 38 261-298 40-80 (234)
159 PRK10669 putative cation:proto 23.6 3E+02 0.0065 28.3 7.6 138 118-297 417-557 (558)
160 PRK15461 NADH-dependent gamma- 23.5 6.2E+02 0.013 23.7 9.9 92 43-146 14-115 (296)
161 PRK05742 nicotinate-nucleotide 23.5 1.5E+02 0.0033 28.4 5.1 100 24-129 161-264 (277)
162 PRK06464 phosphoenolpyruvate s 23.4 1.4E+02 0.0029 32.9 5.3 48 35-83 723-771 (795)
163 PF01738 DLH: Dienelactone hyd 23.4 35 0.00076 29.8 0.7 15 32-46 102-116 (218)
164 PRK04293 adenylosuccinate synt 23.4 1.1E+02 0.0023 30.5 4.1 94 58-151 69-174 (333)
165 cd04951 GT1_WbdM_like This fam 23.4 5.4E+02 0.012 23.1 8.5 52 27-78 191-242 (360)
166 PF03435 Saccharop_dh: Sacchar 23.3 1.8E+02 0.0039 28.1 5.7 90 57-151 25-121 (386)
167 TIGR01125 MiaB-like tRNA modif 23.3 1.1E+02 0.0025 30.4 4.4 42 97-139 37-85 (430)
168 cd02065 B12-binding_like B12 b 23.2 84 0.0018 24.8 2.9 15 265-279 80-94 (125)
169 COG0647 NagD Predicted sugar p 22.9 6.7E+02 0.015 24.0 12.3 98 54-161 90-199 (269)
170 cd04743 NPD_PKS 2-Nitropropane 22.7 1.7E+02 0.0038 28.7 5.4 46 99-150 84-129 (320)
171 COG2217 ZntA Cation transport 22.5 2.5E+02 0.0053 30.7 6.9 66 68-153 543-608 (713)
172 TIGR02026 BchE magnesium-proto 22.2 4.1E+02 0.0088 27.1 8.2 31 265-298 92-122 (497)
173 PF04914 DltD_C: DltD C-termin 22.1 1E+02 0.0022 26.4 3.3 62 70-165 41-117 (130)
174 PF04322 DUF473: Protein of un 22.1 1.3E+02 0.0028 25.6 3.9 81 67-164 10-93 (119)
175 PRK08811 uroporphyrinogen-III 22.1 1.8E+02 0.0039 27.2 5.2 113 6-123 30-165 (266)
176 PRK13509 transcriptional repre 22.0 1.2E+02 0.0026 28.1 4.0 66 92-164 89-155 (251)
177 KOG0238 3-Methylcrotonyl-CoA c 21.8 1.2E+02 0.0026 32.2 4.3 145 9-180 13-176 (670)
178 cd06578 HemD Uroporphyrinogen- 21.8 2.2E+02 0.0047 24.6 5.4 98 55-154 122-230 (239)
179 cd03020 DsbA_DsbC_DsbG DsbA fa 21.8 98 0.0021 27.1 3.2 36 121-157 83-120 (197)
180 cd05126 Mth938 Mth938 domain. 21.7 2.7E+02 0.0058 23.2 5.7 49 98-149 60-113 (117)
181 TIGR00408 proS_fam_I prolyl-tR 21.7 2.4E+02 0.0053 28.8 6.4 44 108-154 304-349 (472)
182 PF10674 Ycf54: Protein of unk 21.7 73 0.0016 26.1 2.2 59 220-290 5-63 (93)
183 PF01513 NAD_kinase: ATP-NAD k 21.6 1.4E+02 0.003 28.1 4.4 28 257-284 70-97 (285)
184 PRK11557 putative DNA-binding 21.5 5.2E+02 0.011 23.7 8.1 68 55-123 128-206 (278)
185 PF04748 Polysacc_deac_2: Dive 21.5 1.5E+02 0.0032 27.1 4.5 67 68-154 109-184 (213)
186 TIGR03278 methan_mark_10 putat 21.4 6.1E+02 0.013 25.6 9.1 95 39-142 56-165 (404)
187 PRK09875 putative hydrolase; P 21.4 7.3E+02 0.016 23.8 12.3 125 7-153 103-244 (292)
188 PRK04539 ppnK inorganic polyph 21.4 1.7E+02 0.0037 28.2 5.0 66 218-284 6-89 (296)
189 PRK05613 O-acetylhomoserine am 21.4 5.4E+02 0.012 26.0 8.8 109 36-152 91-214 (437)
190 TIGR03140 AhpF alkyl hydropero 21.3 8.7E+02 0.019 24.7 10.8 67 7-83 106-172 (515)
191 PF02645 DegV: Uncharacterised 21.3 4.5E+02 0.0097 24.5 7.8 45 106-151 41-87 (280)
192 PRK14571 D-alanyl-alanine synt 21.3 1.7E+02 0.0038 27.2 5.0 28 96-123 53-83 (299)
193 TIGR02194 GlrX_NrdH Glutaredox 21.2 3.3E+02 0.0071 19.7 6.1 50 25-83 1-50 (72)
194 PF02579 Nitro_FeMo-Co: Dinitr 21.2 2.2E+02 0.0047 21.4 4.7 30 105-134 60-89 (94)
195 PF01910 DUF77: Domain of unkn 21.1 2.2E+02 0.0048 22.7 4.9 56 3-61 16-71 (92)
196 PRK03378 ppnK inorganic polyph 21.1 1.5E+02 0.0032 28.5 4.5 67 218-285 6-85 (292)
197 PF00572 Ribosomal_L13: Riboso 21.0 1.5E+02 0.0032 25.3 4.0 31 121-151 2-44 (128)
198 PF01515 PTA_PTB: Phosphate ac 21.0 6.2E+02 0.013 24.6 8.8 68 219-289 64-141 (319)
199 TIGR01418 PEP_synth phosphoeno 21.0 1.7E+02 0.0038 32.0 5.5 48 35-83 716-764 (782)
200 TIGR01508 rib_reduct_arch 2,5- 20.8 2.3E+02 0.005 25.4 5.5 109 40-151 27-144 (210)
201 PRK08562 rpl32e 50S ribosomal 20.5 1.4E+02 0.003 25.7 3.8 26 101-126 95-124 (125)
202 PRK01372 ddl D-alanine--D-alan 20.5 1.8E+02 0.0038 27.0 4.8 65 230-294 22-88 (304)
203 TIGR02726 phenyl_P_delta pheny 20.4 3.6E+02 0.0077 23.7 6.5 82 100-183 53-136 (169)
204 PRK13054 lipid kinase; Reviewe 20.4 2.2E+02 0.0047 26.8 5.5 65 220-284 7-77 (300)
205 TIGR01512 ATPase-IB2_Cd heavy 20.3 2.9E+02 0.0062 28.5 6.7 41 113-155 395-436 (536)
206 TIGR00184 purA adenylosuccinat 20.3 1.3E+02 0.0028 30.8 4.1 35 104-138 126-162 (425)
207 PRK00124 hypothetical protein; 20.3 1.8E+02 0.004 25.6 4.5 33 121-156 3-36 (151)
208 PRK10537 voltage-gated potassi 20.1 2E+02 0.0043 28.8 5.4 75 96-180 240-317 (393)
No 1
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=100.00 E-value=2.6e-85 Score=643.59 Aligned_cols=284 Identities=77% Similarity=1.181 Sum_probs=267.0
Q ss_pred CCccc-cchHHHHHHhcCceeeeeceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCc
Q 022297 1 MNQEY-TSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAV 79 (299)
Q Consensus 1 ~~~~~-~s~~~~~~~~~~~~~~~~~M~IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV 79 (299)
|+++| +|++|+.||++|+.++||.|+|++|+++||||||+|||++|+++++++++++||+||||||||+|+++|+++||
T Consensus 81 ~~~~y~~s~li~~~r~~~~~~~~g~m~I~LA~~~GFC~GVeRAV~~A~ea~~~~p~~~Iy~lgeIIHNp~Vv~~L~~~GV 160 (460)
T PLN02821 81 MGVEYSTSDLVKTLKENGNVYTWGDVTVKLAKAYGFCWGVERAVQIAYEARKQFPDEKLWITNEIIHNPTVNKRLEEMNV 160 (460)
T ss_pred hhhhhhccHHHHHHHhCCCeEEecceEEEEeCCCCCCccHHHHHHHHHHHHhhCCCCCeEEecCCccCHHHHHHHHHCCC
Confidence 57899 99999999999999999999999999999999999999999999877767899999999999999999999999
Q ss_pred EEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCccee
Q 022297 80 QNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETV 159 (299)
Q Consensus 80 ~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~ 159 (299)
+++++.++..+++++++|++|||||||+||++++.|+++|+.|||||||||+|+|+.|+++.++||++||+|+++||||+
T Consensus 161 ~~I~~~~~~~~~~~v~~gdvVIirAHGvs~~~~~~l~~kg~~IVDaTCP~V~KV~~~v~k~~k~gy~iII~Gk~~HpEv~ 240 (460)
T PLN02821 161 QFIEVEEGGKDFSVVGEGDVVILPAFGASVEEMQTLNDKNVQIVDTTCPWVSKVWNTVEKHKKKDYTSVIHGKYAHEETV 240 (460)
T ss_pred EEecccccccccccCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEecCCcchHHHHHHHHHHHhCCCEEEEECCCCCccee
Confidence 99987655567889998999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCeEEEEcChhhHHhhhhhhccCccCCCCccHHHHHHHHHHhhcCCCCCCCCCceeEEEEccccChHHHHHHHHH
Q 022297 160 ATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKL 239 (299)
Q Consensus 160 Gi~g~~~~~~vv~~~~e~~~l~~~~~~~q~~~tt~~~e~f~~~~~~~~~~~~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~ 239 (299)
|+.||+++++||++++|++++|+|++.+|+.++.++++.|+++|+.++|++|||+.++.+++|+|||||+.++|++|+++
T Consensus 241 gt~s~a~~~~VV~~~~ea~~v~~yi~~~~~~~~~~~~~~f~~~f~~a~s~~fdpd~~l~kvgvvnQTTm~~~et~~I~~~ 320 (460)
T PLN02821 241 ATASFAGKYIIVKNMKEATYVCDYILGGQLDGSSGTKEEFLEKFKNAVSKGFDPDTDLVKVGIANQTTMLKGETEEIGKL 320 (460)
T ss_pred ecccccCCeEEECCHHHHHHHhhhcccccccccccchhhhhhhhcccccccCCcccccccEEEEECCCCcHHHHHHHHHH
Confidence 99999988999999999999999999999999999999999999999999999876778999999999999999999999
Q ss_pred HHHHhhhccCccc-------hhhhH-----------HhhcCCceEEEEEcCCCCCcchhHhhhhc
Q 022297 240 VEKTMMRKFGVEN-------MQCIR-----------WLRKRSILSWLLVGGTRAIPHTFKRLQKT 286 (299)
Q Consensus 240 l~~~~~~~~g~~~-------~~ei~-----------~l~~~~vd~~lvvG~~~s~~~~~~~~~~~ 286 (299)
|++.|+++|||++ +++|| .|.++.+|+||||||+|||| -.||+..
T Consensus 321 l~~~~~~k~gp~~~~~~~~vfnTIC~ATqeRQdA~~~L~~~~vDlmiVVGG~NSSN--T~~L~eI 383 (460)
T PLN02821 321 LEKTMMQKYGVENVNDHFMSFNTICDATQERQDAMYKLVEEKLDLMLVVGGWNSSN--TSHLQEI 383 (460)
T ss_pred HHHhhhhhcCCcccCccccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCcc--HHHHHHH
Confidence 9999999999876 46664 77678999999999999995 4567653
No 2
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=100.00 E-value=5.4e-80 Score=598.01 Aligned_cols=277 Identities=60% Similarity=1.029 Sum_probs=251.5
Q ss_pred CCccccchHHHHHHhcCceeeeeceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcE
Q 022297 1 MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQ 80 (299)
Q Consensus 1 ~~~~~~s~~~~~~~~~~~~~~~~~M~IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~ 80 (299)
++++|+|+||++||++|..+.+|.|+|++|+++||||||+|||++|+++++++++++||+||||||||+|+++|+++||.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~m~I~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~vytlG~IIHNp~Vv~~L~~~Gv~ 93 (387)
T PRK13371 14 LETAYQSSLIQSIRENGYVLQFGDVTIKLARAFGFCWGVERAVAMAYETRRHFPDERIWITNEIIHNPSVNQHLREMGVR 93 (387)
T ss_pred HHHHHhHHHHHHHHhCCCeeeeCCeEEEEeCCCCCCccHHHHHHHHHHHHhhcCCCCeEEecCCcCCHHHHHHHHhCCCE
Confidence 35799999999999999999999999999999999999999999999988765567899999999999999999999999
Q ss_pred EecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcceee
Q 022297 81 NIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVA 160 (299)
Q Consensus 81 ~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~G 160 (299)
++++.+..++++++++|++|||||||+||+++++|+++|+.|||||||+|+|+|++|++++++||+|||+||++||||+|
T Consensus 94 ~v~~~~~~~~~~~v~~~~~VIIrAHGv~~~v~~~~~~rgl~iiDATCP~V~kvh~~v~~~~~~Gy~iIIiG~~~HpEV~G 173 (387)
T PRK13371 94 FIPVEKGVKDFSVVTPGDVVILPAFGATVQEMQLLNEKGCHIVDTTCPWVSKVWNTVEKHKKKDFTSIIHGKYKHEETRA 173 (387)
T ss_pred EEcCcCcccchhcCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEecCCccchHHHHHHHHHHhCCCEEEEEcCCCCcceee
Confidence 99864444467888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCeEEEEcChhhHHhhhhhhccCccCCCCccHHHHHHHHHHhhcCCCCCCCCCceeEEEEccccChHHHHHHHHHH
Q 022297 161 TASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240 (299)
Q Consensus 161 i~g~~~~~~vv~~~~e~~~l~~~~~~~q~~~tt~~~e~f~~~~~~~~~~~~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~l 240 (299)
+.||+++++||++++|++++++++..+ .|...|+++|..+.+.+|+++.+..++++++||||+.++|++|+++|
T Consensus 174 i~g~a~~~~VV~~~~e~~~l~~~~~~~------~~~~~~~~~f~~~~s~~~~~~~~~~kv~vvsQTT~~~~~~~~iv~~l 247 (387)
T PRK13371 174 TSSFAGTYLVVLDLEEAQYVADYILGG------GDREEFLERFAKAYSPGFDPDRDLERVGVANQTTMLKSETEEIGKLF 247 (387)
T ss_pred eccccCceEEECCHHHHHHHhhhhccc------cchhhhhhhhhhcccccCCccCCCccEEEEECCCCcHHHHHHHHHHH
Confidence 999998789999999999998777765 58889999999999999987655689999999999999999999999
Q ss_pred HHHhhhccCcc-------chhhhH-----------HhhcCCceEEEEEcCCCCCcchhHhhhh
Q 022297 241 EKTMMRKFGVE-------NMQCIR-----------WLRKRSILSWLLVGGTRAIPHTFKRLQK 285 (299)
Q Consensus 241 ~~~~~~~~g~~-------~~~ei~-----------~l~~~~vd~~lvvG~~~s~~~~~~~~~~ 285 (299)
++.++..+++. ..++|| .|+++.+|+||||||+|||| -+||.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~~La~~~vD~miVVGG~nSSN--T~rL~e 308 (387)
T PRK13371 248 ERTMLRKYGPANLNEHFLSFNTICDATQERQDAMFSLVEEPLDLMVVIGGYNSSN--TTHLQE 308 (387)
T ss_pred HHhhhhhcCCccccccccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCcc--HHHHHH
Confidence 99888888753 457774 67556899999999999995 456643
No 3
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=100.00 E-value=2.7e-70 Score=513.32 Aligned_cols=216 Identities=28% Similarity=0.466 Sum_probs=194.9
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcC
Q 022297 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 104 (299)
Q Consensus 25 M~IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRA 104 (299)
|+|++|+++||||||+|||++|++++.++++++||+||||||||+|+++|+++||.++++ ++++++++|++|||||
T Consensus 1 M~I~lA~~~GFC~GV~rAi~~a~~~~~~~~~~~vy~lG~iVHN~~Vv~~L~~~Gv~~v~~----~~~~~v~~~~~ViirA 76 (281)
T PRK12360 1 MKILIAKNAGFCFGVKRAIDTAYDEIEKNDGKKIYTLGPLIHNNQVVSDLEEKGVKTIEE----SEIDSLKEGDVVIIRS 76 (281)
T ss_pred CEEEEeCCCCCCccHHHHHHHHHHHHHhcCCCCeEEecCCcCCHHHHHHHHHCcCEEECc----CchhhCCCCCEEEEeC
Confidence 899999999999999999999999876554678999999999999999999999999942 1367888888999999
Q ss_pred CCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccCC-eEEEEcChhhHHhhhhh
Q 022297 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDY 183 (299)
Q Consensus 105 HGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~~-~~~vv~~~~e~~~l~~~ 183 (299)
||+||+++++|+++|++|||||||||+|+|++|++++++||+|||+||++||||+|+.||++ .++||++++|++.++
T Consensus 77 HGv~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~iviiG~~~HpEv~gi~g~~~~~~~vv~~~~d~~~l~-- 154 (281)
T PRK12360 77 HGVSKKVYKDLKDKGLEIIDATCPFVKKIQNIVEEYYNKGYSIIIVGDKNHPEVIGINGWCDNSAYIVNSIEEVENIP-- 154 (281)
T ss_pred CCCCHHHHHHHHHCCCeEEeCCCccchHHHHHHHHHHhCCCEEEEEcCCCCceeeEeccCcCCCeEEECCHHHHhhCc--
Confidence 99999999999999999999999999999999999999999999999999999999999996 578999999998762
Q ss_pred hccCccCCCCccHHHHHHHHHHhhcCCCCCCCCCceeEEEEccccChHHHHHHHHHHHHHhhhccCccchhhhH------
Q 022297 184 ILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIR------ 257 (299)
Q Consensus 184 ~~~~q~~~tt~~~e~f~~~~~~~~~~~~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~~~ei~------ 257 (299)
+ .+++++++||||+.++|++++++|+..++.. ...++||
T Consensus 155 -----------------------------~---~~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~---~v~~TIC~aT~~R 199 (281)
T PRK12360 155 -----------------------------F---LDKACVVAQTTIIPELWEDILNVIKLKSKEL---VFFNTICSATKKR 199 (281)
T ss_pred -----------------------------c---ccCEEEEECCCCcHHHHHHHHHHHHHhCccc---ccCCCcchhhhhH
Confidence 1 2689999999999999999999999887665 4467774
Q ss_pred -----HhhcCCceEEEEEcCCCCCcchhHhhh
Q 022297 258 -----WLRKRSILSWLLVGGTRAIPHTFKRLQ 284 (299)
Q Consensus 258 -----~l~~~~vd~~lvvG~~~s~~~~~~~~~ 284 (299)
.| ++.+|+||||||+|||| -+||.
T Consensus 200 Q~a~~~L-a~~vD~miVVGg~~SsN--T~rL~ 228 (281)
T PRK12360 200 QESAKEL-SKEVDVMIVIGGKHSSN--TQKLV 228 (281)
T ss_pred HHHHHHH-HHhCCEEEEecCCCCcc--HHHHH
Confidence 77 89999999999999995 45554
No 4
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=100.00 E-value=1.3e-69 Score=506.48 Aligned_cols=219 Identities=26% Similarity=0.391 Sum_probs=199.7
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEc
Q 022297 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLP 103 (299)
Q Consensus 24 ~M~IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIR 103 (299)
.|+|++|+|+||||||+|||++|+.+++++ +++||++|+||||++|+++|+++|+.|+++ ++++|+|++||||
T Consensus 1 ~~~I~lA~prGFCaGV~RAI~ive~al~~~-g~pIyv~~eIVHN~~Vv~~L~~~g~~fve~------l~e~p~~~~VIfs 73 (294)
T COG0761 1 MMKILLAKPRGFCAGVDRAIQIVERALEEY-GAPIYVRHEIVHNRYVVDRLREKGAIFVEE------LDEVPDGATVIFS 73 (294)
T ss_pred CceEEEecCCccchhHHHHHHHHHHHHHHc-CCCeEEEeccccCHHHHHHHHHcCCEeccc------cccCCCCCEEEEE
Confidence 489999999999999999999999999987 578999999999999999999999999974 5788999999999
Q ss_pred CCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecc-cCC-eEEEEcChhhHHhhh
Q 022297 104 AFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATAS-FAG-KYIIVKNMKEAEYVC 181 (299)
Q Consensus 104 AHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g-~~~-~~~vv~~~~e~~~l~ 181 (299)
||||||+++++|++||++++|||||||+|+|+.|++++++||+||+|||++||||+|++| |++ .++++++++|++.++
T Consensus 74 AHGVs~~v~~~a~~r~l~v~DATCPlVtKvh~~v~~~~~~G~~iIliG~~gHpEv~Gt~Gq~~~~~~~lve~~~d~~~l~ 153 (294)
T COG0761 74 AHGVSPAVREEAKERGLKVIDATCPLVTKVHKEVERYAREGYEIILIGHKGHPEVIGTMGQYPEGGVLLVESVEDVANLK 153 (294)
T ss_pred CCCCCHHHHHHHHHCCCEEEecCCCcchHHHHHHHHHHhCCCEEEEEccCCCCceeeeccccCCCceEEEecHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999 555 489999999998772
Q ss_pred hhhccCccCCCCccHHHHHHHHHHhhcCCCCCCCCCceeEEEEccccChHHHHHHHHHHHHHhhhccCccchhhhH----
Q 022297 182 DYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIR---- 257 (299)
Q Consensus 182 ~~~~~~q~~~tt~~~e~f~~~~~~~~~~~~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~~~ei~---- 257 (299)
+. ..+++++++|||||.++|.+|+++|++.++....+.. ++||
T Consensus 154 -----------------------------~~---~~~~l~~~tQTTls~ddt~~Iv~~l~~r~p~~~~~~~-~~ICyAT~ 200 (294)
T COG0761 154 -----------------------------VQ---LPDKLAFVTQTTLSVDDTAEIVAALKERFPKIEVPPF-NDICYATQ 200 (294)
T ss_pred -----------------------------cC---CcccEEEEeeeecCHHHHHHHHHHHHHhCccccCCcc-cccchhhh
Confidence 01 1248999999999999999999999999998776644 8885
Q ss_pred -------HhhcCCceEEEEEcCCCCCcchhHhhhh
Q 022297 258 -------WLRKRSILSWLLVGGTRAIPHTFKRLQK 285 (299)
Q Consensus 258 -------~l~~~~vd~~lvvG~~~s~~~~~~~~~~ 285 (299)
.| ++.+|+||||||+|||| -+||..
T Consensus 201 nRQ~Avk~l-a~~~Dl~iVVG~~nSSN--s~rL~e 232 (294)
T COG0761 201 NRQDAVKEL-APEVDLVIVVGSKNSSN--SNRLAE 232 (294)
T ss_pred hHHHHHHHH-hhcCCEEEEECCCCCcc--HHHHHH
Confidence 67 88899999999999995 467764
No 5
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=100.00 E-value=2.9e-69 Score=509.90 Aligned_cols=218 Identities=27% Similarity=0.387 Sum_probs=194.4
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcC
Q 022297 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 104 (299)
Q Consensus 25 M~IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRA 104 (299)
|+|++|+++||||||+|||++|++++.++ +++||+||||||||+|+++|+++||.++++ ++++++|++|||||
T Consensus 1 MkI~lA~~~GFC~GV~rAi~~a~~~~~~~-~~~iytlG~iIHN~~vv~~L~~~GV~~v~~------~~~v~~~~~ViirA 73 (298)
T PRK01045 1 MKILLANPRGFCAGVDRAIEIVERALEKY-GAPIYVRHEIVHNRYVVERLEKKGAIFVEE------LDEVPDGAIVIFSA 73 (298)
T ss_pred CEEEEeCCCCCCccHHHHHHHHHHHHHhc-CCCeEEEecCccCHHHHHHHHHCCCEEecC------cccCCCCCEEEEeC
Confidence 89999999999999999999999987654 468999999999999999999999999974 57788888999999
Q ss_pred CCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccCC-eEEEEcChhhHHhhhhh
Q 022297 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDY 183 (299)
Q Consensus 105 HGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~~-~~~vv~~~~e~~~l~~~ 183 (299)
||+||+++++|+++|+.|||||||||+|+|++|+++.++||+|||+|+++||||+|+.||++ .++||++++|++.|+
T Consensus 74 HGv~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~vvi~G~~~HpEv~gi~g~~~~~~~vv~~~~e~~~l~-- 151 (298)
T PRK01045 74 HGVSPAVREEAKERGLTVIDATCPLVTKVHKEVARMSREGYEIILIGHKGHPEVEGTMGQAPGGVYLVESPEDVAKLE-- 151 (298)
T ss_pred CCCCHHHHHHHHHCCCeEEeCCCccchHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccCcCCCEEEEcCHHHHhhcc--
Confidence 99999999999999999999999999999999999999999999999999999999999995 578999999998762
Q ss_pred hccCccCCCCccHHHHHHHHHHhhcCCCCCCCCCceeEEEEccccChHHHHHHHHHHHHHhhhccCccchhhhH------
Q 022297 184 ILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIR------ 257 (299)
Q Consensus 184 ~~~~q~~~tt~~~e~f~~~~~~~~~~~~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~~~ei~------ 257 (299)
. ...+++++++||||+.++|++|+++|++.++.... ...++||
T Consensus 152 -----------------------------~-~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v-~~~nTIC~aT~~R 200 (298)
T PRK01045 152 -----------------------------V-KDPDKLALVTQTTLSVDDTAEIIAALKERFPEIQG-PPKDDICYATQNR 200 (298)
T ss_pred -----------------------------c-CCCCcEEEEEcCCCcHHHHHHHHHHHHHhCcCccc-CCCCCcchhhHHH
Confidence 0 12368999999999999999999999988766432 1257774
Q ss_pred -----HhhcCCceEEEEEcCCCCCcchhHhhhh
Q 022297 258 -----WLRKRSILSWLLVGGTRAIPHTFKRLQK 285 (299)
Q Consensus 258 -----~l~~~~vd~~lvvG~~~s~~~~~~~~~~ 285 (299)
.| ++.+|+||||||+|||| -+||.+
T Consensus 201 Q~a~~~L-a~~vD~miVVGg~~SsN--T~kL~~ 230 (298)
T PRK01045 201 QEAVKEL-APQADLVIVVGSKNSSN--SNRLRE 230 (298)
T ss_pred HHHHHHH-HhhCCEEEEECCCCCcc--HHHHHH
Confidence 77 88999999999999995 455543
No 6
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=100.00 E-value=2.9e-69 Score=506.20 Aligned_cols=215 Identities=32% Similarity=0.475 Sum_probs=192.7
Q ss_pred EEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCc-EEecCCccccccccccCCCEEEEcC
Q 022297 26 KVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAV-QNIPVEEGKKQFDVVNKGDVVVLPA 104 (299)
Q Consensus 26 ~IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV-~~v~~~~~~~~~~ei~~g~~VIIRA 104 (299)
+|++|+++||||||+|||++|++++++. +++||+||||||||+|+++|+++|| .++++ ++++++|++|||||
T Consensus 1 ~I~lA~~~GFC~GV~rAi~~a~~~~~~~-~~~iy~lG~iIHN~~Vv~~L~~~Gv~~~v~~------~~~v~~~~~ViirA 73 (280)
T TIGR00216 1 DIILAKPRGFCFGVKRAIQMAEEALKES-GKPVYTLGPIVHNPQVVERLRERGVFFFLED------LDEVAAGDTVIIRA 73 (280)
T ss_pred CEEEccCCCCCccHHHHHHHHHHHHhhc-CCCeEEecCCccCHHHHHHHHHCCCEEeecC------cccCCCCCEEEEeC
Confidence 5899999999999999999999988643 5789999999999999999999996 77754 57888889999999
Q ss_pred CCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccCC-eEEEEcChhhHHhhhhh
Q 022297 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDY 183 (299)
Q Consensus 105 HGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~~-~~~vv~~~~e~~~l~~~ 183 (299)
||+||+++++|+++|+.|||||||||+|+|++|+++.++||+|||+||++||||+|+.||++ .++||++.+|++.|.
T Consensus 74 HGv~~~~~~~~~~~gl~viDaTCP~V~kv~~~v~~~~~~Gy~iiiiG~~~HpEv~gi~g~~~~~~~vv~~~~d~~~l~-- 151 (280)
T TIGR00216 74 HGVPPEVREELEKKGLEVIDATCPLVTKVHNAVKKYAKEGYHVILIGKKNHPEVIGTRGYAPDKAIVVETLEDLENFK-- 151 (280)
T ss_pred CCCCHHHHHHHHHCCCeEEeCCCcccHHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccCcCCCEEEECCHHHHHhCC--
Confidence 99999999999999999999999999999999999999999999999999999999999996 578999999998762
Q ss_pred hccCccCCCCccHHHHHHHHHHhhcCCCCCCCCCceeEEEEccccChHHHHHHHHHHHHHhhhccCccchhhhH------
Q 022297 184 ILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIR------ 257 (299)
Q Consensus 184 ~~~~q~~~tt~~~e~f~~~~~~~~~~~~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~~~ei~------ 257 (299)
. .+++++++||||+.++|++++++|++.++....+ ..++||
T Consensus 152 -----------------------------~---~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~-~~nTIC~AT~~R 198 (280)
T TIGR00216 152 -----------------------------V---EDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVP-VFNTICYATQNR 198 (280)
T ss_pred -----------------------------C---CCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCC-CCCCcccccHHH
Confidence 1 2589999999999999999999999988655544 457884
Q ss_pred -----HhhcCCceEEEEEcCCCCCcchhHhhhh
Q 022297 258 -----WLRKRSILSWLLVGGTRAIPHTFKRLQK 285 (299)
Q Consensus 258 -----~l~~~~vd~~lvvG~~~s~~~~~~~~~~ 285 (299)
.| ++.+|+||||||+||| |-+||..
T Consensus 199 Q~a~~~l-a~~vD~miVVGg~nSs--NT~rL~e 228 (280)
T TIGR00216 199 QDAVKEL-APEVDLMIVIGGKNSS--NTTRLYE 228 (280)
T ss_pred HHHHHHH-HhhCCEEEEECCCCCc--hHHHHHH
Confidence 77 8899999999999999 4566654
No 7
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=100.00 E-value=3.1e-69 Score=506.31 Aligned_cols=216 Identities=31% Similarity=0.493 Sum_probs=172.5
Q ss_pred EEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCC
Q 022297 27 VKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 106 (299)
Q Consensus 27 IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHG 106 (299)
|++|+++||||||+|||++|+++++++ +++||+||||||||+|+++|+++||.++++ ++++++|++|||||||
T Consensus 1 I~lA~~~GfC~GV~rAi~~a~~~~~~~-~~~vy~lG~iIHN~~vv~~L~~~Gv~~v~~------~~~~~~g~~ViirAHG 73 (281)
T PF02401_consen 1 IILAKPAGFCFGVKRAIEIAEEALEEY-PGPVYTLGPIIHNPQVVERLEKRGVKVVDD------IDEVPEGDTVIIRAHG 73 (281)
T ss_dssp EEE-TT-SS-HHHHHHHHHHHHHCCCH-SS-EEECS-SSS-HHHHHHHHHCTEEEESS------GCGS-TTEEEEE-TT-
T ss_pred CEecCCCCcCccHHHHHHHHHHHHHhc-CCCEEEecCcccCHHHHHHHHHCCCEEecC------ccccCCCCEEEEeCCC
Confidence 789999999999999999999999765 358999999999999999999999999975 4778899999999999
Q ss_pred CCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccCC--eEEEEcChhhHHhhhhhh
Q 022297 107 AAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG--KYIIVKNMKEAEYVCDYI 184 (299)
Q Consensus 107 vs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~~--~~~vv~~~~e~~~l~~~~ 184 (299)
+||+++++|+++|+.|||||||||+|+|++|++++++||+|||+|+++||||+|++||++ +++++++.+|++.++
T Consensus 74 v~~~~~~~l~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~iviiG~~~HpEv~gi~g~~~~~~~~vv~~~~~~~~l~--- 150 (281)
T PF02401_consen 74 VPPEVYEELKERGLEVIDATCPFVKKIHKIVRKYAKEGYQIVIIGDKNHPEVIGILGYAPEEKAIVVESPEDVEKLP--- 150 (281)
T ss_dssp --HHHHHHHHHTTEEEEE---HHHHHHHHHHHHHHHCT-EEEEES-TT-HHHHHHHCCHHTS-EEEESSHHHHHHGG---
T ss_pred CCHHHHHHHHHcCCEEEECCChhHHHHHHHHHHHHhcCCEEEEECCCCCceEEEecccccCCceEEeCChhhhcccC---
Confidence 999999999999999999999999999999999999999999999999999999999997 789999999998773
Q ss_pred ccCccCCCCccHHHHHHHHHHhhcCCCCCCCCCceeEEEEccccChHHHHHHHHHHHHHhhhccCccchhhhH-------
Q 022297 185 LGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIR------- 257 (299)
Q Consensus 185 ~~~q~~~tt~~~e~f~~~~~~~~~~~~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~~~ei~------- 257 (299)
..+.+++++++||||+.++|++++++|++.++...++ ..++||
T Consensus 151 -----------------------------~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~-~~nTIC~aT~~RQ 200 (281)
T PF02401_consen 151 -----------------------------ISDPKKVAVVSQTTQSVEKFEEIVEALKKRFPELEGP-VFNTICYATQNRQ 200 (281)
T ss_dssp -----------------------------GSSTTCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-S-CC-S--CHHHHHH
T ss_pred -----------------------------CCCCCeEEEEEeecccHHHHHHHHHHHHHhCccccCC-CCCCCCHhHHHHH
Confidence 1123699999999999999999999999999887643 447774
Q ss_pred ----HhhcCCceEEEEEcCCCCCcchhHhhhh
Q 022297 258 ----WLRKRSILSWLLVGGTRAIPHTFKRLQK 285 (299)
Q Consensus 258 ----~l~~~~vd~~lvvG~~~s~~~~~~~~~~ 285 (299)
.| ++.+|+||||||+||| |-+||..
T Consensus 201 ~a~~~L-a~~vD~miVIGg~~Ss--NT~kL~e 229 (281)
T PF02401_consen 201 EAAREL-AKEVDAMIVIGGKNSS--NTRKLAE 229 (281)
T ss_dssp HHHHHH-HCCSSEEEEES-TT-H--HHHHHHH
T ss_pred HHHHHH-HhhCCEEEEecCCCCc--cHHHHHH
Confidence 77 8899999999999999 5566654
No 8
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=100.00 E-value=7.7e-64 Score=513.15 Aligned_cols=214 Identities=27% Similarity=0.443 Sum_probs=194.3
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcC
Q 022297 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 104 (299)
Q Consensus 25 M~IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRA 104 (299)
|+|++|+++||||||+|||++|++++.++ +++|||||||||||||+++|+++||.++++ ++++++|++|||||
T Consensus 1 m~i~~a~~~GfC~GV~rAi~~~~~~~~~~-~~~i~~lg~ivHN~~vv~~l~~~Gv~~v~~------~~~~~~~~~vii~a 73 (647)
T PRK00087 1 MEIILAKKAGFCFGVKRAVDTAIKTAEEL-KGKIYTLGPLIHNNQVVEKLKKKGIKPIED------IDELNEGDTIIIRS 73 (647)
T ss_pred CEEEEeCCCCcCccHHHHHHHHHHHHHhc-CCCEEEeCCCcCCHHHHHHHHHCCCEEeCC------HhhCCCCCEEEEeC
Confidence 89999999999999999999999987654 578999999999999999999999999974 57788899999999
Q ss_pred CCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccCC-eEEEEcChhhHHhhhhh
Q 022297 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDY 183 (299)
Q Consensus 105 HGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~~-~~~vv~~~~e~~~l~~~ 183 (299)
||+||+++++|+++|+.|||||||||+|+|++|++++++||+|||+|+++||||+|+.||++ .++||++++|++.++
T Consensus 74 HG~~~~~~~~~~~~~~~viDaTCP~V~k~~~~~~~~~~~g~~ivi~G~~~HpEv~g~~g~~~~~~~vv~~~~~~~~~~-- 151 (647)
T PRK00087 74 HGVPPEVLEELKDKGLKVIDATCPFVKNIQKLAKKYYEEGYQIVIVGDKNHPEVIGINGWCNNSAIIVEDGEEAEKLP-- 151 (647)
T ss_pred CCCCHHHHHHHHHCCCeEEECCCcCchHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccccCCCEEEECCHHHHhhCC--
Confidence 99999999999999999999999999999999999999999999999999999999999996 579999999998762
Q ss_pred hccCccCCCCccHHHHHHHHHHhhcCCCCCCCCCceeEEEEccccChHHHHHHHHHHHHHhhhccCccchhhhH------
Q 022297 184 ILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIR------ 257 (299)
Q Consensus 184 ~~~~q~~~tt~~~e~f~~~~~~~~~~~~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~~~ei~------ 257 (299)
. .+++++++||||+.++|++++++|++.++.. ...++||
T Consensus 152 -----------------------------~---~~~~~~~~QTT~~~~~~~~~~~~l~~~~~~~---~~~~tiC~at~~R 196 (647)
T PRK00087 152 -----------------------------F---DKKICVVSQTTEKQENFEKVLKELKKKGKEV---KVFNTICNATEVR 196 (647)
T ss_pred -----------------------------C---CCCEEEEEcCCCcHHHHHHHHHHHHHhCCCc---ccCCCcchhhhhH
Confidence 1 2589999999999999999999999877664 4567775
Q ss_pred -----HhhcCCceEEEEEcCCCCCcchhHhhhh
Q 022297 258 -----WLRKRSILSWLLVGGTRAIPHTFKRLQK 285 (299)
Q Consensus 258 -----~l~~~~vd~~lvvG~~~s~~~~~~~~~~ 285 (299)
.| ++.+|+||||||+|||| -+||..
T Consensus 197 q~a~~~l-a~~~d~~~vvGg~~SsN--t~~L~~ 226 (647)
T PRK00087 197 QEAAEKL-AKKVDVMIVVGGKNSSN--TTKLYE 226 (647)
T ss_pred HHHHHHH-HhhCCEEEEECCCCCcc--HHHHHH
Confidence 77 78999999999999995 456653
No 9
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=96.93 E-value=0.035 Score=53.08 Aligned_cols=171 Identities=19% Similarity=0.156 Sum_probs=113.5
Q ss_pred CcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHH--Hh-cCcEEecCCccccccccccC---CCEEEEcCCCCC
Q 022297 35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRL--EE-MAVQNIPVEEGKKQFDVVNK---GDVVVLPAFGAA 108 (299)
Q Consensus 35 FC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L--~~-~GV~~v~~~~~~~~~~ei~~---g~~VIIRAHGvs 108 (299)
=|.=|+++-+.+.+..++ +-.|...|.-=| |.|..-+ .. ....++++.++. +.++. ....++.==-.+
T Consensus 93 TCP~V~k~~~~v~~~~~~--Gy~iviiG~~~H-pEv~gi~g~~~~~~~~vv~~~~~~---~~l~~~~~~kv~vvsQTT~~ 166 (281)
T PF02401_consen 93 TCPFVKKIHKIVRKYAKE--GYQIVIIGDKNH-PEVIGILGYAPEEKAIVVESPEDV---EKLPISDPKKVAVVSQTTQS 166 (281)
T ss_dssp --HHHHHHHHHHHHHHHC--T-EEEEES-TT--HHHHHHHCCHHTS-EEEESSHHHH---HHGGGSSTTCEEEEE-TTS-
T ss_pred CChhHHHHHHHHHHHHhc--CCEEEEECCCCC-ceEEEecccccCCceEEeCChhhh---cccCCCCCCeEEEEEeeccc
Confidence 488888888888888765 457999999666 4454443 12 345666654332 33332 235566655555
Q ss_pred H----HHHHHHHhcCCeEE----eCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccC----CeEEEEcChhh
Q 022297 109 V----EEMVTLNNKNVQIV----DTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKE 176 (299)
Q Consensus 109 ~----~v~~~l~~kgl~VI----DATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~----~~~~vv~~~~e 176 (299)
. ++.+.|+++.-.+. |+-|+--..=|..+++++++---+++||.++-.-+.=+.--| ..++.|++++|
T Consensus 167 ~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~SsNT~kL~eia~~~~~~t~~Ie~~~e 246 (281)
T PF02401_consen 167 VEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNSSNTRKLAEIAKEHGKPTYHIETADE 246 (281)
T ss_dssp HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-HHHHHHHHHHHHCTTCEEEESSGGG
T ss_pred HHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCCccHHHHHHHHHHhCCCEEEeCCccc
Confidence 5 66777888887776 999999999999999999999999999999999888776544 46899999999
Q ss_pred HHhhhhhhccCccCCCCccHHHHHHHHHHhhcCCCCCCCCCceeEEEEccccChHHHHHHHHHHHHH
Q 022297 177 AEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKT 243 (299)
Q Consensus 177 ~~~l~~~~~~~q~~~tt~~~e~f~~~~~~~~~~~~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~l~~~ 243 (299)
++.- | | + ...++||++=++=+.+-.+++++.|+++
T Consensus 247 l~~~--~-------------------l--------~---~~~~VGItaGASTP~~ii~eVi~~l~~~ 281 (281)
T PF02401_consen 247 LDPE--W-------------------L--------K---GVKKVGITAGASTPDWIIEEVIDRLEEI 281 (281)
T ss_dssp --HH--H-------------------H--------T---T-SEEEEEE-TTS-HHHHHHHHHHHHHH
T ss_pred cCHh--H-------------------h--------C---CCCEEEEEccCCCCHHHHHHHHHHHhcC
Confidence 8632 1 1 1 1259999999999999999999988763
No 10
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=95.95 E-value=0.011 Score=56.63 Aligned_cols=89 Identities=12% Similarity=0.089 Sum_probs=61.0
Q ss_pred hhhccCccCCCCccHHHHHHHHHHhhcCCCCCCCCCceeEEEEccccC---------------------hHHHHHHHHHH
Q 022297 182 DYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTML---------------------KGETEEIGKLV 240 (299)
Q Consensus 182 ~~~~~~q~~~tt~~~e~f~~~~~~~~~~~~d~~~~~~kv~Iv~QTT~~---------------------~~~~~~i~~~l 240 (299)
++.+.+|||++..+.+++.+.+++. |+...-....+||++|+.+ +.++.+|.+..
T Consensus 155 ~v~vvsQTT~~~~~~~~i~~~l~~~----~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nSsNT~rL~ei~ 230 (280)
T TIGR00216 155 LLGVVSQTTLSQEDTKEIVAELKAR----VPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKNSSNTTRLYEIA 230 (280)
T ss_pred cEEEEEcCCCcHHHHHHHHHHHHHh----CCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCCCchHHHHHHHH
Confidence 3556788666666666666655443 3111111356999999998 56777777888
Q ss_pred HHHhhhccCccchhhhH--HhhcCCceEEEEEcCCCCC
Q 022297 241 EKTMMRKFGVENMQCIR--WLRKRSILSWLLVGGTRAI 276 (299)
Q Consensus 241 ~~~~~~~~g~~~~~ei~--~l~~~~vd~~lvvG~~~s~ 276 (299)
+...++.|++++++||+ ||.. .+.+=|..|....
T Consensus 231 ~~~~~~t~~Ie~~~el~~~~l~~--~~~VGiTAGASTP 266 (280)
T TIGR00216 231 EEHGPPSYLIETAEELPEEWLKG--VKVVGITAGASTP 266 (280)
T ss_pred HHhCCCEEEECChHHCCHHHhCC--CCEEEEEecCCCC
Confidence 88888999999999995 9943 4556677665433
No 11
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=95.54 E-value=0.18 Score=48.68 Aligned_cols=171 Identities=12% Similarity=0.127 Sum_probs=116.3
Q ss_pred CcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHh--cCcEEecCCccccccccc--cC-CCEEEEcCCCCCH
Q 022297 35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEE--MAVQNIPVEEGKKQFDVV--NK-GDVVVLPAFGAAV 109 (299)
Q Consensus 35 FC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~--~GV~~v~~~~~~~~~~ei--~~-g~~VIIRAHGvs~ 109 (299)
=|.=|+++=+.+.+..++ +-.|..+|+-=| |.|..-+-- ....++.+.+ +++.+ +. ....++.==--+.
T Consensus 95 TCP~V~k~~~~v~~~~~~--Gy~vvi~G~~~H-pEv~gi~g~~~~~~~vv~~~~---e~~~l~~~~~~~v~vvsQTT~~~ 168 (298)
T PRK01045 95 TCPLVTKVHKEVARMSRE--GYEIILIGHKGH-PEVEGTMGQAPGGVYLVESPE---DVAKLEVKDPDKLALVTQTTLSV 168 (298)
T ss_pred CCccchHHHHHHHHHHhC--CCEEEEEeCCCC-CeeeeeccCcCCCEEEEcCHH---HHhhcccCCCCcEEEEEcCCCcH
Confidence 377777777777776664 346778887655 223222211 1133444332 22333 22 2233444333444
Q ss_pred H----HHHHHHhcC--CeE--EeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccC----CeEEEEcChhhH
Q 022297 110 E----EMVTLNNKN--VQI--VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEA 177 (299)
Q Consensus 110 ~----v~~~l~~kg--l~V--IDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~----~~~~vv~~~~e~ 177 (299)
+ +.+.|+++. +.+ .|+-|.-...=|+.+++++++=--+++||.++-.-+.=+..-| ..++.|++.+|+
T Consensus 169 ~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~kL~~i~~~~~~~t~~Ie~~~el 248 (298)
T PRK01045 169 DDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSSNSNRLREVAEEAGAPAYLIDDASEI 248 (298)
T ss_pred HHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHCCCEEEECChHHC
Confidence 4 555666554 777 9999999999999999999999999999999999888775544 368999999998
Q ss_pred HhhhhhhccCccCCCCccHHHHHHHHHHhhcCCCCCCCCCceeEEEEccccChHHHHHHHHHHHHH
Q 022297 178 EYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKT 243 (299)
Q Consensus 178 ~~l~~~~~~~q~~~tt~~~e~f~~~~~~~~~~~~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~l~~~ 243 (299)
+.- |+ . ...++||++=++=+.+-.++++..|+..
T Consensus 249 ~~~-------------------------~l----~---~~~~VGitaGASTP~~li~eV~~~l~~~ 282 (298)
T PRK01045 249 DPE-------------------------WF----K---GVKTVGVTAGASAPEWLVQEVIARLKEL 282 (298)
T ss_pred cHH-------------------------Hh----c---CCCEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 631 11 1 1258999999999999999999999876
No 12
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=94.59 E-value=0.041 Score=57.81 Aligned_cols=88 Identities=15% Similarity=0.167 Sum_probs=62.8
Q ss_pred hhhccCccCCCCccHHHHHHHHHHhhcCCCCCCCCCceeEEEEccccC---------------------hHHHHHHHHHH
Q 022297 182 DYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTML---------------------KGETEEIGKLV 240 (299)
Q Consensus 182 ~~~~~~q~~~tt~~~e~f~~~~~~~~~~~~d~~~~~~kv~Iv~QTT~~---------------------~~~~~~i~~~l 240 (299)
++.+.+|||++..+.+++.+.++. .|+.. ....+||++|+.+ +.++..|.+.+
T Consensus 155 ~~~~~~QTT~~~~~~~~~~~~l~~----~~~~~--~~~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~SsNt~~L~~i~ 228 (647)
T PRK00087 155 KICVVSQTTEKQENFEKVLKELKK----KGKEV--KVFNTICNATEVRQEAAEKLAKKVDVMIVVGGKNSSNTTKLYEIC 228 (647)
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHH----hCCCc--ccCCCcchhhhhHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHH
Confidence 356678866666666666665543 33311 1366999999998 56777777888
Q ss_pred HHHhhhccCccchhhhH--HhhcCCceEEEEEcCCCCCc
Q 022297 241 EKTMMRKFGVENMQCIR--WLRKRSILSWLLVGGTRAIP 277 (299)
Q Consensus 241 ~~~~~~~~g~~~~~ei~--~l~~~~vd~~lvvG~~~s~~ 277 (299)
+...++.|++++++||+ ||. ....+-|..|.-...
T Consensus 229 ~~~~~~~~~ie~~~el~~~~~~--~~~~vgitagaStP~ 265 (647)
T PRK00087 229 KSNCTNTIHIENAGELPEEWFK--GVKIIGVTAGASTPD 265 (647)
T ss_pred HHHCCCEEEECChHHCCHHHhC--CCCEEEEEeccCCCH
Confidence 88889999999999995 993 456788888865443
No 13
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=94.45 E-value=0.028 Score=56.05 Aligned_cols=94 Identities=11% Similarity=0.164 Sum_probs=63.8
Q ss_pred hhhccCccCCCCccHHHHHHHHHHhhcCCCCCC---CCC-ceeEEEEccccChHHHHHH---------------------
Q 022297 182 DYILGGELNGSSSTKEAFLEKFKKAVSKGFDPD---VDL-VKVGIANQTTMLKGETEEI--------------------- 236 (299)
Q Consensus 182 ~~~~~~q~~~tt~~~e~f~~~~~~~~~~~~d~~---~~~-~kv~Iv~QTT~~~~~~~~i--------------------- 236 (299)
++.+.+|||++..+.+.+.+.+++++...+.+. .+. ...+||++|+.+++...+|
T Consensus 226 kv~vvsQTT~~~~~~~~iv~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~~La~~~vD~miVVGG~nSSNT~r 305 (387)
T PRK13371 226 RVGVANQTTMLKSETEEIGKLFERTMLRKYGPANLNEHFLSFNTICDATQERQDAMFSLVEEPLDLMVVIGGYNSSNTTH 305 (387)
T ss_pred cEEEEECCCCcHHHHHHHHHHHHHhhhhhcCCccccccccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCccHHH
Confidence 467888988888887777777765433222211 011 2568999999985555555
Q ss_pred -HHHHHHHhhhccCccchhhhH-------------------HhhcCCceEEEEEcCCCCC
Q 022297 237 -GKLVEKTMMRKFGVENMQCIR-------------------WLRKRSILSWLLVGGTRAI 276 (299)
Q Consensus 237 -~~~l~~~~~~~~g~~~~~ei~-------------------~l~~~~vd~~lvvG~~~s~ 276 (299)
.++.+...+..|++++++||+ || .+....+-|..|.-.-
T Consensus 306 L~eia~~~g~~ty~Ie~~~eL~~~~~i~h~~~~~~~~~t~~wl-~~~~~~VGITAGASTP 364 (387)
T PRK13371 306 LQEIAIERGIPSYHIDSPERILSGNSIEHKPLGKELVVTENWL-PEGPVTVGITSGASTP 364 (387)
T ss_pred HHHHHHhcCCCEEEECCHHHcCCccccccccccchhhhhhhhh-ccCCCEEEEecCCCCC
Confidence 456777778899999999993 88 4346677777776443
No 14
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=93.60 E-value=0.78 Score=44.04 Aligned_cols=170 Identities=16% Similarity=0.119 Sum_probs=110.7
Q ss_pred CcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHh--cCcEEecCCccccccccccC-CCEEEEcCCCCCHH-
Q 022297 35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEE--MAVQNIPVEEGKKQFDVVNK-GDVVVLPAFGAAVE- 110 (299)
Q Consensus 35 FC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~--~GV~~v~~~~~~~~~~ei~~-g~~VIIRAHGvs~~- 110 (299)
=|.=|+++-..+.+..++ +-.|...|.==| |.|..-+-. ....++++.+ +++.++. ....++.==-.+.+
T Consensus 98 TCP~V~k~~~~v~~~~~~--Gy~iviiG~~~H-pEv~gi~g~~~~~~~vv~~~~---d~~~l~~~~kv~~vsQTT~~~~~ 171 (281)
T PRK12360 98 TCPFVKKIQNIVEEYYNK--GYSIIIVGDKNH-PEVIGINGWCDNSAYIVNSIE---EVENIPFLDKACVVAQTTIIPEL 171 (281)
T ss_pred CCccchHHHHHHHHHHhC--CCEEEEEcCCCC-ceeeEeccCcCCCeEEECCHH---HHhhCccccCEEEEECCCCcHHH
Confidence 366677777777666654 345777776554 222221111 1133444332 2233322 22334433333433
Q ss_pred ---HHHHHHh--cCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccC----CeEEEEcChhhHHhhh
Q 022297 111 ---EMVTLNN--KNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYVC 181 (299)
Q Consensus 111 ---v~~~l~~--kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~----~~~~vv~~~~e~~~l~ 181 (299)
+.+.|++ ..+.+.|+-|.-...=|+.+++++++=--++++|.++-+-..=+.--| ..++.|++++|++.-
T Consensus 172 ~~~iv~~l~~~~~~~~v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~rL~eia~~~~~~t~~Ie~~~el~~~- 250 (281)
T PRK12360 172 WEDILNVIKLKSKELVFFNTICSATKKRQESAKELSKEVDVMIVIGGKHSSNTQKLVKICEKNCPNTFHIETADELDLE- 250 (281)
T ss_pred HHHHHHHHHHhCcccccCCCcchhhhhHHHHHHHHHHhCCEEEEecCCCCccHHHHHHHHHHHCCCEEEECChHHCCHH-
Confidence 3444444 456679999999999999999999999999999999998888665444 468999999998531
Q ss_pred hhhccCccCCCCccHHHHHHHHHHhhcCCCCCCCCCceeEEEEccccChHHHHHHHHHHHH
Q 022297 182 DYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (299)
Q Consensus 182 ~~~~~~q~~~tt~~~e~f~~~~~~~~~~~~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~l~~ 242 (299)
| + + ...++||++=++=+.+..+++++.|++
T Consensus 251 -~-----------------------~----~---~~~~VGitaGASTP~~li~eV~~~l~~ 280 (281)
T PRK12360 251 -M-----------------------L----K---DYKIIGITAGASTPDWIIEEVIKKIKN 280 (281)
T ss_pred -H-----------------------h----C---CCCEEEEEccCCCCHHHHHHHHHHHHh
Confidence 1 1 1 125899999999999999999888864
No 15
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=92.06 E-value=0.099 Score=50.40 Aligned_cols=74 Identities=11% Similarity=0.148 Sum_probs=53.6
Q ss_pred hhccCccCCCCccHHHHHHHHHHhhcCCCCCCCCCceeEEEEccccCh---------------------HHHHHHHHHHH
Q 022297 183 YILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLK---------------------GETEEIGKLVE 241 (299)
Q Consensus 183 ~~~~~q~~~tt~~~e~f~~~~~~~~~~~~d~~~~~~kv~Iv~QTT~~~---------------------~~~~~i~~~l~ 241 (299)
....+|||.|..+.+++.+.|+..+..- . ......||..||.++ .++.+|.+..+
T Consensus 160 l~~~tQTTls~ddt~~Iv~~l~~r~p~~--~--~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~~nSSNs~rL~eiA~ 235 (294)
T COG0761 160 LAFVTQTTLSVDDTAEIVAALKERFPKI--E--VPPFNDICYATQNRQDAVKELAPEVDLVIVVGSKNSSNSNRLAEIAK 235 (294)
T ss_pred EEEEeeeecCHHHHHHHHHHHHHhCccc--c--CCcccccchhhhhHHHHHHHHhhcCCEEEEECCCCCccHHHHHHHHH
Confidence 4566888888888887777666544210 1 123668999999984 45566677778
Q ss_pred HHhhhccCccchhhhH--Hhh
Q 022297 242 KTMMRKFGVENMQCIR--WLR 260 (299)
Q Consensus 242 ~~~~~~~g~~~~~ei~--~l~ 260 (299)
+.....|.+++++||+ ||.
T Consensus 236 ~~g~~aylId~~~ei~~~w~~ 256 (294)
T COG0761 236 RHGKPAYLIDDAEEIDPEWLK 256 (294)
T ss_pred HhCCCeEEeCChHhCCHHHhc
Confidence 8888899999999995 993
No 16
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=90.46 E-value=0.2 Score=50.98 Aligned_cols=76 Identities=9% Similarity=0.122 Sum_probs=54.3
Q ss_pred hhhccCccCCCCccHHHHHHHHHHhhcCCCCCCC---CC-ceeEEEEccccCh----------------------HHHHH
Q 022297 182 DYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDV---DL-VKVGIANQTTMLK----------------------GETEE 235 (299)
Q Consensus 182 ~~~~~~q~~~tt~~~e~f~~~~~~~~~~~~d~~~---~~-~kv~Iv~QTT~~~----------------------~~~~~ 235 (299)
+..+.+|||++....+++.+.|..+|...+.|.. +. ...+||.+|..++ .++..
T Consensus 300 kvgvvnQTTm~~~et~~I~~~l~~~~~~k~gp~~~~~~~~vfnTIC~ATqeRQdA~~~L~~~~vDlmiVVGG~NSSNT~~ 379 (460)
T PLN02821 300 KVGIANQTTMLKGETEEIGKLLEKTMMQKYGVENVNDHFMSFNTICDATQERQDAMYKLVEEKLDLMLVVGGWNSSNTSH 379 (460)
T ss_pred cEEEEECCCCcHHHHHHHHHHHHHhhhhhcCCcccCccccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCccHHH
Confidence 4567889999988888888888765543332210 11 2569999999884 45555
Q ss_pred HHHHHHHHhhhccCccchhhhH
Q 022297 236 IGKLVEKTMMRKFGVENMQCIR 257 (299)
Q Consensus 236 i~~~l~~~~~~~~g~~~~~ei~ 257 (299)
|.++++......|+++++++|+
T Consensus 380 L~eIa~~~g~~sy~Ie~~~eI~ 401 (460)
T PLN02821 380 LQEIAEHKGIPSYWIDSEERIG 401 (460)
T ss_pred HHHHHHHhCCCEEEECCHHHcC
Confidence 5667777878899999999984
No 17
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=90.02 E-value=4.4 Score=35.82 Aligned_cols=138 Identities=15% Similarity=0.195 Sum_probs=84.1
Q ss_pred chHHHHHHhcCceeeeece-EEEE-----------e-----CCCCCcccHHHHHHHHHHHHh-------hCCCCceEEee
Q 022297 7 SDIIKKLKENGFEYTWGNV-KVKL-----------A-----ESYGFCWGVERAVQIAYEARK-------QFPEEKIWITN 62 (299)
Q Consensus 7 s~~~~~~~~~~~~~~~~~M-~Iil-----------A-----~~~GFC~GVkRAV~~a~~~~~-------~~~~~~VytlG 62 (299)
|++.++|++.|++.-+=+| ++.- . ...++.|==.+||+...+.+. ...+.++|+.|
T Consensus 1 ~~l~~~l~~~G~~~~~~P~i~~~~~~~~~~l~~~l~~l~~~~~d~viftS~~av~~~~~~l~~~~~~~~~~~~~~i~avG 80 (231)
T PF02602_consen 1 SELAALLRALGAEVIELPLIEIEPLPDLASLEAALEQLPPGNYDWVIFTSPNAVRAFFKALQSAGADLRLLKNIKIFAVG 80 (231)
T ss_dssp -HHHHHHHHTTEEEEEEESEEEEECCHHHHHHHHHHHHTGCCSSEEEESSHHHHHHHHHHHHHTTHHHHHHHHSEEEESS
T ss_pred CHHHHHHHHCCCcEEEECCEEEEeCCCHHHHHHHHHhcccCCCCEEEEECHHHHHHHHHHHhhhhhhhhhccCCeEEEEc
Confidence 5778899999987776543 4443 1 556667766777777555443 11135799988
Q ss_pred ccccCHHHHHHHHhcCcEE--ecC-Ccc-c---cccc-cccCCCEEEEcCCCCCHHHHHHHHhcCCeEEeCCC---hhhH
Q 022297 63 EIIHNPTVNKRLEEMAVQN--IPV-EEG-K---KQFD-VVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTC---PWVS 131 (299)
Q Consensus 63 ~LIHN~~Vv~~L~~~GV~~--v~~-~~~-~---~~~~-ei~~g~~VIIRAHGvs~~v~~~l~~kgl~VIDATC---P~V~ 131 (299)
+ ..-+.|++.|+.. +.+ ... . +.+. .+..+.++++|+.+..+...+.|++.|+.|.-..| |-..
T Consensus 81 ~-----~Ta~~l~~~G~~~~~~~~~~~~s~~L~~~l~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~ 155 (231)
T PF02602_consen 81 P-----KTAEALREYGFQPDFVPSSEGSSEGLAELLKEQLRGKRVLILRGEGGRPDLPEKLREAGIEVTEVIVYETPPEE 155 (231)
T ss_dssp H-----HHHHHHHHTT-EECEE-TTSSSHHHHHGGHHHCCTTEEEEEEESSSSCHHHHHHHHHTTEEEEEEECEEEEEHH
T ss_pred H-----HHHHHHHHcCCCccccCCCCCCHHHHHHHHHhhCCCCeEEEEcCCCccHHHHHHHHHCCCeEEEEEEeeccccc
Confidence 5 6678999999997 443 211 1 1112 22223467899999999999999999988744332 3333
Q ss_pred HHHHHHHHHhhCCCeEEE
Q 022297 132 KVWTSVEKHKKGDYTSII 149 (299)
Q Consensus 132 kv~~~v~~~~~~GY~IVI 149 (299)
........+....+.+|+
T Consensus 156 ~~~~~~~~l~~~~~~~v~ 173 (231)
T PF02602_consen 156 LSPELKEALDRGEIDAVV 173 (231)
T ss_dssp HHHHHHHHHHHTTTSEEE
T ss_pred chHHHHHHHHcCCCCEEE
Confidence 444444555555554333
No 18
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=89.48 E-value=3.7 Score=37.75 Aligned_cols=141 Identities=20% Similarity=0.246 Sum_probs=85.7
Q ss_pred cccchHHHHHHhcCceeee-e-----c---eEEEEeCCCCCccc---HHHHHHHHHHHHhhCC-----CCceEEeecccc
Q 022297 4 EYTSDIIKKLKENGFEYTW-G-----N---VKVKLAESYGFCWG---VERAVQIAYEARKQFP-----EEKIWITNEIIH 66 (299)
Q Consensus 4 ~~~s~~~~~~~~~~~~~~~-~-----~---M~IilA~~~GFC~G---VkRAV~~a~~~~~~~~-----~~~VytlG~LIH 66 (299)
++-+++...|+..|++.-. - . ++..+..-.+|++= =.+|++...+.+.... ..++++.|+
T Consensus 11 ~~~~~~~~~l~~~G~~~~~~P~i~~~~~~~l~~~l~~l~~~d~vvfTS~~av~~~~~~l~~~~~~~~~~~~i~aVG~--- 87 (248)
T COG1587 11 EQAEELAALLRKAGAEPLELPLIEIEPLPDLEVALEDLDSADWVVFTSPNAVRFFFEALKEQGLDALKNKKIAAVGE--- 87 (248)
T ss_pred hhhHHHHHHHHhCCCcceeecceeeecchhHHHHHhccccCCEEEEECHHHHHHHHHHHHhhcccccccCeEEEEcH---
Confidence 4567888999999873332 1 2 22223333334432 2566666655554432 258999995
Q ss_pred CHHHHHHHHhcCcEEecCCcc---cccccccc---C-C-CEEEEcCCCCCHHHHHHHHhcCCeEEeC-----CChhhHHH
Q 022297 67 NPTVNKRLEEMAVQNIPVEEG---KKQFDVVN---K-G-DVVVLPAFGAAVEEMVTLNNKNVQIVDT-----TCPWVSKV 133 (299)
Q Consensus 67 N~~Vv~~L~~~GV~~v~~~~~---~~~~~ei~---~-g-~~VIIRAHGvs~~v~~~l~~kgl~VIDA-----TCP~V~kv 133 (299)
.--+.|++.|+...--.++ ...++.++ . | .++++|++|..+...+.|.++|..+... .+|... .
T Consensus 88 --~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~-~ 164 (248)
T COG1587 88 --KTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGGREVLEEKLEERGAEVREVEVYRTEPPPLD-E 164 (248)
T ss_pred --HHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCchHHHHHHHHhCCCEEEEEeeeeecCCCcc-H
Confidence 6779999999876543221 11222232 2 2 4578999999999999999999998544 334443 5
Q ss_pred HHHHHHHhhCCCeEEEE
Q 022297 134 WTSVEKHKKGDYTSIIH 150 (299)
Q Consensus 134 ~~~v~~~~~~GY~IVIi 150 (299)
+.....+..++..+|++
T Consensus 165 ~~~~~~~~~~~~d~v~f 181 (248)
T COG1587 165 ATLIELLKLGEVDAVVF 181 (248)
T ss_pred HHHHHHHHhCCCCEEEE
Confidence 55566666666554443
No 19
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=86.69 E-value=6.3 Score=34.87 Aligned_cols=144 Identities=15% Similarity=0.147 Sum_probs=85.6
Q ss_pred ccccchHHHHHHhcCceeeeece-EE-------------EEeCCCCCcccHHHHHHHHHHHHhh-----CCCCceEEeec
Q 022297 3 QEYTSDIIKKLKENGFEYTWGNV-KV-------------KLAESYGFCWGVERAVQIAYEARKQ-----FPEEKIWITNE 63 (299)
Q Consensus 3 ~~~~s~~~~~~~~~~~~~~~~~M-~I-------------ilA~~~GFC~GVkRAV~~a~~~~~~-----~~~~~VytlG~ 63 (299)
++..+++.+.|++.|+++..-++ ++ .+....+++|==.+|++...+.+.+ ..+.++|+.|+
T Consensus 10 ~~~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~~~~~~~avG~ 89 (249)
T PRK05928 10 SPKAEELVELLRELGFVALHFPLIEIEPGRQLPQLAAQLAALGADWVIFTSKNAVEFLLSALKKKKLKWPKNKKYAAIGE 89 (249)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccEEEecCCCcChHHHHhhCCCCCEEEEECHHHHHHHHHHHHhcCcCCCCCCEEEEECH
Confidence 34567888999999977766543 33 2234456777778888887666541 22457999996
Q ss_pred cccCHHHHHHHHhcCcEEec--CC-ccc---cccccc-cCC-CEEEEcCCCCCHHHHHHHHhcCCeEEeC----CChhhH
Q 022297 64 IIHNPTVNKRLEEMAVQNIP--VE-EGK---KQFDVV-NKG-DVVVLPAFGAAVEEMVTLNNKNVQIVDT----TCPWVS 131 (299)
Q Consensus 64 LIHN~~Vv~~L~~~GV~~v~--~~-~~~---~~~~ei-~~g-~~VIIRAHGvs~~v~~~l~~kgl~VIDA----TCP~V~ 131 (299)
..-+.|++.|+...- .. +.. +.+.+. ..| .++++|+-+..+...+.|++.|..++-. +||...
T Consensus 90 -----~Ta~~l~~~G~~~~~~~~~~~~~~l~~~l~~~~~~~~~ili~~~~~~~~~l~~~L~~~G~~v~~~~~Y~~~~~~~ 164 (249)
T PRK05928 90 -----KTALALKKLGGKVVFVPEDGESSELLLELPELLLKGKRVLYLRGNGGREVLGDTLEERGAEVDECEVYERVPPKL 164 (249)
T ss_pred -----HHHHHHHHcCCCccccCCCCcChHHHHhChhhhcCCCEEEEECCCCCHHHHHHHHHHCCCEEeEEEEEEeeCCCC
Confidence 455899999987541 11 111 111111 123 3567787777888899999999876432 333222
Q ss_pred HHHHHHHHHhhCCCeEEEEe
Q 022297 132 KVWTSVEKHKKGDYTSIIHG 151 (299)
Q Consensus 132 kv~~~v~~~~~~GY~IVIiG 151 (299)
........+...++..|++-
T Consensus 165 ~~~~~~~~~~~~~~d~ivft 184 (249)
T PRK05928 165 DGAELLARLQSGEVDAVIFT 184 (249)
T ss_pred ChHHHHHHHHhCCCCEEEEC
Confidence 22233333334455555554
No 20
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=83.84 E-value=13 Score=35.78 Aligned_cols=126 Identities=9% Similarity=0.019 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCE--EEEcCCCCCHHHHHHHHh
Q 022297 40 ERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDV--VVLPAFGAAVEEMVTLNN 117 (299)
Q Consensus 40 kRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~--VIIRAHGvs~~v~~~l~~ 117 (299)
|.-.+++...++. +-.|+.+ =+|+..+++|.+.|....++.++ .+..++...+ |+++|--+++++.+.|..
T Consensus 10 rMG~n~v~rl~~~--ghdvV~y---D~n~~av~~~~~~ga~~a~sl~e--l~~~L~~pr~vWlMvPag~it~~vi~~la~ 82 (300)
T COG1023 10 RMGANLVRRLLDG--GHDVVGY---DVNQTAVEELKDEGATGAASLDE--LVAKLSAPRIVWLMVPAGDITDAVIDDLAP 82 (300)
T ss_pred hhhHHHHHHHHhC--CCeEEEE---cCCHHHHHHHHhcCCccccCHHH--HHHhcCCCcEEEEEccCCCchHHHHHHHHh
Confidence 3445677777764 3356666 48999999999999776655322 2344544444 445544499999988764
Q ss_pred ---cCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccC-CeEEEEcChhhH
Q 022297 118 ---KNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA-GKYIIVKNMKEA 177 (299)
Q Consensus 118 ---kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~-~~~~vv~~~~e~ 177 (299)
.|=.|||+--.+-+-.+++++++.++|.+-+=+|-.+ |+-|-- +-++.|..++++
T Consensus 83 ~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSG-----G~~G~~~G~~lMiGG~~~a 141 (300)
T COG1023 83 LLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSG-----GVWGAERGYCLMIGGDEEA 141 (300)
T ss_pred hcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCC-----CchhhhcCceEEecCcHHH
Confidence 7999999999999999999999999999999988554 233322 335677665554
No 21
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=83.10 E-value=24 Score=34.65 Aligned_cols=200 Identities=16% Similarity=0.133 Sum_probs=105.6
Q ss_pred eEEEEeCCCCCccc---HHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEE
Q 022297 25 VKVKLAESYGFCWG---VERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVV 101 (299)
Q Consensus 25 M~IilA~~~GFC~G---VkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VI 101 (299)
|+|.+---.|.-.| |.|-..+|....+. +-.-+|.-++.+-+ +.-. ...|..+..-... .++.+. +.|.||
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~-~~~~~fl~k~~~e~--~~~~-~~~~f~~~~~~~~-n~ik~~-k~d~lI 74 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKR-GFACLFLTKQDIEA--IIHK-VYEGFKVLEGRGN-NLIKEE-KFDLLI 74 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhc-CceEEEecccchhh--hhhh-hhhhccceeeecc-cccccc-cCCEEE
Confidence 55554434444444 89999999887764 22346666655443 1112 1223333221100 112222 368899
Q ss_pred EcCCCCCHHHHHHHH-hcCC--eEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccCC-eEEEEcChhhH
Q 022297 102 LPAFGAAVEEMVTLN-NKNV--QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEA 177 (299)
Q Consensus 102 IRAHGvs~~v~~~l~-~kgl--~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~~-~~~vv~~~~e~ 177 (299)
|-+-|++.+..+.++ +.|. -++|.-|+.--+=-..+-... +|+..| -|+.+ ++-+...+.
T Consensus 75 ~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~d~d~ivN~~--------~~a~~~------y~~v~~k~~~~lGp~-- 138 (318)
T COG3980 75 FDSYGLNADDFKLIKEEAGSKILIFDDENAKSFKDNDLIVNAI--------LNANDY------YGLVPNKTRYYLGPG-- 138 (318)
T ss_pred EeccCCCHHHHHHHHHHhCCcEEEecCCCccchhhhHhhhhhh--------hcchhh------ccccCcceEEEecCC--
Confidence 999999999999998 5554 458999886443111111100 011000 00111 122222221
Q ss_pred HhhhhhhccCccCCCCccHHHHHHHHHHhhcCCCCCCCCCceeEEEEccccChHHHHHHHHHHHHHhhhccCccchhhhH
Q 022297 178 EYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIR 257 (299)
Q Consensus 178 ~~l~~~~~~~q~~~tt~~~e~f~~~~~~~~~~~~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~~~ei~ 257 (299)
|+.. ++.|++ .++...+ ++-.++.|+.=-|-...-+-+++++|.
T Consensus 139 -----y~~l---------r~eF~~-~r~~~~~-----r~~r~ilI~lGGsDpk~lt~kvl~~L~---------------- 182 (318)
T COG3980 139 -----YAPL---------RPEFYA-LREENTE-----RPKRDILITLGGSDPKNLTLKVLAELE---------------- 182 (318)
T ss_pred -----ceec---------cHHHHH-hHHHHhh-----cchheEEEEccCCChhhhHHHHHHHhh----------------
Confidence 1111 344555 3332221 112357777766766667777766653
Q ss_pred HhhcCCceEEEEEcCCCCCcchhHhhhhccc
Q 022297 258 WLRKRSILSWLLVGGTRAIPHTFKRLQKTVE 288 (299)
Q Consensus 258 ~l~~~~vd~~lvvG~~~s~~~~~~~~~~~~~ 288 (299)
.+.+-+++|+| |++.+.+-|+|+.+
T Consensus 183 ---~~~~nl~iV~g---s~~p~l~~l~k~~~ 207 (318)
T COG3980 183 ---QKNVNLHIVVG---SSNPTLKNLRKRAE 207 (318)
T ss_pred ---ccCeeEEEEec---CCCcchhHHHHHHh
Confidence 23367899999 88999999999865
No 22
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=81.54 E-value=5.9 Score=37.17 Aligned_cols=107 Identities=14% Similarity=0.143 Sum_probs=65.1
Q ss_pred HHHHHHHHhcCc---EEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCeE-EeCCChhhHHHHHHHHHHhhC
Q 022297 68 PTVNKRLEEMAV---QNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKG 143 (299)
Q Consensus 68 ~~Vv~~L~~~GV---~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~V-IDATCP~V~kv~~~v~~~~~~ 143 (299)
..+.+.|.+.|. .++.+-.. +....-..+..|.+-.-|=..+..+.++++++.. ||||=||=..+++.|.+.+++
T Consensus 13 r~la~~L~~~g~v~~sv~t~~g~-~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~ 91 (249)
T PF02571_consen 13 RKLAERLAEAGYVIVSVATSYGG-ELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRE 91 (249)
T ss_pred HHHHHHHHhcCCEEEEEEhhhhH-hhhccccCCceEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhh
Confidence 456677777773 33332111 0111111123467777776777888889899875 999999999999999998875
Q ss_pred -CCeEEEEecCCCcceeeecccCCeEEEEcChhhHHhh
Q 022297 144 -DYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180 (299)
Q Consensus 144 -GY~IVIiGd~~HPEV~Gi~g~~~~~~vv~~~~e~~~l 180 (299)
|-..+=+-.+.=+.. -.++.+.+.|.+|+...
T Consensus 92 ~~ipylR~eRp~~~~~-----~~~~~~~v~~~~eA~~~ 124 (249)
T PF02571_consen 92 LGIPYLRFERPSWQPE-----PDDNWHYVDSYEEAAEL 124 (249)
T ss_pred cCcceEEEEcCCcccC-----CCCeEEEeCCHHHHHHH
Confidence 544444443321100 01346777888777543
No 23
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=81.43 E-value=7.1 Score=36.66 Aligned_cols=106 Identities=13% Similarity=0.178 Sum_probs=61.3
Q ss_pred HHHHHHHHhcCcEEecCCc-cccccccccCCCEEEEcCCCCCHHHHHHHHhcCCeE-EeCCChhhHHHHHHHHHHhhC-C
Q 022297 68 PTVNKRLEEMAVQNIPVEE-GKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKG-D 144 (299)
Q Consensus 68 ~~Vv~~L~~~GV~~v~~~~-~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~V-IDATCP~V~kv~~~v~~~~~~-G 144 (299)
+++.+.|.+.|+.++-+.. +..... ..+..|..-.-|=..+..+.+++.++.. ||||=||=..+.+.+.+.+++ |
T Consensus 15 r~la~~L~~~g~~v~~Svat~~g~~~--~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ 92 (248)
T PRK08057 15 RALARALAAAGVDIVLSLAGRTGGPA--DLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALG 92 (248)
T ss_pred HHHHHHHHhCCCeEEEEEccCCCCcc--cCCceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhC
Confidence 4455666666665543221 111111 1122344444444567777888888765 999999999999999998775 5
Q ss_pred CeEEEEecCCCcceeeecccCCeEEEEcChhhHHhh
Q 022297 145 YTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180 (299)
Q Consensus 145 Y~IVIiGd~~HPEV~Gi~g~~~~~~vv~~~~e~~~l 180 (299)
-..+=+-.+ +.. ..-.+..+.+.+.+|+..+
T Consensus 93 ipyiR~eR~---~~~--~~~~~~~~~v~s~~~a~~~ 123 (248)
T PRK08057 93 IPYLRLERP---SWL--PQPGDRWIEVDDIEEAAEA 123 (248)
T ss_pred CcEEEEeCC---CcC--CCCCCCEEEECCHHHHHHH
Confidence 555544432 210 0001345777888876553
No 24
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=80.46 E-value=35 Score=31.28 Aligned_cols=116 Identities=10% Similarity=0.133 Sum_probs=71.7
Q ss_pred cccchHHHHHHhcCceeeeece-EEEEeC-----------CCCCcccH---HHHHHHHHHHHhhC----CCCceEEeecc
Q 022297 4 EYTSDIIKKLKENGFEYTWGNV-KVKLAE-----------SYGFCWGV---ERAVQIAYEARKQF----PEEKIWITNEI 64 (299)
Q Consensus 4 ~~~s~~~~~~~~~~~~~~~~~M-~IilA~-----------~~GFC~GV---kRAV~~a~~~~~~~----~~~~VytlG~L 64 (299)
+..+++.++|++.|++.-.-+| +|.-.. -..|.+=| .+||+...+.+.+. +..++|+.|+
T Consensus 13 ~~~~~l~~~l~~~G~~~~~~P~i~i~p~~~~~~~~~~l~~l~~~d~iifTS~naV~~~~~~l~~~~~~~~~~~~~aVG~- 91 (255)
T PRK05752 13 EECAALAASLAEAGIFSSSLPLLAIEPLPETPEQRALLLELDRYCAVIVVSKPAARLGLELLDRYWPQPPQQPWFSVGA- 91 (255)
T ss_pred HHHHHHHHHHHHcCCCEEEcCcEEEeeCCCCHHHHHHHhcCCCCCEEEEECHHHHHHHHHHHHhhCCCCcCCEEEEECH-
Confidence 4567889999999977655433 443211 12333322 67777766655432 1247899995
Q ss_pred ccCHHHHHHHHhcCcEEec--CC-ccc---cc--cccc--cCC-CEEEEcCCCCCHHHHHHHHhcCCeEEe
Q 022297 65 IHNPTVNKRLEEMAVQNIP--VE-EGK---KQ--FDVV--NKG-DVVVLPAFGAAVEEMVTLNNKNVQIVD 124 (299)
Q Consensus 65 IHN~~Vv~~L~~~GV~~v~--~~-~~~---~~--~~ei--~~g-~~VIIRAHGvs~~v~~~l~~kgl~VID 124 (299)
..-+.|++.|+.+.- .. +.. +. +.+. .+| .++++|+.+-++...+.|+++|..|..
T Consensus 92 ----~Ta~al~~~G~~~~~~p~~~~se~Ll~~~~l~~~~~~~~~~vLi~rg~~~r~~L~~~L~~~G~~v~~ 158 (255)
T PRK05752 92 ----ATAAILQDYGLDVSYPEQGDDSEALLALPALRQALAVPDPRVLIMRGEGGRELLAERLREQGASVDY 158 (255)
T ss_pred ----HHHHHHHHcCCCcccCCCCCCcHHHHhChhhhccccCCCCEEEEEccCccHHHHHHHHHHCCCEEeE
Confidence 566889999987432 11 111 11 1111 133 467899999999999999999977644
No 25
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=80.22 E-value=2.3 Score=32.79 Aligned_cols=33 Identities=24% Similarity=0.469 Sum_probs=25.1
Q ss_pred EcCCCCCHH----HHHHHHhcCCeEEeCCChhhHHHHH
Q 022297 102 LPAFGAAVE----EMVTLNNKNVQIVDTTCPWVSKVWT 135 (299)
Q Consensus 102 IRAHGvs~~----v~~~l~~kgl~VIDATCP~V~kv~~ 135 (299)
+|-+|+... ..+.+++.|++|+ ++||||.+--+
T Consensus 34 ~rGqGia~~L~~~~l~~a~~~~~kv~-p~C~y~~~~~~ 70 (78)
T PF14542_consen 34 LRGQGIAKKLVEAALDYARENGLKVV-PTCSYVAKYFR 70 (78)
T ss_dssp SSTTTHHHHHHHHHHHHHHHTT-EEE-ETSHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHCCCEEE-EECHHHHHHHH
Confidence 566788755 4667888999998 99999987654
No 26
>PRK09453 phosphodiesterase; Provisional
Probab=79.83 E-value=17 Score=31.42 Aligned_cols=45 Identities=16% Similarity=0.105 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhCCCCceEEeeccccC------------HHHHHHHHhcC--cEEecCC
Q 022297 41 RAVQIAYEARKQFPEEKIWITNEIIHN------------PTVNKRLEEMA--VQNIPVE 85 (299)
Q Consensus 41 RAV~~a~~~~~~~~~~~VytlG~LIHN------------~~Vv~~L~~~G--V~~v~~~ 85 (299)
.|++.+.+.+++.+...|+.+|+|++- +.+.+.|++.| +..|...
T Consensus 14 ~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~V~GN 72 (182)
T PRK09453 14 PATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYADKIIAVRGN 72 (182)
T ss_pred HHHHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhcCCceEEEccC
Confidence 355555555543334579999999962 45788888886 6666544
No 27
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=77.16 E-value=14 Score=38.85 Aligned_cols=106 Identities=14% Similarity=0.213 Sum_probs=75.0
Q ss_pred ccHHHHHHHHHHHHhhCCCCceEEeecc-----ccCHHHHHHHHhcCcEEec-CCccccccccccCCCEEEEcCCCCCHH
Q 022297 37 WGVERAVQIAYEARKQFPEEKIWITNEI-----IHNPTVNKRLEEMAVQNIP-VEEGKKQFDVVNKGDVVVLPAFGAAVE 110 (299)
Q Consensus 37 ~GVkRAV~~a~~~~~~~~~~~VytlG~L-----IHN~~Vv~~L~~~GV~~v~-~~~~~~~~~ei~~g~~VIIRAHGvs~~ 110 (299)
.+.++|++...+++.+ +++|.++|+- -=---..+.|++.|...+. -+ .+.+.+ -||++++
T Consensus 53 ~~m~~a~~ri~~ai~~--~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~~I-----P~R~~e-------GYGl~~~ 118 (575)
T PRK11070 53 SGIEKAVELLYNALRE--GTRIIVVGDFDADGATSTALSVLALRSLGCSNVDYLV-----PNRFED-------GYGLSPE 118 (575)
T ss_pred hCHHHHHHHHHHHHHC--CCEEEEEEecCccHHHHHHHHHHHHHHcCCCceEEEe-----CCCCcC-------CCCCCHH
Confidence 4899999999888875 4689999873 1112346677888773221 00 011122 3899999
Q ss_pred HHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcc
Q 022297 111 EMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEE 157 (299)
Q Consensus 111 v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPE 157 (299)
..+++.+.|..+| =||=.-...+..++.+.+.|..|||.-+...|+
T Consensus 119 ~i~~~~~~~~~Li-ItvD~Gi~~~e~i~~a~~~gidvIVtDHH~~~~ 164 (575)
T PRK11070 119 VVDQAHARGAQLI-VTVDNGISSHAGVAHAHALGIPVLVTDHHLPGE 164 (575)
T ss_pred HHHHHHhcCCCEE-EEEcCCcCCHHHHHHHHHCCCCEEEECCCCCCC
Confidence 9999999887665 466666778889988899999999998765443
No 28
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=76.68 E-value=19 Score=30.74 Aligned_cols=97 Identities=11% Similarity=0.033 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHh---
Q 022297 41 RAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNN--- 117 (299)
Q Consensus 41 RAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~--- 117 (299)
..-.+|..+++. +-+|+.+. .++...++|.+.|+...++. .++.++.-+||.+---++++.+-+..
T Consensus 12 mG~~~a~~L~~~--g~~v~~~d---~~~~~~~~~~~~g~~~~~s~------~e~~~~~dvvi~~v~~~~~v~~v~~~~~i 80 (163)
T PF03446_consen 12 MGSAMARNLAKA--GYEVTVYD---RSPEKAEALAEAGAEVADSP------AEAAEQADVVILCVPDDDAVEAVLFGENI 80 (163)
T ss_dssp HHHHHHHHHHHT--TTEEEEEE---SSHHHHHHHHHTTEEEESSH------HHHHHHBSEEEE-SSSHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHhc--CCeEEeec---cchhhhhhhHHhhhhhhhhh------hhHhhcccceEeecccchhhhhhhhhhHH
Confidence 344566666654 34677765 67899999999999988753 33333323666665555555555443
Q ss_pred -----cCCeEEeCCChhhHHHHHHHHHHhhCCCeEE
Q 022297 118 -----KNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (299)
Q Consensus 118 -----kgl~VIDATCP~V~kv~~~v~~~~~~GY~IV 148 (299)
.|-.+||.|=-.....++.++++.++|-..|
T Consensus 81 ~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~v 116 (163)
T PF03446_consen 81 LAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYV 116 (163)
T ss_dssp GGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEE
T ss_pred hhccccceEEEecCCcchhhhhhhhhhhhhccceee
Confidence 7889999999999999999999999995544
No 29
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=75.13 E-value=22 Score=32.09 Aligned_cols=122 Identities=11% Similarity=0.036 Sum_probs=73.4
Q ss_pred ccccchHHHHHHhcCceeeeece-EEE---------EeC-CCCCcccHHHHHHHHHHH---HhhCCCCceEEeeccccCH
Q 022297 3 QEYTSDIIKKLKENGFEYTWGNV-KVK---------LAE-SYGFCWGVERAVQIAYEA---RKQFPEEKIWITNEIIHNP 68 (299)
Q Consensus 3 ~~~~s~~~~~~~~~~~~~~~~~M-~Ii---------lA~-~~GFC~GVkRAV~~a~~~---~~~~~~~~VytlG~LIHN~ 68 (299)
.++.+.+.++|++.|++.-.-+| ++. +.. .....|==.+||+.+.+. +....+.++|+.|+=
T Consensus 9 ~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iifTS~naV~~~~~~~~~~~~~~~~~~~aVG~~---- 84 (240)
T PRK09189 9 EPAAERTAARLRAMGHEPVLLPLSRPVHDVAAAFTALSEPHGAIAVTSAEAVRHLAALGERLLPHLALPLFAVGEA---- 84 (240)
T ss_pred CCchHHHHHHHHHCCCceEEecccccccChhhhhhhhcCCcCEEEEECHHHHHHHHhcchhhHHhcCCeEEEEcHH----
Confidence 34567788999999966655432 332 111 123344447777775442 111224579999964
Q ss_pred HHHHHHHhcCcEEec-CCcccccc-c----cc-cCCCEEEEcCCCCCHHHHHHHHhcCCeE-----EeCCChh
Q 022297 69 TVNKRLEEMAVQNIP-VEEGKKQF-D----VV-NKGDVVVLPAFGAAVEEMVTLNNKNVQI-----VDTTCPW 129 (299)
Q Consensus 69 ~Vv~~L~~~GV~~v~-~~~~~~~~-~----ei-~~g~~VIIRAHGvs~~v~~~l~~kgl~V-----IDATCP~ 129 (299)
.-+.|++.|+..+- ....-+++ + .. +.+.++++|+-+..+...+.|+++|+.| +++.||-
T Consensus 85 -Ta~~l~~~G~~~~~~~~~~~e~L~~~~~~~~~~~~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~vY~~~~~~ 156 (240)
T PRK09189 85 -TAEAARELGFRHVIEGGGDGVRLAETVAAALAPTARLLYLAGRPRAPVFEDRLAAAGIPFRVAECYDMLPVM 156 (240)
T ss_pred -HHHHHHHcCCCCCcCCCCCHHHHHHHHHHhcCCCCcEEEeccCcccchhHHHHHhCCCeeEEEEEEEeecCC
Confidence 55889999987332 11111111 1 11 2244689999999999999999999765 6655553
No 30
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=72.61 E-value=7.4 Score=34.30 Aligned_cols=45 Identities=13% Similarity=0.020 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCeE-EeCCChhhHHHHHHHHHHhhCCCeEEEEecC
Q 022297 109 VEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKY 153 (299)
Q Consensus 109 ~~v~~~l~~kgl~V-IDATCP~V~kv~~~v~~~~~~GY~IVIiGd~ 153 (299)
...++.+.+++..| +|+||..-....+.++.+.+.||+|.++-=.
T Consensus 83 ~~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~ 128 (199)
T PF06414_consen 83 EKLIEYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVA 128 (199)
T ss_dssp HHHHHHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE-
T ss_pred HHHHHHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEE
Confidence 45667776766665 8999999999999999999999999887633
No 31
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=72.23 E-value=15 Score=31.50 Aligned_cols=134 Identities=16% Similarity=0.095 Sum_probs=70.0
Q ss_pred HHHHHHHhhCCCeEEEEecCCCcce-eeecccCCeEEEEcChhhHHhhhhhhccCccCCCCccHHHHHHH--HHHhhcCC
Q 022297 134 WTSVEKHKKGDYTSIIHGKYSHEET-VATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEK--FKKAVSKG 210 (299)
Q Consensus 134 ~~~v~~~~~~GY~IVIiGd~~HPEV-~Gi~g~~~~~~vv~~~~e~~~l~~~~~~~q~~~tt~~~e~f~~~--~~~~~~~~ 210 (299)
...++++.+.||.|.++- ++ ||- ..... ..+.+..+++|+-.-++.++.. -.+....++.+.. +...+.
T Consensus 14 ~~~a~~L~~~g~~v~~~d-~~-~~~~~~~~~--~g~~~~~s~~e~~~~~dvvi~~--v~~~~~v~~v~~~~~i~~~l~-- 85 (163)
T PF03446_consen 14 SAMARNLAKAGYEVTVYD-RS-PEKAEALAE--AGAEVADSPAEAAEQADVVILC--VPDDDAVEAVLFGENILAGLR-- 85 (163)
T ss_dssp HHHHHHHHHTTTEEEEEE-SS-HHHHHHHHH--TTEEEESSHHHHHHHBSEEEE---SSSHHHHHHHHHCTTHGGGS---
T ss_pred HHHHHHHHhcCCeEEeec-cc-hhhhhhhHH--hhhhhhhhhhhHhhcccceEee--cccchhhhhhhhhhHHhhccc--
Confidence 456788888999987763 32 222 11111 1255566666665444433321 0111222333332 211111
Q ss_pred CCCCCCCceeEEEEccccChHHHHHHHHHHHHHhhhccCccchhhhHHhhcCCceEEEEEcCCCCCcchhHhhhhcc
Q 022297 211 FDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIRWLRKRSILSWLLVGGTRAIPHTFKRLQKTV 287 (299)
Q Consensus 211 ~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~~~ei~~l~~~~vd~~lvvG~~~s~~~~~~~~~~~~ 287 (299)
..-.++.-||.+.+..+++.+.+......+...-..---.. +..=.+.+.+||... +|+|++.-+
T Consensus 86 -------~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~--a~~g~l~~~~gG~~~---~~~~~~~~l 150 (163)
T PF03446_consen 86 -------PGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPG--AEEGTLTIMVGGDEE---AFERVRPLL 150 (163)
T ss_dssp -------TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHH--HHHTTEEEEEES-HH---HHHHHHHHH
T ss_pred -------cceEEEecCCcchhhhhhhhhhhhhccceeeeeeeeccccc--ccccceEEEccCCHH---HHHHHHHHH
Confidence 23478999999999999999999887766654322111111 333457888998754 677776543
No 32
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=71.17 E-value=31 Score=33.32 Aligned_cols=88 Identities=14% Similarity=0.119 Sum_probs=52.1
Q ss_pred cccHHHHHHHHHHHHhhCCCC--ceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccC-C-CEEEEcCCCCCHHH
Q 022297 36 CWGVERAVQIAYEARKQFPEE--KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNK-G-DVVVLPAFGAAVEE 111 (299)
Q Consensus 36 C~GVkRAV~~a~~~~~~~~~~--~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~-g-~~VIIRAHGvs~~v 111 (299)
|+.+.-+.+.+.+++.+.+.. ++-..-+-==+|..++.|.++--.. ++..+. + ..|+|.|||+|...
T Consensus 132 ~~t~gs~~~~~~~~l~~~~~~~~~~~~i~~~~~~p~yi~a~~~~I~~~---------l~~~~~~~~~~llfSaHglP~~~ 202 (322)
T TIGR00109 132 SSTTGSSFNELAEALKKLRSLRPTISVIESWYDNPKYIKALADSIKET---------LASFPEPDNAVLLFSAHGLPQSY 202 (322)
T ss_pred cccHHHHHHHHHHHHHhcccCCCeEEEeCccccCcHHHHHHHHHHHHH---------HHhcCCcCCcEEEEeCCCCchhH
Confidence 566666677776666554221 3333333334666766665531111 111211 2 26999999999887
Q ss_pred HHHHHhcCCeEEeCCChhhHHHHHHHHHHhhC
Q 022297 112 MVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKG 143 (299)
Q Consensus 112 ~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~ 143 (299)
.++ | .|+...++..++.+.++
T Consensus 203 ~~~----G-------d~Y~~~~~~ta~~l~~~ 223 (322)
T TIGR00109 203 VDE----G-------DPYPAECEATTRLIAEK 223 (322)
T ss_pred hhC----C-------CChHHHHHHHHHHHHHH
Confidence 754 3 57888888888777664
No 33
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=70.91 E-value=16 Score=31.78 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhCC--CCceEEeeccccCHHHHHHHHhcCcEEec
Q 022297 40 ERAVQIAYEARKQFP--EEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (299)
Q Consensus 40 kRAV~~a~~~~~~~~--~~~VytlG~LIHN~~Vv~~L~~~GV~~v~ 83 (299)
++-|..+.+++++.. ..+.|..----.|+.+++.|++.|..++.
T Consensus 80 ~~ei~~~~~~l~~~~g~~~~~fr~P~G~~~~~~~~~l~~~G~~~v~ 125 (191)
T TIGR02764 80 KKDILRAQEIIEKLTGKKPTLFRPPSGAFNKAVLKAAESLGYTVVH 125 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEECCCcCCCHHHHHHHHHcCCeEEE
Confidence 344444445544321 12345544445799999999999998765
No 34
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=69.01 E-value=20 Score=33.72 Aligned_cols=105 Identities=13% Similarity=0.153 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHH-HHHHhcCCe-EEeCCChhhHHHHHHHHHHhhC-C
Q 022297 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEM-VTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKG-D 144 (299)
Q Consensus 68 ~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~-~~l~~kgl~-VIDATCP~V~kv~~~v~~~~~~-G 144 (299)
..+.+.|.+.|..++-..-....-..+.....+-++.-+...+.+ +.+++.++. |||||=||=..+.+.+.+.+++ |
T Consensus 13 r~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ 92 (256)
T TIGR00715 13 RAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELG 92 (256)
T ss_pred HHHHHHHHhCCCeEEEEEccCCccccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhC
Confidence 345567777776554321111111122221112233334444444 677776665 5999999999999999887765 6
Q ss_pred CeEEEEecCCCcceeeecccCCeEEEEcChhhHHh
Q 022297 145 YTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEY 179 (299)
Q Consensus 145 Y~IVIiGd~~HPEV~Gi~g~~~~~~vv~~~~e~~~ 179 (299)
-..+=+-.+ +.. -.+..+.+.+.+++..
T Consensus 93 ipylR~eR~---~~~----~~~~~~~v~~~~ea~~ 120 (256)
T TIGR00715 93 IPYVRFERP---PLA----LGKNIIEVPDIEEATR 120 (256)
T ss_pred CcEEEEECC---CCC----CCCCeEEeCCHHHHHH
Confidence 555555432 210 0124566777777543
No 35
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=67.38 E-value=19 Score=35.20 Aligned_cols=107 Identities=19% Similarity=0.186 Sum_probs=62.0
Q ss_pred CCCceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCC----------------HHH---HHH
Q 022297 54 PEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAA----------------VEE---MVT 114 (299)
Q Consensus 54 ~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs----------------~~v---~~~ 114 (299)
.+++||++|.- -..+.|++.|+......++.. ++ +++.=.+..|+.. ++. ...
T Consensus 105 ~~k~Vyvig~~----gi~~eL~~aG~~~~g~~~~~~--~~--~~~~~~~~~~~~d~~VgAVvvg~D~hfsy~KL~kA~~y 176 (306)
T KOG2882|consen 105 FGKKVYVIGEE----GIREELDEAGFEYFGGGPDGK--DT--DGAKSFVLSIGLDPDVGAVVVGYDEHFSYPKLMKALNY 176 (306)
T ss_pred CCCeEEEecch----hhhHHHHHcCceeecCCCCcc--cc--cccccchhhcCCCCCCCEEEEecccccCHHHHHHHHHH
Confidence 35789999985 466799999998876432210 11 0111123333332 222 345
Q ss_pred HHhcCCeEE----eCCCh------------hhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccC----CeEEEEcCh
Q 022297 115 LNNKNVQIV----DTTCP------------WVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNM 174 (299)
Q Consensus 115 l~~kgl~VI----DATCP------------~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~----~~~~vv~~~ 174 (299)
|++=++..+ |+||| +|..+.. .-|.+-+++|+++-+=..-+..-. .++..|.+-
T Consensus 177 LqnP~clflatn~D~~~p~~~~~~ipG~G~~v~av~~------~t~R~P~v~GKP~~~m~~~l~~~~~i~psRt~mvGDR 250 (306)
T KOG2882|consen 177 LQNPGCLFLATNRDATTPPTPGVEIPGAGSFVAAVKF------ATGRQPIVLGKPSTFMFEYLLEKFNIDPSRTCMVGDR 250 (306)
T ss_pred hCCCCcEEEeccCccccCCCCCeeccCCccHHHHHHH------HhcCCCeecCCCCHHHHHHHHHHcCCCcceEEEEccc
Confidence 566677775 99999 4554443 336678999999876554443322 246666553
No 36
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=65.94 E-value=11 Score=36.35 Aligned_cols=50 Identities=12% Similarity=0.179 Sum_probs=41.6
Q ss_pred CCCcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEec
Q 022297 33 YGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (299)
Q Consensus 33 ~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~ 83 (299)
..|-..|.|+|+.+.++.++. +.+|.+.|++.+||..+..|-.+||..+.
T Consensus 227 d~~~Pavl~li~~vi~~a~~~-g~~vsvCGe~a~~p~~~~~Ll~lGi~~lS 276 (293)
T PF02896_consen 227 DPLHPAVLRLIKQVIDAAHKA-GKPVSVCGEMASDPEAIPLLLGLGIRSLS 276 (293)
T ss_dssp -TTSHHHHHHHHHHHHHHHHT-T-EEEEESGGGGSHHHHHHHHHHT-SEEE
T ss_pred CcchHHHHHHHHHHHHHHhhc-CcEEEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 345678999999998888765 57999999999999999999999998775
No 37
>PRK10444 UMP phosphatase; Provisional
Probab=65.46 E-value=52 Score=30.51 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=22.4
Q ss_pred HHhhCCCCceEEeeccccCHHHHHHHHhcCcEEe
Q 022297 49 ARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNI 82 (299)
Q Consensus 49 ~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v 82 (299)
.+++.++.++|.+|+ +...+.|++.|+...
T Consensus 76 ~L~~~~~~~v~~~g~----~~l~~~l~~~g~~~~ 105 (248)
T PRK10444 76 FLRRQEGKKAYVIGE----GALIHELYKAGFTIT 105 (248)
T ss_pred HHHhCCCCEEEEEcC----HHHHHHHHHCcCEec
Confidence 333333457999998 788999999998755
No 38
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=62.04 E-value=6.4 Score=36.69 Aligned_cols=39 Identities=26% Similarity=0.234 Sum_probs=36.1
Q ss_pred HhhcCCceEEEEEcCCCCCcchhHhhhhccccCCccccc
Q 022297 258 WLRKRSILSWLLVGGTRAIPHTFKRLQKTVEFPHTGSIV 296 (299)
Q Consensus 258 ~l~~~~vd~~lvvG~~~s~~~~~~~~~~~~~~~~~~~~~ 296 (299)
-|.|..=|++-+|||.-|.-.||-|--.-.|-||.|+|.
T Consensus 26 SL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~ 64 (256)
T COG4598 26 SLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIR 64 (256)
T ss_pred eeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEE
Confidence 456889999999999999999999999999999999984
No 39
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=61.65 E-value=45 Score=32.82 Aligned_cols=109 Identities=6% Similarity=-0.007 Sum_probs=67.2
Q ss_pred CCcccHHHHHHHHHHHHhh---C-----CCCceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCC
Q 022297 34 GFCWGVERAVQIAYEARKQ---F-----PEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAF 105 (299)
Q Consensus 34 GFC~GVkRAV~~a~~~~~~---~-----~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAH 105 (299)
.| +|.+.++++.++.+++ . .+.+|...|...-|+.+.+.+++.|..+|-+. ...|..-....=
T Consensus 201 ~~-~~~~~~~~~l~~l~~el~~~~~~~~~~~ril~tG~~~~~~~i~~~iE~~G~~VV~~e--------~c~g~r~~~~~v 271 (377)
T TIGR03190 201 QF-IDKREHNEMLKKVLAALPSRKVERKTGARFMTIGSENDDIAFMAMVESVGATIVIDD--------QCSGTRYFWNAS 271 (377)
T ss_pred cC-CCHHHHHHHHHHHHHHHHhccccCCCCeEEEEECCCCCcHHHHHHHHHCCCEEEEEC--------CCcccccccccC
Confidence 35 7999999887665532 1 12258889999988889999999999998532 111211000000
Q ss_pred CCCHHHHHHHHhcCCeEEeCCC---hh---hHHHHHHHHHHhhCCCeEEEEecC
Q 022297 106 GAAVEEMVTLNNKNVQIVDTTC---PW---VSKVWTSVEKHKKGDYTSIIHGKY 153 (299)
Q Consensus 106 Gvs~~v~~~l~~kgl~VIDATC---P~---V~kv~~~v~~~~~~GY~IVIiGd~ 153 (299)
--+.+.++.+.++=+..+-.+| |. ...+.+.|+++.-+| ||.+..+
T Consensus 272 ~~~~dpl~alA~~yl~~~~C~~~~~p~~~R~~~i~~lv~~~~~DG--VI~~~~k 323 (377)
T TIGR03190 272 KPEDDVIKAIAERYCDRPACPTKDYPVHTRYDHVLGLAKEYNVQG--AIFLQQK 323 (377)
T ss_pred CCCccHHHHHHHHhcCCCCCCCcCCCHHHHHHHHHHHHHHhCCCE--EEEeccc
Confidence 0122456777676676666777 32 455666677777776 6666643
No 40
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=61.22 E-value=1.1e+02 Score=28.50 Aligned_cols=26 Identities=8% Similarity=0.224 Sum_probs=21.2
Q ss_pred CCceEEeeccccCHHHHHHHHhcCcEEecC
Q 022297 55 EEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84 (299)
Q Consensus 55 ~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~ 84 (299)
+++||.+|+ +...+.|++.|+..+++
T Consensus 85 ~~~v~~iG~----~~~~~~l~~~g~~~~~~ 110 (279)
T TIGR01452 85 PKAVYVIGE----EGLRAELDAAGIRLAGD 110 (279)
T ss_pred CCEEEEEcC----HHHHHHHHHCCCEEecC
Confidence 457999997 46788999999998764
No 41
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=60.30 E-value=80 Score=27.09 Aligned_cols=58 Identities=16% Similarity=0.265 Sum_probs=29.8
Q ss_pred CceEEeecc---ccCHHHHHHHHhcCcEEecCCccccccccccCCCE-EEEcCCCCCHHHHHHH
Q 022297 56 EKIWITNEI---IHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDV-VVLPAFGAAVEEMVTL 115 (299)
Q Consensus 56 ~~VytlG~L---IHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~-VIIRAHGvs~~v~~~l 115 (299)
++||++|.= .-=.+...+|...|..+.--.+. ....+.++|. |+|.-.|-++++.+.+
T Consensus 31 ~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~--~~~~~~~~Dv~I~iS~sG~t~~~i~~~ 92 (179)
T TIGR03127 31 KRIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGET--TTPSIKKGDLLIAISGSGETESLVTVA 92 (179)
T ss_pred CEEEEEecCHHHHHHHHHHHHHHhCCCeEEEeCCc--ccCCCCCCCEEEEEeCCCCcHHHHHHH
Confidence 456666641 11223334455556554321111 0123445665 5688889998887654
No 42
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.89 E-value=19 Score=34.29 Aligned_cols=84 Identities=21% Similarity=0.171 Sum_probs=53.5
Q ss_pred eccccCHH----HHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCeEE------eC--CChh
Q 022297 62 NEIIHNPT----VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIV------DT--TCPW 129 (299)
Q Consensus 62 G~LIHN~~----Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~VI------DA--TCP~ 129 (299)
+-+.-|++ +++.|+++|+-|+|+.+ .++-+++.+- ++-|+..+ |. |--.
T Consensus 131 s~~tsn~~aM~~~m~~Lk~r~l~flDs~T----------------~a~S~a~~iA---k~~gVp~~~rdvfLD~e~~~~~ 191 (250)
T COG2861 131 SRFTSNEDAMEKLMEALKERGLYFLDSGT----------------IANSLAGKIA---KEIGVPVIKRDVFLDDEDTEAA 191 (250)
T ss_pred hhhcCcHHHHHHHHHHHHHCCeEEEcccc----------------cccchhhhhH---hhcCCceeeeeeeecCcCCHHH
Confidence 34555665 56788999999998631 1333333332 23355443 33 3345
Q ss_pred hHHHHHHHHHHhhCCCeEEEEecCCCcceeeecc-cC
Q 022297 130 VSKVWTSVEKHKKGDYTSIIHGKYSHEETVATAS-FA 165 (299)
Q Consensus 130 V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g-~~ 165 (299)
|.|=-+.+.+++++.-+.|-||++ ||++...+. |.
T Consensus 192 V~kql~~~~~~Ark~G~ai~IGh~-~~~Tv~vl~~~~ 227 (250)
T COG2861 192 VLKQLDAAEKLARKNGSAIGIGHP-HKNTVAVLQQWL 227 (250)
T ss_pred HHHHHHHHHHHHHhcCceEEecCC-chhHHHHHHHHH
Confidence 666667777888887799999999 888876644 44
No 43
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=58.83 E-value=19 Score=29.54 Aligned_cols=86 Identities=16% Similarity=0.195 Sum_probs=48.6
Q ss_pred eEEeeccccCHHHHHHHHhcCc--EEecCCccccccccccCCCEEEEcCCC-CCHHHHHHHHhcCCeEEeCCChhhHHHH
Q 022297 58 IWITNEIIHNPTVNKRLEEMAV--QNIPVEEGKKQFDVVNKGDVVVLPAFG-AAVEEMVTLNNKNVQIVDTTCPWVSKVW 134 (299)
Q Consensus 58 VytlG~LIHN~~Vv~~L~~~GV--~~v~~~~~~~~~~ei~~g~~VIIRAHG-vs~~v~~~l~~kgl~VIDATCP~V~kv~ 134 (299)
|.++++| ++..++.|++ |+ .+.+..+..+-.+.+++=|.++.+... +++++++.+ .++++|=..+-=+-++
T Consensus 1 ili~~~~--~~~~~~~l~~-~~~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~--~~Lk~I~~~~~G~d~i- 74 (133)
T PF00389_consen 1 ILITDPL--PDEEIERLEE-GFEVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAA--PNLKLISTAGAGVDNI- 74 (133)
T ss_dssp EEESSS---SHHHHHHHHH-TSEEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHH--TT-SEEEESSSSCTTB-
T ss_pred eEEeccC--CHHHHHHHHC-CceEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhcc--ceeEEEEEcccccCcc-
Confidence 4567777 8889999999 64 444422211111223333456666665 889999888 7888886666555433
Q ss_pred HHHHHHhhCCCeEEEE
Q 022297 135 TSVEKHKKGDYTSIIH 150 (299)
Q Consensus 135 ~~v~~~~~~GY~IVIi 150 (299)
-...+.+.|-.|.-.
T Consensus 75 -d~~~a~~~gI~V~n~ 89 (133)
T PF00389_consen 75 -DLEAAKERGIPVTNV 89 (133)
T ss_dssp --HHHHHHTTSEEEE-
T ss_pred -cHHHHhhCeEEEEEe
Confidence 244555666554433
No 44
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=58.79 E-value=44 Score=27.07 Aligned_cols=98 Identities=12% Similarity=0.123 Sum_probs=58.2
Q ss_pred HHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEecCCcccccccc------cc------CCCEEEEcCCCCCHH
Q 022297 43 VQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDV------VN------KGDVVVLPAFGAAVE 110 (299)
Q Consensus 43 V~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~e------i~------~g~~VIIRAHGvs~~ 110 (299)
++.+.+.+++ ...|+.+|+|+....+++.|++..+.++....+...+.+ ++ -+..-++=.||-+-.
T Consensus 16 ~~~~~~~~~~--~d~vi~~GDi~~~~~~~~~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~i~~~H~~~~~ 93 (156)
T PF12850_consen 16 LEAVLEYINE--PDFVIILGDIFDPEEVLELLRDIPVYVVRGNHDNWAFPNENDEEYLLDALRLTIDGFKILLSHGHPYD 93 (156)
T ss_dssp HHHHHHHHTT--ESEEEEES-SCSHHHHHHHHHHHEEEEE--CCHSTHHHSEECTCSSHSEEEEEETTEEEEEESSTSSS
T ss_pred HHHHHHHhcC--CCEEEECCCchhHHHHHHHHhcCCEEEEeCCcccccchhhhhccccccceeeeecCCeEEEECCCCcc
Confidence 4444444432 356999999999999999998888888875433211111 00 022344555654332
Q ss_pred HHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcceee
Q 022297 111 EMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVA 160 (299)
Q Consensus 111 v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~G 160 (299)
+. .........+...++..++.|+...|.+.-
T Consensus 94 -----------------~~-~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~ 125 (156)
T PF12850_consen 94 -----------------VQ-WDPAELREILSRENVDLVLHGHTHRPQVFK 125 (156)
T ss_dssp -----------------ST-TTHHHHHHHHHHTTSSEEEESSSSSEEEEE
T ss_pred -----------------cc-cChhhhhhhhcccCCCEEEcCCcccceEEE
Confidence 11 222233466778999999999999998863
No 45
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=58.52 E-value=51 Score=31.60 Aligned_cols=75 Identities=16% Similarity=0.244 Sum_probs=55.6
Q ss_pred EEEcCCCCCHHHHHHHHhcCCeE-EeCCChhhHHHHHHHHHHhhC-CCeEEEEecCCCcceeeecccCCeEEEEcChhhH
Q 022297 100 VVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKG-DYTSIIHGKYSHEETVATASFAGKYIIVKNMKEA 177 (299)
Q Consensus 100 VIIRAHGvs~~v~~~l~~kgl~V-IDATCP~V~kv~~~v~~~~~~-GY~IVIiGd~~HPEV~Gi~g~~~~~~vv~~~~e~ 177 (299)
+.+.-.|-.....+.+++.++.+ ||||=||-..+-+-+.+.+++ |-.-+-+-.+. ..-- .++.+-|.+.+|+
T Consensus 47 ~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~---~~~~---gd~~~~V~d~~ea 120 (257)
T COG2099 47 VRVGGFLGAEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRLERPP---WAPN---GDNWIEVADIEEA 120 (257)
T ss_pred eeecCcCCHHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCc---cccC---CCceEEecCHHHH
Confidence 77888899999999999999876 999999999998888887765 55555554332 2211 2456778888887
Q ss_pred Hhh
Q 022297 178 EYV 180 (299)
Q Consensus 178 ~~l 180 (299)
-..
T Consensus 121 ~~~ 123 (257)
T COG2099 121 AEA 123 (257)
T ss_pred HHH
Confidence 654
No 46
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=56.18 E-value=24 Score=27.69 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=47.7
Q ss_pred EEEcCCCCCHHHHHHHHhcC--CeEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccCC-eEEEEcChhh
Q 022297 100 VVLPAFGAAVEEMVTLNNKN--VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKE 176 (299)
Q Consensus 100 VIIRAHGvs~~v~~~l~~kg--l~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~~-~~~vv~~~~e 176 (299)
||+-.--++..+.+.|++.+ +.+||.. ++.++++.++|+. ++.||..+|++---.+... +.+++....|
T Consensus 2 vI~G~g~~~~~i~~~L~~~~~~vvvid~d-------~~~~~~~~~~~~~-~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 2 VIIGYGRIGREIAEQLKEGGIDVVVIDRD-------PERVEELREEGVE-VIYGDATDPEVLERAGIEKADAVVILTDDD 73 (116)
T ss_dssp EEES-SHHHHHHHHHHHHTTSEEEEEESS-------HHHHHHHHHTTSE-EEES-TTSHHHHHHTTGGCESEEEEESSSH
T ss_pred EEEcCCHHHHHHHHHHHhCCCEEEEEECC-------cHHHHHHHhcccc-cccccchhhhHHhhcCccccCEEEEccCCH
Confidence 44444456678888898877 4557765 5668888899977 6679999999876555443 3455554445
Q ss_pred HHh
Q 022297 177 AEY 179 (299)
Q Consensus 177 ~~~ 179 (299)
...
T Consensus 74 ~~n 76 (116)
T PF02254_consen 74 EEN 76 (116)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 47
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=54.85 E-value=43 Score=31.66 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=43.9
Q ss_pred ccccchHHHHHHhcCceeeeec----eE-----EEEeCCCCCccc----------------HHHHHHHHHHHHhhC-C-C
Q 022297 3 QEYTSDIIKKLKENGFEYTWGN----VK-----VKLAESYGFCWG----------------VERAVQIAYEARKQF-P-E 55 (299)
Q Consensus 3 ~~~~s~~~~~~~~~~~~~~~~~----M~-----IilA~~~GFC~G----------------VkRAV~~a~~~~~~~-~-~ 55 (299)
++|...+++-|++.++..+|=. ++ +......|+-.| .++-|..+.+++++. + .
T Consensus 97 ~~~t~~iL~iLkk~~vkATFFv~G~~i~~~p~l~k~i~~~GheIGnHT~sH~~l~~ls~~~~~~Ei~~~~~~i~~~~G~~ 176 (268)
T TIGR02873 97 NEYLPEILQILKKHDVKATFFLEGKWVKENSQLAKMIVEQGHEIGNHAYNHPDMATLSKEEIYDQINQTNEIIEATIGVT 176 (268)
T ss_pred cchHHHHHHHHHHCCCCEEEEeehHhhhHCHHHHHHHHHCCCEEEecCCcCCCcccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 4677788888888888877710 00 000111222211 223333344443321 1 1
Q ss_pred CceEEeeccccCHHHHHHHHhcCcEEec
Q 022297 56 EKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (299)
Q Consensus 56 ~~VytlG~LIHN~~Vv~~L~~~GV~~v~ 83 (299)
.+.|..--=-.|+.+++.+++.|..++.
T Consensus 177 p~~fRpP~G~~n~~~~~~l~~~G~~~v~ 204 (268)
T TIGR02873 177 PKWFAPPSGSFNDNVVQIAADLQMGTIM 204 (268)
T ss_pred CCEEECCCCCCCHHHHHHHHHCCCeEEE
Confidence 1344443346799999999999999875
No 48
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=54.09 E-value=47 Score=32.19 Aligned_cols=112 Identities=14% Similarity=0.186 Sum_probs=65.6
Q ss_pred chHHHHHHhcCceeeeeceEEEEe--CCCCCcccHHHHHHHHHHHHhhC-CCCceEEeeccccCHHHHHHHHhcCcEEec
Q 022297 7 SDIIKKLKENGFEYTWGNVKVKLA--ESYGFCWGVERAVQIAYEARKQF-PEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (299)
Q Consensus 7 s~~~~~~~~~~~~~~~~~M~IilA--~~~GFC~GVkRAV~~a~~~~~~~-~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~ 83 (299)
.+.++.|++.|++ +|++- -|.-=+..+.-+.+.+.+++.+. ..-++-...+---+|.-++.+.++=-..
T Consensus 103 ~~~l~~l~~~g~~------~ivvlPLyPqyS~~ttgs~~~~~~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~i~~~-- 174 (316)
T PF00762_consen 103 EDALEELKADGVD------RIVVLPLYPQYSSSTTGSYLDEVERALKKSRPNPKVRFIPSFYDHPAYIEALAERIREA-- 174 (316)
T ss_dssp HHHHHHHHHTT-S------EEEEEESSSS--TTTHHHHHHHHHHHHHHTHSSSEEEEE---TT-HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHcCCC------eEEEEeCCCchhHhhHHHHHHHHHHHHHhcCCCCeEEEeCCccCCHHHHHHHHHHHHHH--
Confidence 3455555554432 33332 34444567777888888877663 2346889999999999999987752222
Q ss_pred CCccccccccc--cCCCEEEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhC
Q 022297 84 VEEGKKQFDVV--NKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKG 143 (299)
Q Consensus 84 ~~~~~~~~~ei--~~g~~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~ 143 (299)
+++. ++++.+||+|||+|....+ ++| .||...++..++..++.
T Consensus 175 -------l~~~~~~~~~~llfSaHglP~~~~~---~~G-------dpY~~~~~~t~~~i~~~ 219 (316)
T PF00762_consen 175 -------LERFPRGEPDHLLFSAHGLPQRYVE---DKG-------DPYPAQCEETARLIAER 219 (316)
T ss_dssp -------HTTS-HCCCEEEEEEEE--BHHHHT---CCT--------SHHHHHHHHHHHHHHH
T ss_pred -------HHhcCCCCCCEEEEccCCCCccccc---cCC-------CChHHHHHHHHHHHHHH
Confidence 2222 2246799999999987662 122 38999888888777665
No 49
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=53.98 E-value=19 Score=27.21 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCeE-EeCCChhhHHHHHHHHHHhhCCCe-EEEEecC
Q 022297 109 VEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYT-SIIHGKY 153 (299)
Q Consensus 109 ~~v~~~l~~kgl~V-IDATCP~V~kv~~~v~~~~~~GY~-IVIiGd~ 153 (299)
-++...|++.|+.+ +|-. -.++-+..+...+.|+. ++|+|+.
T Consensus 21 ~~la~~Lr~~g~~v~~d~~---~~~l~k~i~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 21 EKLYAELQAAGVDVLLDDR---NERPGVKFADADLIGIPYRIVVGKK 64 (94)
T ss_pred HHHHHHHHHCCCEEEEECC---CCCcccchhHHHhcCCCEEEEECCc
Confidence 34456667777777 4543 24666666667777777 5666744
No 50
>PRK12435 ferrochelatase; Provisional
Probab=53.65 E-value=1.2e+02 Score=29.45 Aligned_cols=86 Identities=8% Similarity=0.066 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCe
Q 022297 42 AVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ 121 (299)
Q Consensus 42 AV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~ 121 (299)
..+.+.++++..+..++....+---+|.-++.|.+.=-..++... ..-.+...++|+|||+|....+ +|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~i~~~~~~p~yi~a~a~~I~~~l~~~~-----~~~~~~~~llfSaHslP~~~i~----~G-- 192 (311)
T PRK12435 124 YNKRAKEEAEKLGGPTITSIESWYDEPKFIQYWADQIKETFAQIP-----EEEREKAVLIVSAHSLPEKIIA----AG-- 192 (311)
T ss_pred HHHHHHHHhcccCCCeEEEeCCccCChHHHHHHHHHHHHHHHHcC-----cccccceEEEEecCCCchhHhh----CC--
Confidence 455555555433223567777777788888888764111111000 0001224799999999998775 23
Q ss_pred EEeCCChhhHHHHHHHHHHhhC
Q 022297 122 IVDTTCPWVSKVWTSVEKHKKG 143 (299)
Q Consensus 122 VIDATCP~V~kv~~~v~~~~~~ 143 (299)
.||-..++..++..+++
T Consensus 193 -----DpY~~q~~~t~~~v~~~ 209 (311)
T PRK12435 193 -----DPYPDQLEETADLIAEQ 209 (311)
T ss_pred -----CCHHHHHHHHHHHHHHH
Confidence 59999988888887654
No 51
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=53.33 E-value=85 Score=30.93 Aligned_cols=112 Identities=15% Similarity=0.161 Sum_probs=67.4
Q ss_pred cchHHHHHHhcCceeeeeceEEEE--eCCCCCcccHHHHHHHHHHHHhhCCC-CceEEeeccccCHHHHHHHHhcCcEEe
Q 022297 6 TSDIIKKLKENGFEYTWGNVKVKL--AESYGFCWGVERAVQIAYEARKQFPE-EKIWITNEIIHNPTVNKRLEEMAVQNI 82 (299)
Q Consensus 6 ~s~~~~~~~~~~~~~~~~~M~Iil--A~~~GFC~GVkRAV~~a~~~~~~~~~-~~VytlG~LIHN~~Vv~~L~~~GV~~v 82 (299)
-.++++.|++.|.+ +|++ =-|--=|+-+--+++.+.+++++... .++-+..+---+|--++.+.+. |
T Consensus 104 i~~~v~~l~~~gv~------~iv~~pLyPqyS~sTt~s~~~~~~~al~~~~~~~~i~~I~~~~~~p~yI~a~a~~----I 173 (320)
T COG0276 104 IEEAVEELKKDGVE------RIVVLPLYPQYSSSTTGSYVDELARALKELRGQPKISTIPDYYDEPLYIEALADS----I 173 (320)
T ss_pred HHHHHHHHHHcCCC------eEEEEECCcccccccHHHHHHHHHHHHHhcCCCCceEEecCccCChHHHHHHHHH----H
Confidence 34566666666543 2222 23445577787888877777765322 2566666666677777776553 2
Q ss_pred cCCcccccccccc-CCCEEEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhC
Q 022297 83 PVEEGKKQFDVVN-KGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKG 143 (299)
Q Consensus 83 ~~~~~~~~~~ei~-~g~~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~ 143 (299)
.+ .+.+.+ +++.+|++|||+|....++ | =|+-..++..++...++
T Consensus 174 ~~-----~~~~~~~~~~~llfSaHglP~~~~~~----G-------DpY~~q~~~t~~li~e~ 219 (320)
T COG0276 174 RE-----KLAKHPRDDDVLLFSAHGLPKRYIDE----G-------DPYPQQCQETTRLIAEA 219 (320)
T ss_pred HH-----HHHhcCCCCeEEEEecCCCchhhhhc----C-------CchHHHHHHHHHHHHHH
Confidence 11 122222 4568999999999876544 2 25777777777666553
No 52
>PF15498 Dendrin: Nephrin and CD2AP-binding protein, Dendrin
Probab=52.86 E-value=3.1 Score=42.77 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=27.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCeEEeCCChhh
Q 022297 99 VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWV 130 (299)
Q Consensus 99 ~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V 130 (299)
..-=|||-++..-+.-+..-|+.||||||-..
T Consensus 378 K~trRaHTlPRssrgpa~geGvFVIDATCVVI 409 (657)
T PF15498_consen 378 KETRRAHTLPRSSRGPARGEGVFVIDATCVVI 409 (657)
T ss_pred ccccccccCCcccCCCCCCCceEEEeeeEEEE
Confidence 35679999999888889999999999999643
No 53
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=51.29 E-value=91 Score=28.25 Aligned_cols=26 Identities=4% Similarity=-0.031 Sum_probs=19.3
Q ss_pred eEEeeccccCHHHHHHHHhcCcEEec
Q 022297 58 IWITNEIIHNPTVNKRLEEMAVQNIP 83 (299)
Q Consensus 58 VytlG~LIHN~~Vv~~L~~~GV~~v~ 83 (299)
.|..----.|+.+.+.|++.|..++.
T Consensus 132 ~fR~P~G~~~~~~~~~l~~~Gy~~v~ 157 (224)
T TIGR02884 132 YFRPPRGVFSERTLAYTKELGYYTVF 157 (224)
T ss_pred EEeCCCCCcCHHHHHHHHHcCCcEEe
Confidence 34433345799999999999999874
No 54
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=50.46 E-value=19 Score=33.20 Aligned_cols=33 Identities=15% Similarity=0.116 Sum_probs=29.0
Q ss_pred eEEeCCChhhHHHHHHHHHHhhCCCeEEEEecC
Q 022297 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKY 153 (299)
Q Consensus 121 ~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~ 153 (299)
...|-.|||=+|.|..+.++.+.|++|.++-=+
T Consensus 113 vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P 145 (232)
T PRK10877 113 VFTDITCGYCHKLHEQMKDYNALGITVRYLAFP 145 (232)
T ss_pred EEECCCChHHHHHHHHHHHHhcCCeEEEEEecc
Confidence 358999999999999999999999999887544
No 55
>PRK00035 hemH ferrochelatase; Reviewed
Probab=49.97 E-value=1.5e+02 Score=28.43 Aligned_cols=85 Identities=12% Similarity=0.088 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhhCC-CCceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcC
Q 022297 41 RAVQIAYEARKQFP-EEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKN 119 (299)
Q Consensus 41 RAV~~a~~~~~~~~-~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kg 119 (299)
...+.+.+++++.+ ..++...-++=.+|..++.+.++=-...+. ...-.+++.|+|.+||+|....+ +
T Consensus 138 s~~~~i~~~~~~~~~~~~i~~i~~~~~~p~~i~~l~~~I~~~~~~------~~~~~~~~~llfs~HG~P~~~~~----~- 206 (333)
T PRK00035 138 SYFEDLARALAKLRLQPEIRFIRSYYDHPGYIEALAESIREALAK------HGEDPEPDRLLFSAHGLPQRYID----K- 206 (333)
T ss_pred HHHHHHHHHHHhcCCCCcEEEeCCccCCHHHHHHHHHHHHHHHHh------cCcccCCcEEEEecCCCchHHhh----c-
Confidence 33444455555443 235667777777888877776532111111 00000346799999999987652 2
Q ss_pred CeEEeCCChhhHHHHHHHHHHhh
Q 022297 120 VQIVDTTCPWVSKVWTSVEKHKK 142 (299)
Q Consensus 120 l~VIDATCP~V~kv~~~v~~~~~ 142 (299)
-.|+-..+++.++.+.+
T Consensus 207 ------gd~Y~~~~~~t~~~l~~ 223 (333)
T PRK00035 207 ------GDPYQQQCEETARLLAE 223 (333)
T ss_pred ------CCChHHHHHHHHHHHHH
Confidence 24577777776666554
No 56
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=49.67 E-value=19 Score=35.03 Aligned_cols=88 Identities=20% Similarity=0.281 Sum_probs=51.1
Q ss_pred ccHHHHHHHHHHHHhhCCCCceEEeecc---ccCHHHHHHHHhcCcEEecCCccccccccccCCCE-EEEcCCC-CC---
Q 022297 37 WGVERAVQIAYEARKQFPEEKIWITNEI---IHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDV-VVLPAFG-AA--- 108 (299)
Q Consensus 37 ~GVkRAV~~a~~~~~~~~~~~VytlG~L---IHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~-VIIRAHG-vs--- 108 (299)
-|-+.||+.|+.- -.| +|-+. +-.+.-.+++++-||.++++. .+.+..|.+ |+|..+| .+
T Consensus 32 GGa~mAiefAeAG------HDV-VLaePn~d~~dd~~w~~vedAGV~vv~dD-----~eaa~~~Ei~VLFTPFGk~T~~I 99 (340)
T COG4007 32 GGARMAIEFAEAG------HDV-VLAEPNRDIMDDEHWKRVEDAGVEVVSDD-----AEAAEHGEIHVLFTPFGKATFGI 99 (340)
T ss_pred CchHHHHHHHHcC------CcE-EeecCCccccCHHHHHHHHhcCcEEecCc-----hhhhhcceEEEEecccchhhHHH
Confidence 3778888887541 011 11111 456777899999999999852 334445554 7899999 44
Q ss_pred -HHHHHHHHhcCCeEEeCCChhhHHHHHH
Q 022297 109 -VEEMVTLNNKNVQIVDTTCPWVSKVWTS 136 (299)
Q Consensus 109 -~~v~~~l~~kgl~VIDATCP~V~kv~~~ 136 (299)
+++.+.+.+--+..--+|||=|---+-+
T Consensus 100 arei~~hvpEgAVicnTCT~sp~vLy~~L 128 (340)
T COG4007 100 AREILEHVPEGAVICNTCTVSPVVLYYSL 128 (340)
T ss_pred HHHHHhhCcCCcEecccccCchhHHHHHh
Confidence 4455555443333333455554433333
No 57
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=49.47 E-value=32 Score=30.31 Aligned_cols=86 Identities=10% Similarity=0.100 Sum_probs=49.5
Q ss_pred HHHHHHHHhhCCCCceEEeeccc-cCHHHHHHHHhcCcE--EecCCcccccc-ccccCCCEEEEcCCCCCHHHHHHHHhc
Q 022297 43 VQIAYEARKQFPEEKIWITNEII-HNPTVNKRLEEMAVQ--NIPVEEGKKQF-DVVNKGDVVVLPAFGAAVEEMVTLNNK 118 (299)
Q Consensus 43 V~~a~~~~~~~~~~~VytlG~LI-HN~~Vv~~L~~~GV~--~v~~~~~~~~~-~ei~~g~~VIIRAHGvs~~v~~~l~~k 118 (299)
++++++......+++|.++|-=- =-.-+.+.|.++|.. +++... +++ +.+.+-| |||.|-|.+.-+..+.-+.
T Consensus 32 v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--~~l~~~l~~aD-iVIsat~~~~ii~~~~~~~ 108 (168)
T cd01080 32 LELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--KNLKEHTKQAD-IVIVAVGKPGLVKGDMVKP 108 (168)
T ss_pred HHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--hhHHHHHhhCC-EEEEcCCCCceecHHHccC
Confidence 44444443223456788887611 122267788888854 233211 112 2233344 8899999887444445566
Q ss_pred CCeEEeCCChhhH
Q 022297 119 NVQIVDTTCPWVS 131 (299)
Q Consensus 119 gl~VIDATCP~V~ 131 (299)
+.-+||...|..-
T Consensus 109 ~~viIDla~prdv 121 (168)
T cd01080 109 GAVVIDVGINRVP 121 (168)
T ss_pred CeEEEEccCCCcc
Confidence 8889999988753
No 58
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=48.76 E-value=17 Score=27.28 Aligned_cols=38 Identities=11% Similarity=0.064 Sum_probs=29.6
Q ss_pred EcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCe
Q 022297 102 LPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYT 146 (299)
Q Consensus 102 IRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~ 146 (299)
+..||.||.+++-++.-|+. -...+|...+.|.++||=
T Consensus 19 ~~~~G~~Pt~rEIa~~~g~~-------S~~tv~~~L~~Le~kG~I 56 (65)
T PF01726_consen 19 IEENGYPPTVREIAEALGLK-------STSTVQRHLKALERKGYI 56 (65)
T ss_dssp HHHHSS---HHHHHHHHTSS-------SHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHHHHHhCCC-------ChHHHHHHHHHHHHCcCc
Confidence 45699999999999999984 247899999999999984
No 59
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=48.47 E-value=1e+02 Score=24.26 Aligned_cols=24 Identities=8% Similarity=-0.130 Sum_probs=15.7
Q ss_pred HHHHHHHHhhCCCeEEEEecCCCc
Q 022297 133 VWTSVEKHKKGDYTSIIHGKYSHE 156 (299)
Q Consensus 133 v~~~v~~~~~~GY~IVIiGd~~HP 156 (299)
+...+.-+.+.||.+.++|-..++
T Consensus 17 l~~la~~l~~~G~~v~~~d~~~~~ 40 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDANVPP 40 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEESSB-H
T ss_pred HHHHHHHHHHCCCeEEEECCCCCH
Confidence 344556666779999988755444
No 60
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=46.79 E-value=45 Score=27.32 Aligned_cols=98 Identities=15% Similarity=0.273 Sum_probs=54.7
Q ss_pred cccchHHHHHHhcCceeeeeceEEEEeCCCC-CcccHHHHHHHHHHHHhhCC--CCceEEeeccccCHHHHHHHHhcCcE
Q 022297 4 EYTSDIIKKLKENGFEYTWGNVKVKLAESYG-FCWGVERAVQIAYEARKQFP--EEKIWITNEIIHNPTVNKRLEEMAVQ 80 (299)
Q Consensus 4 ~~~s~~~~~~~~~~~~~~~~~M~IilA~~~G-FC~GVkRAV~~a~~~~~~~~--~~~VytlG~LIHN~~Vv~~L~~~GV~ 80 (299)
.|--.++..|++.|+++ +.-.+.+ .=.|.+ ++..+.+.+ -.-+...-+--|-+.+++++.++|++
T Consensus 14 ~~g~~v~~~l~~~G~~v-------~~Vnp~~~~i~G~~-----~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g~~ 81 (116)
T PF13380_consen 14 KFGYRVLRNLKAAGYEV-------YPVNPKGGEILGIK-----CYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALGVK 81 (116)
T ss_dssp SHHHHHHHHHHHTT-EE-------EEESTTCSEETTEE------BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT-S
T ss_pred ChHHHHHHHHHhCCCEE-------EEECCCceEECcEE-----eeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcCCC
Confidence 34556788888866543 3222222 222322 222233211 12366667777888888888888753
Q ss_pred EecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCeEEeCCChhhH
Q 022297 81 NIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVS 131 (299)
Q Consensus 81 ~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~ 131 (299)
. |++-+....++..+.+++.|++++---|..|.
T Consensus 82 ~------------------v~~~~g~~~~~~~~~a~~~gi~vigp~C~gv~ 114 (116)
T PF13380_consen 82 A------------------VWLQPGAESEELIEAAREAGIRVIGPNCLGVV 114 (116)
T ss_dssp E------------------EEE-TTS--HHHHHHHHHTT-EEEESS-HHHH
T ss_pred E------------------EEEEcchHHHHHHHHHHHcCCEEEeCCcceEE
Confidence 2 44444488999999999999999999998764
No 61
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=46.63 E-value=29 Score=29.07 Aligned_cols=30 Identities=17% Similarity=0.469 Sum_probs=20.2
Q ss_pred ccCCCE-EEEcCCCCCHHHH---HHHHhcCCeEE
Q 022297 94 VNKGDV-VVLPAFGAAVEEM---VTLNNKNVQIV 123 (299)
Q Consensus 94 i~~g~~-VIIRAHGvs~~v~---~~l~~kgl~VI 123 (299)
+.+||+ |+|++.|-+|.+. +.++++|+.+|
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vI 134 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVI 134 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEE
Confidence 567887 5799999999876 45677898887
No 62
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=46.61 E-value=1.3e+02 Score=32.13 Aligned_cols=119 Identities=8% Similarity=0.036 Sum_probs=71.4
Q ss_pred cccchHHHHHHhcCceeeee-ceEEEE--------------eCCCCCcccHHHHHHHHHHHHhh-C-CCCceEEeecccc
Q 022297 4 EYTSDIIKKLKENGFEYTWG-NVKVKL--------------AESYGFCWGVERAVQIAYEARKQ-F-PEEKIWITNEIIH 66 (299)
Q Consensus 4 ~~~s~~~~~~~~~~~~~~~~-~M~Iil--------------A~~~GFC~GVkRAV~~a~~~~~~-~-~~~~VytlG~LIH 66 (299)
+..+++..+|++.|++.-.- .++|.- ....+..|==.+||+.+.+.+.. + .+-++|+.|+=-
T Consensus 13 ~qa~~la~~L~~~G~~vi~~Pli~i~p~~~~~~l~~~l~~L~~yd~iIFTS~nAV~~~~~~l~~~~~~~~~i~AVG~~T- 91 (656)
T PRK06975 13 GQSAALAAQLAAAGLDVLDFPLLDIAPVADDAPLRAALARLSDYALVVFVSPNAVDRALARLDAIWPHALPVAVVGPGS- 91 (656)
T ss_pred hHHHHHHHHHHHcCCCEEEcccEEeeCCCChHHHHHHHHhCCCCCEEEEECHHHHHHHHHHHHhhCccCCeEEEECHHH-
Confidence 34567889999988655443 334431 23334445446666665554432 2 134799999754
Q ss_pred CHHHHHHHHhcCcEEecC-------------C--ccc---ccccc----ccCCCEEEEcCCCCCHHHHHHHHhcCCeEEe
Q 022297 67 NPTVNKRLEEMAVQNIPV-------------E--EGK---KQFDV----VNKGDVVVLPAFGAAVEEMVTLNNKNVQIVD 124 (299)
Q Consensus 67 N~~Vv~~L~~~GV~~v~~-------------~--~~~---~~~~e----i~~g~~VIIRAHGvs~~v~~~l~~kgl~VID 124 (299)
-+.|++.|+...-. . +.. +.+.. ++...++|+|+.|-.+...+.|+++|..|..
T Consensus 92 ----a~aL~~~Gi~~~~~~~~~P~~~~~~p~~~~~se~Ll~~l~~~~~~~~g~rVLi~rG~~gr~~L~~~L~~~Ga~V~~ 167 (656)
T PRK06975 92 ----VAALARHGIAAPAHRVIAPDAPADGGEARYDSEALFAEIDAAFGALAGKRVLIVRGDGGREWLAERLREAGAEVEL 167 (656)
T ss_pred ----HHHHHHcCCCCceeeccccccccCCCCCccchHHHHHhHHHhccCCCCCEEEEEcCCCCcHHHHHHHHHCCCEEEE
Confidence 47899999864311 0 110 11111 2222367899999999999999999988744
Q ss_pred CCC
Q 022297 125 TTC 127 (299)
Q Consensus 125 ATC 127 (299)
..|
T Consensus 168 v~v 170 (656)
T PRK06975 168 VEA 170 (656)
T ss_pred EeE
Confidence 333
No 63
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=46.41 E-value=1.5e+02 Score=28.35 Aligned_cols=123 Identities=18% Similarity=0.226 Sum_probs=75.2
Q ss_pred EEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccCCeEEEEcChhhHHh
Q 022297 100 VVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEY 179 (299)
Q Consensus 100 VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~~~~~vv~~~~e~~~ 179 (299)
=++||. .|..+.++|+++.-..+|+. ++.-.++.++||+=|||- ..+++... |-+.
T Consensus 37 dvfrAf-TS~kIIkkLK~rdgi~~dTP-------~~aL~klk~~gy~eviiQ---------------~lhiIpG~-EyEk 92 (265)
T COG4822 37 DVFRAF-TSRKIIKKLKERDGIDFDTP-------IQALNKLKDQGYEEVIIQ---------------PLHIIPGI-EYEK 92 (265)
T ss_pred HHHHHH-hHHHHHHHHHhhcCcccCCH-------HHHHHHHHHccchheeee---------------eeeecCch-HHHH
Confidence 357887 57889999999988888875 455678899999988764 23455443 3333
Q ss_pred hhhhhccCccCCCCccHHHHHHHHHHhhcCCCCCCCCCceeEEEEccc-cChHHHHHHHHHHHHHhhhccCccchhhhHH
Q 022297 180 VCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTT-MLKGETEEIGKLVEKTMMRKFGVENMQCIRW 258 (299)
Q Consensus 180 l~~~~~~~q~~~tt~~~e~f~~~~~~~~~~~~d~~~~~~kv~Iv~QTT-~~~~~~~~i~~~l~~~~~~~~g~~~~~ei~~ 258 (299)
+. +..+.|...|. ++ .+.|.- .+.++++.++++++..++..
T Consensus 93 lv------------r~V~~~~~dF~--------------~l-kig~PlLy~k~DYe~~v~aik~~~ppl----------- 134 (265)
T COG4822 93 LV------------REVNKYSNDFK--------------RL-KIGRPLLYYKNDYEICVEAIKDQIPPL----------- 134 (265)
T ss_pred HH------------HHHHHHhhhhh--------------ee-ecCCceeechhhHHHHHHHHHHhcCCc-----------
Confidence 31 22233333231 11 111222 23588999988888877743
Q ss_pred hhcCCceEEEEEcCCCCCcchhHhhhh
Q 022297 259 LRKRSILSWLLVGGTRAIPHTFKRLQK 285 (299)
Q Consensus 259 l~~~~vd~~lvvG~~~s~~~~~~~~~~ 285 (299)
..+.+-++.-=|..++||...--|+-
T Consensus 135 -~k~e~~vlmgHGt~h~s~~~YacLd~ 160 (265)
T COG4822 135 -NKDEILVLMGHGTDHHSNAAYACLDH 160 (265)
T ss_pred -CcCeEEEEEecCCCccHHHHHHHHHH
Confidence 14445555555777777766655553
No 64
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=45.57 E-value=1.4e+02 Score=24.33 Aligned_cols=32 Identities=9% Similarity=0.116 Sum_probs=22.1
Q ss_pred HHHHHHHHhhCCCeEEEEecCCCcceeeecccC
Q 022297 133 VWTSVEKHKKGDYTSIIHGKYSHEETVATASFA 165 (299)
Q Consensus 133 v~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~ 165 (299)
.++..+.+.+.||.|+-+ ++.+-|+.|+..|.
T Consensus 16 g~~v~~~l~~~G~~v~~V-np~~~~i~G~~~y~ 47 (116)
T PF13380_consen 16 GYRVLRNLKAAGYEVYPV-NPKGGEILGIKCYP 47 (116)
T ss_dssp HHHHHHHHHHTT-EEEEE-STTCSEETTEE-BS
T ss_pred HHHHHHHHHhCCCEEEEE-CCCceEECcEEeec
Confidence 456667777799999988 55567888876665
No 65
>PLN02449 ferrochelatase
Probab=44.79 E-value=1.4e+02 Score=31.03 Aligned_cols=69 Identities=10% Similarity=0.128 Sum_probs=39.9
Q ss_pred ceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHH
Q 022297 57 KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTS 136 (299)
Q Consensus 57 ~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~ 136 (299)
++.+.-.---+|.-++.+.+.=-..++. ... +++..|+|+|||+|....++. | .||-..+...
T Consensus 243 ~~~~I~~~~~~p~yI~A~a~~I~~~l~~------~~~-~~~~~LlFSAHGlP~~~v~~~---G-------DpY~~q~~~t 305 (485)
T PLN02449 243 QHTVIPSWYQREGYVKAMADLIKKELAK------FSD-PEEVHIFFSAHGVPVSYVEEA---G-------DPYKAQMEEC 305 (485)
T ss_pred eeEEeccccCChHHHHHHHHHHHHHHHh------ccC-cCCcEEEEecCCChhhhhhhc---C-------CChHHHHHHH
Confidence 3555555566777777665532211111 011 234679999999998876422 3 4777776666
Q ss_pred HHHHhh
Q 022297 137 VEKHKK 142 (299)
Q Consensus 137 v~~~~~ 142 (299)
++...+
T Consensus 306 a~lI~~ 311 (485)
T PLN02449 306 VDLIME 311 (485)
T ss_pred HHHHHH
Confidence 555443
No 66
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=43.81 E-value=52 Score=36.70 Aligned_cols=102 Identities=18% Similarity=0.169 Sum_probs=76.6
Q ss_pred ceE-EeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHH
Q 022297 57 KIW-ITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWT 135 (299)
Q Consensus 57 ~Vy-tlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~ 135 (299)
-|| =||=|--|++...+..+.|+.||.... + .++..|=--.-+..+.+.|+.||=+|-|.+.-+..
T Consensus 83 aIhPGYGfLSEn~efA~~c~eaGI~FIGP~~-----e--------~ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee 149 (1149)
T COG1038 83 AIHPGYGFLSENPEFARACAEAGITFIGPKP-----E--------VLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEE 149 (1149)
T ss_pred eecCCcccccCCHHHHHHHHHcCCEEeCCCH-----H--------HHHHhccHHHHHHHHHHcCCCccCCCCCCcccHHH
Confidence 355 589999999999999999999996321 1 13333434466788899999999999999998887
Q ss_pred HHHHHhhCCCeEEEEecCCCcceeeecccCC-eEEEEcChhhHHhh
Q 022297 136 SVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYV 180 (299)
Q Consensus 136 ~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~~-~~~vv~~~~e~~~l 180 (299)
..+-..+.||-++| ++..|-.+ .--+|.+.+|+...
T Consensus 150 ~~~fa~~~gyPvmi---------KA~~GGGGRGMR~vr~~~~l~~~ 186 (1149)
T COG1038 150 ALEFAEEYGYPVMI---------KAAAGGGGRGMRVVRSEADLAEA 186 (1149)
T ss_pred HHHHHHhcCCcEEE---------EEccCCCccceeeecCHHHHHHH
Confidence 77767778999986 44444444 35788888887654
No 67
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=43.79 E-value=1.8e+02 Score=24.93 Aligned_cols=87 Identities=17% Similarity=0.186 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHH----------hcCcEEecCC---ccc------cc--------
Q 022297 38 GVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLE----------EMAVQNIPVE---EGK------KQ-------- 90 (299)
Q Consensus 38 GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~----------~~GV~~v~~~---~~~------~~-------- 90 (299)
.+++|+++..+++.+ .++||++|.= ++-.+-..|. +.|+.+.--. ... ..
T Consensus 18 ~i~~a~~~i~~~i~~--~~~I~i~G~G-~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (177)
T cd05006 18 AIEQAAQLLAEALLN--GGKILICGNG-GSAADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGYEEVFSRQ 94 (177)
T ss_pred HHHHHHHHHHHHHHC--CCEEEEEeCc-HHHHHHHHHHHHHhchhccCCCCCceEeccCCHHHHHHHhccCCHHHHHHHH
Confidence 356677776666553 3578888876 5555544332 1254443211 000 00
Q ss_pred -cccccCCCE-EEEcCCCCCHHHHHHH---HhcCCeEEeCCC
Q 022297 91 -FDVVNKGDV-VVLPAFGAAVEEMVTL---NNKNVQIVDTTC 127 (299)
Q Consensus 91 -~~ei~~g~~-VIIRAHGvs~~v~~~l---~~kgl~VIDATC 127 (299)
...+.++|. |+|+.-|-++++.+.+ +++|.++|=-|+
T Consensus 95 ~~~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~ 136 (177)
T cd05006 95 VEALGQPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTG 136 (177)
T ss_pred HHHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 012456776 4678889998876544 344444443333
No 68
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=43.60 E-value=2.8e+02 Score=26.02 Aligned_cols=127 Identities=13% Similarity=0.099 Sum_probs=73.4
Q ss_pred cccchHHHHHHhcCcee-eeeceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEe
Q 022297 4 EYTSDIIKKLKENGFEY-TWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNI 82 (299)
Q Consensus 4 ~~~s~~~~~~~~~~~~~-~~~~M~IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v 82 (299)
+-+-++++.|-+.|++. .+|. -....+...+++...+. .....+ ++.+..|+.=+++..+.|+..+
T Consensus 22 ~~k~~i~~~L~~~Gv~~IEvG~--------P~~~~~~~~~~~~l~~~---~~~~~v--~~~~r~~~~di~~a~~~g~~~i 88 (262)
T cd07948 22 EDKIEIAKALDAFGVDYIELTS--------PAASPQSRADCEAIAKL---GLKAKI--LTHIRCHMDDARIAVETGVDGV 88 (262)
T ss_pred HHHHHHHHHHHHcCCCEEEEEC--------CCCCHHHHHHHHHHHhC---CCCCcE--EEEecCCHHHHHHHHHcCcCEE
Confidence 34567888888888532 3331 23345555555554321 111234 5557899998898888888765
Q ss_pred cCCccccccccccCCCEEEEcCCCCCHHH--------HHHHHhcCCeE----EeCC-ChhhHHHHHHHHHHhhCCCeEEE
Q 022297 83 PVEEGKKQFDVVNKGDVVVLPAFGAAVEE--------MVTLNNKNVQI----VDTT-CPWVSKVWTSVEKHKKGDYTSII 149 (299)
Q Consensus 83 ~~~~~~~~~~ei~~g~~VIIRAHGvs~~v--------~~~l~~kgl~V----IDAT-CP~V~kv~~~v~~~~~~GY~IVI 149 (299)
.=. ++-.+.-.-..+|-+++. .+.++++|+.| .|++ || ...+.+.++++.+-|-..+.
T Consensus 89 ~i~--------~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~-~~~l~~~~~~~~~~g~~~i~ 159 (262)
T cd07948 89 DLV--------FGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSD-LVDLLRVYRAVDKLGVNRVG 159 (262)
T ss_pred EEE--------EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCC-HHHHHHHHHHHHHcCCCEEE
Confidence 310 000000111234544433 35667888876 5666 88 55677888888877776666
Q ss_pred Eec
Q 022297 150 HGK 152 (299)
Q Consensus 150 iGd 152 (299)
+.|
T Consensus 160 l~D 162 (262)
T cd07948 160 IAD 162 (262)
T ss_pred ECC
Confidence 655
No 69
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=43.47 E-value=1.1e+02 Score=26.54 Aligned_cols=115 Identities=15% Similarity=0.118 Sum_probs=64.3
Q ss_pred cchHHHHHHhcCceeeeece-EEE-------------EeCCCCCcccHHHHHHHHHHHHhh-----CCCCceEEeecccc
Q 022297 6 TSDIIKKLKENGFEYTWGNV-KVK-------------LAESYGFCWGVERAVQIAYEARKQ-----FPEEKIWITNEIIH 66 (299)
Q Consensus 6 ~s~~~~~~~~~~~~~~~~~M-~Ii-------------lA~~~GFC~GVkRAV~~a~~~~~~-----~~~~~VytlG~LIH 66 (299)
.+.+.+.|++.|+...+-++ ++. +....+.-|==.+|++...+.+.+ ..+.++|+.|+=
T Consensus 10 ~~~l~~~L~~~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iiftS~~av~~~~~~~~~~~~~~~~~~~~~avG~~-- 87 (239)
T cd06578 10 ADELAALLEALGAEVLELPLIEIEPLDDAELDAALADLDEYDWLIFTSPNAVEAFFEALEELGLRALAGLKIAAVGPK-- 87 (239)
T ss_pred hHHHHHHHHHcCCcEEEeeeEEEecCChHHHHHHHHhcCCCCEEEEECHHHHHHHHHHHHhhCCccccCCEEEEECHH--
Confidence 46788899999866655322 221 011222233223455554444432 124578888764
Q ss_pred CHHHHHHHHhcCcEEecCCcc---c---ccccc--ccCCCEEEEcCCCCCHHHHHHHHhcCCeEEeC
Q 022297 67 NPTVNKRLEEMAVQNIPVEEG---K---KQFDV--VNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDT 125 (299)
Q Consensus 67 N~~Vv~~L~~~GV~~v~~~~~---~---~~~~e--i~~g~~VIIRAHGvs~~v~~~l~~kgl~VIDA 125 (299)
.-+.|++.|+...-..+. . +.+.. .....++++|+-+..+...+.|++.|..++-.
T Consensus 88 ---Ta~~l~~~g~~~~~~~~~~~~~~L~~~i~~~~~~~~~il~~~g~~~~~~l~~~L~~~g~~v~~~ 151 (239)
T cd06578 88 ---TAEALREAGLTADFVPEEGDSEGLLELLELQDGKGKRILRPRGGRAREDLAEALRERGAEVDEV 151 (239)
T ss_pred ---HHHHHHHcCCCceeCCCccCHHHHHHHHHhcCCCCCEEEEEcCcchhHHHHHHHHHCCCEEEEE
Confidence 558899999876542111 0 01111 22233456666666789999999999887644
No 70
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=43.28 E-value=31 Score=27.98 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=36.3
Q ss_pred ccccchHHHHHHhcCceeeeeceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEe
Q 022297 3 QEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWIT 61 (299)
Q Consensus 3 ~~~~s~~~~~~~~~~~~~~~~~M~IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~Vytl 61 (299)
|+|-.++++.|++.|..+..++|.=.+-...-=||. +|+.+.+++.+.+-.+|++.
T Consensus 18 s~yVa~~i~~l~~sGl~y~~~pm~T~IEGe~dev~~---~i~~~~e~~~~~G~~Rv~t~ 73 (97)
T TIGR00106 18 SSYVAAAIEVLKESGLKYELHPMGTLIEGDLDELFE---AIKAIHEAVLEKGSDRVYTS 73 (97)
T ss_pred HHHHHHHHHHHHHcCCCeEecCCccEEecCHHHHHH---HHHHHHHHHHHcCCCeEEEE
Confidence 678899999999999999999996555434333333 44444444433222356654
No 71
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=42.72 E-value=76 Score=28.45 Aligned_cols=32 Identities=19% Similarity=0.147 Sum_probs=25.3
Q ss_pred EEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEEecC
Q 022297 100 VVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKY 153 (299)
Q Consensus 100 VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~ 153 (299)
=|++||=.|...++. +++..++|++|||-|--
T Consensus 35 ~VvSAHRTPe~m~~y----------------------a~~a~~~g~~viIAgAG 66 (162)
T COG0041 35 RVVSAHRTPEKMFEY----------------------AEEAEERGVKVIIAGAG 66 (162)
T ss_pred EEEeccCCHHHHHHH----------------------HHHHHHCCCeEEEecCc
Confidence 579999998766654 46778999999998843
No 72
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=42.68 E-value=93 Score=27.12 Aligned_cols=51 Identities=6% Similarity=-0.134 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHhcCCe-EEeCCChhhHHHHHHHHHHhhCCCeEEEEecCC
Q 022297 104 AFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYS 154 (299)
Q Consensus 104 AHGvs~~v~~~l~~kgl~-VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~ 154 (299)
+-.-.+.+...+++.|+. +.++..|....+.+..+++.-+.-.+++|||..
T Consensus 71 T~~~~~~v~~~l~~lgl~~~f~g~~~k~~~l~~~~~~~gl~~~ev~~VGDs~ 122 (183)
T PRK09484 71 TGRKSKLVEDRMTTLGITHLYQGQSNKLIAFSDLLEKLAIAPEQVAYIGDDL 122 (183)
T ss_pred eCCCcHHHHHHHHHcCCceeecCCCcHHHHHHHHHHHhCCCHHHEEEECCCH
Confidence 333455666777777775 566667777777777777766667899999875
No 73
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=42.57 E-value=28 Score=30.09 Aligned_cols=65 Identities=15% Similarity=0.247 Sum_probs=49.6
Q ss_pred cccCCCEEEEcCCCCCHHHHHHHHhc-CCeEEeCCChhhHHHHHHHHHHhhC-CCeEEEEecCCCcceeeeccc
Q 022297 93 VVNKGDVVVLPAFGAAVEEMVTLNNK-NVQIVDTTCPWVSKVWTSVEKHKKG-DYTSIIHGKYSHEETVATASF 164 (299)
Q Consensus 93 ei~~g~~VIIRAHGvs~~v~~~l~~k-gl~VIDATCP~V~kv~~~v~~~~~~-GY~IVIiGd~~HPEV~Gi~g~ 164 (299)
-+++|++|+|-+-=....+.+.|.++ ++.|| ++--..+..+.+. +.+|++.|=.-+|+-.++.|.
T Consensus 16 ~I~~~~~Ifld~GtT~~~la~~L~~~~~ltVv-------Tnsl~ia~~l~~~~~~~vi~~GG~~~~~~~~~~G~ 82 (161)
T PF00455_consen 16 LIEDGDTIFLDSGTTTLELAKYLPDKKNLTVV-------TNSLPIANELSENPNIEVILLGGEVNPKSLSFVGP 82 (161)
T ss_pred hCCCCCEEEEECchHHHHHHHHhhcCCceEEE-------ECCHHHHHHHHhcCceEEEEeCCEEEcCCCcEECc
Confidence 34678999999888888999999988 88888 3334445555554 899999997777777777663
No 74
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=42.55 E-value=1.4e+02 Score=31.03 Aligned_cols=29 Identities=17% Similarity=0.027 Sum_probs=25.3
Q ss_pred EEEEccccChHHHHHHHHHHHHHhhhccC
Q 022297 221 GIANQTTMLKGETEEIGKLVEKTMMRKFG 249 (299)
Q Consensus 221 ~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g 249 (299)
.++.-+|.+..+++++.+.+++....+.+
T Consensus 102 iiID~sT~~~~~t~~~~~~l~~~Gi~fld 130 (493)
T PLN02350 102 CIIDGGNEWYENTERRIKEAAEKGLLYLG 130 (493)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCCeEEe
Confidence 58899999999999999999988777655
No 75
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=42.54 E-value=51 Score=24.57 Aligned_cols=42 Identities=10% Similarity=0.159 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCeE-EeCCChhhHHHHHHHHHHhhCCCe-EEEEecCC
Q 022297 110 EEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYT-SIIHGKYS 154 (299)
Q Consensus 110 ~v~~~l~~kgl~V-IDATCP~V~kv~~~v~~~~~~GY~-IVIiGd~~ 154 (299)
++.+.|++.|+.+ +|-.. .++.+..++..+.||. ++++|+..
T Consensus 22 ~~~~~Lr~~g~~v~~~~~~---~~~~k~~~~a~~~g~~~~iiig~~e 65 (94)
T cd00738 22 KLLNALLANGIRVLYDDRE---RKIGKKFREADLRGVPFAVVVGEDE 65 (94)
T ss_pred HHHHHHHHCCCEEEecCCC---cCHhHHHHHHHhCCCCEEEEECCCh
Confidence 3567788888877 44432 5777777888888965 78888643
No 76
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=42.13 E-value=37 Score=28.77 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=27.5
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhC
Q 022297 97 GDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKG 143 (299)
Q Consensus 97 g~~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~ 143 (299)
.+.+||.|||+|....+ + --|+...+...++...++
T Consensus 18 ~~~llfsaHgiP~~~~~----~-------gd~Y~~~~~~~~~~v~~~ 53 (135)
T cd00419 18 KDRLLFSAHGLPVRDIK----K-------GDPYPDQCEETARLVAER 53 (135)
T ss_pred CCEEEEEcCCCHHHHhh----C-------CCCHHHHHHHHHHHHHHH
Confidence 46799999999988765 2 247888888887777654
No 77
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.83 E-value=44 Score=29.60 Aligned_cols=33 Identities=18% Similarity=0.445 Sum_probs=24.6
Q ss_pred EEeC-CChhhHHHHHHHHHHhhCCCeEEEEecCCCcc
Q 022297 122 IVDT-TCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEE 157 (299)
Q Consensus 122 VIDA-TCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPE 157 (299)
.||| .||...-+.+.|.++ |..++++-+.+|+-
T Consensus 5 ~VDADACPVk~~i~r~A~r~---~~~v~~Van~~~~~ 38 (150)
T COG1671 5 WVDADACPVKDEIYRVAERM---GLKVTFVANFPHRV 38 (150)
T ss_pred EEeCCCCchHHHHHHHHHHh---CCeEEEEeCCCccC
Confidence 5787 699555555555444 99999999999984
No 78
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=41.46 E-value=3.2e+02 Score=27.33 Aligned_cols=57 Identities=14% Similarity=0.041 Sum_probs=41.8
Q ss_pred ceeEEEEccc-----cChHHHHHHHHHHHHHhhhcc--CccchhhhH-------HhhcCCceEEEEEcCCCC
Q 022297 218 VKVGIANQTT-----MLKGETEEIGKLVEKTMMRKF--GVENMQCIR-------WLRKRSILSWLLVGGTRA 275 (299)
Q Consensus 218 ~kv~Iv~QTT-----~~~~~~~~i~~~l~~~~~~~~--g~~~~~ei~-------~l~~~~vd~~lvvG~~~s 275 (299)
..+.+.||.| .+.+++++|.+.+++.....+ |+...|-.. .. +.-+|++-+-|.|+=
T Consensus 132 ~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~-~~~~D~v~~~~tK~g 202 (342)
T COG2008 132 PLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTI-KSYVDSVSFCLTKGG 202 (342)
T ss_pred ceEEEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHH-HhhCCEEEEecccCC
Confidence 4778888888 679999999999998876643 455545442 22 677999988877763
No 79
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=41.06 E-value=87 Score=29.52 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=28.6
Q ss_pred ccccCCCE-EEEcCCC---CCHHHHHHHHhcCCeEEeCCCh
Q 022297 92 DVVNKGDV-VVLPAFG---AAVEEMVTLNNKNVQIVDTTCP 128 (299)
Q Consensus 92 ~ei~~g~~-VIIRAHG---vs~~v~~~l~~kgl~VIDATCP 128 (299)
.++.+||+ +||+--| +|-++-+.++++|..||=-|--
T Consensus 100 ~~i~~~DVliviSnSGrNpvpie~A~~~rekGa~vI~vTSl 140 (243)
T COG4821 100 LQIRPNDVLIVISNSGRNPVPIEVAEYAREKGAKVIAVTSL 140 (243)
T ss_pred hcCCCCCEEEEEeCCCCCCcchHHHHHHHhcCCeEEEEehh
Confidence 35667887 4677777 5668889999999999987753
No 80
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=40.89 E-value=2.1e+02 Score=29.29 Aligned_cols=104 Identities=13% Similarity=0.006 Sum_probs=59.9
Q ss_pred HHHHHHHhhCCCeEEEEecCCCcceeeeccc-C--CeEEEEcChhhHHh-h--hhhhccCccCCCCccHHHHHHHHHHhh
Q 022297 134 WTSVEKHKKGDYTSIIHGKYSHEETVATASF-A--GKYIIVKNMKEAEY-V--CDYILGGELNGSSSTKEAFLEKFKKAV 207 (299)
Q Consensus 134 ~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~-~--~~~~vv~~~~e~~~-l--~~~~~~~q~~~tt~~~e~f~~~~~~~~ 207 (299)
...|+++.+.||.|.+. |++..-+..+... . ..+....+++|+-. + ++.++.. -.+....++-++.+...+
T Consensus 3 ~~mA~nL~~~G~~V~v~-nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~m--v~~g~~v~~Vi~~l~~~l 79 (459)
T PRK09287 3 KNLALNIASHGYTVAVY-NRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLM--VKAGAPVDAVIEQLLPLL 79 (459)
T ss_pred HHHHHHHHhCCCeEEEE-CCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEE--CCCchHHHHHHHHHHhcC
Confidence 35678888888888776 6665545444331 1 12455666766543 2 2211111 012233344444443322
Q ss_pred cCCCCCCCCCceeEEEEccccChHHHHHHHHHHHHHhhhccC
Q 022297 208 SKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFG 249 (299)
Q Consensus 208 ~~~~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g 249 (299)
. + .. .|+.-+|-...++.+..+.+++....+.+
T Consensus 80 ~----~----Gd-iiID~gn~~~~~t~~~~~~l~~~Gi~fvd 112 (459)
T PRK09287 80 E----K----GD-IIIDGGNSNYKDTIRREKELAEKGIHFIG 112 (459)
T ss_pred C----C----CC-EEEECCCCCHHHHHHHHHHHHhcCCeEEe
Confidence 2 1 23 58888999999999999999888766544
No 81
>COG1494 GlpX Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins [Carbohydrate transport and metabolism]
Probab=40.44 E-value=19 Score=35.32 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=32.9
Q ss_pred CHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHH
Q 022297 67 NPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEM 112 (299)
Q Consensus 67 N~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~ 112 (299)
+++.+.+++++|+. ++. .-.++++-.|+.|||.|-||++-.+
T Consensus 248 ~~~e~~R~~~mGid-~~~---vl~ledlv~gd~viFaATGvT~G~l 289 (332)
T COG1494 248 GEEERARCKAMGID-VNK---VLSLEDLVRGDNVIFAATGVTDGDL 289 (332)
T ss_pred cHHHHHHHHHhCCC-hhh---eeeHHHhcCCCceEEEeccCcCcch
Confidence 78899999999992 222 2356778888889999999998654
No 82
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=40.37 E-value=3.7e+02 Score=26.46 Aligned_cols=104 Identities=13% Similarity=0.204 Sum_probs=55.1
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHH----hh--CCCCceEEeeccc--cCHHHHHHHHhcCcEEecCCccccccccccC
Q 022297 25 VKVKLAESYGFCWGVERAVQIAYEAR----KQ--FPEEKIWITNEII--HNPTVNKRLEEMAVQNIPVEEGKKQFDVVNK 96 (299)
Q Consensus 25 M~IilA~~~GFC~GVkRAV~~a~~~~----~~--~~~~~VytlG~LI--HN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~ 96 (299)
..|+.+...||-.....+.+.+.+++ .+ .+...|-.+|++- -..++..-|++.|+.++.-..+ .++++++.
T Consensus 119 ~pvi~v~t~gf~g~~~~G~~~~~~alv~~~~~~~~~~~~VnliG~~~~~d~~el~~lL~~~Gi~v~~~~~d-~~~~~~~~ 197 (396)
T cd01979 119 VPILVASASGLDYTFTQGEDTVLAALVPRCPEKPSPERSLVLVGSLPDIVEDQLRRELEQLGIPVVGFLPP-RRYTDLPV 197 (396)
T ss_pred CcEEEeeCCCccccHHHHHHHHHHHHhhhcccccCCCCceEEEEeCCcchHHHHHHHHHHcCCeEEEEeCC-CChHHhhc
Confidence 46888888898643444444443322 21 1224588888631 1134556678899998632111 13445543
Q ss_pred --CCEEEEcCCCCCHHHHHHHHh-cCCeEEeCCChh
Q 022297 97 --GDVVVLPAFGAAVEEMVTLNN-KNVQIVDTTCPW 129 (299)
Q Consensus 97 --g~~VIIRAHGvs~~v~~~l~~-kgl~VIDATCP~ 129 (299)
.+.+++-.|......-+.|++ .|+..+...-|+
T Consensus 198 ~~~a~~~~~~~~~~~~~A~~Le~r~giP~~~~~~P~ 233 (396)
T cd01979 198 IGPGTYVLGIQPFLSRTATTLMRRRKCKLLSAPFPI 233 (396)
T ss_pred cCcceEEEEeChhHHHHHHHHHHhcCCCcccCCcCc
Confidence 234555444443455666655 466566554444
No 83
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=40.37 E-value=2.1e+02 Score=29.12 Aligned_cols=68 Identities=12% Similarity=0.132 Sum_probs=40.4
Q ss_pred cchHHHHHHhcCceeeeeceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEec
Q 022297 6 TSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (299)
Q Consensus 6 ~s~~~~~~~~~~~~~~~~~M~IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~ 83 (299)
..++.++|++..-++ .+++.+.....||..+.+|.+.. ...++.=..-+. +.-|+|+..+++ ++.-|.
T Consensus 104 ~~~~~~~i~~~~~~~---~i~~fv~~~Cp~Cp~~v~~~~~~---a~~~~~i~~~~i-d~~~~~~~~~~~---~v~~VP 171 (517)
T PRK15317 104 DQEVIEQIKALDGDF---HFETYVSLSCHNCPDVVQALNLM---AVLNPNITHTMI-DGALFQDEVEAR---NIMAVP 171 (517)
T ss_pred CHHHHHHHHhcCCCe---EEEEEEcCCCCCcHHHHHHHHHH---HHhCCCceEEEE-EchhCHhHHHhc---CCcccC
Confidence 344555565544333 36789999999999777776543 333332222233 667888777655 555443
No 84
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=40.31 E-value=27 Score=24.80 Aligned_cols=26 Identities=12% Similarity=0.118 Sum_probs=20.7
Q ss_pred HHHHHHhcCcEEecCCccccccccccCCCEEEEcCC
Q 022297 70 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAF 105 (299)
Q Consensus 70 Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAH 105 (299)
.++.|+++|+.++.. ++|..+|.|+|
T Consensus 20 Q~~~L~~~Gi~~~~~----------~~G~p~V~r~~ 45 (47)
T PF13986_consen 20 QIRWLRRNGIPFVVR----------ADGRPIVTRSH 45 (47)
T ss_pred HHHHHHHCCCeeEEC----------CCCCEEeeHHH
Confidence 458899999999865 45777888876
No 85
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=39.93 E-value=20 Score=35.45 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=22.5
Q ss_pred ceEEeeccccCHHHHHHHHhcCcE
Q 022297 57 KIWITNEIIHNPTVNKRLEEMAVQ 80 (299)
Q Consensus 57 ~VytlG~LIHN~~Vv~~L~~~GV~ 80 (299)
.-|+.||-+||..|++.|++.||.
T Consensus 376 eyYmCGPp~mNasvikmL~dlGVE 399 (410)
T COG2871 376 EYYMCGPPLMNASVIKMLKDLGVE 399 (410)
T ss_pred eEEeeCcchhhHHHHHHHHhcCcc
Confidence 589999999999999999999985
No 86
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=38.91 E-value=2.5e+02 Score=24.68 Aligned_cols=24 Identities=4% Similarity=0.011 Sum_probs=13.1
Q ss_pred eeEEEEccccChHHHHHHHHHHHH
Q 022297 219 KVGIANQTTMLKGETEEIGKLVEK 242 (299)
Q Consensus 219 kv~Iv~QTT~~~~~~~~i~~~l~~ 242 (299)
-+++++-----...+.++++.|++
T Consensus 66 vIgvSsl~g~h~~l~~~lve~lre 89 (143)
T COG2185 66 VIGVSSLDGGHLTLVPGLVEALRE 89 (143)
T ss_pred EEEEEeccchHHHHHHHHHHHHHH
Confidence 566666544445555666555543
No 87
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=38.73 E-value=2e+02 Score=26.74 Aligned_cols=136 Identities=11% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCeEEEEecCCCcceeeecccCCeEEEEcChhhHHhhhhhhccCccCCCCccHHHHH---HHHHHhhcCC
Q 022297 134 WTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFL---EKFKKAVSKG 210 (299)
Q Consensus 134 ~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~~~~~vv~~~~e~~~l~~~~~~~q~~~tt~~~e~f~---~~~~~~~~~~ 210 (299)
...++.+.+.|++|.+. +++...+..+.... +.+..++.++-.-++.++.. -.++.+.++.+ +.+...+.++
T Consensus 9 ~~mA~~L~~~G~~V~v~-dr~~~~~~~l~~~g--~~~~~s~~~~~~~advVil~--vp~~~~~~~v~~g~~~l~~~~~~g 83 (288)
T TIGR01692 9 GPMAANLLKAGHPVRVF-DLFPDAVEEAVAAG--AQAAASPAEAAEGADRVITM--LPAGQHVISVYSGDEGILPKVAKG 83 (288)
T ss_pred HHHHHHHHhCCCeEEEE-eCCHHHHHHHHHcC--CeecCCHHHHHhcCCEEEEe--CCChHHHHHHHcCcchHhhcCCCC
Q ss_pred CCCCCCCceeEEEEccccChHHHHHHHHHHHHHhhhccCccchhhhHHhhcCCceEEEEEcCCCCCcchhHhhhhccc
Q 022297 211 FDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIRWLRKRSILSWLLVGGTRAIPHTFKRLQKTVE 288 (299)
Q Consensus 211 ~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~~~ei~~l~~~~vd~~lvvG~~~s~~~~~~~~~~~~~ 288 (299)
- .+++-||.+.+..+++.+.+++....+...-..--.....++. +.+++|| .+..|+|++...+
T Consensus 84 ~---------~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~--l~~~~gg---~~~~~~~~~~~l~ 147 (288)
T TIGR01692 84 S---------LLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGT--LTFMVGG---VAEEFAAAEPVLG 147 (288)
T ss_pred C---------EEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCc--EEEEECC---CHHHHHHHHHHHH
No 88
>PRK02287 hypothetical protein; Provisional
Probab=38.34 E-value=73 Score=28.72 Aligned_cols=58 Identities=14% Similarity=0.370 Sum_probs=40.6
Q ss_pred HHHHHhcCcEEecCCccccccccccCCCEEEEcCCC---CCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHh
Q 022297 71 NKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG---AAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHK 141 (299)
Q Consensus 71 v~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHG---vs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~ 141 (299)
..+|.+.|+...-.. ...++.| .||+..+| +||+..+..++.|+.|||++ |+.+.+..
T Consensus 19 g~KL~r~g~~~~~~~-----~~~~~~g-~IvL~P~a~~~lSp~D~~~~~~~Gi~vlDcS-------W~~~~~~~ 79 (171)
T PRK02287 19 ARKLVRFGLARLVRS-----IRKIPRG-SIVLNPFAEKALSPADRDIVEKRGIVALDCS-------WNEAERVF 79 (171)
T ss_pred HHHHHhCCceeEecc-----cccCCCC-eEEECCCCCcCcCHHHHHhhhhCCEEEEECC-------HHHHhhhh
Confidence 367888887654321 1233444 48888886 67999999999999999998 55555543
No 89
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=38.27 E-value=61 Score=29.44 Aligned_cols=34 Identities=21% Similarity=0.476 Sum_probs=24.3
Q ss_pred cccchHHHHHHh-cCceeeeeceEEEEeCCCCC-cccHHHH
Q 022297 4 EYTSDIIKKLKE-NGFEYTWGNVKVKLAESYGF-CWGVERA 42 (299)
Q Consensus 4 ~~~s~~~~~~~~-~~~~~~~~~M~IilA~~~GF-C~GVkRA 42 (299)
+.++.|++.-+. .|+++.||.. .+.|| |.|.-+.
T Consensus 65 ~~~~~il~~a~~~~G~pY~~GG~-----s~~G~DCSGfv~~ 100 (190)
T PRK10838 65 DVKSRIMDQYADWKGVRYRLGGS-----TKKGIDCSAFVQR 100 (190)
T ss_pred hHHHHHHHHHHHHCCCCccCCCC-----CCCCeEcHHHHHH
Confidence 446666665444 4899999984 36799 9998664
No 90
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=38.26 E-value=66 Score=30.92 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=37.9
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEE
Q 022297 97 GDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIH 150 (299)
Q Consensus 97 g~~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIi 150 (299)
+-.+|.-++|.|.+..+++++.|+.|+ ++|+-+. .++++.+.|-..|++
T Consensus 87 ~v~~v~~~~g~p~~~i~~lk~~g~~v~-~~v~s~~----~a~~a~~~GaD~Ivv 135 (307)
T TIGR03151 87 KVPVVTTGAGNPGKYIPRLKENGVKVI-PVVASVA----LAKRMEKAGADAVIA 135 (307)
T ss_pred CCCEEEEcCCCcHHHHHHHHHcCCEEE-EEcCCHH----HHHHHHHcCCCEEEE
Confidence 444555678999999999999999988 5776664 456677778888887
No 91
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=37.90 E-value=2.7e+02 Score=26.02 Aligned_cols=113 Identities=12% Similarity=0.117 Sum_probs=62.0
Q ss_pred cHHHHHHHHHHHHhhCCCC-ceEEeeccc----------cCH----HHHHHHHhcCcEEecCCccccccccc-cCCCEEE
Q 022297 38 GVERAVQIAYEARKQFPEE-KIWITNEII----------HNP----TVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVV 101 (299)
Q Consensus 38 GVkRAV~~a~~~~~~~~~~-~VytlG~LI----------HN~----~Vv~~L~~~GV~~v~~~~~~~~~~ei-~~g~~VI 101 (299)
+.+-+.+.+.+..+...+. ++|..|... -.+ .+++..++.|+.+.-...+....+.. .-|-..|
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~~l~~G~~~i 197 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYGAEAIRRAIRAGVDTI 197 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEE
Confidence 3455555666666543221 677766421 122 34555677887766432211111111 1232234
Q ss_pred EcCCCCCHHHHHHHHhcCCeEEeCCChhhHH-------------------------HHHHHHHHhhCCCeEEEEec
Q 022297 102 LPAFGAAVEEMVTLNNKNVQIVDTTCPWVSK-------------------------VWTSVEKHKKGDYTSIIHGK 152 (299)
Q Consensus 102 IRAHGvs~~v~~~l~~kgl~VIDATCP~V~k-------------------------v~~~v~~~~~~GY~IVIiGd 152 (299)
.=+-.++++..+.++++|+.++ .||.+.. ....++++.+.|-.|.+=-|
T Consensus 198 ~H~~~~~~~~~~~l~~~g~~~~--~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~GTD 271 (342)
T cd01299 198 EHGFLIDDETIELMKEKGIFLV--PTLATYEALAAEGAAPGLPADSAEKVALVLEAGRDALRRAHKAGVKIAFGTD 271 (342)
T ss_pred eecCCCCHHHHHHHHHCCcEEe--CcHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecC
Confidence 3223368999999999999985 8887532 22446778888866554333
No 92
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=37.68 E-value=1.1e+02 Score=27.89 Aligned_cols=81 Identities=9% Similarity=-0.024 Sum_probs=44.1
Q ss_pred eeccccCHHHHHHHHhcCcEEecCCc-c---ccccccccCCCEEEEcCCCCCHHHH--HHHHhcCCeEEeCCChhhHHHH
Q 022297 61 TNEIIHNPTVNKRLEEMAVQNIPVEE-G---KKQFDVVNKGDVVVLPAFGAAVEEM--VTLNNKNVQIVDTTCPWVSKVW 134 (299)
Q Consensus 61 lG~LIHN~~Vv~~L~~~GV~~v~~~~-~---~~~~~ei~~g~~VIIRAHGvs~~v~--~~l~~kgl~VIDATCP~V~kv~ 134 (299)
-++=-.++.+.+.|+++|+..|-... . .........++.+.+|-||-+.... -...+ +....+-
T Consensus 125 R~~sW~~~~~~~~l~~~~~~~v~~d~~~~~~~p~~~~~~~~~~~y~RlhG~~~~~~~~~~Ys~----------~eL~~~a 194 (230)
T PF01904_consen 125 RHPSWFTEEVFELLREHGVALVIADSPRLPSLPPPEPQTTPDFAYVRLHGRNGEGWYDYRYSD----------EELEEWA 194 (230)
T ss_dssp -BGGGGCHHHHHHHHHTT-EEEEEE---BTTC------SSTTEEEEEE--S-TTTTTB----H----------HHHHHHH
T ss_pred CCcchhhHHHHHHHHHcCCEEEEeCCcccCCCCCcccccCCCCeEEeeccCcccccccccCCH----------HHHHHHH
Confidence 34433489999999999998774311 1 1001111124789999999987621 00000 4446677
Q ss_pred HHHHHHhhCCCeEEEEe
Q 022297 135 TSVEKHKKGDYTSIIHG 151 (299)
Q Consensus 135 ~~v~~~~~~GY~IVIiG 151 (299)
..++++.++|..|.++=
T Consensus 195 ~~i~~~~~~~~~v~v~f 211 (230)
T PF01904_consen 195 ERIRAWAAQGKEVYVFF 211 (230)
T ss_dssp HHHHHHHTCSSEEEEEE
T ss_pred HHHHHHHHcCCCEEEEE
Confidence 77788888887776654
No 93
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=37.41 E-value=37 Score=33.67 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=25.0
Q ss_pred cCccchhhhHHhhcCCceEEEEEcCCCCCcchh
Q 022297 248 FGVENMQCIRWLRKRSILSWLLVGGTRAIPHTF 280 (299)
Q Consensus 248 ~g~~~~~ei~~l~~~~vd~~lvvG~~~s~~~~~ 280 (299)
||.=+...++++.+..-|.+|+|||+++-+.+.
T Consensus 60 wg~ynes~~~eI~~lnpd~VLIIGGp~AVs~~y 92 (337)
T COG2247 60 WGIYNESVLDEIIELNPDLVLIIGGPIAVSPNY 92 (337)
T ss_pred cccccHHHHHHHHhhCCceEEEECCCCcCChhH
Confidence 355555666677788999999999999866544
No 94
>PRK08005 epimerase; Validated
Probab=37.12 E-value=2.9e+02 Score=25.41 Aligned_cols=75 Identities=5% Similarity=-0.020 Sum_probs=50.6
Q ss_pred ccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCC
Q 022297 65 IHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGD 144 (299)
Q Consensus 65 IHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~G 144 (299)
-|-...+++|++.|+..+.= ++-+| -.++--+.+|.+.+.+++.--.-+|.- =.|.+-.+.+..+.+.|
T Consensus 13 ~~l~~el~~l~~~g~d~lHi--------DvMDG--~FVPN~tfG~~~i~~l~~~t~~~~DvH-LMv~~P~~~i~~~~~~g 81 (210)
T PRK08005 13 LRYAEALTALHDAPLGSLHL--------DIEDT--SFINNITFGMKTIQAVAQQTRHPLSFH-LMVSSPQRWLPWLAAIR 81 (210)
T ss_pred HHHHHHHHHHHHCCCCEEEE--------eccCC--CcCCccccCHHHHHHHHhcCCCCeEEE-eccCCHHHHHHHHHHhC
Confidence 45566788999999877751 23344 456777889999999987421112221 13667888999999998
Q ss_pred CeEEEE
Q 022297 145 YTSIIH 150 (299)
Q Consensus 145 Y~IVIi 150 (299)
-..|.+
T Consensus 82 ad~It~ 87 (210)
T PRK08005 82 PGWIFI 87 (210)
T ss_pred CCEEEE
Confidence 777666
No 95
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=36.79 E-value=2.6e+02 Score=24.40 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=48.6
Q ss_pred CceEEeeccccCHHHHHHHHhcC--cEEecCCccccccccccC------CCEEEEcCCCCCHHHHHHHHhcCCeEEeCCC
Q 022297 56 EKIWITNEIIHNPTVNKRLEEMA--VQNIPVEEGKKQFDVVNK------GDVVVLPAFGAAVEEMVTLNNKNVQIVDTTC 127 (299)
Q Consensus 56 ~~VytlG~LIHN~~Vv~~L~~~G--V~~v~~~~~~~~~~ei~~------g~~VIIRAHGvs~~v~~~l~~kgl~VIDATC 127 (299)
..|+.+|+++. +.+.+.|++.+ +..|....+.. ..+|. ++.=|.=.||-+..
T Consensus 31 d~iih~GDi~~-~~~~~~l~~~~~~~~~V~GN~D~~--~~lp~~~~~~~~g~~i~l~HG~~~~----------------- 90 (178)
T cd07394 31 QHVLCTGNLCS-KETYDYLKTIAPDVHIVRGDFDEN--LNYPETKVITVGQFKIGLIHGHQVV----------------- 90 (178)
T ss_pred CEEEECCCCCC-HHHHHHHHhhCCceEEEECCCCcc--ccCCCcEEEEECCEEEEEEECCcCC-----------------
Confidence 46999999976 88889998854 66776543210 12232 22234456774310
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEEecCCCccee
Q 022297 128 PWVSKVWTSVEKHKKGDYTSIIHGKYSHEETV 159 (299)
Q Consensus 128 P~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~ 159 (299)
|+- .-....+...+.++.+++.|+...|.+.
T Consensus 91 ~~~-~~~~~~~~~~~~~~dvii~GHTH~p~~~ 121 (178)
T cd07394 91 PWG-DPDSLAALQRQLDVDILISGHTHKFEAF 121 (178)
T ss_pred CCC-CHHHHHHHHHhcCCCEEEECCCCcceEE
Confidence 100 0112222234567899999999999876
No 96
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=36.78 E-value=77 Score=32.65 Aligned_cols=119 Identities=23% Similarity=0.239 Sum_probs=71.4
Q ss_pred ccccchHHHHHHhcCceeeeeceEEEEeCCCCCcccHHHHHHHHHHHHhhCCC----CceEEeeccccCH----HHHHHH
Q 022297 3 QEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPE----EKIWITNEIIHNP----TVNKRL 74 (299)
Q Consensus 3 ~~~~s~~~~~~~~~~~~~~~~~M~IilA~~~GFC~GVkRAV~~a~~~~~~~~~----~~VytlG~LIHN~----~Vv~~L 74 (299)
.||.++++++.-+.-++--....+|.=|-+ =-|-++.+.++.++.+. ---||..| ||+= ...++|
T Consensus 93 rhyaDDvVe~Fv~ka~~nGidvfRiFDAlN------D~RNl~~ai~a~kk~G~h~q~~i~YT~sP-vHt~e~yv~~akel 165 (472)
T COG5016 93 RHYADDVVEKFVEKAAENGIDVFRIFDALN------DVRNLKTAIKAAKKHGAHVQGTISYTTSP-VHTLEYYVELAKEL 165 (472)
T ss_pred cCCchHHHHHHHHHHHhcCCcEEEechhcc------chhHHHHHHHHHHhcCceeEEEEEeccCC-cccHHHHHHHHHHH
Confidence 478899988876543332223334444422 12445666666655421 13688888 8985 356788
Q ss_pred HhcCcEEec--CCccc-------cccccccC--CCEEEEcCC---CCCHHHHHHHHhcCCeEEeCCCh
Q 022297 75 EEMAVQNIP--VEEGK-------KQFDVVNK--GDVVVLPAF---GAAVEEMVTLNNKNVQIVDTTCP 128 (299)
Q Consensus 75 ~~~GV~~v~--~~~~~-------~~~~ei~~--g~~VIIRAH---Gvs~~v~~~l~~kgl~VIDATCP 128 (299)
.++|+.-+- +-.+. +.+..+++ +-.|-+-.| |+++-.+-++-+.|..+||+.|-
T Consensus 166 ~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTAis 233 (472)
T COG5016 166 LEMGVDSICIKDMAGLLTPYEAYELVKAIKKELPVPVELHTHATSGMAEMTYLKAVEAGVDGIDTAIS 233 (472)
T ss_pred HHcCCCEEEeecccccCChHHHHHHHHHHHHhcCCeeEEecccccchHHHHHHHHHHhCcchhhhhhc
Confidence 889986542 11110 11112222 223556666 88899999999999999999874
No 97
>COG2454 Uncharacterized conserved protein [Function unknown]
Probab=36.72 E-value=1.9e+02 Score=27.07 Aligned_cols=66 Identities=14% Similarity=0.341 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhhC-CCCceEEeeccc-cCHHHHH----HHHhcCcE----EecCCc-cccccccccCCCEEEEcC
Q 022297 39 VERAVQIAYEARKQF-PEEKIWITNEII-HNPTVNK----RLEEMAVQ----NIPVEE-GKKQFDVVNKGDVVVLPA 104 (299)
Q Consensus 39 VkRAV~~a~~~~~~~-~~~~VytlG~LI-HN~~Vv~----~L~~~GV~----~v~~~~-~~~~~~ei~~g~~VIIRA 104 (299)
+.+|+++..+.+++. ++.-+|.++..+ |.-.+-. .|++.||. .++..| ++..++-+..+|.+||.+
T Consensus 112 t~~Al~lil~~lk~~~~k~vi~L~d~~vs~SGel~~~i~~~mK~~~I~g~~~lvk~~D~eLk~~e~VaTsD~~IIds 188 (211)
T COG2454 112 TDKALDLLLEFLKDVEPKSVIFLFDAPVSKSGELAGRIEEKMKSLGIPGEASLVKNADFELKELEVVATSDSGIIDS 188 (211)
T ss_pred HHHHHHHHHHHHHHcCCceEEEEeCCCCCccHHHHHHHHHHHHhcCCCceeEeccCcCHHHHhcCceeecCeeeeee
Confidence 578999999998875 444589999999 5544433 34556665 555443 222333333455555544
No 98
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=35.90 E-value=24 Score=29.00 Aligned_cols=26 Identities=15% Similarity=0.391 Sum_probs=19.0
Q ss_pred cCCCCCHH----HHHHHHhcCCeEEeCCChh
Q 022297 103 PAFGAAVE----EMVTLNNKNVQIVDTTCPW 129 (299)
Q Consensus 103 RAHGvs~~----v~~~l~~kgl~VIDATCP~ 129 (299)
|-+|+... ..+.+++.|++|| .+|||
T Consensus 52 rGqGia~~L~~~al~~ar~~g~kii-P~Csf 81 (99)
T COG2388 52 RGQGIAQKLVEKALEEAREAGLKII-PLCSF 81 (99)
T ss_pred cCCcHHHHHHHHHHHHHHHcCCeEc-ccchH
Confidence 44555543 3677889999999 78994
No 99
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=35.80 E-value=62 Score=26.35 Aligned_cols=42 Identities=7% Similarity=0.014 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCeE-EeCCChhhHHHHHHHHHHhhCCCe-EEEEecCC
Q 022297 109 VEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYT-SIIHGKYS 154 (299)
Q Consensus 109 ~~v~~~l~~kgl~V-IDATCP~V~kv~~~v~~~~~~GY~-IVIiGd~~ 154 (299)
.++.+.|++.|+.+ +|-. +++.++.+...+.|+. ++|+|+..
T Consensus 45 ~~la~~LR~~gi~v~~d~~----~sl~kqlk~A~k~g~~~~iiiG~~e 88 (121)
T cd00858 45 KEISEELRELGFSVKYDDS----GSIGRRYARQDEIGTPFCVTVDFDT 88 (121)
T ss_pred HHHHHHHHHCCCEEEEeCC----CCHHHHHHHhHhcCCCEEEEECcCc
Confidence 45677888889887 4543 5777777888888987 67778654
No 100
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=35.77 E-value=1.5e+02 Score=30.79 Aligned_cols=44 Identities=5% Similarity=-0.022 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCC
Q 022297 109 VEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYS 154 (299)
Q Consensus 109 ~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~ 154 (299)
......+++.|+.+.....|.-+ ...++++.++|+.++.+||.-
T Consensus 433 ~~a~~ia~~lgi~~~~~~~p~~K--~~~v~~l~~~~~~v~~VGDg~ 476 (562)
T TIGR01511 433 KTAKAVAKELGINVRAEVLPDDK--AALIKELQEKGRVVAMVGDGI 476 (562)
T ss_pred HHHHHHHHHcCCcEEccCChHHH--HHHHHHHHHcCCEEEEEeCCC
Confidence 44555566677766665556422 346677778899999999874
No 101
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=34.92 E-value=1.4e+02 Score=25.15 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=26.8
Q ss_pred cCCeEEeCCChhhH--HHHHHHHHHhhCCCeEEEE---ecCCCc
Q 022297 118 KNVQIVDTTCPWVS--KVWTSVEKHKKGDYTSIIH---GKYSHE 156 (299)
Q Consensus 118 kgl~VIDATCP~V~--kv~~~v~~~~~~GY~IVIi---Gd~~HP 156 (299)
..+-|+++..|++. -+.+.++.+.+.+..+++. |.+.||
T Consensus 91 ~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~P 134 (188)
T TIGR03310 91 DGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIVVPLYKGKRGHP 134 (188)
T ss_pred CEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEEEeecCCccCCC
Confidence 35788999999985 5666666666666656654 345677
No 102
>cd01917 ACS_2 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=34.73 E-value=61 Score=31.55 Aligned_cols=39 Identities=10% Similarity=0.104 Sum_probs=31.8
Q ss_pred HHHhcCCeEEeCC----------ChhhHHHHHHHHHHhhCCCeEEEEec
Q 022297 114 TLNNKNVQIVDTT----------CPWVSKVWTSVEKHKKGDYTSIIHGK 152 (299)
Q Consensus 114 ~l~~kgl~VIDAT----------CP~V~kv~~~v~~~~~~GY~IVIiGd 152 (299)
.+++.|+.+||.| ||-...+.++++++.++||-+++.|+
T Consensus 114 iiR~~GvplV~G~IPGva~ivG~a~~~e~~~~I~~e~q~r~~lv~l~G~ 162 (287)
T cd01917 114 IVRGLGIKMVDWTIPGEAVILGRAKDSKALKKIVDDLMGRGFMLFLCDE 162 (287)
T ss_pred HHHHcCCceecCCCCeEEEEEecCCChHHHHHHHHHHHHCCcEEEEecH
Confidence 3445677777766 55778999999999999999999993
No 103
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=34.39 E-value=1.3e+02 Score=29.50 Aligned_cols=73 Identities=12% Similarity=0.017 Sum_probs=46.4
Q ss_pred cCHHHHHHHHhcCcEEec-CCcccc-ccccccCCCEEEEcCCCCCHHHHHHHHhcCCeE-EeCCChhhHHHHHHHHH
Q 022297 66 HNPTVNKRLEEMAVQNIP-VEEGKK-QFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEK 139 (299)
Q Consensus 66 HN~~Vv~~L~~~GV~~v~-~~~~~~-~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~V-IDATCP~V~kv~~~v~~ 139 (299)
-||.+++.|.+.|..+-= +..+++ .+..=-+++.+++...+-+++.++.+.+.|+.| +|.-.-+ .++++.+++
T Consensus 38 ~~~~il~~l~~~G~g~DvaS~~El~~al~~G~~~~~Ii~~gp~K~~~~L~~ai~~gv~i~iDS~~El-~~i~~~a~~ 113 (379)
T cd06836 38 PLVPVLRLLAEAGAGAEVASPGELELALAAGFPPERIVFDSPAKTRAELREALELGVAINIDNFQEL-ERIDALVAE 113 (379)
T ss_pred CCHHHHHHHHHcCCcEEEcCHHHHHHHHHcCCChhhEEEeCCCCCHHHHHHHHHCCCEEEECCHHHH-HHHHHHHHH
Confidence 467799999999876511 211211 011001356799999999999999999999865 5554333 455555544
No 104
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=34.16 E-value=85 Score=28.16 Aligned_cols=80 Identities=19% Similarity=0.204 Sum_probs=53.0
Q ss_pred HHHHHHHhcCcEEecCCccc---------------cccccccCCCEEEEcCCCC-CHH-HHHHHHhcCCeEEeCCChhhH
Q 022297 69 TVNKRLEEMAVQNIPVEEGK---------------KQFDVVNKGDVVVLPAFGA-AVE-EMVTLNNKNVQIVDTTCPWVS 131 (299)
Q Consensus 69 ~Vv~~L~~~GV~~v~~~~~~---------------~~~~ei~~g~~VIIRAHGv-s~~-v~~~l~~kgl~VIDATCP~V~ 131 (299)
+++.+|.++|+.+-...... .....+ ...+|-++.||. +.+ ....|...|+.++.
T Consensus 63 ~~L~~L~~~G~l~~~~~~~~~~~~~f~~~~g~~~~~a~~~l-~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~------- 134 (193)
T TIGR03882 63 YALDRLERRGYLVEDAPELPPAAAAFWSGLGVDPAAALERL-RQLTVTVLSFGEGGAAALAAALAAAGIRIAP------- 134 (193)
T ss_pred HHHHHHHHCCCEeccCCCCCHHHHHHHHHcCCCHHHHHHHH-hcCcEEEEecCCCcHHHHHHHHHHcCCCccC-------
Confidence 67888999998764321000 000111 134688999994 556 88889999999986
Q ss_pred HHHHHHHHHhhCCCeEEEEecCCCcceeeecccC
Q 022297 132 KVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA 165 (299)
Q Consensus 132 kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~ 165 (299)
.+.+-+||+.=|..+||...++-.+
T Consensus 135 ---------~~a~l~vVl~~Dyl~p~L~~~n~~~ 159 (193)
T TIGR03882 135 ---------SEADLTVVLTDDYLDPELAAINQRA 159 (193)
T ss_pred ---------CCCCEEEEEeCCCCChHHHHHHHHH
Confidence 3356777777788889887775433
No 105
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=34.11 E-value=2.5e+02 Score=22.57 Aligned_cols=39 Identities=8% Similarity=0.104 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHH
Q 022297 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTL 115 (299)
Q Consensus 68 ~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l 115 (299)
..+...|.+.|...+++. .+-|.+||.+=+|.....+++
T Consensus 17 e~i~~~l~~~G~~~~~~~---------e~AD~iiiNTC~V~~~Ae~k~ 55 (98)
T PF00919_consen 17 ERIASILQAAGYEIVDDP---------EEADVIIINTCTVRESAEQKS 55 (98)
T ss_pred HHHHHHHHhcCCeeeccc---------ccCCEEEEEcCCCCcHHHHHH
Confidence 456778899999988652 235788998888877665444
No 106
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=33.92 E-value=89 Score=29.96 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=25.8
Q ss_pred ccCCCE-EEEcCCCCCHHHH---HHHHhcCCeEEeCCCh
Q 022297 94 VNKGDV-VVLPAFGAAVEEM---VTLNNKNVQIVDTTCP 128 (299)
Q Consensus 94 i~~g~~-VIIRAHGvs~~v~---~~l~~kgl~VIDATCP 128 (299)
+.++|. |+|+.-|-+|.+. +.++++|..+|=-||.
T Consensus 124 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~ 162 (291)
T TIGR00274 124 LTKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACN 162 (291)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECC
Confidence 445776 4699999999775 4566788888877773
No 107
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=33.69 E-value=3.8e+02 Score=26.63 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=36.4
Q ss_pred eccccCHHHHHHHHhcCcEEecCCccccccccccC-CCEEEEcCCCCCHH--HHHHHHhcCCeEE
Q 022297 62 NEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNK-GDVVVLPAFGAAVE--EMVTLNNKNVQIV 123 (299)
Q Consensus 62 G~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~-g~~VIIRAHGvs~~--v~~~l~~kgl~VI 123 (299)
-+.-.|+...+.|+++|+.+....+. +.+.+ -| +||-+=||+|. .+++++++|+.|+
T Consensus 29 ~D~~~~~~~~~~l~~~gi~~~~~~~~----~~~~~~~d-~vV~SpgI~~~~~~~~~a~~~~i~v~ 88 (448)
T TIGR01081 29 SDANVYPPMSTQLEAQGIEIIEGFDA----AQLEPKPD-LVVIGNAMKRGNPCVEAVLNLNLPYT 88 (448)
T ss_pred ECCCCCcHHHHHHHHCCCEEeCCCCH----HHCCCCCC-EEEECCCCCCCCHHHHHHHHCCCCEE
Confidence 34444665566799999988643211 22222 34 67778899865 5677788887775
No 108
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=33.64 E-value=85 Score=29.22 Aligned_cols=60 Identities=13% Similarity=0.095 Sum_probs=35.5
Q ss_pred eeEEEEccccChHHHHHHHHHHHHHhhhccCccchhhhHHhhcCCceEEEEEcCCCCCcchhHhhhhcc
Q 022297 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIRWLRKRSILSWLLVGGTRAIPHTFKRLQKTV 287 (299)
Q Consensus 219 kv~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~~~ei~~l~~~~vd~~lvvG~~~s~~~~~~~~~~~~ 287 (299)
.+..++-+|++...+.+. ++. ..+..|...++-. ....++.+|||...++.++.+++.-+
T Consensus 111 ~il~~~tSt~~~~~l~~~---~~~-~~r~~g~h~~~Pv-----~~~~Lve~v~g~~t~~~~~~~~~~~l 170 (288)
T PRK09260 111 CYIATNTSTMSPTEIASF---TKR-PERVIAMHFFNPV-----HKMKLVELIRGLETSDETVQVAKEVA 170 (288)
T ss_pred cEEEEcCCCCCHHHHHhh---cCC-cccEEEEecCCCc-----ccCceEEEeCCCCCCHHHHHHHHHHH
Confidence 445578888888775554 321 1111222221100 11258889999999999999887644
No 109
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=33.25 E-value=1.2e+02 Score=27.45 Aligned_cols=72 Identities=13% Similarity=0.078 Sum_probs=45.7
Q ss_pred cccchHHHHHHhcCceeeeeceEEEEeCCCCCc----ccHHHHHHHHHHHHhhCCCCceEEeeccc-----cCHHHHHHH
Q 022297 4 EYTSDIIKKLKENGFEYTWGNVKVKLAESYGFC----WGVERAVQIAYEARKQFPEEKIWITNEII-----HNPTVNKRL 74 (299)
Q Consensus 4 ~~~s~~~~~~~~~~~~~~~~~M~IilA~~~GFC----~GVkRAV~~a~~~~~~~~~~~VytlG~LI-----HN~~Vv~~L 74 (299)
.|.+.+++.+++.||.+.+-.+. +..++ .|...+++.+.+.+. .+.|..+++.- .-|.+++.|
T Consensus 139 ~~~~~~~~~l~~~Gy~~v~w~v~-----~~Dw~~~~~~~~~~~~~~v~~~~~---~g~IiLlHd~~~~t~~aL~~ii~~l 210 (224)
T TIGR02884 139 VFSERTLAYTKELGYYTVFWSLA-----FKDWKVDEQPGWQYAYKQIMKKIH---PGAILLLHAVSKDNAEALDKIIKDL 210 (224)
T ss_pred CcCHHHHHHHHHcCCcEEecccc-----CcccCCCCCCCHHHHHHHHHhcCC---CCcEEEEECCCCCHHHHHHHHHHHH
Confidence 46677888899999876433221 22222 244555554433332 35799988742 347788999
Q ss_pred HhcCcEEec
Q 022297 75 EEMAVQNIP 83 (299)
Q Consensus 75 ~~~GV~~v~ 83 (299)
+++|..++.
T Consensus 211 k~~Gy~fvt 219 (224)
T TIGR02884 211 KEQGYTFKS 219 (224)
T ss_pred HHCCCEEEE
Confidence 999999985
No 110
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=33.24 E-value=80 Score=24.20 Aligned_cols=49 Identities=12% Similarity=0.094 Sum_probs=38.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccCC
Q 022297 99 VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG 166 (299)
Q Consensus 99 ~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~~ 166 (299)
.+|+=.||..... .+-+..|+.++++||.|+.+=.++|-...|..|+.+
T Consensus 17 ~~v~i~HG~~eh~-------------------~ry~~~a~~L~~~G~~V~~~D~rGhG~S~g~rg~~~ 65 (79)
T PF12146_consen 17 AVVVIVHGFGEHS-------------------GRYAHLAEFLAEQGYAVFAYDHRGHGRSEGKRGHID 65 (79)
T ss_pred EEEEEeCCcHHHH-------------------HHHHHHHHHHHhCCCEEEEECCCcCCCCCCcccccC
Confidence 3666689885443 334557899999999999999999999998887764
No 111
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=33.23 E-value=51 Score=30.72 Aligned_cols=29 Identities=14% Similarity=0.393 Sum_probs=24.6
Q ss_pred EEeCCChhhHHHHHHHHHHhhCC-CeEEEE
Q 022297 122 IVDTTCPWVSKVWTSVEKHKKGD-YTSIIH 150 (299)
Q Consensus 122 VIDATCP~V~kv~~~v~~~~~~G-Y~IVIi 150 (299)
..|-+|||=+|.|..++.+.+.| .++.++
T Consensus 124 FtDp~CpyC~kl~~~l~~~~~~g~V~v~~i 153 (251)
T PRK11657 124 FADPNCPYCKQFWQQARPWVDSGKVQLRHI 153 (251)
T ss_pred EECCCChhHHHHHHHHHHHhhcCceEEEEE
Confidence 47999999999999999998888 565555
No 112
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=32.82 E-value=4.3e+02 Score=26.41 Aligned_cols=104 Identities=11% Similarity=0.142 Sum_probs=58.0
Q ss_pred eEEEEeCCCCCcc----cHHHHHHHHHHHHhhC--CCCceEEeeccccC--HHHHHHHHhcCcEEecCC--ccccccccc
Q 022297 25 VKVKLAESYGFCW----GVERAVQIAYEARKQF--PEEKIWITNEIIHN--PTVNKRLEEMAVQNIPVE--EGKKQFDVV 94 (299)
Q Consensus 25 M~IilA~~~GFC~----GVkRAV~~a~~~~~~~--~~~~VytlG~LIHN--~~Vv~~L~~~GV~~v~~~--~~~~~~~ei 94 (299)
..|+.+...||.. |...|++...+.+.+. ....|-.+|++--. .++..-|++.|+.++.-. .+.+++...
T Consensus 130 ~pvv~v~t~Gf~g~~~~G~~~~~~alv~~~~~~~~~~~~VniiG~~~~~d~~el~~lL~~~Gi~v~~~lp~~~~~d~~~~ 209 (427)
T PRK02842 130 VPVLNYSGSGLETTFTQGEDAVLAALVPFCPEAPADHPSLVLVGSLADVVEDQLTLEFKKLGIGVVGFLPARRFTELPAI 209 (427)
T ss_pred CeEEEeeCCCccccHHHHHHHHHHHHhhhcccccCCCCcEEEEEeCCcchHHHHHHHHHHcCCeeEEEeCCccHHHHhhc
Confidence 4678888899853 3555555444433321 13458888984222 236666789999875211 122233333
Q ss_pred cCCCEEEEcCCCCCHHHHHHHHhcCCeEEeCCChh
Q 022297 95 NKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPW 129 (299)
Q Consensus 95 ~~g~~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~ 129 (299)
+.+..++. .+......-+.|++.|...+-..-|+
T Consensus 210 ~~~~~~~~-~~~~~~~~A~~L~~~GiP~~~~~~P~ 243 (427)
T PRK02842 210 GPGTVVAL-AQPFLSDTARALRERGAKVLTAPFPL 243 (427)
T ss_pred CcCcEEEE-eCHHHHHHHHHHHHcCCccccCCCCc
Confidence 34544432 22222246667788899887776665
No 113
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=32.40 E-value=61 Score=34.59 Aligned_cols=99 Identities=17% Similarity=0.125 Sum_probs=81.2
Q ss_pred EeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHH
Q 022297 60 ITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEK 139 (299)
Q Consensus 60 tlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~ 139 (299)
=||=|--|+...+.+++-|+.+|-. +.++ |||=|---.-++.+.+.|+.+|=.+---+...-..+..
T Consensus 81 GYGFLSENa~FA~a~~~aGlvfIGP----------~~~a---I~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~ 147 (645)
T COG4770 81 GYGFLSENADFAQAVEDAGLVFIGP----------SAGA---IRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAI 147 (645)
T ss_pred CccccccCHHHHHHHHHCCcEEECC----------CHHH---HHHhccHHHHHHHHHHcCCCccCCCCCcccCHHHHHHH
Confidence 5889999999999999999999963 2244 89999888889999999999999999888888888888
Q ss_pred HhhCCCeEEEEecCCCcceeeecccCCe-EEEEcChhhHHhh
Q 022297 140 HKKGDYTSIIHGKYSHEETVATASFAGK-YIIVKNMKEAEYV 180 (299)
Q Consensus 140 ~~~~GY~IVIiGd~~HPEV~Gi~g~~~~-~~vv~~~~e~~~l 180 (299)
..+=||-|+| ++-.|=.++ --++.+++|+...
T Consensus 148 A~eiGyPVlI---------KAsaGGGGKGMRvv~~~~e~~e~ 180 (645)
T COG4770 148 AEEIGYPVLI---------KASAGGGGKGMRVVETPEEFAEA 180 (645)
T ss_pred HHhcCCcEEE---------EeccCCCCCceEeecCHHHHHHH
Confidence 8899999987 334443343 5788999988653
No 114
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=32.25 E-value=2.4e+02 Score=23.48 Aligned_cols=19 Identities=16% Similarity=0.004 Sum_probs=11.7
Q ss_pred HHHHHhhC-CCeEEEEecCC
Q 022297 136 SVEKHKKG-DYTSIIHGKYS 154 (299)
Q Consensus 136 ~v~~~~~~-GY~IVIiGd~~ 154 (299)
.++++.++ ...+++|||..
T Consensus 153 ~~~~~~~~~~~~~i~iGD~~ 172 (188)
T TIGR01489 153 VIHKLSEPKYQHIIYIGDGV 172 (188)
T ss_pred HHHHHHhhcCceEEEECCCc
Confidence 44444444 67788888753
No 115
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=32.17 E-value=4.2e+02 Score=24.64 Aligned_cols=80 Identities=11% Similarity=0.117 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEec--CCcc-ccc---c-cccc--CCCEEEEcCCCCCH
Q 022297 39 VERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP--VEEG-KKQ---F-DVVN--KGDVVVLPAFGAAV 109 (299)
Q Consensus 39 VkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~--~~~~-~~~---~-~ei~--~g~~VIIRAHGvs~ 109 (299)
|.|.+.+|++..+. +..|+-+..- +.....+.|++.|..+.. +..+ .++ + +.+. ..|.||+-..+++.
T Consensus 17 v~Rcl~LA~~l~~~--g~~v~f~~~~-~~~~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV~D~y~~~~ 93 (279)
T TIGR03590 17 VMRCLTLARALHAQ--GAEVAFACKP-LPGDLIDLLLSAGFPVYELPDESSRYDDALELINLLEEEKFDILIVDHYGLDA 93 (279)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEeCC-CCHHHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcCCCEEEEcCCCCCH
Confidence 78999999988653 2344433222 345557889999987653 2110 000 0 0111 13556666667777
Q ss_pred HHHHHHHhcCCe
Q 022297 110 EEMVTLNNKNVQ 121 (299)
Q Consensus 110 ~v~~~l~~kgl~ 121 (299)
+..+.++.++..
T Consensus 94 ~~~~~~k~~~~~ 105 (279)
T TIGR03590 94 DWEKLIKEFGRK 105 (279)
T ss_pred HHHHHHHHhCCe
Confidence 777777666644
No 116
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=31.93 E-value=1.4e+02 Score=25.25 Aligned_cols=67 Identities=9% Similarity=0.051 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCC-e--EEeCC--ChhhHHHHHHHHHHhh
Q 022297 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV-Q--IVDTT--CPWVSKVWTSVEKHKK 142 (299)
Q Consensus 68 ~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl-~--VIDAT--CP~V~kv~~~v~~~~~ 142 (299)
+.+++.|+++|+.+.= -.|| -.......+++.|+ . |.--. =|.=+-..+.++++..
T Consensus 133 ~~~l~~L~~~Gi~~~i-----------~TGD--------~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~ 193 (215)
T PF00702_consen 133 KEALQELKEAGIKVAI-----------LTGD--------NESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQV 193 (215)
T ss_dssp HHHHHHHHHTTEEEEE-----------EESS--------EHHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTC
T ss_pred hhhhhhhhccCcceee-----------eecc--------ccccccccccccccccccccccccccccchhHHHHHHHHhc
Confidence 6778888888875431 1122 12334455556666 2 33222 2666666777788776
Q ss_pred CCCeEEEEecC
Q 022297 143 GDYTSIIHGKY 153 (299)
Q Consensus 143 ~GY~IVIiGd~ 153 (299)
++..++.+||.
T Consensus 194 ~~~~v~~vGDg 204 (215)
T PF00702_consen 194 KPGEVAMVGDG 204 (215)
T ss_dssp TGGGEEEEESS
T ss_pred CCCEEEEEccC
Confidence 77799999984
No 117
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=31.38 E-value=87 Score=32.90 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=43.7
Q ss_pred CCCcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEec
Q 022297 33 YGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (299)
Q Consensus 33 ~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~ 83 (299)
..+-..|.++|+.+.++.++. +++|.+.|++.-+|..+..|-.+|+..+.
T Consensus 474 ~~~hPaV~~~i~~vi~~a~~~-g~~v~vCGe~a~~p~~~~~l~~~G~~~ls 523 (565)
T TIGR01417 474 QPYNPAVLRLIKLVIDAAKAE-GIWVGMCGEMAGDERAIPLLLGLGLRELS 523 (565)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCeEEEeCCcCCCHHHHHHHHHCCCCEEE
Confidence 446789999999998888764 57899999999999999999999999885
No 118
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=30.96 E-value=2.4e+02 Score=25.43 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=33.4
Q ss_pred ccCCCEE-EEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccCCeEEEEc
Q 022297 94 VNKGDVV-VLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVK 172 (299)
Q Consensus 94 i~~g~~V-IIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~~~~~vv~ 172 (299)
..+||.+ +|+.-|-++++.+.+ +...+.|-.+|.+-...+..+..+.+.++-.+.+.
T Consensus 107 ~~~gDvli~iS~SG~s~~v~~a~----------------------~~Ak~~G~~vI~IT~~~~s~l~~l~~~~D~~i~ip 164 (196)
T PRK10886 107 GHAGDVLLAISTRGNSRDIVKAV----------------------EAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIP 164 (196)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHH----------------------HHHHHCCCEEEEEeCCCCChhhhccccCCEEEEcC
Confidence 3467764 588888887765544 33444566666665555555555544444444443
Q ss_pred C
Q 022297 173 N 173 (299)
Q Consensus 173 ~ 173 (299)
+
T Consensus 165 ~ 165 (196)
T PRK10886 165 S 165 (196)
T ss_pred C
Confidence 3
No 119
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.69 E-value=1.9e+02 Score=28.06 Aligned_cols=101 Identities=6% Similarity=-0.021 Sum_probs=66.6
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEec--CCc--cc-cccccccCCC
Q 022297 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP--VEE--GK-KQFDVVNKGD 98 (299)
Q Consensus 24 ~M~IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~--~~~--~~-~~~~ei~~g~ 98 (299)
.|=.+..+|.-||-|+..||+.+.+.... ..+|-+-- .|.......-+.|+-++- +-+ +. +..+-+ .+.
T Consensus 168 D~iLIkdNHi~~~g~i~~av~~~r~~~~~--~~kIeVEv---~tleea~~a~~agaDiImLDnmspe~l~~av~~~-~~~ 241 (290)
T PRK06559 168 DAIMLKDNHIAAVGSVQKAIAQARAYAPF--VKMVEVEV---ESLAAAEEAAAAGADIIMLDNMSLEQIEQAITLI-AGR 241 (290)
T ss_pred ceEEEcHHHHHhhccHHHHHHHHHHhCCC--CCeEEEEC---CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh-cCc
Confidence 35667788988988999999998776541 23455443 455555555566776653 211 11 011111 245
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCeEEeCCChhh
Q 022297 99 VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWV 130 (299)
Q Consensus 99 ~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V 130 (299)
.++.=|=||+++-..+..+.|+.+|...+|+-
T Consensus 242 ~~leaSGGI~~~ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 242 SRIECSGNIDMTTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred eEEEEECCCCHHHHHHHHhcCCCEEEeCcccc
Confidence 56777779999999999999999999988764
No 120
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=30.64 E-value=3e+02 Score=25.88 Aligned_cols=135 Identities=11% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCeEEEEecCCCcceeeecccCCeEEEEcChhhHHhh---hhhhccCccCCCCccHHHHHHHHHHhhcCC
Q 022297 134 WTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV---CDYILGGELNGSSSTKEAFLEKFKKAVSKG 210 (299)
Q Consensus 134 ~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~~~~~vv~~~~e~~~l---~~~~~~~q~~~tt~~~e~f~~~~~~~~~~~ 210 (299)
+..++.+.+.|++|+++ +++-+...-+.... ..+..+++++-.- +++++.. ..+....++.++.+...+.+|
T Consensus 13 ~~mA~~L~~~g~~v~v~-dr~~~~~~~~~~~g--~~~~~s~~~~~~~~~~advVi~~--vp~~~~~~~v~~~i~~~l~~g 87 (299)
T PRK12490 13 GNMAERLREDGHEVVGY-DVNQEAVDVAGKLG--ITARHSLEELVSKLEAPRTIWVM--VPAGEVTESVIKDLYPLLSPG 87 (299)
T ss_pred HHHHHHHHhCCCEEEEE-ECCHHHHHHHHHCC--CeecCCHHHHHHhCCCCCEEEEE--ecCchHHHHHHHHHhccCCCC
Q ss_pred CCCCCCCceeEEEEccccChHHHHHHHHHHHHHhhhccCccchhhhHHhhcCCceEEEEEcCCCCCcchhHhhhhccc
Q 022297 211 FDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIRWLRKRSILSWLLVGGTRAIPHTFKRLQKTVE 288 (299)
Q Consensus 211 ~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~~~ei~~l~~~~vd~~lvvG~~~s~~~~~~~~~~~~~ 288 (299)
- .++.-+|.+.....++.+.+++....+...-..--...-.++. .+.+|| +...|.|++..++
T Consensus 88 ~---------ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~---~~~~gG---~~~~~~~~~~~l~ 150 (299)
T PRK12490 88 D---------IVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGY---CLMVGG---DKEIYDRLEPVFK 150 (299)
T ss_pred C---------EEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCC---eEEecC---CHHHHHHHHHHHH
No 121
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=30.55 E-value=1.3e+02 Score=27.88 Aligned_cols=53 Identities=9% Similarity=0.038 Sum_probs=40.6
Q ss_pred EcCCCCCHHHH-HHHHhcCCeEEe--CCChhhHHHHHHHHHHhhCCCeEEEEecCC
Q 022297 102 LPAFGAAVEEM-VTLNNKNVQIVD--TTCPWVSKVWTSVEKHKKGDYTSIIHGKYS 154 (299)
Q Consensus 102 IRAHGvs~~v~-~~l~~kgl~VID--ATCP~V~kv~~~v~~~~~~GY~IVIiGd~~ 154 (299)
...|+++.+.. ..++..|+.++- ..|+.-.......+-+.+.|.+.++.|+=.
T Consensus 40 ~~~H~~~~~~~~~qA~algipl~~~~~~~~~e~~~e~l~~~l~~~gv~~vv~GdI~ 95 (223)
T TIGR00290 40 YMFHGVNAHLTDLQAESIGIPLIKLYTEGTEEDEVEELKGILHTLDVEAVVFGAIY 95 (223)
T ss_pred ccccccCHHHHHHHHHHcCCCeEEeecCCCccHHHHHHHHHHHHcCCCEEEECCcc
Confidence 47799999887 567779998765 777776666666666666799999999753
No 122
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=30.20 E-value=5.1e+02 Score=25.03 Aligned_cols=22 Identities=5% Similarity=0.046 Sum_probs=13.5
Q ss_pred eEEeeccccCHHHHHHHHhcCcE
Q 022297 58 IWITNEIIHNPTVNKRLEEMAVQ 80 (299)
Q Consensus 58 VytlG~LIHN~~Vv~~L~~~GV~ 80 (299)
+.|.|-++. +..++.|.+.|+.
T Consensus 95 i~TNG~ll~-~~~~~~L~~~g~~ 116 (378)
T PRK05301 95 LITSGVGLT-EARLAALKDAGLD 116 (378)
T ss_pred EECCCccCC-HHHHHHHHHcCCC
Confidence 566676653 4456677766654
No 123
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=30.17 E-value=1.2e+02 Score=24.17 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=18.1
Q ss_pred CCCCceEEeeccccCHHHHHHHHhcCcE
Q 022297 53 FPEEKIWITNEIIHNPTVNKRLEEMAVQ 80 (299)
Q Consensus 53 ~~~~~VytlG~LIHN~~Vv~~L~~~GV~ 80 (299)
.+.++||.+|+ +...+.|++.|+.
T Consensus 78 ~~~~~v~vlG~----~~l~~~l~~~G~e 101 (101)
T PF13344_consen 78 KGGKKVYVLGS----DGLREELREAGFE 101 (101)
T ss_dssp TTSSEEEEES-----HHHHHHHHHTTEE
T ss_pred CCCCEEEEEcC----HHHHHHHHHcCCC
Confidence 44678999996 4788889888864
No 124
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=30.12 E-value=68 Score=30.74 Aligned_cols=141 Identities=18% Similarity=0.143 Sum_probs=59.5
Q ss_pred eEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCC-CcceeeecccCCeEEEEcChh-h--HHhhhhhhccCccCCCCccH
Q 022297 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYS-HEETVATASFAGKYIIVKNMK-E--AEYVCDYILGGELNGSSSTK 196 (299)
Q Consensus 121 ~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~-HPEV~Gi~g~~~~~~vv~~~~-e--~~~l~~~~~~~q~~~tt~~~ 196 (299)
+|...++|..... .+-+.+++||+.. ||+-..+. -....+....-. . ++.+ +.+.
T Consensus 134 ~vlGc~~~~~~~~--------~~~~~~l~IG~g~fh~~~l~l~-~~~~v~~~dP~~~~~~~e~~------------~~~~ 192 (307)
T PF01866_consen 134 QVLGCTYPSADSL--------DDDDAILFIGGGRFHLLGLMLS-PGKPVYRYDPYSKTLSVEDI------------SYDI 192 (307)
T ss_dssp B-BTTB-GGG-S----------S-SEEEEESSSSHHHHHHHHH-H-SEEEEE-TT--T--EEE----------------T
T ss_pred cccCCccCccccc--------ccccEEEEEcCCchHHHHHHHh-cCCCEEEeCCCcccceeecc------------cccH
Confidence 5566676666544 4568899999865 99876665 112233332210 0 0000 1122
Q ss_pred HHHHHHHHHhhcCCCCCCCCCceeEEEEcc---ccChHHHHHHHHHHHHHhhhccCccchhhhH--Hhhc-CCceEEEEE
Q 022297 197 EAFLEKFKKAVSKGFDPDVDLVKVGIANQT---TMLKGETEEIGKLVEKTMMRKFGVENMQCIR--WLRK-RSILSWLLV 270 (299)
Q Consensus 197 e~f~~~~~~~~~~~~d~~~~~~kv~Iv~QT---T~~~~~~~~i~~~l~~~~~~~~g~~~~~ei~--~l~~-~~vd~~lvv 270 (299)
++++.+=-..+.+ .++.+.+||+.=| ..+.+..+.+.+.+++...+.|-. .+.++. .|+. +.+|+++++
T Consensus 193 ~~~l~~R~~~i~k----a~~a~~~GIiv~tl~~q~~~~~~~~l~~~l~~~gkk~y~~-~~~~i~~~kL~nf~eid~fV~~ 267 (307)
T PF01866_consen 193 ERLLRRRYALIEK----AKDAKTFGIIVGTLGGQGYLELIKRLKKLLKKAGKKSYTL-SVGEINPAKLANFPEIDAFVQI 267 (307)
T ss_dssp HHHHHHHHHHHHH----HTT--EEEEEEE-STTT--HHHHHHHHHHHHHTT-EEEEE-EESS--GGGGTTS---SEEEE-
T ss_pred HHHHHHHHHHHHH----HhcCCEEEEEEecCCCCCCHHHHHHHHHHHHHcCCEEEEE-EECCCCHHHHhcCcccCEEEEe
Confidence 3333321122222 1233689999654 233444556666666666555532 224442 2322 369999999
Q ss_pred cCCCCCcchhHhhhhcc
Q 022297 271 GGTRAIPHTFKRLQKTV 287 (299)
Q Consensus 271 G~~~s~~~~~~~~~~~~ 287 (299)
+=+..|--..++..|.|
T Consensus 268 aCPr~~idd~~~f~kPv 284 (307)
T PF01866_consen 268 ACPRLSIDDSKDFYKPV 284 (307)
T ss_dssp S-THHHHT--S--SS-E
T ss_pred cCCCcccCchhhcCCcc
Confidence 99987766566665554
No 125
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=30.00 E-value=3.1e+02 Score=22.51 Aligned_cols=81 Identities=12% Similarity=0.108 Sum_probs=45.7
Q ss_pred ceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCeEEe----CCChhhHH
Q 022297 57 KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVD----TTCPWVSK 132 (299)
Q Consensus 57 ~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~VID----ATCP~V~k 132 (299)
.+++-|.| +|.-++.|++.|++.|=.. . |+|.. ...+-+.++.+.+++.|+..+. ..=+--..
T Consensus 8 ~~~vs~Q~--~~~d~~~la~~GfktVInl----R----pd~E~---~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~ 74 (110)
T PF04273_consen 8 DLSVSGQP--SPEDLAQLAAQGFKTVINL----R----PDGEE---PGQPSSAEEAAAAEALGLQYVHIPVDGGAITEED 74 (110)
T ss_dssp TEEEECS----HHHHHHHHHCT--EEEE-----S-----TTST---TT-T-HHCHHHHHHHCT-EEEE----TTT--HHH
T ss_pred CeEECCCC--CHHHHHHHHHCCCcEEEEC----C----CCCCC---CCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHH
Confidence 47778877 8889999999999987321 0 11110 1112334577889999999854 33355566
Q ss_pred HHHHHHHHhhCCCeEEEE
Q 022297 133 VWTSVEKHKKGDYTSIIH 150 (299)
Q Consensus 133 v~~~v~~~~~~GY~IVIi 150 (299)
+....+-+....+.|+++
T Consensus 75 v~~f~~~l~~~~~Pvl~h 92 (110)
T PF04273_consen 75 VEAFADALESLPKPVLAH 92 (110)
T ss_dssp HHHHHHHHHTTTTSEEEE
T ss_pred HHHHHHHHHhCCCCEEEE
Confidence 666666666666677665
No 126
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=29.95 E-value=2.1e+02 Score=28.43 Aligned_cols=99 Identities=14% Similarity=0.117 Sum_probs=63.0
Q ss_pred EEEe-CCCC-CcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEE--E
Q 022297 27 VKLA-ESYG-FCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVV--L 102 (299)
Q Consensus 27 IilA-~~~G-FC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VI--I 102 (299)
+++| =|+| |.-..+.|++-|.+.+++.+-.-|.+-|-..+.-..++.|.+.||-++-...- -|+-.... +
T Consensus 98 ~vVaDmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~~~~~~~I~~l~~~GIPV~gHiGL------tPQs~~~lGGy 171 (332)
T PLN02424 98 LLVGDLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGGSPSRVTAAKAIVEAGIAVMGHVGL------TPQAISVLGGF 171 (332)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCcHHHHHHHHHHHHcCCCEEEeecc------cceeehhhcCc
Confidence 4553 5677 66789999999999876542245888887666678899999999998854310 01111111 5
Q ss_pred cCCCCCHHH-------HHHHHhcCCeEEeCCChhhH
Q 022297 103 PAFGAAVEE-------MVTLNNKNVQIVDTTCPWVS 131 (299)
Q Consensus 103 RAHGvs~~v-------~~~l~~kgl~VIDATCP~V~ 131 (299)
|..|-+.+. -..+++.|..-|=-.|---.
T Consensus 172 kvqGr~~~~a~~li~dA~ale~AGAf~ivLE~Vp~~ 207 (332)
T PLN02424 172 RPQGRTAESAVKVVETALALQEAGCFAVVLECVPAP 207 (332)
T ss_pred cccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcHH
Confidence 667777653 23445566666666665444
No 127
>COG0104 PurA Adenylosuccinate synthase [Nucleotide transport and metabolism]
Probab=29.87 E-value=76 Score=32.52 Aligned_cols=82 Identities=15% Similarity=0.185 Sum_probs=58.1
Q ss_pred HHHHHHhcCcEEecC---Cccc--------cccccccC---CC-EEEEcCCCCCHHHHHHHHhcCCeEEeCCC-------
Q 022297 70 VNKRLEEMAVQNIPV---EEGK--------KQFDVVNK---GD-VVVLPAFGAAVEEMVTLNNKNVQIVDTTC------- 127 (299)
Q Consensus 70 Vv~~L~~~GV~~v~~---~~~~--------~~~~ei~~---g~-~VIIRAHGvs~~v~~~l~~kgl~VIDATC------- 127 (299)
.++.|+++|+..+.+ +++. ..+|...+ |+ .+=-..-|+.|.-.++...+|+++.|--=
T Consensus 82 Ei~~L~~~g~~~~~~rL~Is~~ahlIlpyH~~lD~~~E~~~~~~kIGTTgrGIGPaY~DKv~R~giRv~DL~d~~~l~~k 161 (430)
T COG0104 82 EIEELEERGVDVVRDRLRISDRAHLILPYHIELDRAREKALGKKKIGTTGRGIGPAYEDKVARRGIRVGDLLDPETLREK 161 (430)
T ss_pred HHHHHHhcCCccccccEEEccCcccccHHHHHHhhhhhhhcCCCcccCCCCccChhhhhhHhhhhhhhhhhcCHHHHHHH
Confidence 467888999986532 1110 11222221 22 23345679999999999999999988655
Q ss_pred --------------------------------------hhhHHHHHHHHHHhhCCCeEEEEe
Q 022297 128 --------------------------------------PWVSKVWTSVEKHKKGDYTSIIHG 151 (299)
Q Consensus 128 --------------------------------------P~V~kv~~~v~~~~~~GY~IVIiG 151 (299)
||+.-+...+.++.++|.+|++=|
T Consensus 162 le~~~~~~n~~l~~~y~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~a~~~g~~VLfEG 223 (430)
T COG0104 162 LERLLEYKNFQLVKYYGAEAVDFEDILDEYYEYAERLKPYVTDVSVLLNDALDAGKRVLFEG 223 (430)
T ss_pred HHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHcCCeEEEEc
Confidence 999999999999999999999877
No 128
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=29.68 E-value=3.6e+02 Score=25.34 Aligned_cols=99 Identities=12% Similarity=0.051 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEE-EcCCCCCHHHHHHHH---h
Q 022297 42 AVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVV-LPAFGAAVEEMVTLN---N 117 (299)
Q Consensus 42 AV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VI-IRAHGvs~~v~~~l~---~ 117 (299)
+-.+|...++. +-+|+.+ =.|+..++.|.+.|+....+..+. .+.+..-|+|+ .-..+..+++.+.+. .
T Consensus 12 G~~la~~L~~~--g~~V~~~---dr~~~~~~~l~~~g~~~~~s~~~~--~~~~~~~dvIi~~vp~~~~~~v~~~l~~~l~ 84 (298)
T TIGR00872 12 GANIVRRLAKR--GHDCVGY---DHDQDAVKAMKEDRTTGVANLREL--SQRLSAPRVVWVMVPHGIVDAVLEELAPTLE 84 (298)
T ss_pred HHHHHHHHHHC--CCEEEEE---ECCHHHHHHHHHcCCcccCCHHHH--HhhcCCCCEEEEEcCchHHHHHHHHHHhhCC
Confidence 34455555543 3356555 368899999999987665432111 11122234443 223336677776664 3
Q ss_pred cCCeEEeCCChhhHHHHHHHHHHhhCCCeE
Q 022297 118 KNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 147 (299)
Q Consensus 118 kgl~VIDATCP~V~kv~~~v~~~~~~GY~I 147 (299)
.|-.|||++=.......+.++++.++|...
T Consensus 85 ~g~ivid~st~~~~~t~~~~~~~~~~g~~~ 114 (298)
T TIGR00872 85 KGDIVIDGGNSYYKDSLRRYKLLKEKGIHL 114 (298)
T ss_pred CCCEEEECCCCCcccHHHHHHHHHhcCCeE
Confidence 577899987666677888888888888653
No 129
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=29.65 E-value=4e+02 Score=25.15 Aligned_cols=92 Identities=12% Similarity=0.114 Sum_probs=57.3
Q ss_pred ccHHHHHHHHHHHHhhCC-CCceEEeeccc-cCHHHHHHHHhcCcEEecCCcc---c----------------ccccccc
Q 022297 37 WGVERAVQIAYEARKQFP-EEKIWITNEII-HNPTVNKRLEEMAVQNIPVEEG---K----------------KQFDVVN 95 (299)
Q Consensus 37 ~GVkRAV~~a~~~~~~~~-~~~VytlG~LI-HN~~Vv~~L~~~GV~~v~~~~~---~----------------~~~~ei~ 95 (299)
.+|+.-+..+.+++++++ ....|++|.++ ++|.+++++.+.|-.+-...-. . +.++++.
T Consensus 24 ~rv~~nt~riL~lL~~~gikATFFv~g~~~e~~p~lir~i~~~GhEIgsHg~sH~~l~~ls~ee~~~eI~~s~~~Le~it 103 (265)
T TIGR03006 24 CRVERNTDRILDLLDRHGVKATFFTLGWVAERYPELVRRIVAAGHELASHGYGHERVTTQTPEAFRADIRRSKALLEDLS 103 (265)
T ss_pred chHHHhHHHHHHHHHHcCCcEEEEEeccchhhCHHHHHHHHHcCCEeeeccccCcCchhCCHHHHHHHHHHHHHHHHHHh
Confidence 445444555555565542 23588999888 7899999999999776543111 0 0112222
Q ss_pred CCC-EEEEcCCCCC-----HHHHHHHHhcCCeEEeCCChh
Q 022297 96 KGD-VVVLPAFGAA-----VEEMVTLNNKNVQIVDTTCPW 129 (299)
Q Consensus 96 ~g~-~VIIRAHGvs-----~~v~~~l~~kgl~VIDATCP~ 129 (299)
|. ..-+||-+-+ +...+.|++.|+...=..||.
T Consensus 104 -G~~~~gfRaP~~s~~~~t~~a~~iL~e~Gy~YdsS~~p~ 142 (265)
T TIGR03006 104 -GQPVRGYRAPSFSIGKKNLWALDVLAEAGYRYSSSIYPV 142 (265)
T ss_pred -CCCceEEECCCCCCCCCcHHHHHHHHHCCCEEEEeeccC
Confidence 33 4568888632 445788889999876666675
No 130
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.55 E-value=4.5e+02 Score=25.98 Aligned_cols=89 Identities=10% Similarity=0.126 Sum_probs=53.0
Q ss_pred ccCHHHHHHHHh--cCcEEecCCccccccccccCCCEEEEcCCCCCHH--HHHHHHhcCCeEEe---C-----CChhh--
Q 022297 65 IHNPTVNKRLEE--MAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVE--EMVTLNNKNVQIVD---T-----TCPWV-- 130 (299)
Q Consensus 65 IHN~~Vv~~L~~--~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~--v~~~l~~kgl~VID---A-----TCP~V-- 130 (299)
-.++...+.|++ .|+.+.....+ .+.+.+-|.||++. |+|+. .+.+++++|+.|+. . .+|.|
T Consensus 38 ~~~~~~~~~l~~~~~g~~~~~~~~~---~~~~~~~d~vV~sp-~i~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~V 113 (448)
T PRK03803 38 REQPPGLDTLAREFPDVELRCGGFD---CELLVQASEIIISP-GLALDTPALRAAAAMGIEVIGDIELFAREAKAPVIAI 113 (448)
T ss_pred CCCchhHHHHHhhcCCcEEEeCCCC---hHHhcCCCEEEECC-CCCCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEE
Confidence 335545567887 49887643211 12334446555555 99863 67788889988874 0 12222
Q ss_pred -------HHHHHHHHHHhhCCCeEEEEecCCCcc
Q 022297 131 -------SKVWTSVEKHKKGDYTSIIHGKYSHEE 157 (299)
Q Consensus 131 -------~kv~~~v~~~~~~GY~IVIiGd~~HPE 157 (299)
+-..-++.-+...|+.+.+-|+-+.|-
T Consensus 114 TGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p~ 147 (448)
T PRK03803 114 TGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTPA 147 (448)
T ss_pred ECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHHH
Confidence 233444455667788888888766664
No 131
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=29.42 E-value=3.1e+02 Score=26.35 Aligned_cols=193 Identities=15% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeE
Q 022297 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 147 (299)
Q Consensus 68 ~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~I 147 (299)
+.+.+-|+..|+.+.-...+- +.+.+|+ +|++..|=...+. .++.--+.++---|-.-++.++.+....+.|+.+
T Consensus 47 ~~a~~i~~~l~~~v~~~~~dG---~~v~~g~-~i~~i~G~~~~ll-~~Er~~ln~l~~~SGIAT~T~~~v~~~~~~~~~~ 121 (278)
T PRK08385 47 EEAKALFEHFGVKVEVRKRDG---EEVKAGE-VILELKGNARAIL-LVERTALNIIGRMSGIATETRKLVELVKAVNPKV 121 (278)
T ss_pred HHHHHHHHHcCCEEEEEcCCC---CEecCCC-EEEEEEECHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Q ss_pred EEEecCC-CcceeeecccC--------------CeEEEEcChhhHHhhhhhhccCccCCCCccHHHHHHHHHHhhcCCCC
Q 022297 148 IIHGKYS-HEETVATASFA--------------GKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFD 212 (299)
Q Consensus 148 VIiGd~~-HPEV~Gi~g~~--------------~~~~vv~~~~e~~~l~~~~~~~q~~~tt~~~e~f~~~~~~~~~~~~d 212 (299)
.|.+-+. ||-.+.+.-|+ +...|..|--.+..+ .+-+.+++...
T Consensus 122 ~i~~TRKt~Pg~R~l~k~Av~~GGg~~HR~gLsd~vLikdnHi~~~~i----------------~~av~~~r~~~----- 180 (278)
T PRK08385 122 RVAGTRKTLPGLRLLDKKAIIIGGGEPHRFSLSDAILIKDNHLALVPL----------------EEAIRRAKEFS----- 180 (278)
T ss_pred EEEEeCCCChhhhHHHHHHHHhcCCcccCCCCcccEEEccCHHHHHHH----------------HHHHHHHHHhC-----
Q ss_pred CCCCCceeEEEEccccChHHHHHHHHH-HHHHhhhccCccchhhhHH-hhc----CCceEEEEEcCCCCCcchhHhhhhc
Q 022297 213 PDVDLVKVGIANQTTMLKGETEEIGKL-VEKTMMRKFGVENMQCIRW-LRK----RSILSWLLVGGTRAIPHTFKRLQKT 286 (299)
Q Consensus 213 ~~~~~~kv~Iv~QTT~~~~~~~~i~~~-l~~~~~~~~g~~~~~ei~~-l~~----~~vd~~lvvG~~~s~~~~~~~~~~~ 286 (299)
+..++-|=.. +.++..+.+++ .+-.+.+.+.|+..+++.+ +.+ +++ .+.+-||-|-. |...+-+|
T Consensus 181 ---~~~kIeVEv~---~leea~~a~~agaDiI~LDn~~~e~l~~~v~~l~~~~~~~~~-~leaSGGI~~~--ni~~yA~t 251 (278)
T PRK08385 181 ---VYKVVEVEVE---SLEDALKAAKAGADIIMLDNMTPEEIREVIEALKREGLRERV-KIEVSGGITPE--NIEEYAKL 251 (278)
T ss_pred ---CCCcEEEEeC---CHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHHHhcCcCCCE-EEEEECCCCHH--HHHHHHHc
Q ss_pred -cccCCcccc
Q 022297 287 -VEFPHTGSI 295 (299)
Q Consensus 287 -~~~~~~~~~ 295 (299)
|.+=-+|++
T Consensus 252 GvD~Is~gal 261 (278)
T PRK08385 252 DVDVISLGAL 261 (278)
T ss_pred CCCEEEeChh
No 132
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=29.29 E-value=3.4e+02 Score=23.41 Aligned_cols=40 Identities=18% Similarity=0.102 Sum_probs=27.9
Q ss_pred cCCeEEeCCChhhH--HHHHHHHHHhhCCCeEEEEecCCCcc
Q 022297 118 KNVQIVDTTCPWVS--KVWTSVEKHKKGDYTSIIHGKYSHEE 157 (299)
Q Consensus 118 kgl~VIDATCP~V~--kv~~~v~~~~~~GY~IVIiGd~~HPE 157 (299)
..+-+++++|||+. -+.+.++.+.+.++..++--.+.++.
T Consensus 99 d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~~ 140 (223)
T cd02513 99 DIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHRF 140 (223)
T ss_pred CEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecCcC
Confidence 35778999999996 55667777766677766665554443
No 133
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.01 E-value=2.3e+02 Score=22.10 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCcEEecC--Cccc--cc--c-ccccCCCEEEEc----CCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHH
Q 022297 68 PTVNKRLEEMAVQNIPV--EEGK--KQ--F-DVVNKGDVVVLP----AFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTS 136 (299)
Q Consensus 68 ~~Vv~~L~~~GV~~v~~--~~~~--~~--~-~ei~~g~~VIIR----AHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~ 136 (299)
++..+.|++.|..++-. .+.. .. + ..+.+-|.||+. +|+....+.+.+++.|+.++=+-..=+..+.+.
T Consensus 13 ~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l~~~ 92 (97)
T PF10087_consen 13 RRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSLERA 92 (97)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHHHHH
Confidence 45566778888876654 1111 11 1 233445666554 799999999999999999986665555555555
Q ss_pred HHH
Q 022297 137 VEK 139 (299)
Q Consensus 137 v~~ 139 (299)
..+
T Consensus 93 l~~ 95 (97)
T PF10087_consen 93 LER 95 (97)
T ss_pred HHh
Confidence 444
No 134
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=28.52 E-value=2.8e+02 Score=28.23 Aligned_cols=108 Identities=12% Similarity=0.106 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhhCCC-CceEEe--eccccCH----HHHHHHHhc--CcEEecCCccc---cccccccC-C-CEEEEcC
Q 022297 39 VERAVQIAYEARKQFPE-EKIWIT--NEIIHNP----TVNKRLEEM--AVQNIPVEEGK---KQFDVVNK-G-DVVVLPA 104 (299)
Q Consensus 39 VkRAV~~a~~~~~~~~~-~~Vytl--G~LIHN~----~Vv~~L~~~--GV~~v~~~~~~---~~~~ei~~-g-~~VIIRA 104 (299)
.+.+++.+.+.....++ +.|..- |+--.|+ ..+..+++. |+.+.=+..+. +.++++.+ | |.|.|.-
T Consensus 62 pee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~gvd~V~isl 141 (442)
T TIGR01290 62 PEQALRKARQVAAEIPQLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDLGVGHVTITI 141 (442)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCCCCeEEEec
Confidence 35677777666543221 223333 5555554 244555655 66543221121 22334432 2 5789999
Q ss_pred CCCCHHHHHHH------HhcCCeEEeCCChhhHHHHHHHHHHhhCCCe
Q 022297 105 FGAAVEEMVTL------NNKNVQIVDTTCPWVSKVWTSVEKHKKGDYT 146 (299)
Q Consensus 105 HGvs~~v~~~l------~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~ 146 (299)
+++.|++++++ +.+.++-.++.-.+..++.+-++.+.+.|..
T Consensus 142 ka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~ 189 (442)
T TIGR01290 142 NAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGIL 189 (442)
T ss_pred cCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCe
Confidence 99999999876 2333444555555566666777777777765
No 135
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=28.48 E-value=1.5e+02 Score=26.89 Aligned_cols=59 Identities=12% Similarity=0.134 Sum_probs=36.9
Q ss_pred cCHHHHHHHHhcCcEEec-CCcc----cccc-ccccCCCEEEEc--CCCCCHHHHHHHHhcCCeEEe
Q 022297 66 HNPTVNKRLEEMAVQNIP-VEEG----KKQF-DVVNKGDVVVLP--AFGAAVEEMVTLNNKNVQIVD 124 (299)
Q Consensus 66 HN~~Vv~~L~~~GV~~v~-~~~~----~~~~-~ei~~g~~VIIR--AHGvs~~v~~~l~~kgl~VID 124 (299)
+.+.+.+.|+++|+.+.- +.++ ..+. .++.+-|.|++| .|+........++..|+.++.
T Consensus 11 ~~~~l~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~le~~g~~~~n 77 (280)
T TIGR02144 11 DEKMLIEELEKLGLPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRALYSARLLEALGVPVIN 77 (280)
T ss_pred HHHHHHHHHHHcCCceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHHHHHHHHHHCCCcEEC
Confidence 467888999999988642 0000 0000 122234678888 666556666677888999886
No 136
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=28.42 E-value=2.5e+02 Score=26.18 Aligned_cols=43 Identities=14% Similarity=0.010 Sum_probs=35.4
Q ss_pred CHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEEe
Q 022297 108 AVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHG 151 (299)
Q Consensus 108 s~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIiG 151 (299)
+.+.++.+++.+. +.=+.||-.....+..+++.++|+.|+++.
T Consensus 43 ~~~~y~~~~~~~~-~p~TS~ps~~~~~~~~~~l~~~~~~vi~i~ 85 (275)
T TIGR00762 43 PEEFYEKLKESKE-LPKTSQPSPGEFLELYEKLLEEGDEVLSIH 85 (275)
T ss_pred HHHHHHHHHhcCC-CCCcCCCCHHHHHHHHHHHHhCCCeEEEEE
Confidence 4566777765443 556999999999999999999999999986
No 137
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=28.39 E-value=1.6e+02 Score=28.74 Aligned_cols=86 Identities=14% Similarity=0.299 Sum_probs=52.5
Q ss_pred eCCCCCcccH--------HHH----HHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccC-
Q 022297 30 AESYGFCWGV--------ERA----VQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNK- 96 (299)
Q Consensus 30 A~~~GFC~GV--------kRA----V~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~- 96 (299)
+.+.-||+|- ++| +++..+... .+=.-..|||++ |+|--..|++.|+..-+.. +|.-.+
T Consensus 132 ~GSTRFCmGaAWRD~~GRk~~fk~IlE~ikevr~-MgmEvCvTLGMv--~~qQAkeLKdAGLTAYNHN-----lDTSREy 203 (380)
T KOG2900|consen 132 NGSTRFCMGAAWRDMKGRKSAFKRILEMIKEVRD-MGMEVCVTLGMV--DQQQAKELKDAGLTAYNHN-----LDTSREY 203 (380)
T ss_pred cCCceeecchhhhhhccchhHHHHHHHHHHHHHc-CCceeeeeeccc--cHHHHHHHHhccceecccC-----ccchhhh
Confidence 3444577764 344 444444332 212346799987 7888899999999877642 222111
Q ss_pred -CCEEEEcCCCCCHHHHHHHHhcCCeEE
Q 022297 97 -GDVVVLPAFGAAVEEMVTLNNKNVQIV 123 (299)
Q Consensus 97 -g~~VIIRAHGvs~~v~~~l~~kgl~VI 123 (299)
..++--|+.---.+..+.+++.|+++-
T Consensus 204 YskvItTRtYDdRL~Ti~nvr~aGikvC 231 (380)
T KOG2900|consen 204 YSKVITTRTYDDRLQTIKNVREAGIKVC 231 (380)
T ss_pred hcccceecchHHHHHHHHHHHHhcceec
Confidence 223446666666677788888888873
No 138
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=28.35 E-value=1.1e+02 Score=28.37 Aligned_cols=62 Identities=11% Similarity=0.105 Sum_probs=43.5
Q ss_pred EEcCCCCCH--------HHHHHHHhcCCeEEeCCChh--------------hHHHHHHHHHHhhCCCeEEEEecCCCcce
Q 022297 101 VLPAFGAAV--------EEMVTLNNKNVQIVDTTCPW--------------VSKVWTSVEKHKKGDYTSIIHGKYSHEET 158 (299)
Q Consensus 101 IIRAHGvs~--------~v~~~l~~kgl~VIDATCP~--------------V~kv~~~v~~~~~~GY~IVIiGd~~HPEV 158 (299)
+||-|.|+| ++.+.|.+.|+...=+.=|. -.+..+..+.+..+|+.|+++| ..|...
T Consensus 3 lirleDVsP~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~lHG-YtHq~~ 81 (243)
T PF10096_consen 3 LIRLEDVSPFSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVLHG-YTHQYG 81 (243)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEEEe-cceecC
Confidence 577777777 56666777777654344443 3577778888899999999999 667664
Q ss_pred eeecc
Q 022297 159 VATAS 163 (299)
Q Consensus 159 ~Gi~g 163 (299)
.+..|
T Consensus 82 ~~~sg 86 (243)
T PF10096_consen 82 NSVSG 86 (243)
T ss_pred CCccc
Confidence 44444
No 139
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=28.06 E-value=3.7e+02 Score=27.61 Aligned_cols=136 Identities=13% Similarity=0.030 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCeEEEEecCCCcceeeeccc----CCeEEEEcChhhHHhh---hh-hhccCccCCCCccHHHHHHHHHH
Q 022297 134 WTSVEKHKKGDYTSIIHGKYSHEETVATASF----AGKYIIVKNMKEAEYV---CD-YILGGELNGSSSTKEAFLEKFKK 205 (299)
Q Consensus 134 ~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~----~~~~~vv~~~~e~~~l---~~-~~~~~q~~~tt~~~e~f~~~~~~ 205 (299)
...|..+.+.||.|.++ +++...+..+... ........+++|+-.- ++ .++.-. .++..++.++.+..
T Consensus 14 ~~lA~nL~~~G~~V~v~-dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~---~~~~v~~vi~~l~~ 89 (470)
T PTZ00142 14 QNLALNIASRGFKISVY-NRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIK---AGEAVDETIDNLLP 89 (470)
T ss_pred HHHHHHHHHCCCeEEEE-eCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeC---ChHHHHHHHHHHHh
Q ss_pred hhcCCCCCCCCCceeEEEEccccChHHHHHHHHHHHHHhhhccCccchhhhHHhhcCCceEEEEEcCCCCCcchhHhhhh
Q 022297 206 AVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIRWLRKRSILSWLLVGGTRAIPHTFKRLQK 285 (299)
Q Consensus 206 ~~~~~~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~~~ei~~l~~~~vd~~lvvG~~~s~~~~~~~~~~ 285 (299)
.+.+|- .|+.-+|-...++.+..+.+.+....+.+.-.---..-.+.+. .|.+|| +...|+|++.
T Consensus 90 ~L~~g~---------iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~---~lm~GG---~~~a~~~~~p 154 (470)
T PTZ00142 90 LLEKGD---------IIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGP---SLMPGG---NKEAYDHVKD 154 (470)
T ss_pred hCCCCC---------EEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCC---EEEEeC---CHHHHHHHHH
Q ss_pred ccc
Q 022297 286 TVE 288 (299)
Q Consensus 286 ~~~ 288 (299)
.++
T Consensus 155 iL~ 157 (470)
T PTZ00142 155 ILE 157 (470)
T ss_pred HHH
No 140
>cd03108 AdSS Adenylosuccinate synthetase (AdSS) catalyzes the first step in the de novo biosynthesis of AMP. IMP and L-aspartate are conjugated in a two-step reaction accompanied by the hydrolysis of GTP to GDP in the presence of Mg2+. In the first step, the r-phosphate group of GTP is transferred to the 6-oxygen atom of IMP. An aspartate then displaces this 6-phosphate group to form the product adenylosuccinate. Because of its critical role in purine biosynthesis, AdSS is a target of antibiotics, herbicides and antitumor drugs.
Probab=27.44 E-value=97 Score=31.11 Aligned_cols=42 Identities=7% Similarity=0.070 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEEe
Q 022297 104 AFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHG 151 (299)
Q Consensus 104 AHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIiG 151 (299)
--|+.|...+++..+|+++-|. -+.....+..++|.+|++=|
T Consensus 128 ~rGIGpay~dk~~R~gir~~Dl------d~~~~l~~a~~~gk~vLfEG 169 (363)
T cd03108 128 KRGIGPAYEDKAARRGIRVGDL------DTSYLINEAIQAGKKVLFEG 169 (363)
T ss_pred CCcchHHHHHhhhccCCeEEeC------cHHHHHHHHHHcCCcEEEEc
Confidence 3478899999999999999997 33455667778899998866
No 141
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=27.11 E-value=69 Score=29.60 Aligned_cols=66 Identities=14% Similarity=0.082 Sum_probs=46.1
Q ss_pred ccccCCCEEEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHh-hCCCeEEEEecCCCcceeeeccc
Q 022297 92 DVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHK-KGDYTSIIHGKYSHEETVATASF 164 (299)
Q Consensus 92 ~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~-~~GY~IVIiGd~~HPEV~Gi~g~ 164 (299)
+-+++|++|+|-+==......+.|.+++++|| ++-...+..+. ..+.+++++|-.-+|+-.++.|-
T Consensus 89 ~lI~~gd~Ifld~GtT~~~l~~~L~~~~ltVv-------TNs~~ia~~l~~~~~~~vil~GG~~~~~~~~~~G~ 155 (240)
T PRK10411 89 AWIEEGMVIALDASSTCWYLARQLPDINIQVF-------TNSHPICQELGKRERIQLISSGGTLERKYGCYVNP 155 (240)
T ss_pred HhCCCCCEEEEcCcHHHHHHHHhhCCCCeEEE-------eCCHHHHHHHhcCCCCEEEEECCEEeCCCCceECH
Confidence 34567997877665555566777777778887 34445555565 46789999998888887777663
No 142
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=27.09 E-value=5.4e+02 Score=24.33 Aligned_cols=72 Identities=21% Similarity=0.305 Sum_probs=37.8
Q ss_pred hHHHHHHhcCceeeeeceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEe--ecccc--------CHHHHHHHHhc
Q 022297 8 DIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWIT--NEIIH--------NPTVNKRLEEM 77 (299)
Q Consensus 8 ~~~~~~~~~~~~~~~~~M~IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~Vytl--G~LIH--------N~~Vv~~L~~~ 77 (299)
+|++.+++. .+.|.-+|.+.....+-...++..+++....+..++-.+..+ +++.| .+.+.++|++.
T Consensus 40 eI~~~~~~~---~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeA 116 (309)
T TIGR00423 40 EILEKVKEA---VAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKA 116 (309)
T ss_pred HHHHHHHHH---HHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 455555532 122445566654444555667777776666554332223222 22322 36777888877
Q ss_pred CcEEe
Q 022297 78 AVQNI 82 (299)
Q Consensus 78 GV~~v 82 (299)
|+..+
T Consensus 117 Gl~~i 121 (309)
T TIGR00423 117 GLDSM 121 (309)
T ss_pred CCCcC
Confidence 76544
No 143
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=27.00 E-value=5.9e+02 Score=24.68 Aligned_cols=127 Identities=18% Similarity=0.122 Sum_probs=77.3
Q ss_pred chHHHHHHhc--CceeeeeceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeeccccC--HHHHHHHHhcCcEEe
Q 022297 7 SDIIKKLKEN--GFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHN--PTVNKRLEEMAVQNI 82 (299)
Q Consensus 7 s~~~~~~~~~--~~~~~~~~M~IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN--~~Vv~~L~~~GV~~v 82 (299)
..+++-+.++ |+....|-++.... ..++----+|.+..|-.+..+. +-+|.+--..--+ .++++-|++.|+..-
T Consensus 107 ~~~i~Ei~~GidgT~ikaG~Ik~~~~-~~~it~~E~k~lrAaa~A~~~T-G~pI~~H~~~g~~~~~e~~~il~e~Gv~~~ 184 (308)
T PF02126_consen 107 DLFIREIEEGIDGTGIKAGIIKEIGS-SNPITPLEEKVLRAAARAHKET-GAPISTHTGRGTRMGLEQLDILEEEGVDPS 184 (308)
T ss_dssp HHHHHHHHT-STTSSB-ESEEEEEEB-TTBCEHHHHHHHHHHHHHHHHH-T-EEEEEESTTGTCHHHHHHHHHHTT--GG
T ss_pred HHHHHHHHhcCCCCccchhheeEeec-cCCCCHHHHHHHHHHHHHHHHh-CCeEEEcCCCCCcCHHHHHHHHHHcCCChh
Confidence 3455566665 67788888888644 4777778888888876665543 3566554333332 578889999998421
Q ss_pred cCCccccccccccCCCEEEEcCC---CCCHHHHHHHHhcCCeE-EeCC--------------ChhhHHHHHHHHHHhhCC
Q 022297 83 PVEEGKKQFDVVNKGDVVVLPAF---GAAVEEMVTLNNKNVQI-VDTT--------------CPWVSKVWTSVEKHKKGD 144 (299)
Q Consensus 83 ~~~~~~~~~~ei~~g~~VIIRAH---Gvs~~v~~~l~~kgl~V-IDAT--------------CP~V~kv~~~v~~~~~~G 144 (299)
.||| +| ....+.+.++.++|+.| .|.- +|--..--+.+..+.++|
T Consensus 185 ----------------rvvi-gH~D~~~D~~y~~~la~~G~~l~~D~~g~~~~g~~~~~~~~~~~d~~ri~~l~~L~~~G 247 (308)
T PF02126_consen 185 ----------------RVVI-GHMDRNPDLDYHRELADRGVYLEFDTIGREFSGKDKNPRVGYPPDEERIELLKELIEEG 247 (308)
T ss_dssp ----------------GEEE-TSGGGST-HHHHHHHHHTT-EEEETTTT-B-TTTTTCHSCTTS-HHHHHHHHHHHHHTT
T ss_pred ----------------HeEE-eCCCCCCCHHHHHHHHhcCCEEEecCCcccccCcccCccCCCCCHHHHHHHHHHHHHcC
Confidence 2333 23 23356778888999988 8877 444444446778888999
Q ss_pred C--eEEEEec
Q 022297 145 Y--TSIIHGK 152 (299)
Q Consensus 145 Y--~IVIiGd 152 (299)
| +|++=+|
T Consensus 248 y~~qIlLS~D 257 (308)
T PF02126_consen 248 YADQILLSHD 257 (308)
T ss_dssp TGGGEEE-HH
T ss_pred CcCcEEEecc
Confidence 8 4666554
No 144
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=26.78 E-value=2.5e+02 Score=25.96 Aligned_cols=84 Identities=13% Similarity=0.152 Sum_probs=58.9
Q ss_pred eEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccCCeEEEEcChhhHHhhhhhhccCccCCCCccHHHHH
Q 022297 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFL 200 (299)
Q Consensus 121 ~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~~~~~vv~~~~e~~~l~~~~~~~q~~~tt~~~e~f~ 200 (299)
-|||.|=|-.. ...+....+.|..++ .|+.||. .++++.+.
T Consensus 63 vVid~t~p~~~--~~~~~~al~~G~~vv----------igttG~s--------~~~~~~l~------------------- 103 (257)
T PRK00048 63 VLIDFTTPEAT--LENLEFALEHGKPLV----------IGTTGFT--------EEQLAELE------------------- 103 (257)
T ss_pred EEEECCCHHHH--HHHHHHHHHcCCCEE----------EECCCCC--------HHHHHHHH-------------------
Confidence 46888877665 667788888898877 4467776 34554442
Q ss_pred HHHHHhhcCCCCCCCCCceeEEEEccccChHHHHHHHHHHHHHhhhccCccchhhh
Q 022297 201 EKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCI 256 (299)
Q Consensus 201 ~~~~~~~~~~~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~~~ei 256 (299)
. .+ ....+.+.++..+....+.++++.+...+.. |..|..+.+
T Consensus 104 ----~-aa-------~~~~v~~s~n~s~g~~~~~~l~~~aa~~l~~-~d~ei~E~H 146 (257)
T PRK00048 104 ----E-AA-------KKIPVVIAPNFSIGVNLLMKLAEKAAKYLGD-YDIEIIEAH 146 (257)
T ss_pred ----H-Hh-------cCCCEEEECcchHHHHHHHHHHHHHHHhcCC-CCEEEEEcc
Confidence 1 00 1146889999999999999999888887765 777775555
No 145
>COG1416 Uncharacterized conserved protein [Function unknown]
Probab=26.62 E-value=1.3e+02 Score=25.44 Aligned_cols=73 Identities=14% Similarity=0.083 Sum_probs=45.2
Q ss_pred cccHHHHHHHHHHHHhhCCCC--ceEEeeccc------cCHH--HHHHHHhcCcEEecCCccccccccccCCCEEEEcCC
Q 022297 36 CWGVERAVQIAYEARKQFPEE--KIWITNEII------HNPT--VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAF 105 (299)
Q Consensus 36 C~GVkRAV~~a~~~~~~~~~~--~VytlG~LI------HN~~--Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAH 105 (299)
--.+..+|.-+...++..+.. .|..+|+=| +|+- .+..|.++||.|.- -..+ +|||
T Consensus 13 ~~k~~~~l~Nl~Nll~~~p~~~IeVV~~g~ai~~l~~~~~~~~~~~~~L~~~GV~~~a-----------C~nS---l~a~ 78 (112)
T COG1416 13 ESKVNMVLGNLTNLLEDDPSVEIEVVAHGPAIAFLSEKANIAAVRVAELAQQGVEFVA-----------CGNS---LRAH 78 (112)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEeCchhHHhhhhccchhHHHHHHHHCCCEEEE-----------ecch---HHHc
Confidence 344555555555555543322 244555544 3444 67889999998873 2344 7899
Q ss_pred CCCHHHHHHHHhcCCeEEeCC
Q 022297 106 GAAVEEMVTLNNKNVQIVDTT 126 (299)
Q Consensus 106 Gvs~~v~~~l~~kgl~VIDAT 126 (299)
|++.+.+ --|+++|+|-
T Consensus 79 ~i~~d~L----~~gv~vVpaG 95 (112)
T COG1416 79 DIDEDDL----LDGVTVVPAG 95 (112)
T ss_pred CCCHHHh----cCCcEEEcch
Confidence 9986543 3488999886
No 146
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=26.60 E-value=4.1e+02 Score=22.75 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=14.8
Q ss_pred ccCCCE-EEEcCCCCCHHHHHHH
Q 022297 94 VNKGDV-VVLPAFGAAVEEMVTL 115 (299)
Q Consensus 94 i~~g~~-VIIRAHGvs~~v~~~l 115 (299)
+.++|. ++|+--|-++++.+.+
T Consensus 73 ~~~~D~vI~iS~sG~t~~~i~~~ 95 (179)
T cd05005 73 IGPGDLLIAISGSGETSSVVNAA 95 (179)
T ss_pred CCCCCEEEEEcCCCCcHHHHHHH
Confidence 345665 5688888888876544
No 147
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=26.23 E-value=5.4e+02 Score=24.02 Aligned_cols=75 Identities=9% Similarity=0.090 Sum_probs=52.1
Q ss_pred ccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhh
Q 022297 63 EIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKK 142 (299)
Q Consensus 63 ~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~ 142 (299)
++-|-...+++|++.|+..+.- ++-+| ..++--+.+|.+.+.+++ .+ .+|+-. .|.+-.+.+..+.+
T Consensus 23 d~~~l~~el~~l~~~g~d~lHi--------DVMDG--~FVPNitfGp~~i~~i~~-~~-~~DvHL-Mv~~P~~~i~~~~~ 89 (228)
T PRK08091 23 NWLKFNETLTTLSENQLRLLHF--------DIADG--QFSPFFTVGAIAIKQFPT-HC-FKDVHL-MVRDQFEVAKACVA 89 (228)
T ss_pred CHHHHHHHHHHHHHCCCCEEEE--------eccCC--CcCCccccCHHHHHHhCC-CC-CEEEEe-ccCCHHHHHHHHHH
Confidence 3445567889999999887751 23345 466777789999999963 22 233332 35678889999999
Q ss_pred CCCeEEEE
Q 022297 143 GDYTSIIH 150 (299)
Q Consensus 143 ~GY~IVIi 150 (299)
.|-.+|.+
T Consensus 90 aGad~It~ 97 (228)
T PRK08091 90 AGADIVTL 97 (228)
T ss_pred hCCCEEEE
Confidence 99887776
No 148
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=26.19 E-value=1e+02 Score=24.23 Aligned_cols=43 Identities=12% Similarity=0.127 Sum_probs=30.9
Q ss_pred cCCCE-EEEcCCCCCHHHH---HHHHhcCCeEEeCCChhhHHHHHHH
Q 022297 95 NKGDV-VVLPAFGAAVEEM---VTLNNKNVQIVDTTCPWVSKVWTSV 137 (299)
Q Consensus 95 ~~g~~-VIIRAHGvs~~v~---~~l~~kgl~VIDATCP~V~kv~~~v 137 (299)
.++|. ++|+..|-+++.. +.|+++|..+|--||.--..+.+.+
T Consensus 52 ~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~a 98 (131)
T PF01380_consen 52 DPDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSESPLARLA 98 (131)
T ss_dssp STTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHS
T ss_pred cccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhC
Confidence 34554 6788899998764 4667789999888887766665443
No 149
>PRK10329 glutaredoxin-like protein; Provisional
Probab=25.49 E-value=3.1e+02 Score=20.92 Aligned_cols=71 Identities=17% Similarity=0.223 Sum_probs=47.7
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcC
Q 022297 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 104 (299)
Q Consensus 25 M~IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRA 104 (299)
++++-....+||-.++++++. . +--|..=++-.+|...+.|+..|...+.- +--|+..+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~--gI~~~~idi~~~~~~~~~~~~~g~~~vPv---------v~i~~~~~~-- 62 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------R--GFDFEMINVDRVPEAAETLRAQGFRQLPV---------VIAGDLSWS-- 62 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------C--CCceEEEECCCCHHHHHHHHHcCCCCcCE---------EEECCEEEe--
Confidence 456667889999999998742 1 23355667777898888888877765532 112343333
Q ss_pred CCCCHHHHHHHH
Q 022297 105 FGAAVEEMVTLN 116 (299)
Q Consensus 105 HGvs~~v~~~l~ 116 (299)
|-.++-+++|.
T Consensus 63 -Gf~~~~l~~~~ 73 (81)
T PRK10329 63 -GFRPDMINRLH 73 (81)
T ss_pred -cCCHHHHHHHH
Confidence 88888887774
No 150
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=25.31 E-value=22 Score=33.75 Aligned_cols=32 Identities=34% Similarity=0.750 Sum_probs=20.4
Q ss_pred chHHHHHHhcCceeeeeceEEEEeCCCCCcccHHHHHHHH
Q 022297 7 SDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIA 46 (299)
Q Consensus 7 s~~~~~~~~~~~~~~~~~M~IilA~~~GFC~GVkRAV~~a 46 (299)
+.+++-||..|-.-..| -.|||||-+++|+.-
T Consensus 107 ~~v~k~lk~~g~~kkIG--------v~GfCwGak~vv~~~ 138 (242)
T KOG3043|consen 107 TAVVKWLKNHGDSKKIG--------VVGFCWGAKVVVTLS 138 (242)
T ss_pred HHHHHHHHHcCCcceee--------EEEEeecceEEEEee
Confidence 34566666444333333 369999999988764
No 151
>PRK14057 epimerase; Provisional
Probab=25.02 E-value=6.1e+02 Score=24.19 Aligned_cols=76 Identities=18% Similarity=0.185 Sum_probs=52.5
Q ss_pred eccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHh
Q 022297 62 NEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHK 141 (299)
Q Consensus 62 G~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~ 141 (299)
.++-|-...+++|++.|+..+.= ++-+| ..++--..+|++.+.+++ . ..+|.- =.|.+-.+.++.+.
T Consensus 29 aD~~~L~~el~~l~~~g~d~lHi--------DVMDG--~FVPNitfGp~~i~~i~~-~-~p~DvH-LMV~~P~~~i~~~~ 95 (254)
T PRK14057 29 GQWIALHRYLQQLEALNQPLLHL--------DLMDG--QFCPQFTVGPWAVGQLPQ-T-FIKDVH-LMVADQWTAAQACV 95 (254)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEE--------eccCC--ccCCccccCHHHHHHhcc-C-CCeeEE-eeeCCHHHHHHHHH
Confidence 34456678889999999888751 23345 567777889999999954 1 112221 13567888999999
Q ss_pred hCCCeEEEE
Q 022297 142 KGDYTSIIH 150 (299)
Q Consensus 142 ~~GY~IVIi 150 (299)
+.|-.+|.+
T Consensus 96 ~aGad~It~ 104 (254)
T PRK14057 96 KAGAHCITL 104 (254)
T ss_pred HhCCCEEEE
Confidence 988776666
No 152
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=25.02 E-value=2.9e+02 Score=23.51 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=19.9
Q ss_pred HHhhcCCceEEEEEcCCCCCcchhHhhhh
Q 022297 257 RWLRKRSILSWLLVGGTRAIPHTFKRLQK 285 (299)
Q Consensus 257 ~~l~~~~vd~~lvvG~~~s~~~~~~~~~~ 285 (299)
+++.+..+|.+++.+...++...+++|+.
T Consensus 49 ~~~~~~~~d~ii~~~~~~~~~~~~~~l~~ 77 (264)
T cd01537 49 ENLIARGVDGIIIAPSDLTAPTIVKLARK 77 (264)
T ss_pred HHHHHcCCCEEEEecCCCcchhHHHHhhh
Confidence 46667789999888766666444667654
No 153
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=24.79 E-value=1.9e+02 Score=29.77 Aligned_cols=68 Identities=12% Similarity=0.194 Sum_probs=47.9
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCC--eEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccCC-eEEEEc
Q 022297 97 GDVVVLPAFGAAVEEMVTLNNKNV--QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVK 172 (299)
Q Consensus 97 g~~VIIRAHGvs~~v~~~l~~kgl--~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~~-~~~vv~ 172 (299)
+.+||+-.--+...+.+.|+++|. .+||.- .+.++++.+.|+. ++.||..+||+---.|-.. +..++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d-------~~~~~~~~~~g~~-~i~GD~~~~~~L~~a~i~~a~~viv~ 488 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETS-------RTRVDELRERGIR-AVLGNAANEEIMQLAHLDCARWLLLT 488 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECC-------HHHHHHHHHCCCe-EEEcCCCCHHHHHhcCccccCEEEEE
Confidence 557889888899999999998875 457754 3445666677876 6799999999864444321 344443
No 154
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=24.58 E-value=71 Score=28.42 Aligned_cols=44 Identities=9% Similarity=0.086 Sum_probs=30.8
Q ss_pred hcCCeEEeCCChhhHH--HHHHHHHHhhCCCeEEEE-ecCCCcceee
Q 022297 117 NKNVQIVDTTCPWVSK--VWTSVEKHKKGDYTSIIH-GKYSHEETVA 160 (299)
Q Consensus 117 ~kgl~VIDATCP~V~k--v~~~v~~~~~~GY~IVIi-Gd~~HPEV~G 160 (299)
..++-++++.+||+.. +.+.+..+.+.++.+++. |.++||=..|
T Consensus 88 ~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~g~Pv~~~ 134 (233)
T cd02518 88 ADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYTSNTLPRTYPDGLD 134 (233)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEEecCCCCCCCCceE
Confidence 3567889999999984 555666666666666664 4568887554
No 155
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=24.53 E-value=95 Score=26.66 Aligned_cols=73 Identities=11% Similarity=0.126 Sum_probs=49.6
Q ss_pred HhcCcEEecCCccccccccccCCCEEEEcCCCCC-HHHHHHHHh--cCCeEEeCCChhh--HHHHHHHHHHhhCCCeE
Q 022297 75 EEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAA-VEEMVTLNN--KNVQIVDTTCPWV--SKVWTSVEKHKKGDYTS 147 (299)
Q Consensus 75 ~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs-~~v~~~l~~--kgl~VIDATCP~V--~kv~~~v~~~~~~GY~I 147 (299)
+..+|.+|+..++...+..+-..+++++..||+. .+..+.+++ +.-.||=-|=|.- .++.+...++...-+.+
T Consensus 8 ~~~~vIVVEGK~D~~~l~~~~~~~~i~~~g~~i~~~~~ie~i~~~~~~k~VIILTD~D~~Ge~Irk~l~~~l~~~~~~ 85 (127)
T COG1658 8 ELKEVIVVEGKDDTASLKRLGDAGVIITNGSAINSLETIELIKKAQKYKGVIILTDPDRKGERIRKKLKEYLPGAKGA 85 (127)
T ss_pred hcCceEEEeCCcHHHHHHHhcCCceEEEcCCccchHHHHHHHHHhhccCCEEEEeCCCcchHHHHHHHHHHhcccccc
Confidence 3368999998766656666666668999999998 777777777 5555555565553 46666666665553433
No 156
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=24.43 E-value=2e+02 Score=25.66 Aligned_cols=69 Identities=17% Similarity=0.163 Sum_probs=45.9
Q ss_pred ceeEEEEccccChHHHHHHHHHHHHHhhhccCccchh--------hhHHhhcCCceEEEEEcCCCCCc--chhHhhhhc
Q 022297 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQ--------CIRWLRKRSILSWLLVGGTRAIP--HTFKRLQKT 286 (299)
Q Consensus 218 ~kv~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~~~--------ei~~l~~~~vd~~lvvG~~~s~~--~~~~~~~~~ 286 (299)
.++++++--|++.+-++++..+.+......+.+.... .++++..+..|++||=---+|.+ ....+|++.
T Consensus 30 ~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~ 108 (196)
T PF00448_consen 30 KKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKL 108 (196)
T ss_dssp --EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHH
T ss_pred ccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHH
Confidence 6899999999999999999988888887766544321 22466677899998854434432 234455543
No 157
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=24.40 E-value=3.8e+02 Score=26.44 Aligned_cols=64 Identities=13% Similarity=0.046 Sum_probs=34.5
Q ss_pred EEEEccccChHHHHHHHHHHHHH------h---hhccCccchhhhHHhhcCCceEEEEEcCCCCCcchhHhhhhcc
Q 022297 221 GIANQTTMLKGETEEIGKLVEKT------M---MRKFGVENMQCIRWLRKRSILSWLLVGGTRAIPHTFKRLQKTV 287 (299)
Q Consensus 221 ~Iv~QTT~~~~~~~~i~~~l~~~------~---~~~~g~~~~~ei~~l~~~~vd~~lvvG~~~s~~~~~~~~~~~~ 287 (299)
.++.-+|.+.+.++++...+.+. + +-.++|+...+-..+..-.---.+++|+ .+..+++++...
T Consensus 115 lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~~G~~~~~~~~~~~iv~G~---~~~~~~~~~~l~ 187 (411)
T TIGR03026 115 TVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLREGNAVHDLLNPDRIVGGE---TEEAGEAVAELY 187 (411)
T ss_pred EEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCCCCChhhhhcCCCEEEEeC---CHHHHHHHHHHH
Confidence 46778899999999997555433 1 1244566544333221111111456664 455666666544
No 158
>PLN02200 adenylate kinase family protein
Probab=24.21 E-value=36 Score=31.27 Aligned_cols=38 Identities=24% Similarity=0.460 Sum_probs=30.8
Q ss_pred cCCceEEEEEcCCCCCcchh-HhhhhccccCCc--cccccc
Q 022297 261 KRSILSWLLVGGTRAIPHTF-KRLQKTVEFPHT--GSIVRR 298 (299)
Q Consensus 261 ~~~vd~~lvvG~~~s~~~~~-~~~~~~~~~~~~--~~~~~~ 298 (299)
.+..=.++|+|.+-|.-.|+ ++|.+...++|. |.++|.
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~ 80 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRR 80 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHH
Confidence 44455789999999999997 889988899996 557764
No 159
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=23.62 E-value=3e+02 Score=28.34 Aligned_cols=138 Identities=12% Similarity=0.017 Sum_probs=75.9
Q ss_pred cCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccCCeEEEEcChhhHHhhhhhhccCccCCCCccHH
Q 022297 118 KNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKE 197 (299)
Q Consensus 118 kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~~~~~vv~~~~e~~~l~~~~~~~q~~~tt~~~e 197 (299)
+|-.|| |.+-.--+..++++.++|+.+++|-+ +...++-...+ +...+..|..+-+-+.
T Consensus 417 ~~hiiI---~G~G~~G~~la~~L~~~g~~vvvId~-d~~~~~~~~~~-g~~~i~GD~~~~~~L~---------------- 475 (558)
T PRK10669 417 CNHALL---VGYGRVGSLLGEKLLAAGIPLVVIET-SRTRVDELRER-GIRAVLGNAANEEIMQ---------------- 475 (558)
T ss_pred CCCEEE---ECCChHHHHHHHHHHHCCCCEEEEEC-CHHHHHHHHHC-CCeEEEcCCCCHHHHH----------------
Confidence 455555 67777788899999999999888753 32323222211 2234555555443331
Q ss_pred HHHHHHHHhhcCCCCCCCCCceeEEEEccccChHHHHHHHHHHHHHhhhccC---ccchhhhHHhhcCCceEEEEEcCCC
Q 022297 198 AFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFG---VENMQCIRWLRKRSILSWLLVGGTR 274 (299)
Q Consensus 198 ~f~~~~~~~~~~~~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g---~~~~~ei~~l~~~~vd~~lvvG~~~ 274 (299)
+ .+.+ ..+. ++.-|+- .++...++..+++..++.+= .++.++.+.++.-.+|.++ +
T Consensus 476 ---~-------a~i~----~a~~-viv~~~~-~~~~~~iv~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~vv-----~ 534 (558)
T PRK10669 476 ---L-------AHLD----CARW-LLLTIPN-GYEAGEIVASAREKRPDIEIIARAHYDDEVAYITERGANQVV-----M 534 (558)
T ss_pred ---h-------cCcc----ccCE-EEEEcCC-hHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHcCCCEEE-----C
Confidence 0 1121 1232 3333333 33333455555555443221 1222333455555688776 4
Q ss_pred CCcchhHhhhhccccCCcccccc
Q 022297 275 AIPHTFKRLQKTVEFPHTGSIVR 297 (299)
Q Consensus 275 s~~~~~~~~~~~~~~~~~~~~~~ 297 (299)
......+|+.+.++.|+++..|.
T Consensus 535 p~~~~a~~i~~~l~~~~~~~~~~ 557 (558)
T PRK10669 535 GEREIARTMLELLETPPAGEVVT 557 (558)
T ss_pred hHHHHHHHHHHHhcCCCcccccC
Confidence 45568999999999999987663
No 160
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=23.54 E-value=6.2e+02 Score=23.74 Aligned_cols=92 Identities=10% Similarity=0.094 Sum_probs=57.2
Q ss_pred HHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEecCCcccccccc-ccCCCEEEEcCCCCCHHHHHHH------
Q 022297 43 VQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDV-VNKGDVVVLPAFGAAVEEMVTL------ 115 (299)
Q Consensus 43 V~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~e-i~~g~~VIIRAHGvs~~v~~~l------ 115 (299)
-.+|...++. +-.|+.+. .|+...+.|.+.|+....+. .+ +.+-|.||+ +---+..+..-+
T Consensus 14 ~~mA~~l~~~--G~~V~v~d---~~~~~~~~~~~~g~~~~~s~------~~~~~~aDvVi~-~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 14 SPMASNLLKQ--GHQLQVFD---VNPQAVDALVDKGATPAASP------AQAAAGAEFVIT-MLPNGDLVRSVLFGENGV 81 (296)
T ss_pred HHHHHHHHHC--CCeEEEEc---CCHHHHHHHHHcCCcccCCH------HHHHhcCCEEEE-ecCCHHHHHHHHcCcccH
Confidence 3444444443 23566664 48888999999998766532 22 233454443 322222222221
Q ss_pred ---HhcCCeEEeCCChhhHHHHHHHHHHhhCCCe
Q 022297 116 ---NNKNVQIVDTTCPWVSKVWTSVEKHKKGDYT 146 (299)
Q Consensus 116 ---~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~ 146 (299)
...|..+||.+--.....++.++.+.++|..
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~ 115 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS 115 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 1367789999999999999999999988866
No 161
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=23.48 E-value=1.5e+02 Score=28.43 Aligned_cols=100 Identities=10% Similarity=0.088 Sum_probs=63.8
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEecC-Cccccccccc---cCCCE
Q 022297 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV-EEGKKQFDVV---NKGDV 99 (299)
Q Consensus 24 ~M~IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~-~~~~~~~~ei---~~g~~ 99 (299)
.|-.+..+|.-||-|+..|+..+.+.. ++. ..|=-+||...+....+.|+-.+.- .-+.+.+.++ ..+.+
T Consensus 161 d~ilikdnHi~~~g~v~~av~~~r~~~---~~~---~I~VEv~tleea~eA~~~gaD~I~LD~~~~e~l~~~v~~~~~~i 234 (277)
T PRK05742 161 DAFLIKENHIAACGGIAQAVAAAHRIA---PGK---PVEVEVESLDELRQALAAGADIVMLDELSLDDMREAVRLTAGRA 234 (277)
T ss_pred ccEEecHHHHHHhCCHHHHHHHHHHhC---CCC---eEEEEeCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhCCCC
Confidence 355678899999999999988877643 222 2555589988887777778766631 1011111111 11334
Q ss_pred EEEcCCCCCHHHHHHHHhcCCeEEeCCChh
Q 022297 100 VVLPAFGAAVEEMVTLNNKNVQIVDTTCPW 129 (299)
Q Consensus 100 VIIRAHGvs~~v~~~l~~kgl~VIDATCP~ 129 (299)
.++=+=|++++-..++.+.|+.+|-..+++
T Consensus 235 ~leAsGGIt~~ni~~~a~tGvD~Isvg~lt 264 (277)
T PRK05742 235 KLEASGGINESTLRVIAETGVDYISIGAMT 264 (277)
T ss_pred cEEEECCCCHHHHHHHHHcCCCEEEEChhh
Confidence 455555788888777778888887776654
No 162
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=23.37 E-value=1.4e+02 Score=32.89 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=42.2
Q ss_pred CcccHHHHHHHHHHHHhhCCCCceEEeeccccC-HHHHHHHHhcCcEEec
Q 022297 35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIHN-PTVNKRLEEMAVQNIP 83 (299)
Q Consensus 35 FC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN-~~Vv~~L~~~GV~~v~ 83 (299)
+...|.+||+.+.++.++. ++++-+.|++..+ |.....|-++|+.++.
T Consensus 723 ~hPav~~ai~~vi~aa~~~-g~~vgicge~a~~~p~~~~~l~~~G~~~ls 771 (795)
T PRK06464 723 RNPAVKKLISMAIKAAKKA-GKYVGICGQAPSDHPDFAEWLVEEGIDSIS 771 (795)
T ss_pred CCHHHHHHHHHHHHHHHHc-CCEEEEcCCCCCCcHHHHHHHHHCCCCEEE
Confidence 4568999999998888765 5789999999998 9999999999999885
No 163
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=23.36 E-value=35 Score=29.84 Aligned_cols=15 Identities=47% Similarity=1.050 Sum_probs=13.0
Q ss_pred CCCCcccHHHHHHHH
Q 022297 32 SYGFCWGVERAVQIA 46 (299)
Q Consensus 32 ~~GFC~GVkRAV~~a 46 (299)
-.|||+|-.-|+.++
T Consensus 102 ~vGfc~GG~~a~~~a 116 (218)
T PF01738_consen 102 VVGFCWGGKLALLLA 116 (218)
T ss_dssp EEEETHHHHHHHHHH
T ss_pred EEEEecchHHhhhhh
Confidence 359999999999876
No 164
>PRK04293 adenylosuccinate synthetase; Provisional
Probab=23.36 E-value=1.1e+02 Score=30.53 Aligned_cols=94 Identities=13% Similarity=0.101 Sum_probs=59.0
Q ss_pred eEEeeccccCHHHHHHHHhcCcE---EecCC----cc-ccccccccC--CCEEEEcCCCCCHHHHHHHHhcCCeEEeCC-
Q 022297 58 IWITNEIIHNPTVNKRLEEMAVQ---NIPVE----EG-KKQFDVVNK--GDVVVLPAFGAAVEEMVTLNNKNVQIVDTT- 126 (299)
Q Consensus 58 VytlG~LIHN~~Vv~~L~~~GV~---~v~~~----~~-~~~~~ei~~--g~~VIIRAHGvs~~v~~~l~~kgl~VIDAT- 126 (299)
+.--|..||-+...+++++.|+. .+++. .+ ...+|.+.+ +..+==.--|+.|...+++..+|+++.|..
T Consensus 69 ~iG~GvVv~p~~L~~Ei~~L~~~~rL~Is~ra~li~p~H~~~D~~~E~~~~~IGTT~rGIGpaY~dk~~R~gir~~~~~~ 148 (333)
T PRK04293 69 AIGAGVLVDPEVLLKEVEELNVGGRVFVDYRCGIIEEKHVEEDRSDEHLSKKIGSTGTGCGPANADRVLRRLKLAKDVEE 148 (333)
T ss_pred EECCcEEECHHHHHHHHHHhCCCCCEEEcCCCccCCHHHHHHhHHhHHhCCCCCCCCCcccHhhHHHHhhhhhhccchhh
Confidence 33556778888888998888751 22220 00 001111110 111112334888999999999999998732
Q ss_pred -ChhhHHHHHHHHHHhhCCCeEEEEe
Q 022297 127 -CPWVSKVWTSVEKHKKGDYTSIIHG 151 (299)
Q Consensus 127 -CP~V~kv~~~v~~~~~~GY~IVIiG 151 (299)
=|||..+-....++.++|.+|++=|
T Consensus 149 l~~~v~d~~~~l~~al~~gk~vLfEG 174 (333)
T PRK04293 149 LEKYLTDVPEEVNEALDRGENVLIEG 174 (333)
T ss_pred hccceecHHHHHHHHHHCCCeEEEEe
Confidence 4567777777888888898888866
No 165
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=23.35 E-value=5.4e+02 Score=23.13 Aligned_cols=52 Identities=6% Similarity=0.025 Sum_probs=29.0
Q ss_pred EEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcC
Q 022297 27 VKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMA 78 (299)
Q Consensus 27 IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~G 78 (299)
++-+....-..|+...++.+.+..++.++-.+...|.=-+-+...+.+++.|
T Consensus 191 ~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~ 242 (360)
T cd04951 191 ILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALG 242 (360)
T ss_pred EEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcC
Confidence 3334444556778888887776665443345666665444444444445444
No 166
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=23.28 E-value=1.8e+02 Score=28.13 Aligned_cols=90 Identities=19% Similarity=0.219 Sum_probs=49.7
Q ss_pred ceEEeeccccCHHHHHHHHh----cCcEEec-CCccccccccccCCCEEEEcCCC--CCHHHHHHHHhcCCeEEeCCChh
Q 022297 57 KIWITNEIIHNPTVNKRLEE----MAVQNIP-VEEGKKQFDVVNKGDVVVLPAFG--AAVEEMVTLNNKNVQIVDTTCPW 129 (299)
Q Consensus 57 ~VytlG~LIHN~~Vv~~L~~----~GV~~v~-~~~~~~~~~ei~~g~~VIIRAHG--vs~~v~~~l~~kgl~VIDATCP~ 129 (299)
.|.+-| .|+.-.++|.+ ..+..+. +..+.+++.++-.+.-|||.+=| ..+.+.+.+.+.|...|| ||-+
T Consensus 25 ~v~va~---r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~~yvD-~~~~ 100 (386)
T PF03435_consen 25 EVTVAD---RNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPFFGEPVARACIEAGVHYVD-TSYV 100 (386)
T ss_dssp EEEEEE---SSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT-EEEE-SS-H
T ss_pred cEEEEE---CCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccchhHHHHHHHHHhCCCeec-cchh
Confidence 344444 45555555543 2444433 11122223443333337776655 468899999999999999 6666
Q ss_pred hHHHHHHHHHHhhCCCeEEEEe
Q 022297 130 VSKVWTSVEKHKKGDYTSIIHG 151 (299)
Q Consensus 130 V~kv~~~v~~~~~~GY~IVIiG 151 (299)
.....+.-++..++|- .+|+|
T Consensus 101 ~~~~~~l~~~a~~~g~-~~l~~ 121 (386)
T PF03435_consen 101 TEEMLALDEEAKEAGV-TALPG 121 (386)
T ss_dssp HHHHHHCHHHHHHTTS-EEE-S
T ss_pred HHHHHHHHHHHHhhCC-EEEeC
Confidence 6666666666666663 44444
No 167
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=23.25 E-value=1.1e+02 Score=30.35 Aligned_cols=42 Identities=17% Similarity=0.373 Sum_probs=25.8
Q ss_pred CCEEEEcCCCCC-------HHHHHHHHhcCCeEEeCCChhhHHHHHHHHH
Q 022297 97 GDVVVLPAFGAA-------VEEMVTLNNKNVQIVDTTCPWVSKVWTSVEK 139 (299)
Q Consensus 97 g~~VIIRAHGvs-------~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~ 139 (299)
-|.|||.+=+|+ .+..++++++|..||=+=| ++..--..+.+
T Consensus 37 aD~viinTC~v~~~a~~~~~~~i~~~~~~~~~vvvgGc-~a~~~pee~~~ 85 (430)
T TIGR01125 37 ADYVIVNTCGFIEDARQESIDTIGELADAGKKVIVTGC-LVQRYKEELKE 85 (430)
T ss_pred CCEEEEeCCCccchHHHHHHHHHHHHHhcCCCEEEECC-ccccchHHHHh
Confidence 467888887773 3334455556777875666 55555544443
No 168
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=23.24 E-value=84 Score=24.78 Aligned_cols=15 Identities=20% Similarity=0.248 Sum_probs=12.8
Q ss_pred eEEEEEcCCCCCcch
Q 022297 265 LSWLLVGGTRAIPHT 279 (299)
Q Consensus 265 d~~lvvG~~~s~~~~ 279 (299)
|+.+++||++++.+-
T Consensus 80 ~~~ivvGG~~~t~~~ 94 (125)
T cd02065 80 DIPVVVGGAHPTADP 94 (125)
T ss_pred CCeEEEeCCcCCccc
Confidence 889999999998653
No 169
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=22.90 E-value=6.7e+02 Score=23.96 Aligned_cols=98 Identities=17% Similarity=0.151 Sum_probs=54.1
Q ss_pred CCCceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHH---HhcCCeEE----eCC
Q 022297 54 PEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTL---NNKNVQIV----DTT 126 (299)
Q Consensus 54 ~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l---~~kgl~VI----DAT 126 (299)
+.++||.+| .+...+.|+..|+..+++.+ .....-+|+-.-.=.+.+-+.++ ..+|...| |.|
T Consensus 90 ~~~kv~viG----~~~l~~~l~~~G~~~~~~~~------~~~~d~Vv~g~d~~~~~e~l~~a~~~i~~g~~fI~tNpD~~ 159 (269)
T COG0647 90 PGKKVYVIG----EEGLKEELEGAGFELVDEEE------PARVDAVVVGLDRTLTYEKLAEALLAIAAGAPFIATNPDLT 159 (269)
T ss_pred CCCEEEEEC----CcchHHHHHhCCcEEeccCC------CCcccEEEEecCCCCCHHHHHHHHHHHHcCCcEEEeCCCcc
Confidence 346899999 67888999999999887531 10001233334444455554433 34667775 777
Q ss_pred ChhhHHHH----HHHHHHh-hCCCeEEEEecCCCcceeee
Q 022297 127 CPWVSKVW----TSVEKHK-KGDYTSIIHGKYSHEETVAT 161 (299)
Q Consensus 127 CP~V~kv~----~~v~~~~-~~GY~IVIiGd~~HPEV~Gi 161 (299)
||-=.... ..+.-+. .-|....++||++=+=....
T Consensus 160 ~p~~~g~~pgaGai~~~~~~~tg~~~~~~GKP~~~i~~~a 199 (269)
T COG0647 160 VPTERGLRPGAGAIAALLEQATGREPTVIGKPSPAIYEAA 199 (269)
T ss_pred ccCCCCCccCcHHHHHHHHHhhCCcccccCCCCHHHHHHH
Confidence 75332211 1222222 23555567887765444433
No 170
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=22.72 E-value=1.7e+02 Score=28.71 Aligned_cols=46 Identities=13% Similarity=0.090 Sum_probs=34.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEE
Q 022297 99 VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIH 150 (299)
Q Consensus 99 ~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIi 150 (299)
.+|+-+-|.|.. .+++++.|+.|+ .+||-+.-. +++.+.|-..||+
T Consensus 84 ~~V~~~~G~P~~-~~~lk~~Gi~v~-~~v~s~~~A----~~a~~~GaD~vVa 129 (320)
T cd04743 84 TFALIAGGRPDQ-ARALEAIGISTY-LHVPSPGLL----KQFLENGARKFIF 129 (320)
T ss_pred cEEEEcCCChHH-HHHHHHCCCEEE-EEeCCHHHH----HHHHHcCCCEEEE
Confidence 355666677765 799999999999 777777665 4566788877775
No 171
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=22.50 E-value=2.5e+02 Score=30.67 Aligned_cols=66 Identities=11% Similarity=0.025 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeE
Q 022297 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 147 (299)
Q Consensus 68 ~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~I 147 (299)
++.+++|+++|++++- -.|| -......-+++.|+.=+=|-|-=--|++ .++++.++|+.|
T Consensus 543 ~~aI~~L~~~Gi~~~m-----------LTGD--------n~~~A~~iA~~lGId~v~AellPedK~~-~V~~l~~~g~~V 602 (713)
T COG2217 543 KEAIAALKALGIKVVM-----------LTGD--------NRRTAEAIAKELGIDEVRAELLPEDKAE-IVRELQAEGRKV 602 (713)
T ss_pred HHHHHHHHHCCCeEEE-----------EcCC--------CHHHHHHHHHHcChHhheccCCcHHHHH-HHHHHHhcCCEE
Confidence 5667777777776542 1233 1233344455556533334444444443 567788999999
Q ss_pred EEEecC
Q 022297 148 IIHGKY 153 (299)
Q Consensus 148 VIiGd~ 153 (299)
..+||-
T Consensus 603 amVGDG 608 (713)
T COG2217 603 AMVGDG 608 (713)
T ss_pred EEEeCC
Confidence 999983
No 172
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=22.23 E-value=4.1e+02 Score=27.14 Aligned_cols=31 Identities=26% Similarity=0.298 Sum_probs=16.7
Q ss_pred eEEEEEcCCCCCcchhHhhhhccccCCccccccc
Q 022297 265 LSWLLVGGTRAIPHTFKRLQKTVEFPHTGSIVRR 298 (299)
Q Consensus 265 d~~lvvG~~~s~~~~~~~~~~~~~~~~~~~~~~~ 298 (299)
++.+|+||.+.+...-.-|. ++|+--.+|+-
T Consensus 92 ~~~iV~GG~h~t~~~~~~l~---~~p~vD~Vv~G 122 (497)
T TIGR02026 92 NAIIVLGGIHPTFMFHQVLT---EAPWIDFIVRG 122 (497)
T ss_pred CCEEEEcCCCcCcCHHHHHh---cCCCccEEEeC
Confidence 56788888876643322222 24555555543
No 173
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=22.12 E-value=1e+02 Score=26.36 Aligned_cols=62 Identities=15% Similarity=0.258 Sum_probs=34.5
Q ss_pred HHHHHHhcCcEEecCCccccccccccCCCEEEEcCCC-------CCHHH--------HHHHHhcCCeEEeCCChhhHHHH
Q 022297 70 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG-------AAVEE--------MVTLNNKNVQIVDTTCPWVSKVW 134 (299)
Q Consensus 70 Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHG-------vs~~v--------~~~l~~kgl~VIDATCP~V~kv~ 134 (299)
+++-|++.|+.++ .||++.+| +|++. ...+++.|.+|+|-+
T Consensus 41 ~L~~~k~~g~~~l----------------fVi~PvNg~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~s-------- 96 (130)
T PF04914_consen 41 LLDVCKELGIDVL----------------FVIQPVNGKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVADFS-------- 96 (130)
T ss_dssp HHHHHHHTT-EEE----------------EEE----HHHHHHTT--HHHHHHHHHHHHHHHHTTT--EEE-T--------
T ss_pred HHHHHHHcCCceE----------------EEecCCcHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEecc--------
Confidence 5566677777654 47888886 56654 455677787877754
Q ss_pred HHHHHHhhCCCeEEEEecCCCcceeeecccC
Q 022297 135 TSVEKHKKGDYTSIIHGKYSHEETVATASFA 165 (299)
Q Consensus 135 ~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~ 165 (299)
..+|.--++.|.-|| |-.||.
T Consensus 97 -------~~~y~~yfm~D~iHl---gw~GWv 117 (130)
T PF04914_consen 97 -------DDEYEPYFMQDTIHL---GWKGWV 117 (130)
T ss_dssp -------TGTTSTTSBSSSSSB----THHHH
T ss_pred -------cCCCCCceeeecccC---chhhHH
Confidence 667777788899997 444554
No 174
>PF04322 DUF473: Protein of unknown function (DUF473); InterPro: IPR007417 This is a family of uncharacterised archaeal proteins.
Probab=22.07 E-value=1.3e+02 Score=25.62 Aligned_cols=81 Identities=17% Similarity=0.186 Sum_probs=49.4
Q ss_pred CHHHHHHHHhcCcEEec--CCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCC
Q 022297 67 NPTVNKRLEEMAVQNIP--VEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGD 144 (299)
Q Consensus 67 N~~Vv~~L~~~GV~~v~--~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~G 144 (299)
.|.++++|.+..+++++ +......+..+..||.|++..=. ++ .+...||-.+.++.+. +--
T Consensus 10 s~~vi~eL~~~~~RTiEirSa~N~~~~~~~~~Gd~VFlT~~~--~~----------Dl~~Gt~GiIa~V~~~-----~i~ 72 (119)
T PF04322_consen 10 SRRVIDELKKNHIRTIEIRSAHNVIALESLDPGDRVFLTSVS--LE----------DLTPGTEGIIAEVKKI-----EIS 72 (119)
T ss_pred CHHHHHHHHhCCceEEEEEcchheeeeecCCCCCEEEEecCC--HH----------HCCCCCCeEEEEEEEE-----EEE
Confidence 57899999999999987 33333345566679988887632 22 2455777776655421 222
Q ss_pred CeEEEEecCCC-cceeeeccc
Q 022297 145 YTSIIHGKYSH-EETVATASF 164 (299)
Q Consensus 145 Y~IVIiGd~~H-PEV~Gi~g~ 164 (299)
-+-+..+...| .|-+-+.+.
T Consensus 73 ~qri~~~~~~~~EErE~~~aR 93 (119)
T PF04322_consen 73 MQRIVWENSSYYEEREMMVAR 93 (119)
T ss_pred EEEEeecCCCccceeEeEEEE
Confidence 33455565555 666655443
No 175
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=22.07 E-value=1.8e+02 Score=27.24 Aligned_cols=113 Identities=11% Similarity=0.042 Sum_probs=65.1
Q ss_pred cchHHHHHHhcCceeeee-ceEEEEe-------------CCCCCcccHHHHHHHHHHHHhh--CCCCceEEeeccccCHH
Q 022297 6 TSDIIKKLKENGFEYTWG-NVKVKLA-------------ESYGFCWGVERAVQIAYEARKQ--FPEEKIWITNEIIHNPT 69 (299)
Q Consensus 6 ~s~~~~~~~~~~~~~~~~-~M~IilA-------------~~~GFC~GVkRAV~~a~~~~~~--~~~~~VytlG~LIHN~~ 69 (299)
.+++++.|++.|.+.-.- .++|.-. ..-..-|==.+||+........ ..+.++|+.|+ .
T Consensus 30 ~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~NAV~~~~~~~~~~~~~~~~~~AVG~-----~ 104 (266)
T PRK08811 30 HAPLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPAAVRAAHRLLPLQRPARAHWLSVGE-----G 104 (266)
T ss_pred HHHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECHHHHHHHHHHhcccCccCCeEEEECH-----H
Confidence 467888999888554332 3333211 1122223335555555432221 12346889985 5
Q ss_pred HHHHHHhcCcEEec--CCccccccccc----cCCC-EEEEcCCCCCHHHHHHHHhcCCeEE
Q 022297 70 VNKRLEEMAVQNIP--VEEGKKQFDVV----NKGD-VVVLPAFGAAVEEMVTLNNKNVQIV 123 (299)
Q Consensus 70 Vv~~L~~~GV~~v~--~~~~~~~~~ei----~~g~-~VIIRAHGvs~~v~~~l~~kgl~VI 123 (299)
--+.|++.|+..+- +..+-+.+-++ .+|. ++++|+.|-.+...+.|+++|..|.
T Consensus 105 TA~aL~~~G~~~~~~P~~~~se~Ll~l~~~~~~g~~vLi~rg~~gr~~L~~~L~~~G~~V~ 165 (266)
T PRK08811 105 TARALQACGIDEVVRPTRMDSEGLLALPLAQAPLQAVGLITAPGGRGLLAPTLQQRGARIL 165 (266)
T ss_pred HHHHHHHcCCCceeCCCCCCcHHHHhChhhhCCCCEEEEEeCCCcHHHHHHHHHHCCCEEe
Confidence 66889999986432 21111111111 1344 4679999999999999999998773
No 176
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=22.02 E-value=1.2e+02 Score=28.13 Aligned_cols=66 Identities=24% Similarity=0.152 Sum_probs=44.8
Q ss_pred ccccCCCEEEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHh-hCCCeEEEEecCCCcceeeeccc
Q 022297 92 DVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHK-KGDYTSIIHGKYSHEETVATASF 164 (299)
Q Consensus 92 ~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~-~~GY~IVIiGd~~HPEV~Gi~g~ 164 (299)
.-+++|++|+|-+=-..-...+.|.+++++|| +..+ ..+..+. ..+.+++++|=.-+|+..++.|-
T Consensus 89 ~~I~~g~~Ifld~GsT~~~la~~L~~~~ltVv-Tnsl------~ia~~l~~~~~~~v~l~GG~~~~~~~~~~G~ 155 (251)
T PRK13509 89 QLCNPGESVVINCGSTAFLLGRELCGKPVQII-TNYL------PLANYLIDQEHDSVIIMGGQYNKSQSITLSP 155 (251)
T ss_pred HhCCCCCEEEECCcHHHHHHHHHhCCCCeEEE-eCCH------HHHHHHHhCCCCEEEEECCeEcCCcceeECH
Confidence 44567998888765555677777766778887 3332 4445554 46789999997777777666653
No 177
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=21.85 E-value=1.2e+02 Score=32.21 Aligned_cols=145 Identities=18% Similarity=0.174 Sum_probs=99.0
Q ss_pred HHHHHHhcCce-------eeeeceEEEEeCCCCCcccH----------HHHHHHHHHHHhhCCCCceE-EeeccccCHHH
Q 022297 9 IIKKLKENGFE-------YTWGNVKVKLAESYGFCWGV----------ERAVQIAYEARKQFPEEKIW-ITNEIIHNPTV 70 (299)
Q Consensus 9 ~~~~~~~~~~~-------~~~~~M~IilA~~~GFC~GV----------kRAV~~a~~~~~~~~~~~Vy-tlG~LIHN~~V 70 (299)
+|.-.|+.|.. .+.-.|-|..|.. -+|.|= .+-++.|..+- .+-|. =||=|--|-..
T Consensus 13 VirTakkmGI~tVAV~Sd~D~~SlHVk~ADe-av~ig~a~~~~SYL~~~~I~~aa~~tg----aqaihPGYGFLSEn~~F 87 (670)
T KOG0238|consen 13 VIRTAKKMGIRTVAVYSDADRNSLHVKMADE-AVCIGPAPAAQSYLRMDKIIDAAKRTG----AQAIHPGYGFLSENAEF 87 (670)
T ss_pred hhhHHHHhCCeEEEEEccCccccceeecccc-eeecCCCchhhhhhhHHHHHHHHHhcC----CceecCCccccccchHH
Confidence 45555565522 2223577777765 367773 23333333222 22233 58889999999
Q ss_pred HHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEE
Q 022297 71 NKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIH 150 (299)
Q Consensus 71 v~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIi 150 (299)
.+.+++.|+.|+.. +++ .||.-|.--.-++-+++.|+.+|-.---.........+...+=||.|.|
T Consensus 88 ae~c~~~Gi~FiGP-----------~~~--aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIgyPvMi- 153 (670)
T KOG0238|consen 88 AELCEDAGITFIGP-----------PPS--AIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIGYPVMI- 153 (670)
T ss_pred HHHHHHcCCeEECC-----------CHH--HHHHhcchHHHHHHHHhcCCccccCcccccccHHHHHHHHHhcCCcEEE-
Confidence 99999999999963 222 3788888777788888889999888777777788777888888999986
Q ss_pred ecCCCcceeeecccCCe-EEEEcChhhHHhh
Q 022297 151 GKYSHEETVATASFAGK-YIIVKNMKEAEYV 180 (299)
Q Consensus 151 Gd~~HPEV~Gi~g~~~~-~~vv~~~~e~~~l 180 (299)
+++.|-.++ --++.+.+|++..
T Consensus 154 --------Ka~~GGGGkGMria~~~~ef~~~ 176 (670)
T KOG0238|consen 154 --------KATAGGGGKGMRIAWSEEEFEEG 176 (670)
T ss_pred --------EeccCCCCcceEeecChHHHHHH
Confidence 456665543 4678888887654
No 178
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=21.80 E-value=2.2e+02 Score=24.62 Aligned_cols=98 Identities=11% Similarity=0.087 Sum_probs=56.5
Q ss_pred CCceEEeeccccCHHHHHHHHhcCcEEecCC----ccccc----cccccCC--CEEEEcC-CCCCHHHHHHHHhcCCeEE
Q 022297 55 EEKIWITNEIIHNPTVNKRLEEMAVQNIPVE----EGKKQ----FDVVNKG--DVVVLPA-FGAAVEEMVTLNNKNVQIV 123 (299)
Q Consensus 55 ~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~----~~~~~----~~ei~~g--~~VIIRA-HGvs~~v~~~l~~kgl~VI 123 (299)
+++|.....=.+++...+.|+++|..+..-. ...++ ...+..+ +.|+|.| .++ ....+.+.+.+ ..-
T Consensus 122 ~~~il~~~g~~~~~~l~~~L~~~g~~v~~~~~Y~~~~~~~~~~~~~~l~~~~~~~iiftS~~~v-~~f~~~~~~~~-~~~ 199 (239)
T cd06578 122 GKRILRPRGGRAREDLAEALRERGAEVDEVEVYRTVPPDLDAELLELLEEGAIDAVLFTSPSTV-RNLLELLGKEG-RAL 199 (239)
T ss_pred CCEEEEEcCcchhHHHHHHHHHCCCEEEEEEEEEEECCCCcHHHHHHHHcCCCcEEEEeCHHHH-HHHHHHHhhhh-hhh
Confidence 4566666666678899999999998765421 00000 1112222 2455554 332 33344444433 223
Q ss_pred eCCChhhHHHHHHHHHHhhCCCeEEEEecCC
Q 022297 124 DTTCPWVSKVWTSVEKHKKGDYTSIIHGKYS 154 (299)
Q Consensus 124 DATCP~V~kv~~~v~~~~~~GY~IVIiGd~~ 154 (299)
-.+|+++.--.+.++.+.+.|++.+++.+..
T Consensus 200 ~~~~~~~aig~~t~~~l~~~g~~~~~~~~~~ 230 (239)
T cd06578 200 LKNVKIAAIGPRTAEALRELGLKVVIVAESP 230 (239)
T ss_pred hcCCeEEEECHHHHHHHHHcCCCceeeecCC
Confidence 3677777777777788888888887776443
No 179
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=21.78 E-value=98 Score=27.10 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=27.5
Q ss_pred eEEeCCChhhHHHHHHHHHHhhCCCeEEEE--ecCCCcc
Q 022297 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIH--GKYSHEE 157 (299)
Q Consensus 121 ~VIDATCP~V~kv~~~v~~~~~~GY~IVIi--Gd~~HPE 157 (299)
...|-+||+=++.|..+.+ ...++++.++ .-.+||+
T Consensus 83 ~f~D~~Cp~C~~~~~~l~~-~~~~v~v~~~~~p~~~~~~ 120 (197)
T cd03020 83 VFTDPDCPYCRKLEKELKP-NADGVTVRIFPVPILGLPD 120 (197)
T ss_pred EEECCCCccHHHHHHHHhh-ccCceEEEEEEcCcCCCcc
Confidence 4689999999999999987 5667877776 3334444
No 180
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=21.71 E-value=2.7e+02 Score=23.22 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=34.2
Q ss_pred CEEEEc--CC---CCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeEEE
Q 022297 98 DVVVLP--AF---GAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSII 149 (299)
Q Consensus 98 ~~VIIR--AH---Gvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVI 149 (299)
++|||- .+ =+||++++.++++|+.+.+..=|---+.. ..+..+|.+|..
T Consensus 60 eivliGTG~~~~~~~~~~~~~~l~~~Gi~ve~m~T~aAcrTY---N~L~~EgRrV~A 113 (117)
T cd05126 60 EVIVIGTGQSGALKVPPETVEKLEKRGVEVLVLPTEEAVKRY---NELAGKGRRVLA 113 (117)
T ss_pred CEEEEcCCCCccccCCHHHHHHHHhcCCEEEEcChHHHHHHH---HHHHhCCCeEEE
Confidence 456653 23 36899999999999999986555444444 456678888764
No 181
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=21.70 E-value=2.4e+02 Score=28.79 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=31.7
Q ss_pred CHHHHHHHHhcCCeE-EeCCChhhHHHHHHHHHHhhCCCe-EEEEecCC
Q 022297 108 AVEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYT-SIIHGKYS 154 (299)
Q Consensus 108 s~~v~~~l~~kgl~V-IDATCP~V~kv~~~v~~~~~~GY~-IVIiGd~~ 154 (299)
..++.+.|++.|+++ +|-.- .++-++.++....|+. +|+||++.
T Consensus 304 A~~l~~~Lr~~girv~lD~r~---~s~gkk~k~Ae~~GvP~~IiIG~~E 349 (472)
T TIGR00408 304 AREVRSRLKKAGFRVHIDDRD---NRPGRKFYQWEIKGIPLRIEVGPND 349 (472)
T ss_pred HHHHHHHHHHCCCEEEEECCC---CCHHHHHHHHHHCCCCEEEEECcch
Confidence 356778888999987 66543 3677777788888987 56677553
No 182
>PF10674 Ycf54: Protein of unknown function (DUF2488); InterPro: IPR019616 This entry represents proteins annotated as Ycf54. It is found encoded in the chloroplast genomes of algae, it is also found in plants and in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.; PDB: 3JSR_A 3HZE_D.
Probab=21.66 E-value=73 Score=26.14 Aligned_cols=59 Identities=17% Similarity=0.273 Sum_probs=29.2
Q ss_pred eEEEEccccChHHHHHHHHHHHHHhhhccCccchhhhHHhhcCCceEEEEEcCCCCCcchhHhhhhccccC
Q 022297 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIRWLRKRSILSWLLVGGTRAIPHTFKRLQKTVEFP 290 (299)
Q Consensus 220 v~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~~~ei~~l~~~~vd~~lvvG~~~s~~~~~~~~~~~~~~~ 290 (299)
..+.||.-|..+ +.+-+.|+++...+ .+. .|.+|+|||.--+==....|+-+++.+.-|
T Consensus 5 f~~As~~Fl~~e--EpleEvLrER~r~y--~e~--------~k~iDFWlv~~PaFLe~p~~~~~~~k~~~p 63 (93)
T PF10674_consen 5 FVLASAKFLLEE--EPLEEVLRERTRHY--KEK--------NKEIDFWLVKEPAFLEAPEFPEIKKKLPQP 63 (93)
T ss_dssp EEEEEHHHHHCT--S-HHHHHHHHHHHH--HHC--------T----EEEEESBGGGGSGGGHHHHHHS-SS
T ss_pred EEEechhhhccC--ccHHHHHHHHHHHH--Hhc--------CCCccEEEecChhhcCccccHHHHHhCCCC
Confidence 456666666554 44444576665544 222 788999999754432222456666655544
No 183
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=21.55 E-value=1.4e+02 Score=28.11 Aligned_cols=28 Identities=7% Similarity=0.147 Sum_probs=19.4
Q ss_pred HHhhcCCceEEEEEcCCCCCcchhHhhh
Q 022297 257 RWLRKRSILSWLLVGGTRAIPHTFKRLQ 284 (299)
Q Consensus 257 ~~l~~~~vd~~lvvG~~~s~~~~~~~~~ 284 (299)
+....+.+|+++++||=-.-=++++.++
T Consensus 70 ~~~~~~~~D~ii~lGGDGT~L~~~~~~~ 97 (285)
T PF01513_consen 70 EEMLEEGVDLIIVLGGDGTFLRAARLFG 97 (285)
T ss_dssp HHHHCCCSSEEEEEESHHHHHHHHHHCT
T ss_pred hhhcccCCCEEEEECCCHHHHHHHHHhc
Confidence 3445899999999999554444555544
No 184
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=21.53 E-value=5.2e+02 Score=23.66 Aligned_cols=68 Identities=9% Similarity=0.135 Sum_probs=36.1
Q ss_pred CCceEEeeccccC----HHHHHHHHhcCcEEecCCcc---ccccccccCCCEE-EEcCCCCCHHHHH---HHHhcCCeEE
Q 022297 55 EEKIWITNEIIHN----PTVNKRLEEMAVQNIPVEEG---KKQFDVVNKGDVV-VLPAFGAAVEEMV---TLNNKNVQIV 123 (299)
Q Consensus 55 ~~~VytlG~LIHN----~~Vv~~L~~~GV~~v~~~~~---~~~~~ei~~g~~V-IIRAHGvs~~v~~---~l~~kgl~VI 123 (299)
.++||++|.=. + .+...+|...|..+....+. ...+..+.++|.+ +|+--|-++++.+ .++++|..||
T Consensus 128 a~~I~i~G~G~-s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI 206 (278)
T PRK11557 128 ARRIILTGIGA-SGLVAQNFAWKLMKIGINAVAERDMHALLATVQALSPDDLLLAISYSGERRELNLAADEALRVGAKVL 206 (278)
T ss_pred CCeEEEEecCh-hHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEE
Confidence 35799998631 2 23334556668776542111 0122245567764 5777788886544 3344444443
No 185
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=21.52 E-value=1.5e+02 Score=27.12 Aligned_cols=67 Identities=12% Similarity=0.035 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCeE------EeCCChhhHHHHH---HHH
Q 022297 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI------VDTTCPWVSKVWT---SVE 138 (299)
Q Consensus 68 ~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~V------IDATCP~V~kv~~---~v~ 138 (299)
..+++.|+++|+-|+|+.+ .+..+ ..+.+++.|+.. +|.. +....|.+ .+.
T Consensus 109 ~~vl~~l~~~gl~FvDS~T---------~~~s~----------a~~~A~~~gvp~~~rdvfLD~~-~~~~~I~~ql~~~~ 168 (213)
T PF04748_consen 109 RWVLEVLKERGLFFVDSRT---------TPRSV----------APQVAKELGVPAARRDVFLDND-QDEAAIRRQLDQAA 168 (213)
T ss_dssp HHHHHHHHHTT-EEEE-S-----------TT-S----------HHHHHHHCT--EEE-SEETTST--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEeCCC---------CcccH----------HHHHHHHcCCCEEeeceecCCC-CCHHHHHHHHHHHH
Confidence 5688899999999998632 12211 234555666653 5755 55555444 444
Q ss_pred HHhhCCCeEEEEecCC
Q 022297 139 KHKKGDYTSIIHGKYS 154 (299)
Q Consensus 139 ~~~~~GY~IVIiGd~~ 154 (299)
+.+++.-..|.||++.
T Consensus 169 ~~A~~~G~aI~Igh~~ 184 (213)
T PF04748_consen 169 RIARKQGSAIAIGHPR 184 (213)
T ss_dssp HHHHCCSEEEEEEE-S
T ss_pred HhhhhcCcEEEEEcCC
Confidence 4555444666689653
No 186
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=21.45 E-value=6.1e+02 Score=25.64 Aligned_cols=95 Identities=11% Similarity=0.068 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhhC--CCCceEEee--ccccCHHHH---HHHHhcCcEEecC-Cc--cc---cccccccC--CCEEEEc
Q 022297 39 VERAVQIAYEARKQF--PEEKIWITN--EIIHNPTVN---KRLEEMAVQNIPV-EE--GK---KQFDVVNK--GDVVVLP 103 (299)
Q Consensus 39 VkRAV~~a~~~~~~~--~~~~VytlG--~LIHN~~Vv---~~L~~~GV~~v~~-~~--~~---~~~~ei~~--g~~VIIR 103 (299)
+..+++.+.+.+..+ +++.|...| ++..+|... +.++++|+.+.=. .+ .. +.++.+.+ =|.|.|.
T Consensus 56 ~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld~v~iS 135 (404)
T TIGR03278 56 PQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVREVSFT 135 (404)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEECCcccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCCEEEEe
Confidence 566666666655422 233444333 566666654 4456667764311 11 11 12333332 2568899
Q ss_pred CCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhh
Q 022297 104 AFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKK 142 (299)
Q Consensus 104 AHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~ 142 (299)
-|+..|+.++++... |...++-+.++++++
T Consensus 136 vka~dpe~h~kl~G~---------~~a~~ILe~L~~L~e 165 (404)
T TIGR03278 136 VFATDPELRREWMKD---------PTPEASLQCLRRFCE 165 (404)
T ss_pred cccCCHHHHHHHhCC---------CCHHHHHHHHHHHHh
Confidence 999999999987542 222666666666666
No 187
>PRK09875 putative hydrolase; Provisional
Probab=21.41 E-value=7.3e+02 Score=23.82 Aligned_cols=125 Identities=12% Similarity=0.096 Sum_probs=78.4
Q ss_pred chHHHHHHhc--CceeeeeceEE-EEeCCCC-CcccHHHHHHHHHHHHhhCCCCceEEeeccc-cCHHHHHHHHhcCc--
Q 022297 7 SDIIKKLKEN--GFEYTWGNVKV-KLAESYG-FCWGVERAVQIAYEARKQFPEEKIWITNEII-HNPTVNKRLEEMAV-- 79 (299)
Q Consensus 7 s~~~~~~~~~--~~~~~~~~M~I-ilA~~~G-FC~GVkRAV~~a~~~~~~~~~~~VytlG~LI-HN~~Vv~~L~~~GV-- 79 (299)
..+++-|.++ |+.+..|. | .++-+.| +.--.++.++.|-++..+. +-+|.+--+.= .=..+++-|++.|+
T Consensus 103 ~~~i~ei~~Gi~gt~ikaGv--IGeiG~~~~~it~~E~kvl~Aaa~a~~~T-G~pi~~Ht~~~~~g~e~l~il~e~Gvd~ 179 (292)
T PRK09875 103 QEMVDEIEQGIDGTELKAGI--IAEIGSSEGKITPLEEKVFIAAALAHNQT-GRPISTHTSFSTMGLEQLALLQAHGVDL 179 (292)
T ss_pred HHHHHHHHHhhccCCCcccE--EEEEecCCCCCCHHHHHHHHHHHHHHHHH-CCcEEEcCCCccchHHHHHHHHHcCcCc
Confidence 3456666665 55555565 4 4455554 7777888888876665543 45666542221 22356788888888
Q ss_pred -EE-ecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCeE-EeC-----CChhhHHHHHHHHHHhhCCC--eEEE
Q 022297 80 -QN-IPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI-VDT-----TCPWVSKVWTSVEKHKKGDY--TSII 149 (299)
Q Consensus 80 -~~-v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~V-IDA-----TCP~V~kv~~~v~~~~~~GY--~IVI 149 (299)
++ +... +. ..+++.+.++.++|+.| .|+ -+|.-+ .-+.+..+.++|| +|++
T Consensus 180 ~rvvi~H~-----------d~-------~~d~~~~~~l~~~G~~l~fD~~g~~~~~pd~~-r~~~i~~L~~~Gy~drilL 240 (292)
T PRK09875 180 SRVTVGHC-----------DL-------KDNLDNILKMIDLGAYVQFDTIGKNSYYPDEK-RIAMLHALRDRGLLNRVML 240 (292)
T ss_pred ceEEEeCC-----------CC-------CCCHHHHHHHHHcCCEEEeccCCCcccCCHHH-HHHHHHHHHhcCCCCeEEE
Confidence 22 2221 00 15788999999999999 575 467654 4667778888874 6777
Q ss_pred EecC
Q 022297 150 HGKY 153 (299)
Q Consensus 150 iGd~ 153 (299)
-+|-
T Consensus 241 S~D~ 244 (292)
T PRK09875 241 SMDI 244 (292)
T ss_pred eCCC
Confidence 5554
No 188
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.38 E-value=1.7e+02 Score=28.21 Aligned_cols=66 Identities=9% Similarity=0.056 Sum_probs=37.1
Q ss_pred ceeEEEEccccC--hHHHHHHHHHHHHHhhhccCccchh----------------hhHHhhcCCceEEEEEcCCCCCcch
Q 022297 218 VKVGIANQTTML--KGETEEIGKLVEKTMMRKFGVENMQ----------------CIRWLRKRSILSWLLVGGTRAIPHT 279 (299)
Q Consensus 218 ~kv~Iv~QTT~~--~~~~~~i~~~l~~~~~~~~g~~~~~----------------ei~~l~~~~vd~~lvvG~~~s~~~~ 279 (299)
.+++|+..+.-. .+.++++.++|++.....+-.+... +...+ .+.+|+++++||=-.-=++
T Consensus 6 ~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~lGGDGT~L~a 84 (296)
T PRK04539 6 HNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTEL-GQYCDLVAVLGGDGTFLSV 84 (296)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhc-CcCCCEEEEECCcHHHHHH
Confidence 578888776443 3345566666655544433211000 01233 4579999999997666555
Q ss_pred hHhhh
Q 022297 280 FKRLQ 284 (299)
Q Consensus 280 ~~~~~ 284 (299)
+..+.
T Consensus 85 a~~~~ 89 (296)
T PRK04539 85 AREIA 89 (296)
T ss_pred HHHhc
Confidence 55554
No 189
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=21.35 E-value=5.4e+02 Score=25.98 Aligned_cols=109 Identities=12% Similarity=0.064 Sum_probs=57.0
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEeeccccCHHH---HHHHHhcCcEEe--cCCcccccccc-ccCCC-EEEEcCCCCC
Q 022297 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTV---NKRLEEMAVQNI--PVEEGKKQFDV-VNKGD-VVVLPAFGAA 108 (299)
Q Consensus 36 C~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~V---v~~L~~~GV~~v--~~~~~~~~~~e-i~~g~-~VIIRAHGvs 108 (299)
..|. -|+.++...+-+ ++..|.+ .+..|.... .+.|+..|+.+. ++..+.+++.+ +.++. .|++-..+=+
T Consensus 91 sSG~-~Ai~~al~~ll~-~Gd~VI~-~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l~~~l~~~tk~V~~e~~~Np 167 (437)
T PRK05613 91 ASGQ-AAETAAILNLAG-AGDHIVT-SPRLYGGTETLFLVTLNRLGIEVTFVENPDDPESWQAAVQPNTKAFFGETFANP 167 (437)
T ss_pred CCHH-HHHHHHHHHhcC-CCCEEEE-CCCccHHHHHHHHHHHHhcCeEEEEECCCCCHHHHHHhCCccCeEEEEECCCCC
Confidence 3455 667766655432 2344544 466777653 466788898765 32212222222 22232 2445455533
Q ss_pred -------HHHHHHHHhcCC-eEEeCCChhhHHHHHHHHHHhhCCCeEEEEec
Q 022297 109 -------VEEMVTLNNKNV-QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGK 152 (299)
Q Consensus 109 -------~~v~~~l~~kgl-~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd 152 (299)
+++.+.++++|+ -|+|+|...-.- ++-. +-|-.++++.-
T Consensus 168 ~~~v~di~~I~~la~~~gi~livD~t~a~g~~-~~p~----~~GaDivv~S~ 214 (437)
T PRK05613 168 QADVLDIPAVAEVAHRNQVPLIVDNTIATAAL-VRPL----ELGADVVVASL 214 (437)
T ss_pred CCcccCHHHHHHHHHHcCCeEEEECCCccccc-cChH----HhCCCEEEeec
Confidence 566777888886 459999532111 2111 33666666654
No 190
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=21.34 E-value=8.7e+02 Score=24.67 Aligned_cols=67 Identities=12% Similarity=0.100 Sum_probs=38.6
Q ss_pred chHHHHHHhcCceeeeeceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEec
Q 022297 7 SDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (299)
Q Consensus 7 s~~~~~~~~~~~~~~~~~M~IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~ 83 (299)
.+.+++|++..-++ .+++++-....||..|.+|.+. ....+| .-....=+--|+|+..++ .++..|.
T Consensus 106 ~~~~~~~~~~~~~~---~i~~f~~~~Cp~Cp~~v~~~~~---~a~~~p-~i~~~~id~~~~~~~~~~---~~v~~VP 172 (515)
T TIGR03140 106 EGIIDRIRRLNGPL---HFETYVSLTCQNCPDVVQALNQ---MALLNP-NISHTMIDGALFQDEVEA---LGIQGVP 172 (515)
T ss_pred HHHHHHHHhcCCCe---EEEEEEeCCCCCCHHHHHHHHH---HHHhCC-CceEEEEEchhCHHHHHh---cCCcccC
Confidence 44555555544333 3678999999999977777644 333333 111223445577766654 4555443
No 191
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=21.31 E-value=4.5e+02 Score=24.51 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=32.5
Q ss_pred CCC-HHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCe-EEEEe
Q 022297 106 GAA-VEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYT-SIIHG 151 (299)
Q Consensus 106 Gvs-~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~-IVIiG 151 (299)
-++ .+.++.+++.+. +.=+.||-+....+.-+++.++||. |+.+.
T Consensus 41 ~i~~~efy~~l~~~~~-~p~TS~ps~~~~~~~f~~~~~~gyd~ii~i~ 87 (280)
T PF02645_consen 41 DISPEEFYEKLRESGE-IPKTSQPSPGEFEEAFEKLLEEGYDEIIVIT 87 (280)
T ss_dssp TSCHHHHHHHHHHTTS-EEEEE---HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CCCHHHHHHHHHhcCC-CceecCCCHHHHHHHHHHHHHCCCCeEEEEe
Confidence 344 455777766555 4459999999999999999999999 88776
No 192
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=21.30 E-value=1.7e+02 Score=27.18 Aligned_cols=28 Identities=18% Similarity=0.061 Sum_probs=21.7
Q ss_pred CCCEEEEcCCCC---CHHHHHHHHhcCCeEE
Q 022297 96 KGDVVVLPAFGA---AVEEMVTLNNKNVQIV 123 (299)
Q Consensus 96 ~g~~VIIRAHGv---s~~v~~~l~~kgl~VI 123 (299)
+-|.|+.++||. ...+...++..|+.++
T Consensus 53 ~~D~v~~~~~g~~ge~~~~~~~le~~gip~~ 83 (299)
T PRK14571 53 SFDVVFNVLHGTFGEDGTLQAILDFLGIRYT 83 (299)
T ss_pred CCCEEEEeCCCCCCCccHHHHHHHHcCCCcc
Confidence 347899999997 4666777777888876
No 193
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=21.22 E-value=3.3e+02 Score=19.70 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=35.6
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEec
Q 022297 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (299)
Q Consensus 25 M~IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~ 83 (299)
|+++-....++|.-++++++. . +-=|..=+|-=|+...+.|++.|...+.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~-------~--~i~~~~~di~~~~~~~~~~~~~g~~~vP 50 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEE-------H--GIAFEEINIDEQPEAIDYVKAQGFRQVP 50 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHH-------C--CCceEEEECCCCHHHHHHHHHcCCcccC
Confidence 456777888999988888762 1 2235555666688888999888876553
No 194
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=21.17 E-value=2.2e+02 Score=21.36 Aligned_cols=30 Identities=7% Similarity=0.074 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHhcCCeEEeCCChhhHHHH
Q 022297 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVW 134 (299)
Q Consensus 105 HGvs~~v~~~l~~kgl~VIDATCP~V~kv~ 134 (299)
-++.+..+..|+++|++|+.+.+.-+..+=
T Consensus 60 ~~iG~~~~~~L~~~gI~v~~~~~~~i~~~l 89 (94)
T PF02579_consen 60 GGIGEGAFRALKEAGIKVYQGAGGDIEEAL 89 (94)
T ss_dssp SCSCHHHHHHHHHTTSEEEESTSSBHHHHH
T ss_pred eCCCHHHHHHHHHCCCEEEEcCCCCHHHHH
Confidence 358999999999999999998776665544
No 195
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=21.11 E-value=2.2e+02 Score=22.69 Aligned_cols=56 Identities=18% Similarity=0.282 Sum_probs=35.1
Q ss_pred ccccchHHHHHHhcCceeeeeceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEe
Q 022297 3 QEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWIT 61 (299)
Q Consensus 3 ~~~~s~~~~~~~~~~~~~~~~~M~IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~Vytl 61 (299)
|.|=.++++.|++.|..+..++|.=.+-....=+|- +++.+.+++.+.+..+|++.
T Consensus 16 ~~~V~~~i~~i~~sgl~y~v~pm~T~iEGe~dev~~---~i~~~~e~~~~~G~~Rv~t~ 71 (92)
T PF01910_consen 16 SAYVAEAIEVIKESGLKYEVGPMGTTIEGELDEVMA---LIKEAHEALFEAGAKRVVTV 71 (92)
T ss_dssp HHHHHHHHHHHHTSSSEEEEETTEEEEEEEHHHHHH---HHHHHHHHHHCTTSSEEEEE
T ss_pred HHHHHHHHHHHHHcCCceEEcCCccEEEecHHHHHH---HHHHHHHHHHHcCCCeEEEE
Confidence 356678899999999999999996555444444443 33334444443323456654
No 196
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.06 E-value=1.5e+02 Score=28.49 Aligned_cols=67 Identities=10% Similarity=0.072 Sum_probs=38.9
Q ss_pred ceeEEEEccccC--hHHHHHHHHHHHHHhhhccCccc-hh----------hhHHhhcCCceEEEEEcCCCCCcchhHhhh
Q 022297 218 VKVGIANQTTML--KGETEEIGKLVEKTMMRKFGVEN-MQ----------CIRWLRKRSILSWLLVGGTRAIPHTFKRLQ 284 (299)
Q Consensus 218 ~kv~Iv~QTT~~--~~~~~~i~~~l~~~~~~~~g~~~-~~----------ei~~l~~~~vd~~lvvG~~~s~~~~~~~~~ 284 (299)
.+++|+..+.-. .+.++++.++|++.....+-.+. .. +...+ .+.+|+++++||=-.-.+++..+.
T Consensus 6 ~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~lGGDGT~L~aa~~~~ 84 (292)
T PRK03378 6 KCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEI-GQQADLAIVVGGDGNMLGAARVLA 84 (292)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhc-CCCCCEEEEECCcHHHHHHHHHhc
Confidence 468888765432 33355666666554443332111 11 11222 457899999999888877776665
Q ss_pred h
Q 022297 285 K 285 (299)
Q Consensus 285 ~ 285 (299)
.
T Consensus 85 ~ 85 (292)
T PRK03378 85 R 85 (292)
T ss_pred C
Confidence 4
No 197
>PF00572 Ribosomal_L13: Ribosomal protein L13; InterPro: IPR005822 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L13 is one of the proteins from the large ribosomal subunit []. In Escherichia coli, L13 is known to be one of the early assembly proteins of the 50S ribosomal subunit.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 4A17_I 4A1E_I 4A1A_I 4A1C_I 3D5B_N 3MS1_J 1VSP_H 3PYT_J 3PYO_J 3PYV_J ....
Probab=21.00 E-value=1.5e+02 Score=25.29 Aligned_cols=31 Identities=6% Similarity=0.101 Sum_probs=26.2
Q ss_pred eEEeCCChhhHHHHHHHHHHhh------------CCCeEEEEe
Q 022297 121 QIVDTTCPWVSKVWTSVEKHKK------------GDYTSIIHG 151 (299)
Q Consensus 121 ~VIDATCP~V~kv~~~v~~~~~------------~GY~IVIiG 151 (299)
.||||+.-..-++-..|+++.. .|..||||-
T Consensus 2 ~viDA~~~~lGRLAs~iAk~L~GKhk~~y~p~~d~Gd~VvViN 44 (128)
T PF00572_consen 2 YVIDAKGQILGRLASKIAKLLLGKHKPTYTPNVDCGDHVVVIN 44 (128)
T ss_dssp EEEETTTBBHHHHHHHHHHHHCTTSSTSSBTTSSTTEEEEEEC
T ss_pred EEEeCCCCchHHHHHHHHHHHhCCCCCccCcCccCCCEEEEEc
Confidence 4899999999999999999888 777777764
No 198
>PF01515 PTA_PTB: Phosphate acetyl/butaryl transferase; InterPro: IPR002505 This entry contains both phosphate acetyltransferase 2.3.1.8 from EC: Acetyl-CoA + phosphate = CoA + acetyl phosphate and phosphate butaryltransferase 2.3.1.19 from EC: Butanoyl-CoA + phosphate = CoA + butanoyl phosphate These enzymes catalyse the transfer of an acetyl or butaryl group to orthophosphate.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 2AF3_D 1QZT_D 2AF4_D 1VMI_A 3UF6_B 3U9E_A 3TNG_A 4E4R_A 1R5J_A 1YCO_A ....
Probab=20.96 E-value=6.2e+02 Score=24.62 Aligned_cols=68 Identities=12% Similarity=0.036 Sum_probs=36.0
Q ss_pred eeEEEEccccChHHHHHHHHHHHHHhhhc-cCccchhhh---------HHhhcCCceEEEEEcCCCCCcchhHhhhhccc
Q 022297 219 KVGIANQTTMLKGETEEIGKLVEKTMMRK-FGVENMQCI---------RWLRKRSILSWLLVGGTRAIPHTFKRLQKTVE 288 (299)
Q Consensus 219 kv~Iv~QTT~~~~~~~~i~~~l~~~~~~~-~g~~~~~ei---------~~l~~~~vd~~lvvG~~~s~~~~~~~~~~~~~ 288 (299)
.+-|++-.+.. .+++.++.+-+...++ ...+.+++. ..++.+++|.|+ -|..+|..+.++-+.+.+.
T Consensus 64 ~~eIid~~~~~--~~~~y~~~~~~lr~rKG~~~~~a~~~~~~~~~~a~~mv~~G~aD~lv-~G~~~t~~~~lr~~l~~~~ 140 (319)
T PF01515_consen 64 GFEIIDPEDSE--KLEEYAEEYYELRQRKGMTPEEARREVRDPNYFAAMMVRLGDADALV-KGLIHTTADMLRAVLQVIG 140 (319)
T ss_dssp TSEEE-TTTST--THHHHHHHHHHHHTTCTS-HHHHHHHTTSHHHHHHHHHHTTSSSEEE-E-SSSHHHHHHHHHHHHTC
T ss_pred cceecCccccH--HHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHcCCCCEEe-cCCCCCHHHHHHHHHHHHc
Confidence 45666655543 2344444443333332 333333332 388999999875 6777666666665555544
Q ss_pred c
Q 022297 289 F 289 (299)
Q Consensus 289 ~ 289 (299)
.
T Consensus 141 ~ 141 (319)
T PF01515_consen 141 G 141 (319)
T ss_dssp B
T ss_pred c
Confidence 3
No 199
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=20.96 E-value=1.7e+02 Score=31.97 Aligned_cols=48 Identities=25% Similarity=0.244 Sum_probs=42.3
Q ss_pred CcccHHHHHHHHHHHHhhCCCCceEEeecccc-CHHHHHHHHhcCcEEec
Q 022297 35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIH-NPTVNKRLEEMAVQNIP 83 (299)
Q Consensus 35 FC~GVkRAV~~a~~~~~~~~~~~VytlG~LIH-N~~Vv~~L~~~GV~~v~ 83 (299)
+-..|.+||+.+.++.++. ++++-+.|++-. +|.....|-++|+.++.
T Consensus 716 ~hPaV~~~i~~vi~~a~~~-g~~vgicge~~~~~p~~~~~l~~~G~~~ls 764 (782)
T TIGR01418 716 RNPAVLRLIEMAIKAAKEH-GKKVGICGQAPSDYPEVVEFLVEEGIDSIS 764 (782)
T ss_pred CCHHHHHHHHHHHHHHHhc-CCeEEEeCCCCCCCHHHHHHHHHcCCCEEE
Confidence 5578999999999888764 578999999998 89999999999999875
No 200
>TIGR01508 rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal. in riboflavin biosynthesis is reduced first, and then deaminated, in both Archaea and Fungi, opposite the order in Bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain (3.5.4.26) fused to the reductase domain (1.1.1.193) similar to this protein but found in most bacteria.
Probab=20.83 E-value=2.3e+02 Score=25.39 Aligned_cols=109 Identities=11% Similarity=0.107 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhhCCCCceEEeec-cccCHHHHHHHHh---cCcEEecCCc-cccccccc-c-CCCEEEEcCCCCCHHHH
Q 022297 40 ERAVQIAYEARKQFPEEKIWITNE-IIHNPTVNKRLEE---MAVQNIPVEE-GKKQFDVV-N-KGDVVVLPAFGAAVEEM 112 (299)
Q Consensus 40 kRAV~~a~~~~~~~~~~~VytlG~-LIHN~~Vv~~L~~---~GV~~v~~~~-~~~~~~ei-~-~g~~VIIRAHGvs~~v~ 112 (299)
..|-..+.+...+. +.-+.--|- +.+||...-++.+ .-+.+|-+.. +...-..+ . ...++|+.+-..+++..
T Consensus 27 ~~~r~~~h~lRa~~-DaIlvG~~Tv~~D~P~L~~r~~~~~~~P~rvVld~~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~ 105 (210)
T TIGR01508 27 EEDLIRVHEIRAEV-DAIMVGIGTVLADDPRLTVKKIKSDRNPVRVVVDSKLRVPLNARILNKDAKTIIATSEDEPEEKV 105 (210)
T ss_pred HHHHHHHHHHHHHC-CEEEECcCeEEecCCcccccCcccCCCCEEEEECCCCCCCCcchhhcCCCCEEEEEcCCCCHHHH
Confidence 45566666655543 221111222 3477777666542 2244443211 11000011 1 13567787777788878
Q ss_pred HHHHhcCCeEEeCCChhh-HHHHHHHHHHhhCCCeEEEE-e
Q 022297 113 VTLNNKNVQIVDTTCPWV-SKVWTSVEKHKKGDYTSIIH-G 151 (299)
Q Consensus 113 ~~l~~kgl~VIDATCP~V-~kv~~~v~~~~~~GY~IVIi-G 151 (299)
+.++++|+.++. |+-- -......+++.++|+.-|++ |
T Consensus 106 ~~l~~~gv~vi~--~~~~~~dl~~~l~~L~~~g~~~vlveG 144 (210)
T TIGR01508 106 EELEDKGVEVVK--FGEGRVDLKKLLDILYDKGVRRLMVEG 144 (210)
T ss_pred HHHHHCCCEEEE--eCCCCcCHHHHHHHHHHCCCCEEEEee
Confidence 888899999874 3211 13455667777788766555 5
No 201
>PRK08562 rpl32e 50S ribosomal protein L32e; Validated
Probab=20.51 E-value=1.4e+02 Score=25.69 Aligned_cols=26 Identities=8% Similarity=0.096 Sum_probs=20.0
Q ss_pred EEcCCCCC----HHHHHHHHhcCCeEEeCC
Q 022297 101 VLPAFGAA----VEEMVTLNNKNVQIVDTT 126 (299)
Q Consensus 101 IIRAHGvs----~~v~~~l~~kgl~VIDAT 126 (299)
+-=||.|+ .++.+.|++.|+.|.+++
T Consensus 95 a~Ia~~Vg~rKR~~I~~rA~el~ikV~N~~ 124 (125)
T PRK08562 95 ARIASTVGKRKRLEILKKARELGIKVLNPG 124 (125)
T ss_pred EEEeccccchhHHHHHHHHHHhCCcccCCC
Confidence 34488888 567889999999987653
No 202
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=20.51 E-value=1.8e+02 Score=26.96 Aligned_cols=65 Identities=14% Similarity=0.090 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHhhhccCccchhhh-HHhhcCCceEEEEE-cCCCCCcchhHhhhhccccCCccc
Q 022297 230 KGETEEIGKLVEKTMMRKFGVENMQCI-RWLRKRSILSWLLV-GGTRAIPHTFKRLQKTVEFPHTGS 294 (299)
Q Consensus 230 ~~~~~~i~~~l~~~~~~~~g~~~~~ei-~~l~~~~vd~~lvv-G~~~s~~~~~~~~~~~~~~~~~~~ 294 (299)
......+.++|++..-...-...-+++ +++....+|+++.. +|..+.+..+..+-.....|++|+
T Consensus 22 ~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~~gi~~~g~ 88 (304)
T PRK01372 22 LNSGAAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNALHGRGGEDGTIQGLLELLGIPYTGS 88 (304)
T ss_pred HHhHHHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEecCCCCCCccHHHHHHHHcCCCccCC
Confidence 345578888887776665433222222 45556679999875 455556666777777778899887
No 203
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=20.44 E-value=3.6e+02 Score=23.66 Aligned_cols=82 Identities=9% Similarity=0.003 Sum_probs=53.6
Q ss_pred EEEcCCCCCHHHHHHHHhcCCe-EEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccCCeEEEEcC-hhhH
Q 022297 100 VVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKN-MKEA 177 (299)
Q Consensus 100 VIIRAHGvs~~v~~~l~~kgl~-VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~~~~~vv~~-~~e~ 177 (299)
+.|=+-+-.+.+...++..|+. +.+...|.-.-++..++++.-..-.++.|||.. .-+.+.. .++-.+.+.+ .+++
T Consensus 53 laIiT~k~~~~~~~~l~~lgi~~~f~~~kpkp~~~~~~~~~l~~~~~ev~~iGD~~-nDi~~~~-~ag~~~am~nA~~~l 130 (169)
T TIGR02726 53 VAIITSKKSGAVRHRAEELKIKRFHEGIKKKTEPYAQMLEEMNISDAEVCYVGDDL-VDLSMMK-RVGLAVAVGDAVADV 130 (169)
T ss_pred EEEEECCCcHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHHcCcCHHHEEEECCCH-HHHHHHH-HCCCeEECcCchHHH
Confidence 4444555677788888888885 678888888888888888866667899999986 3444332 2333344433 4555
Q ss_pred Hhhhhh
Q 022297 178 EYVCDY 183 (299)
Q Consensus 178 ~~l~~~ 183 (299)
...++|
T Consensus 131 k~~A~~ 136 (169)
T TIGR02726 131 KEAAAY 136 (169)
T ss_pred HHhCCE
Confidence 554433
No 204
>PRK13054 lipid kinase; Reviewed
Probab=20.41 E-value=2.2e+02 Score=26.77 Aligned_cols=65 Identities=14% Similarity=0.035 Sum_probs=40.1
Q ss_pred eEEEEccccChHHHHHHHHHHHHHhhhc-----cCccchhhh-HHhhcCCceEEEEEcCCCCCcchhHhhh
Q 022297 220 VGIANQTTMLKGETEEIGKLVEKTMMRK-----FGVENMQCI-RWLRKRSILSWLLVGGTRAIPHTFKRLQ 284 (299)
Q Consensus 220 v~Iv~QTT~~~~~~~~i~~~l~~~~~~~-----~g~~~~~ei-~~l~~~~vd~~lvvG~~~s~~~~~~~~~ 284 (299)
..|+|...-....+.++...|++....+ ..+..+.++ ++..+...|.++++||=-+.|.-..-|.
T Consensus 7 ~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~ 77 (300)
T PRK13054 7 LLILNGKSAGNEELREAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGTINEVATALA 77 (300)
T ss_pred EEEECCCccchHHHHHHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHHHH
Confidence 3556665545566777777666554331 111222333 3444567899999999998888877765
No 205
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=20.33 E-value=2.9e+02 Score=28.49 Aligned_cols=41 Identities=10% Similarity=0.040 Sum_probs=25.7
Q ss_pred HHHHhcCC-eEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCC
Q 022297 113 VTLNNKNV-QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSH 155 (299)
Q Consensus 113 ~~l~~kgl-~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~H 155 (299)
..+++.|+ .+.+...|. .| ...++++.++|..++.+||.-+
T Consensus 395 ~i~~~lgi~~~f~~~~p~-~K-~~~i~~l~~~~~~v~~vGDg~n 436 (536)
T TIGR01512 395 RVARELGIDEVHAELLPE-DK-LEIVKELREKYGPVAMVGDGIN 436 (536)
T ss_pred HHHHHcCChhhhhccCcH-HH-HHHHHHHHhcCCEEEEEeCCHH
Confidence 33444444 233444454 22 4578888889999999998644
No 206
>TIGR00184 purA adenylosuccinate synthase. Alternate name IMP--aspartate ligase.
Probab=20.29 E-value=1.3e+02 Score=30.84 Aligned_cols=35 Identities=11% Similarity=0.056 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHhcCCeEEeCCCh--hhHHHHHHHH
Q 022297 104 AFGAAVEEMVTLNNKNVQIVDTTCP--WVSKVWTSVE 138 (299)
Q Consensus 104 AHGvs~~v~~~l~~kgl~VIDATCP--~V~kv~~~v~ 138 (299)
--|+.|...+++...|+++.|.-.| |-.|+.....
T Consensus 126 ~rGIGPaY~dK~~R~giR~~Dl~~~~~~~~kl~~~~~ 162 (425)
T TIGR00184 126 GKGIGPAYEDKVARSGLRVGDLLDDEAFAEKAKNILE 162 (425)
T ss_pred CCCcHHHHHHHhhccccchhhhcCHHHHHHHHHHHHH
Confidence 3478899999999999999999999 5566655443
No 207
>PRK00124 hypothetical protein; Validated
Probab=20.26 E-value=1.8e+02 Score=25.62 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=22.4
Q ss_pred eEEeC-CChhhHHHHHHHHHHhhCCCeEEEEecCCCc
Q 022297 121 QIVDT-TCPWVSKVWTSVEKHKKGDYTSIIHGKYSHE 156 (299)
Q Consensus 121 ~VIDA-TCP~V~kv~~~v~~~~~~GY~IVIiGd~~HP 156 (299)
.+||| .||...-+.+.++ +-|-.++++-+-||+
T Consensus 3 I~VDADACPVk~~i~r~a~---r~~i~v~~Vas~n~~ 36 (151)
T PRK00124 3 IYVDADACPVKDIIIRVAE---RHGIPVTLVASFNHF 36 (151)
T ss_pred EEEECCCCcHHHHHHHHHH---HHCCeEEEEEeCCcc
Confidence 35887 6994444444443 348899999988887
No 208
>PRK10537 voltage-gated potassium channel; Provisional
Probab=20.12 E-value=2e+02 Score=28.83 Aligned_cols=75 Identities=16% Similarity=0.229 Sum_probs=50.0
Q ss_pred CCCEEEEcCCCCCHHHHHHHHhcCCe--EEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccC-CeEEEEc
Q 022297 96 KGDVVVLPAFGAAVEEMVTLNNKNVQ--IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA-GKYIIVK 172 (299)
Q Consensus 96 ~g~~VIIRAHGvs~~v~~~l~~kgl~--VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~-~~~~vv~ 172 (299)
++-+||+-.--+...+.++|+++|.. |||-- ..++..++|+. ++.||+.++|+--=.|-. .+++++.
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d---------~~~~~~~~g~~-vI~GD~td~e~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPL---------GLEHRLPDDAD-LIPGDSSDSAVLKKAGAARARAILAL 309 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECc---------hhhhhccCCCc-EEEeCCCCHHHHHhcCcccCCEEEEc
Confidence 34567888888889999999988765 46632 23455567876 689999999886443322 2456665
Q ss_pred ChhhHHhh
Q 022297 173 NMKEAEYV 180 (299)
Q Consensus 173 ~~~e~~~l 180 (299)
..+|.+.+
T Consensus 310 t~dD~~Nl 317 (393)
T PRK10537 310 RDNDADNA 317 (393)
T ss_pred CCChHHHH
Confidence 55555543
Done!