Query 022297
Match_columns 299
No_of_seqs 146 out of 960
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 03:11:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022297.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022297hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3szu_A ISPH, 4-hydroxy-3-methy 100.0 2.8E-71 9.6E-76 527.2 21.2 221 22-285 10-245 (328)
2 3dnf_A ISPH, LYTB, 4-hydroxy-3 100.0 3.7E-71 1.2E-75 520.7 20.4 215 24-286 1-230 (297)
3 3dnf_A ISPH, LYTB, 4-hydroxy-3 95.9 0.23 7.8E-06 46.7 15.1 171 35-243 95-281 (297)
4 3szu_A ISPH, 4-hydroxy-3-methy 95.4 0.24 8.3E-06 47.2 13.7 174 36-244 108-298 (328)
5 3d8t_A Uroporphyrinogen-III sy 88.7 13 0.00043 33.2 15.0 117 6-127 44-187 (286)
6 2xdq_A Light-independent proto 82.6 25 0.00087 33.6 14.1 82 57-141 198-287 (460)
7 1wcw_A Uroporphyrinogen III sy 81.8 25 0.00085 30.4 14.5 139 6-149 19-188 (261)
8 1s3l_A Hypothetical protein MJ 80.7 7.4 0.00025 32.9 8.6 112 18-159 18-152 (190)
9 3jx9_A Putative phosphoheptose 75.0 9.3 0.00032 32.7 7.6 76 39-123 24-108 (170)
10 3o3m_B Beta subunit 2-hydroxya 74.3 2.1 7.1E-05 40.7 3.5 53 32-84 198-258 (385)
11 3mw8_A Uroporphyrinogen-III sy 71.7 15 0.00051 31.6 8.2 116 4-124 11-148 (240)
12 3qha_A Putative oxidoreductase 70.4 13 0.00044 33.3 7.8 62 221-287 100-161 (296)
13 3aek_A Light-independent proto 70.1 31 0.0011 33.0 10.9 104 25-130 149-261 (437)
14 1jr2_A Uroporphyrinogen-III sy 63.3 41 0.0014 29.8 9.6 115 7-126 38-187 (286)
15 3mmz_A Putative HAD family hyd 63.0 27 0.00091 28.5 7.7 67 70-155 47-113 (176)
16 2kkn_A Uncharacterized protein 62.1 26 0.00088 29.1 7.6 83 56-159 52-143 (178)
17 4es6_A Uroporphyrinogen-III sy 60.5 24 0.00083 30.6 7.4 117 5-126 17-163 (254)
18 3re1_A Uroporphyrinogen-III sy 56.5 33 0.0011 30.2 7.6 117 5-126 25-171 (269)
19 3ff4_A Uncharacterized protein 53.0 23 0.00078 28.4 5.4 31 100-131 86-116 (122)
20 3eag_A UDP-N-acetylmuramate:L- 51.9 44 0.0015 30.3 7.9 64 56-124 29-95 (326)
21 2a22_A Vacuolar protein sortin 51.7 39 0.0013 28.6 7.1 29 56-85 57-87 (215)
22 3obb_A Probable 3-hydroxyisobu 49.4 1.1E+02 0.0039 27.5 10.2 93 45-148 18-119 (300)
23 4a7p_A UDP-glucose dehydrogena 49.1 59 0.002 31.4 8.7 64 221-287 124-193 (446)
24 2vhw_A Alanine dehydrogenase; 48.7 95 0.0033 28.9 9.8 43 90-132 81-132 (377)
25 2p9j_A Hypothetical protein AQ 48.7 56 0.0019 25.5 7.1 74 68-161 42-116 (162)
26 2h1v_A Ferrochelatase; rossman 48.0 49 0.0017 30.3 7.5 92 36-143 119-210 (310)
27 4gwg_A 6-phosphogluconate dehy 47.9 80 0.0027 31.0 9.5 135 135-287 18-158 (484)
28 3p9z_A Uroporphyrinogen III co 47.9 22 0.00076 30.6 4.9 83 36-123 42-137 (229)
29 1y81_A Conserved hypothetical 47.4 33 0.0011 27.6 5.6 34 100-133 97-130 (138)
30 2cc0_A Acetyl-xylan esterase; 46.4 1.3E+02 0.0043 25.0 9.8 95 39-153 77-185 (195)
31 3hcn_A Ferrochelatase, mitocho 46.2 1.1E+02 0.0039 28.8 10.0 92 36-143 132-226 (359)
32 3pef_A 6-phosphogluconate dehy 44.9 65 0.0022 28.2 7.6 130 134-288 14-152 (287)
33 4gbj_A 6-phosphogluconate dehy 44.4 63 0.0021 29.1 7.6 93 45-148 20-119 (297)
34 4dll_A 2-hydroxy-3-oxopropiona 44.0 59 0.002 29.3 7.4 62 221-287 119-180 (320)
35 3cl6_A PUUE allantoinase; URIC 43.4 1E+02 0.0035 27.6 8.9 82 37-119 77-180 (308)
36 3gg2_A Sugar dehydrogenase, UD 42.6 60 0.002 31.2 7.5 66 220-288 116-191 (450)
37 4e21_A 6-phosphogluconate dehy 42.6 58 0.002 30.4 7.3 60 221-286 110-169 (358)
38 1x92_A APC5045, phosphoheptose 42.6 1.1E+02 0.0038 25.0 8.4 38 94-131 111-152 (199)
39 2d59_A Hypothetical protein PH 40.7 1.4E+02 0.0047 23.8 10.2 62 103-165 6-69 (144)
40 1k1e_A Deoxy-D-mannose-octulos 40.3 95 0.0032 24.9 7.5 76 66-161 39-115 (180)
41 2yva_A DNAA initiator-associat 37.7 1.6E+02 0.0054 23.9 8.5 38 94-131 107-148 (196)
42 2i5i_A UPF0249 protein EF_3048 37.3 16 0.00056 32.8 2.4 46 24-75 4-53 (263)
43 1lbq_A Ferrochelatase; rossman 37.2 1.2E+02 0.004 28.7 8.5 70 58-143 162-231 (362)
44 3doj_A AT3G25530, dehydrogenas 36.9 82 0.0028 28.1 7.1 136 134-288 34-172 (310)
45 2k1g_A Lipoprotein SPR; soluti 36.2 17 0.00057 29.9 2.1 76 1-104 1-78 (135)
46 3hn7_A UDP-N-acetylmuramate-L- 35.9 86 0.0029 30.6 7.6 92 20-123 15-108 (524)
47 2j13_A Polysaccharide deacetyl 35.6 2E+02 0.0068 25.1 9.3 26 58-83 150-175 (247)
48 3pdu_A 3-hydroxyisobutyrate de 35.4 62 0.0021 28.4 5.9 62 221-287 90-151 (287)
49 1ny1_A Probable polysaccharide 35.4 1.8E+02 0.0063 25.0 8.9 26 58-83 138-163 (240)
50 2p4q_A 6-phosphogluconate dehy 35.2 1.5E+02 0.0052 28.8 9.2 61 221-287 104-164 (497)
51 2qv5_A AGR_C_5032P, uncharacte 34.7 60 0.0021 29.5 5.8 71 68-159 145-224 (261)
52 2y8u_A Chitin deacetylase; hyd 34.6 2.1E+02 0.007 24.7 9.1 26 58-83 126-151 (230)
53 2fi0_A Conserved domain protei 34.3 4.8 0.00016 30.1 -1.4 60 61-124 15-79 (81)
54 2zyd_A 6-phosphogluconate dehy 33.6 1.7E+02 0.0059 28.2 9.2 79 194-287 90-168 (480)
55 3ij5_A 3-deoxy-D-manno-octulos 33.3 1.3E+02 0.0043 25.5 7.4 67 70-155 84-151 (211)
56 3umf_A Adenylate kinase; rossm 32.8 8.4 0.00029 33.8 -0.3 34 265-298 30-66 (217)
57 2h78_A Hibadh, 3-hydroxyisobut 32.4 80 0.0027 27.7 6.2 136 134-288 16-154 (302)
58 3trj_A Phosphoheptose isomeras 32.3 2.2E+02 0.0076 23.8 9.0 75 39-116 32-135 (201)
59 3gnh_A L-lysine, L-arginine ca 31.9 2E+02 0.0069 25.5 8.8 94 34-129 161-270 (403)
60 1vb5_A Translation initiation 31.7 57 0.002 29.5 5.1 58 94-154 107-170 (276)
61 3mn1_A Probable YRBI family ph 31.6 1.7E+02 0.0058 23.8 7.7 67 70-155 54-121 (189)
62 4dpk_A Malonyl-COA/succinyl-CO 30.9 47 0.0016 31.2 4.6 31 98-129 81-113 (359)
63 4dpl_A Malonyl-COA/succinyl-CO 30.9 47 0.0016 31.2 4.6 31 98-129 81-113 (359)
64 1jeo_A MJ1247, hypothetical pr 30.1 2.1E+02 0.0072 22.8 8.7 34 94-127 80-117 (180)
65 3n07_A 3-deoxy-D-manno-octulos 29.4 2E+02 0.0069 23.9 7.9 65 71-154 61-126 (195)
66 2xvy_A Chelatase, putative; me 29.0 1.7E+02 0.0059 25.4 7.7 45 57-109 114-158 (269)
67 3l6d_A Putative oxidoreductase 28.1 70 0.0024 28.6 5.0 129 134-288 22-158 (306)
68 4g85_A Histidine-tRNA ligase, 28.1 2.7E+02 0.0091 26.9 9.6 42 109-153 436-480 (517)
69 2e67_A Hypothetical protein TT 27.7 27 0.00092 31.4 2.2 23 24-46 12-35 (264)
70 3f4w_A Putative hexulose 6 pho 27.4 2.6E+02 0.0089 23.0 9.8 49 98-150 79-133 (211)
71 2k6g_A Replication factor C su 27.0 2E+02 0.0067 22.5 6.9 62 55-125 35-98 (109)
72 2yv1_A Succinyl-COA ligase [AD 26.9 3.5E+02 0.012 24.3 9.9 34 219-252 96-129 (294)
73 3etn_A Putative phosphosugar i 26.8 2.6E+02 0.0088 23.6 8.3 91 39-131 44-147 (220)
74 3dfz_A SIRC, precorrin-2 dehyd 26.7 3.2E+02 0.011 23.8 9.1 90 5-108 12-102 (223)
75 2obb_A Hypothetical protein; s 26.5 88 0.003 25.6 5.0 49 109-158 30-78 (142)
76 2y0c_A BCEC, UDP-glucose dehyd 26.5 2E+02 0.0069 27.7 8.3 66 222-288 124-201 (478)
77 3tn4_A Phosphotriesterase; lac 25.8 4.1E+02 0.014 24.8 12.5 120 17-153 170-301 (360)
78 3obb_A Probable 3-hydroxyisobu 25.8 65 0.0022 29.2 4.4 63 220-287 91-153 (300)
79 1oi7_A Succinyl-COA synthetase 25.4 3.3E+02 0.011 24.3 9.1 34 219-252 90-123 (288)
80 3sho_A Transcriptional regulat 24.7 1.4E+02 0.005 23.9 6.0 38 94-131 85-126 (187)
81 3fxa_A SIS domain protein; str 24.5 2.6E+02 0.009 22.8 7.7 39 93-131 89-131 (201)
82 2yv2_A Succinyl-COA synthetase 24.3 3.8E+02 0.013 24.1 9.3 34 219-252 97-130 (297)
83 4dll_A 2-hydroxy-3-oxopropiona 24.2 3.8E+02 0.013 23.8 10.0 82 56-147 55-145 (320)
84 1pg5_A Aspartate carbamoyltran 24.1 1E+02 0.0034 28.5 5.4 58 97-155 95-160 (299)
85 1vpq_A Hypothetical protein TM 24.0 69 0.0023 29.0 4.2 49 60-109 156-209 (273)
86 1iuk_A Hypothetical protein TT 24.0 1.3E+02 0.0045 23.9 5.5 36 100-135 98-133 (140)
87 3pdu_A 3-hydroxyisobutyrate de 23.9 2.3E+02 0.0079 24.5 7.6 82 56-147 25-116 (287)
88 4hv4_A UDP-N-acetylmuramate--L 23.8 1.2E+02 0.0041 29.3 6.1 61 56-123 47-109 (494)
89 3tqv_A Nicotinate-nucleotide p 23.7 2.4E+02 0.0082 26.0 7.9 96 24-126 170-270 (287)
90 3qbu_A Putative uncharacterize 23.6 1.8E+02 0.0063 26.2 7.1 90 38-128 71-183 (326)
91 4g84_A Histidine--tRNA ligase, 23.4 3E+02 0.01 25.7 8.8 42 109-153 383-427 (464)
92 1z2w_A Vacuolar protein sortin 22.9 1.2E+02 0.0041 24.8 5.2 83 56-159 42-132 (192)
93 1uf3_A Hypothetical protein TT 22.9 1.2E+02 0.0042 24.5 5.2 23 56-78 34-63 (228)
94 3sds_A Ornithine carbamoyltran 22.8 92 0.0031 29.5 4.9 58 97-155 122-199 (353)
95 4ekn_B Aspartate carbamoyltran 22.7 1.7E+02 0.0059 27.0 6.7 59 97-156 97-163 (306)
96 1vim_A Hypothetical protein AF 22.6 3.2E+02 0.011 22.4 8.3 34 94-127 87-124 (200)
97 1iuk_A Hypothetical protein TT 22.5 2.5E+02 0.0085 22.2 7.0 28 222-252 98-125 (140)
98 1y81_A Conserved hypothetical 21.8 3E+02 0.01 21.7 9.1 29 221-252 96-124 (138)
99 3ic5_A Putative saccharopine d 21.3 2.3E+02 0.0078 20.2 10.0 94 24-127 5-101 (118)
100 3u7q_B Nitrogenase molybdenum- 21.2 2.6E+02 0.009 27.4 8.1 58 26-83 180-253 (523)
101 3fwz_A Inner membrane protein 21.2 1.7E+02 0.0058 22.6 5.5 73 97-177 8-83 (140)
102 2xbl_A Phosphoheptose isomeras 21.2 3.2E+02 0.011 21.9 8.6 22 94-115 114-136 (198)
103 2jyx_A Lipoprotein SPR; soluti 21.1 39 0.0013 27.2 1.7 76 1-104 1-78 (136)
104 1tk9_A Phosphoheptose isomeras 20.9 3.2E+02 0.011 21.7 8.1 35 94-128 108-146 (188)
105 1mv8_A GMD, GDP-mannose 6-dehy 20.7 2.9E+02 0.01 25.8 8.1 61 221-286 118-190 (436)
106 3bio_A Oxidoreductase, GFO/IDH 20.7 1E+02 0.0034 27.7 4.6 67 94-161 63-133 (304)
107 3abi_A Putative uncharacterize 20.6 2.4E+02 0.0084 25.6 7.3 102 23-137 15-121 (365)
108 1fy2_A Aspartyl dipeptidase; s 20.5 1.8E+02 0.0063 25.0 6.1 68 68-151 51-118 (229)
109 1bax_A M-PMV MA, M-PMV matrix 20.4 26 0.00088 27.6 0.5 21 110-130 14-45 (94)
110 3csu_A Protein (aspartate carb 20.3 1.5E+02 0.005 27.6 5.7 58 97-155 99-165 (310)
111 1ml4_A Aspartate transcarbamoy 20.3 1.1E+02 0.0039 28.3 4.9 59 97-156 101-167 (308)
112 2lkc_A Translation initiation 20.1 93 0.0032 24.0 3.8 35 120-154 83-117 (178)
113 3r7f_A Aspartate carbamoyltran 20.1 1.6E+02 0.0055 27.2 5.9 60 98-158 94-161 (304)
114 1m3s_A Hypothetical protein YC 20.1 3.4E+02 0.011 21.7 8.7 35 94-128 77-115 (186)
115 2xz9_A Phosphoenolpyruvate-pro 20.0 1.3E+02 0.0043 28.0 5.2 47 36-83 229-275 (324)
No 1
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=100.00 E-value=2.8e-71 Score=527.23 Aligned_cols=221 Identities=24% Similarity=0.345 Sum_probs=199.4
Q ss_pred eeceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEE
Q 022297 22 WGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVV 101 (299)
Q Consensus 22 ~~~M~IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VI 101 (299)
-|.|.|++|+++||||||+|||++|+++++++ +.+||++|||||||+|+++|+++|+.++++ ++++++|++||
T Consensus 10 ~~~~~i~lA~~~GFC~GV~RAI~~ae~al~~~-~~~iy~~g~IVHN~~Vv~~L~~~Gv~~ve~------l~ev~~g~~VI 82 (328)
T 3szu_A 10 HGSMQILLANPRGFCAGVDRAISIVENALAIY-GAPIYVRHEVVHNRYVVDSLRERGAIFIEQ------ISEVPDGAILI 82 (328)
T ss_dssp ---CEEEECSSCSCCHHHHHHHHHHHHHHHHH-CSCEEEESCSSSCHHHHHHHHHTTEEEESS------GGGSCTTCEEE
T ss_pred CCceEEEEeCCCCcCccHHHHHHHHHHHHHhc-CCCEEEeCCCccCHHHHHHHHHCCCEEecc------hhhCCCCCEEE
Confidence 47899999999999999999999999999876 458999999999999999999999999974 68889999999
Q ss_pred EcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccC--C--eEEEEcChhhH
Q 022297 102 LPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA--G--KYIIVKNMKEA 177 (299)
Q Consensus 102 IRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~--~--~~~vv~~~~e~ 177 (299)
|||||+||+++++|+++|++|||||||||+|+|++|++++++||+|||||+++||||+|++||+ + .+++|++++|+
T Consensus 83 irAHGv~~~v~~~a~~rgl~iiDATCP~V~Kvh~~v~~~~~~Gy~iiiiG~~~HpEV~G~~G~~~~~~g~~~vV~~~edv 162 (328)
T 3szu_A 83 FSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASRRGEESILIGHAGHPQVEGTMGQYSNPEGGMYLVESPDDV 162 (328)
T ss_dssp ECTTCCCHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHTCEEEEESCTTCHHHHHHHTTCCCTTSCEEEECSHHHH
T ss_pred EECCCCCHHHHHHHHHCCCEEEECCCcchHHHHHHHHHHHhCCCEEEEEccCCCceEEeecccccCCCCcEEEECCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 3 68999999999
Q ss_pred HhhhhhhccCccCCCCccHHHHHHHHHHhhcCCCCCCCCCceeEEEEccccChHHHHHHHHHHHHHhhhccCccchhhhH
Q 022297 178 EYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIR 257 (299)
Q Consensus 178 ~~l~~~~~~~q~~~tt~~~e~f~~~~~~~~~~~~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~~~ei~ 257 (299)
+.|. + .++.++++++||||+.++|++|+++|++.++...++. .++||
T Consensus 163 ~~l~-------------------------------~-~~~~kv~~vsQTT~s~~~~~~iv~~L~~r~p~i~~~~-~ntIC 209 (328)
T 3szu_A 163 WKLT-------------------------------V-KNEEKLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPR-KDDIC 209 (328)
T ss_dssp HHCC-------------------------------C-SCTTSEEEEECTTSCHHHHHHHHHHHHHHCTTCBCCS-SCSCC
T ss_pred HhCC-------------------------------c-CCCCeEEEEEecCCcHHHHHHHHHHHHHhCcccccCC-CCCcC
Confidence 8762 1 2346999999999999999999999999999988763 37774
Q ss_pred -----------HhhcCCceEEEEEcCCCCCcchhHhhhh
Q 022297 258 -----------WLRKRSILSWLLVGGTRAIPHTFKRLQK 285 (299)
Q Consensus 258 -----------~l~~~~vd~~lvvG~~~s~~~~~~~~~~ 285 (299)
.| ++.+|+||||||+||| |-+||..
T Consensus 210 ~AT~~RQ~av~~l-A~~vD~miVVGg~nSS--NT~rL~e 245 (328)
T 3szu_A 210 YATTNRQEAVRAL-AEQAEVVLVVGSKNSS--NSNRLAE 245 (328)
T ss_dssp HHHHHHHHHHHHH-HHHCSEEEEECCTTCH--HHHHHHH
T ss_pred HHHHHHHHHHHHH-HHhCCEEEEeCCCCCc--hHHHHHH
Confidence 67 7789999999999999 5567764
No 2
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=100.00 E-value=3.7e-71 Score=520.71 Aligned_cols=215 Identities=27% Similarity=0.426 Sum_probs=196.5
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEc
Q 022297 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLP 103 (299)
Q Consensus 24 ~M~IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIR 103 (299)
+|+|++|+++||||||+|||++|+++++++ +++||++|||||||+|+++|+++|+.++++ +++++|++||||
T Consensus 1 ~m~I~lA~~~GFC~GV~RAI~~a~~al~~~-~~~iy~~g~IVHN~~Vv~~L~~~Gv~~v~~-------~ev~~g~~VIir 72 (297)
T 3dnf_A 1 MVDIIIAEHAGFCFGVKRAVKLAEESLKES-QGKVYTLGPIIHNPQEVNRLKNLGVFPSQG-------EEFKEGDTVIIR 72 (297)
T ss_dssp CCEEEECTTCSSCHHHHHHHHHHHHHTTTC-CSCEEESSCSSSCHHHHHHHHHHTEEECCS-------SCCCTTCEEEEC
T ss_pred CeEEEEeCCCCCCccHHHHHHHHHHHHHhc-CCCEEEeCCcccCHHHHHHHHhCCCEEech-------hhCCCCCEEEEE
Confidence 499999999999999999999999999876 468999999999999999999999999974 677889999999
Q ss_pred CCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccC---C-eEEEEcChhhHHh
Q 022297 104 AFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA---G-KYIIVKNMKEAEY 179 (299)
Q Consensus 104 AHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~---~-~~~vv~~~~e~~~ 179 (299)
|||+||+++++|+++|++|||||||||+|+|++|++++++||+|||||+++||||+|++||+ + +++||++++|++.
T Consensus 73 AHGv~~~v~~~a~~rgl~iiDATCP~V~Kvh~~v~~~~~~Gy~iiiiG~~~HpEV~G~~g~~~~~~~~~~vV~~~ed~~~ 152 (297)
T 3dnf_A 73 SHGIPPEKEEALRKKGLKVIDATCPYVKAVHEAVCQLTREGYFVVLVGEKNHPEVIGTLGYLRACNGKGIVVETLEDIGE 152 (297)
T ss_dssp TTCCCHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHTTCCEEEESSGGGGGG
T ss_pred CCCCCHHHHHHHHHCCCEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCceEEeeccccccCCCcEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999 4 6899999999987
Q ss_pred hhhhhccCccCCCCccHHHHHHHHHHhhcCCCCCCCCCceeEEEEccccChHHHHHHHHHHHHHhhhccCccchhhhH--
Q 022297 180 VCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIR-- 257 (299)
Q Consensus 180 l~~~~~~~q~~~tt~~~e~f~~~~~~~~~~~~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~~~ei~-- 257 (299)
|+ +..++++++||||+.++|++|+++|++.++.. ...++||
T Consensus 153 l~----------------------------------~~~kv~~vsQTT~s~~~~~~iv~~L~~r~p~~---~~~~tIC~A 195 (297)
T 3dnf_A 153 AL----------------------------------KHERVGIVAQTTQNEEFFKEVVGEIALWVKEV---KVINTICNA 195 (297)
T ss_dssp GG----------------------------------GCSEEEEEECTTCCHHHHHHHHHHHHHHSSEE---EEECCCCSH
T ss_pred cC----------------------------------CCCcEEEEEecCCcHHHHHHHHHHHHHhCCCC---CCCCCccHH
Confidence 62 12699999999999999999999999988754 3567774
Q ss_pred ---------HhhcCCceEEEEEcCCCCCcchhHhhhhc
Q 022297 258 ---------WLRKRSILSWLLVGGTRAIPHTFKRLQKT 286 (299)
Q Consensus 258 ---------~l~~~~vd~~lvvG~~~s~~~~~~~~~~~ 286 (299)
.| ++.+|+||||||+||| |-+||...
T Consensus 196 T~~RQ~av~~l-a~~~D~miVVGg~nSS--NT~rL~ei 230 (297)
T 3dnf_A 196 TSLRQESVKKL-APEVDVMIIIGGKNSG--NTRRLYYI 230 (297)
T ss_dssp HHHHHHHHHHH-GGGSSEEEEESCTTCH--HHHHHHHH
T ss_pred HHHHHHHHHHH-HhhCCEEEEECCCCCc--hhHHHHHH
Confidence 77 7889999999999999 55677653
No 3
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=95.88 E-value=0.23 Score=46.71 Aligned_cols=171 Identities=16% Similarity=0.078 Sum_probs=125.6
Q ss_pred CcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHh-----cCcEEecCCccccccccccCCCEE-EEcCCCCC
Q 022297 35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEE-----MAVQNIPVEEGKKQFDVVNKGDVV-VLPAFGAA 108 (299)
Q Consensus 35 FC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~-----~GV~~v~~~~~~~~~~ei~~g~~V-IIRAHGvs 108 (299)
=|.=|.++=..+.+..++ +..|...|.==| |.|..-+-. -++.++++.++. +.++..+.+ ++.==-.+
T Consensus 95 TCP~V~Kvh~~v~~~~~~--Gy~iiiiG~~~H-pEV~G~~g~~~~~~~~~~vV~~~ed~---~~l~~~~kv~~vsQTT~s 168 (297)
T 3dnf_A 95 TCPYVKAVHEAVCQLTRE--GYFVVLVGEKNH-PEVIGTLGYLRACNGKGIVVETLEDI---GEALKHERVGIVAQTTQN 168 (297)
T ss_dssp CCHHHHHHHHHHHHHHHT--TCEEEEESCTTC-HHHHHHHHHHHHTTCCEEEESSGGGG---GGGGGCSEEEEEECTTCC
T ss_pred CCcchHHHHHHHHHHHhC--CCEEEEEecCCC-ceEEeeccccccCCCcEEEEcCHHHH---HhcCCCCcEEEEEecCCc
Confidence 377788888888887775 457999999888 888776522 357777765443 344433433 44433334
Q ss_pred ----HHHHHHHHhcC--CeEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccC----CeEEEEcChhhHH
Q 022297 109 ----VEEMVTLNNKN--VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAE 178 (299)
Q Consensus 109 ----~~v~~~l~~kg--l~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~----~~~~vv~~~~e~~ 178 (299)
.++.+.|+++. +.+.|+-|.-...=|..+++++++---+|+||.+|-.-..=+.--| ..++.|++.+|++
T Consensus 169 ~~~~~~iv~~L~~r~p~~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty~Ie~~~el~ 248 (297)
T 3dnf_A 169 EEFFKEVVGEIALWVKEVKVINTICNATSLRQESVKKLAPEVDVMIIIGGKNSGNTRRLYYISKELNPNTYHIETAEELQ 248 (297)
T ss_dssp HHHHHHHHHHHHHHSSEEEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTCHHHHHHHHHHHHHCSSEEEESSGGGCC
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCCchhHHHHHHHHhcCCCEEEeCChHHCC
Confidence 34566777764 5578999999999999999999999999999999987766554433 3589999999985
Q ss_pred hhhhhhccCccCCCCccHHHHHHHHHHhhcCCCCCCCCCceeEEEEccccChHHHHHHHHHHHHH
Q 022297 179 YVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKT 243 (299)
Q Consensus 179 ~l~~~~~~~q~~~tt~~~e~f~~~~~~~~~~~~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~l~~~ 243 (299)
.- |+ + ....+||++=++-+..-.+++++.|++.
T Consensus 249 ~~-------------------------wl----~---~~~~VGITAGASTP~~li~eVi~~l~~~ 281 (297)
T 3dnf_A 249 PE-------------------------WF----R---GVKRVGISAGASTPDWIIEQVKSRIQEI 281 (297)
T ss_dssp GG-------------------------GG----T---TCSEEEEEECTTCCHHHHHHHHHHHHHC
T ss_pred HH-------------------------Hh----C---CCCEEEEeecCCCCHHHHHHHHHHHHHh
Confidence 31 12 1 1258999999999999999999988764
No 4
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=95.45 E-value=0.24 Score=47.16 Aligned_cols=174 Identities=12% Similarity=0.142 Sum_probs=125.4
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhc-----CcEEecCCccccccccccCCCEEEEcCCCCC--
Q 022297 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM-----AVQNIPVEEGKKQFDVVNKGDVVVLPAFGAA-- 108 (299)
Q Consensus 36 C~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~-----GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs-- 108 (299)
|.=|.++=..+.+..++ +..|...|.==| |.|..-+-.- ++.++++.++.+.++.-.+....++.===.+
T Consensus 108 CP~V~Kvh~~v~~~~~~--Gy~iiiiG~~~H-pEV~G~~G~~~~~~g~~~vV~~~edv~~l~~~~~~kv~~vsQTT~s~~ 184 (328)
T 3szu_A 108 CPLVTKVHMEVARASRR--GEESILIGHAGH-PQVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEKLSFMTQTTLSVD 184 (328)
T ss_dssp CHHHHHHHHHHHHHHHH--TCEEEEESCTTC-HHHHHHHTTCCCTTSCEEEECSHHHHHHCCCSCTTSEEEEECTTSCHH
T ss_pred CcchHHHHHHHHHHHhC--CCEEEEEccCCC-ceEEeecccccCCCCcEEEECCHHHHHhCCcCCCCeEEEEEecCCcHH
Confidence 77788888888877776 457999999888 8887766432 4677776543322221111233445443333
Q ss_pred --HHHHHHHHhcCCeE----EeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccC----CeEEEEcChhhHH
Q 022297 109 --VEEMVTLNNKNVQI----VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAE 178 (299)
Q Consensus 109 --~~v~~~l~~kgl~V----IDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~----~~~~vv~~~~e~~ 178 (299)
.++.+.|+++.-.+ .|+-|.-...=|..+++++++---+|+||.+|-.-..=+.--| ..++.|++.+|++
T Consensus 185 ~~~~iv~~L~~r~p~i~~~~~ntIC~AT~~RQ~av~~lA~~vD~miVVGg~nSSNT~rL~eia~~~g~~ty~Ie~~~el~ 264 (328)
T 3szu_A 185 DTSDVIDALRKRFPKIVGPRKDDICYATTNRQEAVRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQ 264 (328)
T ss_dssp HHHHHHHHHHHHCTTCBCCSSCSCCHHHHHHHHHHHHHHHHCSEEEEECCTTCHHHHHHHHHHHHTTCEEEEESSGGGCC
T ss_pred HHHHHHHHHHHhCcccccCCCCCcCHHHHHHHHHHHHHHHhCCEEEEeCCCCCchHHHHHHHHHHhCCCEEEeCChHHCC
Confidence 45667788877665 4999999999999999999999999999999887776554433 3689999999985
Q ss_pred hhhhhhccCccCCCCccHHHHHHHHHHhhcCCCCCCCCCceeEEEEccccChHHHHHHHHHHHHHh
Q 022297 179 YVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTM 244 (299)
Q Consensus 179 ~l~~~~~~~q~~~tt~~~e~f~~~~~~~~~~~~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~l~~~~ 244 (299)
.- |+. ....+||++=++-+..-.+++++.|+..+
T Consensus 265 ~~-------------------------wl~-------g~~~VGITAGASTP~~lieeVi~~l~~~~ 298 (328)
T 3szu_A 265 EE-------------------------WVK-------EVKCVGVTAGASAPDILVQNVVARLQQLG 298 (328)
T ss_dssp HH-------------------------HHT-------TCSEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred HH-------------------------HhC-------CCCEEEEeecCCCCHHHHHHHHHHHHHhC
Confidence 31 221 12589999999999999999999997753
No 5
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=88.72 E-value=13 Score=33.21 Aligned_cols=117 Identities=11% Similarity=0.009 Sum_probs=73.6
Q ss_pred cchHHHHHHhcCceeeeec-eEEEEe--------------CCCCCcccHHHHHHHHHHHHhhC--------CCCceEEee
Q 022297 6 TSDIIKKLKENGFEYTWGN-VKVKLA--------------ESYGFCWGVERAVQIAYEARKQF--------PEEKIWITN 62 (299)
Q Consensus 6 ~s~~~~~~~~~~~~~~~~~-M~IilA--------------~~~GFC~GVkRAV~~a~~~~~~~--------~~~~VytlG 62 (299)
.+++.++|++.|++...-+ +++.-. ......|==.+||+...+.+.+. .+.++|+.|
T Consensus 44 ~~~l~~~L~~~G~~v~~~P~i~i~~~~~~~l~~~l~~l~~~~d~lifTS~naV~~~~~~l~~~~~~~~~~l~~~~i~aVG 123 (286)
T 3d8t_A 44 KEEFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRELAQGVDLFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARG 123 (286)
T ss_dssp HHHHHHHHHHHTCEEEECCCEEEEEEECTTHHHHHHHHTTCCSEEEECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESS
T ss_pred hHHHHHHHHHCCCeEEEeeeEEEecCCHHHHHHHHHhhccCCCEEEEECHHHHHHHHHHHHHcCchHHHHhcCCeEEEEC
Confidence 5789999999998776653 344321 12233333455565554443321 124799998
Q ss_pred ccccCHHHHHHHHhcCcEE--ecCCccccccccccCCC-E-EEEcCCCCCHHHHHHHHhcCCeEEeCCC
Q 022297 63 EIIHNPTVNKRLEEMAVQN--IPVEEGKKQFDVVNKGD-V-VVLPAFGAAVEEMVTLNNKNVQIVDTTC 127 (299)
Q Consensus 63 ~LIHN~~Vv~~L~~~GV~~--v~~~~~~~~~~ei~~g~-~-VIIRAHGvs~~v~~~l~~kgl~VIDATC 127 (299)
+ ..-+.|++.|+.. +.+.+....++.+.+|. . ++.|+-+-.+...+.|+++|..|....|
T Consensus 124 ~-----~Ta~aL~~~G~~~~~~p~~~~e~L~~~l~~g~~~vLi~r~~~~~~~L~~~L~~~G~~v~~~~~ 187 (286)
T 3d8t_A 124 A-----KAARALKEAGLPPHAVGDGTSKSLLPLLPQGRGVAALQLYGKPLPLLENALAERGYRVLPLMP 187 (286)
T ss_dssp H-----HHHHHHHHTTCCCSEECSSSGGGGGGGCCCCCSEEEEECSSSCCHHHHHHHHHTTCEEEEECS
T ss_pred H-----HHHHHHHHcCCCccccccccHHHHHHHHHcCCceEEEEccCcccHHHHHHHHHCCCEEEEEEE
Confidence 4 5568999999864 22111222233344465 4 5779888899999999999999976655
No 6
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=82.58 E-value=25 Score=33.56 Aligned_cols=82 Identities=13% Similarity=0.126 Sum_probs=48.0
Q ss_pred ceEEeeccccCHHH----HHHHHhcCcEEec--CCccccccccccCCCEEEEcCCCCCHHHHHHH-HhcCCeEEeCCChh
Q 022297 57 KIWITNEIIHNPTV----NKRLEEMAVQNIP--VEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTL-NNKNVQIVDTTCPW 129 (299)
Q Consensus 57 ~VytlG~LIHN~~V----v~~L~~~GV~~v~--~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l-~~kgl~VIDATCP~ 129 (299)
.|-.+|.+ |+.. ..-|++.|+.++. .....+++..++.....+.-.+-.. ..-+.| ++.|...+....|+
T Consensus 198 ~vnilG~~--~~~~~~ei~~lL~~~Gi~v~~~~~~~~~~el~~~~~A~~ni~~~~~~~-~~A~~Le~~~giP~~~~~~P~ 274 (460)
T 2xdq_A 198 PLVLFGSL--PDPVVTQLTLELKKQGIKVSGWLPAKRYTELPVIDEGYYVAGVNPFLS-RTATTLIRRRKCQLITAPFPI 274 (460)
T ss_dssp CEEEESCC--CHHHHHHHHHHHGGGTCCEEEEESCSSGGGCCCCCTTCEEEESSTTCH-HHHHHHHHTTCCEEECCCCSB
T ss_pred cEEEEEec--CccHHHHHHHHHHHcCCeEEEEeCCCCHHHHHccccCcEEEEcCHhHH-HHHHHHHHHcCCCceecCcCc
Confidence 58899987 7763 5567889998764 1122334444444443333333333 555556 56789999998898
Q ss_pred h-HHHHHHHHHHh
Q 022297 130 V-SKVWTSVEKHK 141 (299)
Q Consensus 130 V-~kv~~~v~~~~ 141 (299)
- ..+-+-.++++
T Consensus 275 G~~~T~~~Lr~ia 287 (460)
T 2xdq_A 275 GPDGTRTWIEQIC 287 (460)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 6 33333333333
No 7
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=81.77 E-value=25 Score=30.42 Aligned_cols=139 Identities=12% Similarity=0.027 Sum_probs=82.4
Q ss_pred cchHHHHHHhcCceeeeec-eEEEEe--------------CCCCCcccHHHHHHHHHHHHhhC--------CCCceEEee
Q 022297 6 TSDIIKKLKENGFEYTWGN-VKVKLA--------------ESYGFCWGVERAVQIAYEARKQF--------PEEKIWITN 62 (299)
Q Consensus 6 ~s~~~~~~~~~~~~~~~~~-M~IilA--------------~~~GFC~GVkRAV~~a~~~~~~~--------~~~~VytlG 62 (299)
.+++.++|++.|++...-+ +++.-. ...+.-|==.+||+...+.+.+. .+.++|+.|
T Consensus 19 ~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~~~~l~~~~d~iiftS~~aV~~~~~~l~~~~~~~~~~l~~~~i~avG 98 (261)
T 1wcw_A 19 KEAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQGVDLFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARG 98 (261)
T ss_dssp HHHHHHHHHHTTCEEEECCCEEEEECCGGGGHHHHHHHHTCCSEEEECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESS
T ss_pred hHHHHHHHHHCCCcEEEeccEEEecCCHHHHHHHHHhhccCCCEEEEeCHHHHHHHHHHHHHhCchHHHHhcCCeEEEEC
Confidence 5788999999997766644 344421 12233444456666655544321 124789988
Q ss_pred ccccCHHHHHHHHhcCcEE--ecCCccccccccccCCC-E-EEEcCCCCCHHHHHHHHhcCCeEEeCCC----hhhHHHH
Q 022297 63 EIIHNPTVNKRLEEMAVQN--IPVEEGKKQFDVVNKGD-V-VVLPAFGAAVEEMVTLNNKNVQIVDTTC----PWVSKVW 134 (299)
Q Consensus 63 ~LIHN~~Vv~~L~~~GV~~--v~~~~~~~~~~ei~~g~-~-VIIRAHGvs~~v~~~l~~kgl~VIDATC----P~V~kv~ 134 (299)
+ ..-+.|++.|+.. +.+.+....++.+.+|. . ++.|+-+-.+...+.|+++|..|....| |.-....
T Consensus 99 ~-----~Ta~~l~~~G~~~~~~p~~~~e~L~~~l~~g~~~vL~~r~~~~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~ 173 (261)
T 1wcw_A 99 A-----KAARALKEAGLPPHAVGDGTSKSLLPLLPQGRGVAALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGIL 173 (261)
T ss_dssp H-----HHHHHHHHTTCCCSEECSSSHHHHGGGSCCCCEEEEEECCSSCCHHHHHHHHHTTEEEEEECSEEEEECHHHHH
T ss_pred H-----HHHHHHHHcCCCCCcccCccHHHHHHHHHcCCceEEEEccCcccHHHHHHHHHCCCEEEEEeeEEEecCCccHH
Confidence 5 4568899999863 22111111223343465 4 5779888899999999999999866654 3322233
Q ss_pred HHHHHHhhCCCeEEE
Q 022297 135 TSVEKHKKGDYTSII 149 (299)
Q Consensus 135 ~~v~~~~~~GY~IVI 149 (299)
...+.+....+.+|+
T Consensus 174 ~~~~~l~~~~~d~v~ 188 (261)
T 1wcw_A 174 RLEEALLRGEVDALA 188 (261)
T ss_dssp HHHHHHHHTCCSEEE
T ss_pred HHHHHHHcCCCCEEE
Confidence 344444444444443
No 8
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=80.71 E-value=7.4 Score=32.87 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=59.7
Q ss_pred ceeeeec-eEEEE-eCCCCCcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcC--cEEecCCcccccc--
Q 022297 18 FEYTWGN-VKVKL-AESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMA--VQNIPVEEGKKQF-- 91 (299)
Q Consensus 18 ~~~~~~~-M~Iil-A~~~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~G--V~~v~~~~~~~~~-- 91 (299)
.+.+|.+ |+|.+ +..-|- ..+++.+.+.+++.....|+.+|+|+. |.+++.|++.+ +.+|....+....
T Consensus 18 ~~~~~~g~m~i~~iSD~Hg~----~~~l~~~l~~~~~~~~D~ii~~GDl~~-~~~~~~l~~l~~~~~~V~GNhD~~~~~~ 92 (190)
T 1s3l_A 18 ENLYFQGHMKIGIMSDTHDH----LPNIRKAIEIFNDENVETVIHCGDFVS-LFVIKEFENLNANIIATYGNNDGERCKL 92 (190)
T ss_dssp --------CEEEEECCCTTC----HHHHHHHHHHHHHSCCSEEEECSCCCS-THHHHHGGGCSSEEEEECCTTCCCHHHH
T ss_pred cChhhcCCeEEEEEeeCCCC----HHHHHHHHHHHhhcCCCEEEECCCCCC-HHHHHHHHhcCCCEEEEeCCCcchHHHH
Confidence 4566765 88765 455442 345555544443322346999999985 67899998654 5555543221100
Q ss_pred ----------------ccccCCCEEEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhC-CCeEEEEecCC
Q 022297 92 ----------------DVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKG-DYTSIIHGKYS 154 (299)
Q Consensus 92 ----------------~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~-GY~IVIiGd~~ 154 (299)
..+..+..-|+=+||-++. ..+.+.+. +..+++.|+--
T Consensus 93 ~~~~~~~~~~~l~~~~~~~~~~~~~ill~Hg~~~~-------------------------l~~~~~~~~~~d~vl~GHtH 147 (190)
T 1s3l_A 93 KEWLKDINEENIIDDFISVEIDDLKFFITHGHHQS-------------------------VLEMAIKSGLYDVVIYGHTH 147 (190)
T ss_dssp HHHHHHHCTTCEEESEEEEEETTEEEEEEESCCHH-------------------------HHHHHHHHSCCSEEEEECSS
T ss_pred HHHhcccChhhhcccceEEeeCCcEEEEECCChHH-------------------------HHHHHHhcCCCCEEEECCCC
Confidence 0111122334446776654 12233333 88999999988
Q ss_pred Cccee
Q 022297 155 HEETV 159 (299)
Q Consensus 155 HPEV~ 159 (299)
-|.+.
T Consensus 148 ~~~~~ 152 (190)
T 1s3l_A 148 ERVFE 152 (190)
T ss_dssp CCEEE
T ss_pred CcceE
Confidence 88775
No 9
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=75.03 E-value=9.3 Score=32.70 Aligned_cols=76 Identities=9% Similarity=0.079 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhc-----CcEEecCCccccccccccCCCE-EEEcCCCCCHHHH
Q 022297 39 VERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM-----AVQNIPVEEGKKQFDVVNKGDV-VVLPAFGAAVEEM 112 (299)
Q Consensus 39 VkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~-----GV~~v~~~~~~~~~~ei~~g~~-VIIRAHGvs~~v~ 112 (299)
+++|.++.-+++.. ++.||++|- =|-.-+....-.+ |+..+. +..++.++|+ +||+..|..+...
T Consensus 24 I~~AA~llaqai~~--~g~IyvfG~-Ghs~~~~~e~~~~~e~l~~~~~~~------~~~~i~~~D~vii~S~Sg~n~~~i 94 (170)
T 3jx9_A 24 LFDVVRLLAQALVG--QGKVYLDAY-GEFEGLYPMLSDGPDQMKRVTKIK------DHKTLHAVDRVLIFTPDTERSDLL 94 (170)
T ss_dssp HHHHHHHHHHHHHT--TCCEEEEEC-GGGGGGTHHHHTSTTCCTTEEECC------TTCCCCTTCEEEEEESCSCCHHHH
T ss_pred HHHHHHHHHHHHhC--CCEEEEECC-CcHHHHHHHHHcccCCccchhhhh------hcCCCCCCCEEEEEeCCCCCHHHH
Confidence 45666666556553 578999983 4444433333221 222221 1236677887 4799999988665
Q ss_pred HH---HHhcCCeEE
Q 022297 113 VT---LNNKNVQIV 123 (299)
Q Consensus 113 ~~---l~~kgl~VI 123 (299)
+. ++++|..+|
T Consensus 95 e~A~~ake~G~~vI 108 (170)
T 3jx9_A 95 ASLARYDAWHTPYS 108 (170)
T ss_dssp HHHHHHHHHTCCEE
T ss_pred HHHHHHHHCCCcEE
Confidence 44 344444444
No 10
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=74.27 E-value=2.1 Score=40.70 Aligned_cols=53 Identities=15% Similarity=0.264 Sum_probs=42.8
Q ss_pred CCCCcccHHHHHHHHHHHHhh---CC-----CCceEEeeccccCHHHHHHHHhcCcEEecC
Q 022297 32 SYGFCWGVERAVQIAYEARKQ---FP-----EEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84 (299)
Q Consensus 32 ~~GFC~GVkRAV~~a~~~~~~---~~-----~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~ 84 (299)
..+||+|.+++.+..++++++ .+ +.+|...|-.+.|+.+.+.|++.|+.+|-+
T Consensus 198 ~~~~~~~~~~~~~~~~~l~~el~~~~~~~~~~~RI~~~G~~~~~~~l~~~le~~Ga~VV~~ 258 (385)
T 3o3m_B 198 KSGFFMRKEEHTELVKDLIAKLNAMPEEVCSGKKVLLTGILADSKDILDILEDNNISVVAD 258 (385)
T ss_dssp HGGGGSCHHHHHHHHHHHHHHHHHSCCCCCSSEEEEEEESCCCCHHHHHHHHHTTEEEEEE
T ss_pred HhheeCCHHHHHHHHHHHHHHHHhhhhcCCCCceEEEECCCCCcHHHHHHHHHCCCEEEEE
Confidence 357999999999988665432 11 237999999999999999999999999864
No 11
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=71.67 E-value=15 Score=31.58 Aligned_cols=116 Identities=14% Similarity=0.158 Sum_probs=74.5
Q ss_pred cccchHHHHHHhcCceeeee-ceEEEEe-----------CCCCCcccHHHHHHHHHHHHh-hCCCCceEEeeccccCHHH
Q 022297 4 EYTSDIIKKLKENGFEYTWG-NVKVKLA-----------ESYGFCWGVERAVQIAYEARK-QFPEEKIWITNEIIHNPTV 70 (299)
Q Consensus 4 ~~~s~~~~~~~~~~~~~~~~-~M~IilA-----------~~~GFC~GVkRAV~~a~~~~~-~~~~~~VytlG~LIHN~~V 70 (299)
+..+++.+.|++.|++...- .+++.-. +.....|==.+||+...+.+. .+++.++|+.|+ ..
T Consensus 11 ~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~l~~~d~viftS~~aV~~~~~~l~~~l~~~~~~aVG~-----~T 85 (240)
T 3mw8_A 11 GKNAAMASALDALAIPYLVEPLLSVEAAAVTQAQLDELSRADILIFISTSAVSFATPWLKDQWPKATYYAVGD-----AT 85 (240)
T ss_dssp TSCHHHHHHHHHHTCCEEECCSCEEEECCCCHHHHHHHTTCSEEEECSHHHHHHHHHHHTTCCCSSEEEESSH-----HH
T ss_pred HHhHHHHHHHHHCCCcEEEeCcEEEeccccHHHHHHHhcCCCEEEEECHHHHHHHHHHHHhhCcCCeEEEECH-----HH
Confidence 44678999999999766543 3344322 234455656677777766654 244567999996 45
Q ss_pred HHHHHhcCcEEe--cCCc-ccccc-c-----cccCCCEEEEcCCCCCHHHHHHHHhcCCeEEe
Q 022297 71 NKRLEEMAVQNI--PVEE-GKKQF-D-----VVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVD 124 (299)
Q Consensus 71 v~~L~~~GV~~v--~~~~-~~~~~-~-----ei~~g~~VIIRAHGvs~~v~~~l~~kgl~VID 124 (299)
-+.|++.|+..+ .+.. .-+.+ + .++...++++|+-+-.+...+.|+++|..|..
T Consensus 86 a~~L~~~G~~~~~~p~~~~~~e~L~~~~~~~~~~g~~vL~~rg~~~r~~l~~~L~~~G~~v~~ 148 (240)
T 3mw8_A 86 ADALALQGITAERSPADSQATEGLLTLPSLEQVSGKQIVIVRGKGGREAMADGLRLRGANVSY 148 (240)
T ss_dssp HHHHHHTTCCCEECC---CCGGGGGGCGGGTCCTTCEEEEEEESSSCCHHHHHHHHTTCEEEE
T ss_pred HHHHHHcCCCCccCCCCcCCHHHHHHhhhhccCCCCEEEEEeCCCcHHHHHHHHHHCCCEEEE
Confidence 689999999653 2211 11111 1 12223457899999999999999999987643
No 12
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=70.43 E-value=13 Score=33.27 Aligned_cols=62 Identities=11% Similarity=0.090 Sum_probs=36.1
Q ss_pred EEEEccccChHHHHHHHHHHHHHhhhccCccchhhhHHhhcCCceEEEEEcCCCCCcchhHhhhhcc
Q 022297 221 GIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIRWLRKRSILSWLLVGGTRAIPHTFKRLQKTV 287 (299)
Q Consensus 221 ~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~~~ei~~l~~~~vd~~lvvG~~~s~~~~~~~~~~~~ 287 (299)
.|++-+|......+++.+.+.+....+.+.-...--...... .+.+++||. +..+.+++..+
T Consensus 100 ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g--~l~~~~gg~---~~~~~~~~~ll 161 (296)
T 3qha_A 100 VIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARG--ELATMVGAD---REVYERIKPAF 161 (296)
T ss_dssp EEEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHT--CEEEEEECC---HHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcC--CccEEecCC---HHHHHHHHHHH
Confidence 578889999999999988887654433321110000111122 346788883 45777766543
No 13
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=70.08 E-value=31 Score=32.98 Aligned_cols=104 Identities=11% Similarity=0.109 Sum_probs=61.4
Q ss_pred eEEEEeCCCCCcc----cHHHHHHHHHHHHhhCCCCceEEeeccccC--HHHHHHHHhcCcEEecCCc--cccccccccC
Q 022297 25 VKVKLAESYGFCW----GVERAVQIAYEARKQFPEEKIWITNEIIHN--PTVNKRLEEMAVQNIPVEE--GKKQFDVVNK 96 (299)
Q Consensus 25 M~IilA~~~GFC~----GVkRAV~~a~~~~~~~~~~~VytlG~LIHN--~~Vv~~L~~~GV~~v~~~~--~~~~~~ei~~ 96 (299)
..|+-+...||-- |...|++...+.+...+...|-.+|++--+ .++..-|++.|+.++.-.+ ..+++..+++
T Consensus 149 ~pVi~v~t~gf~g~~~~G~~~a~~al~~~~~~~~~~~VNilG~~~~~~~~eik~lL~~~Gi~v~~~~~~~~~~ei~~~~~ 228 (437)
T 3aek_A 149 VRVYSYTGSGLDTTFTQGEDTCLAAMVPTLDTTEAAELIVVGALPDVVEDQCLSLLTQLGVGPVRMLPARRSDIEPAVGP 228 (437)
T ss_dssp CEEEEEECCTTTCCTTHHHHHHHHHHGGGSCBCCCCCEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCSSGGGCCCBCT
T ss_pred CeEEEeECCCCCCcHHHHHHHHHHHHHHHhcccCCCcEEEEeCCChhHHHHHHHHHHHcCCceEEEcCCCCHHHHHhhhc
Confidence 4677777778754 555555443332211123569999996433 2455667899998764221 2333333333
Q ss_pred CC-EEEEcCCCCCHHHHHHHHhcCCeEEeCCChhh
Q 022297 97 GD-VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWV 130 (299)
Q Consensus 97 g~-~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V 130 (299)
.. ++++...+ ...-+.|++.|...+..+.|+-
T Consensus 229 A~~niv~~~~~--~~~A~~Le~~GiP~i~~~~P~G 261 (437)
T 3aek_A 229 NTRFILAQPFL--GETTGALERRGAKRIAAPFPFG 261 (437)
T ss_dssp TCEEEESSTTC--HHHHHHHHHTTCEECCCCCSCH
T ss_pred CcEEEEECccH--HHHHHHHHHcCCCeEecCCCcC
Confidence 33 35555444 4455555888999999989873
No 14
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=63.33 E-value=41 Score=29.76 Aligned_cols=115 Identities=12% Similarity=0.119 Sum_probs=70.2
Q ss_pred chHHHHHHhcCceeeeec-eEEEEe-------------CCCCCcccHHHHHHHHHHHHhh--------------CCCCce
Q 022297 7 SDIIKKLKENGFEYTWGN-VKVKLA-------------ESYGFCWGVERAVQIAYEARKQ--------------FPEEKI 58 (299)
Q Consensus 7 s~~~~~~~~~~~~~~~~~-M~IilA-------------~~~GFC~GVkRAV~~a~~~~~~--------------~~~~~V 58 (299)
+++.++|++.|++.-.-+ ++|.-. ......|==.+||+...+.+.+ +++.++
T Consensus 38 ~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~l~~~~~~d~lifTS~naV~~~~~~l~~~~~~~~~~~d~~~~l~~~~i 117 (286)
T 1jr2_A 38 DPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSV 117 (286)
T ss_dssp CHHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECCHHHHHHHHHHHHHTTCHHHHHHHTHHHHHHSEE
T ss_pred cHHHHHHHHCCCceEEEeeEEEecCCHHHHHHHHhCcccccEEEEeCHHHHHHHHHHHHhccccccchhhHHHHhccCcE
Confidence 889999999998765543 444321 1123344445555555443322 113479
Q ss_pred EEeeccccCHHHHHHHHhcCcEEe-cCCccccc-ccc-----ccCCCEEEEcCCCCCHHHHHHHHhcCCeEEeCC
Q 022297 59 WITNEIIHNPTVNKRLEEMAVQNI-PVEEGKKQ-FDV-----VNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTT 126 (299)
Q Consensus 59 ytlG~LIHN~~Vv~~L~~~GV~~v-~~~~~~~~-~~e-----i~~g~~VIIRAHGvs~~v~~~l~~kgl~VIDAT 126 (299)
|+.|+ ..-+.|++.|+..+ .....-+. ++. .+...++++|+-+-.+...+.|+++|..|....
T Consensus 118 ~aVG~-----~Ta~aL~~~G~~~~~p~~~~ae~L~~~l~~~~~~g~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~ 187 (286)
T 1jr2_A 118 YVVGN-----ATASLVSKIGLDTEGETCGNAEKLAEYICSRESSALPLLFPCGNLKREILPKALKDKGIAMESIT 187 (286)
T ss_dssp EECSH-----HHHHHHHHTTCCCSCCSCSSHHHHHHHHHTSCCCSSCEEEEESCGGGCCHHHHHHTTTCCEEEEE
T ss_pred EEECH-----HHHHHHHHcCCCcCCCCccCHHHHHHHHHhcccCCCeEEEECChhhHHHHHHHHHHCCCeeEEEE
Confidence 99995 56688999998853 22111011 111 122346789999888999999999999775443
No 15
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=63.02 E-value=27 Score=28.46 Aligned_cols=67 Identities=6% Similarity=-0.055 Sum_probs=51.4
Q ss_pred HHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeEEE
Q 022297 70 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSII 149 (299)
Q Consensus 70 Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVI 149 (299)
.++.|+++|+.+. |++ -+-...+...++..|+.+++...|...-+....+++.-....+++
T Consensus 47 ~l~~L~~~g~~~~------------------i~T-~~~~~~~~~~~~~lgi~~~~~~~~k~~~l~~~~~~~~~~~~~~~~ 107 (176)
T 3mmz_A 47 GIAALRKSGLTML------------------ILS-TEQNPVVAARARKLKIPVLHGIDRKDLALKQWCEEQGIAPERVLY 107 (176)
T ss_dssp HHHHHHHTTCEEE------------------EEE-SSCCHHHHHHHHHHTCCEEESCSCHHHHHHHHHHHHTCCGGGEEE
T ss_pred HHHHHHHCCCeEE------------------EEE-CcChHHHHHHHHHcCCeeEeCCCChHHHHHHHHHHcCCCHHHEEE
Confidence 6788888887643 111 123456677777888889999999999999998888777788999
Q ss_pred EecCCC
Q 022297 150 HGKYSH 155 (299)
Q Consensus 150 iGd~~H 155 (299)
+||..+
T Consensus 108 vGD~~n 113 (176)
T 3mmz_A 108 VGNDVN 113 (176)
T ss_dssp EECSGG
T ss_pred EcCCHH
Confidence 999864
No 16
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=62.10 E-value=26 Score=29.15 Aligned_cols=83 Identities=12% Similarity=0.108 Sum_probs=49.6
Q ss_pred CceEEeeccccCHHHHHHHHhc--CcEEecCCccccc-cccccC------CCEEEEcCCCCCHHHHHHHHhcCCeEEeCC
Q 022297 56 EKIWITNEIIHNPTVNKRLEEM--AVQNIPVEEGKKQ-FDVVNK------GDVVVLPAFGAAVEEMVTLNNKNVQIVDTT 126 (299)
Q Consensus 56 ~~VytlG~LIHN~~Vv~~L~~~--GV~~v~~~~~~~~-~~ei~~------g~~VIIRAHGvs~~v~~~l~~kgl~VIDAT 126 (299)
..|+.+|+++. +.+++.|++. .+..|....+... +..+|. +..-|+=.||-++
T Consensus 52 D~ii~~GD~~~-~~~~~~l~~~~~~v~~V~GNhD~~~~~~~lp~~~~~~~~g~~i~l~HG~~~----------------- 113 (178)
T 2kkn_A 52 DGVIGLGDYVD-LDTVILLEKFSKEFYGVHGNMDYPDVKEHLPFSKVLLVEGVTIGMCHGWGA----------------- 113 (178)
T ss_dssp SEEEESSCBSC-HHHHHHHHHHTSSEEECCCSSSCGGGGGTSCSCEEEEETTEEEEECCSCCC-----------------
T ss_pred CEEEECCCCCC-HHHHHHHHhcCCCEEEEECCCCcHHHHhhCCcceEEEECCEEEEEECCCCC-----------------
Confidence 46999999987 5788999887 4666754432211 123332 2223555787542
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEEecCCCccee
Q 022297 127 CPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETV 159 (299)
Q Consensus 127 CP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~ 159 (299)
|. .....+.+..+.+..+++.|+--.|.+.
T Consensus 114 -~~--~~~~~~~~~~~~~~d~vi~GHtH~~~~~ 143 (178)
T 2kkn_A 114 -PW--DLKDRLLKVFNEKPQVILFGHTHEPEDT 143 (178)
T ss_dssp -HH--HHHHHHHHHSSSCCSEEECCSCSSCCEE
T ss_pred -CC--CHHHHHHHHhccCCCEEEECccCCCCeE
Confidence 10 0112223333378899999998888765
No 17
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=60.54 E-value=24 Score=30.58 Aligned_cols=117 Identities=14% Similarity=0.110 Sum_probs=74.0
Q ss_pred ccchHHHHHHhcCceeeeec-eEEEEe--------------CCCCCcccHHHHHHHHHHHHhh-C---CCCceEEeeccc
Q 022297 5 YTSDIIKKLKENGFEYTWGN-VKVKLA--------------ESYGFCWGVERAVQIAYEARKQ-F---PEEKIWITNEII 65 (299)
Q Consensus 5 ~~s~~~~~~~~~~~~~~~~~-M~IilA--------------~~~GFC~GVkRAV~~a~~~~~~-~---~~~~VytlG~LI 65 (299)
..+++.+.|++.|++...-+ +++.-. ......|==.+||+...+.+.+ + ++.++|+.|+
T Consensus 17 ~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~~aV~~~~~~l~~~~~~~~~~~i~aVG~-- 94 (254)
T 4es6_A 17 ECAALAASLGEAGVHSSSLPLLAIDPLEETPEQRTLMLDLDRYCAVVVVSKPAARLGLERLDRYWPQPPQQTWCSVGA-- 94 (254)
T ss_dssp HHHHHHHHHHHTTCEEEECCSCEEEECCCCHHHHHHHHTGGGCSEEEECSHHHHHHHHHHHHHHCSSCCSCEEEESSH--
T ss_pred HhHHHHHHHHHCCCcEEEeCCEEEeeCcChHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhCCCcccCEEEEECH--
Confidence 34688999999997665543 344322 2234455556666666555433 1 1247899986
Q ss_pred cCHHHHHHHHhcCcEEecCCcc---c---cccc-----cccCCCEEEEcCCCCCHHHHHHHHhcCCeEEeCC
Q 022297 66 HNPTVNKRLEEMAVQNIPVEEG---K---KQFD-----VVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTT 126 (299)
Q Consensus 66 HN~~Vv~~L~~~GV~~v~~~~~---~---~~~~-----ei~~g~~VIIRAHGvs~~v~~~l~~kgl~VIDAT 126 (299)
..-+.|++.|+.+.-..++ . +.+. ..+...++++|+-+..+...+.|+++|..|....
T Consensus 95 ---~Ta~~L~~~G~~~~~~~~~~~~e~L~~~l~~~~~~~~~~~~vL~~rg~~~r~~L~~~L~~~G~~v~~~~ 163 (254)
T 4es6_A 95 ---ATAAILEAYGLDVTYPEQGDDSEALLALPAFQDSLRVHDPKVLIMRGEGGREFLAERLRGQGVQVDYLP 163 (254)
T ss_dssp ---HHHHHHHHHTCCEECCSSCCSHHHHHTCHHHHHHTCSSSCEEEEEECSSCCCHHHHHHHHTTCEEEEEE
T ss_pred ---HHHHHHHHcCCCcccCCCCCCHHHHHHhHhhcccccCCCCEEEEEcCCccHHHHHHHHHHCCCEEEEEe
Confidence 4558899999976432111 1 1221 2222345789999999999999999999885443
No 18
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=56.53 E-value=33 Score=30.22 Aligned_cols=117 Identities=10% Similarity=0.059 Sum_probs=74.3
Q ss_pred ccchHHHHHHhcCceeeeec-eEEEE--------------eCCCCCcccHHHHHHHHHHHHhh-CC---CCceEEeeccc
Q 022297 5 YTSDIIKKLKENGFEYTWGN-VKVKL--------------AESYGFCWGVERAVQIAYEARKQ-FP---EEKIWITNEII 65 (299)
Q Consensus 5 ~~s~~~~~~~~~~~~~~~~~-M~Iil--------------A~~~GFC~GVkRAV~~a~~~~~~-~~---~~~VytlG~LI 65 (299)
..+++.+.|++.|++.-.-+ +++.- .......|==.+||+...+.+.+ +. ..++|+.|+
T Consensus 25 ~a~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~naV~~~~~~l~~~~~~~~~~~i~aVG~-- 102 (269)
T 3re1_A 25 ESAALARVLADAGIFSSSLPLLETEPLPLTPAQRSIIFELLNYSAVIVVSKPAARLAIELIDEVWPQPPMQPWFSVGS-- 102 (269)
T ss_dssp HHHHHHHHHHTTTCEEEECCCCEEEECCCHHHHHHHHHTGGGSSEEEECSHHHHHHHHHHHHHHCSSCCCSCEEESSH--
T ss_pred HHHHHHHHHHHCCCCEEEcCCEEEecCCCcHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhCCCcccCEEEEECH--
Confidence 35788999999997765543 34432 12234455556777766655543 21 247999996
Q ss_pred cCHHHHHHHHhcCcEEecCCc---c--c-cccc-----cccCCCEEEEcCCCCCHHHHHHHHhcCCeEEeCC
Q 022297 66 HNPTVNKRLEEMAVQNIPVEE---G--K-KQFD-----VVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTT 126 (299)
Q Consensus 66 HN~~Vv~~L~~~GV~~v~~~~---~--~-~~~~-----ei~~g~~VIIRAHGvs~~v~~~l~~kgl~VIDAT 126 (299)
..-+.|++.|+...-..+ . + +.+. ..+...++++|+-+-.+...+.|+++|..|....
T Consensus 103 ---~Ta~aL~~~G~~~~~~~~~~~~e~L~~~l~l~~~~~~~g~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~ 171 (269)
T 3re1_A 103 ---ATGQILLDYGLDASWPEQGDDSEALLDHPRLKQAIAVPGSRVLIMRGNEGRELLAEQLRERGVGVDYLP 171 (269)
T ss_dssp ---HHHHHHHHTTCCEECC-------CGGGCHHHHHHHCSSSCEEEEEECSSCCCHHHHHHHHTTCEEEEEE
T ss_pred ---HHHHHHHHcCCCcccCCCCCCHHHHHHhhhhcccccCCCCEEEEEccCccHHHHHHHHHHCCCEEEEEe
Confidence 556899999997643211 1 1 1111 1222345789999999999999999999885543
No 19
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=52.96 E-value=23 Score=28.37 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=23.2
Q ss_pred EEEcCCCCCHHHHHHHHhcCCeEEeCCChhhH
Q 022297 100 VVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVS 131 (299)
Q Consensus 100 VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~ 131 (299)
|++.+--..++..+.+++.|++++. -|..|.
T Consensus 86 v~~~~G~~~~e~~~~a~~~Girvv~-nC~gv~ 116 (122)
T 3ff4_A 86 VIFNPGTENEELEEILSENGIEPVI-GCTLVM 116 (122)
T ss_dssp EEECTTCCCHHHHHHHHHTTCEEEE-SCHHHH
T ss_pred EEECCCCChHHHHHHHHHcCCeEEC-CcCeEE
Confidence 4454444578888999999999996 898764
No 20
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=51.95 E-value=44 Score=30.35 Aligned_cols=64 Identities=9% Similarity=0.008 Sum_probs=39.9
Q ss_pred CceEEeeccccCHHHHHHHHhcCcEEecCCcccccccccc-CCCEEEEcCCCCCH--HHHHHHHhcCCeEEe
Q 022297 56 EKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVN-KGDVVVLPAFGAAV--EEMVTLNNKNVQIVD 124 (299)
Q Consensus 56 ~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~-~g~~VIIRAHGvs~--~v~~~l~~kgl~VID 124 (299)
-.|+..- .--++...+.|++.|+.+.... +.+.+. .+.-+|+.+=|+|+ ..+++++++|+.|+-
T Consensus 29 ~~V~~~D-~~~~~~~~~~L~~~gi~v~~g~----~~~~l~~~~~d~vV~Spgi~~~~p~~~~a~~~gi~v~~ 95 (326)
T 3eag_A 29 FEVSGCD-AKMYPPMSTQLEALGIDVYEGF----DAAQLDEFKADVYVIGNVAKRGMDVVEAILNLGLPYIS 95 (326)
T ss_dssp CEEEEEE-SSCCTTHHHHHHHTTCEEEESC----CGGGGGSCCCSEEEECTTCCTTCHHHHHHHHTTCCEEE
T ss_pred CEEEEEc-CCCCcHHHHHHHhCCCEEECCC----CHHHcCCCCCCEEEECCCcCCCCHHHHHHHHcCCcEEe
Confidence 3455433 2223456789999999987532 123443 23226666779986 356788899999873
No 21
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=51.69 E-value=39 Score=28.62 Aligned_cols=29 Identities=10% Similarity=0.147 Sum_probs=23.0
Q ss_pred CceEEeeccccCHHHHHHHHhcC--cEEecCC
Q 022297 56 EKIWITNEIIHNPTVNKRLEEMA--VQNIPVE 85 (299)
Q Consensus 56 ~~VytlG~LIHN~~Vv~~L~~~G--V~~v~~~ 85 (299)
..|+.+|+|++ +.+.+.|++.+ +..|...
T Consensus 57 D~vi~~GDl~~-~~~l~~l~~~~~~v~~V~GN 87 (215)
T 2a22_A 57 NYVLCTGNVCS-QEYVEMLKNITKNVYIVSGD 87 (215)
T ss_dssp CEEEECSCCCC-HHHHHHHHHHCSCEEECCCT
T ss_pred CEEEECCCCCC-HHHHHHHHHcCCCEEEecCC
Confidence 46999999996 78899999987 5566543
No 22
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=49.41 E-value=1.1e+02 Score=27.53 Aligned_cols=93 Identities=8% Similarity=-0.025 Sum_probs=62.9
Q ss_pred HHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHH--------
Q 022297 45 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLN-------- 116 (299)
Q Consensus 45 ~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~-------- 116 (299)
||..+++. +-+|+.+. .|+.-.+.|.+.|....++. .++-.+.-|||..=.-++.+.+-+.
T Consensus 18 mA~~L~~~--G~~v~v~d---r~~~~~~~l~~~Ga~~a~s~------~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~~~~ 86 (300)
T 3obb_A 18 MATNLLKA--GYLLNVFD---LVQSAVDGLVAAGASAARSA------RDAVQGADVVISMLPASQHVEGLYLDDDGLLAH 86 (300)
T ss_dssp HHHHHHHT--TCEEEEEC---SSHHHHHHHHHTTCEECSSH------HHHHTTCSEEEECCSCHHHHHHHHHSSSSSTTS
T ss_pred HHHHHHhC--CCeEEEEc---CCHHHHHHHHHcCCEEcCCH------HHHHhcCCceeecCCchHHHHHHHhchhhhhhc
Confidence 45555553 34576664 47899999999999988753 3333333366666555666665543
Q ss_pred -hcCCeEEeCCChhhHHHHHHHHHHhhCCCeEE
Q 022297 117 -NKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (299)
Q Consensus 117 -~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IV 148 (299)
..|-.|||.|=-.....++.++++.++|-..+
T Consensus 87 ~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~l 119 (300)
T 3obb_A 87 IAPGTLVLECSTIAPTSARKIHAAARERGLAML 119 (300)
T ss_dssp CCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 24678899888888888888899888886554
No 23
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=49.13 E-value=59 Score=31.43 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=41.5
Q ss_pred EEEEccccChHHHHHHHHHHHHHh-----hhccCccchhhhHHhhc-CCceEEEEEcCCCCCcchhHhhhhcc
Q 022297 221 GIANQTTMLKGETEEIGKLVEKTM-----MRKFGVENMQCIRWLRK-RSILSWLLVGGTRAIPHTFKRLQKTV 287 (299)
Q Consensus 221 ~Iv~QTT~~~~~~~~i~~~l~~~~-----~~~~g~~~~~ei~~l~~-~~vd~~lvvG~~~s~~~~~~~~~~~~ 287 (299)
.||.-+|.+.+.++++.+.+++.. .-.++|+.+++-..+.. ...+ -+|+||.+ +..+++++.-.
T Consensus 124 iVV~~STv~pgtt~~l~~~l~e~~~~~d~~v~~~Pe~a~eG~a~~d~~~p~-~ivvG~~~--~~~~~~~~~ly 193 (446)
T 4a7p_A 124 VIVTKSTVPVGTGDEVERIIAEVAPNSGAKVVSNPEFLREGAAIEDFKRPD-RVVVGTED--EFARQVMREIY 193 (446)
T ss_dssp EEEECSCCCTTHHHHHHHHHHHHSTTSCCEEEECCCCCCTTSHHHHHHSCS-CEEEECSC--HHHHHHHHHHH
T ss_pred EEEEeCCCCchHHHHHHHHHHHhCCCCCceEEeCcccccccchhhhccCCC-EEEEeCCc--HHHHHHHHHHH
Confidence 467778999999999999998864 34566777655543210 1222 46778763 34677776554
No 24
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=48.72 E-value=95 Score=28.87 Aligned_cols=43 Identities=9% Similarity=0.164 Sum_probs=33.9
Q ss_pred ccccccCCCEEEEcCC-CCCHHHHHHHHhcCCeEEeC--------CChhhHH
Q 022297 90 QFDVVNKGDVVVLPAF-GAAVEEMVTLNNKNVQIVDT--------TCPWVSK 132 (299)
Q Consensus 90 ~~~ei~~g~~VIIRAH-Gvs~~v~~~l~~kgl~VIDA--------TCP~V~k 132 (299)
++..+.+|++++...| ++.++..+.+.++|+++|+. .+|.+..
T Consensus 81 e~~~l~~~~~l~~~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~s~ 132 (377)
T 2vhw_A 81 EYGRLRHGQILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLLAP 132 (377)
T ss_dssp GGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHH
T ss_pred HHhhcCCCCEEEEEecccCCHHHHHHHHHcCCeEEEeeeccccCCCccccCc
Confidence 3455567888888888 58899999999999999965 5676653
No 25
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=48.70 E-value=56 Score=25.46 Aligned_cols=74 Identities=15% Similarity=0.002 Sum_probs=48.7
Q ss_pred HHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCe-EEeCCChhhHHHHHHHHHHhhCCCe
Q 022297 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYT 146 (299)
Q Consensus 68 ~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~-VIDATCP~V~kv~~~v~~~~~~GY~ 146 (299)
.+.++.|+++|+.+. |++ -+-...+...++..|+. .+|...|...-++..++++.-....
T Consensus 42 ~~~l~~l~~~g~~~~------------------i~T-~~~~~~~~~~l~~~gl~~~~~~~kp~~~~~~~~~~~~~~~~~~ 102 (162)
T 2p9j_A 42 GIGIKLLQKMGITLA------------------VIS-GRDSAPLITRLKELGVEEIYTGSYKKLEIYEKIKEKYSLKDEE 102 (162)
T ss_dssp HHHHHHHHTTTCEEE------------------EEE-SCCCHHHHHHHHHTTCCEEEECC--CHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHCCCEEE------------------EEe-CCCcHHHHHHHHHcCCHhhccCCCCCHHHHHHHHHHcCCCHHH
Confidence 467888888776543 111 12245666677777764 6788889888888888877666678
Q ss_pred EEEEecCCCcceeee
Q 022297 147 SIIHGKYSHEETVAT 161 (299)
Q Consensus 147 IVIiGd~~HPEV~Gi 161 (299)
+++|||.. .-+.+.
T Consensus 103 ~~~vGD~~-~Di~~a 116 (162)
T 2p9j_A 103 IGFIGDDV-VDIEVM 116 (162)
T ss_dssp EEEEECSG-GGHHHH
T ss_pred EEEECCCH-HHHHHH
Confidence 99999876 444443
No 26
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=47.97 E-value=49 Score=30.30 Aligned_cols=92 Identities=10% Similarity=0.070 Sum_probs=51.5
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHH
Q 022297 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTL 115 (299)
Q Consensus 36 C~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l 115 (299)
|+...-+.+.+.+++.+.+.-.+...-++=-+|..++.|.++=-..+.... .+.++++.|++.+||+|....+
T Consensus 119 ~st~g~~~~~i~~~l~~~~~~~i~~i~~~~~~p~~i~a~a~~i~~~l~~~~-----~~~~~~~~llfs~HG~P~~~~~-- 191 (310)
T 2h1v_A 119 TFSVQSYNKRAKEEAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASMP-----EDERENAMLIVSAHSLPEKIKE-- 191 (310)
T ss_dssp TTTHHHHHHHHHHHHHHHCSCEEEECCCCTTCHHHHHHHHHHHHHHHHHSC-----HHHHTSEEEEEEEECCBGGGGG--
T ss_pred hhhHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHHHHHHHhcc-----cccCCCceEEEecCCCchhhcc--
Confidence 344444555555555443323455666676778887777654111111000 0112346799999999987543
Q ss_pred HhcCCeEEeCCChhhHHHHHHHHHHhhC
Q 022297 116 NNKNVQIVDTTCPWVSKVWTSVEKHKKG 143 (299)
Q Consensus 116 ~~kgl~VIDATCP~V~kv~~~v~~~~~~ 143 (299)
+ .-|+-..+++.++.+.++
T Consensus 192 --~-------gDpY~~~~~~t~~~l~e~ 210 (310)
T 2h1v_A 192 --F-------GDPYPDQLHESAKLIAEG 210 (310)
T ss_dssp --G-------TCCHHHHHHHHHHHHHHH
T ss_pred --C-------CCChHHHHHHHHHHHHHH
Confidence 2 356777777777665553
No 27
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A
Probab=47.87 E-value=80 Score=30.96 Aligned_cols=135 Identities=11% Similarity=0.038 Sum_probs=67.1
Q ss_pred HHHHHHhhCCCeEEEEecCCCcceeeeccc--CC-eEEEEcChhhHHhh---hhhhccCccCCCCccHHHHHHHHHHhhc
Q 022297 135 TSVEKHKKGDYTSIIHGKYSHEETVATASF--AG-KYIIVKNMKEAEYV---CDYILGGELNGSSSTKEAFLEKFKKAVS 208 (299)
Q Consensus 135 ~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~--~~-~~~vv~~~~e~~~l---~~~~~~~q~~~tt~~~e~f~~~~~~~~~ 208 (299)
..|..+.+.||.|+++ +++...+..+... .+ ......+++|+-.- ++.++.. ..+.+..++.++.+...+.
T Consensus 18 ~lA~~L~~~G~~V~v~-dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~--Vp~~~~v~~vl~~l~~~L~ 94 (484)
T 4gwg_A 18 NLILNMNDHGFVVCAF-NRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILL--VKAGQAVDDFIEKLVPLLD 94 (484)
T ss_dssp HHHHHHHHTTCCEEEE-CSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEEC--SCSSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHCCCEEEEE-eCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEe--cCChHHHHHHHHHHHHhcC
Confidence 4566666777766655 3433333322211 01 12223555554321 2322221 1122244555555544332
Q ss_pred CCCCCCCCCceeEEEEccccChHHHHHHHHHHHHHhhhccCccchhhhHHhhcCCceEEEEEcCCCCCcchhHhhhhcc
Q 022297 209 KGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIRWLRKRSILSWLLVGGTRAIPHTFKRLQKTV 287 (299)
Q Consensus 209 ~~~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~~~ei~~l~~~~vd~~lvvG~~~s~~~~~~~~~~~~ 287 (299)
+ .-.|+.-+|-...++.++.+.+.+....+.+.-..---.-.+.+. .+++||. +..+++++...
T Consensus 95 ----~-----g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~---~im~GG~---~ea~~~v~pll 158 (484)
T 4gwg_A 95 ----T-----GDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGP---SLMPGGN---KEAWPHIKTIF 158 (484)
T ss_dssp ----T-----TCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC---EEEEEEC---GGGHHHHHHHH
T ss_pred ----C-----CCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCC---eeecCCC---HHHHHHHHHHH
Confidence 1 225788888888899999888877655444321111111222344 5668884 45677766543
No 28
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=47.87 E-value=22 Score=30.63 Aligned_cols=83 Identities=18% Similarity=0.169 Sum_probs=51.0
Q ss_pred cccHHHHHHHHHHHHhh------CCCCceEEeeccccCHHHHHHHHhcCcEEecCCc---cccccc----cccCCCEEEE
Q 022297 36 CWGVERAVQIAYEARKQ------FPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEE---GKKQFD----VVNKGDVVVL 102 (299)
Q Consensus 36 C~GVkRAV~~a~~~~~~------~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~---~~~~~~----ei~~g~~VII 102 (299)
-|==.+||+...+.+.+ ..+.++|+.|+ ..-+.|++.|+...-..+ .....+ .++...++++
T Consensus 42 ifTS~naV~~~~~~l~~~~~~~~l~~~~i~aVG~-----~Ta~aL~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~vL~~ 116 (229)
T 3p9z_A 42 IFTSKNAVFSLLETLKNSPKLKMLQNIPAYALSE-----PTAKTLQDHHFKVAFMGEKAHGKEFVQEIFPLLEKKSVLYL 116 (229)
T ss_dssp EESCHHHHHHHHHHTTTCHHHHHHHTSCEEESSH-----HHHHHHHHTTCCBCCCCC---------CCHHHHTTCEEEEE
T ss_pred EEECHHHHHHHHHHHHhccchHHHcCCcEEEECH-----HHHHHHHHcCCCeeecCCcccHHHHHHHHHhhCCCCEEEEE
Confidence 33335566655444321 11357999995 566899999997642111 111112 2222346789
Q ss_pred cCCCCCHHHHHHHHhcCCeEE
Q 022297 103 PAFGAAVEEMVTLNNKNVQIV 123 (299)
Q Consensus 103 RAHGvs~~v~~~l~~kgl~VI 123 (299)
|+-+-.+...+.|+++|..|.
T Consensus 117 rg~~~~~~L~~~L~~~G~~v~ 137 (229)
T 3p9z_A 117 RAKEIVSSLDTILLEHGIDFK 137 (229)
T ss_dssp EESSCSSCHHHHHHHTTCEEE
T ss_pred CCccchHHHHHHHHHCCCeEE
Confidence 999999999999999998873
No 29
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=47.43 E-value=33 Score=27.60 Aligned_cols=34 Identities=15% Similarity=0.048 Sum_probs=24.9
Q ss_pred EEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHH
Q 022297 100 VVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKV 133 (299)
Q Consensus 100 VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv 133 (299)
+++-+-+..++..+.++++|++++|--|+-+...
T Consensus 97 i~~~~~~~~~~l~~~a~~~Gi~~igpnc~g~~~~ 130 (138)
T 1y81_A 97 LWFQPGAESEEIRRFLEKAGVEYSFGRCIMVETS 130 (138)
T ss_dssp EEECTTSCCHHHHHHHHHHTCEEECSCCHHHHC-
T ss_pred EEEcCccHHHHHHHHHHHCCCEEEcCCcceEEcc
Confidence 3334445688888888889999998888877544
No 30
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=46.39 E-value=1.3e+02 Score=25.01 Aligned_cols=95 Identities=7% Similarity=0.032 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhhCCCC--ceEEeeccccCHHHHHHHHhcCcEEecC-Ccccc-----------ccccccCCCEEEEcC
Q 022297 39 VERAVQIAYEARKQFPEE--KIWITNEIIHNPTVNKRLEEMAVQNIPV-EEGKK-----------QFDVVNKGDVVVLPA 104 (299)
Q Consensus 39 VkRAV~~a~~~~~~~~~~--~VytlG~LIHN~~Vv~~L~~~GV~~v~~-~~~~~-----------~~~ei~~g~~VIIRA 104 (299)
+++=|..+.+++++..+. ..|..----.|+.+.+.|++.|...+.- .+..+ .+..+.+|++|++
T Consensus 77 ~~~ei~~~~~~l~~~~G~~~~~fr~P~G~~~~~~~~~~~~~G~~~v~w~~d~~Dw~~~~~~~i~~~~~~~~~g~IiL~-- 154 (195)
T 2cc0_A 77 MDSEISRTQQAIAGAGGGTPKLFRPPYGETNATLRSVEAKYGLTEVIWDVDSQDWNNASTDAIVQAVSRLGNGQVILM-- 154 (195)
T ss_dssp HHHHHHHHHHHHHHTTSCCCSEECCGGGCCCHHHHHHHHHTTCEECCCSEECCGGGTCCHHHHHHHHHTCCTTCEEEE--
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEECCCCCcCHHHHHHHHHCCCeEEEeccCCCccCCCCHHHHHHHHhCcCcCeEEEE--
Confidence 444455566666553222 3455444467999999999999998752 11100 0111223433322
Q ss_pred CCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEEecC
Q 022297 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKY 153 (299)
Q Consensus 105 HGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~ 153 (299)
|..++ .-+..+-.++..+.++||+++.+.+.
T Consensus 155 Hd~~~------------------~t~~al~~ii~~l~~~Gy~~v~l~~~ 185 (195)
T 2cc0_A 155 HDWPA------------------NTLAAIPRIAQTLAGKGLCSGMISPQ 185 (195)
T ss_dssp ESSCH------------------HHHHHHHHHHHHHHHTTEEECEECTT
T ss_pred CCCch------------------hHHHHHHHHHHHHHHCCCEEEEeCcc
Confidence 33321 13466777888999999999887654
No 31
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=46.24 E-value=1.1e+02 Score=28.81 Aligned_cols=92 Identities=12% Similarity=0.118 Sum_probs=56.9
Q ss_pred cccHHHHHHHHHHHHhhCC---CCceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHH
Q 022297 36 CWGVERAVQIAYEARKQFP---EEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEM 112 (299)
Q Consensus 36 C~GVkRAV~~a~~~~~~~~---~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~ 112 (299)
|.-+.-+++.+.++..+.. .-++-..-+.=-+|.-++.|.+.=-..++... .+..+...++|+|||+|....
T Consensus 132 ~~Ttgs~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~yI~a~a~~I~~~l~~~~-----~~~~~~~~LlfSaHgiP~~~~ 206 (359)
T 3hcn_A 132 CSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKELDHFP-----LEKRSEVVILFSAHSLPMSVV 206 (359)
T ss_dssp TTTHHHHHHHHHHHHHHTTCCCSSEEEEECCCTTCHHHHHHHHHHHHHHHTTSC-----TTTGGGCEEEEEEECCBHHHH
T ss_pred ccchhhHHHHHHHHHHHhccCCCCceEEeCCccCCHHHHHHHHHHHHHHHHhCC-----ccccCCcEEEEEcCCChHhhc
Confidence 4556667777766665431 11356677777788888888764211121100 011123479999999999876
Q ss_pred HHHHhcCCeEEeCCChhhHHHHHHHHHHhhC
Q 022297 113 VTLNNKNVQIVDTTCPWVSKVWTSVEKHKKG 143 (299)
Q Consensus 113 ~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~ 143 (299)
++| -|+...+++.++.+.++
T Consensus 207 ----~~G-------DpY~~q~~~t~~lv~e~ 226 (359)
T 3hcn_A 207 ----NRG-------DPYPQEVSATVQKVMER 226 (359)
T ss_dssp ----TTT-------CSHHHHHHHHHHHHHHH
T ss_pred ----ccC-------CCHHHHHHHHHHHHHHH
Confidence 345 48888888888777664
No 32
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=44.94 E-value=65 Score=28.20 Aligned_cols=130 Identities=15% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCeEEEEecCCCcceeeecccCCeEEEEcChhhHHhhhhhhccCccCCCCccHHHHH---HHHHHhhcCC
Q 022297 134 WTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFL---EKFKKAVSKG 210 (299)
Q Consensus 134 ~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~~~~~vv~~~~e~~~l~~~~~~~q~~~tt~~~e~f~---~~~~~~~~~~ 210 (299)
...++.+.+.|+.|+++ +++-..+..+... ......+.+++-.-+++++.. ..++...++.+ +.+...+.++
T Consensus 14 ~~~a~~l~~~G~~V~~~-dr~~~~~~~~~~~--g~~~~~~~~~~~~~aDvvi~~--vp~~~~~~~v~~~~~~l~~~l~~~ 88 (287)
T 3pef_A 14 SAMAKNLVKAGCSVTIW-NRSPEKAEELAAL--GAERAATPCEVVESCPVTFAM--LADPAAAEEVCFGKHGVLEGIGEG 88 (287)
T ss_dssp HHHHHHHHHTTCEEEEE-CSSGGGGHHHHHT--TCEECSSHHHHHHHCSEEEEC--CSSHHHHHHHHHSTTCHHHHCCTT
T ss_pred HHHHHHHHHCCCeEEEE-cCCHHHHHHHHHC--CCeecCCHHHHHhcCCEEEEE--cCCHHHHHHHHcCcchHhhcCCCC
Q ss_pred CCCCCCCceeEEEEccccChHHHHHHHHHHHHHhhhccCccchhhhHHhhcCCc------eEEEEEcCCCCCcchhHhhh
Q 022297 211 FDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIRWLRKRSI------LSWLLVGGTRAIPHTFKRLQ 284 (299)
Q Consensus 211 ~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~~~ei~~l~~~~v------d~~lvvG~~~s~~~~~~~~~ 284 (299)
- .+++-+|.+....+++.+.+++....+.+.-. .+.. ...+++|| .+..+.+++
T Consensus 89 ~---------~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv--------~g~~~~a~~g~l~~~~gg---~~~~~~~~~ 148 (287)
T 3pef_A 89 R---------GYVDMSTVDPATSQRIGVAVVAKGGRFLEAPV--------SGSKKPAEDGTLIILAAG---DRNLYDEAM 148 (287)
T ss_dssp C---------EEEECSCCCHHHHHHHHHHHHHTTCEEEECCE--------ECCHHHHHHTCEEEEEEE---CHHHHHHHH
T ss_pred C---------EEEeCCCCCHHHHHHHHHHHHHhCCEEEECCC--------cCCHHHHhcCCEEEEEeC---CHHHHHHHH
Q ss_pred hccc
Q 022297 285 KTVE 288 (299)
Q Consensus 285 ~~~~ 288 (299)
.-.+
T Consensus 149 ~ll~ 152 (287)
T 3pef_A 149 PGFE 152 (287)
T ss_dssp HHHH
T ss_pred HHHH
No 33
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=44.41 E-value=63 Score=29.09 Aligned_cols=93 Identities=9% Similarity=-0.057 Sum_probs=56.0
Q ss_pred HHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHH-------HHHh
Q 022297 45 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMV-------TLNN 117 (299)
Q Consensus 45 ~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~-------~l~~ 117 (299)
||..+++. +-+|+.+. -|+..++.|.+.|....++. .++-+..-|||..=.-++.+.+ ....
T Consensus 20 mA~~L~~~--G~~V~v~d---r~~~~~~~l~~~G~~~~~s~------~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~~~~ 88 (297)
T 4gbj_A 20 IAEILLEA--GYELVVWN---RTASKAEPLTKLGATVVENA------IDAITPGGIVFSVLADDAAVEELFSMELVEKLG 88 (297)
T ss_dssp HHHHHHHT--TCEEEEC----------CTTTTTTCEECSSG------GGGCCTTCEEEECCSSHHHHHHHSCHHHHHHHC
T ss_pred HHHHHHHC--CCeEEEEe---CCHHHHHHHHHcCCeEeCCH------HHHHhcCCceeeeccchhhHHHHHHHHHHhhcC
Confidence 44444543 34576654 36788889999999998753 3333333355555444443332 2335
Q ss_pred cCCeEEeCCChhhHHHHHHHHHHhhCCCeEE
Q 022297 118 KNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (299)
Q Consensus 118 kgl~VIDATCP~V~kv~~~v~~~~~~GY~IV 148 (299)
+|-.+||.+=-.....++.++.+.++|...+
T Consensus 89 ~~~iiid~sT~~p~~~~~~~~~~~~~g~~~l 119 (297)
T 4gbj_A 89 KDGVHVSMSTISPETSRQLAQVHEWYGAHYV 119 (297)
T ss_dssp TTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCChHHHHHHHHHHHhcCCcee
Confidence 7778999888788888999999999986655
No 34
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=43.99 E-value=59 Score=29.26 Aligned_cols=62 Identities=10% Similarity=0.091 Sum_probs=36.3
Q ss_pred EEEEccccChHHHHHHHHHHHHHhhhccCccchhhhHHhhcCCceEEEEEcCCCCCcchhHhhhhcc
Q 022297 221 GIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIRWLRKRSILSWLLVGGTRAIPHTFKRLQKTV 287 (299)
Q Consensus 221 ~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~~~ei~~l~~~~vd~~lvvG~~~s~~~~~~~~~~~~ 287 (299)
.|++-+|.+....+++.+.+++....+.+.-...--.....+ .+.+++||. +.++++++...
T Consensus 119 ~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g--~l~i~~gg~---~~~~~~~~~ll 180 (320)
T 4dll_A 119 LFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQG--TLVIMAGGK---PADFERSLPLL 180 (320)
T ss_dssp EEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECHHHHHHHT--CEEEEEESC---HHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHhHHhcC--CeeEEeCCC---HHHHHHHHHHH
Confidence 578889999999999999888765444322111111111122 246778883 45666665443
No 35
>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A
Probab=43.44 E-value=1e+02 Score=27.64 Aligned_cols=82 Identities=10% Similarity=0.046 Sum_probs=50.2
Q ss_pred ccHHHHHHHHHHHHhhCC-CCceEEeeccc-cCHHHHHHHHhcCcEEecCCcc---c----------------ccccccc
Q 022297 37 WGVERAVQIAYEARKQFP-EEKIWITNEII-HNPTVNKRLEEMAVQNIPVEEG---K----------------KQFDVVN 95 (299)
Q Consensus 37 ~GVkRAV~~a~~~~~~~~-~~~VytlG~LI-HN~~Vv~~L~~~GV~~v~~~~~---~----------------~~~~ei~ 95 (299)
.|-+..+..+.++++++. ....|+.|..+ .||.+++++.+.|-.+-...-. . +.+.++.
T Consensus 77 dG~~~~~~~ll~iL~~~~v~aTfFv~g~~~~~~p~~v~~i~~~GheIg~Ht~~H~~~~~~s~~~~~~ei~~~~~~l~~~~ 156 (308)
T 3cl6_A 77 YGSRAGVWRILKLFKAFDIPLTIFAVAMAAQRHPDVIRAMVAAGHEICSHGYRWIDYQYMDEAQEREHMLEAIRILTELT 156 (308)
T ss_dssp HHHHTHHHHHHHHHHHTTCCCEEEECHHHHHHCHHHHHHHHHTTCEEEECCSSSSCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCchhhHHHHHHHHHHcCCCEEEEeEHHHHHHCHHHHHHHHHcCCEEEeCCCCCcccccCCHHHHHHHHHHHHHHHHHHh
Confidence 344444444555555542 23688888865 7999999999999765432100 0 0111111
Q ss_pred CCC-EEEEcCCCCCHHHHHHHHhcC
Q 022297 96 KGD-VVVLPAFGAAVEEMVTLNNKN 119 (299)
Q Consensus 96 ~g~-~VIIRAHGvs~~v~~~l~~kg 119 (299)
|. ...+|+-..++.+.+.|++.|
T Consensus 157 -G~~p~g~r~~~~~~~~~~~l~~~G 180 (308)
T 3cl6_A 157 -GERPLGWYTGRTGPNTRRLVMEEG 180 (308)
T ss_dssp -SSCCSEECCSSCCTTHHHHHHHHC
T ss_pred -CCCcceEECCCCCHHHHHHHHHCC
Confidence 32 345777667889999999988
No 36
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=42.61 E-value=60 Score=31.24 Aligned_cols=66 Identities=12% Similarity=0.049 Sum_probs=41.2
Q ss_pred eEEEEccccChHHHHHHHHHHHHHhhh---------ccCccchhhhHHhh-cCCceEEEEEcCCCCCcchhHhhhhccc
Q 022297 220 VGIANQTTMLKGETEEIGKLVEKTMMR---------KFGVENMQCIRWLR-KRSILSWLLVGGTRAIPHTFKRLQKTVE 288 (299)
Q Consensus 220 v~Iv~QTT~~~~~~~~i~~~l~~~~~~---------~~g~~~~~ei~~l~-~~~vd~~lvvG~~~s~~~~~~~~~~~~~ 288 (299)
-.|+.-+|.+.+.++++.+.+++.... .++|+.+++-..+. -...+ .+|+||.+ +..+++++.-.+
T Consensus 116 ~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~Pe~a~eG~~~~~~~~p~-~ivvG~~~--~~~~~~~~~l~~ 191 (450)
T 3gg2_A 116 ILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPEFLKEGNAIDDFMKPD-RVVVGVDS--DRARELITSLYK 191 (450)
T ss_dssp EEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCCCCCTTSHHHHHHSCS-CEEEEESS--HHHHHHHHHHHT
T ss_pred CEEEEeeeCCCcchHHHHHHHHHhccccCcCcceeEEechhhhcccchhhhccCCC-EEEEEcCC--HHHHHHHHHHHH
Confidence 356777889999999999988876432 45677655543210 01122 36778753 457777776554
No 37
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=42.61 E-value=58 Score=30.37 Aligned_cols=60 Identities=13% Similarity=0.119 Sum_probs=36.1
Q ss_pred EEEEccccChHHHHHHHHHHHHHhhhccCccchhhhHHhhcCCceEEEEEcCCCCCcchhHhhhhc
Q 022297 221 GIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIRWLRKRSILSWLLVGGTRAIPHTFKRLQKT 286 (299)
Q Consensus 221 ~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~~~ei~~l~~~~vd~~lvvG~~~s~~~~~~~~~~~ 286 (299)
.|++-+|-......++.+.+.+....+.+.-..---.-.+.+. .+++||. +..+.+++..
T Consensus 110 iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~---~im~GG~---~~a~~~~~~l 169 (358)
T 4e21_A 110 IVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGY---CLMIGGE---KQAVERLDPV 169 (358)
T ss_dssp EEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCC---EEEEESC---HHHHHHTHHH
T ss_pred EEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCC---eeeecCC---HHHHHHHHHH
Confidence 5888899999999999888877655444321110011222343 5678885 4466666543
No 38
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=42.59 E-value=1.1e+02 Score=24.98 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=26.5
Q ss_pred ccCCCE-EEEcCCCCCHHHHHH---HHhcCCeEEeCCChhhH
Q 022297 94 VNKGDV-VVLPAFGAAVEEMVT---LNNKNVQIVDTTCPWVS 131 (299)
Q Consensus 94 i~~g~~-VIIRAHGvs~~v~~~---l~~kgl~VIDATCP~V~ 131 (299)
+.++|. |+|+.-|-++++.+. ++++|..+|=-|+..-.
T Consensus 111 ~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s 152 (199)
T 1x92_A 111 GQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGG 152 (199)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 556776 568999999987654 45677777766665433
No 39
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=40.71 E-value=1.4e+02 Score=23.84 Aligned_cols=62 Identities=13% Similarity=0.102 Sum_probs=38.0
Q ss_pred cCCCCCHHHHHHHH--hcCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccC
Q 022297 103 PAFGAAVEEMVTLN--NKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA 165 (299)
Q Consensus 103 RAHGvs~~v~~~l~--~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~ 165 (299)
+.||-++..++.+- .+.+-||=|+=.--+--+..++.+.+.||.|+-+ ++...|+.|+.-|.
T Consensus 6 ~~~~m~~~~l~~ll~~p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~V-np~~~~i~G~~~y~ 69 (144)
T 2d59_A 6 PIDGLTDEDIREILTRYKKIALVGASPKPERDANIVMKYLLEHGYDVYPV-NPKYEEVLGRKCYP 69 (144)
T ss_dssp CSSCCCHHHHHHHHHHCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEE-CTTCSEETTEECBS
T ss_pred ccCCCCHHHHHHHHcCCCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEE-CCCCCeECCeeccC
Confidence 55666766555544 4677777664221223445566788899996666 45567777766553
No 40
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=40.31 E-value=95 Score=24.94 Aligned_cols=76 Identities=9% Similarity=-0.058 Sum_probs=50.7
Q ss_pred cCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCe-EEeCCChhhHHHHHHHHHHhhCC
Q 022297 66 HNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGD 144 (299)
Q Consensus 66 HN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~-VIDATCP~V~kv~~~v~~~~~~G 144 (299)
.+...++.|+++|+.++= + +-+-...+...++..|+. +++..+|.-.-+....+++.-.-
T Consensus 39 ~~~~~l~~L~~~G~~~~i------------------~-Tg~~~~~~~~~~~~lgl~~~~~~~k~k~~~~~~~~~~~~~~~ 99 (180)
T 1k1e_A 39 RDGLGIKMLMDADIQVAV------------------L-SGRDSPILRRRIADLGIKLFFLGKLEKETACFDLMKQAGVTA 99 (180)
T ss_dssp HHHHHHHHHHHTTCEEEE------------------E-ESCCCHHHHHHHHHHTCCEEEESCSCHHHHHHHHHHHHTCCG
T ss_pred chHHHHHHHHHCCCeEEE------------------E-eCCCcHHHHHHHHHcCCceeecCCCCcHHHHHHHHHHcCCCH
Confidence 356788899888876541 1 111234556666667774 67888998888877777765555
Q ss_pred CeEEEEecCCCcceeee
Q 022297 145 YTSIIHGKYSHEETVAT 161 (299)
Q Consensus 145 Y~IVIiGd~~HPEV~Gi 161 (299)
..++.|||.. --+.+.
T Consensus 100 ~~~~~vGD~~-~Di~~~ 115 (180)
T 1k1e_A 100 EQTAYIGDDS-VDLPAF 115 (180)
T ss_dssp GGEEEEECSG-GGHHHH
T ss_pred HHEEEECCCH-HHHHHH
Confidence 6899999986 444433
No 41
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=37.75 E-value=1.6e+02 Score=23.92 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=26.0
Q ss_pred ccCCCE-EEEcCCCCCHHHHHHH---HhcCCeEEeCCChhhH
Q 022297 94 VNKGDV-VVLPAFGAAVEEMVTL---NNKNVQIVDTTCPWVS 131 (299)
Q Consensus 94 i~~g~~-VIIRAHGvs~~v~~~l---~~kgl~VIDATCP~V~ 131 (299)
+.++|. |+|+.-|-++++.+.+ +++|+++|=-|+..-.
T Consensus 107 ~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s 148 (196)
T 2yva_A 107 GHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGG 148 (196)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 456776 5688999999876554 5677777666665433
No 42
>2i5i_A UPF0249 protein EF_3048; putative cellobiose-phosphate cleavage protein, structural G joint center for structural genomics, JCSG; HET: MSE; 1.70A {Enterococcus faecalis} SCOP: c.6.2.8
Probab=37.26 E-value=16 Score=32.78 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=29.3
Q ss_pred ceEE-EEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeeccccC---HHHHHHHH
Q 022297 24 NVKV-KLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHN---PTVNKRLE 75 (299)
Q Consensus 24 ~M~I-ilA~~~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN---~~Vv~~L~ 75 (299)
+|++ +-|.-.|+|.||.+||-.+.+. +.|-..+=++=- ++.++.++
T Consensus 4 ~~~LIvnADDfGls~~vN~gI~~~~~~------G~ltstslMvn~p~~~~A~~~~k 53 (263)
T 2i5i_A 4 NKKLIINADDFGYTPAVTQGIIEAHKR------GVVTSTTALPTSPYFLEAMESAR 53 (263)
T ss_dssp CCEEEEEEEEETSSHHHHHHHHHHHHS------SSCCEEEECTTSTTHHHHHHHHH
T ss_pred ccEEEEEcccCCCChhHHHHHHHHHHC------CcceEeeeccCCcHHHHHHHHHH
Confidence 5664 5599999999999999876441 333333333332 45555666
No 43
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=37.23 E-value=1.2e+02 Score=28.69 Aligned_cols=70 Identities=11% Similarity=0.075 Sum_probs=42.8
Q ss_pred eEEeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHH
Q 022297 58 IWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSV 137 (299)
Q Consensus 58 VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v 137 (299)
+...-+.=.+|..++.|.++=-..++... .+.+++..|+++|||+|....+ +| -|+...+++.+
T Consensus 162 i~~i~~~~~~p~~I~ala~~I~~~l~~~~-----~~~~~~~~llfSaHglP~~~~~----~G-------DpY~~q~~~ta 225 (362)
T 1lbq_A 162 WSVIDRWPTNEGLIKAFSENITKKLQEFP-----QPVRDKVVLLFSAHSLPMDVVN----TG-------DAYPAEVAATV 225 (362)
T ss_dssp EEEECCCTTCHHHHHHHHHHHHHHHHTSC-----STTGGGCEEEEEEECCBHHHHT----TT-------CSHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHhcC-----cccCCCeEEEEecCCCcccccc----CC-------CcHHHHHHHHH
Confidence 44667777788888887664111111100 0011234799999999998763 34 56888888887
Q ss_pred HHHhhC
Q 022297 138 EKHKKG 143 (299)
Q Consensus 138 ~~~~~~ 143 (299)
+.+.++
T Consensus 226 ~ll~e~ 231 (362)
T 1lbq_A 226 YNIMQK 231 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666553
No 44
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=36.93 E-value=82 Score=28.09 Aligned_cols=136 Identities=9% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCeEEEEecCCCcceeeecccCCeEEEEcChhhHHhhhhhhccCccCCCCccHHHHH---HHHHHhhcCC
Q 022297 134 WTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFL---EKFKKAVSKG 210 (299)
Q Consensus 134 ~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~~~~~vv~~~~e~~~l~~~~~~~q~~~tt~~~e~f~---~~~~~~~~~~ 210 (299)
...++.+.+.||.|+++ +++-..+..+.... .....+.+++-.-+++++.. ..++...++.+ +.+...+.++
T Consensus 34 ~~~A~~l~~~G~~V~~~-dr~~~~~~~l~~~g--~~~~~~~~~~~~~aDvvi~~--vp~~~~~~~v~~~~~~l~~~l~~g 108 (310)
T 3doj_A 34 KAMSMNLLKNGFKVTVW-NRTLSKCDELVEHG--ASVCESPAEVIKKCKYTIAM--LSDPCAALSVVFDKGGVLEQICEG 108 (310)
T ss_dssp HHHHHHHHHTTCEEEEE-CSSGGGGHHHHHTT--CEECSSHHHHHHHCSEEEEC--CSSHHHHHHHHHSTTCGGGGCCTT
T ss_pred HHHHHHHHHCCCeEEEE-eCCHHHHHHHHHCC--CeEcCCHHHHHHhCCEEEEE--cCCHHHHHHHHhCchhhhhccCCC
Q ss_pred CCCCCCCceeEEEEccccChHHHHHHHHHHHHHhhhccCccchhhhHHhhcCCceEEEEEcCCCCCcchhHhhhhccc
Q 022297 211 FDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIRWLRKRSILSWLLVGGTRAIPHTFKRLQKTVE 288 (299)
Q Consensus 211 ~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~~~ei~~l~~~~vd~~lvvG~~~s~~~~~~~~~~~~~ 288 (299)
- .|++-+|......+++.+.+.+....+.+.-..---.....+.. ++++||. +..+.+++...+
T Consensus 109 ~---------~vv~~st~~~~~~~~~~~~~~~~g~~~v~~pv~g~~~~a~~g~l--~i~~gg~---~~~~~~~~~ll~ 172 (310)
T 3doj_A 109 K---------GYIDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQL--IILAAGD---KALFEESIPAFD 172 (310)
T ss_dssp C---------EEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCE--EEEEEEC---HHHHHHHHHHHH
T ss_pred C---------EEEECCCCCHHHHHHHHHHHHHcCCEEEeCCCCCChhHHhcCCe--EEEEcCC---HHHHHHHHHHHH
No 45
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=36.15 E-value=17 Score=29.91 Aligned_cols=76 Identities=24% Similarity=0.438 Sum_probs=50.0
Q ss_pred CCccccchHHHHHHhc-CceeeeeceEEEEeCCCCC-cccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcC
Q 022297 1 MNQEYTSDIIKKLKEN-GFEYTWGNVKVKLAESYGF-CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMA 78 (299)
Q Consensus 1 ~~~~~~s~~~~~~~~~-~~~~~~~~M~IilA~~~GF-C~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~G 78 (299)
|+.+-++.|++..+.. |+++.||.. .+.|| |.|--+.+ ++.. . + |--|..-....+.|
T Consensus 1 mn~~~~~~ii~~a~~~lG~PY~wGG~-----~~~G~DCSGlv~~v---y~~~--~-G---------i~lPr~s~~q~~~g 60 (135)
T 2k1g_A 1 MNVDVKSRIMDQYADWKGVRYRLGGS-----TKKGIDCSGFVQRT---FREQ--F-G---------LELPRSTYEQQEMG 60 (135)
T ss_dssp CCCCHHHHHHHHHHHHTTCCCCSSCC-----BTTBCCHHHHHHHH---HHHT--T-C---------CCCCSSHHHHGGGS
T ss_pred CCHhHHHHHHHHHHHHCCCCccCCCc-----CCCCceeHHHHHHH---HHHc--C-C---------CCCCCCHHHHhhCC
Confidence 6788899999988876 999999974 47798 99965432 2211 1 1 11234445555566
Q ss_pred cEEecCCccccccccccCCCEEEEcC
Q 022297 79 VQNIPVEEGKKQFDVVNKGDVVVLPA 104 (299)
Q Consensus 79 V~~v~~~~~~~~~~ei~~g~~VIIRA 104 (299)
-.+ + .+++.+||.|+++.
T Consensus 61 ~~V-~-------~~~l~pGDLvFf~~ 78 (135)
T 2k1g_A 61 KSV-S-------RSNLRTGDLVLFRA 78 (135)
T ss_dssp EEE-C-------GGGCCTTEEEEEEE
T ss_pred cEe-c-------HHHccCCcEEEECC
Confidence 443 2 36678899888864
No 46
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=35.90 E-value=86 Score=30.57 Aligned_cols=92 Identities=12% Similarity=0.166 Sum_probs=48.4
Q ss_pred eeeeceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCE
Q 022297 20 YTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDV 99 (299)
Q Consensus 20 ~~~~~M~IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~ 99 (299)
|-|..++|.+. |.| |.=++ -+|.-+.+ . +-.|...-. --++...+.|++.|+.+...- ..+.+..+.-
T Consensus 15 ~~~~~~~i~~i---GiG-g~Gms-~lA~~l~~-~-G~~V~~sD~-~~~~~~~~~L~~~gi~~~~G~----~~~~~~~~~d 82 (524)
T 3hn7_A 15 LYFQGMHIHIL---GIC-GTFMG-SLALLARA-L-GHTVTGSDA-NIYPPMSTQLEQAGVTIEEGY----LIAHLQPAPD 82 (524)
T ss_dssp ----CCEEEEE---TTT-SHHHH-HHHHHHHH-T-TCEEEEEES-CCCTTHHHHHHHTTCEEEESC----CGGGGCSCCS
T ss_pred eeecCCEEEEE---Eec-HhhHH-HHHHHHHh-C-CCEEEEECC-CCCcHHHHHHHHCCCEEECCC----CHHHcCCCCC
Confidence 45667777765 333 22221 12222232 2 234544322 223556789999999987542 1233433322
Q ss_pred EEEcCCCCCH--HHHHHHHhcCCeEE
Q 022297 100 VVLPAFGAAV--EEMVTLNNKNVQIV 123 (299)
Q Consensus 100 VIIRAHGvs~--~v~~~l~~kgl~VI 123 (299)
+|+-+=|+|+ ..+++++++|+.|+
T Consensus 83 ~vV~Spgi~~~~p~l~~a~~~gi~v~ 108 (524)
T 3hn7_A 83 LVVVGNAMKRGMDVIEYMLDTGLRYT 108 (524)
T ss_dssp EEEECTTCCTTSHHHHHHHHHTCCEE
T ss_pred EEEECCCcCCCCHHHHHHHHCCCcEE
Confidence 5666678985 34577888999887
No 47
>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} SCOP: c.6.2.3
Probab=35.59 E-value=2e+02 Score=25.06 Aligned_cols=26 Identities=12% Similarity=-0.054 Sum_probs=19.3
Q ss_pred eEEeeccccCHHHHHHHHhcCcEEec
Q 022297 58 IWITNEIIHNPTVNKRLEEMAVQNIP 83 (299)
Q Consensus 58 VytlG~LIHN~~Vv~~L~~~GV~~v~ 83 (299)
.|..----.|+.+.+.|+++|..++.
T Consensus 150 ~fr~P~G~~~~~~~~~l~~~G~~~v~ 175 (247)
T 2j13_A 150 YVRPPRGVFSERTLALTKEMGYYNVF 175 (247)
T ss_dssp EECCGGGEECHHHHHHHHHTTCEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHCCCEEEe
Confidence 34333334699999999999999764
No 48
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=35.38 E-value=62 Score=28.35 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=36.1
Q ss_pred EEEEccccChHHHHHHHHHHHHHhhhccCccchhhhHHhhcCCceEEEEEcCCCCCcchhHhhhhcc
Q 022297 221 GIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIRWLRKRSILSWLLVGGTRAIPHTFKRLQKTV 287 (299)
Q Consensus 221 ~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~~~ei~~l~~~~vd~~lvvG~~~s~~~~~~~~~~~~ 287 (299)
.+++-+|......+++.+.+.+....+...-...--.....+ .+.+++||. +.++.+++...
T Consensus 90 ~vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g--~l~~~~gg~---~~~~~~~~~ll 151 (287)
T 3pdu_A 90 GYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDG--TLIILAAGD---QSLFTDAGPAF 151 (287)
T ss_dssp EEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHT--CEEEEEEEC---HHHHHHTHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCCEEEECCccCCHHHHhcC--CEEEEEeCC---HHHHHHHHHHH
Confidence 578889999999999988887754443322111111111122 346677873 45677766543
No 49
>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1
Probab=35.38 E-value=1.8e+02 Score=25.03 Aligned_cols=26 Identities=12% Similarity=0.025 Sum_probs=20.3
Q ss_pred eEEeeccccCHHHHHHHHhcCcEEec
Q 022297 58 IWITNEIIHNPTVNKRLEEMAVQNIP 83 (299)
Q Consensus 58 VytlG~LIHN~~Vv~~L~~~GV~~v~ 83 (299)
.|..----.|+.+.+.|++.|...+.
T Consensus 138 ~fr~P~G~~~~~~~~~l~~~G~~~v~ 163 (240)
T 1ny1_A 138 YLRPPRGVFSEYVLKETKRLGYQTVF 163 (240)
T ss_dssp EECCGGGEECHHHHHHHHHTTCEEBC
T ss_pred EEeCCCCCCCHHHHHHHHHcCCEEEE
Confidence 44443356799999999999999875
No 50
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}
Probab=35.15 E-value=1.5e+02 Score=28.84 Aligned_cols=61 Identities=11% Similarity=0.019 Sum_probs=33.4
Q ss_pred EEEEccccChHHHHHHHHHHHHHhhhccCccchhhhHHhhcCCceEEEEEcCCCCCcchhHhhhhcc
Q 022297 221 GIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIRWLRKRSILSWLLVGGTRAIPHTFKRLQKTV 287 (299)
Q Consensus 221 ~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~~~ei~~l~~~~vd~~lvvG~~~s~~~~~~~~~~~~ 287 (299)
.|++-+|-...+++++.+.+.+......+.-...--.....+. .+++|| ++..+++++..+
T Consensus 104 iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~---~im~gg---~~e~~~~v~~ll 164 (497)
T 2p4q_A 104 IIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGP---SLMPGG---SEEAWPHIKNIF 164 (497)
T ss_dssp EEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC---EEEEEE---CGGGHHHHHHHH
T ss_pred EEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCC---eEEecC---CHHHHHHHHHHH
Confidence 4777777778888888888876433332221111111222333 356687 355677776544
No 51
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=34.70 E-value=60 Score=29.47 Aligned_cols=71 Identities=7% Similarity=0.042 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCeE------EeCC--ChhhHHHHHHHHH
Q 022297 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI------VDTT--CPWVSKVWTSVEK 139 (299)
Q Consensus 68 ~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~V------IDAT--CP~V~kv~~~v~~ 139 (299)
..|++.|+++|+.|+|+... +. -+ ..+.+++.|+.. +|.. =..+.+-.+++.+
T Consensus 145 ~~vm~~L~~~gL~FlDS~Ts---------~~-------S~---a~~~A~~~gvp~~~rdvFLD~~~~~~~I~~qL~~a~~ 205 (261)
T 2qv5_A 145 EPVMRDIGKRGLLFLDDGSS---------AQ-------SL---SGGIAKAISAPQGFADVLLDGEVTEASILRKLDDLER 205 (261)
T ss_dssp HHHHHHHHHTTCEEEECSCC---------TT-------CC---HHHHHHHHTCCEEECSEETTSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEcCCCC---------cc-------cH---HHHHHHHcCCCeEEeeeecCCCCCHHHHHHHHHHHHH
Confidence 35677899999999986321 11 11 233344445543 3432 2233333333444
Q ss_pred Hh-hCCCeEEEEecCCCccee
Q 022297 140 HK-KGDYTSIIHGKYSHEETV 159 (299)
Q Consensus 140 ~~-~~GY~IVIiGd~~HPEV~ 159 (299)
++ ++| ..|.||++ ||++.
T Consensus 206 ~Ar~~G-~AIaIGhp-~p~Ti 224 (261)
T 2qv5_A 206 IARRNG-QAIGVASA-FDESI 224 (261)
T ss_dssp HHHHHS-EEEEEEEC-CHHHH
T ss_pred HHHhcC-cEEEEeCC-CHHHH
Confidence 44 456 67889987 88754
No 52
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}
Probab=34.65 E-value=2.1e+02 Score=24.66 Aligned_cols=26 Identities=12% Similarity=0.068 Sum_probs=20.4
Q ss_pred eEEeeccccCHHHHHHHHhcCcEEec
Q 022297 58 IWITNEIIHNPTVNKRLEEMAVQNIP 83 (299)
Q Consensus 58 VytlG~LIHN~~Vv~~L~~~GV~~v~ 83 (299)
.|..----.|+.+.+.|++.|..++.
T Consensus 126 ~fr~P~G~~~~~~~~~l~~~G~~~~~ 151 (230)
T 2y8u_A 126 YMRPPYLETNELVLQVMRDLDYRVIS 151 (230)
T ss_dssp EECCGGGCCCHHHHHHHHHTTCEEEC
T ss_pred EEECCCCCCCHHHHHHHHHcCCEEEE
Confidence 44443445799999999999999885
No 53
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=34.34 E-value=4.8 Score=30.14 Aligned_cols=60 Identities=15% Similarity=0.258 Sum_probs=39.6
Q ss_pred eeccc-cCHHHHHHHHhcCcEEecCCccc---cccccccCCCEEEEcCCCCCHH-HHHHHHhcCCeEEe
Q 022297 61 TNEII-HNPTVNKRLEEMAVQNIPVEEGK---KQFDVVNKGDVVVLPAFGAAVE-EMVTLNNKNVQIVD 124 (299)
Q Consensus 61 lG~LI-HN~~Vv~~L~~~GV~~v~~~~~~---~~~~ei~~g~~VIIRAHGvs~~-v~~~l~~kgl~VID 124 (299)
+|+|+ .+|...+-|.+.|+..+..+... -....++++ -+.||++++ +.++|++.|+.|+.
T Consensus 15 I~elv~~~P~~~~vl~~~G~~~l~~p~~~~~~g~~~TL~~a----a~~~gid~d~l~~~L~~~g~~~~~ 79 (81)
T 2fi0_A 15 VAEVVDKHPEVLEILVELGFKPLANPLMRNTVGRKVSLKQG----SKLAGTPMDKIVRTLEANGYEVIG 79 (81)
T ss_dssp HHHHHHHCGGGHHHHTTTTCGGGGSHHHHTTHHHHCBHHHH----HHHHTCCHHHHHHHHHHTTCEEEC
T ss_pred HHHHHHHCHHHHHHHHHcCCccccCcHHHhhhcccCcHHHH----HHHcCCCHHHHHHHHHHcCCEeeC
Confidence 44444 46899999999998877542110 011223333 578999987 67788889998873
No 54
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Probab=33.61 E-value=1.7e+02 Score=28.22 Aligned_cols=79 Identities=10% Similarity=0.074 Sum_probs=40.7
Q ss_pred ccHHHHHHHHHHhhcCCCCCCCCCceeEEEEccccChHHHHHHHHHHHHHhhhccCccchhhhHHhhcCCceEEEEEcCC
Q 022297 194 STKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIRWLRKRSILSWLLVGGT 273 (299)
Q Consensus 194 ~~~e~f~~~~~~~~~~~~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~~~ei~~l~~~~vd~~lvvG~~ 273 (299)
+..++.++.+...+. + .. .|++-+|-...++.++.+.+.+......+.-...--.....+. .+++||.
T Consensus 90 ~~v~~vl~~l~~~l~----~----g~-iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~---~i~~gg~ 157 (480)
T 2zyd_A 90 AGTDAAIDSLKPYLD----K----GD-IIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGP---SIMPGGQ 157 (480)
T ss_dssp SHHHHHHHHHGGGCC----T----TC-EEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC---EEEEESC
T ss_pred HHHHHHHHHHHhhcC----C----CC-EEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCC---eEEecCC
Confidence 345566665543331 1 23 4667777777778888888876433332211100001122333 3677873
Q ss_pred CCCcchhHhhhhcc
Q 022297 274 RAIPHTFKRLQKTV 287 (299)
Q Consensus 274 ~s~~~~~~~~~~~~ 287 (299)
...+++++..+
T Consensus 158 ---~~~~~~v~~ll 168 (480)
T 2zyd_A 158 ---KEAYELVAPIL 168 (480)
T ss_dssp ---HHHHHHHHHHH
T ss_pred ---HHHHHHHHHHH
Confidence 55777776544
No 55
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=33.33 E-value=1.3e+02 Score=25.52 Aligned_cols=67 Identities=7% Similarity=-0.134 Sum_probs=49.3
Q ss_pred HHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCe-EEeCCChhhHHHHHHHHHHhhCCCeEE
Q 022297 70 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (299)
Q Consensus 70 Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~-VIDATCP~V~kv~~~v~~~~~~GY~IV 148 (299)
.++.|+++|+.+.= -.| .-.+.+...++..|+. +++...|...-+....+++.-....++
T Consensus 84 ~L~~L~~~G~~l~I-----------~T~--------~~~~~~~~~l~~lgi~~~f~~~k~K~~~l~~~~~~lg~~~~~~~ 144 (211)
T 3ij5_A 84 GIRCLITSDIDVAI-----------ITG--------RRAKLLEDRANTLGITHLYQGQSDKLVAYHELLATLQCQPEQVA 144 (211)
T ss_dssp HHHHHHHTTCEEEE-----------ECS--------SCCHHHHHHHHHHTCCEEECSCSSHHHHHHHHHHHHTCCGGGEE
T ss_pred HHHHHHHCCCEEEE-----------EeC--------CCHHHHHHHHHHcCCchhhcccCChHHHHHHHHHHcCcCcceEE
Confidence 78899998886431 111 1345566677777885 688888888888888888877788999
Q ss_pred EEecCCC
Q 022297 149 IHGKYSH 155 (299)
Q Consensus 149 IiGd~~H 155 (299)
.|||..+
T Consensus 145 ~vGDs~n 151 (211)
T 3ij5_A 145 YIGDDLI 151 (211)
T ss_dssp EEECSGG
T ss_pred EEcCCHH
Confidence 9999865
No 56
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=32.77 E-value=8.4 Score=33.76 Aligned_cols=34 Identities=24% Similarity=0.464 Sum_probs=28.1
Q ss_pred eEEEEEcCCCCCcch-hHhhhhccccCC--ccccccc
Q 022297 265 LSWLLVGGTRAIPHT-FKRLQKTVEFPH--TGSIVRR 298 (299)
Q Consensus 265 d~~lvvG~~~s~~~~-~~~~~~~~~~~~--~~~~~~~ 298 (299)
=+++++|++-|.-.| +++|.+...||| ||.++|.
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~ 66 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRA 66 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHH
Confidence 468899999999988 678999999999 5666663
No 57
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=32.38 E-value=80 Score=27.69 Aligned_cols=136 Identities=9% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCeEEEEecCCCcceeeecccCCeEEEEcChhhHHhhhhhhccCccCCCCccHHHHHH---HHHHhhcCC
Q 022297 134 WTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLE---KFKKAVSKG 210 (299)
Q Consensus 134 ~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~~~~~vv~~~~e~~~l~~~~~~~q~~~tt~~~e~f~~---~~~~~~~~~ 210 (299)
...++.+.+.||.|+++ +++-.-...+... ......+.+++-.-+++++.. ..++...++.+. .+...+.
T Consensus 16 ~~~a~~l~~~G~~V~~~-d~~~~~~~~~~~~--g~~~~~~~~~~~~~aDvvi~~--vp~~~~~~~v~~~~~~~~~~l~-- 88 (302)
T 2h78_A 16 APMATNLLKAGYLLNVF-DLVQSAVDGLVAA--GASAARSARDAVQGADVVISM--LPASQHVEGLYLDDDGLLAHIA-- 88 (302)
T ss_dssp HHHHHHHHHTTCEEEEE-CSSHHHHHHHHHT--TCEECSSHHHHHTTCSEEEEC--CSCHHHHHHHHHSSSCGGGSSC--
T ss_pred HHHHHHHHhCCCeEEEE-cCCHHHHHHHHHC--CCeEcCCHHHHHhCCCeEEEE--CCCHHHHHHHHcCchhHHhcCC--
Q ss_pred CCCCCCCceeEEEEccccChHHHHHHHHHHHHHhhhccCccchhhhHHhhcCCceEEEEEcCCCCCcchhHhhhhccc
Q 022297 211 FDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIRWLRKRSILSWLLVGGTRAIPHTFKRLQKTVE 288 (299)
Q Consensus 211 ~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~~~ei~~l~~~~vd~~lvvG~~~s~~~~~~~~~~~~~ 288 (299)
..-.|++-+|......+++.+.+.+....+...-...-........ +.+++|| ++.++++++...+
T Consensus 89 -------~~~~vi~~st~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~g~--l~~~~~g---~~~~~~~~~~ll~ 154 (302)
T 2h78_A 89 -------PGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGT--LTFMVGG---DAEALEKARPLFE 154 (302)
T ss_dssp -------SSCEEEECSCCCHHHHHHHHHHHHHTTCCEEECCEESCHHHHHHTC--EEEEEES---CHHHHHHHHHHHH
T ss_pred -------CCcEEEECCCCCHHHHHHHHHHHHHcCCEEEEEEccCChhhHhcCC--ceEEeCC---CHHHHHHHHHHHH
No 58
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=32.34 E-value=2.2e+02 Score=23.77 Aligned_cols=75 Identities=11% Similarity=0.198 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhhCCCCceEEeeccccCHHHH----HHHH------hcCcEEecCC-cc--------ccc--------c
Q 022297 39 VERAVQIAYEARKQFPEEKIWITNEIIHNPTVN----KRLE------EMAVQNIPVE-EG--------KKQ--------F 91 (299)
Q Consensus 39 VkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv----~~L~------~~GV~~v~~~-~~--------~~~--------~ 91 (299)
+.+|+++..+++.+ +++||++|.= +.-.+- .+|. +.|+..+--. +. ... +
T Consensus 32 i~~a~~~i~~al~~--~~~I~i~G~G-~S~~~A~~~~~~l~~~~~~~r~g~~~~~~~~d~~~~~a~~~d~~~~~~~~~~l 108 (201)
T 3trj_A 32 IAQAAKAMVSCLEN--GGKVLVCGNG-SSGVIAQHFTSKLLNHFEMERPPLPAIALTGDVATITAVGNHYGFSQIFAKQV 108 (201)
T ss_dssp HHHHHHHHHHHHHT--TCCEEEEEST-HHHHHHHHHHHHHHC-------CCCEEETTSCHHHHHHHHHHTCGGGTTHHHH
T ss_pred HHHHHHHHHHHHHC--CCEEEEEeCc-HhHHHHHHHHHHhcCccCCCCCCCceEEccCChHHHHHhccCCCHHHHHHHHH
Confidence 56777777776664 4678888841 222222 2233 3566544311 00 000 0
Q ss_pred c-cccCCCEE-EEcCCCCCHHHHHHHH
Q 022297 92 D-VVNKGDVV-VLPAFGAAVEEMVTLN 116 (299)
Q Consensus 92 ~-ei~~g~~V-IIRAHGvs~~v~~~l~ 116 (299)
. -+.++|.| +|+.-|-++++.+.++
T Consensus 109 ~~~~~~~Dvvi~iS~SG~t~~~~~~~~ 135 (201)
T 3trj_A 109 AALGNEDDILLVITTSGDSENILSAVE 135 (201)
T ss_dssp HHHCCTTCEEEEECSSSCCHHHHHHHH
T ss_pred HhhCCCCCEEEEEeCCCCCHHHHHHHH
Confidence 0 14567764 6888999999877653
No 59
>3gnh_A L-lysine, L-arginine carboxypeptidase CC2672; N-methyl phosphonate derivative of L- arginine, hydrolase; HET: KCX M3R; 1.70A {Caulobacter crescentus CB15} PDB: 3mtw_A*
Probab=31.87 E-value=2e+02 Score=25.46 Aligned_cols=94 Identities=12% Similarity=-0.073 Sum_probs=54.0
Q ss_pred CCcccHHHHHHHHHHHHhhCCC-CceEEeec----------cccCHH----HHHHHHhcCcEEecCCccccccccc-cCC
Q 022297 34 GFCWGVERAVQIAYEARKQFPE-EKIWITNE----------IIHNPT----VNKRLEEMAVQNIPVEEGKKQFDVV-NKG 97 (299)
Q Consensus 34 GFC~GVkRAV~~a~~~~~~~~~-~~VytlG~----------LIHN~~----Vv~~L~~~GV~~v~~~~~~~~~~ei-~~g 97 (299)
+.+.+.+.+.+.+.+..+...+ -++|.-|. .--.+. +++...+.|+.+.-...+.+.++.. ..|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~~~ik~~~~G~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~~~~~g 240 (403)
T 3gnh_A 161 FNSDSPDEARKAVRTLKKYGAQVIKICATGGVFSRGNEPGQQQLTYEEMKAVVDEAHMAGIKVAAHAHGASGIREAVRAG 240 (403)
T ss_dssp TCCCSHHHHHHHHHHHHHTTCSEEEEECBCCSSSSSCCTTCBCSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHcCCCEEEEeecCCcCCCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhC
Confidence 3567888888888887765321 14665543 233443 4445567798876432211111111 124
Q ss_pred CEEEEcCCCCCHHHHHHHHhcCCeEEeCCChh
Q 022297 98 DVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPW 129 (299)
Q Consensus 98 ~~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~ 129 (299)
-..|.=..-++++..+.++++|+.++ +||+
T Consensus 241 ~~~i~H~~~~~~~~~~~~~~~g~~~~--~~~~ 270 (403)
T 3gnh_A 241 VDTIEHASLVDDEGIKLAVQKGAYFS--MDIY 270 (403)
T ss_dssp CSEEEECTTCCHHHHHHHHHHTCEEE--CCCS
T ss_pred CCEEecCCcCCHHHHHHHHHCCCEEE--eeec
Confidence 33444333458999999999999886 4443
No 60
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=31.67 E-value=57 Score=29.50 Aligned_cols=58 Identities=12% Similarity=0.168 Sum_probs=40.6
Q ss_pred ccCCCEEEEcCCCCCH---HHHHHHHh--cCCeE-EeCCChhhHHHHHHHHHHhhCCCeEEEEecCC
Q 022297 94 VNKGDVVVLPAFGAAV---EEMVTLNN--KNVQI-VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYS 154 (299)
Q Consensus 94 i~~g~~VIIRAHGvs~---~v~~~l~~--kgl~V-IDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~ 154 (299)
+++|++|+ .||-+. .+...+.+ +.++| ++=|-|+-.- +..+.++.+.|-.+.+++|..
T Consensus 107 I~~g~~Il--T~~~s~Tv~~~l~~a~~~~~~~~V~v~etrP~~qG-~~~a~~L~~~gI~vtli~dsa 170 (276)
T 1vb5_A 107 IDDGDVII--THSFSSTVLEIIRTAKERKKRFKVILTESSPDYEG-LHLARELEFSGIEFEVITDAQ 170 (276)
T ss_dssp CCTTEEEE--CCSCCHHHHHHHHHHHHTTCCEEEEEECCTTTTHH-HHHHHHHHHTTCCEEEECGGG
T ss_pred ccCCCEEE--EeCCChHHHHHHHHHHHcCCeEEEEEeCCCcchhh-HHHHHHHHHCCCCEEEEcHHH
Confidence 34576544 255554 44555544 34555 6789999776 889999999999999999654
No 61
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=31.59 E-value=1.7e+02 Score=23.75 Aligned_cols=67 Identities=7% Similarity=-0.086 Sum_probs=45.6
Q ss_pred HHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCe-EEeCCChhhHHHHHHHHHHhhCCCeEE
Q 022297 70 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (299)
Q Consensus 70 Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~-VIDATCP~V~kv~~~v~~~~~~GY~IV 148 (299)
.++.|+++|+.+. |+ +-+-...+...++..|+. +.|...|.-.-++...+++.-....++
T Consensus 54 ~l~~L~~~g~~~~------------------i~-T~~~~~~~~~~~~~lgl~~~f~~~~~K~~~~~~~~~~~g~~~~~~~ 114 (189)
T 3mn1_A 54 GIKMLIASGVTTA------------------II-SGRKTAIVERRAKSLGIEHLFQGREDKLVVLDKLLAELQLGYEQVA 114 (189)
T ss_dssp HHHHHHHTTCEEE------------------EE-CSSCCHHHHHHHHHHTCSEEECSCSCHHHHHHHHHHHHTCCGGGEE
T ss_pred HHHHHHHCCCEEE------------------EE-ECcChHHHHHHHHHcCCHHHhcCcCChHHHHHHHHHHcCCChhHEE
Confidence 7888998887643 11 112345667777777885 666666666666666667666677899
Q ss_pred EEecCCC
Q 022297 149 IHGKYSH 155 (299)
Q Consensus 149 IiGd~~H 155 (299)
.|||..+
T Consensus 115 ~vGD~~n 121 (189)
T 3mn1_A 115 YLGDDLP 121 (189)
T ss_dssp EEECSGG
T ss_pred EECCCHH
Confidence 9998853
No 62
>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*
Probab=30.88 E-value=47 Score=31.23 Aligned_cols=31 Identities=13% Similarity=0.227 Sum_probs=26.3
Q ss_pred CEEEEc--CCCCCHHHHHHHHhcCCeEEeCCChh
Q 022297 98 DVVVLP--AFGAAVEEMVTLNNKNVQIVDTTCPW 129 (299)
Q Consensus 98 ~~VIIR--AHGvs~~v~~~l~~kgl~VIDATCP~ 129 (299)
| |+|- -||++.+....+.+.|..|||.+-||
T Consensus 81 D-vvf~a~p~~~s~~~a~~~~~~G~~vIDlSa~~ 113 (359)
T 4dpk_A 81 D-IIFSPLPQGAAGPVEEQFAKEGFPVISNSPDH 113 (359)
T ss_dssp C-EEEECCCTTTHHHHHHHHHHTTCEEEECSSTT
T ss_pred C-EEEECCChHHHHHHHHHHHHCCCEEEEcCCCc
Confidence 5 4454 49999999999999999999998775
No 63
>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*
Probab=30.88 E-value=47 Score=31.23 Aligned_cols=31 Identities=13% Similarity=0.227 Sum_probs=26.3
Q ss_pred CEEEEc--CCCCCHHHHHHHHhcCCeEEeCCChh
Q 022297 98 DVVVLP--AFGAAVEEMVTLNNKNVQIVDTTCPW 129 (299)
Q Consensus 98 ~~VIIR--AHGvs~~v~~~l~~kgl~VIDATCP~ 129 (299)
| |+|- -||++.+....+.+.|..|||.+-||
T Consensus 81 D-vvf~a~p~~~s~~~a~~~~~~G~~vIDlSa~~ 113 (359)
T 4dpl_A 81 D-IIFSPLPQGAAGPVEEQFAKEGFPVISNSPDH 113 (359)
T ss_dssp C-EEEECCCTTTHHHHHHHHHHTTCEEEECSSTT
T ss_pred C-EEEECCChHHHHHHHHHHHHCCCEEEEcCCCc
Confidence 5 4454 49999999999999999999998775
No 64
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=30.06 E-value=2.1e+02 Score=22.79 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=21.3
Q ss_pred ccCCCE-EEEcCCCCCHHHHHHH---HhcCCeEEeCCC
Q 022297 94 VNKGDV-VVLPAFGAAVEEMVTL---NNKNVQIVDTTC 127 (299)
Q Consensus 94 i~~g~~-VIIRAHGvs~~v~~~l---~~kgl~VIDATC 127 (299)
+.++|. |+|+.-|-++++.+.+ +++|..+|=-|+
T Consensus 80 ~~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~ 117 (180)
T 1jeo_A 80 YEKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVC 117 (180)
T ss_dssp CCTTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEES
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEeC
Confidence 455775 5788899998876443 445555544444
No 65
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=29.36 E-value=2e+02 Score=23.86 Aligned_cols=65 Identities=9% Similarity=-0.033 Sum_probs=48.2
Q ss_pred HHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCe-EEeCCChhhHHHHHHHHHHhhCCCeEEE
Q 022297 71 NKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYTSII 149 (299)
Q Consensus 71 v~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~-VIDATCP~V~kv~~~v~~~~~~GY~IVI 149 (299)
++.|+++|+.+. |+ +-+-.+.+...+++.|+. +++...|...-+...++++.-...++++
T Consensus 61 l~~L~~~G~~~~------------------iv-T~~~~~~~~~~l~~lgi~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~ 121 (195)
T 3n07_A 61 VKALMNAGIEIA------------------II-TGRRSQIVENRMKALGISLIYQGQDDKVQAYYDICQKLAIAPEQTGY 121 (195)
T ss_dssp HHHHHHTTCEEE------------------EE-CSSCCHHHHHHHHHTTCCEEECSCSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred HHHHHHCCCEEE------------------EE-ECcCHHHHHHHHHHcCCcEEeeCCCCcHHHHHHHHHHhCCCHHHEEE
Confidence 777888877543 11 122356677777888875 5888889888888888888777788999
Q ss_pred EecCC
Q 022297 150 HGKYS 154 (299)
Q Consensus 150 iGd~~ 154 (299)
|||..
T Consensus 122 vGD~~ 126 (195)
T 3n07_A 122 IGDDL 126 (195)
T ss_dssp EESSG
T ss_pred EcCCH
Confidence 99975
No 66
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=28.97 E-value=1.7e+02 Score=25.40 Aligned_cols=45 Identities=18% Similarity=0.284 Sum_probs=28.1
Q ss_pred ceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCH
Q 022297 57 KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV 109 (299)
Q Consensus 57 ~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~ 109 (299)
++....|+--+|..++.|.++=-..... ..++++.||+.+||.|.
T Consensus 114 ~i~~~~pl~~~p~~i~~la~~i~~~~~~--------~~~~~~~lll~~HGs~~ 158 (269)
T 2xvy_A 114 RVSVGLPLIGTTADAEAVAEALVASLPA--------DRKPGEPVVFMGHGTPH 158 (269)
T ss_dssp EEEEECCSSCSHHHHHHHHHHHHHHSCT--------TCCTTCCEEEEECCCSS
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHhchh--------hccCCceEEEEECCCCh
Confidence 4677778888888877775531111110 01234579999999996
No 67
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=28.07 E-value=70 Score=28.57 Aligned_cols=129 Identities=15% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCeEEEEecCCCcceeeecccCCeEEEEcChhhHHhhhhhhccCccCCCCccHHHHHH--HHHHhhcCCC
Q 022297 134 WTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLE--KFKKAVSKGF 211 (299)
Q Consensus 134 ~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~~~~~vv~~~~e~~~l~~~~~~~q~~~tt~~~e~f~~--~~~~~~~~~~ 211 (299)
...++.+.+.||.|+++ +++-.....+... ......+.+++-.-+++++.. ..++...++.+. .+....
T Consensus 22 ~~~A~~l~~~G~~V~~~-dr~~~~~~~~~~~--g~~~~~~~~e~~~~aDvVi~~--vp~~~~~~~v~~~~~l~~~~---- 92 (306)
T 3l6d_A 22 TIMAQVLLKQGKRVAIW-NRSPGKAAALVAA--GAHLCESVKAALSASPATIFV--LLDNHATHEVLGMPGVARAL---- 92 (306)
T ss_dssp HHHHHHHHHTTCCEEEE-CSSHHHHHHHHHH--TCEECSSHHHHHHHSSEEEEC--CSSHHHHHHHHTSTTHHHHT----
T ss_pred HHHHHHHHHCCCEEEEE-eCCHHHHHHHHHC--CCeecCCHHHHHhcCCEEEEE--eCCHHHHHHHhcccchhhcc----
Q ss_pred CCCCCCceeEEEEccccChHHHHHHHHHHHHHhhhccCc------cchhhhHHhhcCCceEEEEEcCCCCCcchhHhhhh
Q 022297 212 DPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGV------ENMQCIRWLRKRSILSWLLVGGTRAIPHTFKRLQK 285 (299)
Q Consensus 212 d~~~~~~kv~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~------~~~~ei~~l~~~~vd~~lvvG~~~s~~~~~~~~~~ 285 (299)
..-.|++-+|.+....+++.+.+++....+... .. ...-...+++|| ++..+.|++.
T Consensus 93 ------~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~--------~~~~~~~i~~gg---~~~~~~~~~~ 155 (306)
T 3l6d_A 93 ------AHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRN--------VGHRESHSIHTG---DREAFEQHRA 155 (306)
T ss_dssp ------TTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGG--------TTCTTCEEEEEE---CHHHHHHHHH
T ss_pred ------CCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCccc--------ccCCceEEEEcC---CHHHHHHHHH
Q ss_pred ccc
Q 022297 286 TVE 288 (299)
Q Consensus 286 ~~~ 288 (299)
.++
T Consensus 156 ll~ 158 (306)
T 3l6d_A 156 LLE 158 (306)
T ss_dssp HHH
T ss_pred HHH
No 68
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=28.06 E-value=2.7e+02 Score=26.89 Aligned_cols=42 Identities=10% Similarity=0.075 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCeE-EeC-CChhhHHHHHHHHHHhhCCC-eEEEEecC
Q 022297 109 VEEMVTLNNKNVQI-VDT-TCPWVSKVWTSVEKHKKGDY-TSIIHGKY 153 (299)
Q Consensus 109 ~~v~~~l~~kgl~V-IDA-TCP~V~kv~~~v~~~~~~GY-~IVIiGd~ 153 (299)
-++.++|++.|+.+ +|- .-|-.++-. +...+.|. .+||+|+.
T Consensus 436 ~~l~~~Lr~~Gi~ve~~~~~~~~l~~q~---k~A~~~g~~~~viiG~~ 480 (517)
T 4g85_A 436 LKLVSELWDAGIKAELLYKKNPKLLNQL---QYCEEAGIPLVAIIGEQ 480 (517)
T ss_dssp HHHHHHHHHTTCCEEECSSSSCCHHHHH---HHHHHHCCCEEEEECHH
T ss_pred HHHHHHHHHCCCcEEEEeCCCCCHHHHH---HHHHHCCCCEEEEECCh
Confidence 35677888888887 552 334344433 34444455 45677754
No 69
>2e67_A Hypothetical protein TTHB029; NPPSFA, national project on protein ST and functional analyses, structural genomics; 2.90A {Thermus thermophilus}
Probab=27.66 E-value=27 Score=31.41 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=19.7
Q ss_pred ceE-EEEeCCCCCcccHHHHHHHH
Q 022297 24 NVK-VKLAESYGFCWGVERAVQIA 46 (299)
Q Consensus 24 ~M~-IilA~~~GFC~GVkRAV~~a 46 (299)
.|+ |+-|.-.|+|.||.+||..+
T Consensus 12 ~~~LIvnADDfGls~~vN~gI~~a 35 (264)
T 2e67_A 12 RRVLILHHDDLGLTHAQNGAYQAL 35 (264)
T ss_dssp SEEEEEEEEEETSCHHHHHHHHHH
T ss_pred cceEEEecccCCCCHhHHHHHHHH
Confidence 356 45599999999999999988
No 70
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=27.39 E-value=2.6e+02 Score=22.99 Aligned_cols=49 Identities=16% Similarity=0.168 Sum_probs=28.8
Q ss_pred CEEEEcCCCCC-----HHHHHHHHhcCCeE-EeCCChhhHHHHHHHHHHhhCCCeEEEE
Q 022297 98 DVVVLPAFGAA-----VEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYTSIIH 150 (299)
Q Consensus 98 ~~VIIRAHGvs-----~~v~~~l~~kgl~V-IDATCP~V~kv~~~v~~~~~~GY~IVIi 150 (299)
|.|++ |+.+ .+..+.+++.|+.+ +|..||.- .-..++++.+.|-..|.+
T Consensus 79 d~v~v--~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t--~~~~~~~~~~~g~d~i~v 133 (211)
T 3f4w_A 79 DYVTV--LGVTDVLTIQSCIRAAKEAGKQVVVDMICVDD--LPARVRLLEEAGADMLAV 133 (211)
T ss_dssp SEEEE--ETTSCHHHHHHHHHHHHHHTCEEEEECTTCSS--HHHHHHHHHHHTCCEEEE
T ss_pred CEEEE--eCCCChhHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHHcCCCEEEE
Confidence 44555 5554 45677788888876 46555531 234455666666665554
No 71
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=27.02 E-value=2e+02 Score=22.47 Aligned_cols=62 Identities=11% Similarity=0.048 Sum_probs=41.5
Q ss_pred CCceEEeecccc-CHH-HHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCeEEeC
Q 022297 55 EEKIWITNEIIH-NPT-VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDT 125 (299)
Q Consensus 55 ~~~VytlG~LIH-N~~-Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~VIDA 125 (299)
+..+...|.|-. +.. ..+.+++.|-.+..+... .=+.||.-. ...+.-+++|++.|+.|||-
T Consensus 35 G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sVSk--------kTd~LV~G~-~~g~sK~~kA~~lgI~Ii~E 98 (109)
T 2k6g_A 35 GLIFVITGVLESIERDEAKSLIERYGGKVTGNVSK--------KTNYLVMGR-DSGQSKSDKAAALGTKIIDE 98 (109)
T ss_dssp TCEEEEESBCSSCCHHHHHHHHHHTTCEEESSCCT--------TCCEEEECB-CCCHHHHHHHHHHTCEEECH
T ss_pred CCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCcccC--------CceEEEECC-CCChHHHHHHHHcCCeEEeH
Confidence 456888899954 444 445668899998865421 123455543 33456788899999999973
No 72
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=26.86 E-value=3.5e+02 Score=24.29 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=27.2
Q ss_pred eeEEEEccccChHHHHHHHHHHHHHhhhccCccc
Q 022297 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVEN 252 (299)
Q Consensus 219 kv~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~ 252 (299)
+..++-++-++..+.+++.+++++...+..||..
T Consensus 96 ~~vVi~t~G~~~~~~~~l~~~A~~~gi~viGPNc 129 (294)
T 2yv1_A 96 ELIVVITEHIPVHDTMEFVNYAEDVGVKIIGPNT 129 (294)
T ss_dssp SEEEECCSCCCHHHHHHHHHHHHHHTCEEECSSC
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHcCCEEEcCCC
Confidence 5556778888988889999999998887777654
No 73
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=26.77 E-value=2.6e+02 Score=23.62 Aligned_cols=91 Identities=13% Similarity=0.176 Sum_probs=48.5
Q ss_pred HHHHHHHHHH-HHhhCCCCceEEeecccc---CHHHHHHHHhcCcEEec--CCcc-ccccccccCCCE-EEEcCCCCCHH
Q 022297 39 VERAVQIAYE-ARKQFPEEKIWITNEIIH---NPTVNKRLEEMAVQNIP--VEEG-KKQFDVVNKGDV-VVLPAFGAAVE 110 (299)
Q Consensus 39 VkRAV~~a~~-~~~~~~~~~VytlG~LIH---N~~Vv~~L~~~GV~~v~--~~~~-~~~~~ei~~g~~-VIIRAHGvs~~ 110 (299)
+++|+++..+ ++.. .++||++|-=-= -.....+|...|..+.- +.+. ...+..+.++|. |+|+.-|-+++
T Consensus 44 i~~~~~~i~~~a~~~--a~~I~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~DlvI~iS~SG~t~~ 121 (220)
T 3etn_A 44 YEKAVELIVEQIHRK--KGKLVTSGMGKAGQIAMNIATTFCSTGIPSVFLHPSEAQHGDLGILQENDLLLLISNSGKTRE 121 (220)
T ss_dssp HHHHHHHHHHHTTTT--CCCEEEECSHHHHHHHHHHHHHHHHTTCCEEECCTTGGGBTGGGGCCTTCEEEEECSSSCCHH
T ss_pred HHHHHHHHHhHhhcc--CCEEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhhccCCCCCEEEEEcCCCCCHH
Confidence 4555554443 2221 357888884221 11233456667765432 2111 012234556776 46888899988
Q ss_pred HHH---HHHh--cCCeEEeCCChhhH
Q 022297 111 EMV---TLNN--KNVQIVDTTCPWVS 131 (299)
Q Consensus 111 v~~---~l~~--kgl~VIDATCP~V~ 131 (299)
+.+ .+++ +|..+|=-||..-.
T Consensus 122 ~i~~~~~ak~~~~Ga~vI~IT~~~~s 147 (220)
T 3etn_A 122 IVELTQLAHNLNPGLKFIVITGNPDS 147 (220)
T ss_dssp HHHHHHHHHHHCTTCEEEEEESCTTS
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCC
Confidence 764 4556 77777766654433
No 74
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=26.68 E-value=3.2e+02 Score=23.81 Aligned_cols=90 Identities=10% Similarity=-0.021 Sum_probs=47.8
Q ss_pred ccchHHHHHHhcCceeeeeceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhc-CcEEec
Q 022297 5 YTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM-AVQNIP 83 (299)
Q Consensus 5 ~~s~~~~~~~~~~~~~~~~~M~IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~-GV~~v~ 83 (299)
-+|--|+.++-.+.-++..+++|++.. |-+-|...+..+++. +..|.+.-|=++ +. ++.|.+. ++..+.
T Consensus 12 ~~~~~~~~~~~~Pifl~L~gk~VLVVG------gG~va~~ka~~Ll~~--GA~VtVvap~~~-~~-l~~l~~~~~i~~i~ 81 (223)
T 3dfz_A 12 HSSGHIEGRHMYTVMLDLKGRSVLVVG------GGTIATRRIKGFLQE--GAAITVVAPTVS-AE-INEWEAKGQLRVKR 81 (223)
T ss_dssp ----------CCEEEECCTTCCEEEEC------CSHHHHHHHHHHGGG--CCCEEEECSSCC-HH-HHHHHHTTSCEEEC
T ss_pred cccCcccccCccccEEEcCCCEEEEEC------CCHHHHHHHHHHHHC--CCEEEEECCCCC-HH-HHHHHHcCCcEEEE
Confidence 345566666666666777789999883 336677777777765 346888777544 33 4556554 477665
Q ss_pred CCccccccccccCCCEEEEcCCCCC
Q 022297 84 VEEGKKQFDVVNKGDVVVLPAFGAA 108 (299)
Q Consensus 84 ~~~~~~~~~ei~~g~~VIIRAHGvs 108 (299)
..-. .+++. +.-+||-|=|.+
T Consensus 82 ~~~~---~~dL~-~adLVIaAT~d~ 102 (223)
T 3dfz_A 82 KKVG---EEDLL-NVFFIVVATNDQ 102 (223)
T ss_dssp SCCC---GGGSS-SCSEEEECCCCT
T ss_pred CCCC---HhHhC-CCCEEEECCCCH
Confidence 3211 12332 333666666655
No 75
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=26.52 E-value=88 Score=25.58 Aligned_cols=49 Identities=12% Similarity=0.028 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcce
Q 022297 109 VEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEET 158 (299)
Q Consensus 109 ~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV 158 (299)
.+..++|+++|..|+=+|+=--.........+.+.|....+++. +|||-
T Consensus 30 ~~al~~l~~~G~~iii~TgR~~~~~~~~~~~l~~~gi~~~~I~~-n~P~~ 78 (142)
T 2obb_A 30 VETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLEFYAANK-DYPEE 78 (142)
T ss_dssp HHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTTCCCSEESS-SSTTC
T ss_pred HHHHHHHHHCCCEEEEEeCCCcccHHHHHHHHHHcCCCeEEEEc-CCchh
Confidence 67788899999999999984333344444555566776655654 88983
No 76
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*
Probab=26.45 E-value=2e+02 Score=27.71 Aligned_cols=66 Identities=14% Similarity=0.134 Sum_probs=37.0
Q ss_pred EEEccccChHHHHHHHHHHHHHh---------hhccCccchhhhHHhh-cCCceEEEEEcCCCCCc--chhHhhhhccc
Q 022297 222 IANQTTMLKGETEEIGKLVEKTM---------MRKFGVENMQCIRWLR-KRSILSWLLVGGTRAIP--HTFKRLQKTVE 288 (299)
Q Consensus 222 Iv~QTT~~~~~~~~i~~~l~~~~---------~~~~g~~~~~ei~~l~-~~~vd~~lvvG~~~s~~--~~~~~~~~~~~ 288 (299)
|++-+|.+.+.++++.+.+.+.. .-.++|+...+-..+. -...+ -+|+|+.+..+ ..+++++...+
T Consensus 124 VV~~STv~~gt~~~l~~~l~~~~~~g~~~~~~~v~~~Pe~~~eG~~~~~~~~p~-~iviG~~~~~~~~~~~~~~~~l~~ 201 (478)
T 2y0c_A 124 IVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPEFLKEGAAVDDFTRPD-RIVIGCDDDVPGERARELMKKLYA 201 (478)
T ss_dssp EEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCCCCCTTCHHHHHHSCS-CEEEECCSSHHHHHHHHHHHHHTG
T ss_pred EEEeCCcCCCchHHHHHHHHHHhcCCCCCccEEEEEChhhhcccceeeccCCCC-EEEEEECCCcccHHHHHHHHHHHH
Confidence 56666888888888888887642 1245566654443210 01122 35678753211 56777766544
No 77
>3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A*
Probab=25.82 E-value=4.1e+02 Score=24.78 Aligned_cols=120 Identities=13% Similarity=-0.002 Sum_probs=76.3
Q ss_pred CceeeeeceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeeccccC-HHHHHHHHhcCcEEecCCcccccccccc
Q 022297 17 GFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHN-PTVNKRLEEMAVQNIPVEEGKKQFDVVN 95 (299)
Q Consensus 17 ~~~~~~~~M~IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN-~~Vv~~L~~~GV~~v~~~~~~~~~~ei~ 95 (299)
++.+..|..++. ....++----+|++..+-++..+. +.+|.+--.--+. +.+++.|++.|+..
T Consensus 170 ~tgikaG~I~~~-~~~~~~t~~E~k~frA~a~aa~et-G~Pv~iHt~~~~~~~e~l~iL~eeG~~~-------------- 233 (360)
T 3tn4_A 170 DTGIKAGVIKLA-SSKGRITEYEKMFFRAAARAQKET-GAVIITHTQEGTMGPEQAAYLLEHGADP-------------- 233 (360)
T ss_dssp TSCCCCSEEEEE-CBTTBCCHHHHHHHHHHHHHHHHH-CCEEEEECSTTCCHHHHHHHHHHTTCCG--------------
T ss_pred cCCCcceEEEEE-ccCCCCCHHHHHHHHHHHHHHHHh-CCcEEEEcCcccCCHHHHHHHHHcCCCC--------------
Confidence 567777877765 444567777888888887777664 4566543222222 25677888777621
Q ss_pred CCCEEEEcC-CCCCHHHHHHHHhcCCeE-EeC-------CChhhHHHHHHHHHHhhCCC--eEEEEecC
Q 022297 96 KGDVVVLPA-FGAAVEEMVTLNNKNVQI-VDT-------TCPWVSKVWTSVEKHKKGDY--TSIIHGKY 153 (299)
Q Consensus 96 ~g~~VIIRA-HGvs~~v~~~l~~kgl~V-IDA-------TCP~V~kv~~~v~~~~~~GY--~IVIiGd~ 153 (299)
..+||.=+ ...+++..+++.++|+.| +|. ++|-..+--+.++++.++|| +|++=.|.
T Consensus 234 -~~vvi~H~~~~~d~~~~~~~l~~G~yl~fD~iG~~~~~~~p~d~~r~~~l~~lv~~g~~drILLstDa 301 (360)
T 3tn4_A 234 -KKIVIGHMCDNTDPDYHRKTLAYGVYIAFDRFGIQGMVGAPTDEERVRTLLALLRDGYEKQIMLSHDT 301 (360)
T ss_dssp -GGEEECCGGGCCCHHHHHHHHTTTCEEEECCTTCCCSTTCCCHHHHHHHHHHHHHTTCGGGEEECCCC
T ss_pred -CceEEEcCCCCCCHHHHHHHHHcCCEEEEcccccccccCCCChHHHHHHHHHHHHhcCcceEEEecCC
Confidence 11233221 345788889999999998 674 34544555556778888887 57765553
No 78
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=25.79 E-value=65 Score=29.17 Aligned_cols=63 Identities=8% Similarity=0.022 Sum_probs=40.6
Q ss_pred eEEEEccccChHHHHHHHHHHHHHhhhccCccchhhhHHhhcCCceEEEEEcCCCCCcchhHhhhhcc
Q 022297 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIRWLRKRSILSWLLVGGTRAIPHTFKRLQKTV 287 (299)
Q Consensus 220 v~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~~~ei~~l~~~~vd~~lvvG~~~s~~~~~~~~~~~~ 287 (299)
-.++.=||.+.+.++++.+.+++....+...-.--- .+- +..=.+.+.|||.. ..|.|.+..+
T Consensus 91 ~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaPVsGg-~~~-A~~G~L~imvGG~~---~~~~~~~p~l 153 (300)
T 3obb_A 91 TLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGG-TAG-AAAGTLTFMVGGDA---EALEKARPLF 153 (300)
T ss_dssp CEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESC-HHH-HHHTCEEEEEESCH---HHHHHHHHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCCCC-HHH-HHhCCEEEEEeCCH---HHHHHHHHHH
Confidence 368999999999999999999887766653211000 011 22234677888854 4677766543
No 79
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=25.38 E-value=3.3e+02 Score=24.35 Aligned_cols=34 Identities=6% Similarity=-0.104 Sum_probs=26.0
Q ss_pred eeEEEEccccChHHHHHHHHHHHHHhhhccCccc
Q 022297 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVEN 252 (299)
Q Consensus 219 kv~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~ 252 (299)
+..++.+|-++..+.+++.+++++...+..||..
T Consensus 90 ~~vVi~t~G~~~~~~~~l~~~a~~~gi~vigPNc 123 (288)
T 1oi7_A 90 PLIVLITEGIPTLDMVRAVEEIKALGSRLIGGNC 123 (288)
T ss_dssp SEEEECCSCCCHHHHHHHHHHHHHHTCEEEESSS
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCC
Confidence 5456777888888888999999888777766543
No 80
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=24.70 E-value=1.4e+02 Score=23.89 Aligned_cols=38 Identities=13% Similarity=0.147 Sum_probs=25.3
Q ss_pred ccCCCE-EEEcCCCCCHHHHH---HHHhcCCeEEeCCChhhH
Q 022297 94 VNKGDV-VVLPAFGAAVEEMV---TLNNKNVQIVDTTCPWVS 131 (299)
Q Consensus 94 i~~g~~-VIIRAHGvs~~v~~---~l~~kgl~VIDATCP~V~ 131 (299)
+.++|. |+|+.-|-++++.+ .++++|..+|=-|+..-.
T Consensus 85 ~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s 126 (187)
T 3sho_A 85 LRPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSVS 126 (187)
T ss_dssp CCTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCTTS
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 345665 56888899998764 455677777766664433
No 81
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=24.53 E-value=2.6e+02 Score=22.76 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=26.4
Q ss_pred cccCCCE-EEEcCCCCCHHHH---HHHHhcCCeEEeCCChhhH
Q 022297 93 VVNKGDV-VVLPAFGAAVEEM---VTLNNKNVQIVDTTCPWVS 131 (299)
Q Consensus 93 ei~~g~~-VIIRAHGvs~~v~---~~l~~kgl~VIDATCP~V~ 131 (299)
.+.++|. |+|+.-|-++++. +.++++|.++|=-|+..-.
T Consensus 89 ~~~~~dvvI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s 131 (201)
T 3fxa_A 89 VLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDS 131 (201)
T ss_dssp GCCTTCEEEEECSSSCCHHHHTTHHHHHHHTCEEEEEESCTTS
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 3456776 5688889999876 5566777777766654433
No 82
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=24.31 E-value=3.8e+02 Score=24.07 Aligned_cols=34 Identities=6% Similarity=0.004 Sum_probs=26.9
Q ss_pred eeEEEEccccChHHHHHHHHHHHHHhhhccCccc
Q 022297 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVEN 252 (299)
Q Consensus 219 kv~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~ 252 (299)
+..++-+|-++..+-+++.+++++...+..||..
T Consensus 97 ~~vVi~t~G~~~~~~~~l~~~A~~~gi~viGPNc 130 (297)
T 2yv2_A 97 RLVVVITEGIPVHDTMRFVNYARQKGATIIGPNC 130 (297)
T ss_dssp SEEEECCCCCCHHHHHHHHHHHHHHTCEEECSSS
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHcCCEEEcCCC
Confidence 5556778888888889999999988887777654
No 83
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=24.20 E-value=3.8e+02 Score=23.80 Aligned_cols=82 Identities=9% Similarity=0.033 Sum_probs=52.6
Q ss_pred CceEEeeccccCHHHHHHHHhcCcEEecCCccccccccc-cCCCEEEEcCCCCCHHHHHHHH--------hcCCeEEeCC
Q 022297 56 EKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVLPAFGAAVEEMVTLN--------NKNVQIVDTT 126 (299)
Q Consensus 56 ~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei-~~g~~VIIRAHGvs~~v~~~l~--------~kgl~VIDAT 126 (299)
-.|+.+. .|+...++|.+.|+.+.++. +++ .+-|.| |-+=..+..+.+.+. ..|..|||.+
T Consensus 55 ~~V~~~d---r~~~~~~~l~~~g~~~~~~~------~e~~~~aDvV-i~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~s 124 (320)
T 4dll_A 55 YALQVWN---RTPARAASLAALGATIHEQA------RAAARDADIV-VSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMA 124 (320)
T ss_dssp CEEEEEC---SCHHHHHHHHTTTCEEESSH------HHHHTTCSEE-EECCSSHHHHHHHHTTTCHHHHCCTTCEEEECS
T ss_pred CeEEEEc---CCHHHHHHHHHCCCEeeCCH------HHHHhcCCEE-EEECCCHHHHHHHHcchhHHhhCCCCCEEEecC
Confidence 3577664 58889999999999887642 333 334544 444343344444332 4688899988
Q ss_pred ChhhHHHHHHHHHHhhCCCeE
Q 022297 127 CPWVSKVWTSVEKHKKGDYTS 147 (299)
Q Consensus 127 CP~V~kv~~~v~~~~~~GY~I 147 (299)
=-........++.+.+.|-..
T Consensus 125 t~~~~~~~~~~~~~~~~g~~~ 145 (320)
T 4dll_A 125 SITPREARDHAARLGALGIAH 145 (320)
T ss_dssp CCCHHHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHHHHcCCEE
Confidence 766666777777777777553
No 84
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=24.11 E-value=1e+02 Score=28.48 Aligned_cols=58 Identities=5% Similarity=0.042 Sum_probs=39.8
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCeEEeC-CChhhHHHHHHH------HHHhh-CCCeEEEEecCCC
Q 022297 97 GDVVVLPAFGAAVEEMVTLNNKNVQIVDT-TCPWVSKVWTSV------EKHKK-GDYTSIIHGKYSH 155 (299)
Q Consensus 97 g~~VIIRAHGvs~~v~~~l~~kgl~VIDA-TCP~V~kv~~~v------~~~~~-~GY~IVIiGd~~H 155 (299)
.|.+++|..+ ...+.+.++--++.||+| -|..-.=.|..+ +.+.. +|.+|.++||-.|
T Consensus 95 ~D~iviR~~~-~~~~~~la~~~~vPVINaG~g~~~HPtQ~LaDl~Ti~e~~g~l~gl~va~vGD~~~ 160 (299)
T 1pg5_A 95 SDGIVMRHKY-DGASRFASEISDIPVINAGDGKHEHPTQAVIDIYTINKHFNTIDGLVFALLGDLKY 160 (299)
T ss_dssp CSEEEEEESS-BTHHHHHHHHCSSCEEEEEETTTBCHHHHHHHHHHHHHHHSCSTTCEEEEEECCSS
T ss_pred CCEEEEeCCC-hhHHHHHHHhCCCCEEeCCCCCCcCcHHHHHHHHHHHHHhCCcCCcEEEEECCCCC
Confidence 4679999543 334555666778999999 655544445443 33333 7999999999877
No 85
>1vpq_A Hypothetical protein TM1631; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.1.32.1
Probab=24.00 E-value=69 Score=29.04 Aligned_cols=49 Identities=6% Similarity=-0.048 Sum_probs=30.7
Q ss_pred EeeccccCHHHHHHHHhcCcEEec--CCcc---ccccccccCCCEEEEcCCCCCH
Q 022297 60 ITNEIIHNPTVNKRLEEMAVQNIP--VEEG---KKQFDVVNKGDVVVLPAFGAAV 109 (299)
Q Consensus 60 tlG~LIHN~~Vv~~L~~~GV~~v~--~~~~---~~~~~ei~~g~~VIIRAHGvs~ 109 (299)
.-++=-.++.+.+-|++.|+..|- .... .-. .....++.+.+|-||-+.
T Consensus 156 ~Rh~sW~~~~~~~lL~~~~v~~V~~D~~~~~~~~P~-~~~~t~~~~yvRlHG~~~ 209 (273)
T 1vpq_A 156 FRHYSWDREETYEFLRNHGITFVVVDEPKLPGLFPY-RPITTTDYAYFRFHGRNE 209 (273)
T ss_dssp CCBGGGCSHHHHHHHHHHTCEEEEEECCCCTTBCCC-CCCCSSSEEEEEECCCCT
T ss_pred ccCchhccHHHHHHHHHcCcEEEEeCCCCCCCCCCc-ccccCCCceEEEEeCCCc
Confidence 334444578999999999998663 2110 000 111135789999999875
No 86
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=23.96 E-value=1.3e+02 Score=23.93 Aligned_cols=36 Identities=19% Similarity=0.112 Sum_probs=29.7
Q ss_pred EEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHH
Q 022297 100 VVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWT 135 (299)
Q Consensus 100 VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~ 135 (299)
+++-+++...+..+.+++.|++++=--|+-+..-+.
T Consensus 98 i~~~~g~~~~~~~~~a~~~Gir~vgpnc~g~~~~~~ 133 (140)
T 1iuk_A 98 VWLQSGIRHPEFEKALKEAGIPVVADRCLMVEHKRL 133 (140)
T ss_dssp EEECTTCCCHHHHHHHHHTTCCEEESCCHHHHHHHH
T ss_pred EEEcCCcCHHHHHHHHHHcCCEEEcCCccceEChhh
Confidence 567788888999999999999999888998876654
No 87
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=23.95 E-value=2.3e+02 Score=24.53 Aligned_cols=82 Identities=9% Similarity=-0.031 Sum_probs=51.7
Q ss_pred CceEEeeccccCHHHHHHHHhcCcEEecCCccccccccc-cCCCEEEEcCCCCCHHHHHHH---------HhcCCeEEeC
Q 022297 56 EKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVLPAFGAAVEEMVTL---------NNKNVQIVDT 125 (299)
Q Consensus 56 ~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei-~~g~~VIIRAHGvs~~v~~~l---------~~kgl~VIDA 125 (299)
-.|+.+. .|+...+.|.+.|+...++. +++ .+-| +||-+=..++.+.+.+ ...|..|||.
T Consensus 25 ~~V~~~d---r~~~~~~~~~~~g~~~~~~~------~~~~~~ad-vvi~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~ 94 (287)
T 3pdu_A 25 FDVTVWN---RNPAKCAPLVALGARQASSP------AEVCAACD-ITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDM 94 (287)
T ss_dssp CCEEEEC---SSGGGGHHHHHHTCEECSCH------HHHHHHCS-EEEECCSSHHHHHHHHHSTTCGGGTCCTTCEEEEC
T ss_pred CeEEEEc---CCHHHHHHHHHCCCeecCCH------HHHHHcCC-EEEEEcCCHHHHHHHHcCchhhhhcccCCCEEEEC
Confidence 3577664 58888899999999877542 332 3345 4444434344444443 1357788998
Q ss_pred CChhhHHHHHHHHHHhhCCCeE
Q 022297 126 TCPWVSKVWTSVEKHKKGDYTS 147 (299)
Q Consensus 126 TCP~V~kv~~~v~~~~~~GY~I 147 (299)
+--.........+.+.+.|...
T Consensus 95 st~~~~~~~~~~~~~~~~g~~~ 116 (287)
T 3pdu_A 95 STVDDETSTAIGAAVTARGGRF 116 (287)
T ss_dssp SCCCHHHHHHHHHHHHHTTCEE
T ss_pred CCCCHHHHHHHHHHHHHcCCEE
Confidence 8766666666667777777553
No 88
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=23.79 E-value=1.2e+02 Score=29.27 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=38.2
Q ss_pred CceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCH--HHHHHHHhcCCeEE
Q 022297 56 EKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV--EEMVTLNNKNVQIV 123 (299)
Q Consensus 56 ~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~--~v~~~l~~kgl~VI 123 (299)
-.|+.. +.--+ ...+.|++.|+.+...- +.+.+.+-| +|+-+=|+|+ ..+++++++|+.|+
T Consensus 47 ~~V~~~-D~~~~-~~~~~l~~~gi~~~~g~----~~~~~~~~d-~vV~Spgi~~~~p~~~~a~~~gi~v~ 109 (494)
T 4hv4_A 47 YQISGS-DLAPN-SVTQHLTALGAQIYFHH----RPENVLDAS-VVVVSTAISADNPEIVAAREARIPVI 109 (494)
T ss_dssp CEEEEE-CSSCC-HHHHHHHHTTCEEESSC----CGGGGTTCS-EEEECTTSCTTCHHHHHHHHTTCCEE
T ss_pred CeEEEE-ECCCC-HHHHHHHHCCCEEECCC----CHHHcCCCC-EEEECCCCCCCCHHHHHHHHCCCCEE
Confidence 345443 33333 45688999999987542 113343345 5566678986 45677888898886
No 89
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=23.73 E-value=2.4e+02 Score=25.96 Aligned_cols=96 Identities=10% Similarity=0.102 Sum_probs=58.8
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEec--CCccccccccc---cCCC
Q 022297 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP--VEEGKKQFDVV---NKGD 98 (299)
Q Consensus 24 ~M~IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~--~~~~~~~~~ei---~~g~ 98 (299)
.|-.+.-+|.-||-|+..||+.+.+.. +..+|-+ -++|....+...+.|+..|- +-+ .+++.++ ..+.
T Consensus 170 d~vlikdNHi~~~G~i~~Av~~ar~~~---~~~~IeV---Ev~tl~ea~eAl~aGaD~I~LDn~~-~~~l~~av~~~~~~ 242 (287)
T 3tqv_A 170 DAYLIKENHIRSAGGIAKAVTKAKKLD---SNKVVEV---EVTNLDELNQAIAAKADIVMLDNFS-GEDIDIAVSIARGK 242 (287)
T ss_dssp SSEEECTTTC----CHHHHHHHHHHHC---TTSCEEE---EESSHHHHHHHHHTTCSEEEEESCC-HHHHHHHHHHHTTT
T ss_pred cEEEEeHHHHHHhCCHHHHHHHHHhhC---CCCcEEE---EeCCHHHHHHHHHcCCCEEEEcCCC-HHHHHHHHHhhcCC
Confidence 354555788999999999999986642 2345555 57777665555556766553 211 1111111 1255
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCeEEeCC
Q 022297 99 VVVLPAFGAAVEEMVTLNNKNVQIVDTT 126 (299)
Q Consensus 99 ~VIIRAHGvs~~v~~~l~~kgl~VIDAT 126 (299)
..+.=|=|++++...++.+.|+.+|-..
T Consensus 243 v~ieaSGGIt~~~i~~~a~tGVD~IsvG 270 (287)
T 3tqv_A 243 VALEVSGNIDRNSIVAIAKTGVDFISVG 270 (287)
T ss_dssp CEEEEESSCCTTTHHHHHTTTCSEEECS
T ss_pred ceEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 6777888899999999989998887653
No 90
>3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan, TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter pylori}
Probab=23.62 E-value=1.8e+02 Score=26.25 Aligned_cols=90 Identities=9% Similarity=-0.039 Sum_probs=56.7
Q ss_pred cHHHHHHHHHHHHhhCC-CCceEEeeccc-cCHHHHHHHHhcCcEEecCCccc-------------------cccccccC
Q 022297 38 GVERAVQIAYEARKQFP-EEKIWITNEII-HNPTVNKRLEEMAVQNIPVEEGK-------------------KQFDVVNK 96 (299)
Q Consensus 38 GVkRAV~~a~~~~~~~~-~~~VytlG~LI-HN~~Vv~~L~~~GV~~v~~~~~~-------------------~~~~ei~~ 96 (299)
|-+..+....+++++++ ....|+.|..+ .||.+++++.+.|-.+-...-.. +.++++..
T Consensus 71 G~~~~~~rlL~lL~~~~v~aTfFv~g~~~~~~p~~v~~i~~~GhEIg~H~~~H~~~~~~s~~~~~~ei~~~~~~l~~~~G 150 (326)
T 3qbu_A 71 AGEVGIPRLLKLFKKYHLPATWFVPGHSIETFPEQMKMIVDAGHEVGAHGYSHENPIAMSTKQEEDVLLKSVELIKDLTG 150 (326)
T ss_dssp HHHTHHHHHHHHHHHTTCCCEEECCHHHHHHCHHHHHHHHTTTCEEEBCCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHS
T ss_pred CcHHhHHHHHHHHHHcCCCEEEEEEhHHhhhCHHHHHHHHHcCCEEEeCCCCCcChhhCCHHHHHHHHHHHHHHHHHHHC
Confidence 44455555555666542 23588888877 68999999999998665421100 01122211
Q ss_pred CCEEEEcCC--CCCHHHHHHHHhcCCeEEeCCCh
Q 022297 97 GDVVVLPAF--GAAVEEMVTLNNKNVQIVDTTCP 128 (299)
Q Consensus 97 g~~VIIRAH--Gvs~~v~~~l~~kgl~VIDATCP 128 (299)
-....+|+. ..++.+.+.|++.|+.. |.++.
T Consensus 151 ~~p~~fr~P~g~~~~~~~~~l~e~G~~y-dss~~ 183 (326)
T 3qbu_A 151 KAPTGYVAPWWEFSNITNELLLKHGFKY-DHSLM 183 (326)
T ss_dssp SCCCEECCGGGCCSSHHHHHHHTTTCCE-ECCCC
T ss_pred CCCcEEECCCCCCCHHHHHHHHHcCCEE-Eeecc
Confidence 223568876 67788999999999875 77764
No 91
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=23.38 E-value=3e+02 Score=25.69 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCeE-Ee-CCChhhHHHHHHHHHHhhCCC-eEEEEecC
Q 022297 109 VEEMVTLNNKNVQI-VD-TTCPWVSKVWTSVEKHKKGDY-TSIIHGKY 153 (299)
Q Consensus 109 ~~v~~~l~~kgl~V-ID-ATCP~V~kv~~~v~~~~~~GY-~IVIiGd~ 153 (299)
-++.++|++.|+.+ +| ..-+-.++-.+.|. +.|. .+||+|+.
T Consensus 383 ~~l~~~Lr~~Gi~ve~~~~~~~~l~~q~k~A~---~~g~~~~viiG~~ 427 (464)
T 4g84_A 383 LKLVSELWDAGIKAELLYKKNPKLLNQLQYCE---EAGIPLVAIIGEQ 427 (464)
T ss_dssp HHHHHHHHHTTCCEECCSCSSCCHHHHHHHHH---HHTCCEEEECCHH
T ss_pred HHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHH---HCCCCEEEEECch
Confidence 35678888899887 45 33444554444444 4455 46677754
No 92
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A
Probab=22.90 E-value=1.2e+02 Score=24.83 Aligned_cols=83 Identities=14% Similarity=0.101 Sum_probs=47.4
Q ss_pred CceEEeeccccCHHHHHHHHhcC--cEEecCCcccccccccc------CCCEEEEcCCCCCHHHHHHHHhcCCeEEeCCC
Q 022297 56 EKIWITNEIIHNPTVNKRLEEMA--VQNIPVEEGKKQFDVVN------KGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTC 127 (299)
Q Consensus 56 ~~VytlG~LIHN~~Vv~~L~~~G--V~~v~~~~~~~~~~ei~------~g~~VIIRAHGvs~~v~~~l~~kgl~VIDATC 127 (299)
..|+.+|+|++ +.+.+.|++.+ +..|....+.. ..++ -+..-|+=.||-+.... ..
T Consensus 42 d~ii~~GDl~~-~~~~~~l~~~~~~~~~v~GNhD~~--~~lp~~~~~~~~~~~i~l~Hg~~~~~~------------~~- 105 (192)
T 1z2w_A 42 QHILCTGNLCT-KESYDYLKTLAGDVHIVRGDFDEN--LNYPEQKVVTVGQFKIGLIHGHQVIPW------------GD- 105 (192)
T ss_dssp SEEEECSCCBS-HHHHHHHHHHCSEEEECCCTTCCC--TTSCSEEEEEETTEEEEEECSCCCCBT------------TC-
T ss_pred CEEEEcCCCCC-HHHHHHHHhcCCCEEEEcCCcCcc--ccCCcceEEEECCEEEEEECCCcCCCC------------CC-
Confidence 46999999996 78889999988 55565433211 1122 12233444687552110 00
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEEecCCCccee
Q 022297 128 PWVSKVWTSVEKHKKGDYTSIIHGKYSHEETV 159 (299)
Q Consensus 128 P~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~ 159 (299)
-..+... +.+.+..+++.|+-..|.+.
T Consensus 106 --~~~l~~~---~~~~~~d~vi~GHtH~~~~~ 132 (192)
T 1z2w_A 106 --MASLALL---QRQFDVDILISGHTHKFEAF 132 (192)
T ss_dssp --HHHHHHH---HHHHSSSEEECCSSCCCEEE
T ss_pred --HHHHHHH---HHhcCCCEEEECCcCcCccE
Confidence 1122222 22357899999998877654
No 93
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=22.87 E-value=1.2e+02 Score=24.46 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=17.6
Q ss_pred CceEEeeccccCH-------HHHHHHHhcC
Q 022297 56 EKIWITNEIIHNP-------TVNKRLEEMA 78 (299)
Q Consensus 56 ~~VytlG~LIHN~-------~Vv~~L~~~G 78 (299)
.-|+..|+|+++. .+.+.|++.+
T Consensus 34 D~vi~~GDl~~~~~~~~~~~~~~~~l~~~~ 63 (228)
T 1uf3_A 34 DAIALIGNLMPKAAKSRDYAAFFRILSEAH 63 (228)
T ss_dssp SEEEEESCSSCTTCCHHHHHHHHHHHGGGC
T ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 4699999999876 4667776655
No 94
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=22.79 E-value=92 Score=29.53 Aligned_cols=58 Identities=9% Similarity=0.057 Sum_probs=37.5
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHH------HHHhh--------------CCCeEEEEecCCC
Q 022297 97 GDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSV------EKHKK--------------GDYTSIIHGKYSH 155 (299)
Q Consensus 97 g~~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v------~~~~~--------------~GY~IVIiGd~~H 155 (299)
.|.+++|.+. ...+.+.++..++.||+|=|-.=.=.|.++ +.+.. +|-+|.++||-+|
T Consensus 122 ~D~IviR~~~-~~~~~~lA~~s~vPVINag~d~~HPtQaLaDl~TI~E~~G~~~~~~~~~~~~~~l~glkva~vGD~~n 199 (353)
T 3sds_A 122 VSCIVARVGP-HSDIANLAKHSSVPVINALCDTFHPLQAIADFLTIHESFASQSATHGTHPSSLGLEGLKIAWVGDANN 199 (353)
T ss_dssp CSEEEEECSS-HHHHHHHHHHCSSCEEEEECSSCCHHHHHHHHHHHHHHTC--------CTTCCSCTTCEEEEESCCCH
T ss_pred cCEEEEEeCC-hHHHHHHHhhCCCCEEECCCCCCCcHHHHHHHHHHHHHhCCCcccccccccccccCCCEEEEECCCch
Confidence 4678999543 334555566688999999553333333333 33333 7999999999986
No 95
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=22.66 E-value=1.7e+02 Score=26.97 Aligned_cols=59 Identities=12% Similarity=0.063 Sum_probs=38.6
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCeEEeC-CChhhHHHHHHH------HHHh-hCCCeEEEEecCCCc
Q 022297 97 GDVVVLPAFGAAVEEMVTLNNKNVQIVDT-TCPWVSKVWTSV------EKHK-KGDYTSIIHGKYSHE 156 (299)
Q Consensus 97 g~~VIIRAHGvs~~v~~~l~~kgl~VIDA-TCP~V~kv~~~v------~~~~-~~GY~IVIiGd~~HP 156 (299)
.|.+++|... ...+.+.++--++.||+| ++-.=.=.|.++ +.+- -+|-+|.++||-.|-
T Consensus 97 ~D~iviR~~~-~~~~~~lA~~~~vPVINag~g~~~HPtQ~LaDl~Ti~e~~g~l~glkva~vGD~~~~ 163 (306)
T 4ekn_B 97 ADIIVLRHPS-EGAARLASEYSQVPIINAGDGSNQHPTQTLLDLYTIMREIGRIDGIKIAFVGDLKYG 163 (306)
T ss_dssp CSEEEEECSS-TTHHHHHHHHCSSCEEESCSSSSCCHHHHHHHHHHHHHHHSCSTTCEEEEESCTTTC
T ss_pred CcEEEEEcCC-hHHHHHHHHhCCCCEEeCCCCCCcCcHHHHHHHHHHHHHhCCcCCCEEEEEcCCCCC
Confidence 5779999654 334555666689999999 553333333332 3332 379999999998774
No 96
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=22.59 E-value=3.2e+02 Score=22.43 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=22.4
Q ss_pred ccCCCE-EEEcCCCCCHHHHHHH---HhcCCeEEeCCC
Q 022297 94 VNKGDV-VVLPAFGAAVEEMVTL---NNKNVQIVDTTC 127 (299)
Q Consensus 94 i~~g~~-VIIRAHGvs~~v~~~l---~~kgl~VIDATC 127 (299)
+.++|. |+|+.-|-++++.+.+ +++|..+|=-|+
T Consensus 87 ~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~ 124 (200)
T 1vim_A 87 ITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTG 124 (200)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEES
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEEC
Confidence 456775 5799999999886554 445555554444
No 97
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=22.54 E-value=2.5e+02 Score=22.24 Aligned_cols=28 Identities=11% Similarity=0.042 Sum_probs=19.4
Q ss_pred EEEccccChHHHHHHHHHHHHHhhhccCccc
Q 022297 222 IANQTTMLKGETEEIGKLVEKTMMRKFGVEN 252 (299)
Q Consensus 222 Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~ 252 (299)
++.|+.... +++.+++++...+..||..
T Consensus 98 i~~~~g~~~---~~~~~~a~~~Gir~vgpnc 125 (140)
T 1iuk_A 98 VWLQSGIRH---PEFEKALKEAGIPVVADRC 125 (140)
T ss_dssp EEECTTCCC---HHHHHHHHHTTCCEEESCC
T ss_pred EEEcCCcCH---HHHHHHHHHcCCEEEcCCc
Confidence 566776654 5666668888888888754
No 98
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=21.83 E-value=3e+02 Score=21.75 Aligned_cols=29 Identities=21% Similarity=0.031 Sum_probs=20.1
Q ss_pred EEEEccccChHHHHHHHHHHHHHhhhccCccc
Q 022297 221 GIANQTTMLKGETEEIGKLVEKTMMRKFGVEN 252 (299)
Q Consensus 221 ~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~ 252 (299)
+++.||.-. .+++.+.+++...+..||..
T Consensus 96 ~i~~~~~~~---~~~l~~~a~~~Gi~~igpnc 124 (138)
T 1y81_A 96 KLWFQPGAE---SEEIRRFLEKAGVEYSFGRC 124 (138)
T ss_dssp EEEECTTSC---CHHHHHHHHHHTCEEECSCC
T ss_pred EEEEcCccH---HHHHHHHHHHCCCEEEcCCc
Confidence 366666432 47777778888888888754
No 99
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=21.27 E-value=2.3e+02 Score=20.18 Aligned_cols=94 Identities=16% Similarity=0.129 Sum_probs=53.4
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEecC-Cccccccccc-cCCCEEE
Q 022297 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV-EEGKKQFDVV-NKGDVVV 101 (299)
Q Consensus 24 ~M~IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~-~~~~~~~~ei-~~g~~VI 101 (299)
.|+|.+..- |+ .| ++ ++..+++. +...|+.+. .|+.-.+.+...|+..+.. ..+.+++.++ ..-|.||
T Consensus 5 ~~~v~I~G~-G~-iG--~~--~~~~l~~~-g~~~v~~~~---r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi 74 (118)
T 3ic5_A 5 RWNICVVGA-GK-IG--QM--IAALLKTS-SNYSVTVAD---HDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVI 74 (118)
T ss_dssp CEEEEEECC-SH-HH--HH--HHHHHHHC-SSEEEEEEE---SCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred cCeEEEECC-CH-HH--HH--HHHHHHhC-CCceEEEEe---CCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEE
Confidence 467777744 54 22 32 33444442 113465554 5888888888888876542 1111122222 2335554
Q ss_pred EcC-CCCCHHHHHHHHhcCCeEEeCCC
Q 022297 102 LPA-FGAAVEEMVTLNNKNVQIVDTTC 127 (299)
Q Consensus 102 IRA-HGvs~~v~~~l~~kgl~VIDATC 127 (299)
.-+ +.....+.+.+.+.|...+|.+-
T Consensus 75 ~~~~~~~~~~~~~~~~~~g~~~~~~~~ 101 (118)
T 3ic5_A 75 SAAPFFLTPIIAKAAKAAGAHYFDLTE 101 (118)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEECCCS
T ss_pred ECCCchhhHHHHHHHHHhCCCEEEecC
Confidence 433 22346778888899999999876
No 100
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=21.24 E-value=2.6e+02 Score=27.45 Aligned_cols=58 Identities=19% Similarity=0.098 Sum_probs=37.5
Q ss_pred EEEEeCCCCC----cccHHHHHHHHHHHHhh--------CCCCceEEeeccccC----HHHHHHHHhcCcEEec
Q 022297 26 KVKLAESYGF----CWGVERAVQIAYEARKQ--------FPEEKIWITNEIIHN----PTVNKRLEEMAVQNIP 83 (299)
Q Consensus 26 ~IilA~~~GF----C~GVkRAV~~a~~~~~~--------~~~~~VytlG~LIHN----~~Vv~~L~~~GV~~v~ 83 (299)
.|+.+..-|| ..|..+|++...+.+.. .....|-++|..-.+ .++..-|++.|+.++-
T Consensus 180 ~Vv~v~tpgf~Gs~~~G~~~a~~alv~~l~~~~~~~~~~~~~~~VNIig~~~~~~gD~~elkrlL~~~Gi~v~~ 253 (523)
T 3u7q_B 180 PVPFAHTPSFVGSHVTGWDNMFEGIARYFTLKSMDDKVVGSNKKINIVPGFETYLGNFRVIKRMLSEMGVGYSL 253 (523)
T ss_dssp CCCBCCCCTTSSCHHHHHHHHHHHHHHHHHGGGGGGCCTTTTCCEEEECCSCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEeeCCCCCCChhHHHHHHHHHHHHHhcccccccccCCCCCeEEEECCCCCChhHHHHHHHHHHHcCCeEEE
Confidence 3666777777 67888888876554322 113468889875221 3555667889998764
No 101
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=21.19 E-value=1.7e+02 Score=22.57 Aligned_cols=73 Identities=14% Similarity=0.190 Sum_probs=47.8
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCeE--EeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccC-CeEEEEcC
Q 022297 97 GDVVVLPAFGAAVEEMVTLNNKNVQI--VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA-GKYIIVKN 173 (299)
Q Consensus 97 g~~VIIRAHGvs~~v~~~l~~kgl~V--IDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~-~~~~vv~~ 173 (299)
+.++|+-+=-+...+.+.|.+.|..| ||-. ...++++.+.|+.+ +.||...|++---.|.. -+.+|+..
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~-------~~~~~~~~~~g~~~-i~gd~~~~~~l~~a~i~~ad~vi~~~ 79 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETS-------RTRVDELRERGVRA-VLGNAANEEIMQLAHLECAKWLILTI 79 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEESC-------HHHHHHHHHTTCEE-EESCTTSHHHHHHTTGGGCSEEEECC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECC-------HHHHHHHHHcCCCE-EECCCCCHHHHHhcCcccCCEEEEEC
Confidence 45678877557888999999988765 6764 23455566688874 78999999875332322 23555544
Q ss_pred hhhH
Q 022297 174 MKEA 177 (299)
Q Consensus 174 ~~e~ 177 (299)
..+.
T Consensus 80 ~~~~ 83 (140)
T 3fwz_A 80 PNGY 83 (140)
T ss_dssp SCHH
T ss_pred CChH
Confidence 4443
No 102
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=21.18 E-value=3.2e+02 Score=21.89 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=16.0
Q ss_pred ccCCCE-EEEcCCCCCHHHHHHH
Q 022297 94 VNKGDV-VVLPAFGAAVEEMVTL 115 (299)
Q Consensus 94 i~~g~~-VIIRAHGvs~~v~~~l 115 (299)
+.++|. |+|+.-|-++++.+.+
T Consensus 114 ~~~~d~vI~iS~SG~t~~~~~~~ 136 (198)
T 2xbl_A 114 GNEGDVLIGYSTSGKSPNILAAF 136 (198)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHH
Confidence 456776 4688889998887655
No 103
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=21.10 E-value=39 Score=27.25 Aligned_cols=76 Identities=24% Similarity=0.439 Sum_probs=46.8
Q ss_pred CCccccchHHHHHHhc-CceeeeeceEEEEeCCCCC-cccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcC
Q 022297 1 MNQEYTSDIIKKLKEN-GFEYTWGNVKVKLAESYGF-CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMA 78 (299)
Q Consensus 1 ~~~~~~s~~~~~~~~~-~~~~~~~~M~IilA~~~GF-C~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~G 78 (299)
|+++-++.|++..+.. |.++.||... +.|| |.|.-+.+ ++.. . + |.-|..-....+.|
T Consensus 1 m~~~~r~~i~~~A~~~lG~pY~~Gg~~-----~~g~DCSGlv~~~---~~~~--~-G---------i~lpr~s~~q~~~g 60 (136)
T 2jyx_A 1 MNVDVKSRIMDQYADWKGVRYRLGGST-----KKGIDCSGFVQRT---FREQ--F-G---------LELPRSTYEQQEMG 60 (136)
T ss_dssp CCCCHHHHHHHHHHHHSSCCBCTTCEE-----TTEECHHHHHHHH---HHHH--T-C---------CCCCSSHHHHGGGS
T ss_pred CCHHHHHHHHHHHHHhCCCCccCCCCC-----CCCeEHHHHHHHH---HHHh--c-C---------CCCCCCHHHHHhcC
Confidence 6777888888776655 9999999875 6777 99976543 2211 1 1 11123334444555
Q ss_pred cEEecCCccccccccccCCCEEEEcC
Q 022297 79 VQNIPVEEGKKQFDVVNKGDVVVLPA 104 (299)
Q Consensus 79 V~~v~~~~~~~~~~ei~~g~~VIIRA 104 (299)
-.+ + .+++.+||.|+++.
T Consensus 61 ~~v-~-------~~~l~pGDLvff~~ 78 (136)
T 2jyx_A 61 KSV-S-------RSNLRTGDLVLFRA 78 (136)
T ss_dssp EEC-C-------TTTCCTTEEEEEEC
T ss_pred eEc-c-------hHhCCCCCEEEECC
Confidence 332 2 25677899888873
No 104
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=20.85 E-value=3.2e+02 Score=21.72 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=23.4
Q ss_pred ccCCCE-EEEcCCCCCHHHHHHH---HhcCCeEEeCCCh
Q 022297 94 VNKGDV-VVLPAFGAAVEEMVTL---NNKNVQIVDTTCP 128 (299)
Q Consensus 94 i~~g~~-VIIRAHGvs~~v~~~l---~~kgl~VIDATCP 128 (299)
+.++|. |+|+.-|-++++.+.+ +++|.++|=-||.
T Consensus 108 ~~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~ 146 (188)
T 1tk9_A 108 GNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGK 146 (188)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEG
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 456776 4688889999886554 5566666555554
No 105
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
Probab=20.73 E-value=2.9e+02 Score=25.84 Aligned_cols=61 Identities=15% Similarity=0.023 Sum_probs=32.2
Q ss_pred EEEEccccChHH-HHHHHHHHHHH-h-------hhccCccchhhhH---HhhcCCceEEEEEcCCCCCcchhHhhhhc
Q 022297 221 GIANQTTMLKGE-TEEIGKLVEKT-M-------MRKFGVENMQCIR---WLRKRSILSWLLVGGTRAIPHTFKRLQKT 286 (299)
Q Consensus 221 ~Iv~QTT~~~~~-~~~i~~~l~~~-~-------~~~~g~~~~~ei~---~l~~~~vd~~lvvG~~~s~~~~~~~~~~~ 286 (299)
.|++-+|...+. .+.+.+.+++. . .-.++|+...+-. .+. ..+ -+|+|+. ++..+++++.-
T Consensus 118 iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~~Pe~~~~G~~~~~~~--~~~-~iv~G~~--~~~~~~~~~~l 190 (436)
T 1mv8_A 118 TVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYD--FPP-MTVIGEL--DKQTGDLLEEI 190 (436)
T ss_dssp EEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCCCCCTTSHHHHHH--SCS-CEEEEES--SHHHHHHHHHH
T ss_pred EEEEeCCcCCCchHHHHHHHHHHhcCcccCCcEEEEECcccccccccchhcc--CCC-EEEEEcC--CHHHHHHHHHH
Confidence 456666777777 56666777664 2 1134565544332 121 112 3567774 45566666553
No 106
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Probab=20.68 E-value=1e+02 Score=27.72 Aligned_cols=67 Identities=7% Similarity=0.003 Sum_probs=44.9
Q ss_pred ccCCCEEEEcC-CCCCHHHHHHHHhcCCeEEeC---CChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeee
Q 022297 94 VNKGDVVVLPA-FGAAVEEMVTLNNKNVQIVDT---TCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVAT 161 (299)
Q Consensus 94 i~~g~~VIIRA-HGvs~~v~~~l~~kgl~VIDA---TCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi 161 (299)
.++-|.|++-+ +..-.+....+.+.|..|+|. ++|.+....+.++...+.| .++.+|...+|.+.-+
T Consensus 63 ~~~~DvViiatp~~~h~~~~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g-~~~~v~~~~~p~~~~~ 133 (304)
T 3bio_A 63 LESVDVALVCSPSREVERTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSG-AAAVIASGWDPGSDSV 133 (304)
T ss_dssp SSSCCEEEECSCHHHHHHHHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHT-CEEECSCBBTTBHHHH
T ss_pred CCCCCEEEECCCchhhHHHHHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCC-CEEEEeCCCCHHHHHH
Confidence 33446665543 455567777888999999997 4677777777776666666 4677887656665443
No 107
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=20.57 E-value=2.4e+02 Score=25.55 Aligned_cols=102 Identities=16% Similarity=0.176 Sum_probs=53.6
Q ss_pred eceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEecCCccccccccc-cCCCEEE
Q 022297 23 GNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVV 101 (299)
Q Consensus 23 ~~M~IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei-~~g~~VI 101 (299)
..|||++-. +|| |=+++ |+.+. +. ..|.+.+ -|+.-.+++++..-.+.-+..+.+.+.++ .+-| ||
T Consensus 15 ~~mkilvlG-aG~---vG~~~--~~~L~-~~--~~v~~~~---~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~D-vV 81 (365)
T 3abi_A 15 RHMKVLILG-AGN---IGRAI--AWDLK-DE--FDVYIGD---VNNENLEKVKEFATPLKVDASNFDKLVEVMKEFE-LV 81 (365)
T ss_dssp -CCEEEEEC-CSH---HHHHH--HHHHT-TT--SEEEEEE---SCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCS-EE
T ss_pred CccEEEEEC-CCH---HHHHH--HHHHh-cC--CCeEEEE---cCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCC-EE
Confidence 479988873 465 33433 33333 32 3455433 36666677765432221122222233333 3345 55
Q ss_pred EcCCC--CCHHHHHHHHhcCCeEEeCC--ChhhHHHHHHH
Q 022297 102 LPAFG--AAVEEMVTLNNKNVQIVDTT--CPWVSKVWTSV 137 (299)
Q Consensus 102 IRAHG--vs~~v~~~l~~kgl~VIDAT--CP~V~kv~~~v 137 (299)
|.+=| ..+.+.+.+.+.|..++|.| =|....++..+
T Consensus 82 i~~~p~~~~~~v~~~~~~~g~~yvD~s~~~~~~~~l~~~a 121 (365)
T 3abi_A 82 IGALPGFLGFKSIKAAIKSKVDMVDVSFMPENPLELRDEA 121 (365)
T ss_dssp EECCCGGGHHHHHHHHHHHTCEEEECCCCSSCGGGGHHHH
T ss_pred EEecCCcccchHHHHHHhcCcceEeeeccchhhhhhhhhh
Confidence 55533 23678889999999999976 23334444433
No 108
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=20.48 E-value=1.8e+02 Score=25.01 Aligned_cols=68 Identities=9% Similarity=0.245 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeE
Q 022297 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 147 (299)
Q Consensus 68 ~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~I 147 (299)
..+.+.|++.|+.++.-....+..+++.+-|.|+++= |-+....+.|++.|+ ....+++.++| .
T Consensus 51 ~~~~~al~~lG~~~~~v~~~~d~~~~l~~ad~I~lpG-G~~~~~~~~l~~~gl-------------~~~l~~~~~~G--~ 114 (229)
T 1fy2_A 51 DKTAEVLAPLGVNVTGIHRVADPLAAIEKAEIIIVGG-GNTFQLLKESRERGL-------------LAPMADRVKRG--A 114 (229)
T ss_dssp HHHHHHHGGGTCEEEETTSSSCHHHHHHHCSEEEECC-SCHHHHHHHHHHTTC-------------HHHHHHHHHTT--C
T ss_pred HHHHHHHHHCCCEEEEEeccccHHHHHhcCCEEEECC-CcHHHHHHHHHHCCh-------------HHHHHHHHHcC--C
Confidence 3467789999987643210001114455556799999 999999999999885 34445555677 4
Q ss_pred EEEe
Q 022297 148 IIHG 151 (299)
Q Consensus 148 VIiG 151 (299)
.++|
T Consensus 115 p~~G 118 (229)
T 1fy2_A 115 LYIG 118 (229)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5556
No 109
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=20.42 E-value=26 Score=27.62 Aligned_cols=21 Identities=33% Similarity=0.838 Sum_probs=16.7
Q ss_pred HHHHHHHhcCCeE-----------EeCCChhh
Q 022297 110 EEMVTLNNKNVQI-----------VDTTCPWV 130 (299)
Q Consensus 110 ~v~~~l~~kgl~V-----------IDATCP~V 130 (299)
...+.|++||++| ||-+||+=
T Consensus 14 ~lk~lLk~RgIkVkk~~L~~Ff~fi~~~cPWF 45 (94)
T 1bax_A 14 QLKQALKTRGVKVKYADLLKFFDFVKDTCPWF 45 (94)
T ss_pred HHHHHHHHcCeeecHHHHHHHHHHHHHhCCCc
Confidence 4567788888888 89999973
No 110
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=20.34 E-value=1.5e+02 Score=27.56 Aligned_cols=58 Identities=12% Similarity=0.088 Sum_probs=38.0
Q ss_pred CCEEEEcCCCCCHHHHHHHHhc-CCeEEeCCC-hhhHHHHHHH------HHHhh-CCCeEEEEecCCC
Q 022297 97 GDVVVLPAFGAAVEEMVTLNNK-NVQIVDTTC-PWVSKVWTSV------EKHKK-GDYTSIIHGKYSH 155 (299)
Q Consensus 97 g~~VIIRAHGvs~~v~~~l~~k-gl~VIDATC-P~V~kv~~~v------~~~~~-~GY~IVIiGd~~H 155 (299)
.|.+++|... ...+.+.++-- ++.||+|=+ ..-.=.|..+ +.+.. +|.+|.++||-.|
T Consensus 99 ~D~iviR~~~-~~~~~~la~~~~~vPVINag~G~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~~~ 165 (310)
T 3csu_A 99 VDAIVMRHPQ-EGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKY 165 (310)
T ss_dssp CSEEEEEESS-TTHHHHHHHHCTTCCEEEEEETTSCCHHHHHHHHHHHHHHHSCSSSCEEEEESCTTT
T ss_pred CCEEEEECCC-hhHHHHHHHhcCCCCEEcCccCCCCCchHHHHHHHHHHHHhCCcCCcEEEEECCCCC
Confidence 4689999543 33455555566 799999843 4444444433 33333 7999999999877
No 111
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=20.29 E-value=1.1e+02 Score=28.26 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=39.2
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCeEEeCCC-hhhHHHHHHH------HHHhh-CCCeEEEEecCCCc
Q 022297 97 GDVVVLPAFGAAVEEMVTLNNKNVQIVDTTC-PWVSKVWTSV------EKHKK-GDYTSIIHGKYSHE 156 (299)
Q Consensus 97 g~~VIIRAHGvs~~v~~~l~~kgl~VIDATC-P~V~kv~~~v------~~~~~-~GY~IVIiGd~~HP 156 (299)
.|.+++|... ...+.+.++--++.||+|=+ ..-.=.|..+ +.+.. +|.+|.++||-.|-
T Consensus 101 ~D~iviR~~~-~~~~~~la~~~~vPVINag~g~~~HPtQ~LaDl~Ti~e~~g~l~gl~va~vGD~~~~ 167 (308)
T 1ml4_A 101 CDVIVIRHPK-EGAARLAAEVAEVPVINAGDGSNQHPTQTLLDLYTIKKEFGRIDGLKIGLLGDLKYG 167 (308)
T ss_dssp CSEEEEEESS-TTHHHHHHHTCSSCEEEEEETTSCCHHHHHHHHHHHHHHSSCSSSEEEEEESCTTTC
T ss_pred CcEEEEecCC-hhHHHHHHHhCCCCEEeCccCCccCcHHHHHHHHHHHHHhCCCCCeEEEEeCCCCcC
Confidence 5689999543 44556666677899999844 4444444433 33333 68999999998873
No 112
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=20.11 E-value=93 Score=23.96 Aligned_cols=35 Identities=9% Similarity=0.082 Sum_probs=25.6
Q ss_pred CeEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCC
Q 022297 120 VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYS 154 (299)
Q Consensus 120 l~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~ 154 (299)
+-|+|++.+........+..+...+-.++++|++-
T Consensus 83 i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~ 117 (178)
T 2lkc_A 83 ILVVAADDGVMPQTVEAINHAKAANVPIIVAINKM 117 (178)
T ss_dssp EEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECc
Confidence 55688888777777777777766677788888664
No 113
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=20.09 E-value=1.6e+02 Score=27.24 Aligned_cols=60 Identities=18% Similarity=0.137 Sum_probs=38.5
Q ss_pred CEEEEcCCCCCHHHHHHHHhcCCeEEeC-CChhhHHHHHHH------HHHh-hCCCeEEEEecCCCcce
Q 022297 98 DVVVLPAFGAAVEEMVTLNNKNVQIVDT-TCPWVSKVWTSV------EKHK-KGDYTSIIHGKYSHEET 158 (299)
Q Consensus 98 ~~VIIRAHGvs~~v~~~l~~kgl~VIDA-TCP~V~kv~~~v------~~~~-~~GY~IVIiGd~~HPEV 158 (299)
|.+++|...- ..+.+.++.-++.||+| +|..=.=.|..+ +.+. -+|-+|.++||-.|--|
T Consensus 94 D~iviR~~~~-~~~~~la~~~~vPVINagdg~~~HPtQaLaDl~Ti~e~~g~l~glkva~vGD~~~~rv 161 (304)
T 3r7f_A 94 DVCVIRHSED-EYYEELVSQVNIPILNAGDGCGQHPTQSLLDLMTIYEEFNTFKGLTVSIHGDIKHSRV 161 (304)
T ss_dssp CEEEEECSST-TCHHHHHHHCSSCEEESCCTTSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCCTTCHH
T ss_pred CEEEEecCCh-hHHHHHHHhCCCCEEeCCCCCCcCcHHHHHHHHHHHHHhCCCCCCEEEEEcCCCCcch
Confidence 6789996542 23344455678999999 564433344333 2332 37999999999887533
No 114
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=20.06 E-value=3.4e+02 Score=21.65 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=22.9
Q ss_pred ccCCCE-EEEcCCCCCHHHHH---HHHhcCCeEEeCCCh
Q 022297 94 VNKGDV-VVLPAFGAAVEEMV---TLNNKNVQIVDTTCP 128 (299)
Q Consensus 94 i~~g~~-VIIRAHGvs~~v~~---~l~~kgl~VIDATCP 128 (299)
+.++|. |+|+.-|-++++.+ .++++|..+|=-|+.
T Consensus 77 ~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~ 115 (186)
T 1m3s_A 77 LAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTIN 115 (186)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 445675 56899999988754 445566666555553
No 115
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*
Probab=20.04 E-value=1.3e+02 Score=27.96 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=39.8
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEec
Q 022297 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (299)
Q Consensus 36 C~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~ 83 (299)
-.+|.+|++.+.++.+.. +.++-+.|++--+|.....|.++|+..+.
T Consensus 229 ~p~v~~ai~~vv~aar~a-G~~vgvcge~~~dp~~~~~l~~lG~~~~s 275 (324)
T 2xz9_A 229 HPAILRLVKMVIDAAHKE-GKFAAMCGEMAGDPLAAVILLGLGLDEFS 275 (324)
T ss_dssp CHHHHHHHHHHHHHHHHT-TCEEEECSGGGGCHHHHHHHHHHTCCEEE
T ss_pred CHHHHHHHHHHHHHHHHH-CCceeecCccCCCHHHHHHHHHCCCCEEE
Confidence 457999999998888765 56788889998899999999999998764
Done!