BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022298
(299 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225452620|ref|XP_002281501.1| PREDICTED: putative rRNA methyltransferase ylbH [Vitis vinifera]
gi|296087748|emb|CBI35004.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 227/322 (70%), Positives = 251/322 (77%), Gaps = 30/322 (9%)
Query: 4 VSSSPILSPSSGRLSSN---SSTNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKK 60
VSSS I+SP + +N SS +LPLFS F K ++K +++ S KS GL +E+KK
Sbjct: 3 VSSSAIVSPLLINIRTNLSSSSPDLPLFSI-FRKTTTRKP-SVVILSCKSEDGLANEEKK 60
Query: 61 ELLKRYGLDPDEFLSEPSPKT-RRRKE----GRGSKLVVSDEKSQEERTTHRLLQVLGGK 115
LL+RYG D +EF+SEPSPKT RRRKE G+G + VS E + RTTH+LLQVLGGK
Sbjct: 61 LLLERYGYDANEFVSEPSPKTTRRRKELQKTGKGKQ--VSPEDPKPPRTTHKLLQVLGGK 118
Query: 116 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS 175
ARRKKLLSPKGMDVRPMMEVVKGAAFDILQ AGGCPASLRPGRWLDLYSGTGSVGIEA+S
Sbjct: 119 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQVAGGCPASLRPGRWLDLYSGTGSVGIEALS 178
Query: 176 RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235
RGCSEVHFVEMDPWVVS+VL PNLEWTGFLDVS IHTVRVE FLERA QFVGKD FDY+
Sbjct: 179 RGCSEVHFVEMDPWVVSDVLRPNLEWTGFLDVSVIHTVRVENFLERAMQFVGKDQSFDYI 238
Query: 236 SVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDRRFGRTHL 277
SVTPPYT VDYE VVEYPLR DMLD+CGCLVKI DRRFGRTHL
Sbjct: 239 SVTPPYTEVDYEVLMGQISSSALVGEDTFIVVEYPLRIDMLDSCGCLVKIADRRFGRTHL 298
Query: 278 AIYGPDWAQKKRKSEKKIPIVT 299
AIYGP WAQK+RKSEK P+V
Sbjct: 299 AIYGPKWAQKRRKSEKSFPVVA 320
>gi|147800028|emb|CAN74970.1| hypothetical protein VITISV_001039 [Vitis vinifera]
Length = 408
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 227/322 (70%), Positives = 251/322 (77%), Gaps = 30/322 (9%)
Query: 4 VSSSPILSPSSGRLSSN---SSTNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKK 60
VSSS I+SP + +N SS +LPLFS F K ++K +++ S KS GL +E+KK
Sbjct: 3 VSSSAIVSPLLINIRTNLSSSSPDLPLFSI-FRKTTTRKP-SVVILSCKSEDGLANEEKK 60
Query: 61 ELLKRYGLDPDEFLSEPSPKT-RRRKE----GRGSKLVVSDEKSQEERTTHRLLQVLGGK 115
LL+RYG D +EF+SEPSPKT RRRKE G+G + VS E + RTTH+LLQVLGGK
Sbjct: 61 LLLERYGYDANEFVSEPSPKTTRRRKELQKTGKGKQ--VSPEDPKPPRTTHKLLQVLGGK 118
Query: 116 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS 175
ARRKKLLSPKGMDVRPMMEVVKGAAFDILQ AGGCPASLRPGRWLDLYSGTGSVGIEA+S
Sbjct: 119 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQVAGGCPASLRPGRWLDLYSGTGSVGIEALS 178
Query: 176 RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235
RGCSEVHFVEMDPWVVS+VL PNLEWTGFLDVS IHTVRVE FLERA QFVGKD FDY+
Sbjct: 179 RGCSEVHFVEMDPWVVSDVLRPNLEWTGFLDVSVIHTVRVENFLERAMQFVGKDQSFDYI 238
Query: 236 SVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDRRFGRTHL 277
SVTPPYT VDYE VVEYPLR DMLD+CGCLVKI DRRFGRTHL
Sbjct: 239 SVTPPYTEVDYEVLMGQISSSALVGEDTFIVVEYPLRIDMLDSCGCLVKIADRRFGRTHL 298
Query: 278 AIYGPDWAQKKRKSEKKIPIVT 299
AIYGP WAQK+RKSEK P+V
Sbjct: 299 AIYGPKWAQKRRKSEKSFPVVA 320
>gi|224060033|ref|XP_002300031.1| predicted protein [Populus trichocarpa]
gi|222847289|gb|EEE84836.1| predicted protein [Populus trichocarpa]
Length = 321
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/321 (68%), Positives = 251/321 (78%), Gaps = 35/321 (10%)
Query: 3 VVSSSPILSP-----SSGRLSSNSSTNLPLFSTSFTKPISQKRYPLIVFSYK-SGTGLTS 56
+SSSPI SP ++ SS+S NL LF+ +KP + + +++ SYK SG GLTS
Sbjct: 2 AISSSPIASPLGININTKLASSSSFPNLALFNLP-SKP-TNRISTIVLSSYKNSGNGLTS 59
Query: 57 EDKKELLKRYGLDPDEFLSEPSP-----KTRRRKE----GRGSKLVVSDEKSQEERTTHR 107
EDKK L ++YGLDP++F S+PS KT+RRKE GRG ++ D + + +RTTHR
Sbjct: 60 EDKKALFEKYGLDPNQFPSQPSSSSPSLKTKRRKEIQNPGRGKQVREEDGEDKPQRTTHR 119
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
LLQVLGGKA+RKKLLSPKGMDVRPMMEVVKG+AFDILQ+AGGCPASLRPGRWLDLYSGTG
Sbjct: 120 LLQVLGGKAKRKKLLSPKGMDVRPMMEVVKGSAFDILQAAGGCPASLRPGRWLDLYSGTG 179
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
SVGIEAISRGCSEVHFVEMDPWVVSNVL PNLE TGFLDVS IHTVRVE+FLERAEQFVG
Sbjct: 180 SVGIEAISRGCSEVHFVEMDPWVVSNVLQPNLECTGFLDVSVIHTVRVESFLERAEQFVG 239
Query: 228 KDGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKD 269
+D FD++SVTPPYT VDY VVEYPLRTDMLD+CGCLVKI D
Sbjct: 240 QDSAFDFISVTPPYTQVDYGILMDQISKSPIVGEDTFIVVEYPLRTDMLDSCGCLVKIND 299
Query: 270 RRFGRTHLAIYGPDWAQKKRK 290
RRFGRTHLAIYGP+WAQKKRK
Sbjct: 300 RRFGRTHLAIYGPEWAQKKRK 320
>gi|449461901|ref|XP_004148680.1| PREDICTED: putative rRNA methyltransferase YlbH-like [Cucumis
sativus]
Length = 315
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/284 (68%), Positives = 218/284 (76%), Gaps = 23/284 (8%)
Query: 22 STNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDEFLSEPSPKT 81
S N PL S +KP + +IV SYKSG +E KK+LL++YGLDP+EFLSEPS
Sbjct: 25 SLNSPL-SNICSKPSAHPSSSIIVCSYKSGNHTVTERKKKLLEQYGLDPNEFLSEPSTNR 83
Query: 82 RR--RKEGRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGA 139
RR RK G+G ++ D K Q R TH+LLQVLGG ARR KLLSPKG+DVRPMMEVVKGA
Sbjct: 84 RREMRKTGKGKQIFPEDPKPQ--RQTHKLLQVLGGSARRMKLLSPKGLDVRPMMEVVKGA 141
Query: 140 AFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
AFDILQ+AGGCPASLRPGRWLDLYSGTGSVGIEA+SRGCSEVHFVEMDPWVVS+VL PNL
Sbjct: 142 AFDILQAAGGCPASLRPGRWLDLYSGTGSVGIEAMSRGCSEVHFVEMDPWVVSDVLRPNL 201
Query: 200 EWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYE------------ 247
E TGF DVS IHT+RVE F+ERA+Q +G + PFDY+SVTPPYT VDY
Sbjct: 202 ESTGFFDVSVIHTIRVENFIERADQLIGTERPFDYISVTPPYTQVDYGVLMGQLSKSALV 261
Query: 248 ------VVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWA 285
VVEYPLRTDML++CGCL KI DRRFGRTHLAIYGP WA
Sbjct: 262 GEDTFIVVEYPLRTDMLESCGCLTKITDRRFGRTHLAIYGPKWA 305
>gi|449519687|ref|XP_004166866.1| PREDICTED: putative rRNA methyltransferase YlbH-like [Cucumis
sativus]
Length = 313
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/284 (68%), Positives = 218/284 (76%), Gaps = 23/284 (8%)
Query: 22 STNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDEFLSEPSPKT 81
S N PL S +KP + +IV SYKSG +E KK+LL++YGLDP+EFLSEPS
Sbjct: 25 SLNSPL-SNICSKPSAHPSSSIIVCSYKSGNHTVTERKKKLLEQYGLDPNEFLSEPSTNR 83
Query: 82 RR--RKEGRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGA 139
RR RK G+G ++ D K Q R TH+LLQVLGG ARR KLLSPKG+DVRPMMEVVKGA
Sbjct: 84 RREMRKTGKGKQIFPEDPKPQ--RQTHKLLQVLGGSARRMKLLSPKGLDVRPMMEVVKGA 141
Query: 140 AFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
AFDILQ+AGGCPASLRPGRWLDLYSGTGSVGIEA+SRGCSEVHFVEMDPWVVS+VL PNL
Sbjct: 142 AFDILQAAGGCPASLRPGRWLDLYSGTGSVGIEAMSRGCSEVHFVEMDPWVVSDVLRPNL 201
Query: 200 EWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYE------------ 247
E TGF DVS IHT+RVE F+ERA+Q +G + PFDY+SVTPPYT VDY
Sbjct: 202 ESTGFFDVSVIHTIRVENFIERADQLIGTERPFDYISVTPPYTQVDYGVLMGQLSKSALV 261
Query: 248 ------VVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWA 285
VVEYPLRTDML++CGCL KI DRRFGRTHLAIYGP WA
Sbjct: 262 GEDTFIVVEYPLRTDMLESCGCLTKITDRRFGRTHLAIYGPKWA 305
>gi|297818452|ref|XP_002877109.1| hypothetical protein ARALYDRAFT_905108 [Arabidopsis lyrata subsp.
lyrata]
gi|297322947|gb|EFH53368.1| hypothetical protein ARALYDRAFT_905108 [Arabidopsis lyrata subsp.
lyrata]
Length = 312
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 197/319 (61%), Positives = 223/319 (69%), Gaps = 35/319 (10%)
Query: 1 MSVVSSSPILSP----SSGRLSSNSSTNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTS 56
M+V+ SSPI+SP + +S +S + LF S I R ++ SGTGL S
Sbjct: 1 MAVLLSSPIVSPLGINKNLGVSYSSFPQIHLFKVSTPLRI---RKSVVSSRKNSGTGLAS 57
Query: 57 EDKKELLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEE------RTTHRLLQ 110
EDKK LL+RYG D ++ S K RR++E K+ + + EE RTTHRLLQ
Sbjct: 58 EDKKLLLERYGYDANDDFGSQSKKARRKEE----KMSGRNGQQAEEVVVVQPRTTHRLLQ 113
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
VL G A+RKKLLS KGMDVRPMMEVVKGAAF ILQ+AGGCP SLRPGRWLDLYSGTGSVG
Sbjct: 114 VLAGTAKRKKLLSLKGMDVRPMMEVVKGAAFGILQAAGGCPTSLRPGRWLDLYSGTGSVG 173
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
IEAISRGCSE HFVEMDPWVV+NVL PNLE TGF+D S IHT RVE FLERA++ VGKDG
Sbjct: 174 IEAISRGCSEAHFVEMDPWVVTNVLQPNLEHTGFVDTSVIHTARVENFLERADKLVGKDG 233
Query: 231 PFDYMSVTPPYTAVDYEV------------------VEYPLRTDMLDTCGCLVKIKDRRF 272
FDY+SVTPPY VDYEV VEYP RT MLD+CGCL K+ DRRF
Sbjct: 234 AFDYISVTPPYMEVDYEVLMDQIAKSPAIGENTFILVEYPSRTTMLDSCGCLEKMTDRRF 293
Query: 273 GRTHLAIYGPDWAQKKRKS 291
GRTHLAIYGP WAQK RKS
Sbjct: 294 GRTHLAIYGPKWAQKPRKS 312
>gi|22331389|ref|NP_189487.2| methyltransferase [Arabidopsis thaliana]
gi|9294581|dbj|BAB02862.1| unnamed protein product [Arabidopsis thaliana]
gi|18389226|gb|AAL67056.1| unknown protein [Arabidopsis thaliana]
gi|23296698|gb|AAN13150.1| unknown protein [Arabidopsis thaliana]
gi|332643927|gb|AEE77448.1| methyltransferase [Arabidopsis thaliana]
Length = 314
Score = 359 bits (922), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 184/264 (69%), Positives = 199/264 (75%), Gaps = 22/264 (8%)
Query: 49 KSGTGLTSEDKKELLKRYGLDPDEFLSEPSPKTRRRKE---GRGSKLVVSDEKSQEERTT 105
SGTGL SEDKK LL+RYG D ++ S K RR++E GR S+ V + RTT
Sbjct: 52 NSGTGLASEDKKLLLERYGYDANDDFGSQSKKARRKEEKMSGRNSQQVEE-VVVVQPRTT 110
Query: 106 HRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSG 165
HRLLQVL G A+RKKLLS KGMDVRPMMEVVKGAAF ILQ+AGGCP SLRPGRWLDLYSG
Sbjct: 111 HRLLQVLAGTAKRKKLLSLKGMDVRPMMEVVKGAAFGILQAAGGCPTSLRPGRWLDLYSG 170
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
TGSVGIEAISRGCSE HFVEMDPWVVSNVL PNLE TGF+D S IHT RVE FLERA++
Sbjct: 171 TGSVGIEAISRGCSEAHFVEMDPWVVSNVLQPNLEHTGFVDASVIHTARVENFLERADKL 230
Query: 226 VGKDGPFDYMSVTPPYTAVDYEV------------------VEYPLRTDMLDTCGCLVKI 267
VGKDG FDY+SVTPPY VDYEV VEYP RT MLD+CGCL K+
Sbjct: 231 VGKDGVFDYISVTPPYMEVDYEVLMDQIAKSPAIGENTFILVEYPSRTTMLDSCGCLEKM 290
Query: 268 KDRRFGRTHLAIYGPDWAQKKRKS 291
DRRFGRTHLAIYGP WAQK RKS
Sbjct: 291 TDRRFGRTHLAIYGPKWAQKPRKS 314
>gi|356550476|ref|XP_003543613.1| PREDICTED: putative rRNA methyltransferase ylbH-like [Glycine max]
Length = 311
Score = 353 bits (905), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 200/308 (64%), Positives = 223/308 (72%), Gaps = 26/308 (8%)
Query: 9 ILSPSSGRLSSNSSTNL--PLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRY 66
+L P+ L N+ T+ P F S PL V KSG GL SEDKK LL++Y
Sbjct: 4 LLPPTFSPLLLNTKTDFGSPPFPLLTLSSSSPTSSPLFVSYTKSGNGLASEDKKILLEKY 63
Query: 67 G--LDPDEFLSEPSPKTRRRKEG---RGSKLVVSD-EKSQEERTTHRLLQVLGGKARRKK 120
G +D DE+ S+ S K++RRKE RG K V E + R TH+LLQVLGG ARR K
Sbjct: 64 GYDIDADEYFSQSSSKSKRRKEQPRRRGGKQVQDPPEDPKPPRVTHKLLQVLGGTARRVK 123
Query: 121 LLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSE 180
LLSPKGMDVRPMMEVVKGAAFDILQ+AGGCPA+LRPGRWLDLYSGTGSVGIEA+SRGCS+
Sbjct: 124 LLSPKGMDVRPMMEVVKGAAFDILQAAGGCPAALRPGRWLDLYSGTGSVGIEALSRGCSQ 183
Query: 181 VHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP 240
VHFVEMDPWVVS+VL PNLE TGFLD S IHTVRVE F ERAEQFVG GPFDY+SVTPP
Sbjct: 184 VHFVEMDPWVVSDVLRPNLEETGFLDASVIHTVRVEKFFERAEQFVGNSGPFDYISVTPP 243
Query: 241 YTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGP 282
YT VDY VVEYPL+TDMLD+CG LVKI DRRFGRT LAIYGP
Sbjct: 244 YTQVDYGVLMRQISESSLIGENTFIVVEYPLKTDMLDSCGSLVKITDRRFGRTLLAIYGP 303
Query: 283 DWAQKKRK 290
W+QKKR+
Sbjct: 304 TWSQKKRR 311
>gi|255552778|ref|XP_002517432.1| conserved hypothetical protein [Ricinus communis]
gi|223543443|gb|EEF44974.1| conserved hypothetical protein [Ricinus communis]
Length = 268
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 168/231 (72%), Positives = 188/231 (81%), Gaps = 22/231 (9%)
Query: 80 KTRRRKEGRGS---KLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVV 136
+++R+KEG+ + K VV++E ++ RTTHRLLQV GGKA+RKKLLSP GMDVRPMMEVV
Sbjct: 18 RSKRKKEGKNAGKGKQVVAEE-AKPPRTTHRLLQVFGGKAKRKKLLSPMGMDVRPMMEVV 76
Query: 137 KGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLI 196
KG AFDILQ+AGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL
Sbjct: 77 KGCAFDILQAAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLQ 136
Query: 197 PNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYE--------- 247
PNLE TGFLDVS +HTVRVE FLERAEQF+G + FD++SVTPPY V+Y
Sbjct: 137 PNLESTGFLDVSVVHTVRVENFLERAEQFIGSNRTFDFISVTPPYMEVNYGTLMDQVSKS 196
Query: 248 ---------VVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWAQKKR 289
VVEYPLRT+MLD CG L+KI DRRFGRTHLAIYGP WAQKKR
Sbjct: 197 ALVGEDTFIVVEYPLRTEMLDACGSLIKIADRRFGRTHLAIYGPKWAQKKR 247
>gi|388508868|gb|AFK42500.1| unknown [Medicago truncatula]
Length = 325
Score = 333 bits (855), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 176/267 (65%), Positives = 199/267 (74%), Gaps = 25/267 (9%)
Query: 51 GTGLTSEDKKELLKR--YGLDPDEFLSEPSPKTR----RRKEGRGSKLVVSDE-KSQEER 103
G GL SE+KK LL+R Y +D D++ + S +++ RG K V + + R
Sbjct: 54 GNGLASEEKKILLERDGYDVDADDYFPQSSSPKSKRKKEQQKTRGGKQVQDPPVEPKPPR 113
Query: 104 TTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLY 163
TTH+LLQV+GG ARR KLLSPK MDVRPMMEVVKGAAFDILQ+AGG PASLRPGRWLDLY
Sbjct: 114 TTHKLLQVIGGTARRTKLLSPKSMDVRPMMEVVKGAAFDILQAAGGSPASLRPGRWLDLY 173
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
SGTGSVGIEA+SRGCSEVHFVEMDPWVVS+VL PNLE TGF+D S IHTVRVE F ERAE
Sbjct: 174 SGTGSVGIEALSRGCSEVHFVEMDPWVVSDVLRPNLEVTGFIDDSVIHTVRVEKFFERAE 233
Query: 224 QFVGKDGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLV 265
QFVG + FDY+SVTPPY VDY VVEYPL+TDML++CG LV
Sbjct: 234 QFVGNNDTFDYISVTPPYAEVDYVVLMRVISESPFVGDDTFIVVEYPLKTDMLESCGPLV 293
Query: 266 KIKDRRFGRTHLAIYGPDWAQKKRKSE 292
KI DRRFGRT LAIYGP WAQKKRKS+
Sbjct: 294 KITDRRFGRTLLAIYGPTWAQKKRKSK 320
>gi|357496275|ref|XP_003618426.1| hypothetical protein MTR_6g009400 [Medicago truncatula]
gi|355493441|gb|AES74644.1| hypothetical protein MTR_6g009400 [Medicago truncatula]
Length = 325
Score = 333 bits (855), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 176/267 (65%), Positives = 199/267 (74%), Gaps = 25/267 (9%)
Query: 51 GTGLTSEDKKELLKRYG--LDPDEFLSEPSPKTR----RRKEGRGSKLVVSDE-KSQEER 103
G GL SE+KK LL+RYG +D D++ + S +++ RG K V + + R
Sbjct: 54 GNGLASEEKKILLERYGYDVDADDYFPQSSSPKSKRKKEQQKTRGGKQVQDPPVEPKPPR 113
Query: 104 TTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLY 163
TTH+LLQV+GG ARR KLLSPK MDVRPMMEVVKGAAFDILQ+AGG PASLRPGRWLDLY
Sbjct: 114 TTHKLLQVIGGTARRTKLLSPKSMDVRPMMEVVKGAAFDILQAAGGSPASLRPGRWLDLY 173
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
SGTGSVGIEA+SRGCSEVHFVEMDPWVVS+VL PNLE TGF+D S IHTVRVE F ERAE
Sbjct: 174 SGTGSVGIEALSRGCSEVHFVEMDPWVVSDVLRPNLEVTGFIDDSVIHTVRVEKFFERAE 233
Query: 224 QFVGKDGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLV 265
QFVG + FDY+SVTPPY VDY VVEYP +TDML++CG LV
Sbjct: 234 QFVGNNDTFDYISVTPPYAEVDYVVLMRLISESPFVGDDTFIVVEYPSKTDMLESCGPLV 293
Query: 266 KIKDRRFGRTHLAIYGPDWAQKKRKSE 292
KI DRRFGRT LAIYGP WAQKKRKS+
Sbjct: 294 KITDRRFGRTLLAIYGPTWAQKKRKSK 320
>gi|226529235|ref|NP_001144192.1| uncharacterized protein LOC100277052 [Zea mays]
gi|195638230|gb|ACG38583.1| hypothetical protein [Zea mays]
Length = 318
Score = 306 bits (785), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 156/262 (59%), Positives = 193/262 (73%), Gaps = 29/262 (11%)
Query: 58 DKKELLKRYGLDPDEFL--SEPSPKTRRR------KEGRG---SKLVVSDEKSQEERTTH 106
+++ L+RYGL+P++F +E +P+ R+ + GRG ++ V+ K +E R TH
Sbjct: 56 ERRRFLERYGLNPNDFEEDAEDNPREERKDRRRRRQSGRGEQTAEAAVTPAKVEEPRETH 115
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++LQVLGGK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGT
Sbjct: 116 KMLQVLGGKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGSPASLRPGRWLDLYSGT 175
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
GSVGIEA+SRGCSE HFVEMDPWV+S VL PNLE TGFLDVS IH +RVE FL AE+
Sbjct: 176 GSVGIEAMSRGCSEAHFVEMDPWVISEVLKPNLECTGFLDVSHIHMLRVENFLANAEKSQ 235
Query: 227 GKDGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIK 268
G+ FDY+SVTPPY V+Y +VEYPL+TDM ++CG LVK+
Sbjct: 236 GRYPSFDYISVTPPYLEVNYSTLLGQLARSPLVGKDCFILVEYPLKTDMAESCGNLVKVA 295
Query: 269 DRRFGRTHLAIYGPDWAQKKRK 290
DRRFGRT+L IYGP W++KK+K
Sbjct: 296 DRRFGRTNLLIYGPTWSEKKKK 317
>gi|357116543|ref|XP_003560040.1| PREDICTED: putative rRNA methyltransferase ylbH-like [Brachypodium
distachyon]
Length = 312
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 158/260 (60%), Positives = 193/260 (74%), Gaps = 27/260 (10%)
Query: 58 DKKELLKRYGLDPDEFL--SEPSPKTRRRKEGRG-------SKLVVSDEKSQEERTTHRL 108
+++ L+RYGL+PD++ +EP P+ RR+E R + V+ K+ E R TH++
Sbjct: 50 ERRRFLERYGLNPDDYEEDAEPDPREERRRERRMRRSGRGEDEAAVAPVKAVERRETHKM 109
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
LQVLGGK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGTGS
Sbjct: 110 LQVLGGKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGSPASLRPGRWLDLYSGTGS 169
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIEA+SRGCSEVHFVEMDPWVVS VL PNLE TGFLD S IH +RVETFL+ AE+ G+
Sbjct: 170 VGIEAMSRGCSEVHFVEMDPWVVSEVLKPNLECTGFLDASDIHMLRVETFLDNAEKSKGR 229
Query: 229 DGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDR 270
FDY+SVTPPY V+Y +VEYPL+TDM ++CG L+KI DR
Sbjct: 230 YPSFDYISVTPPYVEVNYSTLLDQLASSPLVGEDCFILVEYPLKTDMAESCGKLIKIADR 289
Query: 271 RFGRTHLAIYGPDWAQKKRK 290
+FGRT+L IYGP W++KK+K
Sbjct: 290 KFGRTNLLIYGPTWSEKKKK 309
>gi|242033039|ref|XP_002463914.1| hypothetical protein SORBIDRAFT_01g008850 [Sorghum bicolor]
gi|241917768|gb|EER90912.1| hypothetical protein SORBIDRAFT_01g008850 [Sorghum bicolor]
Length = 320
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 152/260 (58%), Positives = 186/260 (71%), Gaps = 29/260 (11%)
Query: 62 LLKRYGLDPDEFLSEPS-----------PKTRRRKEGRGSKLVVSDEKSQEERTTHRLLQ 110
L+RYGL+PD+F + + + + + ++ VV+ K+ E R TH++LQ
Sbjct: 59 FLERYGLNPDDFEEDAGEDPRQEKRDRRRRRQSGRGEQTAEAVVTPSKAAEPRETHKMLQ 118
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
VLGGK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGTGSVG
Sbjct: 119 VLGGKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGSPASLRPGRWLDLYSGTGSVG 178
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
IEA+SRGCSE HFVEMDPWV+S VL PNLE TGF+DVS IH +RVE FL AE+ GK
Sbjct: 179 IEAMSRGCSEAHFVEMDPWVISEVLKPNLECTGFIDVSHIHMLRVEKFLANAEKSQGKYP 238
Query: 231 PFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDRRF 272
FDY+SVTPPY V+Y +VEYPL+TDM ++CG L+KI DRRF
Sbjct: 239 SFDYISVTPPYLEVNYSTLLAQLARSPLVGKDCFILVEYPLKTDMAESCGNLIKIADRRF 298
Query: 273 GRTHLAIYGPDWAQKKRKSE 292
GRT+L IYGP W++KKR+ +
Sbjct: 299 GRTNLLIYGPTWSEKKRRRD 318
>gi|222625753|gb|EEE59885.1| hypothetical protein OsJ_12486 [Oryza sativa Japonica Group]
Length = 313
Score = 296 bits (758), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 152/256 (59%), Positives = 181/256 (70%), Gaps = 26/256 (10%)
Query: 62 LLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEE--------RTTHRLLQVLG 113
L+RYGL+PD+F + + R + ++++ R TH++LQVLG
Sbjct: 58 FLERYGLNPDDFEDDAEAEPREERRRDRRNRRSGRGEAEDAPAKAAAEPRETHKMLQVLG 117
Query: 114 GKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEA 173
GK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGTGSVGIEA
Sbjct: 118 GKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGFPASLRPGRWLDLYSGTGSVGIEA 177
Query: 174 ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233
+SRGCSE HFVEMDPWVVS VL PNLE TGFLDVS IH +RVE FL AE+ GK FD
Sbjct: 178 MSRGCSEAHFVEMDPWVVSEVLKPNLECTGFLDVSHIHMIRVENFLANAEKSSGKYPSFD 237
Query: 234 YMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDRRFGRT 275
Y+SVTPPY V+Y +VEYPL+TDM ++CG L+K+ DRRFGRT
Sbjct: 238 YISVTPPYLEVNYSTLLDQLARSPLVGEDCFILVEYPLKTDMAESCGSLIKVADRRFGRT 297
Query: 276 HLAIYGPDWAQKKRKS 291
+L IYGP WA+KKR+S
Sbjct: 298 NLLIYGPTWAEKKRRS 313
>gi|115455185|ref|NP_001051193.1| Os03g0736400 [Oryza sativa Japonica Group]
gi|108710953|gb|ABF98748.1| expressed protein [Oryza sativa Japonica Group]
gi|108710954|gb|ABF98749.1| expressed protein [Oryza sativa Japonica Group]
gi|113549664|dbj|BAF13107.1| Os03g0736400 [Oryza sativa Japonica Group]
gi|215697269|dbj|BAG91263.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215740723|dbj|BAG97379.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218193713|gb|EEC76140.1| hypothetical protein OsI_13427 [Oryza sativa Indica Group]
Length = 311
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 152/256 (59%), Positives = 181/256 (70%), Gaps = 26/256 (10%)
Query: 62 LLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEE--------RTTHRLLQVLG 113
L+RYGL+PD+F + + R + ++++ R TH++LQVLG
Sbjct: 56 FLERYGLNPDDFEDDAEAEPREERRRDRRNRRSGRGEAEDAPAKAAAEPRETHKMLQVLG 115
Query: 114 GKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEA 173
GK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGTGSVGIEA
Sbjct: 116 GKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGFPASLRPGRWLDLYSGTGSVGIEA 175
Query: 174 ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233
+SRGCSE HFVEMDPWVVS VL PNLE TGFLDVS IH +RVE FL AE+ GK FD
Sbjct: 176 MSRGCSEAHFVEMDPWVVSEVLKPNLECTGFLDVSHIHMIRVENFLANAEKSSGKYPSFD 235
Query: 234 YMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDRRFGRT 275
Y+SVTPPY V+Y +VEYPL+TDM ++CG L+K+ DRRFGRT
Sbjct: 236 YISVTPPYLEVNYSTLLDQLARSPLVGEDCFILVEYPLKTDMAESCGSLIKVADRRFGRT 295
Query: 276 HLAIYGPDWAQKKRKS 291
+L IYGP WA+KKR+S
Sbjct: 296 NLLIYGPTWAEKKRRS 311
>gi|257209025|emb|CBB36503.1| Arabidopsis protein targeted to chloroplast protein At3g28460
[Saccharum hybrid cultivar R570]
Length = 327
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 152/256 (59%), Positives = 180/256 (70%), Gaps = 29/256 (11%)
Query: 62 LLKRYGLDPDEFLSEPSPKTRRR--------KEGRG---SKLVVSDEKSQEERTTHRLLQ 110
L+RYGL+PD+F + R + GRG ++ V+ K+ E R TH++LQ
Sbjct: 59 FLERYGLNPDDFEEDAEEDPREERRDRRRRRQSGRGEQTAEAAVTPSKAAEPRETHKMLQ 118
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
VLGGK RR+KLLSP+ +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGTGSVG
Sbjct: 119 VLGGKVRRRKLLSPRDRNVRPMMEVVRGAAFDILQSAGGSPASLRPGRWLDLYSGTGSVG 178
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
IEA+SRGCSE HFVEMDPWV+S VL PNLE TGF+DVS IH +RVE FL AE+ GK
Sbjct: 179 IEAMSRGCSEAHFVEMDPWVISEVLKPNLECTGFIDVSHIHMLRVEKFLANAEKSQGKYP 238
Query: 231 PFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDRRF 272
FDY+SVTPPY V+Y +VEYPL+TDM ++CG L+KI DRRF
Sbjct: 239 SFDYISVTPPYLEVNYSTLLAQLARSPLVGKDCFILVEYPLKTDMAESCGNLIKIADRRF 298
Query: 273 GRTHLAIYGPDWAQKK 288
GRT+L IYGP W K
Sbjct: 299 GRTNLLIYGPTWCNDK 314
>gi|326511379|dbj|BAJ87703.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326534084|dbj|BAJ89392.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326534138|dbj|BAJ89419.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 314
Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 148/255 (58%), Positives = 184/255 (72%), Gaps = 27/255 (10%)
Query: 62 LLKRYGLDPDEFL--SEPSPKTRRRKEGRG-------SKLVVSDEKSQEERTTHRLLQVL 112
L+RYGL+PD+F +EP P+ RR+E R + V+ + E R TH++LQ+L
Sbjct: 55 FLERYGLNPDDFEEDAEPDPREERRRERRMRRSGRGEEEAAVAPARPVERRETHKMLQIL 114
Query: 113 GGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIE 172
GK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASL+PG WLDLYSGTGSVGIE
Sbjct: 115 AGKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGSPASLKPGLWLDLYSGTGSVGIE 174
Query: 173 AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232
A+SRGCSE HFVE+DPWV+S VL PNL+ TGFLD S IH +RVE FL+ AE+ G+ F
Sbjct: 175 AMSRGCSEAHFVELDPWVISEVLKPNLDCTGFLDTSHIHMLRVENFLDNAEKSKGRYPSF 234
Query: 233 DYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDRRFGR 274
DY+SVTPPY V+Y +VEYPL+TDM ++CG L+KI DR+FGR
Sbjct: 235 DYISVTPPYVEVNYSTLLDQLARSPLVGEDCFILVEYPLKTDMPESCGKLIKIADRKFGR 294
Query: 275 THLAIYGPDWAQKKR 289
T+L IYGP W++KK+
Sbjct: 295 TNLLIYGPTWSEKKK 309
>gi|29788862|gb|AAP03408.1| hypothetical protein [Oryza sativa Japonica Group]
gi|37999998|gb|AAR07085.1| unknown protein [Oryza sativa Japonica Group]
Length = 318
Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 152/264 (57%), Positives = 181/264 (68%), Gaps = 35/264 (13%)
Query: 62 LLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEE--------RTTHRLLQVLG 113
L+RYGL+PD+F + + R + ++++ R TH++LQVLG
Sbjct: 56 FLERYGLNPDDFEDDAEAEPREERRRDRRNRRSGRGEAEDAPAKAAAEPRETHKMLQVLG 115
Query: 114 GKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEA 173
GK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGTGSVGIEA
Sbjct: 116 GKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGFPASLRPGRWLDLYSGTGSVGIEA 175
Query: 174 ISRGCSEV--------HFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+SRGCSEV HFVEMDPWVVS VL PNLE TGFLDVS IH +RVE FL AE+
Sbjct: 176 MSRGCSEVFPRTEVKAHFVEMDPWVVSEVLKPNLECTGFLDVSHIHMIRVENFLANAEK- 234
Query: 226 VGKDGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKI 267
K FDY+SVTPPY V+Y +VEYPL+TDM ++CG L+K+
Sbjct: 235 SSKYPSFDYISVTPPYLEVNYSTLLDQLARSPLVGEDCFILVEYPLKTDMAESCGSLIKV 294
Query: 268 KDRRFGRTHLAIYGPDWAQKKRKS 291
DRRFGRT+L IYGP WA+KKR+S
Sbjct: 295 ADRRFGRTNLLIYGPTWAEKKRRS 318
>gi|413933138|gb|AFW67689.1| hypothetical protein ZEAMMB73_980003, partial [Zea mays]
Length = 255
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 126/200 (63%), Positives = 154/200 (77%), Gaps = 11/200 (5%)
Query: 58 DKKELLKRYGLDPDEFL--SEPSPKTRRR------KEGRG---SKLVVSDEKSQEERTTH 106
+++ L+ YGL+P++F +E +P+ R+ + GRG ++ V+ K +E R TH
Sbjct: 56 ERRRFLESYGLNPNDFEEDAEENPREERKDRRRRRQSGRGEQTAEAAVTPAKVEEPRETH 115
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++LQVLGGK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGT
Sbjct: 116 KMLQVLGGKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGSPASLRPGRWLDLYSGT 175
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
GSVGIEA+SRGCSE HFVEMDPWV+S VL PNLE TGF+DVS IH +RVE FL AE+
Sbjct: 176 GSVGIEAMSRGCSEAHFVEMDPWVISEVLKPNLECTGFIDVSQIHMLRVEKFLANAEKSH 235
Query: 227 GKDGPFDYMSVTPPYTAVDY 246
GK FDY+SVTPPY V+Y
Sbjct: 236 GKYPSFDYISVTPPYLEVNY 255
>gi|168036734|ref|XP_001770861.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677920|gb|EDQ64385.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 245
Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 116/206 (56%), Positives = 144/206 (69%), Gaps = 22/206 (10%)
Query: 103 RTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDL 162
R TH+LL+V+ GK +KL SP ++VRPMME+V+GA F+ILQ+ GG A L PGRWLDL
Sbjct: 38 RLTHKLLRVMAGKVGGRKLASPADLNVRPMMEIVRGAVFNILQALGGGAAQLPPGRWLDL 97
Query: 163 YSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER- 221
YSGTGSVGIEA+SRGC +FVEMDPWV+ VL PNL TGF D + +HT VET L++
Sbjct: 98 YSGTGSVGIEALSRGCEMAYFVEMDPWVIDEVLNPNLAVTGFQDQAVVHTSPVETLLDQV 157
Query: 222 AEQFVG-KDGPFDYMSVTPPYTAVDYE------------------VVEYPLRT--DMLDT 260
AE G G FDY+SVTPPY AV + VVEYP+++ +M +T
Sbjct: 158 AEHGAGLLGGQFDYISVTPPYEAVVFSKLMQQISDSPLVKEDTCIVVEYPIKSKREMPET 217
Query: 261 CGCLVKIKDRRFGRTHLAIYGPDWAQ 286
CG LVKI+DRR+GRTH+AIYGP WA+
Sbjct: 218 CGPLVKIRDRRYGRTHVAIYGPAWAK 243
>gi|302790748|ref|XP_002977141.1| hypothetical protein SELMODRAFT_57071 [Selaginella moellendorffii]
gi|300155117|gb|EFJ21750.1| hypothetical protein SELMODRAFT_57071 [Selaginella moellendorffii]
Length = 207
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 112/202 (55%), Positives = 139/202 (68%), Gaps = 21/202 (10%)
Query: 101 EERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWL 160
E RT H+LL+V+GGK KKLLSP VRPMMEVV+GA F++LQ+ GG L PG+WL
Sbjct: 7 EPRTVHKLLRVMGGKNNGKKLLSPNDSSVRPMMEVVRGAVFNMLQARGGYTGGLPPGKWL 66
Query: 161 DLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220
DLYSGTGSVGIEA+SRGC HF+EMDPWV+S VL PNLE T + + S +H ++VET+LE
Sbjct: 67 DLYSGTGSVGIEALSRGCLAAHFIEMDPWVISKVLKPNLEATNYTEQSVVHMLKVETYLE 126
Query: 221 RAEQFVGKDGPFDYMSVTPPYTAVDYE------------------VVEYPLRT--DMLDT 260
+ + K FDY+SVTPPY AV Y +VEYPL++ +M +
Sbjct: 127 K-QATNPKAEVFDYISVTPPYEAVHYPTLMEQLSTSPLVGDYTYVIVEYPLKSKQEMPEA 185
Query: 261 CGCLVKIKDRRFGRTHLAIYGP 282
CG L KI DRR+GRTHLA+YGP
Sbjct: 186 CGPLAKIVDRRYGRTHLAVYGP 207
>gi|302820944|ref|XP_002992137.1| hypothetical protein SELMODRAFT_134814 [Selaginella moellendorffii]
gi|300140063|gb|EFJ06792.1| hypothetical protein SELMODRAFT_134814 [Selaginella moellendorffii]
Length = 225
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 111/203 (54%), Positives = 140/203 (68%), Gaps = 21/203 (10%)
Query: 101 EERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWL 160
E RT H+LL+V+GGK KKLLSP VRPMMEVV+GA F++LQ+ GG L PG+WL
Sbjct: 23 EPRTVHKLLRVMGGKNNGKKLLSPNDSSVRPMMEVVRGAVFNMLQARGGYTGGLPPGKWL 82
Query: 161 DLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220
DLYSGTGSVGIEA+SRGC HF+EMDPWV+S VL PNL+ T + + S +H ++VET+LE
Sbjct: 83 DLYSGTGSVGIEALSRGCLAAHFIEMDPWVISKVLKPNLDATNYTEQSVVHMLKVETYLE 142
Query: 221 RAEQFVGKDGPFDYMSVTPPYTAVDYE------------------VVEYPLRT--DMLDT 260
+ + K FDY+SVTPPY AV Y +VEYPL++ +M +
Sbjct: 143 K-QATNPKAEVFDYISVTPPYEAVHYPTLMEQLSTSPLVGDYTYVIVEYPLKSKDEMPEA 201
Query: 261 CGCLVKIKDRRFGRTHLAIYGPD 283
CG L KI DRR+GRTHLA+YGP+
Sbjct: 202 CGPLAKIVDRRYGRTHLAVYGPN 224
>gi|108710955|gb|ABF98750.1| expressed protein [Oryza sativa Japonica Group]
Length = 238
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/174 (63%), Positives = 128/174 (73%), Gaps = 8/174 (4%)
Query: 62 LLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEE--------RTTHRLLQVLG 113
L+RYGL+PD+F + + R + ++++ R TH++LQVLG
Sbjct: 56 FLERYGLNPDDFEDDAEAEPREERRRDRRNRRSGRGEAEDAPAKAAAEPRETHKMLQVLG 115
Query: 114 GKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEA 173
GK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGTGSVGIEA
Sbjct: 116 GKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGFPASLRPGRWLDLYSGTGSVGIEA 175
Query: 174 ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+SRGCSE HFVEMDPWVVS VL PNLE TGFLDVS IH +RVE FL AE+ G
Sbjct: 176 MSRGCSEAHFVEMDPWVVSEVLKPNLECTGFLDVSHIHMIRVENFLANAEKSSG 229
>gi|255640797|gb|ACU20682.1| unknown [Glycine max]
Length = 199
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 123/195 (63%), Positives = 141/195 (72%), Gaps = 8/195 (4%)
Query: 9 ILSPSSGRLSSNSSTNL--PLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRY 66
+L P+ L N+ T+ P F S PL V KSG GL SEDKK LL++Y
Sbjct: 4 LLPPTFSPLLLNTKTDFGSPPFPLLTLSSSSTTSSPLFVSYTKSGNGLASEDKKILLEKY 63
Query: 67 G--LDPDEFLSEPSPKTRRRKEG---RGSKLVVSD-EKSQEERTTHRLLQVLGGKARRKK 120
G +D DE+ S+ S K++RRKE RG K V E + R TH+LLQVLGG ARR K
Sbjct: 64 GYDIDADEYFSQSSSKSKRRKEQPRRRGGKQVQDPPEDPKPPRVTHKLLQVLGGTARRVK 123
Query: 121 LLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSE 180
LLSPKGMDVRPMMEVVKGAAFDILQ+AGGCPA+LRPGR LDLYSGTGSVGIEA+SRGCS+
Sbjct: 124 LLSPKGMDVRPMMEVVKGAAFDILQAAGGCPAALRPGRCLDLYSGTGSVGIEALSRGCSQ 183
Query: 181 VHFVEMDPWVVSNVL 195
VHFVEMDPWVVS+VL
Sbjct: 184 VHFVEMDPWVVSDVL 198
>gi|307109177|gb|EFN57415.1| hypothetical protein CHLNCDRAFT_142855 [Chlorella variabilis]
Length = 656
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/202 (48%), Positives = 125/202 (61%), Gaps = 26/202 (12%)
Query: 105 THRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLY 163
TH+ L+V+ G A ++L SP+G RPMME+V+ A F ++ S G P SL P RWLDLY
Sbjct: 422 THQRLRVIAGAAAGRRLRSPQGDQTRPMMEMVRNAVFSMVMSLYGSPTSLPPTTRWLDLY 481
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+GTG+VGIEA+SRG + HFVEM PWVVS L+PNLE + +HT + E FL RA+
Sbjct: 482 AGTGAVGIEALSRGVGQCHFVEMSPWVVSKCLMPNLEACEMESAAVVHTGKAEDFLRRAQ 541
Query: 224 Q---FVGKDGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDML--DT 260
Q F G G FD++SV PPY VDYE VVEYP + L
Sbjct: 542 QLSRFAG--GAFDFLSVCPPYELVDYEEIFDLLHASPLLHGESIVVVEYPKKLASLVRQR 599
Query: 261 CGCLVKIKDRRFGRTHLAIYGP 282
G L K++DRR+GRT++AIYGP
Sbjct: 600 LGPLEKLRDRRYGRTYMAIYGP 621
>gi|384246870|gb|EIE20358.1| hypothetical protein COCSUDRAFT_18562 [Coccomyxa subellipsoidea
C-169]
Length = 226
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/209 (44%), Positives = 127/209 (60%), Gaps = 26/209 (12%)
Query: 98 KSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRP 156
++ E TH+ L+++GG K++ S +G RPMME V+ A FD++ S AGG P+ L
Sbjct: 17 RTAAEHKTHKRLRLVGGALAGKRITSGRGETTRPMMEKVRKAVFDMMMSFAGGNPSFLEG 76
Query: 157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216
RWLDL++GTGSVG+EA+SRG + F+E+DPWV++NVL PN+E G D + IH+ + E
Sbjct: 77 TRWLDLFAGTGSVGLEALSRGAAHCQFIELDPWVINNVLSPNIESCGASDSTVIHSGKAE 136
Query: 217 TFLERAE---QFVGKDGPFDYMSVTPPYTAVDYE------------------VVEYPLRT 255
FL+RA F K PFDY+SV PPY V YE VEYP
Sbjct: 137 AFLQRARDATHFSSK--PFDYISVCPPYLLVSYEELFDLLSTSPLLHSGSVVFVEYPQSA 194
Query: 256 DML--DTCGCLVKIKDRRFGRTHLAIYGP 282
+ DT G L ++DR++GRT +AIYGP
Sbjct: 195 SKIIPDTLGPLALLRDRKYGRTQVAIYGP 223
>gi|293336610|ref|NP_001168658.1| uncharacterized protein LOC100382446 [Zea mays]
gi|223949969|gb|ACN29068.1| unknown [Zea mays]
gi|413933137|gb|AFW67688.1| hypothetical protein ZEAMMB73_980003 [Zea mays]
Length = 200
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 83/135 (61%), Positives = 105/135 (77%), Gaps = 11/135 (8%)
Query: 58 DKKELLKRYGLDPDEFL--SEPSPKTRRR------KEGRG---SKLVVSDEKSQEERTTH 106
+++ L+ YGL+P++F +E +P+ R+ + GRG ++ V+ K +E R TH
Sbjct: 56 ERRRFLESYGLNPNDFEEDAEENPREERKDRRRRRQSGRGEQTAEAAVTPAKVEEPRETH 115
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++LQVLGGK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGT
Sbjct: 116 KMLQVLGGKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGSPASLRPGRWLDLYSGT 175
Query: 167 GSVGIEAISRGCSEV 181
GSVGIEA+SRGCSEV
Sbjct: 176 GSVGIEAMSRGCSEV 190
>gi|145346079|ref|XP_001417522.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577749|gb|ABO95815.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 468
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 96/148 (64%), Gaps = 4/148 (2%)
Query: 103 RTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLR---PGRW 159
R TH+ + ++ GK R+KLLSP G+D RPMM +V+GA FD++ + G ++++ RW
Sbjct: 228 RKTHKRMTIVAGKYARRKLLSPSGLDTRPMMSMVRGATFDMMLNFLGSRSNVQFPPDSRW 287
Query: 160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
LD++ GTG++GIE+ISRG E HFVEMDPWVV+NV NL G ++ HT V+ F+
Sbjct: 288 LDMFCGTGAIGIESISRGVVEAHFVEMDPWVVNNVTNKNLNSLGLTKQTTTHTASVQAFM 347
Query: 220 ERAEQFV-GKDGPFDYMSVTPPYTAVDY 246
+ + G G FD++S PPY V Y
Sbjct: 348 NQHHKNARGVGGAFDFISFCPPYEKVSY 375
>gi|412986233|emb|CCO17433.1| predicted protein [Bathycoccus prasinos]
Length = 547
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 106/165 (64%), Gaps = 9/165 (5%)
Query: 101 EERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLR---PG 157
EE+ TH+ LQ++ G+ R+ +L+P G++ RPMM VV+GA FD++ S G ++++
Sbjct: 320 EEKKTHKRLQIVAGRHSRRVVLTPSGLNTRPMMGVVRGATFDMILSLVGSRSNVQFPENS 379
Query: 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217
RWLDL++GTG++G+EA+SRGC + HFVEMD W V NV N++ G ++ H VET
Sbjct: 380 RWLDLFAGTGAIGLEALSRGCVDAHFVEMDDWTVKNVTRVNIKTLGEEKNATAHCASVET 439
Query: 218 FLER-AEQFVGKDGPFDYMSVTPPYTAVDY-----EVVEYPLRTD 256
FL+R ++ G G F+++S PPY + Y E+ PL +D
Sbjct: 440 FLQRHSKNTSGVGGAFNFVSFCPPYEKISYPDLLLEIDSSPLVSD 484
>gi|308803004|ref|XP_003078815.1| unnamed protein product [Ostreococcus tauri]
gi|116057268|emb|CAL51695.1| unnamed protein product [Ostreococcus tauri]
Length = 472
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 95/148 (64%), Gaps = 4/148 (2%)
Query: 103 RTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLR---PGRW 159
+ TH+ + ++ GK R+KLLSP G+D RPMM +V+GA FD++ + G ++++ RW
Sbjct: 226 KKTHKRMTIVAGKYARRKLLSPSGLDTRPMMSMVRGATFDMMLNFLGSRSNVQFPPNSRW 285
Query: 160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
LDL+ GTG++G+E+ISRGC E HFVEMDPWV++N N+ G ++ H V+ F+
Sbjct: 286 LDLFCGTGAIGLESISRGCVEAHFVEMDPWVINNCTNKNIATLGVQKQTTTHCASVQAFM 345
Query: 220 ERAEQFV-GKDGPFDYMSVTPPYTAVDY 246
+ + G G FD++S PPY V Y
Sbjct: 346 SQNHKSARGVGGAFDFISFCPPYYKVSY 373
>gi|303282743|ref|XP_003060663.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458134|gb|EEH55432.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 526
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 106/189 (56%), Gaps = 22/189 (11%)
Query: 80 KTRRRKEGRGSKLVVSDEKSQEE--RTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVK 137
K RR E + + +E+ Q E R TH+ + ++ G R+KLLSP G+D RPMM +V+
Sbjct: 243 KLLRRLESEKAAVASFNERKQTEQARKTHKRMTIVAGTYARRKLLSPSGLDTRPMMGMVR 302
Query: 138 GAAFDILQSAGGCPASLR----PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSN 193
GA FD++ + G ++++ RWLDL++GTG++G+EA+SRGC E HFVEMDPWV +N
Sbjct: 303 GATFDMVMALIGSASNVQFPDPSSRWLDLFAGTGAIGLEAMSRGCVESHFVEMDPWVTNN 362
Query: 194 VLIPNLEWTGF-----------LDVSSIH-----TVRVETFLERAEQFVGKDGPFDYMSV 237
VL N++ G ++ SIH VRV G FD++S
Sbjct: 363 VLEKNIKSLGLTRSDARVHTSSVEARSIHWSPYDPVRVAFLASHKRSAKAAGGAFDFVSF 422
Query: 238 TPPYTAVDY 246
PPY V Y
Sbjct: 423 CPPYYKVSY 431
>gi|255085040|ref|XP_002504951.1| predicted protein [Micromonas sp. RCC299]
gi|226520220|gb|ACO66209.1| predicted protein [Micromonas sp. RCC299]
Length = 121
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 85/120 (70%), Gaps = 3/120 (2%)
Query: 103 RTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLR---PGRW 159
R TH+ L ++ G R+KLLSP G+D RPMM +V+GA FD++ S G ++ RW
Sbjct: 1 RRTHKRLTIVAGTLSRRKLLSPSGLDTRPMMGMVRGATFDMIMSLIGIRSNTAFPPDSRW 60
Query: 160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
LDL++GTG++GIEAISRGC+E HFVEMDPWVV+NV NL+ G + +++HT VE FL
Sbjct: 61 LDLFAGTGAIGIEAISRGCAESHFVEMDPWVVNNVTRKNLQSLGVVSKTTVHTASVEAFL 120
>gi|221632131|ref|YP_002521352.1| N6-adenine-specific methylase [Thermomicrobium roseum DSM 5159]
gi|221157241|gb|ACM06368.1| N6-adenine-specific methylase [Thermomicrobium roseum DSM 5159]
Length = 195
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 100/190 (52%), Gaps = 29/190 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG AR ++L +P+G+ RPM + ++ A F +L S G +RP R LDLY+G+G+
Sbjct: 1 MRVIGGSARGRRLKAPRGLRTRPMADKIREALFSMLDSLG-----IRPQRVLDLYAGSGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG V FV+ + V+ NL TGF D ++H V+ FL R +
Sbjct: 56 IGIETLSRGARWVDFVDRSAAACA-VIRDNLTATGFADRGAVHCTTVQAFLRRPPR---- 110
Query: 229 DGPFDYMSVTPPYT---------AVDYE---------VVEYPLRTDMLDTCGCLVKIKDR 270
P+D++ + PPY AV VV + R M + L +++DR
Sbjct: 111 -EPYDFVIMDPPYADPTIHETMLAVARSPHVRDGTILVVGHSPRVPMPERLDGLEQLRDR 169
Query: 271 RFGRTHLAIY 280
G + +AIY
Sbjct: 170 CHGDSCVAIY 179
>gi|390562348|ref|ZP_10244573.1| conserved hypothetical protein [Nitrolancetus hollandicus Lb]
gi|390173074|emb|CCF83875.1| conserved hypothetical protein [Nitrolancetus hollandicus Lb]
Length = 194
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 99/190 (52%), Gaps = 30/190 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +L +P+GM RPM + ++ A F +L S G ++P R LDLY+G+GS
Sbjct: 1 MRVISGTARGHRLKAPRGMTTRPMADKIREAVFSVLASEG-----IQPVRVLDLYAGSGS 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIEA+SRG FVE + + V+ NL T F +++H VE+F+ R +
Sbjct: 56 VGIEALSRGAEWADFVEHNAAACA-VIRDNLASTRFTGRAAVHQATVESFISRIRE---- 110
Query: 229 DGPFDYMSVTPPYT---------------AVDYE---VVEYPLRTDMLDTCGCLVKIKDR 270
P+D++ + PPY AV++ V+ + R + D G L ++ R
Sbjct: 111 --PYDFIIMDPPYASPTIRDVIEALARSPAVEHGTILVIGHSPRVALPDRIGPLELLRQR 168
Query: 271 RFGRTHLAIY 280
G + AIY
Sbjct: 169 CHGDSCFAIY 178
>gi|309789638|ref|ZP_07684219.1| methyltransferase [Oscillochloris trichoides DG-6]
gi|308228374|gb|EFO82021.1| methyltransferase [Oscillochloris trichoides DG6]
Length = 185
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 95/193 (49%), Gaps = 28/193 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKA+ L +PKGM RPM++ VKG+ F IL+ G +R GR LDLY+GTGS
Sbjct: 1 MRVITGKAKGHTLKAPKGMGTRPMLDKVKGSLFSILEGYG----RIR-GRVLDLYAGTGS 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG S FVE V S ++ NL T + +H + V+ F++
Sbjct: 56 LGIECLSRGASAADFVEQSAHVCS-IINENLRHTKLDALGKVHCLPVDRFIQSQRGV--- 111
Query: 229 DGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDR 270
G +D + + PPY E VV + R + D L +IK R
Sbjct: 112 -GHYDIIIMDPPYADPQIEQTITNVGSFQLGHAGTLLVVGHSARVTLADAYPHLTRIKFR 170
Query: 271 RFGRTHLAIYGPD 283
R G +IY D
Sbjct: 171 RLGDACFSIYEMD 183
>gi|387219991|gb|AFJ69704.1| n6-adenine-specific methylase, partial [Nannochloropsis gaditana
CCMP526]
gi|422292740|gb|EKU20042.1| n6-adenine-specific methylase, partial [Nannochloropsis gaditana
CCMP526]
gi|422293042|gb|EKU20343.1| n6-adenine-specific methylase, partial [Nannochloropsis gaditana
CCMP526]
Length = 363
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 100/194 (51%), Gaps = 27/194 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GG AR K+L SP+ + +RPMM V+ A F L S + RP R +DL+ G GS
Sbjct: 134 LRIIGGSARGKRLDSPE-VHLRPMMSKVREALFSTLFSFDLFGS--RPPRVMDLFCGAGS 190
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV-SSIHTVRVETFLERAEQFVG 227
VG+EA+SRG E FV+M V NL+ F V I R E L R + +G
Sbjct: 191 VGLEALSRGAGEAVFVDMASECCECVE-RNLKLCNFDAVKGKIVRARAEEVL-RQPKRLG 248
Query: 228 KDGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTC---GCLVK 266
G FD +S+TPPY V Y V+EYP+ L G L+
Sbjct: 249 VIGTFDLISITPPYEEVVYADLIRDVMESPAVAEDSLIVIEYPVELGSLPFNIGKGRLLG 308
Query: 267 IKDRRFGRTHLAIY 280
+++RR+GRT LAIY
Sbjct: 309 LRNRRYGRTVLAIY 322
>gi|299116748|emb|CBN74861.1| putative S-adenosylmethionine-dependent methyltransferase
[Ectocarpus siliculosus]
Length = 363
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 102/215 (47%), Gaps = 26/215 (12%)
Query: 87 GRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS 146
GR K+ E+ + L+V GG A+ ++L SP + +RPMM VK A F L
Sbjct: 129 GRPGKVRPQGEEREVSINNAARLKVAGGIAKGRRLESPD-VFLRPMMAKVKEALFSTLMG 187
Query: 147 AGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
G R+LDL+SG+GSVGIEA+SRG FV+ +V + N GF D
Sbjct: 188 FG--VFETEDARFLDLFSGSGSVGIEALSRGAGHATFVDFAKDCC-DVCLRNANLCGFSD 244
Query: 207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYE------------------V 248
+ V L ++ G D PFD ++VTPPY V Y V
Sbjct: 245 QAKAVKGDVMDVLYNPRRY-GLDAPFDVITVTPPYEEVVYTELVKALSVSDLVAQDTLVV 303
Query: 249 VEYPLRTDMLDTC---GCLVKIKDRRFGRTHLAIY 280
+EYP+ + G +V +++RR+GRT + ++
Sbjct: 304 IEYPVELGCMPHAIGDGTMVGLRNRRYGRTVVGVW 338
>gi|298243748|ref|ZP_06967555.1| methyltransferase [Ktedonobacter racemifer DSM 44963]
gi|297556802|gb|EFH90666.1| methyltransferase [Ktedonobacter racemifer DSM 44963]
Length = 194
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 100/195 (51%), Gaps = 32/195 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+A+ K+L SPK +D RP+++ VK A FDIL ++ R+LDL+ G G+
Sbjct: 1 MRVVTGEAKGKRLKSPKTIDTRPILDRVKTALFDILS------GEVQGTRFLDLFGGVGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET--FLERAEQFV 226
VGIEA+SRG + F+E++P V +L NL+ TG ++ TVR + FL+
Sbjct: 55 VGIEALSRGAAHATFLELNPQVF-RILRENLQLTGL--INRAETVRGDAFKFLQAGAAPG 111
Query: 227 GKDGPFDYMSVTPP----YTAVDYEVVEY-PLRTD----------------MLDTCGCLV 265
P+D + V PP A E++++ PL D TC L
Sbjct: 112 AAPKPYDIIYVAPPQYQEMAARALEMLDHSPLVPDDGLVIVQIHPKERPGVAAVTCQRLT 171
Query: 266 KIKDRRFGRTHLAIY 280
+ +RR+G T L Y
Sbjct: 172 LVDERRYGSTLLMFY 186
>gi|163847955|ref|YP_001635999.1| methyltransferase [Chloroflexus aurantiacus J-10-fl]
gi|222525835|ref|YP_002570306.1| methyltransferase [Chloroflexus sp. Y-400-fl]
gi|163669244|gb|ABY35610.1| methyltransferase [Chloroflexus aurantiacus J-10-fl]
gi|222449714|gb|ACM53980.1| methyltransferase [Chloroflexus sp. Y-400-fl]
Length = 192
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 94/190 (49%), Gaps = 28/190 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKA+ +L +PKG+ RPM++ VK A F +L+ G S+ LDLY+GTGS
Sbjct: 1 MRVITGKAKGHRLKAPKGLGTRPMLDRVKEALFSVLEGYGPIRGSV-----LDLYAGTGS 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG FVE + V S ++ NL T F I+ + V+ FL R
Sbjct: 56 LGIECLSRGADSADFVERNAHVCS-IIADNLRHTRFEQQGHIYHMPVDRFLHRQRGI--- 111
Query: 229 DGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDR 270
G +D + + PPY E +V + R ++ D L +IK R
Sbjct: 112 -GRYDIIIMDPPYADPTIEATMQLVASSGVGKEGSLLIVGHSPRVELDDDYPGLHRIKFR 170
Query: 271 RFGRTHLAIY 280
R G + +IY
Sbjct: 171 RLGDSCFSIY 180
>gi|302037877|ref|YP_003798199.1| putative Ribosomal RNA small subunit methyltransferase D
[Candidatus Nitrospira defluvii]
gi|300605941|emb|CBK42274.1| putative Ribosomal RNA small subunit methyltransferase D
[Candidatus Nitrospira defluvii]
Length = 190
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 96/189 (50%), Gaps = 32/189 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL--QSAGGCPASLRPGRWLDLYSGT 166
++V+ G R ++LL P+G +RP + VK A F IL ++ G R LDLY+GT
Sbjct: 1 MRVIAGLHRGRRLLGPRGQAIRPTSDRVKEALFSILGERTTGA--------RVLDLYAGT 52
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
GS+GIEA+SRG + V FVE D + ++ NLE G +++ +V F RA Q+
Sbjct: 53 GSIGIEALSRGAAHVTFVEADRQAL-RLINSNLEQCGLQQSANVCACQVSQFFRRATQW- 110
Query: 227 GKDGPFDYMSVTPPY--------TAVDYE----------VVEYPLRTDMLDTCGCLVKIK 268
GP+D + PPY A ++ ++E+ + ++ T G L ++K
Sbjct: 111 --SGPYDIVFCDPPYQLTPELITMAQEWNAGWLADDAVVIIEHGKKAEIPQTLGLLSQVK 168
Query: 269 DRRFGRTHL 277
+G T L
Sbjct: 169 RYDYGDTAL 177
>gi|269926754|ref|YP_003323377.1| methyltransferase [Thermobaculum terrenum ATCC BAA-798]
gi|269790414|gb|ACZ42555.1| methyltransferase [Thermobaculum terrenum ATCC BAA-798]
Length = 189
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 85/158 (53%), Gaps = 12/158 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V GG+ R L SP+ + RPM + ++ A F I+ P GR LDLY+GTG+
Sbjct: 1 MRVTGGELRGVTLKSPRSLSTRPMTDRLRLALFSII-----APMEQPRGRVLDLYAGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG V FV+ + + V+ NLE T ++ + +H V++FL E
Sbjct: 56 LGIEALSRGADFVDFVDQNSSACA-VIRANLEQTKLVNRAKVHKRSVKSFLASYE----- 109
Query: 229 DGPFDYMSVTPPYTAVDY-EVVEYPLRTDMLDTCGCLV 265
PFD + + PPY D EV+ + R ML G LV
Sbjct: 110 GEPFDLIFMDPPYADADIEEVLSFISRKGMLSADGLLV 147
>gi|452819936|gb|EME26986.1| putative N6-adenine-specific methylase [Galdieria sulphuraria]
Length = 329
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 99/196 (50%), Gaps = 28/196 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTG 167
L V G + ++LL+P + +RPMM V+ A F +L LRP R LD+++GTG
Sbjct: 97 LYVNAGSVKGRRLLNPP-VYIRPMMSKVRSALFCMLTDM----KLLRPEYRILDIFAGTG 151
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VGIEA+S+ + FV+ P + V NLE F D E F++ +F
Sbjct: 152 AVGIEALSQNVGKAVFVDSSPDCCATVR-ENLERCRFSDRGDAFCSTYEDFVDNPGRFQV 210
Query: 228 KDGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGC--LVKI 267
K G F+ +++TPPY +DY VVEYP+ ++ LV +
Sbjct: 211 K-GTFELVTLTPPYEEIDYNTLMSTIATSSLIGPGSVVVVEYPIELGVMPPVIMERLVGL 269
Query: 268 KDRRFGRTHLAIYGPD 283
++RR+GRT L +YG D
Sbjct: 270 RNRRYGRTVLGLYGVD 285
>gi|226325134|ref|ZP_03800652.1| hypothetical protein COPCOM_02926 [Coprococcus comes ATCC 27758]
gi|225206482|gb|EEG88836.1| RNA methyltransferase, RsmD family [Coprococcus comes ATCC 27758]
Length = 202
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 100/174 (57%), Gaps = 16/174 (9%)
Query: 93 VVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPA 152
VVSD +QE ++V+ GKARR L++ KGM+ RP + K F+++ + G C
Sbjct: 7 VVSDIINQENDK----MRVIAGKARRIPLVTVKGMETRPTTDRTKETLFNMI-AHGLCDC 61
Query: 153 SLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212
+ +LDL+SG+G++GIEAISRG + FVE +P + ++ NL+ T D + +
Sbjct: 62 T-----FLDLFSGSGAIGIEAISRGVKKAVFVENNPNAIQCIM-ENLKKTQLADQAKVIR 115
Query: 213 VRVETFLERAEQFVGKDGPFDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLV 265
V + L R + G++ FDY+ + PPY ++ EV+ Y ++D+L+ ++
Sbjct: 116 EDVFSALRRLD---GRE-KFDYVFMDPPYNHMLEKEVLTYLAKSDLLEKDALII 165
>gi|219849855|ref|YP_002464288.1| methyltransferase [Chloroflexus aggregans DSM 9485]
gi|219544114|gb|ACL25852.1| methyltransferase [Chloroflexus aggregans DSM 9485]
Length = 192
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 95/190 (50%), Gaps = 28/190 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKA+ +L +PKG+ RPM++ VK A F +L+ G +R G LDLY+GTGS
Sbjct: 1 MRVITGKAKGHRLKAPKGLGTRPMLDRVKEALFSVLEGYG----PIR-GVVLDLYAGTGS 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG FVE + V + ++ NL T F I+ + V+ FL R
Sbjct: 56 LGIECLSRGADSADFVERNAHVCT-IIADNLRHTHFEQQGRIYQMPVDRFLHRQRGVR-- 112
Query: 229 DGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDR 270
+D + + PPY E ++ + R ++ DT L +IK R
Sbjct: 113 --HYDIIIMDPPYADPAIEATIQLVAQSDVGKEGSLLIIGHSPRVELADTYPGLHRIKYR 170
Query: 271 RFGRTHLAIY 280
R G + +IY
Sbjct: 171 RLGDSCFSIY 180
>gi|266623325|ref|ZP_06116260.1| RNA methyltransferase, RsmD family [Clostridium hathewayi DSM
13479]
gi|288864902|gb|EFC97200.1| RNA methyltransferase, RsmD family [Clostridium hathewayi DSM
13479]
Length = 187
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 76/133 (57%), Gaps = 10/133 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKARR L + G+D RP + +K F+IL P S +LDL+SG+G
Sbjct: 1 MRVIAGKARRLLLKTIDGLDTRPTTDRIKETLFNILNP--DLPGS----TFLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F+EM+P + + NL+ T F D S + V T L+R E GK
Sbjct: 55 IGIEALSRGADRAVFIEMNPK-AAECIRENLQTTKFTDESIVMNCDVLTGLKRLE---GK 110
Query: 229 DGPFDYMSVTPPY 241
D FD++ + PPY
Sbjct: 111 DYVFDFVFMDPPY 123
>gi|260892044|ref|YP_003238141.1| methyltransferase [Ammonifex degensii KC4]
gi|260864185|gb|ACX51291.1| methyltransferase [Ammonifex degensii KC4]
Length = 189
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 77/133 (57%), Gaps = 10/133 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+A+R +L + KG D+RP E VK A F+IL S P S R+LDL++GTG
Sbjct: 1 MRVIGGEAKRCRLATLKGKDLRPTSERVKEALFNILASQ--VPGS----RFLDLFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIEA+SRG FVE DP V ++ NLE TG + + ++ V + L K
Sbjct: 55 VGIEALSRGAKFAVFVERDPRAV-KLIRENLERTGLSNRARVYGRDVLSLL---PYLARK 110
Query: 229 DGPFDYMSVTPPY 241
FD + + PPY
Sbjct: 111 KERFDLVYIDPPY 123
>gi|433655103|ref|YP_007298811.1| RNA methyltransferase, RsmD family [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293292|gb|AGB19114.1| RNA methyltransferase, RsmD family [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 194
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 96/190 (50%), Gaps = 28/190 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKA+ +KL P G +RP ++VK + F+I+ A + R+LDL+SGTGS
Sbjct: 1 MRVISGKAKGRKLKCPPGKAIRPTSDMVKESLFNII------GADIYNSRFLDLFSGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + +FVE V +N+ N + LD + V L+ F
Sbjct: 55 IGIEALSRGANICYFVEK---VYNNIKYIN-DNIKLLDSTDNAKVLHMDVLDALYYFSKN 110
Query: 229 DGPFDYMSVTPPYTAVDY-----EVVEYPL------------RTDML-DTCGCLVKIKDR 270
D FD + + PPY Y ++ EY L + D+L D G L K++ R
Sbjct: 111 DIKFDIIYIDPPYYKNLYVEPLNKISEYKLLDSYGYIIVEHHKNDILNDKYGNLQKVRVR 170
Query: 271 RFGRTHLAIY 280
++G T L Y
Sbjct: 171 KYGETVLTFY 180
>gi|148656730|ref|YP_001276935.1| putative methyltransferase [Roseiflexus sp. RS-1]
gi|148568840|gb|ABQ90985.1| putative methyltransferase [Roseiflexus sp. RS-1]
Length = 205
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 84/158 (53%), Gaps = 11/158 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ +L +PKG+ RPM++ VK A F +L+ G +R GR LDLY+GTG+
Sbjct: 1 MRVITGTAKGHRLKAPKGLGTRPMLDRVKEALFSVLEGYG----PIR-GRVLDLYAGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG S FVE V ++ NLE T D + + + VE FL R G
Sbjct: 56 LGIECLSRGASWADFVEHKAHVC-QIIRENLEHTRLADRARVFQMPVERFLHRQ----GP 110
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYPLR-TDMLDTCGCLV 265
+D + + PPY E + D+L G LV
Sbjct: 111 HEKYDIIIMDPPYADPAIEATICAVHDADLLKDTGLLV 148
>gi|283798042|ref|ZP_06347195.1| RNA methyltransferase, RsmD family [Clostridium sp. M62/1]
gi|291074344|gb|EFE11708.1| RNA methyltransferase, RsmD family [Clostridium sp. M62/1]
gi|295091819|emb|CBK77926.1| RNA methyltransferase, RsmD family [Clostridium cf. saccharolyticum
K10]
Length = 190
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 78/139 (56%), Gaps = 11/139 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L +P+GMD RP + +K F+++Q L R+LDL+SG+G
Sbjct: 1 MRVIAGSARRLLLKAPEGMDTRPTTDRIKETLFNMIQD------ELYHCRFLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FVE P V V+ NL+ T D + + V+T L R E+ +
Sbjct: 55 IGIEALSRGGELAVFVENSPKAVE-VIRSNLKTTHLEDRAMVMNCDVQTALNRLEE---R 110
Query: 229 DGPFDYMSVTPPYTAVDYE 247
FD++ + PPY + YE
Sbjct: 111 GMSFDFIFMDPPYNHL-YE 128
>gi|392374452|ref|YP_003206285.1| methyltransferase [Candidatus Methylomirabilis oxyfera]
gi|258592145|emb|CBE68450.1| putative methyltransferase [Candidatus Methylomirabilis oxyfera]
Length = 185
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 83/142 (58%), Gaps = 12/142 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGR-WLDLYSGTG 167
++V+GG AR +++L+P+G RP + ++ F++L A GR +LDLY+GTG
Sbjct: 1 MRVIGGLARGRRILAPRGRMTRPTSDYLREVLFNLL-------AQQVEGRTFLDLYAGTG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VGIEA+SRG + FVE D ++ +L NL+ +GF D + + ++ V +L RA V
Sbjct: 54 AVGIEALSRGAATAVFVEHDRSALT-MLYRNLDTSGFRDRAQVVSMEVLRYLRRA---VC 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVV 249
FD + + PPY D E V
Sbjct: 110 GSQRFDLIFLDPPYLHADAEAV 131
>gi|189424829|ref|YP_001952006.1| methyltransferase [Geobacter lovleyi SZ]
gi|189421088|gb|ACD95486.1| methyltransferase [Geobacter lovleyi SZ]
Length = 189
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 82/143 (57%), Gaps = 9/143 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR +L +P+G RP + VK A F +L SAG L R LDL++G+GS
Sbjct: 1 MRVIAGKARGMRLTAPRGTTTRPTSDRVKEALFSLLDSAG----RLDGMRVLDLFAGSGS 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V F+E D + ++ + NL TGF D + + LER V +
Sbjct: 57 LGIEALSRGAEQVTFIEKDRHALESLRL-NLGHTGFSDRAEVLPFDCLQALER---LVRQ 112
Query: 229 DGPFDYMSVTPPYTA-VDYEVVE 250
FD + + PPY A + +V+E
Sbjct: 113 KVCFDLILLDPPYQAGLHQKVIE 135
>gi|84999340|ref|XP_954391.1| hypothetical protein [Theileria annulata]
gi|65305389|emb|CAI73714.1| hypothetical protein, conserved [Theileria annulata]
Length = 346
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 118/244 (48%), Gaps = 35/244 (14%)
Query: 68 LDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEERTTHRL------------------- 108
+ +E + E PK+R+ K KL +S ++ +T ++L
Sbjct: 85 FNHEEVIEEKQPKSRKNKLNYTQKLNISRPINKNVKTRYKLQQFPKKQGVTKDGSYKFCS 144
Query: 109 -LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
L++ GG R +KL P + VRP+M VK + F+ L S + +DLY GTG
Sbjct: 145 NLRICGGAIRGRKLCIPP-IYVRPVMSRVKVSVFNYLNSLNMFSID-KETNVIDLYCGTG 202
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF-LERAEQFV 226
S+G+E++S G S+ FV++ + V + N + G+ D I +R ++ L +
Sbjct: 203 SLGLESLSYGSSKCTFVDISLKCLKAVSL-NSQKCGYQDKCRI--IRCDSMELISSPHLY 259
Query: 227 GKDGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCG-CLVKIKDRRFGRTHLAIYGPDWA 285
+ FD M V+PPY V Y +++L+T L IK++++GRT +AIY D +
Sbjct: 260 NINEKFDLMFVSPPYEEVVY--------SEILETVNERLFGIKNKKYGRTVIAIYVHDPS 311
Query: 286 QKKR 289
K+
Sbjct: 312 SNKQ 315
>gi|296133586|ref|YP_003640833.1| methyltransferase [Thermincola potens JR]
gi|296032164|gb|ADG82932.1| methyltransferase [Thermincola potens JR]
Length = 185
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 30/192 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ +KL +P+GM+ RP + VK + F+IL + +LDL++GTGS
Sbjct: 1 MRVITGIAKGRKLKAPRGMNTRPTTDRVKESLFNILGE------KVINSVFLDLFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG SE F+E D V V++ NL TG D ++ V +RA +GK
Sbjct: 55 IGIEALSRGASEAVFIEKDVRVYK-VILENLAHTGLADFGEVYRQDV----QRALSLLGK 109
Query: 229 -DGPFDYMSVTPPYTA-VDYEVVEYPLRTDMLDTCGCLV-----------------KIKD 269
FD + PPY + +E R D++ G +V K +
Sbjct: 110 RQKKFDIIFADPPYLQYFERSTLENICRFDLIKPDGIVVVESSTLDQLPERVLRLQKYRT 169
Query: 270 RRFGRTHLAIYG 281
++G L YG
Sbjct: 170 EKYGNIALNFYG 181
>gi|269837913|ref|YP_003320141.1| hypothetical protein Sthe_1886 [Sphaerobacter thermophilus DSM
20745]
gi|269787176|gb|ACZ39319.1| Protein of unknown function methylase putative [Sphaerobacter
thermophilus DSM 20745]
Length = 194
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 75/134 (55%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + +L P+ RPM + V+ A F +L + G +RP R LDLY+G+G
Sbjct: 1 MRVIAGTMKGHQLKVPRTRRTRPMSQRVREALFMVLHTLG-----VRPRRVLDLYAGSGG 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FVE +P + V+ NL T F D +++H V++FL R +
Sbjct: 56 IGIEALSRGAEWCDFVEQNPAACA-VIRDNLASTRFTDRAAVHQTTVQSFLSRPLE---- 110
Query: 229 DGPFDYMSVTPPYT 242
P+D + + PPY
Sbjct: 111 --PYDLVVMDPPYA 122
>gi|449017917|dbj|BAM81319.1| similar to N6-adenine-specific methylase [Cyanidioschyzon merolae
strain 10D]
Length = 354
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 33/201 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L++ GG AR ++L SP + VRP M V+ A F IL+ P S +P R+LDL+ G G+
Sbjct: 141 LRITGGTARGRRLESPP-VYVRPAMAQVREACFSILRELQILP-SRQPVRFLDLFCGAGT 198
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD-VSSIHTVRVETFLERAEQFVG 227
+G EA+SRG S FV+ P + V N+ G + ++ + VE +L A
Sbjct: 199 MGFEALSRGASSAVFVDRSPECCACVRR-NMSKLGVGEGIALVRETTVEEYLATA----- 252
Query: 228 KDGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTC--GCLVKI 267
DG +++TPPY + Y+ ++EYP L L+ +
Sbjct: 253 PDGVLQIVALTPPYEEISYDELLRTLSQSAVISERTVVMLEYPYELGSLPPVIENRLIGM 312
Query: 268 KDRRFGRTHLAIYG----PDW 284
++RR+GRT L +Y P+W
Sbjct: 313 RNRRYGRTVLGMYACQPDPNW 333
>gi|428182160|gb|EKX51022.1| hypothetical protein GUITHDRAFT_151135 [Guillardia theta CCMP2712]
Length = 323
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 95/196 (48%), Gaps = 30/196 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRP-GRWLDLYSGTG 167
++V GG A+ +KL P+ + +RPMM VK A F IL LR LD ++G G
Sbjct: 111 IRVAGGTAKGRKLNRPE-VYLRPMMGKVKEALFSILTEFD----VLRDDAIALDTFAGCG 165
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
SVGIEA+SRG + FV+ N + NLE F D + + E + Q +
Sbjct: 166 SVGIEALSRGVGKAVFVDYSKE-ACNTIRGNLEVCEFEDRGMVVCSKAEAIYDDPVQVLA 224
Query: 228 KDG--PFDYMSVTPPYTAVDYE-------------------VVEYPLRTDMLD--TCGCL 264
K G FD +++TPPY VDY VVEYP+ L L
Sbjct: 225 KMGGKGFDLLTMTPPYEEVDYGDLLGRITKSEHLMNDGCIVVVEYPIELGSLPPVVGNRL 284
Query: 265 VKIKDRRFGRTHLAIY 280
V +++R++GRT LAIY
Sbjct: 285 VGMRNRKYGRTMLAIY 300
>gi|304316956|ref|YP_003852101.1| methyltransferase [Thermoanaerobacterium thermosaccharolyticum DSM
571]
gi|302778458|gb|ADL69017.1| methyltransferase [Thermoanaerobacterium thermosaccharolyticum DSM
571]
Length = 194
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 95/190 (50%), Gaps = 28/190 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKA+ +KL P G +RP ++VK + F+I+ A + R+LDL+SGTGS
Sbjct: 1 MRVISGKAKGRKLKCPPGKAIRPTSDMVKESLFNII------GADIYNSRFLDLFSGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + +FVE V +N+ N + LD + V L+ F
Sbjct: 55 IGIEALSRGANICYFVEK---VYNNIKYIN-DNIKLLDSTDNAKVLHMDVLDALYYFSKN 110
Query: 229 DGPFDYMSVTPPYTAVDY-----EVVEYPL------------RTDML-DTCGCLVKIKDR 270
D FD + + PPY Y ++ EY L + D+L D L K++ R
Sbjct: 111 DIKFDIIYIDPPYYKNLYVEPLNKISEYKLLDSYGYIIVEHHKNDILNDKYENLQKVRVR 170
Query: 271 RFGRTHLAIY 280
++G T L Y
Sbjct: 171 KYGETVLTFY 180
>gi|134299931|ref|YP_001113427.1| putative methyltransferase [Desulfotomaculum reducens MI-1]
gi|134052631|gb|ABO50602.1| putative methyltransferase [Desulfotomaculum reducens MI-1]
Length = 184
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 14/135 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +KL SPKGM RP + V+ A F+IL S P S R+LDL+SGTG+
Sbjct: 1 MRIIAGTARGRKLKSPKGMTTRPTSDRVREALFNILSSY--VPGS----RFLDLFSGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE--TFLERAEQFV 226
V IEA+SRG + VE D + ++ NL LD + + TV V T + R
Sbjct: 55 VAIEALSRGAEKATLVERDKN-TARIIYDNLRMCNVLDKAEVLTVDVSQATLIMRR---- 109
Query: 227 GKDGPFDYMSVTPPY 241
K FD + + PPY
Sbjct: 110 -KKETFDLIFIDPPY 123
>gi|325661177|ref|ZP_08149804.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
4_1_37FAA]
gi|325472684|gb|EGC75895.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
4_1_37FAA]
Length = 189
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 84/152 (55%), Gaps = 12/152 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+R +L + G+D RP + +K F+++ L R+LDL++G+G
Sbjct: 1 MRVIAGSAKRLQLKTLDGLDTRPTTDRIKETLFNMIS------PYLYDCRFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E FVE +P ++ + NL+ T + + T V T L R E
Sbjct: 55 IGIEALSRGAGEAVFVEQNPKAMA-CIKENLKKTKLEERAVTMTTDVMTALRRMEG---- 109
Query: 229 DGPFDYMSVTPPYTA-VDYEVVEYPLRTDMLD 259
G FDY+ + PPY ++ +V+EY + ++D
Sbjct: 110 SGTFDYIFMDPPYNKLLEKQVLEYLAESKLID 141
>gi|310659144|ref|YP_003936865.1| putative methyltransferase [[Clostridium] sticklandii]
gi|308825922|emb|CBH21960.1| putative methyltransferase [[Clostridium] sticklandii]
Length = 188
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 94/190 (49%), Gaps = 27/190 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR KKLLSP+ +RP ++ VK + F+I+ +R +LDL+ G+G+
Sbjct: 1 MRVIAGKARGKKLLSPQTDKIRPTLDRVKESLFNII------GFEIRDCSFLDLFCGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEAISR +V+FV+ D + + N+E F D + ++ + F E K
Sbjct: 55 IGIEAISRDADKVYFVDRDSSSIE-LTQKNIESCKF-DSTKYKILKADAF-EALNSLANK 111
Query: 229 DGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDR 270
DY+ + PPY +D + + E + + + G L K +++
Sbjct: 112 GIKLDYIFMDPPYGFLDIDKIIEKISQLDLLSSGGLLIAETDIDDSISENIGKLNKTREK 171
Query: 271 RFGRTHLAIY 280
++ T L+ Y
Sbjct: 172 KYSITKLSFY 181
>gi|428672075|gb|EKX72990.1| conserved hypothetical protein [Babesia equi]
Length = 396
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 102/225 (45%), Gaps = 27/225 (12%)
Query: 78 SPKTRRRKEGRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVK 137
S K + R + R +++ + T ++++ GG R +KL P + +RPMM VK
Sbjct: 131 SKKVKSRYKFRPTRMQGIKLHDESSFNTVSMMKINGGSIRGRKLCCPP-VYIRPMMSRVK 189
Query: 138 GAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP 197
GA F LQ G R +DL+ GTGSVG+EA+S G + FV++ I
Sbjct: 190 GALFSSLQHIGMFSPD-RECSVIDLFCGTGSVGLEALSYGATNCTFVDISMECCKATSI- 247
Query: 198 NLEWTGFLDVSSIHTVRVETFLERAEQFVGK-DGPFDYMSVTPPYTAVDYE--------- 247
N GF D S + +R + ++ + FD + PPY V Y
Sbjct: 248 NAGHCGFKDKSRV--LRADAMESITSPWLHSINQKFDLLIACPPYQEVIYSELIEKIANS 305
Query: 248 ---------VVEYPLRTDMLDTC---GCLVKIKDRRFGRTHLAIY 280
V+EYP + L G L+ IK+RR+GRT LA+Y
Sbjct: 306 TILNKNAAVVIEYPKEINFLPQNVGDGKLLGIKNRRYGRTILAVY 350
>gi|323702702|ref|ZP_08114363.1| methyltransferase [Desulfotomaculum nigrificans DSM 574]
gi|333923274|ref|YP_004496854.1| methyltransferase [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|323532365|gb|EGB22243.1| methyltransferase [Desulfotomaculum nigrificans DSM 574]
gi|333748835|gb|AEF93942.1| methyltransferase [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 187
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 89/160 (55%), Gaps = 15/160 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR + L SPKGM RP + V+ A F+IL A P S ++LDL+SGTG+
Sbjct: 1 MRIIAGSARGRTLKSPKGMSTRPTTDRVREALFNIL--AHQVPDS----KFLDLFSGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
V IEA+SRG + VE D + +++ NL+ GF + + + + V +RA Q +GK
Sbjct: 55 VAIEALSRGAARAVLVEKD-RSAATIILNNLKLCGFSEKAQVLVLDV----QRAIQTLGK 109
Query: 229 DGP-FDYMSVTPPYTAVDYEV--VEYPLRTDMLDTCGCLV 265
FD + + PPY +EV +E R +L G LV
Sbjct: 110 KKEVFDLIFIDPPYKH-GHEVPTMEGIERQGLLSPHGTLV 148
>gi|414154287|ref|ZP_11410606.1| putative methyltransferase [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
gi|411454078|emb|CCO08510.1| putative methyltransferase [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
Length = 184
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 95/191 (49%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR + L SP+GM RP + V+ A F+IL P S R+LDL+SGTG+
Sbjct: 1 MRVIAGSARGRILKSPRGMSTRPTADRVREALFNILSPL--VPDS----RFLDLFSGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
V IEA+SRG + VE D + ++ NL+ G L+ + + + V +R Q +G
Sbjct: 55 VAIEALSRGAARAVLVEKDRQ-TAGIIYENLKLCGLLNQAEVLAMDV----DRGLQVLGQ 109
Query: 228 KDGPFDYMSVTPPY-TAVDYEVVEYPLRTDML-----------------DTCGCLVKIKD 269
+ FD + + PPY + +E LR ++L D G LV +
Sbjct: 110 RKDVFDLIFIDPPYRKGFEKPTIEKVLRHNILAAGGIAVVESNRADLPPDRVGNLVAYRC 169
Query: 270 RRFGRTHLAIY 280
+++G T L Y
Sbjct: 170 QQYGDTALTFY 180
>gi|403386867|ref|ZP_10928924.1| methyltransferase [Clostridium sp. JC122]
Length = 185
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 74/134 (55%), Gaps = 10/134 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG A+ + LL P+GM RP ++ +K + F+I+Q +R +DL+SGTGS
Sbjct: 1 MRVIGGIAKGRNLLPPEGMGTRPTLDRIKESIFNIIQH------RVRGAVTVDLFSGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA SRG + + +EM S +L N+E F D+ FL EQF +
Sbjct: 55 LGIEAASRGAEKSYLIEMGDSSYS-LLKKNVENLKFQDLCVTLNGDCYKFL---EQFYKE 110
Query: 229 DGPFDYMSVTPPYT 242
D FD + + PPY
Sbjct: 111 DKKFDIIFIDPPYA 124
>gi|94967148|ref|YP_589196.1| hypothetical protein Acid345_0117 [Candidatus Koribacter versatilis
Ellin345]
gi|94549198|gb|ABF39122.1| conserved hypothetical protein 95 [Candidatus Koribacter versatilis
Ellin345]
Length = 186
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 76/133 (57%), Gaps = 9/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R + L +P+GMDVRP + ++ F++L S L RW+DL++GTG+
Sbjct: 1 MRIISGKFRSRSLKTPQGMDVRPSSDRLRETLFNVLASG----YQLEDSRWIDLFAGTGA 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA+SRG ++FVE P ++ + N++ D + + T L + E G
Sbjct: 57 VGLEALSRGAGYIYFVEKAPK-IARITQENVKSLDAQDQAEVLTSDANAGLRQLE---GI 112
Query: 229 DGPFDYMSVTPPY 241
D P DY+ + PPY
Sbjct: 113 D-PVDYVFLDPPY 124
>gi|331085068|ref|ZP_08334155.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330408768|gb|EGG88233.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 189
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 83/152 (54%), Gaps = 12/152 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+R +L + G+D RP + +K F+++ L R+LDL++G+G
Sbjct: 1 MRVIAGSAKRLQLKTLDGLDTRPTTDRIKETLFNMISP------YLYDCRFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E FVE +P ++ + NL+ T + + V T L R E
Sbjct: 55 IGIEALSRGAGEAVFVEQNPKAMA-CIKENLKKTKLEERAVTMATDVMTALRRMEG---- 109
Query: 229 DGPFDYMSVTPPYTA-VDYEVVEYPLRTDMLD 259
G FDY+ + PPY ++ +V+EY + ++D
Sbjct: 110 SGTFDYIFMDPPYNKLLEKQVLEYLAESKLID 141
>gi|154483594|ref|ZP_02026042.1| hypothetical protein EUBVEN_01298 [Eubacterium ventriosum ATCC
27560]
gi|149735504|gb|EDM51390.1| RNA methyltransferase, RsmD family [Eubacterium ventriosum ATCC
27560]
Length = 185
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 92/158 (58%), Gaps = 12/158 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKARR +L + GM RP + +K F+++ + P ++ +LDL+SG+G+
Sbjct: 1 MRVIAGKARRLQLKTIDGMGTRPTTDRIKETLFNMINN--DMPQAV----FLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG S+ +FVE + V + NL +T D + + + VE+ L+ E V
Sbjct: 55 IGIEALSRGASKAYFVESNKKAVQ-CIKDNLNFTKLQDDAVVMAMPVESALKDLEHKV-- 111
Query: 229 DGPFDYMSVTPPYTAV-DYEVVEYPLRTDMLDTCGCLV 265
FD++ + PPY + + +V+ + ++D+++ ++
Sbjct: 112 --KFDFIFMDPPYDKLYEKDVLIFLSKSDLINKSSRII 147
>gi|253577772|ref|ZP_04855044.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850090|gb|EES78048.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 189
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 12/148 (8%)
Query: 105 THRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYS 164
T ++V+ GKARR L + G+D RP + +K F+ILQ L R+LDL+S
Sbjct: 3 TESEMRVIAGKARRLNLKTIPGIDTRPTTDRIKETLFNILQP------ELLECRFLDLFS 56
Query: 165 GTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
G+G +GIEA+SRG S FVE +P + + NL +T + + + V L+
Sbjct: 57 GSGGIGIEALSRGASYAVFVEKNPKAAA-CIRENLAFTKLAEDGKLLNMDV---LQALRS 112
Query: 225 FVGKDGPFDYMSVTPPY-TAVDYEVVEY 251
GK G FD + + PPY ++ +V+EY
Sbjct: 113 LEGK-GVFDIIFMDPPYNNELERQVLEY 139
>gi|156741789|ref|YP_001431918.1| methyltransferase [Roseiflexus castenholzii DSM 13941]
gi|156233117|gb|ABU57900.1| putative methyltransferase [Roseiflexus castenholzii DSM 13941]
Length = 191
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 77/134 (57%), Gaps = 10/134 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ ++L +P+G+ RPM++ VK A F +++ G +R GR LDLY+GTGS
Sbjct: 1 MRVITGTAKGRRLKAPEGLGTRPMLDRVKEALFSVIEGYG----PIR-GRVLDLYAGTGS 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG + FVE V ++ NLE T D + I + VE FL + G
Sbjct: 56 LGIECLSRGAAWADFVEHKVH-VCRIIRENLEHTRLADRARIFPMSVERFL----RTYGH 110
Query: 229 DGPFDYMSVTPPYT 242
+D + + PPY
Sbjct: 111 REKYDIIIMDPPYA 124
>gi|82753598|ref|XP_727743.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23483734|gb|EAA19308.1| similar to unknown proteins [Plasmodium yoelii yoelii]
Length = 455
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 25/236 (10%)
Query: 65 RYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSP 124
+YG+ ++ P ++ + + K+ +E + ++L + G + KKL SP
Sbjct: 192 KYGIPEEKLNIRRLPNSKIKSKYNFCKIKTYNETTNINYKKKKILTINEGILKNKKLYSP 251
Query: 125 KGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFV 184
+ RPMM VK + F+IL G ++ LD +SG+G++GIE ISRG V FV
Sbjct: 252 -DIYTRPMMSKVKESLFNILVHLG--VFNINNFNVLDAFSGSGNLGIECISRGLENVTFV 308
Query: 185 EMDPWVVSNVLIPNLEWTGFLDVSS-IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243
++ + NL+ ++++ I V L+ +F D ++ TPPY
Sbjct: 309 DL-SLNSCRTICENLKLCNIQNLNNKIIRSDVLELLKNPYKFDILD-KYNLAFFTPPYEQ 366
Query: 244 VDYE------------------VVEYPLRTDML-DTCGCLVKIKDRRFGRTHLAIY 280
+ Y +EYP DML L+ +++R+FGRT+ AIY
Sbjct: 367 IVYSELVHSISKSELFDNDALIFIEYPKEIDMLPQKVDNLIGLRNRKFGRTYFAIY 422
>gi|409911782|ref|YP_006890247.1| DNA methyltransferase [Geobacter sulfurreducens KN400]
gi|298505356|gb|ADI84079.1| DNA methyltransferase, putative [Geobacter sulfurreducens KN400]
Length = 187
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 13/136 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG AR ++L +P+G VRP + +K A F+IL S R LDL++GTG+
Sbjct: 1 MRVVGGSARGRRLAAPRGNRVRPTADRIKEALFNILHSG---MEGFEEVRVLDLFAGTGN 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI---HTVRVETFLERAEQF 225
+GIEA+SRGCSE FV+ V+ V+ NL+ GF D + I + FLER
Sbjct: 58 LGIEALSRGCSEAVFVDSHRESVA-VIRRNLDELGFGDRARIIARDALTAIDFLER---- 112
Query: 226 VGKDGPFDYMSVTPPY 241
+ F + + PPY
Sbjct: 113 --EGASFRLVMLDPPY 126
>gi|420155020|ref|ZP_14661891.1| RNA methyltransferase, RsmD family [Clostridium sp. MSTE9]
gi|394759862|gb|EJF42525.1| RNA methyltransferase, RsmD family [Clostridium sp. MSTE9]
Length = 183
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 92/188 (48%), Gaps = 29/188 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR KKL S +G VRP + VK A F+I+Q L R LDL++G+G
Sbjct: 1 MRIITGAARGKKLQSLEGERVRPTPDRVKEALFNIIQF------DLEGRRVLDLFAGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG E FV+ + V+ N+ TGF + + + +FL R Q
Sbjct: 55 LGLEALSRGAQEAVFVD-SSRDSAGVVERNIAATGFGERAKVVNADFASFLSRNPQ---- 109
Query: 229 DGPFDYMSVTPPY-----------TAVDYE-----VVEYPLRTDMLDTCGCLVKIKDRRF 272
PFD + PPY TA + E+P ++ + G VK++ R+
Sbjct: 110 --PFDIAFLDPPYRTGLLQQALPQTAAVMNHGGTIICEHPSDEELPLSAGDFVKVRSYRY 167
Query: 273 GRTHLAIY 280
G+ L +Y
Sbjct: 168 GKILLTVY 175
>gi|399924351|ref|ZP_10781709.1| RsmD family RNA methyltransferase [Peptoniphilus rhinitidis 1-13]
Length = 188
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 99/195 (50%), Gaps = 35/195 (17%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ G R KL +PKGMD RP + VK + F+IL Q+ G LDL+ G+G
Sbjct: 1 MRIISGNRRGLKLRAPKGMDTRPTEDRVKESVFNILGQNFDGDIV-------LDLFCGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ GIE ISRG +V+FV+ + V NLE FL+ V +E ++ +A + +
Sbjct: 54 ANGIEFISRGAEKVYFVDNSKEAIDCVK-SNLEKARFLN----QAVVIENYMNKAIKNL- 107
Query: 228 KDGPFDYMSVTPPYTAVD-YE------------------VVEYPLRTDMLDTCGCLVKIK 268
D FDY+ + PP+ D Y+ +VE+ +L G V+IK
Sbjct: 108 -DIKFDYIYIDPPFDRGDLYKKSFKLIRENKILKSEGKLIVEHSSDKSLLIGQG-FVEIK 165
Query: 269 DRRFGRTHLAIYGPD 283
++++G T ++I G D
Sbjct: 166 NKKYGNTSISICGWD 180
>gi|39996346|ref|NP_952297.1| DNA methyltransferase [Geobacter sulfurreducens PCA]
gi|39983226|gb|AAR34620.1| DNA methyltransferase, putative [Geobacter sulfurreducens PCA]
Length = 187
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 76/133 (57%), Gaps = 7/133 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG AR ++L +P+G VRP + +K A F+IL S R LDL++GTG+
Sbjct: 1 MRVVGGSARGRRLAAPRGNRVRPTADRIKEALFNILHSG---MEGFEEVRVLDLFAGTGN 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRGCSE FV+ V+ V+ NL+ GF D + I T ++ E+ +
Sbjct: 58 LGIEALSRGCSEAVFVDSHRESVA-VIRRNLDELGFGDRARIIARDALTAIDYLER---E 113
Query: 229 DGPFDYMSVTPPY 241
F + + PPY
Sbjct: 114 GASFRLVMLDPPY 126
>gi|71032457|ref|XP_765870.1| hypothetical protein [Theileria parva strain Muguga]
gi|68352827|gb|EAN33587.1| hypothetical protein TP01_0343 [Theileria parva]
Length = 335
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 117/263 (44%), Gaps = 46/263 (17%)
Query: 68 LDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEERTTHRL------------------- 108
D DE + E PK + K KL +S ++ +T ++L
Sbjct: 46 FDHDEVIEEKPPKFMKNKLNHAQKLHISRPINKSVKTRYKLQQFPKKQGVTKDGAYKFCS 105
Query: 109 -LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
L++ GG R +KL P + VRP M VK + F+ L S + +DLY GTG
Sbjct: 106 NLRICGGSIRGRKLCIP-PIYVRPAMAKVKISVFNYLNSLSMFSID-KETNVIDLYCGTG 163
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF-LERAEQFV 226
S+G+E++S G S+ FV+ + V + N E + D + +R ++ L +
Sbjct: 164 SLGLESLSYGASKCTFVDTSLKCLKAVSL-NSEKCNYEDKCRL--IRCDSMELISSPHLY 220
Query: 227 GKDGPFDYMSVTPPYTAVDY-EVVEYPLRTDMLDTCGCLVK------------------- 266
+ FD M V+PPY V Y E++EY ++L+ ++
Sbjct: 221 NINEKFDLMFVSPPYEEVVYSEILEYISNCNILNKDAIVIVEYPKELLALAHTINDKLFG 280
Query: 267 IKDRRFGRTHLAIYGPDWAQKKR 289
+K++++GRT +AIY + + K+
Sbjct: 281 LKNKKYGRTVIAIYVYNPSSNKQ 303
>gi|346306212|ref|ZP_08848374.1| RsmD family RNA methyltransferase [Dorea formicigenerans
4_6_53AFAA]
gi|345905933|gb|EGX75668.1| RsmD family RNA methyltransferase [Dorea formicigenerans
4_6_53AFAA]
Length = 183
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 12/158 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR +L + GMD RP + +K F+++ A L +LDL+SG+G
Sbjct: 1 MRVIAGTARRLQLKTLDGMDTRPTTDRIKETLFNMI------SAELYDSNFLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FVE +P + + NLE T D + + V L R +
Sbjct: 55 IGIEALSRGAANAVFVEKNPKAMK-CIQENLESTKLKDRAKTMQMDVFAALSR----LNG 109
Query: 229 DGPFDYMSVTPPYTAV-DYEVVEYPLRTDMLDTCGCLV 265
+ F+Y+ + PPY + +V+E+ T +L G ++
Sbjct: 110 EWKFEYIFMDPPYNHEWEKQVLEFLADTTLLADDGIII 147
>gi|323484799|ref|ZP_08090156.1| hypothetical protein HMPREF9474_01907 [Clostridium symbiosum
WAL-14163]
gi|323401905|gb|EGA94246.1| hypothetical protein HMPREF9474_01907 [Clostridium symbiosum
WAL-14163]
Length = 186
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 98/193 (50%), Gaps = 13/193 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRPGRWLDLYSGTG 167
++V+ G A+R L + +G D RP + +K F+++Q+ GC +LDL+SG+G
Sbjct: 1 MRVIAGSAKRLLLKTIEGKDTRPTTDRIKETLFNMMQNDVYGCT-------FLDLFSGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG VE +P + + NL+ T D +++ V T L+R E+
Sbjct: 54 AIGIEALSRGAEMAVMVEHNPR-AAQCIRENLKITHLEDKATVMNCDVITALKRLEE--- 109
Query: 228 KDGPFDYMSVTPPYTA-VDYEVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWAQ 286
+ FD + + PPY ++ V+EY + + + ++ R G +L+ G + +
Sbjct: 110 RQLVFDIIFMDPPYNQLLEKAVLEYLVHSALTHADTLIIAEASRETGMDYLSELGFELVR 169
Query: 287 KKRKSEKKIPIVT 299
+K K +T
Sbjct: 170 EKEYKTNKHLFIT 182
>gi|166031898|ref|ZP_02234727.1| hypothetical protein DORFOR_01599 [Dorea formicigenerans ATCC
27755]
gi|166028351|gb|EDR47108.1| RNA methyltransferase, RsmD family [Dorea formicigenerans ATCC
27755]
Length = 183
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 12/158 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR +L + GMD RP + +K F+++ A L +LDL+SG+G
Sbjct: 1 MRVIAGTARRLQLKTLDGMDTRPTTDRIKETLFNMI------SAELYDSNFLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FVE +P + + NLE T D + + V L R +
Sbjct: 55 IGIEALSRGAANAVFVEKNPKAMK-CIQENLESTKLKDRAKTMQMDVFAALSR----LNG 109
Query: 229 DGPFDYMSVTPPYTAV-DYEVVEYPLRTDMLDTCGCLV 265
+ F+Y+ + PPY + +V+E+ T +L G ++
Sbjct: 110 EWKFEYIFMDPPYNHEWEKQVLEFLTDTTLLADDGIII 147
>gi|404481983|ref|ZP_11017212.1| RsmD family RNA methyltransferase [Clostridiales bacterium OBRC5-5]
gi|404344953|gb|EJZ71308.1| RsmD family RNA methyltransferase [Clostridiales bacterium OBRC5-5]
Length = 184
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 95/186 (51%), Gaps = 14/186 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR L +PKG RP + +K F+I+ + L +LDL++G+G
Sbjct: 1 MRVISGTARSLILKTPKGTSTRPTTDKIKETLFNIISN------ELYNATFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E +F ++D + + NLE T +D ++I E LE+ + GK
Sbjct: 55 IGIEALSRGAKEAYFCDIDREAIRCIR-ENLEHTKLIDKATILKGSFEANLEKIKTH-GK 112
Query: 229 DGPFDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWAQK 287
FD + + PPY + + ++ + + ++D ++ ++ + THL+ DW
Sbjct: 113 --KFDIVFIDPPYQKGFEDKCLDILINSTLIDEHTLVIIEEEFKTDTTHLS---KDWYID 167
Query: 288 KRKSEK 293
K K K
Sbjct: 168 KVKEYK 173
>gi|148264544|ref|YP_001231250.1| putative methyltransferase [Geobacter uraniireducens Rf4]
gi|146398044|gb|ABQ26677.1| putative methyltransferase [Geobacter uraniireducens Rf4]
Length = 207
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 96/186 (51%), Gaps = 19/186 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++ G A+ +KL SPK M VRP + VK A F+IL S G + L R LD+++GTG+
Sbjct: 19 LRIISGSAKGRKLFSPKNMRVRPTADRVKEALFNILTSLIGDFSDL---RVLDIFAGTGN 75
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI----HTVRVETFLERAEQ 224
+GIEA+SRG + FV+ + ++ NLE GF + I V ++ +R E+
Sbjct: 76 LGIEALSRGGTRTVFVDSHRESAA-IIRKNLEMLGFDQKAGILVQEALVALKALEKRGEK 134
Query: 225 F--VGKDGPF---------DYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKDRRFG 273
F V D P+ +Y++V+ T V E+ + + + G L + R +G
Sbjct: 135 FHLVFLDPPYQTGLTEKTLEYLAVSGLITDETIIVAEFSAQEAIPTSFGQLQEFDRRVYG 194
Query: 274 RTHLAI 279
T LA
Sbjct: 195 DTALAF 200
>gi|56964143|ref|YP_175874.1| N-6 adenine-specific DNA methylase [Bacillus clausii KSM-K16]
gi|56910386|dbj|BAD64913.1| N6-adenine-specific DNA methylase [Bacillus clausii KSM-K16]
Length = 183
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 95/191 (49%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+AR +L + G RP + VK A F+I+ G+ LDLY+G+G+
Sbjct: 1 MRVIAGEARGLQLKAVPGKTTRPTTDKVKEAMFNIIGP------YFDGGKALDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ + ++ + NL TG+ D + ++ R ++ RA + VGK
Sbjct: 55 LGIEALSRGMESCIFVDQNKQAIATIH-ANLSRTGYTDKAEVY--RNDSL--RALKAVGK 109
Query: 229 -DGPFDYMSVTPPYTAV----------DYE--------VVEYPLRTDMLDTCGCLVKIKD 269
D F+ + + PPY DY V E L + DT G L+K ++
Sbjct: 110 RDVAFELILLDPPYAKQQIATIFGLIDDYHLLAPAGVTVCETALHIQLPDTAGPLIKERE 169
Query: 270 RRFGRTHLAIY 280
+G T L +Y
Sbjct: 170 ECYGDTKLTVY 180
>gi|323691872|ref|ZP_08106126.1| RsmD family RNA methyltransferase [Clostridium symbiosum WAL-14673]
gi|355627815|ref|ZP_09049446.1| RsmD family RNA methyltransferase [Clostridium sp. 7_3_54FAA]
gi|323504079|gb|EGB19887.1| RsmD family RNA methyltransferase [Clostridium symbiosum WAL-14673]
gi|354820140|gb|EHF04566.1| RsmD family RNA methyltransferase [Clostridium sp. 7_3_54FAA]
Length = 186
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 97/193 (50%), Gaps = 13/193 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRPGRWLDLYSGTG 167
++V+ G A+R L + +G D RP + +K F+++Q+ GC +LDL+SG+G
Sbjct: 1 MRVIAGSAKRLLLKTIEGKDTRPTTDRIKETLFNMMQNDVYGCT-------FLDLFSGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG VE +P + + NL+ T D +++ V T L+R E+
Sbjct: 54 AIGIEALSRGAEMAVMVEHNPR-AAQCIRENLKITHLEDKATVMNCDVITALKRLEE--- 109
Query: 228 KDGPFDYMSVTPPYTA-VDYEVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWAQ 286
+ FD + + PPY ++ V+EY + + ++ R G +L+ G + +
Sbjct: 110 RQLVFDIIFMDPPYNQLLEKAVLEYLAHSALTHADTLIIAEASRETGMDYLSELGFELVR 169
Query: 287 KKRKSEKKIPIVT 299
+K K +T
Sbjct: 170 EKEYKTNKHLFIT 182
>gi|225016608|ref|ZP_03705800.1| hypothetical protein CLOSTMETH_00515 [Clostridium methylpentosum
DSM 5476]
gi|224950572|gb|EEG31781.1| hypothetical protein CLOSTMETH_00515 [Clostridium methylpentosum
DSM 5476]
Length = 184
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 89/190 (46%), Gaps = 29/190 (15%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
R ++V+ G AR +KL + +G DVRP + VK F I+Q L LDL++G+
Sbjct: 4 RFMRVITGSARGRKLRTLEGQDVRPTTDRVKEGIFSIIQ------FDLPGANVLDLFAGS 57
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G +GIEA+SRG FV+ V NL+ G S + E+FL
Sbjct: 58 GQLGIEALSRGAKFCVFVD-SSRASHEVEKENLKTVGLFKQSRVVLSEAESFL------A 110
Query: 227 GKDGPFDYMSVTPPYT---------------AVDYEVV-EYPLRTDMLDTCGCLVKIKDR 270
G FD + + PPY A D V+ E+ L+ D+ + G LVK KD
Sbjct: 111 GTKEVFDIVLLDPPYNQNLIPPVLEMLQKRLAEDAIVLCEHELKEDLPEQIGKLVKHKDY 170
Query: 271 RFGRTHLAIY 280
++G+ + +Y
Sbjct: 171 KYGKIKVTVY 180
>gi|442804249|ref|YP_007372398.1| RNA methyltransferase, RsmD family [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740099|gb|AGC67788.1| RNA methyltransferase, RsmD family [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 173
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 28/179 (15%)
Query: 120 KLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCS 179
KL +PKG++ RP ++ VK + F+IL P S + LDL++GTG++ IEA+SRG
Sbjct: 2 KLKTPKGLNTRPTVDSVKESIFNILNPY--IPGS----KVLDLFAGTGALAIEALSRGAE 55
Query: 180 EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP 239
+FVE + N++ NL T FLD ++ +V FL +F ++ FD + + P
Sbjct: 56 LAYFVE-ENRNCCNIIRENLAHTKFLDKGVVYCRKVSNFL---REFNPENIKFDIIFMDP 111
Query: 240 PYT-AVDYEVVEYPLRTDML-----------------DTCGCLVKIKDRRFGRTHLAIY 280
PY+ E ++ + D++ D+ G L KI+ + +G T ++ +
Sbjct: 112 PYSRNFIQETLQLLMENDIINDKGIVVCEHHRNEMPSDSIGNLRKIRVKNYGDTRVSFF 170
>gi|255281786|ref|ZP_05346341.1| RNA methyltransferase, RsmD family [Bryantella formatexigens DSM
14469]
gi|255267853|gb|EET61058.1| RNA methyltransferase, RsmD family [Marvinbryantia formatexigens
DSM 14469]
Length = 188
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 82/153 (53%), Gaps = 14/153 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAG-GCPASLRPGRWLDLYSGTG 167
++V+ G ARR L + +GMD RP + +K F++L + GC R+LDL+SG+G
Sbjct: 1 MRVIAGTARRLALKTVEGMDTRPTTDRIKETLFNMLNAQIPGC-------RFLDLFSGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG FVE + + + NL +T D + + V + L + E
Sbjct: 54 AIGIEALSRGAESAVFVEHNRR-AAQCIQQNLSFTRLKDRAVLMQTDVCSALRKME---- 108
Query: 228 KDGPFDYMSVTPPY-TAVDYEVVEYPLRTDMLD 259
+ PFD + + PPY ++ EV+E + + D
Sbjct: 109 GEKPFDIIFMDPPYRQGLEREVLEMLADSSLAD 141
>gi|28210920|ref|NP_781864.1| methyltransferase [Clostridium tetani E88]
gi|28203359|gb|AAO35801.1| methyltransferase [Clostridium tetani E88]
Length = 185
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 79/137 (57%), Gaps = 18/137 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+L P+GM+ RP ++ VK F+++Q + + LDL++GTGS
Sbjct: 1 MRIIAGSARGRKILPPEGMNTRPTLDRVKENIFNMIQ------VHVYGAKTLDLFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD---VSSIHTVRVETFL-ERAEQ 224
+G+EA+SRG SE + ++ P S +L N++ GF D ++ + TFL E+ E+
Sbjct: 55 LGLEAVSRGASECYLIDRFPKTYS-LLETNVKNLGFEDKCKCLNMDSYDALTFLKEKGEE 113
Query: 225 FVGKDGPFDYMSVTPPY 241
FD + + PPY
Sbjct: 114 -------FDLIFIDPPY 123
>gi|333897205|ref|YP_004471079.1| methyltransferase [Thermoanaerobacterium xylanolyticum LX-11]
gi|333112470|gb|AEF17407.1| methyltransferase [Thermoanaerobacterium xylanolyticum LX-11]
Length = 192
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 97/192 (50%), Gaps = 32/192 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ +KL P G +RP ++VK + F+I+ A + +LDL+SGTGS
Sbjct: 1 MRVISGMAKGRKLKCPPGRAIRPTSDMVKESLFNIIS------ADIYDSIFLDLFSGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV--LIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
+GIEA+SRG + +FVE V +N+ + N++ G +D + I + L + F
Sbjct: 55 IGIEALSRGANICYFVEK---VYNNIKYINDNVKLLGSIDSAVILHMDA---LHALDYFN 108
Query: 227 GKDGPFDYMSVTPPYTAVDY-----EVVEYPL------------RTDMLDT-CGCLVKIK 268
+ FD++ + PPY Y ++ EY L + D L+ G L K +
Sbjct: 109 KNNIKFDFIYIDPPYYNNLYVEPLNKISEYELLNTDGYAIVEHHKNDFLEERYGSLQKFR 168
Query: 269 DRRFGRTHLAIY 280
+++G T L +
Sbjct: 169 MKKYGETILTFF 180
>gi|289422316|ref|ZP_06424166.1| RNA methyltransferase, RsmD family [Peptostreptococcus anaerobius
653-L]
gi|289157261|gb|EFD05876.1| RNA methyltransferase, RsmD family [Peptostreptococcus anaerobius
653-L]
Length = 186
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 27/190 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR KL +P+ D+RP + VK + F+++ + LDL+SG+G+
Sbjct: 1 MRVISGSARGLKLNTPEDYDIRPTTDRVKESMFNVIS------PYVYDAEVLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG S V+F + DP + V N+ T F + TV + +L+ K
Sbjct: 55 LGIEALSRGASHVYFCDKDPKSIG-VTKSNISKTKF---EARSTVILGDYLKAISNISSK 110
Query: 229 DGPFDYMSVTPPYTAVDY-EVVEYPLRTDMLDTCGCLVK----------------IKDRR 271
D + + PPY + EV++ + +L+ G LV IK+++
Sbjct: 111 KEKMDIIFIDPPYYKGLFGEVLKEIVDQGILEEDGILVVEHDYQVAIEEVDGLNIIKNKK 170
Query: 272 FGRTHLAIYG 281
+G+T + IYG
Sbjct: 171 YGKTAVTIYG 180
>gi|163797847|ref|ZP_02191792.1| putative methyltransferase [alpha proteobacterium BAL199]
gi|159176891|gb|EDP61458.1| putative methyltransferase [alpha proteobacterium BAL199]
Length = 187
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 20/156 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R +L++P G+++RP E + A F IL G P +LR R LDL+SGTG+
Sbjct: 1 MRIVAGKHRGARLVAPDGLEIRPTSERAREALFSILDG-GRFPLTLRGARVLDLFSGTGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
+G+EA+SRG ++V FVE ++ + I L G + R F+ER +
Sbjct: 60 LGLEALSRGAAQVVFVESGAAALAALRANIATLRAAGIAQIREADATR---FIERTPE-- 114
Query: 227 GKDGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCG 262
P D + + PPY + L + LDT G
Sbjct: 115 ----PVDLVLMDPPYGS--------GLWVEALDTIG 138
>gi|291544856|emb|CBL17965.1| RNA methyltransferase, RsmD family [Ruminococcus champanellensis
18P13]
Length = 180
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 73/133 (54%), Gaps = 13/133 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR ++L + +GMDVRP + VK A F +Q L + LDL++G+G
Sbjct: 1 MRVITGSARGRRLRTLEGMDVRPTTDKVKEAMFSAIQ------FQLPGAQVLDLFAGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FV+ ++ V+ NLE TGF DVS++ FL +Q
Sbjct: 55 LGIEALSRGAAHGVFVDQSSRSIA-VVRENLETTGFTDVSAVVLKSQMDFLRTTDQ---- 109
Query: 229 DGPFDYMSVTPPY 241
FD + PPY
Sbjct: 110 --RFDIAFLDPPY 120
>gi|348026193|ref|YP_004765998.1| RNA methyltransferase [Megasphaera elsdenii DSM 20460]
gi|341822247|emb|CCC73171.1| RNA methyltransferase [Megasphaera elsdenii DSM 20460]
Length = 185
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 73/134 (54%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR + L SPKGM RP ++ + + F+IL+S+GG LR LD+++GTG+
Sbjct: 1 MRIISGSARGRVLKSPKGMLTRPTLDRTRESLFNILESSGG----LRGAAVLDIFAGTGA 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + F++ ++ N GF D + + L R + G+
Sbjct: 57 LGLEALSRGAASAVFID---HYTQQLIRQNAALCGFADCVEVLRLNSAKALARLQ---GR 110
Query: 229 DGPFDYMSVTPPYT 242
FDY+ PPY
Sbjct: 111 --KFDYIFADPPYN 122
>gi|326201983|ref|ZP_08191853.1| methyltransferase [Clostridium papyrosolvens DSM 2782]
gi|325987778|gb|EGD48604.1| methyltransferase [Clostridium papyrosolvens DSM 2782]
Length = 184
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 91/192 (47%), Gaps = 30/192 (15%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGT 166
+L+V+ G A+ KL + +GM+ RP + VK F+I+ AS PG LDL++G+
Sbjct: 1 MLRVISGSAKGLKLSTLEGMNTRPTTDRVKENLFNII-------ASYIPGSNILDLFAGS 53
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
GS+GIEA+SRG F + + ++ NLE T +D S I + L++ Q
Sbjct: 54 GSLGIEALSRGAESAVFCDQSEQ-STEIITRNLEHTKLMDKSEIFLGEAQIILKKLSQLS 112
Query: 227 GKDGPFDYMSVTPPY--------------TAVDYEVVEYPLRTDMLDT----CGCLVKIK 268
K FD + + PPY + V E V + TD+ D G L +
Sbjct: 113 KK---FDIIFLDPPYKKEIVPGILQNLENSGVLDEKVLISVETDIEDQLPQEIGTLCVSR 169
Query: 269 DRRFGRTHLAIY 280
+ +G+T L Y
Sbjct: 170 QQVYGKTKLTFY 181
>gi|118580607|ref|YP_901857.1| putative methyltransferase [Pelobacter propionicus DSM 2379]
gi|118503317|gb|ABK99799.1| putative methyltransferase [Pelobacter propionicus DSM 2379]
Length = 187
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 90/191 (47%), Gaps = 28/191 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +L +P+GM RP + V+ A F I+QS L R LD+ +GTG
Sbjct: 1 MRVIAGSARGTRLAAPRGMRTRPTADRVREALFSIIQS----RYELDGARVLDMCAGTGG 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV-G 227
+GIEA+SRG S FVE D + L NL T + +++ +E L RA + G
Sbjct: 57 LGIEALSRGASTCCFVEKDREAL-KCLRQNLLATRCAERATL----LEMDLLRALPLLAG 111
Query: 228 KDGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKD 269
+ F + PPY + Y + E R + + GCLV+
Sbjct: 112 RGSRFSIIFFDPPYASELYTPVMRSLSSLELLEPEGLFIAESAARAILPEREGCLVRSDR 171
Query: 270 RRFGRTHLAIY 280
R +G T LA+Y
Sbjct: 172 RVYGDTALALY 182
>gi|210615577|ref|ZP_03290675.1| hypothetical protein CLONEX_02893 [Clostridium nexile DSM 1787]
gi|210150244|gb|EEA81253.1| hypothetical protein CLONEX_02893 [Clostridium nexile DSM 1787]
Length = 196
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 84/147 (57%), Gaps = 16/147 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL--QSAGGCPASLRPGRWLDLYSG 165
+++V+ G A+R +L + G+D RP + +K F+++ + A C +LDL+SG
Sbjct: 12 IMRVIAGSAKRLQLKTIDGLDTRPTTDRIKETLFNMISHEIADSC--------FLDLFSG 63
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+G++GIEA+SRG E FVE + ++ + NL +T S + + V + L+R E
Sbjct: 64 SGAIGIEALSRGAKEAVFVEQNRKAMACIR-ENLTFTKLAKQSVLLEMDVLSALKRLE-- 120
Query: 226 VGKDGPFDYMSVTPPY-TAVDYEVVEY 251
GK FDY+ + PPY ++ +V+EY
Sbjct: 121 -GK-YQFDYIFMDPPYRKMLEKQVLEY 145
>gi|404493263|ref|YP_006717369.1| DNA methyltransferase [Pelobacter carbinolicus DSM 2380]
gi|77545321|gb|ABA88883.1| DNA methyltransferase, putative [Pelobacter carbinolicus DSM 2380]
Length = 194
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 74/134 (55%), Gaps = 6/134 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ +KL KG ++RP + V+ A F LQS G + L + LDL++GTG+
Sbjct: 1 MRIISGSAKGRKLRQFKGQNIRPTTDRVREALFSSLQSRLGSFSEL---KVLDLFAGTGA 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG + V+ P V+ V+ N++ G D + + F+ + + K
Sbjct: 58 LSLEALSRGAAYAVLVDQSPNSVA-VIAENIKTCGMQDRTRLCRTSASIFVNQNQ--AAK 114
Query: 229 DGPFDYMSVTPPYT 242
D PFD + + PPY
Sbjct: 115 DAPFDLIFLDPPYN 128
>gi|153810847|ref|ZP_01963515.1| hypothetical protein RUMOBE_01231 [Ruminococcus obeum ATCC 29174]
gi|149833243|gb|EDM88325.1| RNA methyltransferase, RsmD family [Ruminococcus obeum ATCC 29174]
Length = 184
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 97/189 (51%), Gaps = 13/189 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKARR L + GM+ RP + +K F+ILQ + R+LDL+SG+G
Sbjct: 1 MRVIAGKARRLALKTVPGMETRPTTDRIKETLFNILQP------EIPDCRFLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FVE +P + + NL +T + + + V L+ G+
Sbjct: 55 IGIEALSRGAESAVFVEKNPKACA-CIRENLTFTKLAEHGKLLNMDV---LQALRSLEGE 110
Query: 229 DGPFDYMSVTPPYTA-VDYEVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWAQK 287
+ FD + + PPY ++ +V+EY + + +T +V D +++ G + ++
Sbjct: 111 EA-FDCIFMDPPYNKDLERQVLEYLKDSSLANTDTLIVTEADLHTDFSYVEELGYELSRS 169
Query: 288 KR-KSEKKI 295
K K+ K I
Sbjct: 170 KEYKTNKHI 178
>gi|153954010|ref|YP_001394775.1| hypothetical protein CKL_1385 [Clostridium kluyveri DSM 555]
gi|219854624|ref|YP_002471746.1| hypothetical protein CKR_1281 [Clostridium kluyveri NBRC 12016]
gi|146346891|gb|EDK33427.1| Hypothetical protein CKL_1385 [Clostridium kluyveri DSM 555]
gi|219568348|dbj|BAH06332.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 186
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 75/136 (55%), Gaps = 15/136 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQS--AGGCPASLRPGRWLDLYSG 165
++V+GG AR +KL+SPKG + RP ++ VK A F+I+Q+ G C LD+++G
Sbjct: 1 MRVIGGLARGRKLMSPKGYNTTRPTLDRVKEAMFNIIQNRIYGSC--------VLDIFAG 52
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
TGS+G+EA SRG + V+ D S L N+E GF ++ FL + E+
Sbjct: 53 TGSLGLEAASRGAKKCLLVDKDKDTFS-FLKQNVENLGFSEICETINRDSYEFLRQIER- 110
Query: 226 VGKDGPFDYMSVTPPY 241
K FD + V PPY
Sbjct: 111 --KTEIFDIIFVDPPY 124
>gi|429759356|ref|ZP_19291855.1| RNA methyltransferase, RsmD family [Veillonella atypica KON]
gi|429179632|gb|EKY20871.1| RNA methyltransferase, RsmD family [Veillonella atypica KON]
Length = 183
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 14/158 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG A+ + +PKGMD RP ++ V+ + F++L G + R LDL+SGTG+
Sbjct: 1 MRIIGGTAKGHTIKAPKGMDTRPTLDRVRESIFNVLAHRG-----IFGTRILDLFSGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
V IEA+SRG V+ + ++ N E LD I + L + + F+G
Sbjct: 56 VAIEALSRGAESAIAVD---YRTGKLIRENAEHCRVLDRIQI----IPKKLSQLKHFIG- 107
Query: 229 DGPFDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGCLV 265
D FDY+ PPY E +++ + D L G LV
Sbjct: 108 DQQFDYIFSDPPYENGFIQETIDFVVAHDALADDGVLV 145
>gi|331091196|ref|ZP_08340037.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
2_1_46FAA]
gi|330404643|gb|EGG84182.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
2_1_46FAA]
Length = 189
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 92/176 (52%), Gaps = 16/176 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG A+R +L + G++ RP + +K F+++ L +LDL+SG+G
Sbjct: 1 MRVIGGSAKRLQLKTLDGLETRPTTDRIKETLFNMI------SPYLCDCMFLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E FVE +P + + NL +T + V T L+R E
Sbjct: 55 IGIEALSRGAKEAVFVENNPKAMQYIK-ENLAFTKLDKKAVTMQTDVITALKRLE----G 109
Query: 229 DGPFDYMSVTPPYT-AVDYEVVEYPLRTDML--DTCGCLVKIKDRRFGRTHLAIYG 281
FDY+ + PPY ++ +V+EY +D++ DT + K+ F T+L +G
Sbjct: 110 TTQFDYIFMDPPYAKGLEEQVLEYLAESDLVNEDTVIIVEAAKETEF--TYLERFG 163
>gi|160933338|ref|ZP_02080726.1| hypothetical protein CLOLEP_02183 [Clostridium leptum DSM 753]
gi|156867215|gb|EDO60587.1| RNA methyltransferase, RsmD family [Clostridium leptum DSM 753]
Length = 210
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 29/191 (15%)
Query: 106 HRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSG 165
+ ++V+ G AR ++L + +G +VRP E +K A F I+Q + R+LDL++G
Sbjct: 25 EKAMRVITGSARGRRLQTLEGQEVRPTPERIKEAVFSIIQ------FQIEGRRFLDLFAG 78
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+G +GIEA+SRG E FV+ V ++ NLE TG + + FL +
Sbjct: 79 SGQMGIEALSRGAREAVFVDSRKDSV-QIIRENLEKTGLGQQGRVVNMDSLAFLSQP--- 134
Query: 226 VGKDGPFDYMSVTPPYTAVDYE----------------VVEYPLRTDMLDTCGCLVKIKD 269
+G FD + PPY E + E+P ++ G VK +D
Sbjct: 135 ---NGKFDLAFLDPPYRTGLLEKALEMTSAVVKPGGVILCEHPADEELPAQAGDFVKRRD 191
Query: 270 RRFGRTHLAIY 280
R G+ +++Y
Sbjct: 192 YRHGKILISLY 202
>gi|303229896|ref|ZP_07316672.1| RNA methyltransferase, RsmD family [Veillonella atypica
ACS-134-V-Col7a]
gi|302515452|gb|EFL57418.1| RNA methyltransferase, RsmD family [Veillonella atypica
ACS-134-V-Col7a]
Length = 183
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 14/158 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG A+ + +PKGMD RP ++ V+ + F++L G + R LDL+SGTG+
Sbjct: 1 MRIIGGTAKGHTIKAPKGMDTRPTLDRVRESIFNVLAHRG-----IYGTRVLDLFSGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
V IEA+SRG V+ + ++ N E LD I + L + + F+G
Sbjct: 56 VAIEALSRGAESAIAVD---YRTGKLIRENAEHCRVLDRIQI----IPKKLSQLKHFIG- 107
Query: 229 DGPFDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGCLV 265
D FDY+ PPY E +++ + D L G LV
Sbjct: 108 DQQFDYIFSDPPYENGFIQETIDFVVAHDALADDGVLV 145
>gi|385799672|ref|YP_005836076.1| methyltransferase [Halanaerobium praevalens DSM 2228]
gi|309389036|gb|ADO76916.1| methyltransferase [Halanaerobium praevalens DSM 2228]
Length = 179
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 95/189 (50%), Gaps = 30/189 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKA KL S KG DVRP ++ VK + F+I+ A P LDL+SG G+
Sbjct: 1 MRIIAGKAGGLKLKSLKGRDVRPTLDRVKESMFNII--AFYLP----EAEVLDLFSGFGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SR + FVE+ + N++ NL L+ + ++ V ++L+ + +
Sbjct: 55 LGIEALSRRAKKADFVELKQAHL-NIIEENLNKAKLLEKADLYQQDVYSYLKNSNK---- 109
Query: 229 DGPFDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLVK----------------IKDRR 271
+D + + PPY + E +E ++ ++L G ++ IK++
Sbjct: 110 --KYDLIFMDPPYQKKMTAEAIELIIKNNLLKDKGLIISEKSASEKTNEFAELDIIKNKI 167
Query: 272 FGRTHLAIY 280
+G + L IY
Sbjct: 168 YGNSLLTIY 176
>gi|334340289|ref|YP_004545269.1| methyltransferase [Desulfotomaculum ruminis DSM 2154]
gi|334091643|gb|AEG59983.1| methyltransferase [Desulfotomaculum ruminis DSM 2154]
Length = 184
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 87/168 (51%), Gaps = 21/168 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG R + L SPKGM RP + V+ A F+IL + +LDL+SGTG+
Sbjct: 1 MRIIGGLVRGRNLKSPKGMSTRPTSDRVREALFNILSP------RVSGSYFLDLFSGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
V IEA+SRG VE D ++SN+ + NL T +V ++ T R + L
Sbjct: 55 VAIEALSRGAERAVMVEKDRGTAGIILSNLKLCNL--TEKAEVLNLDTNRAISVL----- 107
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEV--VEYPLRTDMLDTCGCLVKIKDR 270
+ PFD + + PPY ++EV +E R D+L G LV D+
Sbjct: 108 -AARKVPFDLIFIDPPYKK-NFEVPTMEQVQRFDLLVDNGILVVESDK 153
>gi|167745657|ref|ZP_02417784.1| hypothetical protein ANACAC_00349 [Anaerostipes caccae DSM 14662]
gi|167654969|gb|EDR99098.1| RNA methyltransferase, RsmD family [Anaerostipes caccae DSM 14662]
Length = 187
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 76/135 (56%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR +L + +GMD RP + +K F+++Q + +LDL++G+G+
Sbjct: 1 MRVISGKARSLRLKTVEGMDTRPTQDRIKETLFNMIQH------EIAGAEFLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRGC FVE + + + NL T ++ + + +ET + A + +G
Sbjct: 55 IGIEALSRGCKHAVFVEKNKKAAACIR-DNLIHTKLINDAQV----LETDVISALRKLGS 109
Query: 229 DG-PFDYMSVTPPYT 242
+ FDY+ + PPY
Sbjct: 110 ESRKFDYIFMDPPYN 124
>gi|303232059|ref|ZP_07318762.1| RNA methyltransferase, RsmD family [Veillonella atypica
ACS-049-V-Sch6]
gi|401680132|ref|ZP_10812056.1| RNA methyltransferase, RsmD family [Veillonella sp. ACP1]
gi|302513165|gb|EFL55204.1| RNA methyltransferase, RsmD family [Veillonella atypica
ACS-049-V-Sch6]
gi|400219259|gb|EJO50130.1| RNA methyltransferase, RsmD family [Veillonella sp. ACP1]
Length = 183
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 14/158 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG A+ + +PKGMD RP ++ V+ + F++L G + R LDL+SGTG+
Sbjct: 1 MRIIGGTAKGHTIKAPKGMDTRPTLDRVRESIFNVLAHRG-----IFGTRVLDLFSGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
V IEA+SRG V+ + ++ N E LD I + L + + F+G
Sbjct: 56 VAIEALSRGAESAIAVD---YRTGKLIRENAEHCRVLDRIQI----IPKKLSQLKHFIG- 107
Query: 229 DGPFDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGCLV 265
D FDY+ PPY E +++ + D L G LV
Sbjct: 108 DQQFDYIFSDPPYENGFIQETIDFVVAHDALADDGVLV 145
>gi|376261484|ref|YP_005148204.1| RsmD family RNA methyltransferase [Clostridium sp. BNL1100]
gi|373945478|gb|AEY66399.1| RNA methyltransferase, RsmD family [Clostridium sp. BNL1100]
Length = 184
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 92/192 (47%), Gaps = 30/192 (15%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGT 166
+L+V+ G A+ KL + +GM+ RP + VK F+I+ A PG LDL++GT
Sbjct: 1 MLRVISGSAKGLKLFTLEGMNTRPTTDRVKENLFNII-------APYMPGSNILDLFAGT 53
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
GS+GIEA+SRG + F ++ ++++ NL+ T +D S + + L++ Q
Sbjct: 54 GSLGIEALSRGANSAVFCDLSEQ-SADIITRNLQHTKLIDKSEVFLGEAQIILKKLSQLS 112
Query: 227 GKDGPFDYMSVTPPYT--------------AVDYEVVEYPLRTDMLDT----CGCLVKIK 268
K FD + + PPY V E V + TD+ D G L +
Sbjct: 113 KK---FDIIFLDPPYKKEIVPGILQDLENYGVLDEKVLISVETDIEDQLPKEIGTLCVSR 169
Query: 269 DRRFGRTHLAIY 280
+ +G+T L Y
Sbjct: 170 QQIYGKTKLTFY 181
>gi|404496621|ref|YP_006720727.1| DNA methyltransferase [Geobacter metallireducens GS-15]
gi|418066708|ref|ZP_12704067.1| methyltransferase [Geobacter metallireducens RCH3]
gi|78194224|gb|ABB31991.1| DNA methyltransferase, putative [Geobacter metallireducens GS-15]
gi|373560021|gb|EHP86297.1| methyltransferase [Geobacter metallireducens RCH3]
Length = 188
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 73/133 (54%), Gaps = 7/133 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG AR ++L +P+G VRP + VK A F IL S G +L R LD+++GTG+
Sbjct: 1 MRVIGGTARGRRLAAPRGERVRPTADRVKEALFSILTSLLG---NLEGLRVLDVFAGTGN 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRGCSE FV+ + ++ NL D + + L+ + +
Sbjct: 58 LGIEALSRGCSEAIFVDSHRESAA-IIRQNLTQLNLTDRGRVIVKDAASALQCLNENI-- 114
Query: 229 DGPFDYMSVTPPY 241
PF + + PPY
Sbjct: 115 -APFTIIFLDPPY 126
>gi|153853066|ref|ZP_01994475.1| hypothetical protein DORLON_00460 [Dorea longicatena DSM 13814]
gi|149753852|gb|EDM63783.1| RNA methyltransferase, RsmD family [Dorea longicatena DSM 13814]
Length = 189
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 12/158 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR +L + +GMD RP + +K F+++ L +LDL++G+G
Sbjct: 1 MRVIAGSARRTQLKTLEGMDTRPTTDRIKETLFNMI------APYLYDSIFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E FVE +P ++ V NL+ T F + V T L + E
Sbjct: 55 IGIEALSRGAMEAVFVEKNPKAMACVK-ENLQKTHFERKGMTMQMDVMTALYKLE----G 109
Query: 229 DGPFDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLV 265
+ FDY+ + PPY ++ V+ Y + +L G ++
Sbjct: 110 EKQFDYIFMDPPYNHELEKSVLTYLAESSLLAEEGIII 147
>gi|297617081|ref|YP_003702240.1| methyltransferase [Syntrophothermus lipocalidus DSM 12680]
gi|297144918|gb|ADI01675.1| methyltransferase [Syntrophothermus lipocalidus DSM 12680]
Length = 190
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 75/134 (55%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR KKL +P G RP+ + +K A F++L GG + R LD+++G+G
Sbjct: 1 MRVISGTARGKKLKAPPGFITRPLTDRIKEALFNVL---GG---EIEDARLLDVFAGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ-FVG 227
VGIEA+SRG S V FVE P + + NL+ F S + ++ F RA + VG
Sbjct: 55 VGIEALSRGASYVVFVEKHPAAIRTIY-ANLDGCRF--ASGFEVLGMDVF--RALRILVG 109
Query: 228 KDGPFDYMSVTPPY 241
+ FD + V PP+
Sbjct: 110 RGKVFDVIYVDPPF 123
>gi|302670818|ref|YP_003830778.1| hypothetical protein bpr_I1459 [Butyrivibrio proteoclasticus B316]
gi|302395291|gb|ADL34196.1| hypothetical protein bpr_I1459 [Butyrivibrio proteoclasticus B316]
Length = 183
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 76/139 (54%), Gaps = 12/139 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR KL++P+G D RP + +K F+++Q P S+ ++DLY+G+G
Sbjct: 1 MRVIAGSARRLKLVTPEGNDTRPTQDRIKETLFNMIQLQ--VPGSV----FIDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + +F++ + ++ NL+ T F DVS++ V L +
Sbjct: 55 IGIEALSRGAKKAYFID-NAMSSYKCIMTNLKTTHFEDVSTVLKQDVVIGLRNIHE---- 109
Query: 229 DGPFDYMSVTPPYTAVDYE 247
D + + PPY YE
Sbjct: 110 -EEADIIFIDPPYHEDLYE 127
>gi|390934839|ref|YP_006392344.1| methyltransferase [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389570340|gb|AFK86745.1| methyltransferase [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 194
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 93/192 (48%), Gaps = 32/192 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ +KL P G +RP ++VK + F+I+ + +LDL+SGTGS
Sbjct: 1 MRVISGIAKGRKLKCPPGKAIRPTSDMVKESLFNII------GIDIYEATFLDLFSGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV--LIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
VGIEA+SRG + +FVE V +N+ + N++ G +D + + + L + F
Sbjct: 55 VGIEALSRGANICYFVEK---VYNNIKYIYDNVKLLGSIDNAVVLHMDA---LHALDYFS 108
Query: 227 GKDGPFDYMSVTPPY------------------TAVDYEVVEYPLRTDMLDTCGCLVKIK 268
+ FD + + PPY A Y +VE+ + D G L K +
Sbjct: 109 KNNIKFDIIYIDPPYYNNLYVEPLNKISEYELLNADGYAIVEHHKNDFLEDKYGKLQKFR 168
Query: 269 DRRFGRTHLAIY 280
+++G T L +
Sbjct: 169 MKKYGETILTFF 180
>gi|355677721|ref|ZP_09060488.1| RsmD family RNA methyltransferase [Clostridium citroniae WAL-17108]
gi|354812807|gb|EHE97421.1| RsmD family RNA methyltransferase [Clostridium citroniae WAL-17108]
Length = 185
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQ-SAGGCPASLRPGRWLDLYSGTG 167
++V+ G ARR L + +GMD RP + K F++LQ G C ++LDL+SG+G
Sbjct: 1 MRVIAGSARRLLLKTVEGMDTRPTTDRTKETLFNMLQPQIGDC-------KFLDLFSGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG + +E +P + + NLE T D + + V L++ E G
Sbjct: 54 AIGIEALSRGAAMAVMIENNPKAIE-CIRENLERTKLEDRALVMNCDVLAGLKKLE---G 109
Query: 228 KDGPFDYMSVTPPY 241
++ FD + + PPY
Sbjct: 110 RNYKFDMVFMDPPY 123
>gi|160947552|ref|ZP_02094719.1| hypothetical protein PEPMIC_01487 [Parvimonas micra ATCC 33270]
gi|158446686|gb|EDP23681.1| RNA methyltransferase, RsmD family [Parvimonas micra ATCC 33270]
Length = 180
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 13/145 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R KLLSP VRP + +K + F+IL G LDL+ G+G+
Sbjct: 1 MRIISGKKRGLKLLSPMDYSVRPTTDKIKESIFNILFEIGESSVV------LDLFCGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG +V+F + + + NLE G L S I + +++ F
Sbjct: 55 IGIEFLSRGAEKVYFCDFSDDSIK-ITKRNLENAGLLTKSIIMK---KNYMDCLNYFYSN 110
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYPL 253
D FDY+ + PPY YE +E L
Sbjct: 111 DLKFDYIFLDPPYK---YEYIEKTL 132
>gi|317472740|ref|ZP_07932053.1| RsmD family RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
gi|316899766|gb|EFV21767.1| RsmD family RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
Length = 187
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 76/135 (56%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR +L + +GMD RP + +K F+++Q + +LDL++G+G+
Sbjct: 1 MRVISGKARSLRLKTVEGMDTRPTQDRIKETLFNMIQH------EIAGAEFLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRGC FVE + + + NL T ++ + + +ET + A + +G
Sbjct: 55 IGIEALSRGCKHAVFVEKNKKAAACIRY-NLIHTKLINDAQV----LETDVISALRKLGA 109
Query: 229 DG-PFDYMSVTPPYT 242
+ FDY+ + PPY
Sbjct: 110 ESRKFDYIFMDPPYN 124
>gi|225568062|ref|ZP_03777087.1| hypothetical protein CLOHYLEM_04135 [Clostridium hylemonae DSM
15053]
gi|225163158|gb|EEG75777.1| hypothetical protein CLOHYLEM_04135 [Clostridium hylemonae DSM
15053]
Length = 189
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 12/158 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+R +L + +GMD RP + +K F+++ L +LDL++G+G
Sbjct: 1 MRVIAGSAKRLQLKTLEGMDTRPTTDRIKETLFNMISP------YLYDCIFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E FVE +P ++ V NL T ++ + V T L + E
Sbjct: 55 IGIEALSRGAMEAVFVEKNPKAMACVK-ENLRRTKLSHRAATMSTDVMTALYKLEG---- 109
Query: 229 DGPFDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGCLV 265
D FD++ + PPY ++ +V+EY +++L G ++
Sbjct: 110 DKQFDFIFMDPPYGLQLERKVLEYLAESELLADEGVII 147
>gi|331004263|ref|ZP_08327741.1| RsmD family RNA methyltransferase [Lachnospiraceae oral taxon 107
str. F0167]
gi|330411428|gb|EGG90840.1| RsmD family RNA methyltransferase [Lachnospiraceae oral taxon 107
str. F0167]
Length = 184
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 96/186 (51%), Gaps = 14/186 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR L +PKG RP + +K F+++ + + +LDL++G+G
Sbjct: 1 MRVISGTARSLILKTPKGTSTRPTTDKIKETLFNMISN------EIYDSVFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E +F ++D + + NLE T + +++ E LE+ + +GK
Sbjct: 55 IGIEALSRGAREAYFCDIDREAIQCIR-QNLEHTKLANKATVLKGSFEANLEKLKS-LGK 112
Query: 229 DGPFDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWAQK 287
FD + + PPY + + ++ + + ++D ++ ++ + THL+ DW K
Sbjct: 113 --KFDIVFIDPPYQKGFEDKCLDILINSALIDEYTLVIIEEEFKTDTTHLS---KDWNIK 167
Query: 288 KRKSEK 293
K K K
Sbjct: 168 KVKEYK 173
>gi|269121048|ref|YP_003309225.1| methyltransferase [Sebaldella termitidis ATCC 33386]
gi|268614926|gb|ACZ09294.1| methyltransferase [Sebaldella termitidis ATCC 33386]
Length = 183
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 16/136 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + KKL + +G + RP +E VK A F I+ + +LDLY+GTGS
Sbjct: 1 MRVVAGSVKNKKLKTKEGRETRPTLERVKEAIFSIISD------EITDSSFLDLYAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH---TVRVETFLERAEQF 225
+ IEA+SRG +E D + ++I N+ GF ++S + +R L+R +
Sbjct: 55 IAIEALSRGARRAILIEQDKEALR-IIIENINNCGFENISRAYKNDVIRALEILQRKGEL 113
Query: 226 VGKDGPFDYMSVTPPY 241
FD + + PPY
Sbjct: 114 ------FDIIFLDPPY 123
>gi|440225672|ref|YP_007332763.1| RNA methyltransferase, RsmD family [Rhizobium tropici CIAT 899]
gi|440037183|gb|AGB70217.1| RNA methyltransferase, RsmD family [Rhizobium tropici CIAT 899]
Length = 188
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 72/135 (53%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + L +PK D+RP + + + F+IL A P ++ R +D+++GTG+
Sbjct: 1 MRVVGGEFRGRSLATPKSNDIRPTADRTRESLFNILSHA--YPEAIDGTRMMDVFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA SRGC V FVE S+V L W +D +H R A V
Sbjct: 59 VGLEAASRGCRHVLFVE------SSVEGRGLLWEN-IDALGLHG-RTRMLRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPY 241
G PFD++ PPY
Sbjct: 111 GNLEPFDFLFADPPY 125
>gi|225572198|ref|ZP_03781062.1| hypothetical protein RUMHYD_00492 [Blautia hydrogenotrophica DSM
10507]
gi|225040370|gb|EEG50616.1| RNA methyltransferase, RsmD family [Blautia hydrogenotrophica DSM
10507]
Length = 183
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 75/133 (56%), Gaps = 11/133 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKARR L + G++ RP + +K F+ILQ L R+LDL+SG+G+
Sbjct: 1 MRVIAGKARRLPLKTVPGLETRPTTDRIKETLFNILQP------KLLDSRFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + F+E P V + NL +T + + + ++ + F + Q G
Sbjct: 55 IGIEALSRGAALAVFIEKSPKAV-GCIKENLAFTRLQEQARV--IKTDVF-QGLRQLEG- 109
Query: 229 DGPFDYMSVTPPY 241
+ PFD + + PPY
Sbjct: 110 EKPFDCIFMDPPY 122
>gi|402312210|ref|ZP_10831140.1| RNA methyltransferase, RsmD family [Lachnospiraceae bacterium ICM7]
gi|400370871|gb|EJP23853.1| RNA methyltransferase, RsmD family [Lachnospiraceae bacterium ICM7]
Length = 184
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 90/171 (52%), Gaps = 11/171 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR L +PKG RP + +K F+++ + L +LDL++G+G
Sbjct: 1 MRVISGTARSLILKTPKGTSTRPTTDKIKETLFNMISN------ELYNATFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E +F ++D + + NLE T +D ++I E LE+ + GK
Sbjct: 55 IGIEALSRGAKEAYFCDIDREAIRCIR-ENLEHTKLIDKATILKGSFEANLEKIKTH-GK 112
Query: 229 DGPFDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLA 278
FD + + PPY + + ++ + + ++D ++ ++ + THL+
Sbjct: 113 --KFDIVFIDPPYQKGFEDKCLDILINSTLIDEHTLVIIEEEFKTDTTHLS 161
>gi|347542366|ref|YP_004857002.1| methyltransferase [Candidatus Arthromitus sp. SFB-rat-Yit]
gi|346985401|dbj|BAK81076.1| methyltransferase [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 189
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 80/139 (57%), Gaps = 12/139 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++++ GKA+ KKL+SP G DV RP ++ VK + F+I+Q+ R LDL++GTG
Sbjct: 1 MRIITGKAKGKKLISPDGYDVTRPTLDRVKQSIFNIIQNELN-----RDSIVLDLFAGTG 55
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
S+G+E+ SRG +++ + + S L N++ TG D + ++ E F F G
Sbjct: 56 SLGLESASRGAKKIYLCDKNDVTFS-YLEQNIKNTGLSDCA--FAIKGE-FDVNLRSFKG 111
Query: 228 KDGPFDYMSVTPPYTAVDY 246
K+ FD + + PPY + DY
Sbjct: 112 KE-KFDLIFIDPPYNS-DY 128
>gi|227485070|ref|ZP_03915386.1| possible rRNA (guanine-N(2)-)-methyltransferase [Anaerococcus
lactolyticus ATCC 51172]
gi|227236903|gb|EEI86918.1| possible rRNA (guanine-N(2)-)-methyltransferase [Anaerococcus
lactolyticus ATCC 51172]
Length = 181
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 92/191 (48%), Gaps = 30/191 (15%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++V+ GK + LLSPK RP VK A FD+L R LDL+SGTG
Sbjct: 1 MMKVVAGKYKGYNLLSPKSKTSRPTDNKVKEAIFDMLYPYKNS------FRALDLFSGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+GIE +SRG EV+F E + + ++L NL+ +D ++ +++ F+ +
Sbjct: 55 QMGIEFLSRGADEVYFNEKN-YSNFSILNQNLDK---VDRQRVYASKMD-FIRCLKDLSE 109
Query: 228 KDGPFDYMSVTPPYTA--VDYEVVEYPLRTDMLDTCGCLVK----------------IKD 269
K FDY+ + PPY +D + + Y L D+L G ++ +KD
Sbjct: 110 KGLDFDYIFLDPPYETDFID-KALFYILEYDLLSEDGIVITESSKDIDFSDKYNLNILKD 168
Query: 270 RRFGRTHLAIY 280
+ +GR + Y
Sbjct: 169 KSYGRKFIKFY 179
>gi|429728032|ref|ZP_19262777.1| RNA methyltransferase, RsmD family [Peptostreptococcus anaerobius
VPI 4330]
gi|429150704|gb|EKX93601.1| RNA methyltransferase, RsmD family [Peptostreptococcus anaerobius
VPI 4330]
Length = 186
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 94/190 (49%), Gaps = 27/190 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR KL +P+ D+RP + VK + F+++ + LDL+SG+G+
Sbjct: 1 MRVISGSARGLKLNTPEDYDIRPTTDRVKESMFNVIS------PYVYDAEVLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG S V+F + DP + V N+ F + TV + +L+ K
Sbjct: 55 LGVEALSRGASHVYFCDKDPKSIG-VTKSNISKAKF---EARSTVILGDYLKAISNISSK 110
Query: 229 DGPFDYMSVTPPYTAVDY-EVVEYPLRTDMLDTCGCLVK----------------IKDRR 271
D + + PPY + EV++ + +L+ G LV IK+++
Sbjct: 111 KEKMDIIFIDPPYYKGLFGEVLKEIVDQGILEEDGILVVEHDYQVAIEEVDGLNIIKNKK 170
Query: 272 FGRTHLAIYG 281
+G+T + IYG
Sbjct: 171 YGKTAVTIYG 180
>gi|222085016|ref|YP_002543545.1| methylase [Agrobacterium radiobacter K84]
gi|398381192|ref|ZP_10539302.1| RNA methyltransferase, RsmD family [Rhizobium sp. AP16]
gi|221722464|gb|ACM25620.1| methylase protein [Agrobacterium radiobacter K84]
gi|397719497|gb|EJK80064.1| RNA methyltransferase, RsmD family [Rhizobium sp. AP16]
Length = 188
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 71/135 (52%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK D+RP + + + F+IL A P +L R +D+++GTG+
Sbjct: 1 MRIVGGEFRGRSLAVPKSNDIRPTADRTRESLFNILTHA--YPEALDGTRMMDIFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA SRGC V FVE S+V L W +D +H R A V
Sbjct: 59 VGLEAASRGCRHVLFVE------SSVEGRGLLWEN-IDALGLHG-RTRMMRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPY 241
G PFD++ PPY
Sbjct: 111 GNLEPFDFLFADPPY 125
>gi|295109966|emb|CBL23919.1| RNA methyltransferase, RsmD family [Ruminococcus obeum A2-162]
Length = 184
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 96/189 (50%), Gaps = 13/189 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L + GM+ RP + +K F+ILQ + R+LDL+SG+G
Sbjct: 1 MRVIAGTARRLNLKTVPGMETRPTTDRIKETLFNILQP------EMPECRFLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + F E +P S + NL +T + + + V L+ G+
Sbjct: 55 IGIEALSRGAAYAVFAEKNPKACS-CIRDNLSFTKLAEHGKLLNMDV---LQALRSLEGE 110
Query: 229 DGPFDYMSVTPPYTA-VDYEVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWAQ- 286
+ FD + + PPY ++ +V+EY + + D ++ D +++ G + A+
Sbjct: 111 EA-FDCIFMDPPYNHDLERQVLEYLSDSSLADDHTLIITEADLHTDFSYVTDLGYELARS 169
Query: 287 KKRKSEKKI 295
K+ K+ K +
Sbjct: 170 KEYKTNKHV 178
>gi|197122519|ref|YP_002134470.1| methyltransferase [Anaeromyxobacter sp. K]
gi|196172368|gb|ACG73341.1| methyltransferase [Anaeromyxobacter sp. K]
Length = 179
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 84/191 (43%), Gaps = 27/191 (14%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G AR ++L PKG RP + V+GA F++L G LDLY+GTG
Sbjct: 1 MTRIIAGTARGRRLAVPKGQGTRPTSDKVRGAVFNLLGQ------FFEGGDVLDLYAGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++ +EA+SRGC+ VE D + +L N E G+ D + RV L R
Sbjct: 55 ALALEALSRGCARAVCVEAD-RPTAELLRRNAETCGWADRVEVVRGRVPEALARLAP--- 110
Query: 228 KDGPFDYMSVTPPYT---------------AVDYEVVEYPLRTDMLDTCGCLVKIKDRRF 272
G F V PPY V E+ R +D G L + R +
Sbjct: 111 --GRFALAFVDPPYAEGPDAALAALGPLLAPGGRAVAEHDARRPPVDRIGPLSLVDRRTY 168
Query: 273 GRTHLAIYGPD 283
G T ++IY D
Sbjct: 169 GGTGISIYQRD 179
>gi|410667355|ref|YP_006919726.1| rRNA methyltransferase RsmD [Thermacetogenium phaeum DSM 12270]
gi|409105102|gb|AFV11227.1| rRNA methyltransferase RsmD [Thermacetogenium phaeum DSM 12270]
Length = 200
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 75/133 (56%), Gaps = 10/133 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+V+GG A+ K+L + K +RP + ++ A F+IL P S +LDL++G+GS
Sbjct: 4 LRVIGGIAKGKRLKTRKVKHLRPATDYLREALFNILMYQ--VPGSF----FLDLFAGSGS 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG V FVE DP + ++ NLE TGF D + + T V L ++ K
Sbjct: 58 IGIEALSRGAERVCFVEKDPG-NARLIRENLEITGFTDQAEVFTGDVFHILPLLKR---K 113
Query: 229 DGPFDYMSVTPPY 241
F + + PP+
Sbjct: 114 GCRFHIVFIDPPF 126
>gi|255524278|ref|ZP_05391237.1| methyltransferase [Clostridium carboxidivorans P7]
gi|296185397|ref|ZP_06853807.1| RNA methyltransferase, RsmD family [Clostridium carboxidivorans P7]
gi|255512103|gb|EET88384.1| methyltransferase [Clostridium carboxidivorans P7]
gi|296050231|gb|EFG89655.1| RNA methyltransferase, RsmD family [Clostridium carboxidivorans P7]
Length = 186
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 77/134 (57%), Gaps = 11/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++++ G A+ +K++SP GMD RP ++ VK A F+I+Q+ +L D++SGTG
Sbjct: 1 MRIIAGLAKGRKIMSPIGMDTTRPTLDRVKEAMFNIIQNKTYGSIAL------DVFSGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
S+G+EA SRG + + V+ P S L+ N+E F + + ++++ + E+F
Sbjct: 55 SLGLEAASRGAKQCYLVDRSPETYS-FLVKNVENLKFQQIC--KCINMDSY-KALEEFAR 110
Query: 228 KDGPFDYMSVTPPY 241
K FD + + PPY
Sbjct: 111 KKIVFDLIFIDPPY 124
>gi|291522174|emb|CBK80467.1| RNA methyltransferase, RsmD family [Coprococcus catus GD/7]
Length = 187
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 75/137 (54%), Gaps = 16/137 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++V+ GKARR +L S +GM+ RP + +K F++L Q C +LDL+SG+G
Sbjct: 1 MRVIAGKARRIQLKSMEGMNTRPTTDRIKETLFNMLSQDIYEC-------HFLDLFSGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG + FVE + V+ + NL T + + I V +T + + +
Sbjct: 54 AIGIEALSRGAASAVFVEHNRQAVA-CIKENLTKTKLMSQAEIMPVECQTAIRQLD---- 108
Query: 228 KDGP--FDYMSVTPPYT 242
DG FD + + PPY
Sbjct: 109 -DGKRHFDIVFMDPPYN 124
>gi|407474117|ref|YP_006788517.1| RsmD family RNA methyltransferase [Clostridium acidurici 9a]
gi|407050625|gb|AFS78670.1| RNA methyltransferase, RsmD family [Clostridium acidurici 9a]
Length = 187
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 94/198 (47%), Gaps = 30/198 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR L SPKG++ RP + VK + F+IL LDL+SG+G
Sbjct: 1 MRVITGIARGHSLKSPKGLNTRPTSDKVKESIFNILGYID------EKSTVLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+GIE +SRG +FV+ D + ++ NL T L+ S ++ V RA + +G
Sbjct: 55 IGIEFLSRGAETCYFVDSDINSIK-IIKENLSNTRLLEKSLVYKNNV----NRAIKILGS 109
Query: 228 KDGPFDYMSVTPPY---------------TAVDYE---VVEYPLRTDMLDTCGCLVKIKD 269
K FDY+ + PPY ++ E +VE+ + ++ + VK
Sbjct: 110 KKIRFDYIFLDPPYAKEHVMSTLENISEENLLNKEGKIIVEHETKLELPNQSHGFVKADY 169
Query: 270 RRFGRTHLAIYGPDWAQK 287
R++G T ++ Y + Q
Sbjct: 170 RKYGDTSVSFYTYEEVQN 187
>gi|373470131|ref|ZP_09561276.1| RNA methyltransferase, RsmD family [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
gi|371763099|gb|EHO51598.1| RNA methyltransferase, RsmD family [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
Length = 184
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 97/193 (50%), Gaps = 17/193 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR L +PKG RP + +K F+++ + L +LD+++G+G
Sbjct: 1 MRVISGTARSLILKTPKGNLTRPTTDKIKETLFNMIAN------DLYDATFLDMFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V+F ++D V + NL T FLD + + E+ L++ + G
Sbjct: 55 IGIEALSRGAKKVYFCDIDREAVE-CIKYNLAHTKFLDRAVVMKGSFESNLDKIK---GL 110
Query: 229 DGPFDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDW--- 284
FD + + PPY + + ++ L + ++D ++ +D + HL DW
Sbjct: 111 GEKFDIIFLDPPYKKGFEDKCLDILLNSTLIDEHTLIIIEEDFKTDTAHLE---KDWDIV 167
Query: 285 AQKKRKSEKKIPI 297
K+ KS K I I
Sbjct: 168 KVKEYKSNKHIFI 180
>gi|317121771|ref|YP_004101774.1| methyltransferase [Thermaerobacter marianensis DSM 12885]
gi|315591751|gb|ADU51047.1| methyltransferase [Thermaerobacter marianensis DSM 12885]
Length = 199
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 88/194 (45%), Gaps = 30/194 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V GG+ R + L P G VRP + V+ A F+IL A + R LDL++GTGS
Sbjct: 1 MRVTGGRWRGRPLRVPAGRQVRPTTDRVRQALFNILGPA------VEGARVLDLFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG E VE D VV+ +L NL G R + F A+ G+
Sbjct: 55 LAIEALSRGAREALLVEADRRVVA-LLGRNLRELGLGPEQGAVVWRQDVFAAIAKLADGR 113
Query: 229 DGPFDYMSVTPPY------------------TAVDYEVVEYPLRTDMLD----TCGCLVK 266
FD + PPY + VVE+ R + D G LV+
Sbjct: 114 R-VFDLILADPPYRQGVAPRVVQALGEGRVLAPGGWLVVEHDPREALPDRAGGEAGVLVQ 172
Query: 267 IKDRRFGRTHLAIY 280
+ RR+G T LA Y
Sbjct: 173 VDARRYGDTALAFY 186
>gi|126700177|ref|YP_001089074.1| hypothetical protein CD630_25590 [Clostridium difficile 630]
gi|255101721|ref|ZP_05330698.1| hypothetical protein CdifQCD-6_12989 [Clostridium difficile
QCD-63q42]
gi|255307590|ref|ZP_05351761.1| hypothetical protein CdifA_13437 [Clostridium difficile ATCC 43255]
gi|423084312|ref|ZP_17072817.1| RNA methyltransferase, RsmD family [Clostridium difficile
002-P50-2011]
gi|423088007|ref|ZP_17076392.1| RNA methyltransferase, RsmD family [Clostridium difficile
050-P50-2011]
gi|423092587|ref|ZP_17080391.1| RNA methyltransferase, RsmD family [Clostridium difficile
70-100-2010]
gi|115251614|emb|CAJ69447.1| conserved hypothetical protein [Clostridium difficile 630]
gi|357542617|gb|EHJ24659.1| RNA methyltransferase, RsmD family [Clostridium difficile
002-P50-2011]
gi|357543535|gb|EHJ25552.1| RNA methyltransferase, RsmD family [Clostridium difficile
050-P50-2011]
gi|357553457|gb|EHJ35204.1| RNA methyltransferase, RsmD family [Clostridium difficile
70-100-2010]
Length = 184
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 95/190 (50%), Gaps = 28/190 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR KL +PK DVRP + VK + F+++ S + LDL++GTGS
Sbjct: 1 MRVISGKARGLKLNTPKNEDVRPTTDRVKESLFNMINSY------IMESEVLDLFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG FV++ + +++ N++ S I + +T +++ + +
Sbjct: 55 LGIECLSRGAKSCTFVDISKESI-DIVKSNIKKARVESESIILNLDFKTAIDKLKL---Q 110
Query: 229 DGPFDYMSVTPPYTAVDY-EVVEYPLRTDMLDTCGCLV-----------------KIKDR 270
+ FD + + PPY + E +E +++L+ G +V K +D+
Sbjct: 111 NSKFDIIFMDPPYYKNMFIEAIEKIDNSNLLNEDGIIVVEHDTNDLFPDKICKLEKTRDK 170
Query: 271 RFGRTHLAIY 280
++G T L Y
Sbjct: 171 KYGNTTLTFY 180
>gi|330837737|ref|YP_004412378.1| methyltransferase [Sphaerochaeta coccoides DSM 17374]
gi|329749640|gb|AEC02996.1| methyltransferase [Sphaerochaeta coccoides DSM 17374]
Length = 200
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 97/212 (45%), Gaps = 39/212 (18%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG+ R + +L P G+ +RP M+ ++ + F IL S G +LDL+SG+G
Sbjct: 1 MRITGGRYRGRTILCPPGV-IRPAMDRMRESLFSILGSLDGHS-------FLDLFSGSGC 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV-G 227
VGIEA SRG VH +EMD + +V++ N+ + + F+ A +F+
Sbjct: 53 VGIEAASRGAEPVHLIEMDK-LKKDVILKNISFV---------ESPIRLFMADALRFIRA 102
Query: 228 KDGPFDYMSVTPPY----------TAVDYEVVE--------YPLRTDML--DTCGCLVKI 267
+ + PP+ D V+E YP + + G LV
Sbjct: 103 SKNTYSIIYADPPFPRNGKVRLAQAVADSSVLEDGGLFIIHYPAEENAQWPQSIGNLVFT 162
Query: 268 KDRRFGRTHLAIYGPDWAQKKRKSEKKIPIVT 299
+R +GR+HL Y D ++++ E +T
Sbjct: 163 DERVYGRSHLRFYRKDASRQEAMQETSQEAIT 194
>gi|358063819|ref|ZP_09150419.1| RsmD family RNA methyltransferase [Clostridium hathewayi WAL-18680]
gi|356697956|gb|EHI59516.1| RsmD family RNA methyltransferase [Clostridium hathewayi WAL-18680]
Length = 185
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 15/160 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLR-PGR-WLDLYSGT 166
++V+ G ARR L + +G+D RP + +K F+++ +LR PG +LDL+SG+
Sbjct: 1 MRVIAGSARRLNLKTIEGLDTRPTTDRIKETLFNMI--------NLRLPGSTFLDLFSGS 52
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G +GIEA+SRG + FVE +P V + NL T + + + + L+R E
Sbjct: 53 GGIGIEALSRGAVQAVFVEQNPKAVECIR-ENLRTTRLEEKAVVMACDALSGLKRLE--- 108
Query: 227 GKDGPFDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLV 265
GK+ FD + + PPY ++ +EY ++++D ++
Sbjct: 109 GKNYVFDTVFMDPPYDRELERLALEYLAGSELIDENSVII 148
>gi|397616529|gb|EJK64018.1| hypothetical protein THAOC_15292 [Thalassiosira oceanica]
Length = 317
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 99/220 (45%), Gaps = 54/220 (24%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGA------AFDILQSAGGCPASLRPGRWLDL 162
L+VLGG R +KL SP + +RPMM VK A +F GG P + R LD+
Sbjct: 83 LRVLGGSVRGRKLESPT-VYLRPMMGKVKEAVYSTFTSFGFYDGVGGQPCTTR---HLDI 138
Query: 163 YSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD---------------- 206
+SG+GSVG+E++SRG FV+M N+E GF
Sbjct: 139 FSGSGSVGLESLSRGAKHCTFVDMSSDCCG-ACERNIERCGFDGWNEGGIGTEVGDSGEP 197
Query: 207 VSSIHTVRVETFLERAEQFVGKD--GPFDYMSVTPPYTAVDYE----------------- 247
V+++ L R + VG D +D +++ PPY + Y
Sbjct: 198 VANVVCTDAYRAL-REPETVGIDPEAKYDLVTLCPPYEEIVYAELLDAVANSKLVKEDTV 256
Query: 248 -VVEYPLRTDML------DTCGCLVKIKDRRFGRTHLAIY 280
+VEYP+ L + G L+ +++R++GRT +A+Y
Sbjct: 257 ILVEYPVELGCLPHVIGREDGGVLIGVRNRKYGRTVIAMY 296
>gi|255656537|ref|ZP_05401946.1| hypothetical protein CdifQCD-2_12754 [Clostridium difficile
QCD-23m63]
gi|296450012|ref|ZP_06891776.1| RsmD family RNA methyltransferase [Clostridium difficile NAP08]
gi|296878393|ref|ZP_06902401.1| RsmD family RNA methyltransferase [Clostridium difficile NAP07]
gi|296261282|gb|EFH08113.1| RsmD family RNA methyltransferase [Clostridium difficile NAP08]
gi|296430691|gb|EFH16530.1| RsmD family RNA methyltransferase [Clostridium difficile NAP07]
Length = 184
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 95/190 (50%), Gaps = 28/190 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR KL +PK DVRP + VK + F+++ S + LDL++GTGS
Sbjct: 1 MRVISGKARGLKLNTPKNEDVRPTTDRVKESLFNMINSY------IMESEVLDLFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG FV++ + +++ N++ S I + +T +++ + +
Sbjct: 55 LGIECLSRGAKACTFVDISKESI-DIVKSNIKKARVESESIILNLDFKTAIDKLKL---Q 110
Query: 229 DGPFDYMSVTPPYTAVDY-EVVEYPLRTDMLDTCGCLV-----------------KIKDR 270
+ FD + + PPY + E +E +++L+ G +V K +D+
Sbjct: 111 NSKFDIIFMDPPYYKNMFIEAIEKIDNSNLLNEDGIIVVEHDTNDLFPDKICKLEKTRDK 170
Query: 271 RFGRTHLAIY 280
++G T L Y
Sbjct: 171 KYGNTTLTFY 180
>gi|422338361|ref|ZP_16419321.1| RNA methyltransferase, RsmD family [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|355372277|gb|EHG19618.1| RNA methyltransferase, RsmD family [Fusobacterium nucleatum subsp.
polymorphum F0401]
Length = 182
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ A S+ +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII--APYVEGSI----FLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EAISRG +E D + +I N++ GF D + V RA + +G
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEAIK-YIIENIDNLGFTDRCRAYKNDV----IRAIEILGR 109
Query: 228 KDGPFDYMSVTPPYT---------AVDYE---------VVEYPLRTDMLDTCGCLVKIKD 269
K+ FD + + PPY A+D + E+ L D+ D K +
Sbjct: 110 KNEKFDIIFMDPPYQDNVTKKVLKAIDKANILAEDGLIICEHHLLEDLEDNIASFRKTDE 169
Query: 270 RRFGRTHLAIY 280
R++ + L Y
Sbjct: 170 RKYNKKILTFY 180
>gi|326330641|ref|ZP_08196945.1| RNA methyltransferase, RsmD family [Nocardioidaceae bacterium
Broad-1]
gi|325951482|gb|EGD43518.1| RNA methyltransferase, RsmD family [Nocardioidaceae bacterium
Broad-1]
Length = 187
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 75/143 (52%), Gaps = 10/143 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++GG A ++LL+PKG+ RP + V+ A F ++S+ G A LR +LDLY+GTG
Sbjct: 1 MTRIIGGVAGGRRLLAPKGVRTRPTTDRVREALFSAIESSYGSLAGLR---FLDLYAGTG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA SRG V VE D + V+ N + GF + + T +
Sbjct: 58 AVGLEAWSRGAGVVTLVESDR-RTAGVIRSNAKELGFPRANVVAASVASTLVTPPAA--- 113
Query: 228 KDGPFDYMSVTPPYTAVDYEVVE 250
P+D + + PPY D V E
Sbjct: 114 ---PYDLVFLDPPYPLSDDAVAE 133
>gi|254976148|ref|ZP_05272620.1| hypothetical protein CdifQC_12574 [Clostridium difficile QCD-66c26]
gi|255093538|ref|ZP_05323016.1| hypothetical protein CdifC_12879 [Clostridium difficile CIP 107932]
gi|255315281|ref|ZP_05356864.1| hypothetical protein CdifQCD-7_13052 [Clostridium difficile
QCD-76w55]
gi|255517949|ref|ZP_05385625.1| hypothetical protein CdifQCD-_12616 [Clostridium difficile
QCD-97b34]
gi|255651065|ref|ZP_05397967.1| hypothetical protein CdifQCD_12831 [Clostridium difficile
QCD-37x79]
gi|260684131|ref|YP_003215416.1| hypothetical protein CD196_2397 [Clostridium difficile CD196]
gi|260687790|ref|YP_003218924.1| hypothetical protein CDR20291_2444 [Clostridium difficile R20291]
gi|306520921|ref|ZP_07407268.1| hypothetical protein CdifQ_14881 [Clostridium difficile QCD-32g58]
gi|384361773|ref|YP_006199625.1| hypothetical protein CDBI1_12425 [Clostridium difficile BI1]
gi|260210294|emb|CBA64593.1| conserved hypothetical protein [Clostridium difficile CD196]
gi|260213807|emb|CBE05773.1| conserved hypothetical protein [Clostridium difficile R20291]
Length = 184
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 95/190 (50%), Gaps = 28/190 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR KL +PK DVRP + VK + F+++ S + LDL++GTGS
Sbjct: 1 MRVISGKARGLKLNTPKNEDVRPTTDRVKESLFNMINSY------IMESEVLDLFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG FV++ + +++ N++ S I + +T +++ + +
Sbjct: 55 LGIECLSRGAKSCTFVDISKESI-DIVKSNVKKARVESESIILNLDFKTAIDKLKL---Q 110
Query: 229 DGPFDYMSVTPPYTAVDY-EVVEYPLRTDMLDTCGCLV-----------------KIKDR 270
+ FD + + PPY + E +E +++L+ G +V K +D+
Sbjct: 111 NSKFDIIFMDPPYYKNMFIEAIEKIDNSNLLNEDGIIVVEHDTNDLFPDKICKLEKTRDK 170
Query: 271 RFGRTHLAIY 280
++G T L Y
Sbjct: 171 KYGNTTLTFY 180
>gi|167630221|ref|YP_001680720.1| methyltransferase [Heliobacterium modesticaldum Ice1]
gi|167592961|gb|ABZ84709.1| methyltransferase, putative [Heliobacterium modesticaldum Ice1]
Length = 195
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 76/133 (57%), Gaps = 11/133 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+AR ++L+S KG + RP + VK A F +L AG C + + LDL++GTG+
Sbjct: 1 MRIISGQARGRRLVSVKGWETRPTADRVKEALFSVL--AGRCLEA----QCLDLFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + V++VE P V+ N+E TG + V + + ++ + +
Sbjct: 55 LGLEALSRGAAFVYWVEKHP-AACAVIAKNIEATGL----NRGKVLKQDVRQACQRLLAE 109
Query: 229 DGPFDYMSVTPPY 241
FD + PPY
Sbjct: 110 GRRFDLIFADPPY 122
>gi|333978692|ref|YP_004516637.1| methyltransferase [Desulfotomaculum kuznetsovii DSM 6115]
gi|333822173|gb|AEG14836.1| methyltransferase [Desulfotomaculum kuznetsovii DSM 6115]
Length = 187
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 93/195 (47%), Gaps = 30/195 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A++ +L P+G RP + VK + F+IL P S +LDLY+GTG+
Sbjct: 1 MRVIAGVAKKSRLKIPRGWSGRPTADRVKESLFNILGPR--IPGS----HFLDLYAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIEA+SRG + V FVE D V ++ NL G + + + + + FL Q G+
Sbjct: 55 VGIEALSRGAARVVFVERDKRAV-KIIRDNLVHVGLAERAEV--LAQDVFLG-LRQLSGQ 110
Query: 229 DGPFDYMSVTPPY---------TAVDYE---------VVEYPLRTDMLDTCGCLVKIKDR 270
FD + + PPY A+D V E R + G LV+ +
Sbjct: 111 Q--FDVVFLDPPYGQGLELPTLEAIDRHGLPARGGIVVAESSKRQALPGQVGRLVQYRQH 168
Query: 271 RFGRTHLAIYGPDWA 285
+ G T L+ Y P A
Sbjct: 169 QVGDTMLSFYQPGIA 183
>gi|220917304|ref|YP_002492608.1| methyltransferase [Anaeromyxobacter dehalogenans 2CP-1]
gi|219955158|gb|ACL65542.1| methyltransferase [Anaeromyxobacter dehalogenans 2CP-1]
Length = 179
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 83/191 (43%), Gaps = 27/191 (14%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G AR ++L PKG RP + V+GA F++L G LDLY+GTG
Sbjct: 1 MTRIIAGTARGRRLAVPKGQGTRPTSDKVRGAVFNLLGQ------FFEGGDVLDLYAGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++ +EA+SRGC+ VE D + +L N E G+ D + RV L R
Sbjct: 55 ALALEALSRGCARAVCVEAD-RPTAELLRRNAETCGWTDRVEVVRGRVPEALARLAP--- 110
Query: 228 KDGPFDYMSVTPPYT---------------AVDYEVVEYPLRTDMLDTCGCLVKIKDRRF 272
G F V PPY V E+ R +D G L R +
Sbjct: 111 --GRFALAFVDPPYAEGPDAALAALGPLLAPGGRAVAEHDARRPPVDRIGPLSLADRRTY 168
Query: 273 GRTHLAIYGPD 283
G T ++IY D
Sbjct: 169 GGTGISIYQRD 179
>gi|338732009|ref|YP_004670482.1| putative rRNA methyltransferase ylbH [Simkania negevensis Z]
gi|336481392|emb|CCB87991.1| putative rRNA methyltransferase ylbH [Simkania negevensis Z]
Length = 192
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 71/133 (53%), Gaps = 10/133 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GGK + KL++PKG RP +E ++ F+I C ++ +LD+++G+G+
Sbjct: 1 MRIAGGKFKNHKLIAPKGNTTRPTLEKLRQTVFNI------CQHTIEDATFLDVFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG S F+E + + + NL L +S TV L ++ K
Sbjct: 55 MGLEALSRGASHATFLEKNRLALQ-AIYKNLVN---LQLSDHATVFPGDALLSLKKLAQK 110
Query: 229 DGPFDYMSVTPPY 241
+ FD + + PPY
Sbjct: 111 NASFDLIYIDPPY 123
>gi|332799408|ref|YP_004460907.1| methyltransferase [Tepidanaerobacter acetatoxydans Re1]
gi|438002564|ref|YP_007272307.1| 16S rRNA (guanine(966)-N(2))-methyltransferase [Tepidanaerobacter
acetatoxydans Re1]
gi|332697143|gb|AEE91600.1| methyltransferase [Tepidanaerobacter acetatoxydans Re1]
gi|432179358|emb|CCP26331.1| 16S rRNA (guanine(966)-N(2))-methyltransferase [Tepidanaerobacter
acetatoxydans Re1]
Length = 179
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 44/193 (22%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS--AGGCPASLRPGRWLDLYSGT 166
++++GG R +K+ S GM+ RP + V+ A F+I+ S G C +LDL++GT
Sbjct: 1 MRIIGGFHRGRKIKSINGMNTRPTSDFVREALFNIIGSDVVGSC--------FLDLFAGT 52
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV--ETFLERAEQ 224
G+VGIEA+SRG F+E +P S ++ NL LD+ I RV + ++
Sbjct: 53 GAVGIEALSRGAQNAIFIEKNPIACS-IIKQNL-----LDLKLIGKGRVIQSDVISALKK 106
Query: 225 FVGKDGPFDYMSVTPPY----------------TAVDYEVVEYP----LRTDMLDTCGCL 264
+ + FD + + PPY A ++++P L+ D C
Sbjct: 107 LILEGNNFDIIFMDPPYFKNNIGATLDVLKDFNVAESIIIIQHPKDELLKFDGFACC--- 163
Query: 265 VKIKDRRFGRTHL 277
K +++GRT L
Sbjct: 164 ---KHKQYGRTAL 173
>gi|289765717|ref|ZP_06525095.1| methyltransferase [Fusobacterium sp. D11]
gi|289717272|gb|EFD81284.1| methyltransferase [Fusobacterium sp. D11]
Length = 182
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ ++ +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------TPYIKGSVFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EAISRG +E D + +I N++ GF D + V RA + +G
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEALK-YIIENIDNLGFSDRCRAYKNDV----VRAIEILGR 109
Query: 228 KDGPFDYMSVTPPYT---------AVDYE---------VVEYPLRTDMLDTCGCLVKIKD 269
K+ FD + + PPY A+D + E+ L D+ D K +
Sbjct: 110 KNEKFDIIFMDPPYQDNVTKKVLKAIDKANILAEDGLIICEHHLLEDLEDNIASFRKTDE 169
Query: 270 RRFGRTHLAIY 280
R++ + L Y
Sbjct: 170 RKYNKKILTFY 180
>gi|291563379|emb|CBL42195.1| RNA methyltransferase, RsmD family [butyrate-producing bacterium
SS3/4]
Length = 186
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 75/134 (55%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L + GM+ RP + +K F++LQ+ L R+LDL++G+G+
Sbjct: 1 MRVIAGSARRLLLKTVDGMETRPTTDRIKETLFNMLQN------DLYGARFLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E FV+ +S + NL+ T + + + + V + R + +
Sbjct: 55 IGIEALSRGAKEAVFVDKGDGQISCIR-ENLKTTHLEEKARVMSADVTEAVRR----LDR 109
Query: 229 DG-PFDYMSVTPPY 241
DG FD++ + PPY
Sbjct: 110 DGKSFDFIFMDPPY 123
>gi|168334445|ref|ZP_02692620.1| hypothetical protein Epulo_05694 [Epulopiscium sp. 'N.t. morphotype
B']
Length = 182
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 11/158 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R KLLSP+G++ RP + +K F+I+ L +LDL+SG+G
Sbjct: 1 MRIISGKFRGTKLLSPEGLNTRPTTDRIKETLFNIIN------FDLLECSFLDLFSGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FVE + + +L NL + + + + + E +
Sbjct: 55 IGIEALSRGAKTATFVENNKAAFA-ILEKNLLKIRLQNSAITYKIDIN---EALNLIYLQ 110
Query: 229 DGPFDYMSVTPPYTAVDY-EVVEYPLRTDMLDTCGCLV 265
FD + + PPY V+ +++++ + D+L G ++
Sbjct: 111 KETFDIIFMDPPYHYVNLQQIIDFIVTNDLLTPSGKII 148
>gi|291545920|emb|CBL19028.1| RNA methyltransferase, RsmD family [Ruminococcus sp. SR1/5]
Length = 182
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 14/163 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQ-SAGGCPASLRPGRWLDLYSGTG 167
++V+ GKARR L + G + RP + +K F+ILQ GC R+LDL+SG+G
Sbjct: 1 MRVIAGKARRLNLKTIPGNETRPTTDRIKETLFNILQPEIPGC-------RFLDLFSGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG FVE +P + + NL +T D + + V L+ G
Sbjct: 54 AIGIEALSRGAEYAVFVEKNPKACT-CIRENLSFTKLTDGGKLLNMDV---LQALRSLEG 109
Query: 228 KDGPFDYMSVTPPYTA-VDYEVVEYPLRTDMLDTCGCLVKIKD 269
+ PFD + + PY ++ V+EY + + D +V +D
Sbjct: 110 GE-PFDCIFMDAPYEQHLEQPVLEYLADSTLADENTLIVVEED 151
>gi|238916967|ref|YP_002930484.1| hypothetical protein EUBELI_01036 [Eubacterium eligens ATCC 27750]
gi|238872327|gb|ACR72037.1| Hypothetical protein EUBELI_01036 [Eubacterium eligens ATCC 27750]
Length = 186
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 76/140 (54%), Gaps = 14/140 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRPGRWLDLYSGTG 167
++V+ G AR L + +G + RP + +K F++LQS GC R+LDLY+G+G
Sbjct: 1 MRVIAGTARSLPLKAAEGDNTRPTTDRIKETLFNMLQSDIAGC-------RFLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG E VE + V+ NL +T LD ++ + + L + G
Sbjct: 54 AIGIEALSRGAKEAVLVE-NARAALAVIKDNLAFTK-LDSKAV--IMEQDVLSAINRLAG 109
Query: 228 KDGPFDYMSVTPPYTAVDYE 247
K G FD + + PPY DYE
Sbjct: 110 K-GVFDIIFMDPPY-GKDYE 127
>gi|418935866|ref|ZP_13489617.1| methyltransferase [Rhizobium sp. PDO1-076]
gi|375057400|gb|EHS53573.1| methyltransferase [Rhizobium sp. PDO1-076]
Length = 186
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 74/137 (54%), Gaps = 16/137 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + L +PK D+RP ++ + + F+IL A P L R LDL++GTG+
Sbjct: 1 MRVVGGEFRGRALATPKSNDIRPTIDRTRESLFNILAHA--HPGLLDGTRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT-VRVETFLERAEQFVG 227
VGIEA+SRGC FVE ++V +L W +D +H R+ L R +G
Sbjct: 59 VGIEALSRGCKSALFVE------NSVEGRSLLWEN-IDAFGLHGRARI---LRRDATDLG 108
Query: 228 KDG---PFDYMSVTPPY 241
PFD + PPY
Sbjct: 109 PSNNIEPFDLLFADPPY 125
>gi|354614287|ref|ZP_09032161.1| Protein of unknown function methylase putative, partial
[Saccharomonospora paurometabolica YIM 90007]
gi|353221349|gb|EHB85713.1| Protein of unknown function methylase putative, partial
[Saccharomonospora paurometabolica YIM 90007]
Length = 123
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 71/136 (52%), Gaps = 15/136 (11%)
Query: 108 LLQVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ G+A + L + PKG RP E V+ A F+ L +AG LR R LDLY+G+
Sbjct: 1 MTRIVAGRAGGRTLSVPPKG--TRPTSERVREALFNALDAAG----DLRGARVLDLYAGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G++G+EA+SRG ++ FVE D V VL NL G + VE L
Sbjct: 55 GALGLEALSRGAADAEFVESDRAAV-RVLRDNLARVGL--GGRVRHGTVEAVLA-----A 106
Query: 227 GKDGPFDYMSVTPPYT 242
G DGP D + PPY
Sbjct: 107 GPDGPVDLVLADPPYA 122
>gi|384109809|ref|ZP_10010671.1| RNA methyltransferase, RsmD family [Treponema sp. JC4]
gi|383868641|gb|EID84278.1| RNA methyltransferase, RsmD family [Treponema sp. JC4]
Length = 182
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 89/193 (46%), Gaps = 35/193 (18%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GGK + + + P G+ +RP M+ ++ + F IL G WLDL+SG+G+
Sbjct: 1 MRITGGKLKGRIIKCPDGV-IRPAMDRMRESVFSILGDLSG-------KSWLDLFSGSGT 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI--HTVRVETFLERAEQFV 226
+ IEA+SRG S V E D V+ VL N+E T I H + VE F++R +
Sbjct: 53 IAIEAVSRGASHVELCEKDKIKVNTVL-ENVEVTEKECGVKIKCHFMPVEYFIKRCKS-- 109
Query: 227 GKDGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIK 268
FDY+ PP+ +E +V P M D G L ++
Sbjct: 110 ----KFDYIFFDPPFPYKFHEDLIKKADEAGMLNPTGMIMVHRPEEHFMPDAIGNLTRVD 165
Query: 269 DRRFGRTHLAIYG 281
R +GR+ + Y
Sbjct: 166 QRVYGRSIVDFYA 178
>gi|254302821|ref|ZP_04970179.1| N6-adenine-specific methyltransferase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
gi|148323013|gb|EDK88263.1| N6-adenine-specific methyltransferase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
Length = 182
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------APYIEDSIFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EAISRG +E D + +I N++ GF D + V RA + +G
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEALK-YIIENIDNLGFSDRCRAYKNDV----IRAIEILGR 109
Query: 228 KDGPFDYMSVTPPYT---------AVDYE---------VVEYPLRTDMLDTCGCLVKIKD 269
K+ FD + + PPY A+D + E+ L D+ D K +
Sbjct: 110 KNEKFDIIFMDPPYQDNVTKKVLKAIDKANILAEDGLIICEHHLLEDLEDNIASFRKTDE 169
Query: 270 RRFGRTHLAIY 280
R++ + L Y
Sbjct: 170 RKYNKKILTFY 180
>gi|86158158|ref|YP_464943.1| hypothetical protein Adeh_1733 [Anaeromyxobacter dehalogenans
2CP-C]
gi|85774669|gb|ABC81506.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans
2CP-C]
Length = 179
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 83/191 (43%), Gaps = 27/191 (14%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G AR ++L PKG RP + V+GA F++L G LDLY+GTG
Sbjct: 1 MTRIIAGTARGRRLAVPKGQGTRPTSDKVRGAVFNLLGQ------FFDGGDVLDLYAGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++ +EA+SRGC+ VE D + +L N E G+ D + RV L R
Sbjct: 55 ALALEALSRGCARAVCVEAD-RPTAELLRRNAETCGWADRVEVVRGRVPEALARLAP--- 110
Query: 228 KDGPFDYMSVTPPYT---------------AVDYEVVEYPLRTDMLDTCGCLVKIKDRRF 272
G F V PPY V E+ R +D G L R +
Sbjct: 111 --GRFALAFVDPPYAEGPDAALAALGPLLAPGGRAVAEHDARRPPVDRIGPLSLADRRTY 168
Query: 273 GRTHLAIYGPD 283
G T ++IY D
Sbjct: 169 GGTGISIYQRD 179
>gi|398350405|ref|YP_006395869.1| ribosomal RNA small subunit methyltransferase D [Sinorhizobium
fredii USDA 257]
gi|390125731|gb|AFL49112.1| ribosomal RNA small subunit methyltransferase D [Sinorhizobium
fredii USDA 257]
Length = 186
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 87/192 (45%), Gaps = 31/192 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK D+RP + + + F+IL + P +L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRTLAAPKSNDIRPTTDRTRESLFNILSHS--YPEALDGARMLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLI-PNLEWTGFLDVSSIHTVRVETFLERAEQF-- 225
VG+EA+SRGC + FVE V LI N+E G R + F A
Sbjct: 59 VGLEALSRGCRQALFVEQG--VEGRGLIRVNIEALGL-------QGRAKIFRRDATDLGP 109
Query: 226 VGKDGPFDYMSVTPPYTA----------------VDYEVVEYPLRTDML-DTCGCLVKIK 268
VG PF + V PPY V +V R D+ G +
Sbjct: 110 VGTIEPFHLVFVDPPYAKGLGERALEQAAAGGWLVPGALVVLEERADVRPQLSGAFEPLD 169
Query: 269 DRRFGRTHLAIY 280
DR FG T + Y
Sbjct: 170 DRAFGDTRMHFY 181
>gi|313892650|ref|ZP_07826237.1| RNA methyltransferase, RsmD family [Dialister microaerophilus UPII
345-E]
gi|329121287|ref|ZP_08249914.1| ribosomal RNA small subunit methyltransferase D [Dialister
micraerophilus DSM 19965]
gi|313119047|gb|EFR42252.1| RNA methyltransferase, RsmD family [Dialister microaerophilus UPII
345-E]
gi|327470221|gb|EGF15684.1| ribosomal RNA small subunit methyltransferase D [Dialister
micraerophilus DSM 19965]
Length = 186
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 73/133 (54%), Gaps = 13/133 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ +L SP+GM+ RP + V+ + F++L + G L LD+++GTG+
Sbjct: 1 MKIIAGTAKGTQLKSPEGMNTRPTLGKVRESIFNVLSNVG-----LLETNILDIFAGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG S F++ V +NV+ N F + I V T L+ V +
Sbjct: 56 MGLEALSRGASTATFIDK---VTANVIKENANRCKFTNKVEILKKEVHTALK-----VLQ 107
Query: 229 DGPFDYMSVTPPY 241
+DY+ + PPY
Sbjct: 108 KKHYDYIFMDPPY 120
>gi|225027127|ref|ZP_03716319.1| hypothetical protein EUBHAL_01383 [Eubacterium hallii DSM 3353]
gi|224955591|gb|EEG36800.1| RNA methyltransferase, RsmD family [Eubacterium hallii DSM 3353]
Length = 184
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 70/133 (52%), Gaps = 10/133 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR KL + +GM RP + +K F++L + R+LDL+SG+G
Sbjct: 1 MRVIAGSARHLKLKTIEGMGTRPTTDRIKETLFNML------SFYVEESRFLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG S+ FVE + + + NL T + + + + V T L E K
Sbjct: 55 IGIEALSRGASQAVFVEQNRKAAA-CIEENLNHTHLREKAVVMSKDVMTALRILED---K 110
Query: 229 DGPFDYMSVTPPY 241
FDY+ + PPY
Sbjct: 111 KQAFDYIFMDPPY 123
>gi|313887956|ref|ZP_07821635.1| RNA methyltransferase, RsmD family [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312846122|gb|EFR33504.1| RNA methyltransferase, RsmD family [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 188
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 92/194 (47%), Gaps = 33/194 (17%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R KL++PKG+D RP + VK + F+IL + LDL+ G+G+
Sbjct: 1 MRIISGNRRGLKLIAPKGLDTRPTEDRVKESVFNILGQ------NFFDVTVLDLFCGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
GIE +SRG + +FV+ + V NL+ D + +E L +A + +
Sbjct: 55 NGIEFLSRGAEKAYFVDKSKEAIDCVK-KNLDKAKLTD----QAIVIENHLNQAMKNL-- 107
Query: 229 DGPFDYMSVTPPYTAVDYE-------------------VVEYPLRTDMLDTCGCLVKIKD 269
D FDY+ + PP+ D +VEY +L G V+IK+
Sbjct: 108 DTEFDYIYMDPPFERRDLYKKAFKLIREHRILKPNGKLIVEYNTDKPLLIGEG-FVEIKN 166
Query: 270 RRFGRTHLAIYGPD 283
+++G T ++I G D
Sbjct: 167 KKYGNTSISICGWD 180
>gi|227820998|ref|YP_002824968.1| methylase protein [Sinorhizobium fredii NGR234]
gi|227339997|gb|ACP24215.1| putative methylase protein [Sinorhizobium fredii NGR234]
Length = 185
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 71/136 (52%), Gaps = 14/136 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK D+RP + + + F+IL G P L GR LDL++GTG+
Sbjct: 1 MRIVGGEFRGRALATPKSNDIRPTTDRTRESLFNILSH--GYPGVLDGGRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLI-PNLEWTGFLDVSSIHTVRVETFLERAEQF-- 225
VG+EA+SRGC + FVE V LI N+E G R + F A
Sbjct: 59 VGLEALSRGCRQALFVEQG--VEGRGLIRVNIEALGL-------QGRAKIFRRDAVDLGP 109
Query: 226 VGKDGPFDYMSVTPPY 241
VG PF + PPY
Sbjct: 110 VGTMEPFHLVFADPPY 125
>gi|167758115|ref|ZP_02430242.1| hypothetical protein CLOSCI_00453 [Clostridium scindens ATCC 35704]
gi|336421613|ref|ZP_08601769.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
5_1_57FAA]
gi|167664012|gb|EDS08142.1| RNA methyltransferase, RsmD family [Clostridium scindens ATCC
35704]
gi|336000084|gb|EGN30237.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
5_1_57FAA]
Length = 189
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 88/167 (52%), Gaps = 14/167 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+R +L + GMD RP + +K F++L L +LDL++G+G
Sbjct: 1 MRVIAGSAKRIQLRTLDGMDTRPTTDRIKETLFNML------APYLYDCMFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E FVE +P ++ + NL T + T+ V T L + E
Sbjct: 55 IGIEALSRGSMETVFVEKNPKAMA-CIKENLTRTHLEHKAMTMTMDVMTALYKLEG---- 109
Query: 229 DGPFDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGCLV--KIKDRRF 272
+ FDY+ + PPY ++ V++Y + ++ G ++ +K+ +F
Sbjct: 110 EKQFDYIFLDPPYGKELEKRVLQYLADSSLVAAEGVIIVEALKETKF 156
>gi|110802301|ref|YP_699016.1| methyltransferase [Clostridium perfringens SM101]
gi|110682802|gb|ABG86172.1| RNA methyltransferase, RsmD family [Clostridium perfringens SM101]
Length = 185
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 10/133 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR +KLLSP + RP ++ VK + F ++Q + +D+++GTGS
Sbjct: 1 MRIIAGKARGRKLLSPPTYETRPTLDRVKESMFSMIQ------WYIPDAVVIDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG E + V+ P V VL N+E GF D H + + + +
Sbjct: 55 LGLEAASRGAKECYLVDKSP-VTFPVLKKNIENLGFGDFC--HALNTDAY-SALRSLASR 110
Query: 229 DGPFDYMSVTPPY 241
FD M + PPY
Sbjct: 111 GKVFDLMFIDPPY 123
>gi|336401304|ref|ZP_08582075.1| RsmD family RNA methyltransferase [Fusobacterium sp. 21_1A]
gi|336161214|gb|EGN64221.1| RsmD family RNA methyltransferase [Fusobacterium sp. 21_1A]
Length = 182
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------TPYIEGSVFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EAISRG +E D + +I N++ GF D + V RA + +G
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEALK-YIIENIDNLGFSDRCRAYKNDV----VRAIEILGR 109
Query: 228 KDGPFDYMSVTPPYT---------AVDYE---------VVEYPLRTDMLDTCGCLVKIKD 269
K+ FD + + PPY A+D + E+ L D+ D K +
Sbjct: 110 KNEKFDIIFMDPPYQDNVTKKVLKAIDKANILVEDGLIICEHHLLEDLEDNVAAFRKTDE 169
Query: 270 RRFGRTHLAIY 280
R++ + L Y
Sbjct: 170 RKYNKKILTFY 180
>gi|18310712|ref|NP_562646.1| hypothetical protein CPE1730 [Clostridium perfringens str. 13]
gi|110800994|ref|YP_696416.1| methyltransferase [Clostridium perfringens ATCC 13124]
gi|168207256|ref|ZP_02633261.1| putative methyltransferase [Clostridium perfringens E str. JGS1987]
gi|168210638|ref|ZP_02636263.1| putative methyltransferase [Clostridium perfringens B str. ATCC
3626]
gi|168214206|ref|ZP_02639831.1| putative methyltransferase [Clostridium perfringens CPE str. F4969]
gi|168217016|ref|ZP_02642641.1| putative methyltransferase [Clostridium perfringens NCTC 8239]
gi|169342695|ref|ZP_02863736.1| putative methyltransferase [Clostridium perfringens C str. JGS1495]
gi|182625849|ref|ZP_02953615.1| putative methyltransferase [Clostridium perfringens D str. JGS1721]
gi|422346400|ref|ZP_16427314.1| RsmD family RNA methyltransferase [Clostridium perfringens
WAL-14572]
gi|422874650|ref|ZP_16921135.1| putative methyltransferase [Clostridium perfringens F262]
gi|18145393|dbj|BAB81436.1| conserved hypothetical protein [Clostridium perfringens str. 13]
gi|110675641|gb|ABG84628.1| RNA methyltransferase, RsmD family [Clostridium perfringens ATCC
13124]
gi|169299201|gb|EDS81271.1| putative methyltransferase [Clostridium perfringens C str. JGS1495]
gi|170661356|gb|EDT14039.1| putative methyltransferase [Clostridium perfringens E str. JGS1987]
gi|170711328|gb|EDT23510.1| putative methyltransferase [Clostridium perfringens B str. ATCC
3626]
gi|170714309|gb|EDT26491.1| putative methyltransferase [Clostridium perfringens CPE str. F4969]
gi|177908883|gb|EDT71375.1| putative methyltransferase [Clostridium perfringens D str. JGS1721]
gi|182380973|gb|EDT78452.1| putative methyltransferase [Clostridium perfringens NCTC 8239]
gi|373225945|gb|EHP48272.1| RsmD family RNA methyltransferase [Clostridium perfringens
WAL-14572]
gi|380304291|gb|EIA16580.1| putative methyltransferase [Clostridium perfringens F262]
Length = 185
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 10/133 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR +KLLSP + RP ++ VK + F ++Q + +D+++GTGS
Sbjct: 1 MRIIAGKARGRKLLSPPTYETRPTLDRVKESMFSMIQ------WYIPDAVVIDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG E + V+ P V VL N+E GF D H + + + +
Sbjct: 55 LGLEAASRGAKECYLVDKSP-VTFPVLKKNIENLGFGDFC--HALNTDAY-SALRSLASR 110
Query: 229 DGPFDYMSVTPPY 241
FD M + PPY
Sbjct: 111 GKVFDLMFIDPPY 123
>gi|357040480|ref|ZP_09102267.1| methyltransferase [Desulfotomaculum gibsoniae DSM 7213]
gi|355356571|gb|EHG04357.1| methyltransferase [Desulfotomaculum gibsoniae DSM 7213]
Length = 191
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 10/133 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+++KL SP + VRP + VK + F+I+ S L + DLY+GTG
Sbjct: 1 MRVIAGTAKKRKLKSPGKLPVRPTADRVKESLFNIIGS------RLPDSYFADLYAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIEA+SRG ++V FVE D V+ +L NL TG + + V+ ++ A + K
Sbjct: 55 VGIEALSRGAAKVLFVEKDSRVM-RILQDNLAITGLGGDAEVILGDVQAAIDIAMR---K 110
Query: 229 DGPFDYMSVTPPY 241
FD + PPY
Sbjct: 111 QLTFDIVFADPPY 123
>gi|308273139|emb|CBX29742.1| hypothetical protein N47_F14370 [uncultured Desulfobacterium sp.]
Length = 187
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 26/184 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL--QSAGGCPASLRPGRWLDLYSGT 166
L+V+ G + +KL S G+ +RP ++ + F+IL Q G LDL++GT
Sbjct: 4 LRVISGDLKGRKLFSINGLKIRPTSGRLRESIFNILSDQVVGSV--------VLDLFAGT 55
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER----- 221
G++GIEA+SRG S F++ D +S + I N+ G + S+I + + R
Sbjct: 56 GAMGIEALSRGASFAAFIDKDKEAISTI-IKNINICGLAERSTIAKFDILKDINRYANKL 114
Query: 222 -AEQFVGKDGPFDYMSVTPPYTAVDYE---------VVEYPLRTDMLDTCGCLVKIKDRR 271
A V D P++ +TP ++ VVE+ LR + + RR
Sbjct: 115 TAANLVFIDPPYNRNLITPALISLSKSRILKNNASLVVEHDLREALFENISGYAITDQRR 174
Query: 272 FGRT 275
+G+T
Sbjct: 175 YGKT 178
>gi|302386344|ref|YP_003822166.1| methyltransferase [Clostridium saccharolyticum WM1]
gi|302196972|gb|ADL04543.1| methyltransferase [Clostridium saccharolyticum WM1]
Length = 183
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 72/133 (54%), Gaps = 10/133 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKARR L + +G + RP + +K F+++Q G P +LDL+SG+G+
Sbjct: 1 MRVIAGKARRLVLKTIEGQETRPTTDRIKETLFNMIQ--GDLPGCC----FLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG VE +P + + NL+ T D + + V T L R E GK
Sbjct: 55 IGIEALSRGAGLAVLVEQNPK-AAECIRENLKTTKLEDDAIVMNCDVMTGLGRLE---GK 110
Query: 229 DGPFDYMSVTPPY 241
FD + + PPY
Sbjct: 111 GHVFDLVFMDPPY 123
>gi|72161051|ref|YP_288708.1| hypothetical protein Tfu_0647 [Thermobifida fusca YX]
gi|71914783|gb|AAZ54685.1| Conserved hypothetical protein 95 [Thermobifida fusca YX]
Length = 193
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 84/164 (51%), Gaps = 13/164 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G A ++L P+G RP + V+ A F + S G A LR LDLY+G+G
Sbjct: 1 MTRIIAGTAGGRRLAVPRGRTTRPTSDRVREALFASVLSELGTLAGLRV---LDLYAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++G+EA+SRG + VE D + V+ N+ G L + + RVE L R G
Sbjct: 58 AIGLEALSRGAAHALLVEADRRAAA-VIDRNIAQLG-LPGARLVVDRVERVLSR-----G 110
Query: 228 KD-GPFDYMSVTPPYTAVDYEV--VEYPLRTDMLDTCGCLVKIK 268
D GP+D++ PPY D EV V LR T G L+ ++
Sbjct: 111 PDGGPYDFVFADPPYAIEDREVTAVLEALRDHGWLTAGTLIVVE 154
>gi|296327942|ref|ZP_06870477.1| RsmD family RNA methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|296154898|gb|EFG95680.1| RsmD family RNA methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 182
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------APYIEGSIFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EAISRG +E D + +I N++ GF D + V RA + +G
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEALK-YIIENIDNLGFSDRCRAYKNDV----IRAIEILGR 109
Query: 228 KDGPFDYMSVTPPYT---------AVDYE---------VVEYPLRTDMLDTCGCLVKIKD 269
K+ FD + + PPY A+D + E+ L D+ D K +
Sbjct: 110 KNEKFDIIFMDPPYQDNVTKKVLKAIDKANILAEDGLIICEHHLLEDLEDNIASFRKTDE 169
Query: 270 RRFGRTHLAIY 280
R++ + L Y
Sbjct: 170 RKYNKKILTFY 180
>gi|421526791|ref|ZP_15973397.1| methyltransferase [Fusobacterium nucleatum ChDC F128]
gi|402256899|gb|EJU07375.1| methyltransferase [Fusobacterium nucleatum ChDC F128]
Length = 182
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ A S+ +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII--APYVEGSI----FLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EAISRG +E D + +I N++ GF D + V RA + +G
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEALK-YIIENIDNLGFSDRCRAYKNDV----IRAIEILGR 109
Query: 228 KDGPFDYMSVTPPYT---------AVDYE---------VVEYPLRTDMLDTCGCLVKIKD 269
K+ FD + + PPY A+D + E+ L D+ D K +
Sbjct: 110 KNEKFDIIFMDPPYQDNVTKKVLKAIDKANILAEDGLIICEHHLLEDLEDNIASFRKTDE 169
Query: 270 RRFGRTHLAIY 280
R++ + L Y
Sbjct: 170 RKYNKKILTFY 180
>gi|237744130|ref|ZP_04574611.1| methyltransferase [Fusobacterium sp. 7_1]
gi|260494285|ref|ZP_05814416.1| RsmD family RNA methyltransferase [Fusobacterium sp. 3_1_33]
gi|229431359|gb|EEO41571.1| methyltransferase [Fusobacterium sp. 7_1]
gi|260198431|gb|EEW95947.1| RsmD family RNA methyltransferase [Fusobacterium sp. 3_1_33]
Length = 182
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------TPYIEGSVFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EAISRG +E D + +I N++ GF D + V RA + +G
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEALK-YIIENIDNLGFSDRCRAYKNDV----IRAIEILGR 109
Query: 228 KDGPFDYMSVTPPYT---------AVDYE---------VVEYPLRTDMLDTCGCLVKIKD 269
K+ FD + + PPY A+D + E+ L D+ D K +
Sbjct: 110 KNEKFDIIFMDPPYQDNVTKKVLKAIDKANILAEDGLIICEHHLLEDLEDNIASFRKTDE 169
Query: 270 RRFGRTHLAIY 280
R++ + L Y
Sbjct: 170 RKYNKKILTFY 180
>gi|224532821|ref|ZP_03673436.1| putative methyltransferase [Borrelia burgdorferi WI91-23]
gi|225548532|ref|ZP_03769580.1| putative methyltransferase [Borrelia burgdorferi 94a]
gi|226320947|ref|ZP_03796495.1| putative methyltransferase [Borrelia burgdorferi 29805]
gi|224512210|gb|EEF82596.1| putative methyltransferase [Borrelia burgdorferi WI91-23]
gi|225370795|gb|EEH00230.1| putative methyltransferase [Borrelia burgdorferi 94a]
gi|226233649|gb|EEH32382.1| putative methyltransferase [Borrelia burgdorferi 29805]
Length = 189
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 17/136 (12%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ V GK + KK+L PK VRP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 11 FMYVSSGKYKGKKILFPKNGSVRPVMSLVREAFFSIIFK------DIVNSKFLDVFAGTG 64
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ +EA+SRG S H VE + + L+ N + G + F +RAE F+
Sbjct: 65 IMSVEALSRGASLAHLVECNRK-IKITLVENFSFVG---------EFYKFFFQRAEDFLS 114
Query: 228 -KDGPFDYMSVTPPYT 242
KD +D++ + PP+
Sbjct: 115 KKDLFYDFIYLDPPFN 130
>gi|239623795|ref|ZP_04666826.1| pantetheine-phosphate adenylyltransferase [Clostridiales bacterium
1_7_47_FAA]
gi|239521826|gb|EEQ61692.1| pantetheine-phosphate adenylyltransferase [Clostridiales bacterium
1_7_47FAA]
Length = 185
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQ-SAGGCPASLRPGRWLDLYSGTG 167
++V+ G ARR L + GMD RP + +K F++LQ GC ++LDL+SG+G
Sbjct: 1 MRVIAGSARRLLLKTVDGMDTRPTTDRIKETLFNMLQPQIPGC-------QFLDLFSGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG +E +P V+ + NL T + + + V T L+R E G
Sbjct: 54 AIGIEALSRGADLAVMIENNPQAVACIR-ENLGTTRLEERAVVMACDVLTGLKRLE---G 109
Query: 228 KDGPFDYMSVTPPY 241
+ FD + + PPY
Sbjct: 110 HNYRFDLVFMDPPY 123
>gi|336418713|ref|ZP_08598985.1| RNA methyltransferase, RsmD family [Fusobacterium sp. 11_3_2]
gi|423137071|ref|ZP_17124714.1| RsmD family RNA methyltransferase [Fusobacterium nucleatum subsp.
animalis F0419]
gi|336164390|gb|EGN67297.1| RNA methyltransferase, RsmD family [Fusobacterium sp. 11_3_2]
gi|371961138|gb|EHO78781.1| RsmD family RNA methyltransferase [Fusobacterium nucleatum subsp.
animalis F0419]
Length = 182
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------TPYIEGSVFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EAISRG +E D + +I N++ GF D + V RA + +G
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEALK-YIIENIDNLGFSDRCRAYKNDV----IRAIEILGR 109
Query: 228 KDGPFDYMSVTPPYT---------AVDYE---------VVEYPLRTDMLDTCGCLVKIKD 269
K+ FD + + PPY A+D + E+ L D+ D K +
Sbjct: 110 KNEKFDIIFMDPPYQDNVTKKVLKAIDKANILVEDGLIICEHHLLEDLEDNIASFRKTDE 169
Query: 270 RRFGRTHLAIY 280
R++ + L Y
Sbjct: 170 RKYNKKILTFY 180
>gi|325294970|ref|YP_004281484.1| methyltransferase [Desulfurobacterium thermolithotrophum DSM 11699]
gi|325065418|gb|ADY73425.1| methyltransferase [Desulfurobacterium thermolithotrophum DSM 11699]
Length = 193
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 14/162 (8%)
Query: 109 LQVLGGKARRKKLLS-PKGMD---VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYS 164
++++GGK + +++ S PK D +RP E VK + F IL + L ++LDL++
Sbjct: 1 MRIIGGKYKGRRIKSLPKRSDTKLLRPTTERVKESVFSILNN------YLEGVKFLDLFA 54
Query: 165 GTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
GTG+VGIEAISRG +V FVE D N++ NL G + + + ++ ++
Sbjct: 55 GTGNVGIEAISRGAKKVVFVENDKR-FCNLIEENLRKLGV--ERGKYEIICDDYVNALKK 111
Query: 225 FVGKDGPFDYMSVTPPYTAVDY-EVVEYPLRTDMLDTCGCLV 265
+ FD++ PPY Y +V D+LD G L+
Sbjct: 112 LAKRGEKFDFIYADPPYEKGFYTRIVNMVKNFDLLDEDGLLI 153
>gi|216264056|ref|ZP_03436050.1| putative methyltransferase [Borrelia afzelii ACA-1]
gi|215980100|gb|EEC20922.1| putative methyltransferase [Borrelia afzelii ACA-1]
Length = 189
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 82/154 (53%), Gaps = 18/154 (11%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
L+ V GK + +K+L PK +RP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 11 LMYVSSGKYKGRKILFPKTGAIRPVMSLVREAFFSIIFK------DIISSKFLDVFAGTG 64
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ IEA+SRG S H VE + S L+ N + V + + F +RAE F+
Sbjct: 65 IMSIEALSRGASLAHLVECNKKTKST-LVKNFSF-----VEEFY----KFFFQRAEDFLS 114
Query: 228 -KDGPFDYMSVTPPYTAVD-YEVVEYPLRTDMLD 259
KD +D++ + PP+ D ++E L+ +L+
Sbjct: 115 KKDLFYDFIYLDPPFNYKDKINLLEIILKGKILN 148
>gi|85859442|ref|YP_461644.1| adenine-specific methyltransferase [Syntrophus aciditrophicus SB]
gi|85722533|gb|ABC77476.1| adenine-specific methyltransferase [Syntrophus aciditrophicus SB]
Length = 190
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 74/134 (55%), Gaps = 13/134 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+A+ +++ P G VRP + +K A F+IL G +LDLY+GTG+
Sbjct: 1 MRIIGGQAKGRRIAVPPGYAVRPTSDRIKEALFNILGPVEGQ-------EFLDLYAGTGN 53
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA+SRG V FVE +V++ L NLE GF I + V E+A + +
Sbjct: 54 VGMEALSRGADVVVFVEKISVLVTS-LKRNLEQFGFQGRYRIFRMEV----EKAVAHLAE 108
Query: 229 DGP-FDYMSVTPPY 241
G FD + PPY
Sbjct: 109 GGMCFDLIFADPPY 122
>gi|384564907|ref|ZP_10012011.1| RNA methyltransferase, RsmD family [Saccharomonospora glauca K62]
gi|384520761|gb|EIE97956.1| RNA methyltransferase, RsmD family [Saccharomonospora glauca K62]
Length = 185
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 91/168 (54%), Gaps = 21/168 (12%)
Query: 108 LLQVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ G+AR + L + PKG RP E+V+ A F L++A L R LDLYSG+
Sbjct: 1 MTRIVAGRARGRILRVPPKG--TRPTTELVREALFSALEAAD----ELTDVRVLDLYSGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G++G+EA+SRG E FVE D +++L N+ G V + +VET + Q
Sbjct: 55 GALGLEALSRGAREAVFVEAD-RTAADILRGNIAKVGLGGV--VRQGKVETVV---SQPA 108
Query: 227 GKDGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTC----GCLVKIKDR 270
G+ PFD + PPY AVD E + L T ++D G LV ++ R
Sbjct: 109 GQ--PFDLVLADPPY-AVDAETLGVVL-TQLVDNGWLAEGALVVVERR 152
>gi|381180841|ref|ZP_09889678.1| methyltransferase [Treponema saccharophilum DSM 2985]
gi|380767197|gb|EIC01199.1| methyltransferase [Treponema saccharophilum DSM 2985]
Length = 192
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 76/154 (49%), Gaps = 25/154 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GGK + + P G+ +RP M+ ++ + F IL G WLDL+SG+G+
Sbjct: 1 MRITGGKLKGHVVKCPDGI-IRPAMDRMRESVFAILGDLSG-------KSWLDLFSGSGT 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI--HTVRVETFLERAEQFV 226
+ IEA+SRG + V E D V VL N+ T + I H + VE FL+R
Sbjct: 53 IAIEAVSRGAARVQLCEKDKIKVKQVL-ENVAVTERICNVKIGCHFLAVELFLKRCRD-- 109
Query: 227 GKDGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDT 260
FDY+ + PP+ Y RT++L T
Sbjct: 110 ----TFDYIFLDPPFP--------YKFRTELLKT 131
>gi|289578491|ref|YP_003477118.1| methyltransferase [Thermoanaerobacter italicus Ab9]
gi|289528204|gb|ADD02556.1| methyltransferase [Thermoanaerobacter italicus Ab9]
Length = 184
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 92/192 (47%), Gaps = 32/192 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R +K+ S +G +VRP + VK + F+IL + + +LDL++GTG+
Sbjct: 1 MRVIAGKLRGRKIKSIEGNEVRPTADRVKESLFNILMN------KIEGSVFLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
+GIEA+SRG +FV+ V + + L F + ++V L+++
Sbjct: 55 IGIEALSRGAQFCYFVDKSLKSVKCIRENVAELNLIPFAKILHRDVLKVIEILDQS---- 110
Query: 227 GKDGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIK 268
+ FD + + PPY E + E+ + +T G LVKI+
Sbjct: 111 --NTKFDIIFLDPPYYQNLAEKTLIKLGKAKLLKRGGIIIAEHHKNDKVKETYGNLVKIR 168
Query: 269 DRRFGRTHLAIY 280
+ ++G T L+ Y
Sbjct: 169 ENKYGETILSFY 180
>gi|111115030|ref|YP_709648.1| hypothetical protein BAPKO_0213 [Borrelia afzelii PKo]
gi|410678963|ref|YP_006931365.1| hypothetical protein BafHLJ01_0219 [Borrelia afzelii HLJ01]
gi|110890304|gb|ABH01472.1| conserved hypothetical protein [Borrelia afzelii PKo]
gi|408536351|gb|AFU74482.1| hypothetical protein BafHLJ01_0219 [Borrelia afzelii HLJ01]
Length = 189
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 82/154 (53%), Gaps = 18/154 (11%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
L+ V GK + +K+L PK +RP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 11 LMYVSSGKYKGRKILFPKTGAIRPVMSLVREAFFSIIFK------DIINSKFLDVFAGTG 64
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ IEA+SRG S H VE + S L+ N + V + + F +RAE F+
Sbjct: 65 IMSIEALSRGASLAHLVECNKKTKST-LVKNFSF-----VEEFY----KFFFQRAEDFLS 114
Query: 228 -KDGPFDYMSVTPPYTAVD-YEVVEYPLRTDMLD 259
KD +D++ + PP+ D ++E L+ +L+
Sbjct: 115 KKDLFYDFIYLDPPFNYKDKINLLEIILKGKILN 148
>gi|121533820|ref|ZP_01665647.1| putative methyltransferase [Thermosinus carboxydivorans Nor1]
gi|121307811|gb|EAX48726.1| putative methyltransferase [Thermosinus carboxydivorans Nor1]
Length = 163
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 86/164 (52%), Gaps = 11/164 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ KL +P+ DVRP + VK + F+IL S + LDL++GTG+
Sbjct: 1 MRIITGSAKGTKLKTPRSFDVRPTADRVKESIFNILGSV------VLDADVLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG FV+ P ++ ++ N+ T D + ++ +++RA Q +G+
Sbjct: 55 LGLEAVSRGAKSAIFVDNSPASIA-LIKENIIRTKSADRTHVYKSDALRYIDRAAQ-LGQ 112
Query: 229 DGPFDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLVKIKDRR 271
+ FD + PPY + VVE +L G LV RR
Sbjct: 113 N--FDLIFCDPPYNKGLATAVVEKLDSRLLLRESGLLVIEHSRR 154
>gi|62184779|ref|YP_219564.1| hypothetical protein CAB134 [Chlamydophila abortus S26/3]
gi|62147846|emb|CAH63592.1| conserved hypothetical protein [Chlamydophila abortus S26/3]
Length = 187
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 78/165 (47%), Gaps = 25/165 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + VRP VVK A F+I C + R+LDL++G GS
Sbjct: 1 MKILAGKYKGKSLKTFSNPSVRPTCGVVKEAVFNI------CSVYVEDARFLDLFAGVGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVV------SNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
VG EA+SRG + V FV+ V S +L PNL T I + ++R
Sbjct: 55 VGFEALSRGAASVTFVDSSAQSVRLIRANSQLLHPNLPIT-------IIKQEARSAIQRL 107
Query: 223 EQFVGKDGPFDYMSVTPPYTAVD---YEVVEYPLRTDMLDTCGCL 264
+ K+ FD + + PPY D V+ + +LD GCL
Sbjct: 108 AK---KNMSFDLIYIDPPYNLEDSYLAAVLRDIVVGGILDKHGCL 149
>gi|70726830|ref|YP_253744.1| hypothetical protein SH1829 [Staphylococcus haemolyticus JCSC1435]
gi|68447554|dbj|BAE05138.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 183
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ LQ G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKVLESLEGRNTRPTMDKVKEGIFNSLQEVHGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL+ D S ++ + L+ + +
Sbjct: 53 LGIEALSRGMEKVIFVDQNFKAVK-VIQANLKQLDLRDQSEVYKNNADRALKALNK---R 108
Query: 229 DGPFDYMSVTPPYT 242
+ FDY+ + PPY
Sbjct: 109 EIQFDYIFLDPPYN 122
>gi|424824828|ref|ZP_18249815.1| hypothetical protein CAB1_0142 [Chlamydophila abortus LLG]
gi|333409927|gb|EGK68914.1| hypothetical protein CAB1_0142 [Chlamydophila abortus LLG]
Length = 187
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 78/165 (47%), Gaps = 25/165 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + VRP VVK A F+I C + R+LDL++G GS
Sbjct: 1 MKILAGKYKGKSLKTFSNPSVRPTCGVVKEAVFNI------CSVYVEDARFLDLFAGVGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVV------SNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
VG EA+SRG + V FV+ V S +L PNL T I + ++R
Sbjct: 55 VGFEALSRGAASVTFVDSSAQSVRLIRANSQLLHPNLPIT-------IIKQEARSAIQRL 107
Query: 223 EQFVGKDGPFDYMSVTPPYTAVD---YEVVEYPLRTDMLDTCGCL 264
+ K+ FD + + PPY D V+ + +LD GCL
Sbjct: 108 AK---KNMSFDLIYIDPPYNLEDSYLAAVLRDIVVGGILDKHGCL 149
>gi|268611482|ref|ZP_06145209.1| putative methyltransferase [Ruminococcus flavefaciens FD-1]
Length = 186
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 14/157 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR ++L++P+GMDVRP + VK A F +Q + LDL++G+G
Sbjct: 1 MRVITGIARGRRLVAPEGMDVRPTTDKVKEAIFSAIQ------FQIEGADVLDLFAGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEAISRG F++ + V NL TGF S + + +++ Q
Sbjct: 55 MGIEAISRGAKHAVFIDSSNRALRCVH-ENLRNTGFERYSEVISRDSYDYIKLTSQH--- 110
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLV 265
FD + + PPY + V P L GC++
Sbjct: 111 ---FDIIILDPPYRH-SHIVNILPFAAKKLKDGGCII 143
>gi|170761383|ref|YP_001787809.1| methyltransferase [Clostridium botulinum A3 str. Loch Maree]
gi|169408372|gb|ACA56783.1| RNA methyltransferase, RsmD family [Clostridium botulinum A3 str.
Loch Maree]
Length = 185
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 10/134 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+LSP+ RP ++ +K + F+I+Q+ + R LD+++GTGS
Sbjct: 1 MRIISGSARGRKILSPQSSVTRPTLDRIKESIFNIIQN------QVYGSRVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG + V+ P +L N++ F D+ + T L E+F K
Sbjct: 55 LGLEAASRGAKFSYLVDKSPETYP-LLRENIKNLKFEDLCKSFNMDAYTAL---EEFASK 110
Query: 229 DGPFDYMSVTPPYT 242
FD + + PPY
Sbjct: 111 SIVFDLIFIDPPYA 124
>gi|225389050|ref|ZP_03758774.1| hypothetical protein CLOSTASPAR_02795 [Clostridium asparagiforme
DSM 15981]
gi|225044872|gb|EEG55118.1| hypothetical protein CLOSTASPAR_02795 [Clostridium asparagiforme
DSM 15981]
Length = 188
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 10/134 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L + G+D RP + +K F++LQ S+ +LDL+SG+G+
Sbjct: 1 MRVIAGSARRLLLKTVDGLDTRPTTDRIKETLFNMLQP------SIPDCIFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG S VE +P V + + NL T D + + V + L + E GK
Sbjct: 55 IGIEALSRGASLAVLVENNPKAV-DCIRENLSRTKLEDRAVVMGNDVISSLRKLE---GK 110
Query: 229 DGPFDYMSVTPPYT 242
+ FD + + PPY
Sbjct: 111 NYVFDIIFMDPPYN 124
>gi|315122183|ref|YP_004062672.1| hypothetical protein CKC_02165 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495585|gb|ADR52184.1| hypothetical protein CKC_02165 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 186
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L +PK +RP K A FDIL P L R LD+++GTGS
Sbjct: 1 MRIVGGKFRGRLLYTPKNRSIRPSDSRTKKALFDILTHV--YPDYLASTRMLDMFAGTGS 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG EA+SRGC V FV+ + + ++ N E FL V + + L + +G
Sbjct: 59 VGFEALSRGCHYVLFVDNNAESI-RLIRKNSE---FLGVEKSCNIFFKDVLHLRK--IGN 112
Query: 229 DGPFDYMSVTPPY 241
PF + + PPY
Sbjct: 113 IKPFKLLYLDPPY 125
>gi|224534386|ref|ZP_03674964.1| putative methyltransferase [Borrelia spielmanii A14S]
gi|224514488|gb|EEF84804.1| putative methyltransferase [Borrelia spielmanii A14S]
Length = 189
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 17/136 (12%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
L+ V GK + KK+L PK +RP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 11 LMYVSSGKYKGKKILFPKTGVIRPVMSIVREAFFSIIFK------DIINSKFLDVFAGTG 64
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF-V 226
+ +EA+SRG S H VE + S L+ N + V + + F +RAE F V
Sbjct: 65 IMSVEALSRGASLAHLVECNRKTKST-LVKNFSF-----VEEFY----KFFFQRAEDFLV 114
Query: 227 GKDGPFDYMSVTPPYT 242
KD +D++ + PP+
Sbjct: 115 KKDLFYDFIYLDPPFN 130
>gi|15888033|ref|NP_353714.1| conserved hypothetical protein [Agrobacterium fabrum str. C58]
gi|15155651|gb|AAK86499.1| conserved hypothetical protein [Agrobacterium fabrum str. C58]
Length = 185
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 12/164 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK +RP ++ + + F+IL A P SL R LD+++GTG+
Sbjct: 1 MRIVGGEFRGRTLAAPKSNSIRPTIDRTRESLFNILSHA--YPESLDGTRVLDVFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA+SRGC FVE + V L W +D +H R A + G
Sbjct: 59 VGLEALSRGCRVALFVE------NGVEGRGLLWEN-IDALGLHG-RARILRRDATKLGGV 110
Query: 229 DG--PFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKDR 270
+ PFD + PPY E T G L +++R
Sbjct: 111 NNIEPFDLLFADPPYGHGHGEKAFAAAHAGGWLTSGALAILEER 154
>gi|222056365|ref|YP_002538727.1| methyltransferase [Geobacter daltonii FRC-32]
gi|221565654|gb|ACM21626.1| methyltransferase [Geobacter daltonii FRC-32]
Length = 187
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 25/189 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ +KL SPK M VRP + VK + F+IL + L R LD+++GTGS
Sbjct: 1 MRIISGSAKGRKLASPKDMRVRPTADRVKESLFNILTN---LMDDLSAVRTLDIFAGTGS 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG + FV+ + + ++ NL+ GF + S + L E+
Sbjct: 58 LGIEMLSRGGAYAVFVD-NHRQSAAMIAKNLQMLGFAEKSRLMVEEALVALRLLER--QG 114
Query: 229 DGPFDYMSVTPPYT----------------AVDYEVV--EYPLRTDMLDTCGCLVKIKDR 270
DG FD + + PPY+ A D +V E+ ++ D+ G L + R
Sbjct: 115 DG-FDLIFLDPPYSKGHTEKILEFLSHSLLATDDTIVVAEFSVQEDIPAGFGQLQQFDRR 173
Query: 271 RFGRTHLAI 279
+G T LA
Sbjct: 174 VYGDTVLAF 182
>gi|297544767|ref|YP_003677069.1| methyltransferase [Thermoanaerobacter mathranii subsp. mathranii
str. A3]
gi|296842542|gb|ADH61058.1| methyltransferase [Thermoanaerobacter mathranii subsp. mathranii
str. A3]
Length = 184
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 91/190 (47%), Gaps = 28/190 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R +K+ S +G +VRP + VK + F+IL + + +LDL++GTG+
Sbjct: 1 MRVIAGKLRGRKIKSIEGSEVRPTADRVKESLFNILMN------KIEGSVFLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +FV+ V + N+ + + I V +E +Q
Sbjct: 55 IGIEALSRGAQFCYFVDKSLKSVKCIR-ENVAELNLIPFAKILHRDVLKVIEILDQ---N 110
Query: 229 DGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDR 270
+ FD + + PPY E + E+ + +T G LVKI++
Sbjct: 111 NTKFDIIFLDPPYYQNLAEKTLIKLGKAKLLKRGGIIIAEHHKNDKVKETYGNLVKIREN 170
Query: 271 RFGRTHLAIY 280
++G T L+ Y
Sbjct: 171 KYGETILSFY 180
>gi|404370900|ref|ZP_10976215.1| RsmD family RNA methyltransferase [Clostridium sp. 7_2_43FAA]
gi|226912978|gb|EEH98179.1| RsmD family RNA methyltransferase [Clostridium sp. 7_2_43FAA]
Length = 184
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 97/195 (49%), Gaps = 38/195 (19%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR +KL+ P M+ RP ++ VK A F I+Q G P ++ +D+++GTGS
Sbjct: 1 MRIIAGKARGRKLIPPATMETRPTLDRVKEAMFSIIQ--GYIPDAV----AVDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIP----NLEWTGFLDVSSIHTVRVETFLERAEQ 224
+G+EA SRG EV+ ++ SN P N+E F D + + ++++ A +
Sbjct: 55 LGLEAASRGAKEVYLIDK-----SNTTFPLLKQNIENLKFQDFCT--PLNMDSY--DALK 105
Query: 225 FVGKDGP-FDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLVK---------------- 266
+ K G FD + + PPY + E ++ +ML G +V
Sbjct: 106 MLNKKGKIFDIIFIDPPYCKEMIPEAIKIIKENNMLKENGIIVTKIDSIEEIYDGYKDIK 165
Query: 267 -IKDRRFGRTHLAIY 280
++ R++G T + Y
Sbjct: 166 LLQSRKYGNTTVCFY 180
>gi|221058393|ref|XP_002259842.1| methylase [Plasmodium knowlesi strain H]
gi|193809915|emb|CAQ41109.1| methylase, putative [Plasmodium knowlesi strain H]
Length = 400
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 29/210 (13%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++L + GK + +++ SP RPMM VK + F IL G S LD++SG+
Sbjct: 179 KILSIHEGKFKNRRIYSPDTY-TRPMMSKVKESLFSILSHLGIFSNS--TMNVLDVFSGS 235
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET--FLERAEQ 224
G++GIE ISR + V FV++ + NL+ +++S +R + L+ +
Sbjct: 236 GNLGIECISRDIAHVTFVDLSLNSCKTIY-ENLKLCN-INLSYNQIIRADAMELLKNPLK 293
Query: 225 F-VGKDGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDML-DTCGCL 264
F +G+ F TPPY + Y +EYP +ML +
Sbjct: 294 FHIGE--KFHLAFFTPPYEQIVYSELIQNISSSELFDRDSLVFIEYPKEIEMLPQRVYNM 351
Query: 265 VKIKDRRFGRTHLAIYGPDWAQKKRKSEKK 294
+ +++R+FGRT+ A+Y + + K +E+K
Sbjct: 352 IGLRNRKFGRTYFALYVLNSSGKYLSAERK 381
>gi|225552269|ref|ZP_03773209.1| putative methyltransferase [Borrelia sp. SV1]
gi|225371267|gb|EEH00697.1| putative methyltransferase [Borrelia sp. SV1]
Length = 178
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 17/135 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ V GK + KK+L PK VRP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 1 MYVSSGKYKGKKILFPKNGSVRPVMSLVREAFFSIIFK------DIVNSKFLDVFAGTGI 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ IEA+SRG S H VE + + L+ N + V + + F +RAE F+
Sbjct: 55 MSIEALSRGASLTHLVECNRK-IKITLVKNFNF-----VEEFY----KFFFQRAEDFLSK 104
Query: 228 KDGPFDYMSVTPPYT 242
KD +D++ + PP+
Sbjct: 105 KDLFYDFIYLDPPFN 119
>gi|418403585|ref|ZP_12977071.1| methyltransferase [Sinorhizobium meliloti CCNWSX0020]
gi|359502495|gb|EHK75071.1| methyltransferase [Sinorhizobium meliloti CCNWSX0020]
Length = 186
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK D+RP + + + F+IL A P +L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRTLAAPKSDDIRPTTDRTRESLFNILSHA--YPEALDGTRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
+G+EA+SRGC +V FVE +L N+E G R + F A V
Sbjct: 59 IGLEALSRGCRQVLFVEQGVE-GRGLLRINIEALGL-------QGRAKIFRRDATDLGPV 110
Query: 227 GKDGPFDYMSVTPPY 241
G PF + PPY
Sbjct: 111 GTMEPFHLVFADPPY 125
>gi|15964555|ref|NP_384908.1| hypothetical protein SMc00902 [Sinorhizobium meliloti 1021]
gi|334315268|ref|YP_004547887.1| methyltransferase [Sinorhizobium meliloti AK83]
gi|384528513|ref|YP_005712601.1| methyltransferase [Sinorhizobium meliloti BL225C]
gi|384534914|ref|YP_005718999.1| putative methyltransferase [Sinorhizobium meliloti SM11]
gi|407719667|ref|YP_006839329.1| hypothetical protein BN406_00458 [Sinorhizobium meliloti Rm41]
gi|433612568|ref|YP_007189366.1| RNA methyltransferase, RsmD family [Sinorhizobium meliloti GR4]
gi|15073733|emb|CAC45374.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|333810689|gb|AEG03358.1| methyltransferase [Sinorhizobium meliloti BL225C]
gi|334094262|gb|AEG52273.1| methyltransferase [Sinorhizobium meliloti AK83]
gi|336031806|gb|AEH77738.1| putative methyltransferase [Sinorhizobium meliloti SM11]
gi|407317899|emb|CCM66503.1| hypothetical protein BN406_00458 [Sinorhizobium meliloti Rm41]
gi|429550758|gb|AGA05767.1| RNA methyltransferase, RsmD family [Sinorhizobium meliloti GR4]
Length = 186
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK D+RP + + + F+IL A P +L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRTLAAPKSDDIRPTTDRARESLFNILSHA--YPEALDGTRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
+G+EA+SRGC +V FVE +L N+E G R + F A V
Sbjct: 59 IGLEALSRGCRQVLFVEQGVE-GRGLLRINIEALGL-------QGRAKIFRRDATDLGPV 110
Query: 227 GKDGPFDYMSVTPPY 241
G PF + PPY
Sbjct: 111 GTMEPFHLVFADPPY 125
>gi|337287802|ref|YP_004627274.1| methyltransferase [Thermodesulfobacterium sp. OPB45]
gi|334901540|gb|AEH22346.1| methyltransferase [Thermodesulfobacterium geofontis OPF15]
Length = 185
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 13/136 (9%)
Query: 109 LQVLGGKARRKKLLSP-KGMD-VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+Q+ GG + +KL+ P K +D +RP+ ++ A FDIL +L + LDL++GT
Sbjct: 1 MQITGGFLKGRKLVCPSKDLDFIRPLRTRIRKALFDILGQ------NLSDLKVLDLFAGT 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE-RAEQF 225
G++GIEAISRG S FV+ P +S ++ NLE LD + + + + L+ +++F
Sbjct: 55 GALGIEAISRGASFAVFVDNSPISIS-IIKKNLERFNLLDKAQVFKLDLPKGLKILSKKF 113
Query: 226 VGKDGPFDYMSVTPPY 241
FD + +TPPY
Sbjct: 114 ---QNFFDLVFITPPY 126
>gi|332981577|ref|YP_004463018.1| methyltransferase [Mahella australiensis 50-1 BON]
gi|332699255|gb|AEE96196.1| methyltransferase [Mahella australiensis 50-1 BON]
Length = 185
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 91/184 (49%), Gaps = 14/184 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG A+ KL PK VRP ++VK A F+IL + +LDL++GTGS
Sbjct: 1 MRITGGMAKGHKLSGPKSAGVRPTADIVKEALFNIL------APYIDETVFLDLFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA+SRG EV+FV+ V ++ N+ L +S + + + + K
Sbjct: 55 VGLEAMSRGAREVYFVDNKRQCV-QLIKSNVS---LLRMSDKAKIILADAIAAVDLLSRK 110
Query: 229 DGPFDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWAQK 287
FD + + PPY +V++ + D+L+ G LV +R R L + W+
Sbjct: 111 QVRFDIIFMDPPYEMGYISKVLKAIVSADILNRSGILVV---QRSKREALGLADVGWSTY 167
Query: 288 KRKS 291
K ++
Sbjct: 168 KERA 171
>gi|294782567|ref|ZP_06747893.1| RNA methyltransferase, RsmD family [Fusobacterium sp. 1_1_41FAA]
gi|294481208|gb|EFG28983.1| RNA methyltransferase, RsmD family [Fusobacterium sp. 1_1_41FAA]
Length = 182
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------APYVENSVFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EA+SRG +E D + +I N++ GF D + V RA + +G
Sbjct: 55 ISLEAVSRGAKRAVMIEKDGEALK-YIIENIDNLGFTDRCRAYKNDV----VRAVEILGR 109
Query: 228 KDGPFDYMSVTPPYT---------AVDYE---------VVEYPLRTDMLDTCGCLVKIKD 269
K FD + + PPY A+D + E+ L D+ D K +
Sbjct: 110 KKEKFDIIFMDPPYQDNITTKVLKAIDKADILADDGLIICEHHLFEDLEDNIASFRKTDE 169
Query: 270 RRFGRTHLAIY 280
R++ + L Y
Sbjct: 170 RKYNKKILTFY 180
>gi|378825079|ref|YP_005187811.1| methyltransferase [Sinorhizobium fredii HH103]
gi|365178131|emb|CCE94986.1| methyltransferase [Sinorhizobium fredii HH103]
Length = 185
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 71/136 (52%), Gaps = 14/136 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK D+RP + + + F+IL + P +L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRTLATPKSNDIRPTTDRTRESLFNILSHS--YPEALDGARMLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLI-PNLEWTGFLDVSSIHTVRVETFLERAEQF-- 225
VG+EA+SRGC + FVE V LI N+E G R + F A
Sbjct: 59 VGLEALSRGCRQALFVEQG--VEGRGLIRVNIEALGL-------QARAKIFRRDAVDLGT 109
Query: 226 VGKDGPFDYMSVTPPY 241
VG PF + PPY
Sbjct: 110 VGTMEPFHLVFADPPY 125
>gi|320354627|ref|YP_004195966.1| methyltransferase [Desulfobulbus propionicus DSM 2032]
gi|320123129|gb|ADW18675.1| methyltransferase [Desulfobulbus propionicus DSM 2032]
Length = 195
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 89/196 (45%), Gaps = 34/196 (17%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG AR +KLL+P+ +RP + V+ A F+IL S ++ R LDL++GTG+
Sbjct: 1 MRITGGSARGRKLLTPRSDRIRPTCDRVREALFNILGS------RIKGARVLDLFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEW------TGFLDVSSIHTVRVETFLERA 222
+G EA+SRG FV+ ++ NL FL + + + R
Sbjct: 55 IGTEALSRGAVFALFVDRS-LEAGRLIEANLRACLSHPRAAFLQLDLAESTSLHLLPARM 113
Query: 223 EQFVGKDGPFDYMSVTPPY------------------TAVDYEVVEYPLRTDMLDTCGCL 264
+Q V + FD + + PPY A VVE R + +T G L
Sbjct: 114 KQPVER---FDLVFMDPPYQKNLAHRALTMVEPADILAAGGLVVVEEHHRVSLPETVGTL 170
Query: 265 VKIKDRRFGRTHLAIY 280
V RR+G T L +Y
Sbjct: 171 VLDDHRRYGETGLWLY 186
>gi|374316432|ref|YP_005062860.1| RNA methyltransferase, RsmD family [Sphaerochaeta pleomorpha str.
Grapes]
gi|359352076|gb|AEV29850.1| RNA methyltransferase, RsmD family [Sphaerochaeta pleomorpha str.
Grapes]
Length = 186
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 89/188 (47%), Gaps = 29/188 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V GGK R + +L P G+ +RP M+ ++ + FDIL +L WLDL++G+G
Sbjct: 1 MRVTGGKYRGRTVLCPPGV-IRPAMDCMRESLFDIL-------GNLEGQSWLDLFTGSGC 52
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAE 223
VGIEA SRG S VH VE D +++N+ + E F+ DV R +R
Sbjct: 53 VGIEAASRGASPVHLVEKDRGKKATILNNIGMVESEIQLFMTDVR-----RFIPTAKRQY 107
Query: 224 QFVGKDGPFDYMSVTPPYTAVDYE---------VVEYPL--RTDMLDTCGCLVKIKDRRF 272
V D PF A+D ++ YP + D G L+ +R++
Sbjct: 108 DIVYADPPFPMDGKIELARAIDKAKLLTPGGLFIIHYPAEEKKDWPKEIGNLLCYDERKY 167
Query: 273 GRTHLAIY 280
GR+ L +
Sbjct: 168 GRSTLRFF 175
>gi|335035519|ref|ZP_08528860.1| hypothetical protein AGRO_2852 [Agrobacterium sp. ATCC 31749]
gi|333793286|gb|EGL64642.1| hypothetical protein AGRO_2852 [Agrobacterium sp. ATCC 31749]
Length = 185
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 12/164 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK +RP ++ + + F+IL A P SL R LD+++GTG+
Sbjct: 1 MRIVGGEFRGRTLAAPKSNSIRPTIDRTRESLFNILSHA--YPESLDGTRVLDVFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA+SRGC FVE + V L W +D +H R A + G
Sbjct: 59 VGLEALSRGCRVALFVE------NGVEGRGLLWEN-IDALGLHG-RARILRRDATKLGGV 110
Query: 229 DG--PFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKDR 270
+ PFD + PPY E T G L +++R
Sbjct: 111 NNIEPFDLLFADPPYGHGHGEKAFAAAHGGGWLTSGALAILEER 154
>gi|430002365|emb|CCF18146.1| Putative methyltransferase [Rhizobium sp.]
Length = 186
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 14/136 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK D+RP ++ + + F+I+ P +L+ R +DL++GTG+
Sbjct: 1 MRIVGGEFRGRTLAAPKSNDIRPTVDRTRESLFNIIGHV--YPEALQQTRVIDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA+SRGC + FVE ++V L W ++ R+ L R +G
Sbjct: 59 VGLEALSRGCRQALFVE------NSVEGRGLLWENIDHLALHGRARI---LRRDATKLGP 109
Query: 229 DG---PFDYMSVTPPY 241
+G PF+ + PPY
Sbjct: 110 NGTIEPFNLLFADPPY 125
>gi|373106314|ref|ZP_09520617.1| RsmD family RNA methyltransferase [Stomatobaculum longum]
gi|371652689|gb|EHO18097.1| RsmD family RNA methyltransferase [Stomatobaculum longum]
Length = 189
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 11/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L + G + RP + +K F++LQ+ P S R+LDL+ G+G
Sbjct: 1 MRVIAGNARRLLLKTLPGDETRPTTDRIKETLFNMLQAE--IPGS----RFLDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE +P + ++ NLE T D + + T+ + R G+
Sbjct: 55 IAIEALSRGASAAVIVEKNPK-AARIIRENLEHTHLDDRAELLTIDASAAITR---LAGR 110
Query: 229 D-GPFDYMSVTPPY 241
+ FD + + PPY
Sbjct: 111 ESAAFDLIFLDPPY 124
>gi|197118275|ref|YP_002138702.1| DNA methyltransferase [Geobacter bemidjiensis Bem]
gi|197087635|gb|ACH38906.1| DNA methyltransferase, putative [Geobacter bemidjiensis Bem]
Length = 193
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 31/192 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+AR ++L +PK M VRP + VK A F IL S G + R LD+++GTG+
Sbjct: 1 MRVIAGEARGRQLFAPKTMRVRPTSDRVKEALFSILLSRLGDLGGM---RVLDVFAGTGN 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET---FLERAEQF 225
+GIEA+SRG F++ + + NLE T F + + T +L R E+
Sbjct: 58 LGIEALSRGADCAVFIDAHRE-SAEAIRKNLETTRFTEKGKVVTQEAAAALKWLARGEK- 115
Query: 226 VGKDGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKI 267
PF + + PPY E V E+ + ++ + G L +I
Sbjct: 116 -----PFHLVFLDPPYGEGHTERVLELLSSSPLIDAGSTVVAEFAAKEEIPRSFGRLTEI 170
Query: 268 KDRRFGRTHLAI 279
+ R +G T L+
Sbjct: 171 ERRVYGDTALSF 182
>gi|19704664|ref|NP_604226.1| methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
gi|19714972|gb|AAL95525.1| Methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
Length = 182
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ A S+ +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII--APYIEGSI----FLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EAISRG +E D + +I N++ GF D + V RA + +G
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEALK-YIIENIDNLGFSDRCRAYKNDV----IRAIEILGR 109
Query: 228 KDGPFDYMSVTPPYT---------AVDYE---------VVEYPLRTDMLDTCGCLVKIKD 269
K+ FD + + PPY A+D + E+ L D+ D K +
Sbjct: 110 KNEKFDIIFMDPPYQDNVTKKVLKAIDKANILAEDGLIICEHHLLEDLEDNIVSFRKTDE 169
Query: 270 RRFGRTHLAIY 280
R++ + L Y
Sbjct: 170 RKYNKKILTFY 180
>gi|354558650|ref|ZP_08977904.1| methyltransferase [Desulfitobacterium metallireducens DSM 15288]
gi|353545712|gb|EHC15162.1| methyltransferase [Desulfitobacterium metallireducens DSM 15288]
Length = 181
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 73/133 (54%), Gaps = 13/133 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R +KL + GMD RP + VKGA F++L+ ++ R LDL++GTG+
Sbjct: 1 MRIIAGEMRGRKLKTVSGMDTRPTADKVKGAIFNVLRE------KVQDARVLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+S+G EV VE + V+ NL G + ++++ FL++
Sbjct: 55 LALEALSQGAQEVVLVE-KAYTAQKVIQENLTLIGEAQ-AKLYSMDAFEFLKQY-----P 107
Query: 229 DGPFDYMSVTPPY 241
+ FD + + PPY
Sbjct: 108 EARFDLIFLDPPY 120
>gi|340754747|ref|ZP_08691483.1| RsmD family RNA methyltransferase [Fusobacterium sp. D12]
gi|421500014|ref|ZP_15947037.1| RNA methyltransferase, RsmD family [Fusobacterium necrophorum
subsp. funduliforme Fnf 1007]
gi|313685756|gb|EFS22591.1| RsmD family RNA methyltransferase [Fusobacterium sp. D12]
gi|402269115|gb|EJU18461.1| RNA methyltransferase, RsmD family [Fusobacterium necrophorum
subsp. funduliforme Fnf 1007]
Length = 182
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+AR +KL + KG + RP + VK A F I+ L +LDL+SG+G+
Sbjct: 1 MRIIAGEARSRKLKTRKGFETRPTLANVKEALFSII------APHLEESIFLDLFSGSGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG +E D + +I N+ G+ D + + F RA + + +
Sbjct: 55 IALEALSRGAKRAVMIEKDAEAL-RFIIENVNTLGYQD--RCRAYKNDVF--RAIEILAR 109
Query: 229 DGP-FDYMSVTPPY-----TAVDYE-------------VVEYPLRTDMLDTCGCLVKIKD 269
G F+ + + PPY T V + + E+ DM D G K+ +
Sbjct: 110 KGEKFNIIFMDPPYQDNVCTKVLEQIDNCGILEEEGIIICEHHAFEDMADQVGSFQKVDE 169
Query: 270 RRFGRTHLAIY 280
RR+ + + Y
Sbjct: 170 RRYQKKVITFY 180
>gi|260437135|ref|ZP_05790951.1| RNA methyltransferase, RsmD family [Butyrivibrio crossotus DSM
2876]
gi|292810447|gb|EFF69652.1| RNA methyltransferase, RsmD family [Butyrivibrio crossotus DSM
2876]
Length = 183
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 13/135 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTG 167
++V+ G R L +P GMD RP + K F++LQ+ PG +LDL++G+G
Sbjct: 1 MRVIAGTRRSMPLKAPVGMDTRPTQDRTKETLFNVLQNE-------IPGAEFLDLFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++ IEA+SRG S VE + VS + NL +T F D +++ +ET + A +G
Sbjct: 54 AISIEALSRGASHATLVENNKNAVS-CIKDNLIFTKFSDEATL----METDVMAALYKLG 108
Query: 228 KDGPFDYMSVTPPYT 242
FD + + PPY
Sbjct: 109 GHKEFDIVFMDPPYN 123
>gi|336434857|ref|ZP_08614577.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
1_4_56FAA]
gi|336003567|gb|EGN33650.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
1_4_56FAA]
Length = 189
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 80/145 (55%), Gaps = 14/145 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+R +L + +GMD RP + +K F+++ L +LDL++G+G
Sbjct: 1 MRVIAGSAKRLQLKTLEGMDTRPTTDRIKETLFNMISPG------LFDSMFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR-VETFLERAEQFVG 227
+GIEA+SRG E FVE + ++ V NL++T LD I + V T L + E
Sbjct: 55 IGIEALSRGAKEAVFVEQNSKAMACVR-DNLKYTK-LDRKGITLTKDVMTALYQLEG--- 109
Query: 228 KDGPFDYMSVTPPY-TAVDYEVVEY 251
+ FDY+ + PPY ++ V+EY
Sbjct: 110 -EKVFDYIFMDPPYHMGLERRVMEY 133
>gi|291007089|ref|ZP_06565062.1| methyltransferase (methylase) [Saccharopolyspora erythraea NRRL
2338]
Length = 193
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 92/200 (46%), Gaps = 35/200 (17%)
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
V G R+ + P+G RP E V+ A F L+SA L R LDLY G+G++G
Sbjct: 5 VAGSAGGRRIEVPPRG--TRPTSERVREALFSALESA----TELAGARVLDLYGGSGALG 58
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
+EA+SRG + FVE D V +L N GF DV S+ +VET L A G+
Sbjct: 59 LEALSRGAAHATFVESDRRAV-QLLRRNASALGFRDV-SVAQGKVETVLASA---AGE-- 111
Query: 231 PFDYMSVTPPY-------------------TAVD-YEVVEYPLRTDMLDTCGCLVKIKDR 270
PFD + PPY TA D VVE R+ D L ++ +
Sbjct: 112 PFDVVLADPPYDVDAARLDQVLRSLAANGWTAPDSLVVVERSTRSGEPDWPAPLRALRTK 171
Query: 271 RFGRT--HLAIYGPDWAQKK 288
R+G T H A++ D A +
Sbjct: 172 RYGDTAVHWAVHEADAAGSQ 191
>gi|403224311|dbj|BAM42441.1| uncharacterized protein TOT_040000808 [Theileria orientalis strain
Shintoku]
Length = 315
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 96/202 (47%), Gaps = 26/202 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L++ GG R +KL P + VRP+M VK + F+ L+S + +DLY GTGS
Sbjct: 86 LRICGGSIRGRKLCIPP-VYVRPVMSRVKISVFNFLRSLSLFSID-KTTNVIDLYCGTGS 143
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF-LERAEQFVG 227
+G+E++S G + FV++ + V + ++ GF D I +R ++ L +
Sbjct: 144 LGLESLSYGSHKCTFVDISLKCLKAVNLNTIK-CGFQDKCRI--IRSDSIELINSPYLYN 200
Query: 228 KDGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTC--GCLVKI 267
+ FD M V PPY V Y VVEYP L L +
Sbjct: 201 INEKFDLMFVAPPYEEVIYSDLLQYISECKILNDNAIVVVEYPKELSFLPHVINDKLFGV 260
Query: 268 KDRRFGRTHLAIYGPDWAQKKR 289
K++++GRT +A+Y + ++ +R
Sbjct: 261 KNKKYGRTVIAMYLFNPSENRR 282
>gi|163840525|ref|YP_001624930.1| methyltransferase [Renibacterium salmoninarum ATCC 33209]
gi|162954001|gb|ABY23516.1| methyltransferase [Renibacterium salmoninarum ATCC 33209]
Length = 194
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 85/162 (52%), Gaps = 14/162 (8%)
Query: 110 QVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169
+++ G A + L+S G RP + VK A F L++ G L+ + LDLY+G+G++
Sbjct: 3 RIIAGAAGGQTLVSVPGTGTRPTTDRVKEALFSRLEAMG----VLKESKVLDLYAGSGAL 58
Query: 170 GIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS---IHTVRVETFLERAEQFV 226
G+E+ SRG ++V VE+D + V N + + + ++ +VE FL+RA+
Sbjct: 59 GLESASRGAAKVDLVELDARAAA-VCQRNADLVNSVTAAGTVRVNRAKVEQFLQRAK--- 114
Query: 227 GKDGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIK 268
GP+D + + PPY + E+ E L + G +V ++
Sbjct: 115 ---GPWDLVFLDPPYPLTEDELAEVLLALGSALSEGAVVVVE 153
>gi|300854457|ref|YP_003779441.1| hypothetical protein CLJU_c12710 [Clostridium ljungdahlii DSM
13528]
gi|300434572|gb|ADK14339.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528]
Length = 186
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 77/134 (57%), Gaps = 11/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++++ G AR +KL+SP G ++ RP ++ VK A F+I+Q+ + + LD+++GTG
Sbjct: 1 MRIIAGLARGRKLMSPNGYNITRPTLDRVKEAMFNIIQN------RVYGSKVLDVFAGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
S+G+EA SRG + + V+ L N+E GF ++ T+ +++ E ++
Sbjct: 55 SLGLEAASRGAEKCYLVDRSSDTFY-FLDKNVENLGFSNICK--TINKDSY-EALQELSR 110
Query: 228 KDGPFDYMSVTPPY 241
K+ FD + + PPY
Sbjct: 111 KNLMFDIIFIDPPY 124
>gi|418296514|ref|ZP_12908357.1| hypothetical protein ATCR1_03304 [Agrobacterium tumefaciens
CCNWGS0286]
gi|355538689|gb|EHH07931.1| hypothetical protein ATCR1_03304 [Agrobacterium tumefaciens
CCNWGS0286]
Length = 185
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK +RP ++ + + F+IL A P SL R LD+++GTG+
Sbjct: 1 MRIVGGEFRGRTLAAPKSNSIRPTIDRTRESLFNILSHA--YPESLDGTRVLDVFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA+SRGC FVE + V L W +D +H R A + G
Sbjct: 59 VGLEALSRGCRVALFVE------NGVEGRGLLWEN-IDALGLHG-RARILRRDATKLGGV 110
Query: 229 DG--PFDYMSVTPPY 241
+ PFD + PPY
Sbjct: 111 NNIEPFDLLFADPPY 125
>gi|114569168|ref|YP_755848.1| putative methyltransferase [Maricaulis maris MCS10]
gi|114339630|gb|ABI64910.1| putative methyltransferase [Maricaulis maris MCS10]
Length = 186
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 5/133 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L++PKG RP + + F++++ A CPA + R D+Y+G+G+
Sbjct: 1 MRIVGGKFRNRALVAPKGKSTRPTSDRARENMFNVIEHADWCPA-IEGARVADIYAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EAISRG + F+E + N++ ++ IH R T L +G
Sbjct: 60 LGLEAISRGAAFCLFIEFAA-EARGAIRDNVDTLQLFGITRIHR-RDATALGDKPSNLGD 117
Query: 229 DGPFDYMSVTPPY 241
PF+ + + PPY
Sbjct: 118 --PFNLVFLDPPY 128
>gi|216264731|ref|ZP_03436723.1| putative methyltransferase [Borrelia burgdorferi 156a]
gi|218249780|ref|YP_002374732.1| methyltransferase [Borrelia burgdorferi ZS7]
gi|221217524|ref|ZP_03588994.1| putative methyltransferase [Borrelia burgdorferi 72a]
gi|223889261|ref|ZP_03623849.1| putative methyltransferase [Borrelia burgdorferi 64b]
gi|224534074|ref|ZP_03674657.1| putative methyltransferase [Borrelia burgdorferi CA-11.2a]
gi|225549786|ref|ZP_03770750.1| putative methyltransferase [Borrelia burgdorferi 118a]
gi|215981204|gb|EEC22011.1| putative methyltransferase [Borrelia burgdorferi 156a]
gi|218164968|gb|ACK75029.1| putative methyltransferase [Borrelia burgdorferi ZS7]
gi|221192587|gb|EEE18804.1| putative methyltransferase [Borrelia burgdorferi 72a]
gi|223885294|gb|EEF56396.1| putative methyltransferase [Borrelia burgdorferi 64b]
gi|224512773|gb|EEF83141.1| putative methyltransferase [Borrelia burgdorferi CA-11.2a]
gi|225369594|gb|EEG99043.1| putative methyltransferase [Borrelia burgdorferi 118a]
Length = 189
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 17/136 (12%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ V GK + KK+L PK VRP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 11 FMYVSSGKYKGKKILFPKNGSVRPVMSLVREAFFSIIFK------DIVNSKFLDVFAGTG 64
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ +EA+SRG S H VE + + L+ N + V + + F +RAE F+
Sbjct: 65 IMSVEALSRGASLAHLVECNRK-IKITLVENFSF-----VEEFY----KFFFQRAEDFLS 114
Query: 228 -KDGPFDYMSVTPPYT 242
KD +D++ + PP+
Sbjct: 115 KKDLFYDFIYLDPPFN 130
>gi|418410794|ref|ZP_12984099.1| methyltransferase [Agrobacterium tumefaciens 5A]
gi|358002913|gb|EHJ95249.1| methyltransferase [Agrobacterium tumefaciens 5A]
Length = 185
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK +RP ++ + + F+IL A P SL R LD+++GTG+
Sbjct: 1 MRIVGGEFRGRNLAAPKTNSIRPTIDRTRESLFNILSHA--YPESLDGTRVLDVFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA+SRGC FVE + V L W +D +H R A + G
Sbjct: 59 VGLEALSRGCRVALFVE------NGVEGRGLLWEN-IDALGLHG-RARILRRDATKLGGV 110
Query: 229 DG--PFDYMSVTPPY 241
+ PFD + PPY
Sbjct: 111 NNIEPFDLLFADPPY 125
>gi|315500442|ref|YP_004089245.1| methyltransferase [Asticcacaulis excentricus CB 48]
gi|315418454|gb|ADU15094.1| methyltransferase [Asticcacaulis excentricus CB 48]
Length = 192
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +P+G + RP + + A F+IL+ A P +L R +D+++G+G+
Sbjct: 1 MRIVGGEFRGRALSAPEGQNTRPTSDRARQAVFNILEHAEFAP-NLNGARVMDVFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + FV+ D + N+E G V+ IH R G
Sbjct: 60 LGLEAMSRGAAFCLFVDTDD-AARGAIRDNVEAFGLFGVTRIHRRDATQLGVRPG---GA 115
Query: 229 DGPFDYMSVTPPY 241
FD + + PPY
Sbjct: 116 SEAFDLVFMDPPY 128
>gi|34763572|ref|ZP_00144507.1| METHYLTRANSFERASE [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
gi|237742322|ref|ZP_04572803.1| methyltransferase [Fusobacterium sp. 4_1_13]
gi|256845601|ref|ZP_05551059.1| RsmD family RNA methyltransferase [Fusobacterium sp. 3_1_36A2]
gi|294785110|ref|ZP_06750398.1| RNA methyltransferase, RsmD family [Fusobacterium sp. 3_1_27]
gi|421145506|ref|ZP_15605372.1| methyltransferase [Fusobacterium nucleatum subsp. fusiforme ATCC
51190]
gi|27886761|gb|EAA23899.1| METHYLTRANSFERASE [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
gi|229429970|gb|EEO40182.1| methyltransferase [Fusobacterium sp. 4_1_13]
gi|256719160|gb|EEU32715.1| RsmD family RNA methyltransferase [Fusobacterium sp. 3_1_36A2]
gi|294486824|gb|EFG34186.1| RNA methyltransferase, RsmD family [Fusobacterium sp. 3_1_27]
gi|395488092|gb|EJG08981.1| methyltransferase [Fusobacterium nucleatum subsp. fusiforme ATCC
51190]
Length = 182
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------APYIEGSVFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EAISRG +E D + +I N++ GF D + V RA + +G
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEALK-YIIENIDNLGFSDRCRAYKNDV----IRAIEILGR 109
Query: 228 KDGPFDYMSVTPPYT---------AVDYE---------VVEYPLRTDMLDTCGCLVKIKD 269
K+ FD + + PPY +D + E+ L D+ D K +
Sbjct: 110 KNEKFDIIFMDPPYQDNVTKKVLKVIDKANILAEDGLIICEHHLLEDLEDNIASFRKTDE 169
Query: 270 RRFGRTHLAIY 280
R++ + L Y
Sbjct: 170 RKYNKKILTFY 180
>gi|325292074|ref|YP_004277938.1| methyltransferase [Agrobacterium sp. H13-3]
gi|325059927|gb|ADY63618.1| methyltransferase [Agrobacterium sp. H13-3]
Length = 185
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK +RP ++ + + F+IL A P SL R LD+++GTG+
Sbjct: 1 MRIVGGEFRGRNLAAPKTNSIRPTIDRTRESLFNILSHA--YPESLDGTRVLDVFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA+SRGC FVE + V L W +D +H R A + G
Sbjct: 59 VGLEALSRGCRVALFVE------NGVEGRGLLWEN-IDALGLHG-RARILRRDATKLGGV 110
Query: 229 DG--PFDYMSVTPPY 241
+ PFD + PPY
Sbjct: 111 NNIEPFDLLFADPPY 125
>gi|422317032|ref|ZP_16398401.1| RsmD family RNA methyltransferase [Fusobacterium periodonticum D10]
gi|404590303|gb|EKA92750.1| RsmD family RNA methyltransferase [Fusobacterium periodonticum D10]
Length = 182
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------APYIENSVFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EA+SRG +E D + +I N++ GF D + V RA + +G
Sbjct: 55 ISLEAVSRGAKRAVMIEKDGEALK-YIIENIDNLGFTDRCRAYKNDV----VRAVEILGR 109
Query: 228 KDGPFDYMSVTPPYT---------AVDYE---------VVEYPLRTDMLDTCGCLVKIKD 269
K FD + + PPY A+D + E+ L D+ D K +
Sbjct: 110 KKEKFDIIFMDPPYQDNITTKVLKAIDKADILSDDGLIICEHHLFEDLEDNIASFRKTDE 169
Query: 270 RRFGRTHLAIY 280
R++ + L +
Sbjct: 170 RKYNKKILTFF 180
>gi|296270744|ref|YP_003653376.1| methyltransferase [Thermobispora bispora DSM 43833]
gi|296093531|gb|ADG89483.1| methyltransferase [Thermobispora bispora DSM 43833]
Length = 189
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 16/165 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A+ ++L P G D RP + + F + S G +L R LDLY+G+G
Sbjct: 1 MTRVIAGLAKGRRLTVPPGKDTRPTSDRAREGLFATVLSVLG---TLEGVRVLDLYAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER--AEQF 225
+VG+EA+SRG V VE DP + + N+E G L + + +VE + R AE
Sbjct: 58 AVGLEALSRGAEHVLLVEADP-RAARAIRANIEAVG-LPGAVLRQEKVERLVRRRCAE-- 113
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVVE--YPLRTDMLDTCGCLVKIK 268
P+ ++ PPY+ D +V+E LR + G LV ++
Sbjct: 114 -----PYGFVYADPPYSLPDEQVIEVLIALRDNGWLAGGALVAVE 153
>gi|406705697|ref|YP_006756050.1| RsmD family RNA methyltransferase [alpha proteobacterium HIMB5]
gi|406651473|gb|AFS46873.1| RNA methyltransferase, RsmD family [alpha proteobacterium HIMB5]
Length = 186
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 51/77 (66%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + KK+L PK RP+ ++VK + F++L+ + S++ LDL++G+GS
Sbjct: 1 MRVISGKLKGKKILLPKDNLTRPLRDLVKESIFNLLEHSNKLNISIKNANVLDLFAGSGS 60
Query: 169 VGIEAISRGCSEVHFVE 185
G+E ISRG +V FVE
Sbjct: 61 FGLEIISRGAEKVTFVE 77
>gi|421590335|ref|ZP_16035353.1| methylase [Rhizobium sp. Pop5]
gi|403704531|gb|EJZ20390.1| methylase [Rhizobium sp. Pop5]
Length = 186
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK D+RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNDIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHG-RTRMLRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPY 241
G PFD + PPY
Sbjct: 111 GNLEPFDVLFADPPY 125
>gi|297559190|ref|YP_003678164.1| methyltransferase [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
gi|296843638|gb|ADH65658.1| methyltransferase [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
Length = 193
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 73/145 (50%), Gaps = 15/145 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G A +++ P+G + RP + + A F +QS G SL R +DLY+G+G
Sbjct: 1 MTRIIAGTAGGRRISVPEGRNTRPTSDRAREALFSSVQSDLG---SLDGARVMDLYAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++G+EA+SRG + VE D + VL N++ G + +R E+ VG
Sbjct: 58 AIGLEALSRGAAHALLVEADR-RAAQVLRDNIQTLGLPGARLVA--------DRVERVVG 108
Query: 228 KDG---PFDYMSVTPPYTAVDYEVV 249
D P+D + PPY D EV
Sbjct: 109 ADNTGDPYDVVVADPPYAVTDAEVA 133
>gi|86356482|ref|YP_468374.1| methylase [Rhizobium etli CFN 42]
gi|86280584|gb|ABC89647.1| putative methylase protein [Rhizobium etli CFN 42]
Length = 186
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK D+RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNDIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHG-RTRILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPY 241
G PFD + PPY
Sbjct: 111 GNLEPFDVLFADPPY 125
>gi|188587596|ref|YP_001920574.1| RNA methyltransferase, RsmD family [Clostridium botulinum E3 str.
Alaska E43]
gi|188497877|gb|ACD51013.1| RNA methyltransferase, RsmD family [Clostridium botulinum E3 str.
Alaska E43]
Length = 185
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 96/198 (48%), Gaps = 42/198 (21%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR +KL+ P M+ RP ++ VK A F ++Q G P S +D+++GTGS
Sbjct: 1 MRIISGKARGRKLIPPASMETRPTLDRVKEAMFSMIQ--GYIPDS----NVIDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFV----EMDPWVVSNVLIPNLEWTGF---LDVSSIHTVRVETFLER 221
+G+EA SRG EV+ + E P + N I NL++ F L++ S +R
Sbjct: 55 LGLEAASRGAKEVYLIDKSSETFPLLKEN--IKNLKFDDFCFGLNMDSYEALR------- 105
Query: 222 AEQFVGKDGPFDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLV-KI------------ 267
+ + F+ + + PPY + E ++ ++L G ++ KI
Sbjct: 106 --KLSNQGKVFELIFIDPPYCKEMIPEAIKIIKENNILSENGIIITKIDTIEEIYDGYED 163
Query: 268 ----KDRRFGRTHLAIYG 281
K R++G T + YG
Sbjct: 164 IFLRKSRKYGNTTVCFYG 181
>gi|160939086|ref|ZP_02086437.1| hypothetical protein CLOBOL_03980 [Clostridium bolteae ATCC
BAA-613]
gi|158438049|gb|EDP15809.1| hypothetical protein CLOBOL_03980 [Clostridium bolteae ATCC
BAA-613]
Length = 185
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 13/145 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L + G+D RP + +K F++LQ L +LDL+SG+G+
Sbjct: 1 MRVIAGSARRLLLKTLDGLDTRPTTDRIKETLFNMLQ------PELADCMFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +E +P + + NL T + + + V T L+R E GK
Sbjct: 55 IGIEALSRGAGLAVMIENNPKALECIR-ENLSRTKLEERAMVMGCDVITGLKRLE---GK 110
Query: 229 DGPFDYMSVTPPYTAVDYE--VVEY 251
+ FD + + PPY +YE V++Y
Sbjct: 111 NYKFDIVFMDPPYNH-EYERLVLDY 134
>gi|89898678|ref|YP_515788.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
gi|89332050|dbj|BAE81643.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
Length = 187
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 70/143 (48%), Gaps = 22/143 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + +RP VVK A F+I C A + +LDL+SG GS
Sbjct: 1 MKILAGKYKGKSLKTFSNSSIRPTCGVVKEAVFNI------CSAYVENALFLDLFSGVGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVV------SNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
+G EA+SRG S V FV+ V S ++ P+L T I V + ++R
Sbjct: 55 IGFEALSRGASSVTFVDSSAQAVRLIRANSQLINPDLPIT-------IMKHEVRSAIQRL 107
Query: 223 EQFVGKDGPFDYMSVTPPYTAVD 245
+ KD FD + + PPY D
Sbjct: 108 AK---KDMSFDLIYLDPPYDLED 127
>gi|424909578|ref|ZP_18332955.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392845609|gb|EJA98131.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
viciae USDA 2370]
Length = 185
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK +RP ++ + + F+IL A P SL R LD+++GTG+
Sbjct: 1 MRIVGGEFRGRSLAAPKTNSIRPTIDRTRESLFNILSHA--YPESLDGTRVLDVFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA+SRGC FVE + V L W +D +H R A + G
Sbjct: 59 VGLEALSRGCRVALFVE------NGVEGRGLLWEN-IDALGLHG-RARILRRDATKLGGV 110
Query: 229 DG--PFDYMSVTPPY 241
+ PFD + PPY
Sbjct: 111 NNIEPFDLLFADPPY 125
>gi|253573471|ref|ZP_04850814.1| RsmD family RNA methyltransferase [Paenibacillus sp. oral taxon 786
str. D14]
gi|251846999|gb|EES75004.1| RsmD family RNA methyltransferase [Paenibacillus sp. oral taxon 786
str. D14]
Length = 200
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 28/193 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+AR + L + GM RP + VK A F ++ G LDL++GTG
Sbjct: 1 MRVISGRARGRSLKAVPGMGTRPTTDKVKEAIFSMIGP------YFDGGSALDLFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + F++ D + + NL+ TGF ++ ++ E L + +
Sbjct: 55 LGIEALSRGMDKAVFIDKDFKSIETIR-QNLKATGFETMAEVYKNDAERAL---KALAKR 110
Query: 229 DGPFDYMSVTPPY---------TAVDYE---------VVEYPLRTDMLDTCGCLVKIKDR 270
+ FD + + PPY T +D V+EY + G V+I+
Sbjct: 111 EASFDLVFLDPPYRLKHGDALMTQMDELQLLKPEATIVLEYEASYVYPERFGPFVQIRKA 170
Query: 271 RFGRTHLAIYGPD 283
+G T ++IY D
Sbjct: 171 EYGETSVSIYTYD 183
>gi|169335591|ref|ZP_02862784.1| hypothetical protein ANASTE_02006 [Anaerofustis stercorihominis DSM
17244]
gi|169258329|gb|EDS72295.1| RNA methyltransferase, RsmD family [Anaerofustis stercorihominis
DSM 17244]
Length = 186
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 89/170 (52%), Gaps = 24/170 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R L +PK VRP + +K F+I+ P SL +LDL++G+G+
Sbjct: 7 MRVIAGKMRGTNLENPKDRRVRPTTDRIKEDLFNIIMPY--IPDSL----FLDLFAGSGA 60
Query: 169 VGIEAISRGCSEVHFVE--MDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
+GIEAISRGC + FV+ MD + ++ N++ T +D S++ +F+ +
Sbjct: 61 IGIEAISRGCKKSIFVDNNMDSF---RLIKKNIKKTKCIDQSTVIKKDAISFVNTTKD-- 115
Query: 227 GKDGPFDYMSVTPPYTAVDYE----VVEYPLRTDMLDTCGCLVKIKDRRF 272
FD + + PPY +YE ++E ++ D+L G L+ D+
Sbjct: 116 ----KFDVIFLDPPY---NYEKLKNLIENIVKCDILCKDGILIVEHDKNI 158
>gi|91202800|emb|CAJ72439.1| similar to protein relase factor 2 methylase (HemK) [Candidatus
Kuenenia stuttgartiensis]
Length = 198
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 74/143 (51%), Gaps = 22/143 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRP-GRWLDLYSGTG 167
++V+ G A+ L SPKG RP+ + VK + F+IL A + P R LDLY+GTG
Sbjct: 1 MRVIAGSAKGILLCSPKGNKTRPIPDNVKESLFNIL-------AEIIPDSRVLDLYAGTG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET-----FLERA 222
+VGIEA+SRG FVE + + ++ N+ T L+ S TVR + FLE+
Sbjct: 54 AVGIEALSRGAKSCLFVENGTFAIQSIK-KNISATKLLNKSV--TVRCDVLKTIPFLEQ- 109
Query: 223 EQFVGKDGPFDYMSVTPPYTAVD 245
DG D + PPY D
Sbjct: 110 ----NTDG-IDIVFACPPYPLAD 127
>gi|296005514|ref|XP_002809077.1| N6-adenine-specific methylase, putative [Plasmodium falciparum 3D7]
gi|225632021|emb|CAX64358.1| N6-adenine-specific methylase, putative [Plasmodium falciparum 3D7]
Length = 561
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 33/198 (16%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAG---GCPASLRPGRWLDLY 163
++L +L G + K+L SP RPMM VK + F+IL G ++ LD++
Sbjct: 339 KILSILEGTLKNKRLYSPDTY-TRPMMSKVKESIFNILTHLNILNGYNINV-----LDVF 392
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET--FLER 221
+G+G++GIE ISR V FV++ V NL D + +R + L+
Sbjct: 393 TGSGNLGIECISRDVKNVTFVDLSLNSCRTVF-ENLRLCNIYDTNK-KIIRADAMELLQN 450
Query: 222 AEQFVGKDGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDML-DTCG 262
+F + ++ TPPY + Y +EYP ++L G
Sbjct: 451 PYKFNVHE-KYNLGFFTPPYEQIIYSDLIHNISNSKLFEEDGLIFIEYPKEINLLPKKVG 509
Query: 263 CLVKIKDRRFGRTHLAIY 280
L+ +++R+FGRT+ +Y
Sbjct: 510 NLIGLRNRKFGRTYYTLY 527
>gi|405377184|ref|ZP_11031129.1| RNA methyltransferase, RsmD family [Rhizobium sp. CF142]
gi|397326281|gb|EJJ30601.1| RNA methyltransferase, RsmD family [Rhizobium sp. CF142]
Length = 186
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK D+RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNDIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A +
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHG-RTRILRRDATDLGSI 110
Query: 227 GKDGPFDYMSVTPPY 241
G PFD + PPY
Sbjct: 111 GNLEPFDMLFADPPY 125
>gi|300088242|ref|YP_003758764.1| methyltransferase [Dehalogenimonas lykanthroporepellens BL-DC-9]
gi|299527975|gb|ADJ26443.1| methyltransferase [Dehalogenimonas lykanthroporepellens BL-DC-9]
Length = 188
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 91/193 (47%), Gaps = 36/193 (18%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW---LDLYSG 165
++++ G + + + P RP E+V+GA F +L A+L W LDL+SG
Sbjct: 4 MRIIAGDCKGRPIKVPDRKSTRPATELVRGAIFSML-------ANLTED-WDEVLDLFSG 55
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+GS+GIEA+SRG V FVE +++ NL G + + +H V V E+A F
Sbjct: 56 SGSLGIEALSRGAGHVDFVEQGR-DCCDIIRANLRACGVEESARVHCVPV----EKAVGF 110
Query: 226 VGKDGPFDYMSVTPPYTAVD------------------YEVVEYPLRTDMLDTCGCLVKI 267
+GK +D + + PPY D + V+ + R + G L
Sbjct: 111 LGK--TYDVILMDPPYRREDIGELLEKMSGTELIGPHTWLVITHSPRVTLDSAYGPLALY 168
Query: 268 KDRRFGRTHLAIY 280
K+RR G + +AIY
Sbjct: 169 KERRHGDSVIAIY 181
>gi|134102544|ref|YP_001108205.1| methyltransferase (methylase) [Saccharopolyspora erythraea NRRL
2338]
gi|133915167|emb|CAM05280.1| possible methyltransferase (methylase) [Saccharopolyspora erythraea
NRRL 2338]
Length = 208
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 92/200 (46%), Gaps = 35/200 (17%)
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
V G R+ + P+G RP E V+ A F L+SA L R LDLY G+G++G
Sbjct: 20 VAGSAGGRRIEVPPRG--TRPTSERVREALFSALESA----TELAGARVLDLYGGSGALG 73
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
+EA+SRG + FVE D V +L N GF DV S+ +VET L A G+
Sbjct: 74 LEALSRGAAHATFVESDRRAV-QLLRRNASALGFRDV-SVAQGKVETVLASA---AGE-- 126
Query: 231 PFDYMSVTPPY-------------------TAVD-YEVVEYPLRTDMLDTCGCLVKIKDR 270
PFD + PPY TA D VVE R+ D L ++ +
Sbjct: 127 PFDVVLADPPYDVDAARLDQVLRSLAANGWTAPDSLVVVERSTRSGEPDWPAPLRALRTK 186
Query: 271 RFGRT--HLAIYGPDWAQKK 288
R+G T H A++ D A +
Sbjct: 187 RYGDTAVHWAVHEADAAGSQ 206
>gi|213964420|ref|ZP_03392620.1| RNA methyltransferase, RsmD family [Corynebacterium amycolatum
SK46]
gi|213952613|gb|EEB63995.1| RNA methyltransferase, RsmD family [Corynebacterium amycolatum
SK46]
Length = 188
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G+AR ++L++PKG RP + K A F + G + R LDL++G+G
Sbjct: 1 MTRIIAGEARGRRLVAPKGETTRPTSDRAKEAIFSSWSTRFGLEGT----RVLDLFAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++G+EA SRG V VE DP ++ + N+ G DV ++ ++V ++L G
Sbjct: 57 ALGLEAASRGARSVVLVENDPNAIAAIE-KNIRTVGHPDV-AVSPMKVSSYL------AG 108
Query: 228 KDG-PFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKDRR 271
G PFD + PPY V E G +V ++ R
Sbjct: 109 APGEPFDRVIADPPYELAGEAVTEMLEALRSFLAPGAVVTVERHR 153
>gi|168180623|ref|ZP_02615287.1| putative methyltransferase [Clostridium botulinum NCTC 2916]
gi|226949847|ref|YP_002804938.1| putative methyltransferase [Clostridium botulinum A2 str. Kyoto]
gi|421836110|ref|ZP_16270689.1| putative methyltransferase [Clostridium botulinum CFSAN001627]
gi|182668549|gb|EDT80528.1| putative methyltransferase [Clostridium botulinum NCTC 2916]
gi|226841020|gb|ACO83686.1| putative methyltransferase [Clostridium botulinum A2 str. Kyoto]
gi|409742094|gb|EKN41627.1| putative methyltransferase [Clostridium botulinum CFSAN001627]
Length = 185
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 10/134 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+LSP+ RP ++ +K + F+I+Q+ + R LD+++GTGS
Sbjct: 1 MRIISGSARGRKILSPQSSVTRPTLDRIKESIFNIIQN------QVYGSRVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG + V+ P +L N++ F D+ + + L E+F K
Sbjct: 55 LGLEAASRGAKFSYLVDKSPETYP-LLRENIKNLKFEDLCKSFNMDAYSAL---EEFASK 110
Query: 229 DGPFDYMSVTPPYT 242
FD + + PPY
Sbjct: 111 SIVFDLIFIDPPYA 124
>gi|417859038|ref|ZP_12504095.1| hypothetical protein Agau_C102063 [Agrobacterium tumefaciens F2]
gi|338825042|gb|EGP59009.1| hypothetical protein Agau_C102063 [Agrobacterium tumefaciens F2]
Length = 185
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK +RP ++ + + F+IL A P SL R LD+++GTG+
Sbjct: 1 MRIVGGEFRGRTLAAPKTNSIRPTIDRTRESLFNILSHA--YPESLDGTRVLDVFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA+SRGC FVE + V L W +D +H R A + G
Sbjct: 59 VGLEALSRGCRVALFVE------NGVEGRGLLWEN-IDALGLHG-RARILRRDATKLGGV 110
Query: 229 DG--PFDYMSVTPPY 241
+ PFD + PPY
Sbjct: 111 NNIEPFDLLFADPPY 125
>gi|374855681|dbj|BAL58536.1| N6-adenine-specific methylase [uncultured candidate division OP1
bacterium]
Length = 189
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 13/136 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMD---VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSG 165
++++GG+ R + L+ P +RPM E V+ A FDIL S+ R+LDL++G
Sbjct: 1 MRIIGGRLRGRLLIEPTPQIKKFLRPMREAVRAALFDILGD------SVTDARFLDLFAG 54
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
TGS+GIEA+SRG FV+ ++ NL+ G +S++ + L+ E F
Sbjct: 55 TGSIGIEALSRGARSCVFVDSSER-ACQIIRENLKNLGLERCASVYRLDA---LKAIELF 110
Query: 226 VGKDGPFDYMSVTPPY 241
+ FD + + PPY
Sbjct: 111 ARQGEKFDLVFLGPPY 126
>gi|435853930|ref|YP_007315249.1| RNA methyltransferase, RsmD family [Halobacteroides halobius DSM
5150]
gi|433670341|gb|AGB41156.1| RNA methyltransferase, RsmD family [Halobacteroides halobius DSM
5150]
Length = 184
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 33/190 (17%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + K+L S DVRP + K A F+IL + R LDLY+G G
Sbjct: 1 MRIIAGKNKGKRLKSLDRRDVRPTSDRTKEALFNIL------GPDVVGTRCLDLYAGFGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEAISRG +EV F+E + ++ + N+ + D S + V L R
Sbjct: 55 LGIEAISRGANEVTFIEQNKQ-IAKTIDQNIASVSYQDQSKVIVDDVLKALRRLR----- 108
Query: 229 DGPFDYMSVTPPYTAVDYE-------------------VVEYPLRTDMLDTCGCLVKIKD 269
G F+ + + PPY ++ +VE+ + D LD V IK+
Sbjct: 109 -GHFELIFMDPPYKEIELYTKTLDRISQYNLLHPTGIIIVEHQAKAD-LDWPADYVVIKE 166
Query: 270 RRFGRTHLAI 279
R +G++ L +
Sbjct: 167 RNYGKSTLTL 176
>gi|302874761|ref|YP_003843394.1| methyltransferase [Clostridium cellulovorans 743B]
gi|307690624|ref|ZP_07633070.1| methyltransferase [Clostridium cellulovorans 743B]
gi|302577618|gb|ADL51630.1| methyltransferase [Clostridium cellulovorans 743B]
Length = 185
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 10/133 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ +K+LSP M+ RP ++ VK + F I+Q+ + D++SGTGS
Sbjct: 1 MRIISGLAKGRKILSPDSMETRPTLDRVKESIFSIIQN------KIYDATVTDIFSGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG + + V+ P L N+E F D+ + T+ ++ + E + K
Sbjct: 55 LGLEAASRGAKQCYLVDRSPSAYG-YLQKNVENLKFQDICT--TLNMDAY-ESLKHCHKK 110
Query: 229 DGPFDYMSVTPPY 241
FD + + PPY
Sbjct: 111 GVTFDIIFIDPPY 123
>gi|167765563|ref|ZP_02437627.1| hypothetical protein CLOSS21_00057 [Clostridium sp. SS2/1]
gi|167712748|gb|EDS23327.1| RNA methyltransferase, RsmD family [Clostridium sp. SS2/1]
gi|291559029|emb|CBL37829.1| RNA methyltransferase, RsmD family [butyrate-producing bacterium
SSC/2]
Length = 185
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 72/133 (54%), Gaps = 10/133 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ KL + +GM+ RP + +K F+++Q P S +LDL+SG+G
Sbjct: 1 MRVVAGSAKSLKLKTIEGMETRPTQDRIKETLFNMIQY--DIPGST----FLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E +FVE + + NL +T + + V + + + E K
Sbjct: 55 IGIEALSRGAKEAYFVEKAKPAL-RCIRENLRYTKLDKKAQVLATDVNSAIRQLET---K 110
Query: 229 DGPFDYMSVTPPY 241
+ FD++ + PPY
Sbjct: 111 NVTFDHIFMDPPY 123
>gi|419840643|ref|ZP_14364031.1| RNA methyltransferase, RsmD family [Fusobacterium necrophorum
subsp. funduliforme ATCC 51357]
gi|386907586|gb|EIJ72293.1| RNA methyltransferase, RsmD family [Fusobacterium necrophorum
subsp. funduliforme ATCC 51357]
Length = 182
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+AR +KL + KG + RP + VK A F I+ L +LDL+SG+G+
Sbjct: 1 MRIIAGEARSRKLKTRKGFETRPTLANVKEALFSII------APHLEESIFLDLFSGSGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG +E D + +I N+ G+ D + + F RA + + +
Sbjct: 55 IALEALSRGAKRAVMIEKDAEALR-FIIENVNTLGYQD--RCRAYKNDVF--RAIEILAR 109
Query: 229 DGP-FDYMSVTPPY-----TAVDYE-------------VVEYPLRTDMLDTCGCLVKIKD 269
G F+ + + PPY T V + + E+ DM D G K+ +
Sbjct: 110 KGEKFNIIFMDPPYQDNVCTKVLEQIDNCGILEEEGIIICEHHAFEDMADQVGKFQKVDE 169
Query: 270 RRFGRTHLAIY 280
RR+ + + Y
Sbjct: 170 RRYQKKVITFY 180
>gi|387818717|ref|YP_005679064.1| ribosomal RNA small subunit methyltransferase D [Clostridium
botulinum H04402 065]
gi|322806761|emb|CBZ04330.1| ribosomal RNA small subunit methyltransferase D [Clostridium
botulinum H04402 065]
Length = 185
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 10/134 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+LSP+ RP ++ +K + F+I+Q+ + R LD+++GTGS
Sbjct: 1 MRIISGSARGRKILSPQSSVTRPTLDRIKESIFNIIQN------QVYGSRVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG + V+ P +L N++ F D+ + + L E+F K
Sbjct: 55 LGLEAASRGAKFSYLVDKSPETYP-LLRENIKNLKFEDLCKSFNMDAYSAL---EEFASK 110
Query: 229 DGPFDYMSVTPPYT 242
FD + + PPY
Sbjct: 111 SIVFDLIFIDPPYA 124
>gi|150395642|ref|YP_001326109.1| putative methyltransferase [Sinorhizobium medicae WSM419]
gi|150027157|gb|ABR59274.1| putative methyltransferase [Sinorhizobium medicae WSM419]
Length = 186
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK D+RP + + + F+IL A P L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRTLATPKSNDIRPTTDRTRESLFNILGHA--YPEVLDGTRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG EA+SRGC +V FVE +L N+E G R + F A V
Sbjct: 59 VGFEALSRGCRQVLFVEQGVE-GRGLLRVNIEALGLQG-------RAKIFRRDATDLGPV 110
Query: 227 GKDGPFDYMSVTPPY 241
G PF + PPY
Sbjct: 111 GTMEPFHLVFADPPY 125
>gi|325972733|ref|YP_004248924.1| methyltransferase [Sphaerochaeta globus str. Buddy]
gi|324027971|gb|ADY14730.1| methyltransferase [Sphaerochaeta globus str. Buddy]
Length = 186
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 27/187 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG R + + P G+ +RP M++++ + F IL +L WLDL++G+G
Sbjct: 1 MRITGGIYRGRTVACPPGI-IRPAMDMMRESLFSIL-------GNLEGKSWLDLFTGSGC 52
Query: 169 VGIEAISRGCSEVHFVEMDPW----VVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
VGIEA SRG S VH VE D ++ N+ + E T F+ + +H R +R
Sbjct: 53 VGIEAASRGASLVHLVEKDRLKRTTILENISMVESEITLFM--ADVH--RFIPTAKRQYD 108
Query: 225 FVGKDGPFDYMSVTPPYTAVDYE---------VVEYPL--RTDMLDTCGCLVKIKDRRFG 273
V D PF AVD + ++ YP + + G LV R++G
Sbjct: 109 IVYADPPFPMQGKVGLAQAVDKQKLLTPTGLFIIHYPSEEKGQWPEQVGNLVCYDQRKYG 168
Query: 274 RTHLAIY 280
R+ L Y
Sbjct: 169 RSTLRFY 175
>gi|339627491|ref|YP_004719134.1| methyltransferase [Sulfobacillus acidophilus TPY]
gi|379008136|ref|YP_005257587.1| methyltransferase [Sulfobacillus acidophilus DSM 10332]
gi|339285280|gb|AEJ39391.1| putative methyltransferase [Sulfobacillus acidophilus TPY]
gi|361054398|gb|AEW05915.1| methyltransferase [Sulfobacillus acidophilus DSM 10332]
Length = 183
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 38/200 (19%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+A +L++P+GM RP E V+ A F+I Q + R+LDLY G+G+
Sbjct: 1 MRIVGGQASGHRLVAPRGMSTRPTGERVREALFNIWQR------RIESARFLDLYGGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EA+SRG E VE D + N+ GF RV AEQ V
Sbjct: 55 MALEAVSRGAREAVVVEPDK-KARAAIRHNIRHLGF-------DPRVRLVAMTAEQAVNL 106
Query: 228 ---KDGPFDYMSVTPPYT----------------AVDYEVVEYPLRTDMLDTCGCLVKIK 268
+D FD + PP+ + V+E+ + D + G L++ +
Sbjct: 107 WADEDQRFDVVFCDPPWAQGVSGIVRSRLAALIGSTGEVVIEHAAKADPGEVPG-LLRGE 165
Query: 269 DRRFGRTHLAIYGPDWAQKK 288
RR+G T + Y WA+++
Sbjct: 166 TRRYGDTAVTRY---WAERQ 182
>gi|317498519|ref|ZP_07956813.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
5_1_63FAA]
gi|316894212|gb|EFV16400.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
5_1_63FAA]
Length = 185
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 72/133 (54%), Gaps = 10/133 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ KL + +GM+ RP + +K F+++Q P S +LDL+SG+G
Sbjct: 1 MRVVAGSAKSLKLKTIEGMETRPTQDRIKETLFNMIQY--DIPGS----TFLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E +FVE + + NL +T + + V + + + E K
Sbjct: 55 IGIEALSRGAKEAYFVEKAKPAL-RCIRENLRYTKLDKKAQVLATDVNSAIRQLET---K 110
Query: 229 DGPFDYMSVTPPY 241
+ FD++ + PPY
Sbjct: 111 NVTFDHIFMDPPY 123
>gi|168182571|ref|ZP_02617235.1| RNA methyltransferase, RsmD family [Clostridium botulinum Bf]
gi|237795933|ref|YP_002863485.1| RsmD family RNA methyltransferase [Clostridium botulinum Ba4 str.
657]
gi|182674241|gb|EDT86202.1| RNA methyltransferase, RsmD family [Clostridium botulinum Bf]
gi|229261371|gb|ACQ52404.1| RNA methyltransferase, RsmD family [Clostridium botulinum Ba4 str.
657]
Length = 185
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 10/134 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+LSP+ RP ++ +K + F+I+Q+ + R LD+++GTGS
Sbjct: 1 MRIISGSARGRKILSPQSSVTRPTLDRIKESIFNIIQN------QVYGSRVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG + V+ P +L N++ F D+ + + L E+F K
Sbjct: 55 LGLEAASRGAKFSYLVDKSPETYP-LLRENIKNLKFEDLCKSFNMDAYSAL---EEFASK 110
Query: 229 DGPFDYMSVTPPYT 242
FD + + PPY
Sbjct: 111 SIVFDLIFIDPPYA 124
>gi|154504976|ref|ZP_02041714.1| hypothetical protein RUMGNA_02486 [Ruminococcus gnavus ATCC 29149]
gi|336432512|ref|ZP_08612347.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
2_1_58FAA]
gi|153794859|gb|EDN77279.1| RNA methyltransferase, RsmD family [Ruminococcus gnavus ATCC 29149]
gi|336018849|gb|EGN48586.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
2_1_58FAA]
Length = 189
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 73/133 (54%), Gaps = 11/133 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+R +L + GM+ RP + +K F+++ S+ +LDL++G+G
Sbjct: 1 MRVIAGTAKRLQLKTLDGMETRPTTDRIKETLFNMI------APSVFGSVFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E FVE +P ++ V NL +T + + T V T L + E
Sbjct: 55 IGIEALSRGAKEAVFVEKNPKAMACVK-ENLNYTKLSEKAMTMTKDVLTALYQLEG---- 109
Query: 229 DGPFDYMSVTPPY 241
+ FD++ + PPY
Sbjct: 110 EKVFDFVFMDPPY 122
>gi|342732299|ref|YP_004771138.1| methyltransferase [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|384455702|ref|YP_005668297.1| methyltransferase [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|417959284|ref|ZP_12602123.1| hypothetical protein SFB1_072G1 [Candidatus Arthromitus sp. SFB-1]
gi|417961160|ref|ZP_12603630.1| hypothetical protein SFB2_072G3 [Candidatus Arthromitus sp. SFB-2]
gi|417965785|ref|ZP_12607266.1| hypothetical protein SFB4_286G14 [Candidatus Arthromitus sp. SFB-4]
gi|417966664|ref|ZP_12607974.1| hypothetical protein SFB5_101G3 [Candidatus Arthromitus sp. SFB-5]
gi|417967951|ref|ZP_12609007.1| hypothetical protein SFB6_015G20 [Candidatus Arthromitus sp.
SFB-co]
gi|418016299|ref|ZP_12655864.1| rRNA (guanine-N(2)-)-methyltransferase [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418372554|ref|ZP_12964646.1| hypothetical protein SFBSU_006G349 [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|342329754|dbj|BAK56396.1| methyltransferase [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|345506634|gb|EGX28928.1| rRNA (guanine-N(2)-)-methyltransferase [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346984045|dbj|BAK79721.1| methyltransferase [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|380333731|gb|EIA24259.1| hypothetical protein SFB1_072G1 [Candidatus Arthromitus sp. SFB-1]
gi|380334200|gb|EIA24651.1| hypothetical protein SFB2_072G3 [Candidatus Arthromitus sp. SFB-2]
gi|380335824|gb|EIA25930.1| hypothetical protein SFB4_286G14 [Candidatus Arthromitus sp. SFB-4]
gi|380340366|gb|EIA28971.1| hypothetical protein SFB5_101G3 [Candidatus Arthromitus sp. SFB-5]
gi|380340533|gb|EIA29114.1| hypothetical protein SFB6_015G20 [Candidatus Arthromitus sp.
SFB-co]
gi|380342223|gb|EIA30668.1| hypothetical protein SFBSU_006G349 [Candidatus Arthromitus sp.
SFB-mouse-SU]
Length = 189
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 84/160 (52%), Gaps = 14/160 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++++ GKA+ +K++SP G DV RP ++ VK + F+I+Q+ R LDL++GTG
Sbjct: 1 MRIITGKAKGRKIISPDGYDVTRPTLDRVKQSIFNIIQND-----LTRDSIVLDLFAGTG 55
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
S+G+E+ SRG + + + + S L N+ G D + + L R F G
Sbjct: 56 SLGLESASRGAKKTYLCDRNDITFS-YLKQNIRNLGLSDCAFAIKGEFDVNLRR---FEG 111
Query: 228 KDGPFDYMSVTPPYTAVDY--EVVEYPLRTDMLDTCGCLV 265
K+ F+ M + PPY + DY + ++LD G +V
Sbjct: 112 KE-KFNLMFIDPPYNS-DYVSRSINLIDELNLLDKYGLIV 149
>gi|167750940|ref|ZP_02423067.1| hypothetical protein EUBSIR_01925 [Eubacterium siraeum DSM 15702]
gi|167656119|gb|EDS00249.1| RNA methyltransferase, RsmD family [Eubacterium siraeum DSM 15702]
Length = 184
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 83/188 (44%), Gaps = 29/188 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +KL++P+G+DVRP + VK A F +Q LDL+SG+G
Sbjct: 1 MRVITGTARGRKLIAPEGLDVRPTKDSVKEAIFSAIQ------FETEGSVVLDLFSGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + + V+ + + N+ GF I + FL +
Sbjct: 55 LGIEAVSRGAKKAYLVDSSQNSI-KFIKQNVAHVGFESQCEIINMPNSAFLRTTGE---- 109
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDT----C----GC--------LVKIKDRRF 272
FD + PPY + L M DT C GC V K +++
Sbjct: 110 --KFDIALLDPPYEKSLIQRSLPALTEKMKDTGVIICEHEPGCRLPEEINGFVITKSKKY 167
Query: 273 GRTHLAIY 280
G+T L Y
Sbjct: 168 GKTALTFY 175
>gi|399041866|ref|ZP_10736795.1| RNA methyltransferase, RsmD family [Rhizobium sp. CF122]
gi|398059729|gb|EJL51573.1| RNA methyltransferase, RsmD family [Rhizobium sp. CF122]
Length = 186
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK +D+RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSIDIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRGLLWEN-IDALGLHG-RTRILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPY 241
G PF + PPY
Sbjct: 111 GNLEPFQMLFADPPY 125
>gi|291557425|emb|CBL34542.1| RNA methyltransferase, RsmD family [Eubacterium siraeum V10Sc8a]
Length = 184
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 83/188 (44%), Gaps = 29/188 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +KL++P+G+DVRP + VK A F +Q LDL+SG+G
Sbjct: 1 MRVITGTARGRKLIAPEGLDVRPTKDSVKEAIFSAIQ------FETEGSVVLDLFSGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + + V+ + + N+ GF I + FL +
Sbjct: 55 LGIEAVSRGAKKAYLVDSSQNSI-KFIKQNVAHVGFESQCEIVNMPNSAFLRTTGE---- 109
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDT----C----GC--------LVKIKDRRF 272
FD + PPY + L M DT C GC V K +++
Sbjct: 110 --KFDIALLDPPYEKSLIQRSLPALTEKMKDTGVIICEHEPGCRLPEEINGFVITKSKKY 167
Query: 273 GRTHLAIY 280
G+T L Y
Sbjct: 168 GKTALTFY 175
>gi|340752558|ref|ZP_08689357.1| RsmD family RNA methyltransferase [Fusobacterium sp. 2_1_31]
gi|229422356|gb|EEO37403.1| RsmD family RNA methyltransferase [Fusobacterium sp. 2_1_31]
Length = 182
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------APYVENSVFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EA+SRG +E D + +I N++ GF D + V RA + +G
Sbjct: 55 ISLEAVSRGAKRAVMIEKDGEALK-YIIENIDNLGFTDRCRAYKNDV----VRAVEILGR 109
Query: 228 KDGPFDYMSVTPPYT---------AVDYE---------VVEYPLRTDMLDTCGCLVKIKD 269
K FD + + PPY A+D + E+ L D+ D K +
Sbjct: 110 KKEKFDIIFMDPPYQDNITTKVLKAIDKADILADDGLIICEHHLFEDLEDNIASFRKTDE 169
Query: 270 RRFGRTHLAIY 280
R++ + L +
Sbjct: 170 RKYNKKILTFF 180
>gi|429761489|ref|ZP_19293914.1| RNA methyltransferase, RsmD family [Anaerostipes hadrus DSM 3319]
gi|429183742|gb|EKY24783.1| RNA methyltransferase, RsmD family [Anaerostipes hadrus DSM 3319]
Length = 185
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 72/133 (54%), Gaps = 10/133 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ KL + +GM+ RP + +K F+++Q P S +LDL+SG+G
Sbjct: 1 MRVVAGSAKSLKLKTIEGMETRPTQDRIKETLFNMIQY--DIPGS----TFLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E +FVE + + NL +T + + V + + + E K
Sbjct: 55 IGIEALSRGAKEAYFVEKAKPAL-RCIRENLRYTKLDKKAQVLATDVNSAIRQLET---K 110
Query: 229 DGPFDYMSVTPPY 241
+ FD++ + PPY
Sbjct: 111 NVTFDHIFMDPPY 123
>gi|167648597|ref|YP_001686260.1| methyltransferase [Caulobacter sp. K31]
gi|167351027|gb|ABZ73762.1| methyltransferase [Caulobacter sp. K31]
Length = 187
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R K +++P G RP + + A F+IL+ A P LR R +DL++G+G+
Sbjct: 1 MRIVSGQYRGKAIVTPPGDTTRPTSDRARQAVFNILEHAAWAP-ELRGARVIDLFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + FVE D + NLE G S +H R
Sbjct: 60 LGLEAMSRGAAFCLFVETDD-AARGAIRENLEAFGLFGQSRVHRRDATDLGPRPAS---A 115
Query: 229 DGPFDYMSVTPPYT 242
PF + PPY
Sbjct: 116 GAPFTLAFLDPPYA 129
>gi|357632891|ref|ZP_09130769.1| methyltransferase [Desulfovibrio sp. FW1012B]
gi|357581445|gb|EHJ46778.1| methyltransferase [Desulfovibrio sp. FW1012B]
Length = 202
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 96/212 (45%), Gaps = 36/212 (16%)
Query: 109 LQVLGGK--ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSG 165
++++GG+ RR K++ +G+ RP V+ A F +L + G +L PG R LDL++G
Sbjct: 3 MRIIGGRFGGRRIKVIESQGL--RPATGRVREALFSMLAARG----ALAPGARVLDLFAG 56
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQ 224
GSVGIEA+SRG S+ FVE P V+ VL NL G D + + V L R
Sbjct: 57 AGSVGIEALSRGASQALFVEKHP-AVARVLRENLRGLGLAPDEAKVVEADVARALPR--- 112
Query: 225 FVGKDGPFDYMSVTPPY------------------TAVDYEVVEYPLRTDMLDTC--GCL 264
G+ FD +++ PPY V E D+ DT L
Sbjct: 113 LAGQT--FDLVAIDPPYGLGLLPPTLAGLVANGLLAPGGVIVAEIEAGADLPDTAVPDTL 170
Query: 265 VKIKDRRFGRTHLAIYGPDWAQKKRKSEKKIP 296
+ DR +G+T + ++ P E P
Sbjct: 171 ECLTDRLYGQTRIILWTPILPASPSTPEPSTP 202
>gi|163814172|ref|ZP_02205564.1| hypothetical protein COPEUT_00326 [Coprococcus eutactus ATCC 27759]
gi|158450621|gb|EDP27616.1| RNA methyltransferase, RsmD family [Coprococcus eutactus ATCC
27759]
Length = 189
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 70/138 (50%), Gaps = 18/138 (13%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQ-SAGGCPASLRPGRWLDLYSGT 166
+++V+ G+AR KL++ MD RP + +K F++L GC +LDL+SG+
Sbjct: 1 MMRVIAGRARSLKLVTVDSMDTRPTTDRIKETLFNVLSPDIPGCS-------FLDLFSGS 53
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD---VSSIHTVRVETFLERAE 223
G++GIEA+SRG FVE + + NL++T D V S V LER +
Sbjct: 54 GAIGIEALSRGAKRAVFVENGRKALE-CINKNLDFTKLRDGAQVLSTDAVSAVNTLERQK 112
Query: 224 QFVGKDGPFDYMSVTPPY 241
FD + + PPY
Sbjct: 113 DV------FDIIFMDPPY 124
>gi|306819896|ref|ZP_07453549.1| possible rRNA (guanine-N(2)-)-methyltransferase [Eubacterium yurii
subsp. margaretiae ATCC 43715]
gi|304552053|gb|EFM39991.1| possible rRNA (guanine-N(2)-)-methyltransferase [Eubacterium yurii
subsp. margaretiae ATCC 43715]
Length = 196
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 18/137 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GGK R KKL+ PK D+RP M+ + + F++LQ + +LDL+SG+G+
Sbjct: 16 MRVIGGKYRGKKLIPPKNDDIRPTMDKARESLFNMLQ------YYIYESSFLDLFSGSGA 69
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS---IHTVRVETFLERAEQF 225
V IEAISRG V VE ++ I N LD S + V +FL+ +
Sbjct: 70 VSIEAISRGAKLVTLVEKSR---ESIKIINANLNLILDEKSKAELINSDVISFLQTTNE- 125
Query: 226 VGKDGPFDYMSVTPPYT 242
FD + PPY
Sbjct: 126 -----RFDIIFADPPYA 137
>gi|160879469|ref|YP_001558437.1| methyltransferase [Clostridium phytofermentans ISDg]
gi|160428135|gb|ABX41698.1| methyltransferase [Clostridium phytofermentans ISDg]
Length = 185
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 23/158 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKARR L +P+G+D RP + K F+ILQ +L +LDL+SG+G+
Sbjct: 1 MRVIAGKARRTLLKTPEGLDTRPTTDRTKETLFNILQ------GNLADSCFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVV----SNVLIPNLEWTG-FLDVSSIHTVRVETFLERAE 223
+GIEA+SRG S F + V +N+ ++E +I T+ +A
Sbjct: 55 IGIEALSRGASFAVFSDTSKTAVDCIKANIKTTHMEGQAEVFQKDAISTI-------KAM 107
Query: 224 QFVGKDGPFDYMSVTPPYTAVDYE--VVEYPLRTDMLD 259
+ GK F + + PPY D+E ++E ++++D
Sbjct: 108 EVAGK--VFQIIFMDPPYNC-DHEKIILEMLDHSNIID 142
>gi|408378532|ref|ZP_11176129.1| hypothetical protein QWE_13078 [Agrobacterium albertimagni AOL15]
gi|407747669|gb|EKF59188.1| hypothetical protein QWE_13078 [Agrobacterium albertimagni AOL15]
Length = 186
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK D+RP ++ + + F+IL A P L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRSLATPKSNDIRPTVDRTRESLFNILAHA--HPGVLDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIEA+SRGC FVE ++V L W +D +H R A
Sbjct: 59 VGIEALSRGCKSALFVE------NSVEGRGLLWEN-IDAFGLHG-RARMLRRDATDLGPA 110
Query: 229 DG--PFDYMSVTPPY 241
+ PF+ + PPY
Sbjct: 111 NNIEPFELVFADPPY 125
>gi|189485569|ref|YP_001956510.1| putative N6-adenine-specific methylase [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287528|dbj|BAG14049.1| putative N6-adenine-specific methylase [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 200
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 22/166 (13%)
Query: 109 LQVLGGKARRK--KLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
L+V+ G AR + K L + +RPM+ +K + FDI+Q P S+ ++DL++G
Sbjct: 3 LKVIAGSARGRIIKTLPHDNLSIRPMLGRIKKSIFDIIQFK--IPYSI----FIDLFAGA 56
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
GSVGIEA+SRG +V F E+ +S ++ N+ GF D + I + + F
Sbjct: 57 GSVGIEALSRGAKKVVFAELSDISLS-LIKRNVNMLGFNDKAKIVKCDI------IKDFA 109
Query: 227 GKDGPFDYMSVTPPY-------TAVDYEVVEYPLRTDMLDTCGCLV 265
+D + + PPY A+ Y V+ +R D+L L+
Sbjct: 110 VLQDKYDIIFMGPPYKDENKKALALTYPVLRNVMRYDILKDDSILI 155
>gi|153004926|ref|YP_001379251.1| putative methyltransferase [Anaeromyxobacter sp. Fw109-5]
gi|152028499|gb|ABS26267.1| putative methyltransferase [Anaeromyxobacter sp. Fw109-5]
Length = 179
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 81/188 (43%), Gaps = 27/188 (14%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G AR ++L +P+G RP + V+GA F++L G LDLY+GTG
Sbjct: 1 MTRIIAGSARGRRLAAPRGEATRPTSDKVRGAVFNVLGQ------FFEGGDVLDLYAGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++ +EA+SRGC+ VE D + ++ N GF + RVE + R
Sbjct: 55 ALALEALSRGCARAVCVEADRG-AAELIGRNAAACGFEGRVDVRRGRVEEVVPRLAAGA- 112
Query: 228 KDGPFDYMSVTPPYTA---------------VDYEVVEYPLRTDMLDTCGCLVKIKDRRF 272
F V PPY V E+ R + G L RR+
Sbjct: 113 ----FALAFVDPPYAEGPEAALALAARCLAPGARAVAEHDARRPPPERIGGLALADRRRY 168
Query: 273 GRTHLAIY 280
G T ++IY
Sbjct: 169 GGTGISIY 176
>gi|262068284|ref|ZP_06027896.1| RNA methyltransferase, RsmD family [Fusobacterium periodonticum
ATCC 33693]
gi|291378022|gb|EFE85540.1| RNA methyltransferase, RsmD family [Fusobacterium periodonticum
ATCC 33693]
Length = 182
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------APYVENSVFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EA+SRG +E D + +I N++ GF D + V RA + +G
Sbjct: 55 ISLEAVSRGAKRAVMIEKDGEALK-YIIENIDNLGFTDRCRAYKNDV----VRAVEILGR 109
Query: 228 KDGPFDYMSVTPPYT---------AVDYE---------VVEYPLRTDMLDTCGCLVKIKD 269
K FD + + PPY A+D + E+ L D+ D K +
Sbjct: 110 KKEKFDIIFMDPPYQDNITTKVLKAIDKADILADDGLIICEHHLFEDLDDNIASFRKTDE 169
Query: 270 RRFGRTHLAIY 280
R++ + L +
Sbjct: 170 RKYNKKILTFF 180
>gi|335039528|ref|ZP_08532688.1| methyltransferase [Caldalkalibacillus thermarum TA2.A1]
gi|334180596|gb|EGL83201.1| methyltransferase [Caldalkalibacillus thermarum TA2.A1]
Length = 190
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 29/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + ++L + G RP + VK A F+++ + R G LDL++GTGS
Sbjct: 1 MRVISGTFKGRRLTAVPGHHTRPTADRVKEAIFNLIPDD-----TYRDGTGLDLFAGTGS 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRGC + F++ P V V+ NL+ G + S ++ RA + + K
Sbjct: 56 LGIEALSRGCRRMIFIDHHPMAVK-VIYQNLKALGLSENSEVY----RNDARRALKVLAK 110
Query: 229 DG-PFDYMSVTPPYTAVDYEVV-----EYPLR-------------TDMLDTCGCLVKIKD 269
G F+ + + PPY + V+ EY L T + + L+ K
Sbjct: 111 RGLQFEIIFLDPPYARHNLPVILSLIEEYNLLRPEGVIVVETAKGTALNNKLNQLILDKH 170
Query: 270 RRFGRTHLAIY 280
+G T + IY
Sbjct: 171 HHYGDTEIRIY 181
>gi|218962130|ref|YP_001741905.1| hypothetical protein CLOAM1872 [Candidatus Cloacamonas
acidaminovorans]
gi|167730787|emb|CAO81699.1| conserved hypothetical protein [Candidatus Cloacamonas
acidaminovorans str. Evry]
Length = 215
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 14/133 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G +++ L GM RP + F +LQ GC R LDL++G+GS
Sbjct: 26 MRIITGIYKKRNLFLVPGMSTRPTSSFNREVIFSVLQDYAGC-------RVLDLFAGSGS 78
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+E +SRG V FVE P + N ++ N+ G + + +V+ +L+ E
Sbjct: 79 LGLETLSRGAVWVDFVEFAPSAI-NTILQNINLLGCSENCHLWRKKVDVYLKSCE----- 132
Query: 229 DGPFDYMSVTPPY 241
+D + + PPY
Sbjct: 133 -NKYDIIFIDPPY 144
>gi|289551063|ref|YP_003471967.1| ribosomal RNA small subunit methyltransferase D [Staphylococcus
lugdunensis HKU09-01]
gi|385784684|ref|YP_005760857.1| putative methylase [Staphylococcus lugdunensis N920143]
gi|418414359|ref|ZP_12987574.1| RsmD family RNA methyltransferase [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|418637514|ref|ZP_13199833.1| RNA methyltransferase, RsmD family [Staphylococcus lugdunensis
VCU139]
gi|289180595|gb|ADC87840.1| Ribosomal RNA small subunit methyltransferase D [Staphylococcus
lugdunensis HKU09-01]
gi|339894940|emb|CCB54244.1| putative methylase [Staphylococcus lugdunensis N920143]
gi|374838760|gb|EHS02295.1| RNA methyltransferase, RsmD family [Staphylococcus lugdunensis
VCU139]
gi|410876966|gb|EKS24863.1| RsmD family RNA methyltransferase [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 183
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L + G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLHNVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG +V FV+ + + V+ NL+ + + ++ + L+ + +
Sbjct: 53 LGIEGLSRGMDKVIFVDQNFKAIK-VIQANLQQLDLTEQAEVYKNNADRALKALNK---R 108
Query: 229 DGPFDYMSVTPPYT 242
D FDY+ + PPY
Sbjct: 109 DIQFDYIFLDPPYN 122
>gi|386853613|ref|YP_006202898.1| hypothetical protein KK9_0208 [Borrelia garinii BgVir]
gi|365193647|gb|AEW68545.1| Hypothetical protein KK9_0208 [Borrelia garinii BgVir]
Length = 178
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 17/135 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ V GK + +K+L PK VRP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 1 MYVSSGKYKGRKILFPKTGAVRPVMSLVREAFFSIIFK------DIINSKFLDVFAGTGI 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EA+SRG S H VE + L+ N + V + + F +RAE F+G
Sbjct: 55 MSVEALSRGASLAHLVECNKK-AKITLVKNFSF-----VEEFY----KFFFQRAEDFLGK 104
Query: 228 KDGPFDYMSVTPPYT 242
KD +D++ + PP+
Sbjct: 105 KDLFYDFIYLDPPFN 119
>gi|427414336|ref|ZP_18904526.1| RsmD family RNA methyltransferase [Veillonella ratti
ACS-216-V-Col6b]
gi|425714712|gb|EKU77715.1| RsmD family RNA methyltransferase [Veillonella ratti
ACS-216-V-Col6b]
Length = 184
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 13/133 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ L +PKGM RP + V+ + F++L + G ++ LDL+SGTG+
Sbjct: 1 MRIIAGRAKGHTLKAPKGMSTRPTQDRVRESIFNVLSNYGLIETTV-----LDLFSGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
G+EA+SRG S V+ + ++ N E D + +ET A+Q G+
Sbjct: 56 FGLEAVSRGASLAVCVDKR---TARIIKANTEHCHMEDAVEVIPTSIET---AAKQLAGR 109
Query: 229 DGPFDYMSVTPPY 241
FDY+ PPY
Sbjct: 110 Q--FDYIFADPPY 120
>gi|15895014|ref|NP_348363.1| N-6 adenine-specific DNA methylase [Clostridium acetobutylicum ATCC
824]
gi|337736955|ref|YP_004636402.1| N-6 adenine-specific DNA methylase [Clostridium acetobutylicum DSM
1731]
gi|384458462|ref|YP_005670882.1| N6-adenine-specific methylase [Clostridium acetobutylicum EA 2018]
gi|15024705|gb|AAK79703.1|AE007683_2 N6-adenine-specific methylase [Clostridium acetobutylicum ATCC 824]
gi|325509151|gb|ADZ20787.1| N6-adenine-specific methylase [Clostridium acetobutylicum EA 2018]
gi|336292932|gb|AEI34066.1| N6-adenine-specific methylase [Clostridium acetobutylicum DSM 1731]
Length = 188
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 76/135 (56%), Gaps = 11/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++++ GKA+ +K+L PKGM+ RP ++ VK A F+I+Q+ P ++ LD++SGTG
Sbjct: 1 MRIISGKAKGRKILPPKGMETTRPTLDRVKEAMFNIIQN--DVPEAV----VLDMFSGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
S+G+EA SRG + ++ P + +L N+E F + T+ ++++ E
Sbjct: 55 SLGLEAASRGAKVCYLIDKSP-ITYPILKENVENLRFDE--ECKTLNMDSY-EAVRYLAS 110
Query: 228 KDGPFDYMSVTPPYT 242
K F + + PPY
Sbjct: 111 KGKEFTLIFIDPPYA 125
>gi|379012002|ref|YP_005269814.1| methyltransferase [Acetobacterium woodii DSM 1030]
gi|375302791|gb|AFA48925.1| methyltransferase [Acetobacterium woodii DSM 1030]
Length = 198
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 13/160 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGR-WLDLYSGTG 167
++++ G+ R KKL+S G +RP + VKGA F+ LQ+ +R R ++DL+SGTG
Sbjct: 1 MRIIAGEKRGKKLVSITGNKIRPTTDKVKGAIFNSLQN------EIRDARIFVDLFSGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++G+EA+SRG + +F ++ + + N+ G+ + + + ++ L +
Sbjct: 55 AMGLEALSRGVEKAYFFDVSQESIE-ITKKNITLLGYQNQAKVFH---QSALHGVDMLEQ 110
Query: 228 KDGPFDYMSVTPPYTAVD--YEVVEYPLRTDMLDTCGCLV 265
D + V PY VD Y ++E ++L G LV
Sbjct: 111 NKIRCDIIFVDSPYHQVDEIYHLLEVVSEKEILSENGKLV 150
>gi|390956785|ref|YP_006420542.1| RsmD family RNA methyltransferase [Terriglobus roseus DSM 18391]
gi|390411703|gb|AFL87207.1| RNA methyltransferase, RsmD family [Terriglobus roseus DSM 18391]
Length = 195
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 54/86 (62%), Gaps = 6/86 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G R + L++P+GMD RP + ++ F++L S+ R+ DLY+G+G+
Sbjct: 1 MRVIAGTYRSRPLVAPRGMDTRPTSDRLRETLFNVLGP------SVVGARFADLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
VG+EAISRG +EV F E P ++ +
Sbjct: 55 VGVEAISRGAAEVFFAEKSPAALAAI 80
>gi|406591954|ref|YP_006739134.1| hypothetical protein B711_0159 [Chlamydia psittaci CP3]
gi|406594041|ref|YP_006741287.1| hypothetical protein B599_0153 [Chlamydia psittaci MN]
gi|410858122|ref|YP_006974062.1| conserved hypothetical protein [Chlamydia psittaci 01DC12]
gi|405782473|gb|AFS21221.1| hypothetical protein B599_0153 [Chlamydia psittaci MN]
gi|405787826|gb|AFS26569.1| hypothetical protein B711_0159 [Chlamydia psittaci CP3]
gi|410811017|emb|CCO01660.1| conserved hypothetical protein [Chlamydia psittaci 01DC12]
Length = 187
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 69/143 (48%), Gaps = 22/143 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + VRP VVK A F+I C A ++ +LDL++G GS
Sbjct: 1 MKILAGKYKGKSLKTFSNPSVRPTCGVVKEAVFNI------CSAYVKDAIFLDLFAGVGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVV------SNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
VG EA+SRG S V FV+ V S +L PNL T I + ++R
Sbjct: 55 VGFEALSRGASSVTFVDSSAQSVRLIRANSQLLNPNLPIT-------IIKQEARSAIQRL 107
Query: 223 EQFVGKDGPFDYMSVTPPYTAVD 245
+ K FD + + PPY D
Sbjct: 108 AK---KHMSFDLIYIDPPYNLED 127
>gi|374986252|ref|YP_004961747.1| putative RNA methylase [Streptomyces bingchenggensis BCW-1]
gi|297156904|gb|ADI06616.1| putative RNA methylase [Streptomyces bingchenggensis BCW-1]
Length = 195
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 70/150 (46%), Gaps = 16/150 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F +S G SLR R LDLY G+G
Sbjct: 1 MTRVIAGSAGGRRLAVPPGNGTRPTSDRAREGLFSTWESLLG---SLRGARVLDLYGGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG V VE D + +V ++ E RAEQ +
Sbjct: 58 AVGLEALSRGAEHVLLVESDARAARTIRA---------NVRALGLPGAELRTGRAEQAIA 108
Query: 228 ----KDGPFDYMSVTPPYTAVDYEVVEYPL 253
+ GP+D + + PPY D E+ E L
Sbjct: 109 GPAPESGPYDVVFLDPPYAVADEELREILL 138
>gi|373111993|ref|ZP_09526228.1| RsmD family RNA methyltransferase [Fusobacterium necrophorum subsp.
funduliforme 1_1_36S]
gi|371656561|gb|EHO21886.1| RsmD family RNA methyltransferase [Fusobacterium necrophorum subsp.
funduliforme 1_1_36S]
Length = 175
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 30/185 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+AR +KL + KG + RP + VK A F I+ L +LDL+SG+G+
Sbjct: 1 MRIIAGEARSRKLKTRKGFETRPTLANVKEALFSII------APHLEESIFLDLFSGSGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG +E D + +I N+ G+ D + + F RA + + +
Sbjct: 55 IALEALSRGAKRAVMIEKDAEALR-FIIENVNTLGYQD--RCRAYKNDVF--RAIEILAR 109
Query: 229 DGP-FDYMSVTPPYT---------------AVDYE---VVEYPLRTDMLDTCGCLVKIKD 269
G F+ + + PPY ++ E + E+ DM D G K+ +
Sbjct: 110 KGEKFNIIFMDPPYQDNVCTKVLEQIDNCGILEEEGIIICEHHAFEDMADQVGSFQKVDE 169
Query: 270 RRFGR 274
RR+ +
Sbjct: 170 RRYQK 174
>gi|445064228|ref|ZP_21376315.1| N6-adenine-specific methylase [Brachyspira hampsonii 30599]
gi|444504404|gb|ELV05079.1| N6-adenine-specific methylase [Brachyspira hampsonii 30599]
Length = 187
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 98/193 (50%), Gaps = 29/193 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ ++ G + +K+++PK D RP VK A F+I+ + +LDL SG+G+
Sbjct: 1 MHIISGNKKGRKIITPK-RDFRPTQGKVKEAFFNIID--------IENKTFLDLCSGSGA 51
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EA+SR V F+E+D V N+ N + T F + +++ ++ + AE +V K
Sbjct: 52 MGFEALSRNAGFVTFIEIDREAVKNIF-SNAK-TIFNNDENVYKIKRVS----AEDYVKK 105
Query: 229 -DGPFDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWAQ 286
+ FD + + PPY + + ++V+ ++ ++L+ G L A +G D+ +
Sbjct: 106 TNDKFDVIYLDPPYHSKIYFDVINNIIKRNILNDNGVLA------------AEFGADYYK 153
Query: 287 KKRKSEKKIPIVT 299
K +E IV+
Sbjct: 154 KFLDNEDFKNIVS 166
>gi|340750024|ref|ZP_08686871.1| RsmD family RNA methyltransferase [Fusobacterium mortiferum ATCC
9817]
gi|340562526|gb|EEO34715.2| RsmD family RNA methyltransferase [Fusobacterium mortiferum ATCC
9817]
Length = 182
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ K++ S KG D RP + +K + F I+ A P S+ +LDL+SG+GS
Sbjct: 1 MRIIAGDAKNKRIKSRKGTDTRPTLGSMKESLFSII--APYVPDSV----FLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG +E D + + I N+ G+ D + V RA + +G+
Sbjct: 55 ISLEALSRGAKRAVMIEKDAEALKYI-IENVNNLGYEDRCRAYKNDV----LRAIEILGR 109
Query: 229 DG-PFDYMSVTPPY---------TAVDYE---------VVEYPLRTDMLDTCGCLVKIKD 269
G F+ + + PPY A++ + E+ + +M DT G K +
Sbjct: 110 KGEKFNIIFMDPPYKDEVCTRVMKAIEKHKILAEDGLIICEHHVFEEMADTVGEYKKADE 169
Query: 270 RRFGRTHLAIY 280
R++G+ + Y
Sbjct: 170 RKYGKKCITFY 180
>gi|187778911|ref|ZP_02995384.1| hypothetical protein CLOSPO_02506 [Clostridium sporogenes ATCC
15579]
gi|187772536|gb|EDU36338.1| RNA methyltransferase, RsmD family [Clostridium sporogenes ATCC
15579]
Length = 185
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 10/134 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+LSP+ RP ++ +K + F+I+Q+ + R LD+++GTGS
Sbjct: 1 MRIISGSARGRKILSPQSSVTRPTLDRIKESIFNIIQN------QVYGSRVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG + V+ P +L N++ F D+ + + L E+F K
Sbjct: 55 LGLEAASRGAKFSYLVDKSPETYP-LLRENIKNLKFEDLCKSFNMDAYSAL---EEFARK 110
Query: 229 DGPFDYMSVTPPYT 242
FD + + PPY
Sbjct: 111 SIVFDLIFIDPPYA 124
>gi|297202619|ref|ZP_06920016.1| RsmD family RNA methyltransferase [Streptomyces sviceus ATCC 29083]
gi|197713194|gb|EDY57228.1| RsmD family RNA methyltransferase [Streptomyces sviceus ATCC 29083]
Length = 195
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 81/175 (46%), Gaps = 17/175 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F QS G P L+ R LDLY+G+G
Sbjct: 1 MTRVIAGTAGGRRLAVPPGNGTRPTSDRAREGLFSTWQSLLGGP--LQGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG S VE D + +V +I E +AEQ +
Sbjct: 59 AVGLEALSRGASHTLLVEADARAARTIR---------ENVRNIGLPGAEVRAGKAEQIIR 109
Query: 228 KDG---PFDYMSVTPPYTAVDYEVVE--YPLRTDMLDTCGCLVKI-KDRRFGRTH 276
P+D + + PPY D+++ E LRT+ T LV + + R G H
Sbjct: 110 TGAPTEPYDLVFLDPPYRVTDHDLREILLTLRTEHWLTPDALVTVERSTRGGEFH 164
>gi|220929300|ref|YP_002506209.1| methyltransferase [Clostridium cellulolyticum H10]
gi|219999628|gb|ACL76229.1| methyltransferase [Clostridium cellulolyticum H10]
Length = 187
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 12/136 (8%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSG 165
+L+V+ G + KL + +GM+ RP + VK F+I+ A PG LDL++G
Sbjct: 3 NILRVISGSVKGLKLFTLEGMNTRPTTDRVKENLFNII-------APYIPGSNVLDLFAG 55
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
TGS+GIEA+SRG + F + + + +++ NL+ T + S + + L++ Q
Sbjct: 56 TGSLGIEALSRGANSAVFCDQNKQSI-DIIKKNLQHTKLTEKSEVFLGEAQLMLKKLSQL 114
Query: 226 VGKDGPFDYMSVTPPY 241
K FD + + PPY
Sbjct: 115 SKK---FDIIFLDPPY 127
>gi|153814837|ref|ZP_01967505.1| hypothetical protein RUMTOR_01052 [Ruminococcus torques ATCC 27756]
gi|317500353|ref|ZP_07958578.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
8_1_57FAA]
gi|331089638|ref|ZP_08338537.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438959|ref|ZP_08618579.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
1_1_57FAA]
gi|145847868|gb|EDK24786.1| RNA methyltransferase, RsmD family [Ruminococcus torques ATCC
27756]
gi|316898294|gb|EFV20340.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
8_1_57FAA]
gi|330405006|gb|EGG84544.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
3_1_46FAA]
gi|336017214|gb|EGN46980.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
1_1_57FAA]
Length = 189
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 12/144 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +L + GMD RP + +K F+++ S+ +LDL++G+G
Sbjct: 1 MRVIAGSARSLRLKTLDGMDTRPTTDRIKETLFNMI------GPSMFDCVFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E FVE +P + V NL++T + T V L + E
Sbjct: 55 IGIEALSRGAREAVFVENNPKAMMCVK-DNLKFTKLEGKAVTLTTDVMNALYKLEG---- 109
Query: 229 DGPFDYMSVTPPYT-AVDYEVVEY 251
+ FDY+ + PPY + V+EY
Sbjct: 110 EKVFDYIFLDPPYDRGFEKRVLEY 133
>gi|253700934|ref|YP_003022123.1| methyltransferase [Geobacter sp. M21]
gi|251775784|gb|ACT18365.1| methyltransferase [Geobacter sp. M21]
Length = 193
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 13/136 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+AR ++L +PK M VRP + VK A F IL S G + R LD+++GTG+
Sbjct: 1 MRVIAGEARGRQLFAPKTMRVRPTSDRVKEALFSILLSRLGDLGGM---RVLDIFAGTGN 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET---FLERAEQF 225
+GIEA+SRG F++ + + NLE T F + + T +L R E+
Sbjct: 58 LGIEALSRGADCAVFIDAHRE-SAEAIRKNLETTRFAEKGKVVTQDAAAALKWLARGEK- 115
Query: 226 VGKDGPFDYMSVTPPY 241
PF + + PPY
Sbjct: 116 -----PFHLVFLDPPY 126
>gi|116250667|ref|YP_766505.1| hypothetical protein RL0893 [Rhizobium leguminosarum bv. viciae
3841]
gi|115255315|emb|CAK06390.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 186
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK ++RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNEIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHG-RTRILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPY 241
G PFD + PPY
Sbjct: 111 GNLDPFDVLFADPPY 125
>gi|241203271|ref|YP_002974367.1| methyltransferase [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240857161|gb|ACS54828.1| methyltransferase [Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 186
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK ++RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNEIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHG-RTRILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPY 241
G PFD + PPY
Sbjct: 111 GNLDPFDVLFADPPY 125
>gi|409436241|ref|ZP_11263433.1| putative methylase protein [Rhizobium mesoamericanum STM3625]
gi|408752151|emb|CCM74583.1| putative methylase protein [Rhizobium mesoamericanum STM3625]
Length = 186
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK D+RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSSDIRPTADRTRESLFNILSHA--YPECIDSTRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRGLLWEN-IDALGLHG-RTRILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPY 241
G PF + PPY
Sbjct: 111 GNLEPFQMLFADPPY 125
>gi|424873903|ref|ZP_18297565.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393169604|gb|EJC69651.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 186
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK ++RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNEIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHG-RTRILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPY 241
G PFD + PPY
Sbjct: 111 GNLDPFDVLFADPPY 125
>gi|386392447|ref|ZP_10077228.1| RNA methyltransferase, RsmD family [Desulfovibrio sp. U5L]
gi|385733325|gb|EIG53523.1| RNA methyltransferase, RsmD family [Desulfovibrio sp. U5L]
Length = 202
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 78/137 (56%), Gaps = 16/137 (11%)
Query: 109 LQVLGGK--ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSG 165
++++GG+ RR K++ +G+ RP V+ A F +L + G +L PG R LDL++G
Sbjct: 3 MRIIGGRFGGRRIKVIESQGL--RPATGRVREALFSMLAARG----ALAPGARVLDLFAG 56
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQ 224
GSVGIEA+SRG S+ FVE P V+ VL NL G ++ VE + RA +
Sbjct: 57 AGSVGIEALSRGASQALFVEKHP-AVARVLRENLRGLGL---AAHEAWVVEADVARALPR 112
Query: 225 FVGKDGPFDYMSVTPPY 241
G+ FD +++ PPY
Sbjct: 113 LAGQA--FDLVAIDPPY 127
>gi|358466377|ref|ZP_09176207.1| hypothetical protein HMPREF9093_00677 [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357069127|gb|EHI79075.1| hypothetical protein HMPREF9093_00677 [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 182
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 13/159 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSIV------APYIENSLFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EA+SRG +E D + + I N++ GF D + V RA + +G
Sbjct: 55 ISLEAVSRGAKRAVMIEKDGEALKYI-IENIDSLGFTDRCRAYKNDV----IRAVEILGR 109
Query: 228 KDGPFDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLV 265
K FD + + PPY + +V++ + D+L G ++
Sbjct: 110 KKEKFDIIFMDPPYQDNITTKVLKAIAKADILADDGLII 148
>gi|283768845|ref|ZP_06341756.1| RNA methyltransferase, RsmD family [Bulleidia extructa W1219]
gi|283104631|gb|EFC06004.1| RNA methyltransferase, RsmD family [Bulleidia extructa W1219]
Length = 183
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 96/190 (50%), Gaps = 30/190 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R + + +P+G D RP ++ V+ + F IL + + +LDLY+G+G+
Sbjct: 1 MRIIAGKFRSRVIEAPRGTDTRPTLDQVRESVFSILMN------DIVDASFLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
G+EA+SRG FV+ D V+ N+E +D +++ V + L + VG+
Sbjct: 55 NGLEALSRGAKRAVFVDKDRQ-AQRVIQKNIESLDVMDQATLLRVSAKQAL---DILVGQ 110
Query: 229 DGPFDYMSVTPPYTAV-DYEVVEYPLRTDMLDTCGCLV-----------KIKDRR----- 271
FD + + PPY + +++ + ++L++ ++ KI+D++
Sbjct: 111 --SFDLVYLDPPYKKQENVWIIKQLVEKELLNSNSIIMIEADRADRYPEKIEDQKLWKKK 168
Query: 272 -FGRTHLAIY 280
+GR+ L Y
Sbjct: 169 EYGRSQLLFY 178
>gi|343521011|ref|ZP_08757979.1| RNA methyltransferase, RsmD family [Parvimonas sp. oral taxon 393
str. F0440]
gi|343396217|gb|EGV08754.1| RNA methyltransferase, RsmD family [Parvimonas sp. oral taxon 393
str. F0440]
Length = 180
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 13/145 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R KLLSP VRP + +K + F+IL L DL+ G+G+
Sbjct: 1 MRIISGKKRGLKLLSPVDYSVRPTTDKIKESIFNILFEIDYNSIVL------DLFCGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG +V+F + + NLE + FLD S I + +++ F
Sbjct: 55 IGIEFLSRGAKKVYFCDFSEDSLKTTK-KNLENSEFLDKSIIIN---KDYMDCLNYFYNN 110
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYPL 253
FDY+ + PPY YE ++ L
Sbjct: 111 GLKFDYIFLDPPYK---YEYIKKAL 132
>gi|197301676|ref|ZP_03166746.1| hypothetical protein RUMLAC_00402 [Ruminococcus lactaris ATCC
29176]
gi|197299116|gb|EDY33646.1| RNA methyltransferase, RsmD family [Ruminococcus lactaris ATCC
29176]
Length = 189
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 76/144 (52%), Gaps = 12/144 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR KL + +G+D RP + +K F+++ L +LDL++G+G
Sbjct: 1 MRVIAGSARSLKLKTLEGIDTRPTTDRIKETLFNMI------APYLYDCEFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E FVE +P + + NL++T T V L + E
Sbjct: 55 IGIEALSRGAKEAVFVEKNPKAME-CIKENLKFTRLEKKGITLTKDVLNALYQLEG---- 109
Query: 229 DGPFDYMSVTPPY-TAVDYEVVEY 251
D FDY+ + PPY ++ +V++Y
Sbjct: 110 DKVFDYIFMDPPYDQELEKQVLKY 133
>gi|375012032|ref|YP_004989020.1| RNA methyltransferase, RsmD family [Owenweeksia hongkongensis DSM
17368]
gi|359347956|gb|AEV32375.1| RNA methyltransferase, RsmD family [Owenweeksia hongkongensis DSM
17368]
Length = 185
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 15/160 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++++ GK R +K+ +PK + VRP + K + F+IL + LDL SGTG
Sbjct: 1 MIRIISGKHRGRKIQAPKNLPVRPTTDRAKESLFNILNNH----FYFDEVTALDLCSGTG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++ E SRGC ++ ++ + + + E L++ ++H R E F QFV
Sbjct: 57 NISYELASRGCPDIIAIDDNQACIKFI----QETAEKLEMDTLHAFRAEIF-----QFVE 107
Query: 228 KDGP-FDYMSVTPPYTAVDYE-VVEYPLRTDMLDTCGCLV 265
KD +D + PP+ YE +VE ++L G LV
Sbjct: 108 KDSKTYDLIFADPPFDFDQYEKLVEKIFEKNLLSEEGFLV 147
>gi|424834145|ref|ZP_18258861.1| putative methyltransferase [Clostridium sporogenes PA 3679]
gi|365978920|gb|EHN14986.1| putative methyltransferase [Clostridium sporogenes PA 3679]
Length = 185
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 10/134 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+LSP+ RP ++ +K + F+I+Q+ + R LD+++GTGS
Sbjct: 1 MRIISGSARGRKILSPQSSVTRPTLDRIKESIFNIIQN------QVYGSRVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG + V+ P +L N+ F D+ + + L E+F K
Sbjct: 55 LGLEAASRGAKFSYLVDKSPETYP-LLRENIRNLKFEDLCKSFNMDAYSAL---EEFARK 110
Query: 229 DGPFDYMSVTPPYT 242
FD + + PPY
Sbjct: 111 SIVFDLIFIDPPYA 124
>gi|408670833|ref|YP_006870904.1| hypothetical protein BgCN_0207 [Borrelia garinii NMJW1]
gi|407240655|gb|AFT83538.1| hypothetical protein BgCN_0207 [Borrelia garinii NMJW1]
Length = 178
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 17/135 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ V GK + +K+L PK VRP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 1 MYVSSGKYKGRKILFPKTGVVRPVMSLVREAFFSIIFK------DIINSKFLDVFAGTGI 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EA+SRG S H VE + L+ N + V + + F +RAE F+G
Sbjct: 55 MSVEALSRGASLAHLVECNKK-AKITLVKNFSF-----VEEFY----KFFFQRAEDFLGK 104
Query: 228 KDGPFDYMSVTPPYT 242
KD +D++ + PP+
Sbjct: 105 KDLFYDFIYLDPPFN 119
>gi|159897268|ref|YP_001543515.1| methyltransferase [Herpetosiphon aurantiacus DSM 785]
gi|159890307|gb|ABX03387.1| putative methyltransferase [Herpetosiphon aurantiacus DSM 785]
Length = 191
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 28/190 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ ++L P + RPM++ VK + F IL+ GR LDL++GTGS
Sbjct: 1 MRVITGSAKGRQLKGPPDIGTRPMLDRVKESLFGILEGFNAFE-----GRALDLFAGTGS 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG FVE V + V NL+ T + + + V V+ FL Q + +
Sbjct: 56 LGIECLSRGAEWADFVEARSHVAA-VTKDNLKTTKLAERAKVWNVSVDKFL----QIIDE 110
Query: 229 DGPFDYMSVTPPYTAVDY-EVVEYPLRTDMLDTCGCLV-----------------KIKDR 270
+ + + PPY ++V +LD G LV +K R
Sbjct: 111 KTKYAIILLDPPYAMEGIPDLVVRVAEHGILDPNGVLVLGHWPKLVMPPQLGPLSLLKHR 170
Query: 271 RFGRTHLAIY 280
R G + +IY
Sbjct: 171 RIGDSCFSIY 180
>gi|223992627|ref|XP_002285997.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977312|gb|EED95638.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 240
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 102/221 (46%), Gaps = 42/221 (19%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAG---------GCPASLRPGRW 159
L++LGG R +KL SP + +RPMM VK A + S G G R
Sbjct: 16 LRILGGSVRGRKLESPT-VYLRPMMGKVKEAVYSTFTSFGLYENNQNIGGGGTGTCSTRH 74
Query: 160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
LD++SG+GSVG+E++SRG FV+M N+ G ++ + V + F
Sbjct: 75 LDIFSGSGSVGLESLSRGARHCTFVDMSNDCCG-ACERNIVRCGGEPIAKV--VCTDAFR 131
Query: 220 E-RAEQFVGKD--GPFDYMSVTPPYTAVDYE------------------VVEYPLRTDML 258
R + VG D +D +++ PPY + Y ++EYP+ L
Sbjct: 132 ALRQPETVGIDPSCKYDLVTLCPPYEEIVYADLLDAVANSELVTEDTVILIEYPVELGCL 191
Query: 259 ------DTCGCLVKIKDRRFGRTHLAIY--GPDWAQKKRKS 291
+ G L+ I++R++GRT +A+Y P A++ +S
Sbjct: 192 PHAIGREDGGVLIGIRNRKYGRTVIAMYIVNPTGARETAES 232
>gi|315658560|ref|ZP_07911432.1| RsmD family RNA methyltransferase [Staphylococcus lugdunensis
M23590]
gi|315496889|gb|EFU85212.1| RsmD family RNA methyltransferase [Staphylococcus lugdunensis
M23590]
Length = 190
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L + G LDL++G+G+
Sbjct: 8 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLHNVSGLG--------LDLFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG +V FV+ + + V+ NL+ + + ++ + L+ + +
Sbjct: 60 LGIEGLSRGMDKVIFVDQNFKAIK-VIQANLQQLDLTEQAEVYKNNADRALKALNK---R 115
Query: 229 DGPFDYMSVTPPYT 242
D FDY+ + PPY
Sbjct: 116 DIQFDYIFLDPPYN 129
>gi|291538909|emb|CBL12020.1| RNA methyltransferase, RsmD family [Roseburia intestinalis XB6B4]
Length = 184
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 14/159 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAG-GCPASLRPGRWLDLYSGTG 167
++++ G AR L + +G+D RP + +K F+I+Q GC +LDL++G+G
Sbjct: 1 MRIIAGTARSLPLKTVEGLDTRPTTDRIKETLFNIIQDEIPGC-------YFLDLFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+G+EA+SRG FVE + + V N+ +T F + ++ V + L E G
Sbjct: 54 QMGLEAVSRGAQYAVFVENNKKAAACVE-DNIRFTKFTKETKLYNSDVLSALRAME---G 109
Query: 228 KDGPFDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGCLV 265
K FD + + PPY ++Y+V+ Y + +L G ++
Sbjct: 110 K-YRFDIIFMDPPYKQELEYDVLSYLKDSSLLKENGIII 147
>gi|210622471|ref|ZP_03293176.1| hypothetical protein CLOHIR_01124 [Clostridium hiranonis DSM 13275]
gi|210154184|gb|EEA85190.1| hypothetical protein CLOHIR_01124 [Clostridium hiranonis DSM 13275]
Length = 189
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 91/202 (45%), Gaps = 52/202 (25%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR KL PK VRP + VK + F+I+ S + LDL++G+GS
Sbjct: 1 MRVISGKARGLKLNPPKDQSVRPTTDRVKESLFNIINSY------VMDANVLDLFAGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE---TFLERAEQF 225
+GIE +SRG F ++ + + S+I RVE T + + +
Sbjct: 55 LGIECLSRGAEHCVFSDLSKESIKIIQ------------SNIKKARVERESTVINKDYKN 102
Query: 226 VGKD-----GPFDYMSVTPPYTAVDYE----------------------VVEYPLRTDML 258
V D FD + + PPY YE VVE+ + ++
Sbjct: 103 VISDMGIKKQEFDIIMLDPPY----YEGLFVDCIERIDKNQILSEDGVIVVEHDKKDELP 158
Query: 259 DTCGCLVKIKDRRFGRTHLAIY 280
D G +VK+K++++G T L+ Y
Sbjct: 159 DEIGNIVKVKEKKYGITVLSFY 180
>gi|209886354|ref|YP_002290211.1| methyltransferase [Oligotropha carboxidovorans OM5]
gi|337740107|ref|YP_004631835.1| methyltransferase [Oligotropha carboxidovorans OM5]
gi|386029124|ref|YP_005949899.1| putative methyltransferase [Oligotropha carboxidovorans OM4]
gi|209874550|gb|ACI94346.1| putative methyltransferase [Oligotropha carboxidovorans OM5]
gi|336094192|gb|AEI02018.1| putative methyltransferase [Oligotropha carboxidovorans OM4]
gi|336097771|gb|AEI05594.1| putative methyltransferase [Oligotropha carboxidovorans OM5]
Length = 184
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 72/133 (54%), Gaps = 8/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GGK R + + SP ++RP + ++ + F+IL A G PA R LDL++GTG+
Sbjct: 1 MRVVGGKMRGRSIASPASQEIRPTQDRLRESLFNILMHAYGNPAL--DARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + F++ + +L N+E G V+ ++ R T L A
Sbjct: 59 LGIEAVSRGAAFTLFID-NGAAARALLRNNVEALGLGGVTKVYR-RDATALGPAHPME-- 114
Query: 229 DGPFDYMSVTPPY 241
PF + PPY
Sbjct: 115 --PFTLAFLDPPY 125
>gi|392394769|ref|YP_006431371.1| RsmD family RNA methyltransferase [Desulfitobacterium dehalogenans
ATCC 51507]
gi|390525847|gb|AFM01578.1| RNA methyltransferase, RsmD family [Desulfitobacterium dehalogenans
ATCC 51507]
Length = 180
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 74/133 (55%), Gaps = 13/133 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R ++L + GM+ RP + +KGA F++L+ + R LDL+SGTG+
Sbjct: 1 MRIIAGYYRGQRLKTVPGMNTRPTADKIKGAIFNVLRE------KIAGARVLDLFSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG E +E +++ N+E G ++ + + T+ T+LE+ + V
Sbjct: 55 LALEALSRGAKEAVLIE-KSHTAQHIIRENIEHMG-VENARLVTMDAFTYLEQHGEEV-- 110
Query: 229 DGPFDYMSVTPPY 241
FD + + PPY
Sbjct: 111 ---FDLIFIDPPY 120
>gi|291531108|emb|CBK96693.1| RNA methyltransferase, RsmD family [Eubacterium siraeum 70/3]
Length = 184
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 82/188 (43%), Gaps = 29/188 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +KL +P+G+DVRP + VK A F +Q LDL+SG+G
Sbjct: 1 MRVITGTARGRKLTAPEGLDVRPTKDSVKEAIFSAIQ------FETEGSVVLDLFSGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + + V+ + + N+ GF I + FL +
Sbjct: 55 LGIEAVSRGAKKAYLVDSSQNSI-KFIKQNVAHVGFESQCEIVNMPNSAFLRTTGE---- 109
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDT----C----GC--------LVKIKDRRF 272
FD + PPY + L M DT C GC V K +++
Sbjct: 110 --KFDIALLDPPYEKSLIQRSLPALTEKMKDTGVIICEHEPGCRLPEEINGFVITKSKKY 167
Query: 273 GRTHLAIY 280
G+T L Y
Sbjct: 168 GKTALTFY 175
>gi|373857201|ref|ZP_09599943.1| methyltransferase [Bacillus sp. 1NLA3E]
gi|372452851|gb|EHP26320.1| methyltransferase [Bacillus sp. 1NLA3E]
Length = 185
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 30/194 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK++ K L + G RP + VK A F+I+ G LDL++G+G
Sbjct: 1 MRVVSGKSKGKILKAVPGNTTRPTTDKVKEAIFNII------GPYFEGGIGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG +V FV+ D + + N+++ + S I+ R E RA + + K
Sbjct: 55 LGIEGLSRGLEKVIFVDRDGKAIQTIK-ENIKFCNLDEYSEIY--RNEA--NRALKAINK 109
Query: 229 DG-PFDYMSVTPPY---------TAVDYE---------VVEYPLRTDMLDTCGCLVKIKD 269
G FD + + PPY T +D+ V E+ ++ + G L +IK
Sbjct: 110 RGLSFDVVFLDPPYKQQQLLSLMTELDHNRIIVPKGIIVCEHSHEVELPEAIGNLHQIKQ 169
Query: 270 RRFGRTHLAIYGPD 283
++G H+ I+ D
Sbjct: 170 EQYGIIHITIFEND 183
>gi|203284126|ref|YP_002221866.1| N6-adenine-specific methylase [Borrelia duttonii Ly]
gi|201083569|gb|ACH93160.1| N6-adenine-specific methylase [Borrelia duttonii Ly]
Length = 209
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 25/154 (16%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
L++V GK + K+ P+ VRP+M +++ A F IL + + +LD+++GTG
Sbjct: 28 LMRVSSGKYKGWKVACPRVGYVRPVMAIIREAFFSILFN------QISGINFLDVFTGTG 81
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ +EA+SRG S VH V+ + + NVLI N + I + F +AE F+
Sbjct: 82 IMSLEALSRGASLVHLVDYNKF-SKNVLIKNFD---------IVNEPYKFFFTKAEFFLA 131
Query: 228 K-DGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDT 260
K D +D + + PP+ YPL+ ++L+
Sbjct: 132 KRDLFYDLIYLDPPFN--------YPLKKNLLEI 157
>gi|406978568|gb|EKE00508.1| hypothetical protein ACD_22C00002G0002 [uncultured bacterium]
Length = 193
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 92/190 (48%), Gaps = 33/190 (17%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L++ G A+ KKL P+ +R + E+ K A F IL + LDLY+G+G+
Sbjct: 14 LRITSGSAKNKKLTVPEVPGIRAVQEITKLAIFSIL------GEKVLNAACLDLYAGSGN 67
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + F++ + W + N+++ GF + + ET L A +FV
Sbjct: 68 MGLEALSRGANWCDFID-NNWNAKQAIEKNIKFCGFEE-------KAETHLSEAVKFVAN 119
Query: 229 -DGPFDYMSVTPPYTAVDY--------EVVE-----YPLRTDMLD-----TCGCLVKIKD 269
+ +D + P Y +++ EV+ + L +D L+ T LV
Sbjct: 120 TENKYDVVFCDPFYDDLNHKFLIKNMGEVLNTDGYIFFLHSDKLNMENLLTETSLVMESQ 179
Query: 270 RRFGRTHLAI 279
R++G+T L+I
Sbjct: 180 RKYGKTLLSI 189
>gi|226321524|ref|ZP_03797050.1| putative methyltransferase [Borrelia burgdorferi Bol26]
gi|226232713|gb|EEH31466.1| putative methyltransferase [Borrelia burgdorferi Bol26]
Length = 189
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 17/136 (12%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ V GK + KK+L PK VRP++ +V+ A F I+ + ++LD+++GTG
Sbjct: 11 FMYVSSGKYKGKKILFPKNGSVRPVISLVREAFFSIIFK------DIVNSKFLDVFAGTG 64
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ +EA+SRG S H VE + + L+ N + V + + F +RAE F+
Sbjct: 65 IMSVEALSRGASLAHLVECNRK-IKITLVENFSF-----VEEFY----KFFFQRAEDFLS 114
Query: 228 -KDGPFDYMSVTPPYT 242
KD +D++ + PP+
Sbjct: 115 KKDLFYDFIYLDPPFN 130
>gi|224531595|ref|ZP_03672227.1| putative methyltransferase [Borrelia valaisiana VS116]
gi|224511060|gb|EEF81466.1| putative methyltransferase [Borrelia valaisiana VS116]
Length = 189
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 17/136 (12%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ V GK + KK+L PK VRP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 11 FMYVSSGKYKGKKILFPKTCSVRPVMSLVREAFFSIIFK------DIVDSKFLDVFAGTG 64
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ +EA+SRG S H VE + L+ N + V + + F +RAE F+
Sbjct: 65 IMSVEALSRGASLAHLVECNRK-TRITLMKNFSF-----VEEFY----KFFFQRAEDFLS 114
Query: 228 -KDGPFDYMSVTPPYT 242
KD +D++ + PP+
Sbjct: 115 KKDLFYDFIYLDPPFN 130
>gi|149177894|ref|ZP_01856492.1| N6-adenine-specific methylase [Planctomyces maris DSM 8797]
gi|148843234|gb|EDL57599.1| N6-adenine-specific methylase [Planctomyces maris DSM 8797]
Length = 201
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 28/147 (19%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK RR+KL S G RP+ + VK F+ L +++ R D+YSGTGS
Sbjct: 1 MRIIAGKYRRRKLHSNPGQTTRPITDFVKEVLFEWLGD------TVKDKRVADIYSGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD----------VSSIHTVRVETF 218
+G+EA+SRG + V F+E D + +L N+E G D +SS V F
Sbjct: 55 LGLEALSRGAASVVFIEQD-YKAHELLKRNVENIGAEDTTLCWKTNALLSSFRPKNVPDF 113
Query: 219 LERAEQFVGKDGPFDYMSVTPPYTAVD 245
+ PF + + PPY +D
Sbjct: 114 V-----------PFSLIFLDPPYKMID 129
>gi|71082860|ref|YP_265579.1| N-6 adenine-specific DNA methylase [Candidatus Pelagibacter ubique
HTCC1062]
gi|91762717|ref|ZP_01264682.1| N6-adenine-specific methylase [Candidatus Pelagibacter ubique
HTCC1002]
gi|71061973|gb|AAZ20976.1| N6-adenine-specific methylase [Candidatus Pelagibacter ubique
HTCC1062]
gi|91718519|gb|EAS85169.1| N6-adenine-specific methylase [Candidatus Pelagibacter ubique
HTCC1002]
Length = 188
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 81/158 (51%), Gaps = 6/158 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + KK+L PK RP+ ++ K + F+IL+ + L LDL+SG GS
Sbjct: 1 MRIISGNFKGKKILLPKDKLTRPLKDLTKESIFNILKHSKLLNVELENSNILDLFSGVGS 60
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
G+E +SRG + F+E V+ N+L N++ + + I + + F E + +
Sbjct: 61 FGLECLSRGARNITFLESYTEVL-NILKKNIDNLNQQNQTKI--IEKDIFSENTLKLL-- 115
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYPL-RTDMLDTCGCLV 265
+ FD + + PPY + + + ++L+T G ++
Sbjct: 116 NDKFDIIFMDPPYKEKKLPFLLNAITKLELLNTDGIII 153
>gi|86742287|ref|YP_482687.1| hypothetical protein Francci3_3606 [Frankia sp. CcI3]
gi|86569149|gb|ABD12958.1| conserved hypothetical protein 95 [Frankia sp. CcI3]
Length = 185
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 11/143 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G A ++L+ P G RP E + F+ L + LR R DLY+G+G
Sbjct: 1 MTRIISGTAGGRRLVVPPGTTTRPTSERAREGLFNTLSTC----LDLRGARIADLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG + V+ DP VV L N+ G L + I VE ++
Sbjct: 57 AVGLEALSRGATHALLVDRDP-VVIRTLRRNVTALG-LSGAKIAQAAVERVVQNT----- 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVVE 250
D P+D + + PPY D E+ E
Sbjct: 110 SDNPYDVVFLDPPYAMRDSELGE 132
>gi|291536223|emb|CBL09335.1| RNA methyltransferase, RsmD family [Roseburia intestinalis M50/1]
Length = 188
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 14/159 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAG-GCPASLRPGRWLDLYSGTG 167
++++ G AR L + +G+D RP + +K F+I+Q GC +LDL++G+G
Sbjct: 5 MRIIAGTARSLPLKTVEGLDTRPTTDRIKETLFNIIQDEIPGC-------YFLDLFAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+G+EA+SRG FVE + + V N+ +T F + ++ V + L E G
Sbjct: 58 QMGLEAVSRGAQYAVFVENNKKAAACVE-DNIRFTKFTKETKLYNSDVLSALRAME---G 113
Query: 228 KDGPFDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGCLV 265
K FD + + PPY ++Y+V+ Y + +L G ++
Sbjct: 114 K-YRFDIIFMDPPYKQELEYDVLSYLKDSSLLKENGIII 151
>gi|337292454|emb|CCB90476.1| putative rRNA methyltransferase ylbH [Waddlia chondrophila 2032/99]
Length = 193
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 88/170 (51%), Gaps = 21/170 (12%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+LQ++GGK +RKKL SPKG++ RP ++ FDI C + R+LDL+SG+G
Sbjct: 9 MLQIIGGKLKRKKLKSPKGLNTRPTSSRLRETVFDI------CQQEIERARFLDLFSGSG 62
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
S+GIEA+SRG FV+ D + + N++ G D + + + +
Sbjct: 63 SMGIEALSRGAGSAVFVDHDRGSI-RCIQENIQELGLADCA-------RAVIGDVIKLLP 114
Query: 228 KDGPFDYMSVTPPYTAVD------YEVVEYPLRTDMLDTCGCLVKIKDRR 271
K G FD + V PPY + EV++ ++D+L G L I+D R
Sbjct: 115 KLGTFDVIYVDPPYFEKNRDFSHSAEVLKAIDQSDLLAHGGMLF-IEDSR 163
>gi|218682692|ref|ZP_03530293.1| hypothetical protein RetlC8_28133 [Rhizobium etli CIAT 894]
Length = 186
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK ++RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNEIRPTADRTRESLFNILSHA--YPDCVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHG-RTRILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPY 241
G PFD + PPY
Sbjct: 111 GNLEPFDVLFADPPY 125
>gi|119356843|ref|YP_911487.1| hypothetical protein Cpha266_1016 [Chlorobium phaeobacteroides DSM
266]
gi|119354192|gb|ABL65063.1| conserved hypothetical protein 95 [Chlorobium phaeobacteroides DSM
266]
Length = 178
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 11/141 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+Q++ GK + K+ + VRP VK + FD L + S+ LDL++G GS
Sbjct: 1 MQIIAGKYKGNKIRRTDTLAVRPCSSRVKKSLFDTLSARMDFEGSI----VLDLFAGFGS 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EA+SRG V+FV+ + ++ L G D SSI V FL+R +
Sbjct: 57 LGFEALSRGSEFVYFVDQHTDALKSMKSTALHL-GVTDKSSIVNSDVTAFLDRTTE---- 111
Query: 229 DGPFDYMSVTPPYTAVDYEVV 249
FD + PPYT DYE++
Sbjct: 112 --QFDLVFCDPPYTWPDYELL 130
>gi|187934826|ref|YP_001885427.1| RNA methyltransferase, RsmD family [Clostridium botulinum B str.
Eklund 17B]
gi|187722979|gb|ACD24200.1| RNA methyltransferase, RsmD family [Clostridium botulinum B str.
Eklund 17B]
Length = 185
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 95/198 (47%), Gaps = 42/198 (21%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR +KL+ P M+ RP ++ VK A F ++Q G P S +D+++GTGS
Sbjct: 1 MRIISGKARGRKLIPPASMETRPTLDRVKEAMFSMIQ--GYIPDS----NVIDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFV----EMDPWVVSNVLIPNLEWTGF---LDVSSIHTVRVETFLER 221
+G+EA SRG EV+ + E P + N I +L++ F L++ S +R
Sbjct: 55 LGLEAASRGAKEVYLIDKSSETFPLLKEN--IKSLKFDDFCFGLNMDSYEALR------- 105
Query: 222 AEQFVGKDGPFDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLVK-------------- 266
+ + F+ + + PPY + + +E +++L G +V
Sbjct: 106 --KLSNQGKVFELIFIDPPYCKEMIPKAIEIIKESNILSENGIIVTKIDTIEEIYDGYED 163
Query: 267 ---IKDRRFGRTHLAIYG 281
IK R++G T + Y
Sbjct: 164 IILIKSRKYGNTTVCFYA 181
>gi|424888461|ref|ZP_18312064.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393174010|gb|EJC74054.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 186
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK ++RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNEIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHG-RTRILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPY 241
G PFD + PPY
Sbjct: 111 GNLEPFDVLFADPPY 125
>gi|258514453|ref|YP_003190675.1| methyltransferase [Desulfotomaculum acetoxidans DSM 771]
gi|257778158|gb|ACV62052.1| methyltransferase [Desulfotomaculum acetoxidans DSM 771]
Length = 183
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 73/133 (54%), Gaps = 10/133 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + ++L SP + +RP + VK A F+I++ P S+ +LDL++GTG+
Sbjct: 1 MRVISGSVKGRRLKSPGNLKIRPTADRVKEALFNIIRDR--VPGSI----FLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG S V FVE + ++ NL TGF D +++ + + K
Sbjct: 55 IGIEALSRGASMVVFVEQH-YKTIQLIKENLGLTGFNDYATLLKGNIPSCFSSLGAMSYK 113
Query: 229 DGPFDYMSVTPPY 241
+D + + PPY
Sbjct: 114 ---YDLIFMDPPY 123
>gi|167037713|ref|YP_001665291.1| putative methyltransferase [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|167040374|ref|YP_001663359.1| putative methyltransferase [Thermoanaerobacter sp. X514]
gi|166854614|gb|ABY93023.1| putative methyltransferase [Thermoanaerobacter sp. X514]
gi|166856547|gb|ABY94955.1| putative methyltransferase [Thermoanaerobacter pseudethanolicus
ATCC 33223]
Length = 186
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 92/192 (47%), Gaps = 32/192 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+V+ GK + +K+ S +G +VRP + VK + F+IL + + +LDL++GTG+
Sbjct: 3 LRVIAGKLKGRKVKSLEGNEVRPTADRVKESLFNILMN------KIEGSIFLDLFAGTGN 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
+GIEA+SRG +FV+ + + + L F + ++V L++
Sbjct: 57 IGIEALSRGAQFCYFVDKSLKSIKCIRENVTELNLVPFAKILHRDVLKVIEMLDK----- 111
Query: 227 GKDGPFDYMSVTPPY--TAVDYEVV----------------EYPLRTDMLDTCGCLVKIK 268
+ FD + + PPY VD ++ E+ + + G LVKI+
Sbjct: 112 -NNTKFDIIFLDPPYYQNLVDKTLIKLGEAKVLKEDGIVIAEHHKNDKVREMYGNLVKIR 170
Query: 269 DRRFGRTHLAIY 280
+ ++G T L+ Y
Sbjct: 171 ENKYGETILSFY 182
>gi|317050822|ref|YP_004111938.1| methyltransferase [Desulfurispirillum indicum S5]
gi|316945906|gb|ADU65382.1| methyltransferase [Desulfurispirillum indicum S5]
Length = 182
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 16/159 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R +L +PKG VRP + V+ F++L +L+ R+LDL+ G+G+
Sbjct: 1 MRIISGTRRGMRLSAPKGDAVRPTADAVRENLFNLLGQ------NLQGKRFLDLFGGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA SRG S V VE P + V N++ + ++ +L R+ Q
Sbjct: 55 VGLEAASRGASVV-IVEKSPLALRCVE-QNIQHCRLQEQVTVQRGDALAYLARSPQ---- 108
Query: 229 DGPFDYMSVTPPYTAVDY--EVVEYPLRTDMLDTCGCLV 265
FD + V PP+ Y EV+E + +L T G LV
Sbjct: 109 --SFDVIFVDPPFDQTHYYGEVMEKVANSSVLATDGLLV 145
>gi|424898491|ref|ZP_18322065.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393182718|gb|EJC82757.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 186
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK ++RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNEIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHG-RTRILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPY 241
G PFD + PPY
Sbjct: 111 GNLEPFDVLFADPPY 125
>gi|226525311|gb|ACO70910.1| conserved hypothetical protein [uncultured Verrucomicrobia
bacterium]
Length = 187
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 74/134 (55%), Gaps = 14/134 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A L +P+ D+RP M+ V+GA FD L A P + R LDL++G+G+
Sbjct: 1 MRVIAGTAGGIPLHTPR-TDLRPTMDKVRGAIFDSLGDA--VPGA----RVLDLFAGSGA 53
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + V FVE D V+ + N E T ++ V +FL+R F
Sbjct: 54 LGLEALSRGAASVTFVEKDRAAVATI-HRNFEKTRL--SGTVQAADVFSFLDR---FAAP 107
Query: 229 DGPFDYMSVTPPYT 242
+ FD + PPY+
Sbjct: 108 ES-FDLILADPPYS 120
>gi|203287664|ref|YP_002222679.1| N6-adenine-specific methylase, putative [Borrelia recurrentis A1]
gi|201084884|gb|ACH94458.1| N6-adenine-specific methylase, putative [Borrelia recurrentis A1]
Length = 198
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 25/154 (16%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
L++V GK + K+ P+ VRP+M +++ A F IL + + +LD+++GTG
Sbjct: 17 LMRVSSGKYKGWKVACPRVGYVRPVMAIIREAFFSILFN------QISGINFLDVFTGTG 70
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ +EA+SRG S VH V+ + + NVLI N + I + F +AE F+
Sbjct: 71 IMSLEALSRGASLVHLVDYNKF-SKNVLIKNFD---------IVNEPYKFFFTKAEFFLA 120
Query: 228 K-DGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDT 260
K D +D + + PP+ YPL+ ++L+
Sbjct: 121 KRDLFYDLIYLDPPFN--------YPLKKNLLEI 146
>gi|224102941|ref|XP_002334108.1| predicted protein [Populus trichocarpa]
gi|222869582|gb|EEF06713.1| predicted protein [Populus trichocarpa]
Length = 62
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 40/65 (61%), Gaps = 18/65 (27%)
Query: 115 KARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAI 174
K RKKL SP MDVRP+MEVV+ GRWLDL SGTGSVGIEAI
Sbjct: 16 KPLRKKLRSPNAMDVRPVMEVVEA------------------GRWLDLLSGTGSVGIEAI 57
Query: 175 SRGCS 179
SRGCS
Sbjct: 58 SRGCS 62
>gi|218290491|ref|ZP_03494611.1| methyltransferase [Alicyclobacillus acidocaldarius LAA1]
gi|218239512|gb|EED06707.1| methyltransferase [Alicyclobacillus acidocaldarius LAA1]
Length = 184
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 26/187 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ R L SP+G VRP + VK + F+++ P L G +DL++GTG+
Sbjct: 1 MRVIAGRWRGVSLESPRGGAVRPTTDRVKESMFNLI------PHQLE-GLVIDLFAGTGA 53
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG S FV+ DP + ++ NL+ G +S V V + +F
Sbjct: 54 LGIEALSRGASRAIFVDKDP-RSARLVRRNLDRVG---AASQAEVWVLDWARALRRFEAS 109
Query: 229 DGPFDYMSVTPPYTAVDY---------------EVVEYPLRTDMLDTCGCLVKIKDRRFG 273
+ Y+ V PPY + V E P D+ D G V K R++G
Sbjct: 110 EEVAAYVFVDPPYQEQLWIPVLRALPASRVSGAVVCEAPASLDLPDEVGEFVLQKARKYG 169
Query: 274 RTHLAIY 280
+ IY
Sbjct: 170 DIAVRIY 176
>gi|15835388|ref|NP_297147.1| hypothetical protein TC0774 [Chlamydia muridarum Nigg]
gi|270285565|ref|ZP_06194959.1| hypothetical protein CmurN_03933 [Chlamydia muridarum Nigg]
gi|270289576|ref|ZP_06195878.1| hypothetical protein CmurW_04033 [Chlamydia muridarum Weiss]
gi|301336962|ref|ZP_07225164.1| hypothetical protein CmurM_03990 [Chlamydia muridarum MopnTet14]
gi|7190800|gb|AAF39577.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
Length = 186
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 85/164 (51%), Gaps = 23/164 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + VRP VVK A F+I C + R+LDL++G+GS
Sbjct: 1 MKILAGKFKGKSLKTFSNPAVRPTSGVVKEAVFNI------CANHIVGARFLDLFAGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLI-PNLEWTGFLDVSS-IHTVR--VETFLERAEQ 224
+G EAISRG V FV D V + LI NL LD + +H ++ V + L R
Sbjct: 55 MGFEAISRGAGSVTFV--DSSVDAIRLIRANL---ALLDNNLPVHILKQDVRSALLR--- 106
Query: 225 FVGKDG-PFDYMSVTPPYT---AVDYEVVEYPLRTDMLDTCGCL 264
+GK FD + V PPY+ A EV+ Y ++ +LD G L
Sbjct: 107 -LGKQKRAFDVIYVDPPYSLENAFLQEVLSYVVQQSLLDPEGIL 149
>gi|297620377|ref|YP_003708514.1| methyltransferase [Waddlia chondrophila WSU 86-1044]
gi|297375678|gb|ADI37508.1| methyltransferase [Waddlia chondrophila WSU 86-1044]
Length = 185
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 88/170 (51%), Gaps = 21/170 (12%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+LQ++GGK +RKKL SPKG++ RP ++ FDI C + R+LDL+SG+G
Sbjct: 1 MLQIIGGKLKRKKLKSPKGLNTRPTSSRLRETVFDI------CQQEIERARFLDLFSGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
S+GIEA+SRG FV+ D + + N++ G D + + + +
Sbjct: 55 SMGIEALSRGAGSAVFVDHDRGSI-RCIQENIQELGLADCA-------RAVIGDVIKLLP 106
Query: 228 KDGPFDYMSVTPPYTAVD------YEVVEYPLRTDMLDTCGCLVKIKDRR 271
K G FD + V PPY + EV++ ++D+L G L I+D R
Sbjct: 107 KLGTFDVIYVDPPYFEKNRDFSHSAEVLKAIDQSDLLAHGGMLF-IEDSR 155
>gi|228476280|ref|ZP_04060982.1| RNA methyltransferase, RsmD family [Staphylococcus hominis SK119]
gi|314936688|ref|ZP_07844035.1| RNA methyltransferase, RsmD family [Staphylococcus hominis subsp.
hominis C80]
gi|418620386|ref|ZP_13183190.1| RNA methyltransferase, RsmD family [Staphylococcus hominis VCU122]
gi|228269683|gb|EEK11185.1| RNA methyltransferase, RsmD family [Staphylococcus hominis SK119]
gi|313655307|gb|EFS19052.1| RNA methyltransferase, RsmD family [Staphylococcus hominis subsp.
hominis C80]
gi|374822516|gb|EHR86536.1| RNA methyltransferase, RsmD family [Staphylococcus hominis VCU122]
Length = 183
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKPLESLEGRNTRPTMDKVKEGIFNSLHEVYGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL+ + S ++ + L+ + +
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-VIQANLKQLNLEEQSEVYKNNADRALKAINK---R 108
Query: 229 DGPFDYMSVTPPYT 242
D FD++ + PPY
Sbjct: 109 DIQFDFIFLDPPYN 122
>gi|239636372|ref|ZP_04677374.1| RNA methyltransferase, RsmD family [Staphylococcus warneri L37603]
gi|239597727|gb|EEQ80222.1| RNA methyltransferase, RsmD family [Staphylococcus warneri L37603]
Length = 180
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 12/133 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGIHKSKALESLEGRNTRPTMDKVKEGIFNSLHEVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL+ + S ++ + L + +
Sbjct: 53 LGIEALSRGMEKVIFVDQNFKAVK-VIKSNLKQLDLMSQSEVYKNNADRAL---KALAKR 108
Query: 229 DGPFDYMSVTPPY 241
D FDY+ + PPY
Sbjct: 109 DIQFDYIFLDPPY 121
>gi|254490497|ref|ZP_05103683.1| putative methyltransferase [Methylophaga thiooxidans DMS010]
gi|224464241|gb|EEF80504.1| putative methyltransferase [Methylophaga thiooxydans DMS010]
Length = 196
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 34/191 (17%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GG R +KL P+ +RP + V+ F+ LQ G R LDL++G+G+
Sbjct: 13 LRIIGGIWRGRKLGFPEVEGLRPTGDRVRETVFNWLQPILG------DSRCLDLFAGSGA 66
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+G+EA SRG EV VE D +L NL ++++ + + F RAEQF+
Sbjct: 67 LGLEAASRGAGEVVLVETDR-SAYQLLQSNL--------TALNASQCQLFHGRAEQFLAS 117
Query: 228 KDGPFDYMSVTPPYTAVDYEVV------------------EYPLRTDMLDTCGCLVKIKD 269
+ FD + + PPY + + + EYP R DM D +++
Sbjct: 118 QKQAFDVVFIDPPYQSNMWTQIAQLLSERHLLNDGARIYLEYPRRQDMPDLPSSWHLLRE 177
Query: 270 RRFGRTHLAIY 280
++ G ++
Sbjct: 178 KQAGDVKYCLF 188
>gi|410584622|ref|ZP_11321724.1| RNA methyltransferase, RsmD family [Thermaerobacter subterraneus
DSM 13965]
gi|410504208|gb|EKP93720.1| RNA methyltransferase, RsmD family [Thermaerobacter subterraneus
DSM 13965]
Length = 199
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 85/190 (44%), Gaps = 28/190 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V GG+ R + L P G VRP + V+ A F+IL A + R LDL++GTGS
Sbjct: 1 MRVTGGRWRGRPLKVPAGRQVRPTTDRVRQALFNILGRA------VEGARVLDLFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG E +E DP VV+ VL NL + R + F A + G
Sbjct: 55 LAIEALSRGAREALCIESDPRVVA-VLKANLHAV--GAGAGAAVWRQDVFAAVA-KLAGG 110
Query: 229 DGPFDYMSVTPPY---------TAV---------DYEVVEYPLRTDMLDTCGCLVKIKDR 270
FD + PPY AV VVE+ R + D L R
Sbjct: 111 SRVFDLILADPPYRQGLAARVVAAVGDGRLLAPGGRLVVEHDPREVLPDGVAGLECADRR 170
Query: 271 RFGRTHLAIY 280
R+G T L+ Y
Sbjct: 171 RYGDTALSFY 180
>gi|262276795|ref|ZP_06054588.1| RNA methyltransferase, RsmD family [alpha proteobacterium HIMB114]
gi|262223898|gb|EEY74357.1| RNA methyltransferase, RsmD family [alpha proteobacterium HIMB114]
Length = 187
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + KK+L P RP+ + VK F++L+ + + + + LD +SG+GS
Sbjct: 1 MRIISGNKKGKKILLPNPEITRPLKDNVKENIFNVLKHSRNFQINFQGIKVLDFFSGSGS 60
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
G+E ISRG S V F E+D SN+L NL
Sbjct: 61 FGLECISRGASNVKFFEIDSK-TSNILFRNL 90
>gi|125973792|ref|YP_001037702.1| putative methyltransferase [Clostridium thermocellum ATCC 27405]
gi|125714017|gb|ABN52509.1| methyltransferase [Clostridium thermocellum ATCC 27405]
Length = 210
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 12/135 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGT 166
+L+V+ G A+ KL + KG+ RP + VKGA F+IL A+ PG LD+Y+GT
Sbjct: 25 ILRVISGTAKGHKLKTIKGLATRPTSDKVKGAVFNIL-------AAFVPGTNVLDIYAGT 77
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
GS+GIEA+SRG FV+ + NL T + S TV +F
Sbjct: 78 GSLGIEALSRGADSAVFVDKSRECFFTIK-ENLVHT---KLESKATVIAGDVFVTLNKFS 133
Query: 227 GKDGPFDYMSVTPPY 241
+ FD + + PPY
Sbjct: 134 KNNKKFDIIFLDPPY 148
>gi|395771779|ref|ZP_10452294.1| RNA methylase [Streptomyces acidiscabies 84-104]
Length = 199
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 15/165 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G+A ++L P G RP + + A +S G +SL R LDLY+G+G
Sbjct: 1 MTRVIAGEAGGRRLAVPPGTGTRPTSDRAREALMSTWESLLG--SSLTGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG + VE DP V + +V S+ E +AEQ +
Sbjct: 59 AVGLEALSRGAAHTLLVEADPKAVRTIR---------ENVKSLALPGAEVRQGKAEQIIQ 109
Query: 228 K--DGPFDYMSVTPPYTAVDYEVVE--YPLRTDMLDTCGCLVKIK 268
P+D + PPY D+++ E LRT+ T +V ++
Sbjct: 110 APPTTPYDIAFLDPPYAVTDHDLGEILLTLRTEGWLTPDAIVTVE 154
>gi|329942454|ref|ZP_08291264.1| hypothetical protein G5Q_0146 [Chlamydophila psittaci Cal10]
gi|332287094|ref|YP_004421995.1| RNA methyltransferase [Chlamydophila psittaci 6BC]
gi|384450235|ref|YP_005662835.1| Methylase [Chlamydophila psittaci 6BC]
gi|384451241|ref|YP_005663839.1| RNA methyltransferase [Chlamydophila psittaci 01DC11]
gi|384452217|ref|YP_005664814.1| RNA methyltransferase [Chlamydophila psittaci 08DC60]
gi|384453191|ref|YP_005665787.1| RNA methyltransferase [Chlamydophila psittaci C19/98]
gi|384454169|ref|YP_005666764.1| RNA methyltransferase [Chlamydophila psittaci 02DC15]
gi|392376347|ref|YP_004064125.1| conserved hypothetical protein [Chlamydophila psittaci RD1]
gi|406593064|ref|YP_006740243.1| hypothetical protein B712_0152 [Chlamydia psittaci NJ1]
gi|407453622|ref|YP_006732730.1| hypothetical protein B595_0155 [Chlamydia psittaci 84/55]
gi|407454957|ref|YP_006733848.1| hypothetical protein B598_0154 [Chlamydia psittaci GR9]
gi|407456323|ref|YP_006734896.1| hypothetical protein B600_0161 [Chlamydia psittaci VS225]
gi|407457689|ref|YP_006735994.1| hypothetical protein B601_0151 [Chlamydia psittaci WS/RT/E30]
gi|407460307|ref|YP_006738082.1| hypothetical protein B603_0153 [Chlamydia psittaci WC]
gi|449070780|ref|YP_007437860.1| hypothetical protein AO9_00705 [Chlamydophila psittaci Mat116]
gi|313847690|emb|CBY16678.1| conserved hypothetical protein [Chlamydophila psittaci RD1]
gi|325507367|gb|ADZ19005.1| RNA methyltransferase [Chlamydophila psittaci 6BC]
gi|328815364|gb|EGF85352.1| hypothetical protein G5Q_0146 [Chlamydophila psittaci Cal10]
gi|328914329|gb|AEB55162.1| Methylase [Chlamydophila psittaci 6BC]
gi|334691972|gb|AEG85191.1| RNA methyltransferase [Chlamydophila psittaci C19/98]
gi|334692951|gb|AEG86169.1| RNA methyltransferase [Chlamydophila psittaci 01DC11]
gi|334693926|gb|AEG87143.1| RNA methyltransferase [Chlamydophila psittaci 02DC15]
gi|334694906|gb|AEG88122.1| RNA methyltransferase [Chlamydophila psittaci 08DC60]
gi|405780381|gb|AFS19131.1| hypothetical protein B595_0155 [Chlamydia psittaci 84/55]
gi|405781500|gb|AFS20249.1| hypothetical protein B598_0154 [Chlamydia psittaci GR9]
gi|405783584|gb|AFS22331.1| hypothetical protein B600_0161 [Chlamydia psittaci VS225]
gi|405785227|gb|AFS23973.1| hypothetical protein B601_0151 [Chlamydia psittaci WS/RT/E30]
gi|405787290|gb|AFS26034.1| hypothetical protein B603_0153 [Chlamydia psittaci WC]
gi|405788936|gb|AFS27678.1| hypothetical protein B712_0152 [Chlamydia psittaci NJ1]
gi|449039288|gb|AGE74712.1| hypothetical protein AO9_00705 [Chlamydophila psittaci Mat116]
Length = 187
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 68/143 (47%), Gaps = 22/143 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + VRP VVK A F+I C A + +LDL++G GS
Sbjct: 1 MKILAGKYKGKSLKTFSNPSVRPTCGVVKEAVFNI------CSAYVEDAIFLDLFAGVGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVV------SNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
VG EA+SRG S V FV+ V S +L PNL T I + ++R
Sbjct: 55 VGFEALSRGASSVTFVDSSAQSVRLIRANSQLLNPNLPIT-------IIKQEARSAIQRL 107
Query: 223 EQFVGKDGPFDYMSVTPPYTAVD 245
+ K FD + + PPY D
Sbjct: 108 AK---KHMSFDLIYIDPPYNLED 127
>gi|219130778|ref|XP_002185534.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403065|gb|EEC43021.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 216
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 30/199 (15%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGC-PASLRPGRWLDLYSGT 166
+L++ G A+ ++L SP + +RPMM V+ A + + G PA+ R LD+++G+
Sbjct: 1 MLRIAAGTAKGRRLDSPN-VYLRPMMGKVREAVYSTFTAFGLYDPATTT--RHLDIFAGS 57
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR-VETFLERAEQF 225
GSVG+E++SRG + FV++ S V N++W F I ++ E
Sbjct: 58 GSVGLESLSRGAAHCTFVDLSEDCCSAVE-RNVKWCDFAGKEQIVCGEAIQVLNEPFAAG 116
Query: 226 VGKDGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTC------ 261
+ + + +++ PPY + Y ++EYP+ L
Sbjct: 117 IPELQTYQLVTLCPPYEEIVYGDLIEAVANSPVVTDDTVVLIEYPVELGCLPHVVRRRDG 176
Query: 262 GCLVKIKDRRFGRTHLAIY 280
G +V +++RR+GRT +AIY
Sbjct: 177 GAMVGVRNRRYGRTVIAIY 195
>gi|328948230|ref|YP_004365567.1| methyltransferase [Treponema succinifaciens DSM 2489]
gi|328448554|gb|AEB14270.1| methyltransferase [Treponema succinifaciens DSM 2489]
Length = 189
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 33/192 (17%)
Query: 109 LQVLGGKARRKKLLSPKG-MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++ GGK + + +P G M +RP M+ ++ + F+I+ SL +LDL+SG+G
Sbjct: 1 MRITGGKLKGRVTETPYGKMAIRPAMDKMRESVFNIIG------FSLEGKSFLDLFSGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS-SIHTVRVETFLERAEQFV 226
++ +EA+S G S V EMD +L N++ + V + + VE FL+R ++
Sbjct: 55 TIALEAVSHGASAVTLCEMDKSKAKTIL-KNVKMAEEVGVRINCRFMSVELFLKRCKE-- 111
Query: 227 GKDGPFDYMSVTPPY----------TAVDYE--------VVEYPLRTDMLDTCGCLVKIK 268
FDY+ + PP+ TA E ++ YP + D G LV
Sbjct: 112 ----KFDYIFLDPPFPYKFRKELVETAGTRELLTKNGQLLIHYPAEDPLPDKIGNLVLSD 167
Query: 269 DRRFGRTHLAIY 280
R +GR+ + Y
Sbjct: 168 KRIYGRSIVNFY 179
>gi|295102282|emb|CBK99827.1| RNA methyltransferase, RsmD family [Faecalibacterium prausnitzii
L2-6]
Length = 190
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 72/134 (53%), Gaps = 14/134 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++V+ G+AR ++L + G D+ RP ++ VK A F I+Q L R LDLY+G+G
Sbjct: 1 MRVIAGEARGRRLEALPGTDITRPTLDQVKEAMFSIVQF------DLPGARVLDLYAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+GIEA+SRG + F++ + V N+++ N + G D S ++ FL +
Sbjct: 55 QLGIEALSRGAARCVFLDENREAV-NIVMKNCKNCGVFDRSRVNIGEAARFLSACRE--- 110
Query: 228 KDGPFDYMSVTPPY 241
FD + + PP+
Sbjct: 111 ---QFDLVLLDPPF 121
>gi|254293359|ref|YP_003059382.1| methyltransferase [Hirschia baltica ATCC 49814]
gi|254041890|gb|ACT58685.1| methyltransferase [Hirschia baltica ATCC 49814]
Length = 205
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 79/150 (52%), Gaps = 9/150 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + + +++P+G D RP + + A F+IL A P + R +DLY+G+G+
Sbjct: 1 MRIVSGKLKGRSIITPEGRDTRPTSDRAREAMFNILAHAAWAP-PIEDARVIDLYAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EA+SRG S FVE V+ N+E + IH + ++ ++ G
Sbjct: 60 LGFEALSRGASYCLFVETH-VKARGVIRENIEKFQQFGTTRIHR---RSAVDLGKRPAGA 115
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYPLRTDML 258
FD + PPY YE+V+ P T+++
Sbjct: 116 GEKFDIAFMDPPYG---YELVD-PAITELV 141
>gi|197106627|ref|YP_002132004.1| N6-adenine-specific methylase [Phenylobacterium zucineum HLK1]
gi|196480047|gb|ACG79575.1| N6-adenine-specific methylase [Phenylobacterium zucineum HLK1]
Length = 187
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R K L++P G RP + + A F+IL+ A P +R R +DL++G+G+
Sbjct: 1 MRIVSGEFRGKALVTPPGQGTRPTSDRARQAIFNILEHAPWSP-GVRDLRVIDLFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EA+SRG + FVE D + N++ G + +H R G
Sbjct: 60 LGFEALSRGAAFCLFVETDE-AARGAIRENVDGMGLFGRTRVHRRDATQLGVRP----GA 114
Query: 229 DGP-FDYMSVTPPYTAVDYEVV 249
DGP FD + PPY EVV
Sbjct: 115 DGPAFDLAFLDPPYGKGLAEVV 136
>gi|320160572|ref|YP_004173796.1| hypothetical protein ANT_11620 [Anaerolinea thermophila UNI-1]
gi|319994425|dbj|BAJ63196.1| hypothetical protein ANT_11620 [Anaerolinea thermophila UNI-1]
Length = 193
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 12/131 (9%)
Query: 110 QVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169
+++ GKAR +L S G RP+ ++VK A F+IL GG + +LD++ GTGSV
Sbjct: 5 RIISGKARGTRLKSVPGDITRPITDMVKEALFNIL---GG---DIYGATFLDMFGGTGSV 58
Query: 170 GIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229
GIEA+SRG + F+++ V + NLE T + + + T L R D
Sbjct: 59 GIEALSRGANFCRFIDLHRVAVQTIRT-NLELTRLQERAQVLQGDAFTLLSRP-----AD 112
Query: 230 GPFDYMSVTPP 240
FDY+ + PP
Sbjct: 113 RQFDYIFIAPP 123
>gi|424880212|ref|ZP_18303844.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392516575|gb|EIW41307.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 186
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 72/137 (52%), Gaps = 16/137 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK ++RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNEIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT-VRVETFLERAEQFVG 227
VG+EA+SRGC FVE ++V L W +D +H R+ L R +G
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHGRTRI---LRRDATDLG 108
Query: 228 KDG---PFDYMSVTPPY 241
G PFD + PPY
Sbjct: 109 SAGNLDPFDVLFADPPY 125
>gi|219685880|ref|ZP_03540686.1| putative methyltransferase [Borrelia garinii Far04]
gi|219672579|gb|EED29612.1| putative methyltransferase [Borrelia garinii Far04]
Length = 189
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 17/136 (12%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ V GK + +K+L PK VRP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 11 FMYVSSGKYKGRKILFPKTGAVRPVMSLVREAFFSIIFK------DIINSKFLDVFAGTG 64
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ +EA+SRG S H VE + L+ N + V + + F ++AE F+G
Sbjct: 65 IMSVEALSRGASLAHLVECNKK-TKITLVKNFSF-----VEEFY----KFFFQKAEDFLG 114
Query: 228 -KDGPFDYMSVTPPYT 242
KD +D++ + PP+
Sbjct: 115 KKDLFYDFIYLDPPFN 130
>gi|219684628|ref|ZP_03539571.1| putative methyltransferase [Borrelia garinii PBr]
gi|219671990|gb|EED29044.1| putative methyltransferase [Borrelia garinii PBr]
Length = 189
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 17/136 (12%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ V GK + +K+L PK VRP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 11 FMYVSSGKYKGRKILFPKTGAVRPVMSLVREAFFSIIFK------DIINSKFLDVFAGTG 64
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ +EA+SRG S H VE + L+ N + V + + F ++AE F+G
Sbjct: 65 IMSVEALSRGASLAHLVECNKK-TKITLVKNFSF-----VEEFY----KFFFQKAEDFLG 114
Query: 228 -KDGPFDYMSVTPPYT 242
KD +D++ + PP+
Sbjct: 115 KKDLFYDFIYLDPPFN 130
>gi|57235055|ref|YP_180937.1| methyltransferase [Dehalococcoides ethenogenes 195]
gi|57225503|gb|AAW40560.1| methyltransferase, putative [Dehalococcoides ethenogenes 195]
Length = 192
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 36/196 (18%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW---LDLYSG 165
++++ G A+ K ++ P+ RP E+V+GA +L++ W LD+YSG
Sbjct: 1 MRIIAGDAKGKNIIVPQRKATRPATELVRGAMMSMLEAIAE--------DWSEVLDIYSG 52
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+GS+G+EA+SRG V FVE + +++ NLE G + ++ + V +A
Sbjct: 53 SGSLGLEALSRGAGHVDFVEHE-RACCDIIKQNLETIGCAGQAHVYCLDV----PKAMSL 107
Query: 226 VGKDGPFDYMSVTPPYTAVDY-EVVE-----------------YPLRTDMLDTCGCLVKI 267
+GK +D + PPY EV+E + + + G L +
Sbjct: 108 LGKQ--YDVILADPPYRNQQIGEVLEKLGNSSLIGENTVMAVTHSAHLTLAERYGRLTML 165
Query: 268 KDRRFGRTHLAIYGPD 283
K+ R G + +AIY D
Sbjct: 166 KEHRHGDSLIAIYRKD 181
>gi|310779235|ref|YP_003967568.1| methyltransferase [Ilyobacter polytropus DSM 2926]
gi|309748558|gb|ADO83220.1| methyltransferase [Ilyobacter polytropus DSM 2926]
Length = 182
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 13/159 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ K + KG + RP ++ VK A F +Q + LDL+SGTG+
Sbjct: 1 MRIIAGTAKNKSIKCRKGTETRPTLDRVKEALFSKIQ------PYVEDCSILDLFSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EAISRG +E D + V+I N+ GF + + V RA + +G+
Sbjct: 55 IALEAISRGAKRAIMIEKDQEALK-VIIENVNSLGFENKCRAYKNEV----SRAIEILGR 109
Query: 229 DGP-FDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGCLV 265
G FD + + PPY V EV++ + +L G ++
Sbjct: 110 KGEKFDIIFMDPPYRENVCTEVIKKIEKNGILSDGGLII 148
>gi|257413345|ref|ZP_04742727.2| RNA methyltransferase, RsmD family [Roseburia intestinalis L1-82]
gi|257203918|gb|EEV02203.1| RNA methyltransferase, RsmD family [Roseburia intestinalis L1-82]
Length = 188
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 82/159 (51%), Gaps = 14/159 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAG-GCPASLRPGRWLDLYSGTG 167
++++ G AR L + +G+D RP + +K F+I+Q GC +LDL++G+G
Sbjct: 5 MRIIAGTARSLPLKTVEGLDTRPTTDRIKETLFNIIQDEIPGC-------YFLDLFAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+G+EA+SRG FVE + + V N+ +T F + ++ V + L E G
Sbjct: 58 QMGLEAVSRGAQYAVFVENNKKAAACVE-DNIRFTKFTKETKLYNSDVLSALRAME---G 113
Query: 228 KDGPFDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGCLV 265
K FD + + PPY +Y+V+ Y + +L G ++
Sbjct: 114 K-YRFDIIFMDPPYKQEFEYDVLSYLKDSSLLKENGIII 151
>gi|407458935|ref|YP_006737038.1| hypothetical protein B602_0150 [Chlamydia psittaci M56]
gi|405786226|gb|AFS24971.1| hypothetical protein B602_0150 [Chlamydia psittaci M56]
Length = 187
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 68/143 (47%), Gaps = 22/143 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + VRP VVK A F+I C A + +LDL++G GS
Sbjct: 1 MKILAGKYKGKSLKTFSNPSVRPTCGVVKEAVFNI------CSAYVEDAIFLDLFAGVGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVV------SNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
VG EA+SRG S V F++ V S +L PNL T I + ++R
Sbjct: 55 VGFEALSRGASSVTFIDSSAQSVRLIRANSQLLNPNLPIT-------IIKQEARSAIQRL 107
Query: 223 EQFVGKDGPFDYMSVTPPYTAVD 245
+ K FD + + PPY D
Sbjct: 108 AK---KHMSFDLIYIDPPYNLED 127
>gi|401408615|ref|XP_003883756.1| conserved hypothetical protein [Neospora caninum Liverpool]
gi|325118173|emb|CBZ53724.1| conserved hypothetical protein [Neospora caninum Liverpool]
Length = 741
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 8/122 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAG--GCPASLRPGRWLDLYSGT 166
L V+GG+ ++L+ P+G VRPMM VK A F +LQ G GC R R LDL+SG+
Sbjct: 302 LHVVGGRFGGRRLMMPRGGGVRPMMAKVKEALFSMLQRMGVLGCVGEQRL-RVLDLFSGS 360
Query: 167 GSVGIEAISRGCSEVHFVE--MDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
G++ +EA SRG + +D + V N+++ G D S I VE L E+
Sbjct: 361 GALSVEAFSRGAEFALLADSSLDSCEAAAV---NVQYCGVADRSYIVRASVEELLLVPER 417
Query: 225 FV 226
++
Sbjct: 418 YL 419
>gi|256004523|ref|ZP_05429502.1| methyltransferase [Clostridium thermocellum DSM 2360]
gi|281417949|ref|ZP_06248969.1| methyltransferase [Clostridium thermocellum JW20]
gi|385778335|ref|YP_005687500.1| methyltransferase [Clostridium thermocellum DSM 1313]
gi|419722229|ref|ZP_14249377.1| methyltransferase [Clostridium thermocellum AD2]
gi|419724327|ref|ZP_14251395.1| methyltransferase [Clostridium thermocellum YS]
gi|255991528|gb|EEU01631.1| methyltransferase [Clostridium thermocellum DSM 2360]
gi|281409351|gb|EFB39609.1| methyltransferase [Clostridium thermocellum JW20]
gi|316940015|gb|ADU74049.1| methyltransferase [Clostridium thermocellum DSM 1313]
gi|380772333|gb|EIC06185.1| methyltransferase [Clostridium thermocellum YS]
gi|380781800|gb|EIC11450.1| methyltransferase [Clostridium thermocellum AD2]
Length = 191
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 12/135 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGT 166
+L+V+ G A+ KL + KG+ RP + VKGA F+IL A+ PG LD+Y+GT
Sbjct: 6 ILRVISGTAKGHKLKTIKGLATRPTSDKVKGAVFNIL-------AAFVPGTNVLDIYAGT 58
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
GS+GIEA+SRG FV+ + NL T + S TV +F
Sbjct: 59 GSLGIEALSRGADSAVFVDKSRECFFTIK-ENLVHT---KLESKATVIAGDVFVTLNKFS 114
Query: 227 GKDGPFDYMSVTPPY 241
+ FD + + PPY
Sbjct: 115 KNNKKFDIIFLDPPY 129
>gi|257054996|ref|YP_003132828.1| putative methyltransferase [Saccharomonospora viridis DSM 43017]
gi|256584868|gb|ACU96001.1| putative methyltransferase [Saccharomonospora viridis DSM 43017]
Length = 189
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 80/144 (55%), Gaps = 18/144 (12%)
Query: 108 LLQVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ GKA +KL + P+G RP E+V+ A F L++AG L R LDLYSG+
Sbjct: 1 MTRIVAGKAGGRKLRVPPRG--TRPTTELVREALFSSLEAAG----ELDGVRVLDLYSGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL-ERAEQF 225
G++G+EA+SRG E FVE D V VL N+ G V + +VET + E A +
Sbjct: 55 GALGLEALSRGAREAMFVEADRTAV-EVLRGNIARVGLGGV--VRQGKVETVVAEPAPE- 110
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVV 249
PF+ + PPY AVD E +
Sbjct: 111 -----PFELVLADPPY-AVDAETL 128
>gi|218507749|ref|ZP_03505627.1| putative methylase protein [Rhizobium etli Brasil 5]
Length = 180
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK D+RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNDIRPTADRTRESLFNILSHA--YPGCVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHG-RTRILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPY 241
G FD + PPY
Sbjct: 111 GNLEAFDVLFADPPY 125
>gi|291320108|ref|YP_003515366.1| DNA methylase [Mycoplasma agalactiae]
gi|290752437|emb|CBH40408.1| DNA methylase [Mycoplasma agalactiae]
Length = 182
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 35/190 (18%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++V+ GK R + L PK D+RP M+ V+ A F L+ L LDL++G+G
Sbjct: 1 MIRVISGKYRHRLLNWPKSKDIRPTMDKVREAIFSSLR------MQLEGKIVLDLFAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV- 226
S+ IEA+S + VE D V + + +V+++ +E F A F+
Sbjct: 55 SMAIEAVSNYAMKAVAVEKDKEAVKII---------YENVNALQINNIEVFNTNALAFLK 105
Query: 227 GKDG-PFDYMSVTPPYTAVDY--EVVEYPLRTDMLDTCGCLV-------KI--------- 267
K G FDY+ + PPY D E ++ + D L G +V KI
Sbjct: 106 SKTGRVFDYIFLDPPYAEYDLLNECIKLVKQNDFLSKNGLIVVETNDGEKITLPEGLMVQ 165
Query: 268 KDRRFGRTHL 277
K++++G+ H+
Sbjct: 166 KNKKYGKVHI 175
>gi|114800273|ref|YP_761457.1| putative methyltransferase [Hyphomonas neptunium ATCC 15444]
gi|114740447|gb|ABI78572.1| putative methyltransferase [Hyphomonas neptunium ATCC 15444]
Length = 186
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 5/133 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ + + L +PKGM RP + + + F+IL A P L R +DL++G+G+
Sbjct: 1 MRIIAGQHKGRSLTAPKGMTTRPTSDRTRESLFNILAHAPWAP-PLEGARVIDLFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + FVE D + N+E G + +H R T L E+ G
Sbjct: 60 LGLEAMSRGAAFCLFVETDHG-ARGAIRDNIEALGLFGHTRLHR-RSATDL--GEKPAGV 115
Query: 229 DGPFDYMSVTPPY 241
PF + PPY
Sbjct: 116 GAPFTLAFLDPPY 128
>gi|21223923|ref|NP_629702.1| DNA methylase [Streptomyces coelicolor A3(2)]
gi|4007726|emb|CAA22410.1| putative DNA methylase [Streptomyces coelicolor A3(2)]
Length = 195
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 76/166 (45%), Gaps = 16/166 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ GKA ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGKAGGRRLAVPPGTGTRPTSDRAREGLFSTWQSLLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV- 226
+VG+EA+SRG V VE D V +V S+ E RAEQ +
Sbjct: 59 AVGLEALSRGAGHVLLVEADARAARTVRA---------NVDSLGLPGAEVRAGRAEQIIR 109
Query: 227 --GKDGPFDYMSVTPPYTAVDYEVVE--YPLRTDMLDTCGCLVKIK 268
P+D + + PPY D ++ E LRT+ LV ++
Sbjct: 110 TPAPAEPYDVVFLDPPYAVSDDDLREILLTLRTEGWLGTEALVTVE 155
>gi|332296365|ref|YP_004438288.1| hypothetical protein Thena_1545 [Thermodesulfobium narugense DSM
14796]
gi|332179468|gb|AEE15157.1| Protein of unknown function methylase putative [Thermodesulfobium
narugense DSM 14796]
Length = 187
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 12/132 (9%)
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
++GG+ + + L+SPK +VRP+ V+ + DI+ S + LDL++G GSV
Sbjct: 5 IVGGEFKNRSLVSPKTNEVRPLSSRVRKSLMDIVGS------RVIECTLLDLFAGIGSVS 58
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
IE +SRG V VE +P + S L NLE L+ +I VE FL D
Sbjct: 59 IEFLSRGAKSVISVEKNPKIAS-FLKKNLENFNLLNRCTILNYSVEKFLLNCH-----DI 112
Query: 231 PFDYMSVTPPYT 242
FD + + PP++
Sbjct: 113 KFDIIYMDPPFS 124
>gi|162456342|ref|YP_001618709.1| methylase [Sorangium cellulosum So ce56]
gi|161166924|emb|CAN98229.1| putative methylase [Sorangium cellulosum So ce56]
Length = 181
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 12/133 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ ++L +P+G RP + V+ A F L G DLY+GTG+
Sbjct: 1 MRVIAGRLGGRRLAAPRGEGTRPTADRVREALFSSLGDVTGALVC-------DLYAGTGA 53
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FVE +S VL NL G + + + V +ERA + +
Sbjct: 54 LGIEALSRGARRAVFVESGRPALS-VLRENLAALGLDEAARV----VPLPVERALELLRG 108
Query: 229 DGPFDYMSVTPPY 241
+GPFD + PPY
Sbjct: 109 EGPFDLALLDPPY 121
>gi|322419232|ref|YP_004198455.1| methyltransferase [Geobacter sp. M18]
gi|320125619|gb|ADW13179.1| methyltransferase [Geobacter sp. M18]
Length = 193
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 90/187 (48%), Gaps = 21/187 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR ++LL+PK VRP + VK A F IL S G + + R LD+++GTG+
Sbjct: 1 MRVIAGSARGRQLLAPKSHRVRPTADRVKEALFSILVSRLGDFSGM---RVLDIFAGTGN 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLI-PNLEWTGFLDVSSI---HTVRVETFLERAE- 223
+GIEA+SRG F+ D S LI NLE T D + + +L R E
Sbjct: 58 LGIEALSRGAEFALFI--DSHRESAELIRRNLEGTKLADQARVVVQEAAAALKWLSRGEP 115
Query: 224 --QFVGKDGPF---------DYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKDRRF 272
V D P+ + +S +P A V E+ + D+ G L + + R +
Sbjct: 116 PFHLVFLDPPYGEGHTQRLLEILSTSPVIDAGTTVVAEFSAKEDVPTRFGRLAESERRVY 175
Query: 273 GRTHLAI 279
G T L+
Sbjct: 176 GDTALSF 182
>gi|159036817|ref|YP_001536070.1| putative methyltransferase [Salinispora arenicola CNS-205]
gi|157915652|gb|ABV97079.1| putative methyltransferase [Salinispora arenicola CNS-205]
Length = 187
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 11/142 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G +++ +P G RP + V+ A F LQ+A L R+ DLY+G+G
Sbjct: 1 MTRIVAGTLGGRRIAAPPGTGTRPTSDRVREALFSALQTA----VDLDGARFADLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG + V VE +P + V+ N+ + + T +V T L G
Sbjct: 57 AVGLEALSRGATHVLLVESNP-RAARVIRANMTALRAGPAAQLVTGKVATVLA-----AG 110
Query: 228 KDG-PFDYMSVTPPYTAVDYEV 248
+G P+D + PPY D EV
Sbjct: 111 PEGDPYDAVFADPPYAVSDEEV 132
>gi|289768870|ref|ZP_06528248.1| RsmD family RNA methyltransferase [Streptomyces lividans TK24]
gi|289699069|gb|EFD66498.1| RsmD family RNA methyltransferase [Streptomyces lividans TK24]
Length = 195
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 76/166 (45%), Gaps = 16/166 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ GKA ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGKAGGRRLAVPPGTGTRPTSDRAREGLFSTWQSLLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV- 226
+VG+EA+SRG V VE D V +V S+ E RAEQ +
Sbjct: 59 AVGLEALSRGAGHVLLVEADARAARTVRA---------NVDSLGLPGAEVRAGRAEQIIR 109
Query: 227 --GKDGPFDYMSVTPPYTAVDYEVVE--YPLRTDMLDTCGCLVKIK 268
P+D + + PPY D ++ E LRT+ LV ++
Sbjct: 110 TPAPAEPYDVVFLDPPYAVSDDDLREILLTLRTEGWLGTEALVTVE 155
>gi|111225167|ref|YP_715961.1| RNA methylase [Frankia alni ACN14a]
gi|111152699|emb|CAJ64442.1| putative RNA methylase; putative putative SAM-dependent
methyltransferase domain [Frankia alni ACN14a]
Length = 190
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 11/147 (7%)
Query: 104 TTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLY 163
T + +++GG A ++LL P G RP + + F+ L + P + R DLY
Sbjct: 2 TGASMTRIIGGTAGGRQLLVPAGRATRPTSDRAREGLFNTLSTCVDLPGA----RVADLY 57
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+G+G+VG+EA+SRG + V+ DP V L N+ G I + + R
Sbjct: 58 AGSGAVGLEALSRGAAHALLVDHDPAAV-RALRRNVTALGLSGAEII-----QASVARVV 111
Query: 224 QFVGKDGPFDYMSVTPPYTAVDYEVVE 250
Q D P+D M + PPY D E+ E
Sbjct: 112 QNTSGD-PYDVMFLDPPYAMSDVELGE 137
>gi|148380448|ref|YP_001254989.1| methyltransferase [Clostridium botulinum A str. ATCC 3502]
gi|153934015|ref|YP_001384671.1| methyltransferase [Clostridium botulinum A str. ATCC 19397]
gi|153937379|ref|YP_001388192.1| methyltransferase [Clostridium botulinum A str. Hall]
gi|148289932|emb|CAL84045.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
3502]
gi|152930059|gb|ABS35559.1| RNA methyltransferase, RsmD family [Clostridium botulinum A str.
ATCC 19397]
gi|152933293|gb|ABS38792.1| RNA methyltransferase, RsmD family [Clostridium botulinum A str.
Hall]
Length = 185
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 10/134 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+LSP+ RP ++ +K + F+I+Q+ + LD+++GTGS
Sbjct: 1 MRIISGSARGRKILSPQSSVTRPTLDRIKESIFNIIQN------QIYGSMVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG + V+ P +L N++ F D+ + + L E+F K
Sbjct: 55 LGLEAASRGAKFSYLVDKSPETYP-LLRENIKNLKFEDLCKSFNMDAYSAL---EEFASK 110
Query: 229 DGPFDYMSVTPPYT 242
FD + + PPY
Sbjct: 111 SIVFDLIFIDPPYA 124
>gi|251780095|ref|ZP_04823015.1| RNA methyltransferase, RsmD family [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243084410|gb|EES50300.1| RNA methyltransferase, RsmD family [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 185
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 42/198 (21%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR +KL+ P M+ RP ++ VK A F ++Q G P S +D+++GTGS
Sbjct: 1 MRIISGKARGRKLIPPASMETRPTLDRVKEAMFSMIQ--GYIPDS----NVIDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFV----EMDPWVVSNVLIPNLEWTGF---LDVSSIHTVRVETFLER 221
+G+EA SRG EV+ + E P + N I L++ F L++ S +R
Sbjct: 55 LGLEAASRGAKEVYLIDKSSETFPLLKEN--IKKLKFDDFCFGLNMDSYEALR------- 105
Query: 222 AEQFVGKDGPFDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLV-KI------------ 267
+ + F+ + + PPY + E ++ ++L G ++ KI
Sbjct: 106 --KLSNQGKVFELIFIDPPYCKEMIPEAIKIIKENNILSENGIIITKIDTIEEIYDGYED 163
Query: 268 ----KDRRFGRTHLAIYG 281
K R++G T + YG
Sbjct: 164 IFLRKSRKYGNTTVCFYG 181
>gi|256752289|ref|ZP_05493152.1| methyltransferase [Thermoanaerobacter ethanolicus CCSD1]
gi|300914458|ref|ZP_07131774.1| methyltransferase [Thermoanaerobacter sp. X561]
gi|307724306|ref|YP_003904057.1| methyltransferase [Thermoanaerobacter sp. X513]
gi|320116128|ref|YP_004186287.1| methyltransferase [Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|256748857|gb|EEU61898.1| methyltransferase [Thermoanaerobacter ethanolicus CCSD1]
gi|300889393|gb|EFK84539.1| methyltransferase [Thermoanaerobacter sp. X561]
gi|307581367|gb|ADN54766.1| methyltransferase [Thermoanaerobacter sp. X513]
gi|319929219|gb|ADV79904.1| methyltransferase [Thermoanaerobacter brockii subsp. finnii Ako-1]
Length = 184
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 32/192 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + +K+ S +G +VRP + VK + F+IL + + +LDL++GTG+
Sbjct: 1 MRVIAGKLKGRKVKSLEGNEVRPTADRVKESLFNILMN------KIEGSIFLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
+GIEA+SRG +FV+ + + + L F + ++V L++
Sbjct: 55 IGIEALSRGAQFCYFVDKSLKSIKCIRENVTELNLVPFAKILHRDVLKVIEMLDK----- 109
Query: 227 GKDGPFDYMSVTPPY--TAVDYEVV----------------EYPLRTDMLDTCGCLVKIK 268
+ FD + + PPY VD ++ E+ + + G LVKI+
Sbjct: 110 -NNTKFDIIFLDPPYYQNLVDKTLIKLGEAKVLKEDGIVIAEHHKNDKVREMYGNLVKIR 168
Query: 269 DRRFGRTHLAIY 280
+ ++G T L+ Y
Sbjct: 169 ENKYGETILSFY 180
>gi|340756654|ref|ZP_08693259.1| RsmD family RNA methyltransferase [Fusobacterium varium ATCC 27725]
gi|251833917|gb|EES62480.1| RsmD family RNA methyltransferase [Fusobacterium varium ATCC 27725]
Length = 182
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 92/191 (48%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ K++ S KG D RP + +K + F I+ A P S+ +LDL+SG+GS
Sbjct: 1 MKIIAGDAKNKRIKSRKGTDTRPTLGSMKESLFSII--APYVPDSV----FLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG +E D + + I N+ G+ D + V RA + +G+
Sbjct: 55 ISLEALSRGAKRAVMIEKDTEALKYI-IENVNSLGYEDRCRAYKNDV----LRAVEILGR 109
Query: 229 DGP-FDYMSVTPPY---------TAVDYE---------VVEYPLRTDMLDTCGCLVKIKD 269
G FD + + PPY A++ + E+ + ++ D G K +
Sbjct: 110 KGEKFDIIFMDPPYKEEVCTKVIKAIEKNKILAEGGLIISEHHVFEELEDEIGEFKKADE 169
Query: 270 RRFGRTHLAIY 280
R++G+ + Y
Sbjct: 170 RKYGKKCITFY 180
>gi|357053068|ref|ZP_09114171.1| RsmD family RNA methyltransferase [Clostridium clostridioforme
2_1_49FAA]
gi|355386047|gb|EHG33088.1| RsmD family RNA methyltransferase [Clostridium clostridioforme
2_1_49FAA]
Length = 185
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 88/169 (52%), Gaps = 15/169 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+R L + G+D RP + +K F++LQ L +LDL+SG+G+
Sbjct: 1 MRVIAGSAKRLLLKTLDGLDTRPTTDRIKETLFNMLQ------PDLPDCMFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +E +P + + NL T + + V T L+R E GK
Sbjct: 55 IGIEALSRGAGLAVMIENNPRALECIR-ENLARTKLEGRAMVMGCDVITGLKRLE---GK 110
Query: 229 DGPFDYMSVTPPYTAVDYE--VVEYPLRTDML--DTCGCLVKIKDRRFG 273
+ FD + + PPY +YE V++Y R+ M+ DT + ++ FG
Sbjct: 111 NYRFDIVFMDPPYHH-EYERLVLDYLSRSPMVTEDTLIVIEASRETDFG 158
>gi|239826501|ref|YP_002949125.1| methyltransferase [Geobacillus sp. WCH70]
gi|239806794|gb|ACS23859.1| methyltransferase [Geobacillus sp. WCH70]
Length = 189
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 88/191 (46%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + ++L + G+ RP + VK A F+++ G LDL+SG+G
Sbjct: 1 MRVISGKCKGRRLQAVPGISTRPTTDKVKEAIFNMV------GPYFSGGMGLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG V FV+ D V V N+ L+ + I+ ERA + + K
Sbjct: 55 LGIEALSRGLDRVIFVDHDAKAVQTVK-KNVATCRLLEQAEIY----RNDAERALRAIIK 109
Query: 229 DG-PFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKD 269
G F + + PPY E VVE+ T + + G LVK K
Sbjct: 110 RGLRFHLIFLDPPYKEQKLESILSFIDEHELLEKDGAVVVEHSAETHLAEQVGRLVKWKH 169
Query: 270 RRFGRTHLAIY 280
+G T ++IY
Sbjct: 170 EVYGITAVSIY 180
>gi|254780405|ref|YP_003064818.1| hypothetical protein CLIBASIA_01450 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040082|gb|ACT56878.1| hypothetical protein CLIBASIA_01450 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 189
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 8/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK +R+ L +P+ +RP K A FDIL P L R L++++GTGS
Sbjct: 4 IRIIGGKFQRRLLHTPQNRSIRPSDSRTKKALFDILTHV--YPVFLDSTRMLNIFAGTGS 61
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG EA+SRGC V FV+ + + ++ N E G V + L + +G
Sbjct: 62 VGFEALSRGCHYVLFVDNNSESIR-LIRRNSELLG---VEKNCNIFFRDVLRLGK--IGN 115
Query: 229 DGPFDYMSVTPPY 241
PF + + PPY
Sbjct: 116 ISPFQLVYLDPPY 128
>gi|336426753|ref|ZP_08606761.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336010393|gb|EGN40376.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 185
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+AR L +P+G D RP + +K F+ILQ G P S+ ++DL SG+G
Sbjct: 1 MRVIAGEARSLPLKTPEGQDTRPTTDRIKETLFNILQ--GDIPGSI----FVDLCSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEAISRG +F E + + + NL + F D + + V + L +
Sbjct: 55 IGIEAISRGAKRAYFAE-NAVKAAKCIQDNLSFAKFTDRAVLLKQDVVSALGGIHE---- 109
Query: 229 DGPFDYMSVTPPYTA 243
D + + PPY A
Sbjct: 110 -KEVDVIFMDPPYQA 123
>gi|402490144|ref|ZP_10836933.1| methylase [Rhizobium sp. CCGE 510]
gi|401810170|gb|EJT02543.1| methylase [Rhizobium sp. CCGE 510]
Length = 186
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK D+RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNDIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHG-RTRILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPY 241
G FD + PPY
Sbjct: 111 GNLEAFDVLFADPPY 125
>gi|402308991|ref|ZP_10827987.1| RNA methyltransferase, RsmD family [Eubacterium sp. AS15]
gi|400373110|gb|EJP26044.1| RNA methyltransferase, RsmD family [Eubacterium sp. AS15]
Length = 181
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 25/164 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GGK R KKL+ PK D+RP + + + F++LQ + +LDL+SG+G+
Sbjct: 1 MRVIGGKYRGKKLIPPKNDDIRPTTDKARESLFNMLQ------YYIYESSFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR---VETFLERAEQF 225
V IEAISRG V VE ++ I N D S +R V +FL+ ++
Sbjct: 55 VSIEAISRGAKLVTLVEKSR---ESIKIINANLNLISDEKSKADLRNGDVISFLQTTKE- 110
Query: 226 VGKDGPFDYMSVTPPYTAVDYE----VVEYPLRTDMLDTCGCLV 265
FD + PPY YE ++E +L+ G ++
Sbjct: 111 -----KFDIIFADPPYA---YEKTNQIIELISTRKLLEDDGIMI 146
>gi|190890545|ref|YP_001977087.1| methylase [Rhizobium etli CIAT 652]
gi|190695824|gb|ACE89909.1| putative methylase protein [Rhizobium etli CIAT 652]
Length = 186
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK D+RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNDIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHG-RTRILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPY 241
G FD + PPY
Sbjct: 111 GNLEAFDVLFADPPY 125
>gi|158320475|ref|YP_001512982.1| putative methyltransferase [Alkaliphilus oremlandii OhILAs]
gi|158140674|gb|ABW18986.1| putative methyltransferase [Alkaliphilus oremlandii OhILAs]
Length = 186
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 92/162 (56%), Gaps = 19/162 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR + L +P+G++ RP + VK + F+I+QS + +DL+SG+G+
Sbjct: 1 MRVISGKARGQALKAPEGLNTRPTTDRVKESIFNIIQS------RIYDSVVVDLFSGSGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE++SR S+ +F++ + ++++ NL T + + + + V + +E+ +GK
Sbjct: 55 LGIESLSRNASKAYFIDHNKNSIASIK-ENLIKTKLNNNAIVMHMEVSSAIEQ----LGK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVVEYPLR----TDMLDTCGCLV 265
+ + + PPY+ E VE L+ ++LD+ G ++
Sbjct: 110 ENVKAKLIFLDPPYSK---EFVEPTLKQIITVELLDSDGIII 148
>gi|314933320|ref|ZP_07840685.1| RNA methyltransferase, RsmD family [Staphylococcus caprae C87]
gi|313653470|gb|EFS17227.1| RNA methyltransferase, RsmD family [Staphylococcus caprae C87]
Length = 180
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 15/159 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLHEVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL + + ++ + L + +
Sbjct: 53 LGIEALSRGMEKVIFVDQNFKAVK-VIKANLNQLDLMTQAEVYKNNADRAL---KALAKR 108
Query: 229 DGPFDYMSVTPPYTA--VDYEVVEYPLRTDMLDTCGCLV 265
D FD + + PPY +D E +E ++L G +V
Sbjct: 109 DIQFDVIFLDPPYKKGLID-EAIERISEFNLLKENGIIV 146
>gi|239787518|emb|CAX83988.1| conserved uncharacterized protein [uncultured bacterium]
Length = 188
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 7/81 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL----QSAGGCPASLRPGRWLDLYS 164
++++GGK R K L++P+G DVRP + +G+ FDIL Q G A + R D+++
Sbjct: 1 MRIIGGKFRGKSLIAPEGRDVRPTSDRARGSLFDILLHRFQDTSGSLAGV---RVADVFA 57
Query: 165 GTGSVGIEAISRGCSEVHFVE 185
GTG++G+EA+SRG S V F++
Sbjct: 58 GTGAMGLEALSRGASHVTFLD 78
>gi|119717508|ref|YP_924473.1| putative methyltransferase [Nocardioides sp. JS614]
gi|119538169|gb|ABL82786.1| putative methyltransferase [Nocardioides sp. JS614]
Length = 198
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 10/134 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++GG+A +++ +P+G RP + V+ A F ++S G SL R LDLY+G+G
Sbjct: 1 MTRIIGGRAGGRRINTPRGAATRPTSDRVREALFSAIESWCG---SLHGLRVLDLYAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA SRG V VE D + ++ N GF + + V T L R G
Sbjct: 58 AVGLEAWSRGAEAVTLVESDR-RTAALVSDNARTLGFAG-ADVVAASVATVLAR-----G 110
Query: 228 KDGPFDYMSVTPPY 241
P+D + + PPY
Sbjct: 111 AAAPYDVVFLDPPY 124
>gi|256397124|ref|YP_003118688.1| methyltransferase [Catenulispora acidiphila DSM 44928]
gi|256363350|gb|ACU76847.1| methyltransferase [Catenulispora acidiphila DSM 44928]
Length = 202
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G AR ++L P G RP + + F L S G + L LDL++G+G
Sbjct: 1 MTRVIAGAARGRRLAVPPGDGTRPTGDRAREGLFSALASEFGGLSGLS---VLDLFAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++G+EA+SRG +V VE D V LI +++++ +RAE+ V
Sbjct: 58 ALGLEALSRGAEKVLLVEADRRVTK--LIAQ-------NIATVDLPGARVVADRAERAVA 108
Query: 228 ----KDGPFDYMSVTPPYTAVDYEVV 249
K+ PFD + + PPY D EVV
Sbjct: 109 GEVPKEAPFDLVLLDPPYAVADGEVV 134
>gi|20807931|ref|NP_623102.1| N-6 adenine-specific DNA methylase [Thermoanaerobacter
tengcongensis MB4]
gi|254479492|ref|ZP_05092816.1| putative methyltransferase [Carboxydibrachium pacificum DSM 12653]
gi|20516500|gb|AAM24706.1| N6-adenine-specific methylase [Thermoanaerobacter tengcongensis
MB4]
gi|214034577|gb|EEB75327.1| putative methyltransferase [Carboxydibrachium pacificum DSM 12653]
Length = 189
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 28/190 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+V+GG + +K+ S +G +VRP + VK A F+IL + + +LDL++GTG+
Sbjct: 6 LRVIGGTLKGRKIKSLEGEEVRPTSDRVKEALFNILMN------RIEGSVFLDLFAGTGN 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIEA+SRG +FV+ V + N+E L++ + + E F K
Sbjct: 60 VGIEALSRGAEFCYFVDKSTNSVKCIR-ENVEG---LELQPFCKIFHKDAFTALEIFHKK 115
Query: 229 DGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDR 270
FD + + PPY E + E R ++ + G L K+++
Sbjct: 116 SVKFDIIFLDPPYYQNLAEKALRRIGSLEVLKEGGIVIAEVHKRDELKERYGKLKKVREN 175
Query: 271 RFGRTHLAIY 280
++G T L Y
Sbjct: 176 KYGETILMFY 185
>gi|430747928|ref|YP_007207057.1| RsmD family RNA methyltransferase [Singulisphaera acidiphila DSM
18658]
gi|430019648|gb|AGA31362.1| RNA methyltransferase, RsmD family [Singulisphaera acidiphila DSM
18658]
Length = 226
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 15/133 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGR-WLDLYSGTG 167
++V+ G A+ + LL G RP+++ VK A FDIL+ PG LDL++G+G
Sbjct: 1 MRVVAGTAKGRTLLVVPGHGTRPILDRVKTALFDILRPR-------IPGMTMLDLFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
SVGIEA+S+G F ++ V+ + NL TG D + + V FL +Q
Sbjct: 54 SVGIEALSQGAESCTFTDLAHAAVTTIK-KNLAHTGLADQAVVRRVDALKFLNATDQ--- 109
Query: 228 KDGPFDYMSVTPP 240
+D + V PP
Sbjct: 110 ---QYDLIYVAPP 119
>gi|430747935|ref|YP_007207064.1| RsmD family RNA methyltransferase [Singulisphaera acidiphila DSM
18658]
gi|430019655|gb|AGA31369.1| RNA methyltransferase, RsmD family [Singulisphaera acidiphila DSM
18658]
Length = 226
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 15/133 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGR-WLDLYSGTG 167
++V+ G A+ + LL G RP+++ VK A FDIL+ PG LDL++G+G
Sbjct: 1 MRVVAGTAKGRTLLVVPGHGTRPILDRVKTALFDILRPR-------IPGMTMLDLFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
SVGIEA+S+G F ++ V+ + NL TG D + + V FL +Q
Sbjct: 54 SVGIEALSQGAESCTFTDLAHAAVTTIK-KNLAHTGLADQAVVRRVDALKFLNATDQ--- 109
Query: 228 KDGPFDYMSVTPP 240
+D + V PP
Sbjct: 110 ---QYDLIYVAPP 119
>gi|295687637|ref|YP_003591330.1| methyltransferase [Caulobacter segnis ATCC 21756]
gi|295429540|gb|ADG08712.1| methyltransferase [Caulobacter segnis ATCC 21756]
Length = 187
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R K +++P G RP + + A F+IL+ A P L R +D+++G+G+
Sbjct: 1 MRIVSGQYRGKAIVAPPGGSTRPTSDRARQAVFNILEHAAWAP-ELHGARVIDVFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG S FVE D + N++ V+ +H R
Sbjct: 60 LGLEALSRGASFCLFVETDD-AARGAIRENIDAMTLFGVTRVHRRDATDLGPRPAS---A 115
Query: 229 DGPFDYMSVTPPYT 242
PFD + PPY
Sbjct: 116 GAPFDIAFLDPPYA 129
>gi|86748297|ref|YP_484793.1| hypothetical protein RPB_1172 [Rhodopseudomonas palustris HaA2]
gi|86571325|gb|ABD05882.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
Length = 187
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 72/133 (54%), Gaps = 8/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + L++P D+RP + ++ + F+IL A G P + R LDL++GTG+
Sbjct: 1 MRVIGGRLRGRNLVAPSSRDIRPTADRLRESLFNILMHAYGDP--IGDARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA SRG FV+ + +L N+E G VS ++ R T L A
Sbjct: 59 LGIEAASRGAKFTLFVD-NGAEARALLRANVEALGLGGVSKVYR-RDATNLGPAHPVE-- 114
Query: 229 DGPFDYMSVTPPY 241
PF + + PPY
Sbjct: 115 --PFSLVFLDPPY 125
>gi|363895553|ref|ZP_09322548.1| RsmD family RNA methyltransferase [Eubacteriaceae bacterium ACC19a]
gi|361957305|gb|EHL10615.1| RsmD family RNA methyltransferase [Eubacteriaceae bacterium ACC19a]
Length = 184
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R KKLLSPK D+RP + VK + F+++Q+ + ++LDL+SG+G+
Sbjct: 1 MRVISGKYRGKKLLSPKDDDIRPTTDRVKESMFNMIQNY------IYGSKFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA SR + VE
Sbjct: 55 IGIEAFSRDAKHITMVE 71
>gi|73748121|ref|YP_307360.1| methyltransferase [Dehalococcoides sp. CBDB1]
gi|289432198|ref|YP_003462071.1| methyltransferase [Dehalococcoides sp. GT]
gi|452203032|ref|YP_007483165.1| putative ribosomal RNA small subunit methyltransferase
[Dehalococcoides mccartyi DCMB5]
gi|452204451|ref|YP_007484580.1| putative ribosomal RNA small subunit methyltransferase
[Dehalococcoides mccartyi BTF08]
gi|73659837|emb|CAI82444.1| putative methyltransferase [Dehalococcoides sp. CBDB1]
gi|288945918|gb|ADC73615.1| methyltransferase [Dehalococcoides sp. GT]
gi|452110091|gb|AGG05823.1| putative ribosomal RNA small subunit methyltransferase
[Dehalococcoides mccartyi DCMB5]
gi|452111507|gb|AGG07238.1| putative ribosomal RNA small subunit methyltransferase
[Dehalococcoides mccartyi BTF08]
Length = 192
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 36/196 (18%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW---LDLYSG 165
++++ G A+ K ++ P+ RP E+V+GA +L++ W LD+YSG
Sbjct: 1 MRIIAGDAKGKNIIVPQRKATRPATELVRGAMMSMLEAVAE--------DWSEVLDIYSG 52
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+GS+G+EA+SRG V FVE + +++ NLE G + ++ + V +A F
Sbjct: 53 SGSLGLEALSRGAGHVDFVEHE-RCCCDIIKQNLETIGCASQAHVYCLDV----PKAMAF 107
Query: 226 VGKDGPFDYMSVTPPYTAVDY-EVVE-----------------YPLRTDMLDTCGCLVKI 267
+ K +D + PPY EV+E + + + G L +
Sbjct: 108 LKKQ--YDVILADPPYRNQQIGEVLEKLGNSGLIGENTVMAVTHSAHLTLAECYGRLKML 165
Query: 268 KDRRFGRTHLAIYGPD 283
K+ R G + +AIY D
Sbjct: 166 KEHRHGDSLIAIYRKD 181
>gi|145593832|ref|YP_001158129.1| putative methyltransferase [Salinispora tropica CNB-440]
gi|145303169|gb|ABP53751.1| putative methyltransferase [Salinispora tropica CNB-440]
Length = 187
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 9/141 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G +++ +P G RP + V+ A F LQ+A A L R+ DLY+G+G
Sbjct: 1 MTRIVAGALGGRRITAPPGAGTRPTSDRVREALFSALQAA----ADLDGVRFADLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG + V VE +P + + N+ + + +V T L +
Sbjct: 57 AVGLEALSRGAAHVLLVESNP-RAARTIRANVAALRAGPAARLVAGKVATVLADGPE--- 112
Query: 228 KDGPFDYMSVTPPYTAVDYEV 248
+GP+D + PPY+ D EV
Sbjct: 113 -EGPYDVVFADPPYSVSDEEV 132
>gi|253681992|ref|ZP_04862789.1| RNA methyltransferase, RsmD family [Clostridium botulinum D str.
1873]
gi|253561704|gb|EES91156.1| RNA methyltransferase, RsmD family [Clostridium botulinum D str.
1873]
Length = 185
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 92/191 (48%), Gaps = 28/191 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ KK+L P+ M RP ++ VK F+I+Q+ + +D+++GTGS
Sbjct: 1 MRIIAGRAKGKKILPPEDMVTRPTLDRVKENIFNIIQN------RVVDAVVVDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+E++SRG + + ++ P V L N++ F + + + L + F K
Sbjct: 55 LGLESVSRGAKQCYLIDRYP-VTFKRLQQNVKDLRFENECTCLNMDSYAAL---KDFAKK 110
Query: 229 DGPFDYMSVTPPYT------AVDYEVVEYPLRTDMLDTCGC------------LVKIKDR 270
+ FD + V PPY A++ E L D L C +V ++DR
Sbjct: 111 NKKFDLIFVDPPYAKEMIPPAIEIIAEEKLLHEDGLIVCKIDSSEEIYKGNDDIVLVQDR 170
Query: 271 RFGRTHLAIYG 281
R+G T + Y
Sbjct: 171 RYGNTTVCFYA 181
>gi|260587793|ref|ZP_05853706.1| RNA methyltransferase, RsmD family [Blautia hansenii DSM 20583]
gi|331083795|ref|ZP_08332904.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
6_1_63FAA]
gi|260542058|gb|EEX22627.1| RNA methyltransferase, RsmD family [Blautia hansenii DSM 20583]
gi|330403220|gb|EGG82780.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
6_1_63FAA]
Length = 183
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 78/144 (54%), Gaps = 12/144 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ L + G++ RP + VK F++LQ L R+LD+++G+G
Sbjct: 1 MRVIAGSAKSMPLKTIPGLETRPTTDRVKETLFNMLQP------YLCECRFLDIFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F+E + + V+ NL++T D + + + +A F+
Sbjct: 55 IGIEALSRGAQFCVFIEKNRKAAA-VIEDNLKFTKLADRADVWCKDI----FQAVAFLEN 109
Query: 229 DGPFDYMSVTPPYTA-VDYEVVEY 251
+ PFD + + PPY ++ +V+E+
Sbjct: 110 EEPFDCIFMDPPYNQELEKQVLEF 133
>gi|220931856|ref|YP_002508764.1| putative methyltransferase [Halothermothrix orenii H 168]
gi|219993166|gb|ACL69769.1| putative methyltransferase [Halothermothrix orenii H 168]
Length = 178
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 73/133 (54%), Gaps = 13/133 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR ++L S +G RP + VK A F+IL S+ LDL++G GS
Sbjct: 1 MRIISGIARGRRLKSIRGSGTRPTTDRVKEALFNILGQ------SVIETDVLDLFAGFGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + FVE + V NV+ N++ GF +++ + V T+L G
Sbjct: 55 LGLEALSRGANSAVFVEKNYRNV-NVINDNIKLCGFEELADVVKKDVFTYLRET----GS 109
Query: 229 DGPFDYMSVTPPY 241
D FD + + PPY
Sbjct: 110 D--FDVIFMDPPY 120
>gi|429765793|ref|ZP_19298073.1| RNA methyltransferase, RsmD family [Clostridium celatum DSM 1785]
gi|429185646|gb|EKY26620.1| RNA methyltransferase, RsmD family [Clostridium celatum DSM 1785]
Length = 185
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 18/137 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+AR +KL+ P M+ RP ++ VK A F +Q+ L +D+++GTGS
Sbjct: 1 MRIIAGRARGRKLIPPATMETRPTLDRVKEAMFSTIQN------YLLDAVVIDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIP----NLEWTGFLDVSSIHTVRVETFLERAEQ 224
+G+EA SRG EV+ V+ SN P N++ F D + + ++++ E
Sbjct: 55 LGLEAASRGSKEVYLVDK-----SNTTFPLLKKNVDDLKFNDCC--YPLNMDSY-EALRS 106
Query: 225 FVGKDGPFDYMSVTPPY 241
K FD + + PPY
Sbjct: 107 LANKGKVFDVIFIDPPY 123
>gi|325263996|ref|ZP_08130729.1| RNA methyltransferase, RsmD family [Clostridium sp. D5]
gi|324031034|gb|EGB92316.1| RNA methyltransferase, RsmD family [Clostridium sp. D5]
Length = 189
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 72/133 (54%), Gaps = 11/133 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+R +L + G+D RP + +K F+++ S+ +LDL++G+G
Sbjct: 1 MRVIAGSAKRLQLKTLDGLDTRPTTDRIKETLFNMI------APSVYGSVFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E FVE +P ++ V NL++T + T V L + E
Sbjct: 55 IGIEALSRGAREAVFVENNPKAMACVK-ENLKYTKLEAKALTLTREVMAALYQLEG---- 109
Query: 229 DGPFDYMSVTPPY 241
+ FD++ + PPY
Sbjct: 110 EKVFDFIFMDPPY 122
>gi|299144504|ref|ZP_07037583.1| RNA methyltransferase, RsmD family [Peptoniphilus sp. oral taxon
386 str. F0131]
gi|298517592|gb|EFI41332.1| RNA methyltransferase, RsmD family [Peptoniphilus sp. oral taxon
386 str. F0131]
Length = 181
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 95/190 (50%), Gaps = 30/190 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R KLLSP+ + RP + +K F++L + LDL+SG+GS
Sbjct: 1 MRVISGKNRGLKLLSPRDLRTRPTEDRIKENVFNLL------GQNFFDANVLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG +FV+ D + + + N++ + + V + L+ ++ G+
Sbjct: 55 IGIEFLSRGAKFCYFVDNDKDAI-DTINKNIKKA---HCENNYKVILSGALKVMDRLCGE 110
Query: 229 DGPFDYMSVTPPY--TAVDYEVVEYPLRTDMLDTCGCLV----------------KIKDR 270
FDY+ + PPY + + + +E L ++L+ G ++ IK++
Sbjct: 111 --KFDYIYIDPPYDNSELYLKSIEGILEKNLLEKDGIIIIEEDSSKKLDFTKYLNLIKEK 168
Query: 271 RFGRTHLAIY 280
++G T ++I+
Sbjct: 169 KYGSTSVSIW 178
>gi|433463262|ref|ZP_20420821.1| putative methyltransferase [Halobacillus sp. BAB-2008]
gi|432187772|gb|ELK45029.1| putative methyltransferase [Halobacillus sp. BAB-2008]
Length = 182
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 78/162 (48%), Gaps = 19/162 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + ++L S RP + VK A F G GR LDL++G+G
Sbjct: 1 MRVIAGQFKGRQLKSVPTHKTRPTTDKVKEAVFH------GIGPFFDGGRALDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF---LERAEQF 225
+GIEAISRG FV+ V V E LD+ RVE F +RA +
Sbjct: 55 LGIEAISRGADSCVFVDQQQKAVQTV----YENIKLLDIED----RVEVFRTDAKRAIKA 106
Query: 226 VGKDG-PFDYMSVTPPYTAVDY-EVVEYPLRTDMLDTCGCLV 265
GK G F+Y+ + PPY Y +++E L+ D++ +V
Sbjct: 107 AGKRGLEFEYIFLDPPYKKFSYKDLMEALLQNDLVADDAIIV 148
>gi|156096502|ref|XP_001614285.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148803159|gb|EDL44558.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 410
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 95/213 (44%), Gaps = 35/213 (16%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++L + GK + +++ SP RPMM VK + F IL G S LD++SG+
Sbjct: 189 KILSIHEGKLKNRRIYSPDTY-TRPMMSKVKESLFSILSHLGIFSNS--HINVLDVFSGS 245
Query: 167 GSVGIEAISRGCSEVHFVEMD----PWVVSNVLIPNL--EWTGFLDVSSIHTVRVETFLE 220
G++GIE ISR V FV++ + N+ + N+ + + ++ ++
Sbjct: 246 GNLGIECISRDIPHVTFVDLSLNSCKTIYENLKLCNIPHSYNQIIRADAMELLKCPFKFH 305
Query: 221 RAEQFVGKDGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDML-DTC 261
E+ F TPPY + Y +EYP +ML
Sbjct: 306 LGEK-------FHLAFFTPPYEQIVYSELIQNISNSELFHPDCLVFIEYPKEIEMLPQRV 358
Query: 262 GCLVKIKDRRFGRTHLAIYGPDWAQKKRKSEKK 294
+V +++R+FGRT+ A+Y + + K +E++
Sbjct: 359 YNMVGLRNRKFGRTYFALYVLNSSGKYLSAERR 391
>gi|384210076|ref|YP_005595796.1| N6-adenine-specific methylase [Brachyspira intermedia PWS/A]
gi|343387726|gb|AEM23216.1| N6-adenine-specific methylase [Brachyspira intermedia PWS/A]
Length = 187
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 97/193 (50%), Gaps = 29/193 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ ++ G + +K+++PK D RP VK A F+I+ + +LDL SG+G+
Sbjct: 1 MHIISGNKKGRKIITPK-RDFRPTQGKVKEAFFNIID--------IENKTFLDLCSGSGA 51
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EA+SR F+E+D V + N + F D +I+ ++ + AE +V K
Sbjct: 52 MGFEALSRNAKFAAFIEIDREAVKTIF-SNAKAI-FSDNENIYKIKRVS----AEDYVKK 105
Query: 229 -DGPFDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWAQ 286
+ FD + + PPY + + ++V+ ++ ++L+ G L A +G D+ +
Sbjct: 106 TNDKFDVIYLDPPYHSKIYFDVINNIIKRNILNDNGVLA------------AEFGADYYK 153
Query: 287 KKRKSEKKIPIVT 299
K ++E+ I++
Sbjct: 154 KFLENEELKNIIS 166
>gi|337286565|ref|YP_004626038.1| methyltransferase [Thermodesulfatator indicus DSM 15286]
gi|335359393|gb|AEH45074.1| methyltransferase [Thermodesulfatator indicus DSM 15286]
Length = 178
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 29/188 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GK + + L SPK +RPMM+ V+ A FD L + + LDL+ GTG+
Sbjct: 1 MRITAGKYKGRVLKSPKSRTIRPMMDKVRKALFDSLG------LKVEGAKVLDLFCGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG +V FV+ +S ++ NL G + + I + + L++ K
Sbjct: 55 LGLEALSRGAEKVVFVDQSGEALS-LVKENLASLGEKN-AEIKRLTLPNGLKKL-----K 107
Query: 229 DGPFDYMSVTPPY-TAVDYEVVE---------------YPLRTDMLDTCGCLVKIKDRRF 272
FD + +TPPY T + + ++ D + G L+K +++ +
Sbjct: 108 PNTFDLIFITPPYGTGLALKTLKEIESFLSEDGVVVVEENTEEDFPNEMGNLLKFREKTY 167
Query: 273 GRTHLAIY 280
G+T L Y
Sbjct: 168 GQTRLHFY 175
>gi|110632790|ref|YP_672998.1| putative methyltransferase [Chelativorans sp. BNC1]
gi|110283774|gb|ABG61833.1| putative methyltransferase [Chelativorans sp. BNC1]
Length = 186
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG R ++L SPK +RP + + + F+I++ + P S+ R LD +SG+G+
Sbjct: 1 MRIVGGALRGRQLTSPKSDAIRPTTDRARESLFNIIEHS--YPGSIEGARVLDFFSGSGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
+GIEA+SRG FVE + ++ N+E G R F A Q V
Sbjct: 59 LGIEALSRGAGYCLFVE-EAASARALVRENIESLGLQG-------RTRIFRRDATQLGPV 110
Query: 227 GKDGPFDYMSVTPPY 241
G PF+ + PPY
Sbjct: 111 GTMQPFNLVFADPPY 125
>gi|397690459|ref|YP_006527713.1| methyltransferase [Melioribacter roseus P3M]
gi|395811951|gb|AFN74700.1| putative methyltransferase [Melioribacter roseus P3M]
Length = 182
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 11/158 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + + + PK VRP + VK + F+ L + + D+Y+G+GS
Sbjct: 1 MRIISGKFKGRTIKFPKSKLVRPTTDKVKESIFNYLNNI----IDFEDIKVCDIYAGSGS 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG HFVE D + VS L N+E G D + I+ + F + V
Sbjct: 57 LGLEALSRGAGLTHFVEKD-FFVSKTLRENIEALGVEDNTRIYRMEALRFSSQTVHEV-- 113
Query: 229 DGPFDYMSVTPPYTAVD-YEVVEYPLRTDMLDTCGCLV 265
+D + PP+ D ++VV+ + L G ++
Sbjct: 114 ---YDLILADPPFFKDDIHKVVKKIIANGFLSEAGIMI 148
>gi|414163862|ref|ZP_11420109.1| RsmD family RNA methyltransferase [Afipia felis ATCC 53690]
gi|410881642|gb|EKS29482.1| RsmD family RNA methyltransferase [Afipia felis ATCC 53690]
Length = 185
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 8/161 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + + SP D+RP + ++ + F+IL A PA R LDL++GTG+
Sbjct: 1 MRVVGGRMRGRNIASPASKDIRPTQDRLRESVFNILMHAYENPAV--DARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG S F++ + +L N+E G V+ ++ R T L A
Sbjct: 59 LGIEAVSRGASFALFID-NGAEARALLRNNVEALGLGGVTKVYR-RDATQLGPAHPME-- 114
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKD 269
PF + PPY E LR G LV +++
Sbjct: 115 --PFTLAFLDPPYGKGLAEKALASLREGKWLVPGALVVVEE 153
>gi|345009580|ref|YP_004811934.1| methyltransferase [Streptomyces violaceusniger Tu 4113]
gi|344035929|gb|AEM81654.1| methyltransferase [Streptomyces violaceusniger Tu 4113]
Length = 195
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 69/150 (46%), Gaps = 16/150 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F +S G SL R LDLY G+G
Sbjct: 1 MTRVIAGAAGGRRLAVPPGNGTRPTSDRAREGLFSTWESLLG---SLDGARVLDLYGGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG V VE DP + +V ++ E RAEQ +
Sbjct: 58 AVGLEALSRGAGHVLLVESDPRAARTI---------RQNVRALGLPGAELRTGRAEQTIT 108
Query: 228 KD----GPFDYMSVTPPYTAVDYEVVEYPL 253
GP+D + + PPY D E+ E L
Sbjct: 109 GQAPVTGPYDVVFLDPPYAVTDAELREILL 138
>gi|257438106|ref|ZP_05613861.1| RNA methyltransferase, RsmD family [Faecalibacterium prausnitzii
A2-165]
gi|257199437|gb|EEU97721.1| RNA methyltransferase, RsmD family [Faecalibacterium prausnitzii
A2-165]
Length = 189
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 14/134 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++V+ G+AR ++L + G ++ RP M+ VK A F I+Q L R LDLY+G+G
Sbjct: 1 MRVIAGEARGRRLEALPGTEITRPTMDQVKEAMFSIVQF------DLPGARVLDLYAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+GIEA+SRG + F++ + V N+++ N + G D S ++ +L +
Sbjct: 55 QLGIEALSRGAARCVFLDENREAV-NIVMKNCKNCGVFDRSRVNIGEAARYLSACHE--- 110
Query: 228 KDGPFDYMSVTPPY 241
FD + + PP+
Sbjct: 111 ---QFDIVLLDPPF 121
>gi|410658796|ref|YP_006911167.1| Ribosomal RNA small subunit methyltransferase D [Dehalobacter sp.
DCA]
gi|410661785|ref|YP_006914156.1| Ribosomal RNA small subunit methyltransferase D [Dehalobacter sp.
CF]
gi|409021151|gb|AFV03182.1| Ribosomal RNA small subunit methyltransferase D [Dehalobacter sp.
DCA]
gi|409024141|gb|AFV06171.1| Ribosomal RNA small subunit methyltransferase D [Dehalobacter sp.
CF]
Length = 187
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 12/133 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ + + L + KGMD RP + VKGA F+IL + R LDL++GTG+
Sbjct: 1 MRIISGQWKGRNLKTVKGMDTRPTSDKVKGAIFNIL------AGKVMNARVLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ EA+SRG VE D + + N E G +SI + F ++A Q
Sbjct: 55 LSFEALSRGARHAVLVEKDTSALETIR-KNAEILGAAPRTSILRMDAMNFFKQAVQ---- 109
Query: 229 DGPFDYMSVTPPY 241
FD + + PPY
Sbjct: 110 -ERFDLIFLDPPY 121
>gi|313114873|ref|ZP_07800372.1| RNA methyltransferase, RsmD family [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310622823|gb|EFQ06279.1| RNA methyltransferase, RsmD family [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 222
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 14/134 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++V+ G+AR + L + G DV RP + VK A F I+Q L R LDLY+G+G
Sbjct: 28 MRVIAGEARGRSLEALPGTDVTRPTLSQVKEAMFSIVQF------DLPGARVLDLYAGSG 81
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+GIEA+SRG + F++ + V N+++ N + G D S ++ +L +
Sbjct: 82 QLGIEALSRGAARCVFLDENREAV-NIIMRNCKACGVFDRSRVNIGEAARYLSACRE--- 137
Query: 228 KDGPFDYMSVTPPY 241
FD + + PP+
Sbjct: 138 ---QFDIVLLDPPF 148
>gi|424781003|ref|ZP_18207869.1| Ribosomal RNA small subunit methyltransferase D [Catellicoccus
marimammalium M35/04/3]
gi|422842423|gb|EKU26875.1| Ribosomal RNA small subunit methyltransferase D [Catellicoccus
marimammalium M35/04/3]
Length = 185
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ R ++L S +G RP + VK A F ++ G LDLYSG+G
Sbjct: 1 MRVIAGEYRGRRLKSLEGKQTRPTTDKVKEAVFSMI------GPYFDGGTCLDLYSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG E + ++ + V+ N+E G D + I L +QF +
Sbjct: 55 LAIEALSRGMKEAYCIDHHYQAI-KVIKENMELVGCADRAVILKQDANQAL---QQFAAQ 110
Query: 229 DGPFDYMSVTPPYTAVDYE-----VVEYPLRTDM 257
FD + + PPY + E ++E L +DM
Sbjct: 111 RQSFDLIFLDPPYAKQEIEKQLTFIMENQLLSDM 144
>gi|375086061|ref|ZP_09732579.1| RsmD family RNA methyltransferase [Megamonas funiformis YIT 11815]
gi|374566109|gb|EHR37360.1| RsmD family RNA methyltransferase [Megamonas funiformis YIT 11815]
Length = 190
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 77/153 (50%), Gaps = 15/153 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR KL +PKG + RP + +K + F+IL S + LDL+SGTGS
Sbjct: 1 MRIITGSARGAKLKAPKGQNTRPTADRIKESLFNILGSF------IYDKNVLDLFSGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG + V+ +S + N T +D S+I ++ + F ++ K
Sbjct: 55 LSLEALSRGANHAIMVDCSLDSISTIKF-NATHTKLIDKSTI--LKADVF-ATIKKLHLK 110
Query: 229 DGPFDYMSVTPPYTA-----VDYEVVEYPLRTD 256
FD + PPY V + EYPL T+
Sbjct: 111 QTKFDIIFCDPPYHQDLCLKVLQMLHEYPLLTE 143
>gi|282882122|ref|ZP_06290763.1| RNA methyltransferase, RsmD family [Peptoniphilus lacrimalis 315-B]
gi|281298152|gb|EFA90607.1| RNA methyltransferase, RsmD family [Peptoniphilus lacrimalis 315-B]
Length = 188
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 30/190 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG R KL +P G++ RP ++ ++ + F+IL G LDL++G+G
Sbjct: 1 MRIIGGDCRGIKLSAPLGLNTRPTLDRIRESLFNILGQY------FNGGTVLDLFAGSGC 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
G+E +SRG +FV+ + NV+ N+E D S + + + L E F+ +
Sbjct: 55 NGLEFLSRGVDFSYFVD-NSSQSYNVITSNIEKCRLKDKSKVLKMDYKKAL---ESFLSE 110
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYPL--RTDMLDTCGCLV----------------KIKDR 270
F Y+ + PP+ DY + L +L G L+ +IK++
Sbjct: 111 --TFSYIYMDPPFMKRDYYIDSINLIKENRLLKKDGLLIIEHKTDDTFELPEGFSEIKNK 168
Query: 271 RFGRTHLAIY 280
++G T L+I+
Sbjct: 169 KYGNTSLSIW 178
>gi|223043823|ref|ZP_03613865.1| RNA methyltransferase, RsmD family [Staphylococcus capitis SK14]
gi|417907606|ref|ZP_12551377.1| RNA methyltransferase, RsmD family [Staphylococcus capitis VCU116]
gi|222442727|gb|EEE48830.1| RNA methyltransferase, RsmD family [Staphylococcus capitis SK14]
gi|341595635|gb|EGS38278.1| RNA methyltransferase, RsmD family [Staphylococcus capitis VCU116]
Length = 180
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 15/159 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLHEVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL + + ++ + L + +
Sbjct: 53 LGIEALSRGMEKVIFVDQNFKAVK-VIKANLNQLDLMPQAEVYKNNADRAL---KALAKR 108
Query: 229 DGPFDYMSVTPPYTA--VDYEVVEYPLRTDMLDTCGCLV 265
D FD + + PPY +D E +E ++L G +V
Sbjct: 109 DIQFDVIFLDPPYKKGLID-EAIERISEFNLLKENGIIV 146
>gi|315917592|ref|ZP_07913832.1| methyltransferase [Fusobacterium gonidiaformans ATCC 25563]
gi|317059117|ref|ZP_07923602.1| methyltransferase [Fusobacterium sp. 3_1_5R]
gi|313684793|gb|EFS21628.1| methyltransferase [Fusobacterium sp. 3_1_5R]
gi|313691467|gb|EFS28302.1| methyltransferase [Fusobacterium gonidiaformans ATCC 25563]
Length = 182
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 13/159 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+AR +KL + KG + RP + VK A F ++ L +LDL+SG+G+
Sbjct: 1 MRIIAGEARSRKLKTRKGFETRPTLANVKEALFSMI------APHLEDSVFLDLFSGSGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG +E D + +I N+ GF D + + F RA + + +
Sbjct: 55 IALEALSRGAKRAVMIEKDTEAL-RFIIENVNALGFQD--RCRAYKNDVF--RAIEILAR 109
Query: 229 DGP-FDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLV 265
G F + + PPY V +V+E+ + ++L G ++
Sbjct: 110 KGEKFSIIFMDPPYQDNVCTKVLEHIEKFEILGEEGIII 148
>gi|255348862|ref|ZP_05380869.1| methyltransferase [Chlamydia trachomatis 70]
gi|255503402|ref|ZP_05381792.1| methyltransferase [Chlamydia trachomatis 70s]
Length = 190
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 21/163 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + VRP VVK A F+I C + R+LDL++G+GS
Sbjct: 1 MKILSGKFKGKSLKTFSNPSVRPTCGVVKEAVFNI------CANHIVGARFLDLFAGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS-IHTVR--VETFLERAEQF 225
+G EAISRG FV+ V ++ NL LD + +H ++ V + L R
Sbjct: 55 MGFEAISRGAESATFVDSSVEAV-RLIRANL---ALLDSNLPVHILKQDVRSALLR---- 106
Query: 226 VGKDG-PFDYMSVTPPY---TAVDYEVVEYPLRTDMLDTCGCL 264
+GK FD + + PPY A EV+ Y ++ +L+ G L
Sbjct: 107 LGKQNRSFDIVYIDPPYALENAFLQEVLSYVVQQSLLEPEGIL 149
>gi|302554402|ref|ZP_07306744.1| RsmD family RNA methyltransferase [Streptomyces viridochromogenes
DSM 40736]
gi|302472020|gb|EFL35113.1| RsmD family RNA methyltransferase [Streptomyces viridochromogenes
DSM 40736]
Length = 195
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 68/146 (46%), Gaps = 14/146 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGAAGGRRLAVPPGTGTRPTSDRAREGLFSTWQSLLGGP--LEGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG S VE DP V +V S+ E +AEQ +
Sbjct: 59 AVGLEALSRGASHTLLVEADPRATRTVRD---------NVKSLGLPGAEVRSGKAEQIIR 109
Query: 228 K---DGPFDYMSVTPPYTAVDYEVVE 250
P+D + + PPY D ++ E
Sbjct: 110 TPPPGDPYDLVFLDPPYAVTDDDLRE 135
>gi|302392173|ref|YP_003827993.1| methyltransferase [Acetohalobium arabaticum DSM 5501]
gi|302204250|gb|ADL12928.1| methyltransferase [Acetohalobium arabaticum DSM 5501]
Length = 182
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 91/190 (47%), Gaps = 30/190 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK++ L S G +VRP ++ VK A F+IL + +LDLY+G G
Sbjct: 1 MRVIAGKSKGHNLRSISGTEVRPTIDRVKEALFNIL------GPEIIDIDFLDLYAGFGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + F++ + ++ NL+ TG + + V T L R F +
Sbjct: 55 LGIEALSRGAASSTFIDNSARQIG-IIEENLKLTGLEQQAEVIQGDVLTQLGR---FTPQ 110
Query: 229 DGPFDYMSVTPPYTAVDYE-VVEYPLRTDMLDTCGC-----------------LVKIKDR 270
FD + + PPY A E +E ++ D+L G L I++R
Sbjct: 111 --SFDIIVMDPPYQAGLLEPTIEKIMQYDLLKEAGIISVEHHKQDEIAIEFDNLELIRER 168
Query: 271 RFGRTHLAIY 280
+G T L++Y
Sbjct: 169 DYGNTCLSLY 178
>gi|440533446|emb|CCP58956.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
Ia/SotonIa1]
gi|440534340|emb|CCP59850.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
Ia/SotonIa3]
Length = 191
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 21/163 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + VRP VVK A F+I C + R+LDL++G+GS
Sbjct: 1 MKILSGKFKGKSLKTFSNPSVRPTCGVVKEAVFNI------CANHIVGARFLDLFAGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS-SIHTVR--VETFLERAEQF 225
+G EAISRG FV+ V ++ NL LD + +H ++ V + L R
Sbjct: 55 MGFEAISRGAESATFVDSSVEAV-RLIRANL---ALLDSNLPVHILKQDVRSALLR---- 106
Query: 226 VGKDG-PFDYMSVTPPY---TAVDYEVVEYPLRTDMLDTCGCL 264
+GK FD + + PPY A EV+ Y ++ +L+ G L
Sbjct: 107 LGKQNRSFDIVYIDPPYALENAFLQEVLSYVVQQSLLEPDGIL 149
>gi|420239800|ref|ZP_14744086.1| RNA methyltransferase, RsmD family [Rhizobium sp. CF080]
gi|398078530|gb|EJL69428.1| RNA methyltransferase, RsmD family [Rhizobium sp. CF080]
Length = 186
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 71/136 (52%), Gaps = 14/136 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK ++RP ++ + + F+I+ P +L GR +DL++GTG+
Sbjct: 1 MRIVGGEFRGRSLATPKTNEIRPTIDRTRESLFNIIGHV--YPQALDGGRVIDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA+SRGC FVE + V L W ++ S+ L R +G
Sbjct: 59 VGLEALSRGCKSALFVE------NGVEGRGLLWE---NIDSLGLHGRARILRRDATKLGV 109
Query: 229 DG---PFDYMSVTPPY 241
PF ++ PPY
Sbjct: 110 ANNIEPFHFLFADPPY 125
>gi|258511318|ref|YP_003184752.1| methyltransferase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257478044|gb|ACV58363.1| methyltransferase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 184
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 88/184 (47%), Gaps = 20/184 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ R L SP+G VRP + VK + F+++ P L G +DL++GTG+
Sbjct: 1 MRVIAGRWRGISLESPRGSAVRPTTDRVKESMFNLI------PHQLE-GLVIDLFAGTGA 53
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE----- 223
+GIEA+SRG S FV+ DP + ++ NL+ G + + + L R E
Sbjct: 54 LGIEALSRGASRAIFVDKDP-RSARLVRRNLDRVGAASQAEVWVLDWARALRRFEASGEV 112
Query: 224 -QFVGKDGPFDYMSVTP-----PYTAVDYEVV-EYPLRTDMLDTCGCLVKIKDRRFGRTH 276
+V D P+ P P V VV E P D+ + G V K R++G
Sbjct: 113 AAYVFVDPPYQEQLWIPVLRALPAARVSGAVVCEAPASLDLPEQVGDFVLQKSRQYGDIA 172
Query: 277 LAIY 280
+ IY
Sbjct: 173 VRIY 176
>gi|312898936|ref|ZP_07758324.1| RNA methyltransferase, RsmD family [Megasphaera micronuciformis
F0359]
gi|310620098|gb|EFQ03670.1| RNA methyltransferase, RsmD family [Megasphaera micronuciformis
F0359]
Length = 191
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 83/160 (51%), Gaps = 16/160 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++++ G AR + L SP+GM RP ++ + + F+IL ++ S R LD+++GTG
Sbjct: 7 MVRIISGSARGRILKSPQGMATRPTLDRTRESLFNILATS-----SFYEKRVLDIFAGTG 61
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++G+EA+SRG SE F+++ ++++ N E + + + + L+ E
Sbjct: 62 ALGLEAMSRGASEGVFIDVR---TASLIKKNAELCKVSERCKVLPLNHKNALQHLE---- 114
Query: 228 KDGPFDYMSVTPPYTAVDY--EVVEYPLRTDMLDTCGCLV 265
FDY+ PPY D+ E + + +L G L+
Sbjct: 115 -GQTFDYIFADPPYDK-DFVNETISTVMNYGLLSDTGLLI 152
>gi|328954571|ref|YP_004371905.1| methyltransferase [Desulfobacca acetoxidans DSM 11109]
gi|328454895|gb|AEB10724.1| methyltransferase [Desulfobacca acetoxidans DSM 11109]
Length = 196
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 29/190 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ + ++L +G +RP + V+ A F+IL P L R LDL++G G+
Sbjct: 1 MRIIAGRLKGRRLARVRG-PMRPTADRVREAVFNILG-----PVIL-GARVLDLFAGAGA 53
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FVE + + +L NL G VSS+ + V L + G+
Sbjct: 54 LGIEALSRGAGDAVFVE-NHRISLQILRRNLILCGLDQVSSVLPLSVARALPK---LAGQ 109
Query: 229 DGPFDYMSVTPPY------------------TAVDYEVVEYPLRTDMLDTCGCLVKIKDR 270
FD + + PPY +VE+ + D+ +T LV + R
Sbjct: 110 GRCFDLVFLDPPYGRGMAAATLMQLATTGIVAPTGRVIVEHSRQEDLEETYRSLVYMDQR 169
Query: 271 RFGRTHLAIY 280
R+G T ++ Y
Sbjct: 170 RYGGTLISFY 179
>gi|294631618|ref|ZP_06710178.1| RsmD family RNA methyltransferase [Streptomyces sp. e14]
gi|292834951|gb|EFF93300.1| RsmD family RNA methyltransferase [Streptomyces sp. e14]
Length = 195
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 71/149 (47%), Gaps = 14/149 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ GKA ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGKAGGRRLAVPPGTGTRPTSDRAREGLFSTWQSLLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG VE D + ++ N V S+ E +AEQ V
Sbjct: 59 AVGLEALSRGAGHTLLVEADA-RAARIVREN--------VKSLGLPGAEVRTGKAEQIVQ 109
Query: 228 K---DGPFDYMSVTPPYTAVDYEVVEYPL 253
GP+D + + PPY D ++ E L
Sbjct: 110 SPPPAGPYDIVFLDPPYAVTDDDLREILL 138
>gi|326389527|ref|ZP_08211094.1| methyltransferase [Thermoanaerobacter ethanolicus JW 200]
gi|325994532|gb|EGD52957.1| methyltransferase [Thermoanaerobacter ethanolicus JW 200]
Length = 184
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 90/192 (46%), Gaps = 32/192 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + +K+ S +G +VRP + VK + F+IL + + +LDL++GTG+
Sbjct: 1 MRVIAGKLKGRKVKSLEGDEVRPTADRVKESLFNILMN------KIEGSIFLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
+GIEA+SRG +FV+ + + + L F + ++V L++
Sbjct: 55 IGIEALSRGAQFCYFVDKSLKSIKCIRENVAELNLIPFAKILHRDVLKVIEILDK----- 109
Query: 227 GKDGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIK 268
+ FD + + PPY E + E+ + + G LVKI+
Sbjct: 110 -NNTKFDIIFLDPPYYQNLAEKTLIKLGEAKVLKEDGIIIAEHHKNDKIRERYGNLVKIR 168
Query: 269 DRRFGRTHLAIY 280
+ ++G T L+ Y
Sbjct: 169 ENKYGETILSFY 180
>gi|410727104|ref|ZP_11365327.1| RNA methyltransferase, RsmD family [Clostridium sp. Maddingley
MBC34-26]
gi|410599439|gb|EKQ53992.1| RNA methyltransferase, RsmD family [Clostridium sp. Maddingley
MBC34-26]
Length = 185
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 10/133 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR KL+ P M+ RP ++ VK A F +Q ++ +D+++GTGS
Sbjct: 1 MRIIAGKARGHKLIPPATMETRPTLDRVKEAMFSSIQ------LYIQEAVVVDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+E+ SRG SEV+ + V +L N+E F D + ++ + E ++ K
Sbjct: 55 LGLESASRGASEVYLFDKSS-VTFPLLKQNVENLKFQDFC--FPMNIDAY-EGLKKLANK 110
Query: 229 DGPFDYMSVTPPY 241
FD + + PPY
Sbjct: 111 GKKFDIIFIDPPY 123
>gi|407976028|ref|ZP_11156930.1| methyltransferase [Nitratireductor indicus C115]
gi|407428529|gb|EKF41211.1| methyltransferase [Nitratireductor indicus C115]
Length = 184
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 8/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +P+ +RP + + A F++L+ P L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRTLATPRSDAIRPTTDRTREALFNVLEHR--YPEKLEGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG S F+E + ++ N+E G S I E VG
Sbjct: 59 LGLEALSRGASFALFIE-EAAAARALIRTNVEAMGLQGRSKIFRRDATRLGE-----VGT 112
Query: 229 DGPFDYMSVTPPY 241
PFD + PPY
Sbjct: 113 MLPFDLVLADPPY 125
>gi|15605215|ref|NP_220001.1| methyltransferase [Chlamydia trachomatis D/UW-3/CX]
gi|76789224|ref|YP_328310.1| methyltransferase [Chlamydia trachomatis A/HAR-13]
gi|166154701|ref|YP_001654819.1| methyltransferase [Chlamydia trachomatis 434/Bu]
gi|166155576|ref|YP_001653831.1| methyltransferase [Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|237802915|ref|YP_002888109.1| methyltransferase [Chlamydia trachomatis B/Jali20/OT]
gi|255311303|ref|ZP_05353873.1| methyltransferase [Chlamydia trachomatis 6276]
gi|255317604|ref|ZP_05358850.1| methyltransferase [Chlamydia trachomatis 6276s]
gi|255507080|ref|ZP_05382719.1| methyltransferase [Chlamydia trachomatis D(s)2923]
gi|301335974|ref|ZP_07224218.1| methyltransferase [Chlamydia trachomatis L2tet1]
gi|339626169|ref|YP_004717648.1| RNA methyltransferase, RsmD family [Chlamydia trachomatis L2c]
gi|385240013|ref|YP_005807855.1| methyltransferase [Chlamydia trachomatis G/9768]
gi|385240938|ref|YP_005808779.1| methyltransferase [Chlamydia trachomatis G/11222]
gi|385242791|ref|YP_005810630.1| methyltransferase [Chlamydia trachomatis G/9301]
gi|385243694|ref|YP_005811540.1| Methyltransferase [Chlamydia trachomatis D-EC]
gi|385244574|ref|YP_005812418.1| Methyltransferase [Chlamydia trachomatis D-LC]
gi|385246400|ref|YP_005815222.1| methyltransferase [Chlamydia trachomatis G/11074]
gi|389858182|ref|YP_006360424.1| methyltransferase [Chlamydia trachomatis F/SW4]
gi|389859934|ref|YP_006362174.1| methyltransferase [Chlamydia trachomatis F/SW5]
gi|3328923|gb|AAC68087.1| Methylase [Chlamydia trachomatis D/UW-3/CX]
gi|76167754|gb|AAX50762.1| methyltransferase [Chlamydia trachomatis A/HAR-13]
gi|165930689|emb|CAP04186.1| methyltransferase [Chlamydia trachomatis 434/Bu]
gi|165931564|emb|CAP07140.1| methyltransferase [Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|231274149|emb|CAX10943.1| methyltransferase [Chlamydia trachomatis B/Jali20/OT]
gi|296436018|gb|ADH18192.1| methyltransferase [Chlamydia trachomatis G/9768]
gi|296436946|gb|ADH19116.1| methyltransferase [Chlamydia trachomatis G/11222]
gi|296437879|gb|ADH20040.1| methyltransferase [Chlamydia trachomatis G/11074]
gi|297140379|gb|ADH97137.1| methyltransferase [Chlamydia trachomatis G/9301]
gi|297748617|gb|ADI51163.1| Methyltransferase [Chlamydia trachomatis D-EC]
gi|297749497|gb|ADI52175.1| Methyltransferase [Chlamydia trachomatis D-LC]
gi|339460576|gb|AEJ77079.1| RNA methyltransferase, RsmD family [Chlamydia trachomatis L2c]
gi|380249254|emb|CCE14547.1| methyltransferase [Chlamydia trachomatis F/SW5]
gi|380250129|emb|CCE13658.1| methyltransferase [Chlamydia trachomatis F/SW4]
gi|440525411|emb|CCP50662.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
K/SotonK1]
gi|440526298|emb|CCP51782.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
L2b/8200/07]
gi|440527195|emb|CCP52679.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
D/SotonD1]
gi|440528088|emb|CCP53572.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
D/SotonD5]
gi|440528978|emb|CCP54462.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
D/SotonD6]
gi|440531659|emb|CCP57169.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
F/SotonF3]
gi|440532552|emb|CCP58062.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
G/SotonG1]
gi|440536123|emb|CCP61636.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis L2b/795]
gi|440537016|emb|CCP62530.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
L1/440/LN]
gi|440537905|emb|CCP63419.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
L1/1322/p2]
gi|440538795|emb|CCP64309.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis L1/115]
gi|440539684|emb|CCP65198.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis L1/224]
gi|440540576|emb|CCP66090.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
L2/25667R]
gi|440541464|emb|CCP66978.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
L3/404/LN]
gi|440542351|emb|CCP67865.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
L2b/UCH-2]
gi|440543242|emb|CCP68756.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
L2b/Canada2]
gi|440544133|emb|CCP69647.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis L2b/LST]
gi|440545023|emb|CCP70537.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
L2b/Ams1]
gi|440545913|emb|CCP71427.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
L2b/CV204]
gi|440914175|emb|CCP90592.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
L2b/Ams2]
gi|440915065|emb|CCP91482.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
L2b/Ams3]
gi|440915956|emb|CCP92373.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
L2b/Canada1]
gi|440916851|emb|CCP93268.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
L2b/Ams4]
gi|440917741|emb|CCP94158.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
L2b/Ams5]
Length = 190
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 21/163 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + VRP VVK A F+I C + R+LDL++G+GS
Sbjct: 1 MKILSGKFKGKSLKTFSNPSVRPTCGVVKEAVFNI------CANHIVGARFLDLFAGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS-SIHTVR--VETFLERAEQF 225
+G EAISRG FV+ V ++ NL LD + +H ++ V + L R
Sbjct: 55 MGFEAISRGAESATFVDSSVEAV-RLIRANL---ALLDSNLPVHILKQDVRSALLR---- 106
Query: 226 VGKDG-PFDYMSVTPPY---TAVDYEVVEYPLRTDMLDTCGCL 264
+GK FD + + PPY A EV+ Y ++ +L+ G L
Sbjct: 107 LGKQNRSFDIVYIDPPYALENAFLQEVLSYVVQQSLLEPDGIL 149
>gi|225620986|ref|YP_002722244.1| N6-adenine-specific methylase [Brachyspira hyodysenteriae WA1]
gi|225215806|gb|ACN84540.1| N6-adenine-specific methylase [Brachyspira hyodysenteriae WA1]
Length = 187
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 97/193 (50%), Gaps = 29/193 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ ++ G + +K+++PK D RP VK A F+I+ + +LDL SG+G+
Sbjct: 1 MHIISGNKKGRKIITPK-RDFRPTQGKVKEAFFNIID--------IENKTFLDLCSGSGA 51
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EA+SR F+E+D + + N + F D +I+ ++ + AE +V K
Sbjct: 52 MGFEALSRNAKFAAFIEIDREAIKTIF-SNAKAI-FNDNENIYKIKRVS----AEDYVKK 105
Query: 229 -DGPFDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWAQ 286
+ FD + + PPY + + ++V+ ++ ++L+ G L A +G D+ +
Sbjct: 106 TNDKFDVIYLDPPYHSKIYFDVINNIIKRNILNDNGVLA------------AEFGADYYK 153
Query: 287 KKRKSEKKIPIVT 299
K ++E+ I++
Sbjct: 154 KFLENEELKNIIS 166
>gi|399024597|ref|ZP_10726632.1| N6-adenine-specific methylase [Chryseobacterium sp. CF314]
gi|398080207|gb|EJL71029.1| N6-adenine-specific methylase [Chryseobacterium sp. CF314]
Length = 192
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 35/197 (17%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ GK + KK+ +PK DVRP + K A F IL++ ++ LDL++G G
Sbjct: 1 MYRIISGKWKAKKIAAPKNFDVRPTTDFAKEALFSILENT----YDMQSISVLDLFAGIG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS-SIHTVRVETF-------L 219
S+ E SRGC +V VEM+P S + E LD+S ++ R + F
Sbjct: 57 SISFEFASRGCKDVTSVEMNPKHTSFLNSTASE----LDMSLQVNVQRGDVFDWLKKFRN 112
Query: 220 ERAEQFVGKDGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLV------------KI 267
+A + V D PF+ + Y YE++ L L G + +
Sbjct: 113 RKAFEIVFADAPFE--TEEKKY----YEMLSLVLNNKYLKENGIFIVEHQSRLKFDHPNL 166
Query: 268 KD-RRFGRTHLAIYGPD 283
KD R++G + + P+
Sbjct: 167 KDTRKYGNVSFSFFEPN 183
>gi|392940862|ref|ZP_10306506.1| RNA methyltransferase, RsmD family [Thermoanaerobacter siderophilus
SR4]
gi|392292612|gb|EIW01056.1| RNA methyltransferase, RsmD family [Thermoanaerobacter siderophilus
SR4]
Length = 184
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 90/192 (46%), Gaps = 32/192 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + +K+ S +G +VRP + VK + F+IL + + +LDL++GTG+
Sbjct: 1 MRVIAGKLKGRKVKSLEGDEVRPTADRVKESLFNILMN------KIEGSIFLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
+GIEA+SRG +FV+ + + + L F + ++V L++
Sbjct: 55 IGIEALSRGAQFCYFVDKSLKSIKCIRENVAELNLIPFAKILHRDVLKVIEILDK----- 109
Query: 227 GKDGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIK 268
+ FD + + PPY E + E+ + + G LVKI+
Sbjct: 110 -NNTKFDIIFLDPPYYQNLAEKTLIKLGEAKVLKKDGIIIAEHHKNDKIRERYGNLVKIR 168
Query: 269 DRRFGRTHLAIY 280
+ ++G T L+ Y
Sbjct: 169 ENKYGETILSFY 180
>gi|358067394|ref|ZP_09153873.1| RsmD family RNA methyltransferase [Johnsonella ignava ATCC 51276]
gi|356694310|gb|EHI55972.1| RsmD family RNA methyltransferase [Johnsonella ignava ATCC 51276]
Length = 189
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 12/136 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L +P G + RP ++VK F+++ L R+LDL++G+G+
Sbjct: 1 MRVIAGTARRLLLKTPVGKNTRPTSDIVKETLFNMIND------KLYKARFLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FVE D + NLE T ++I ++++ F G+
Sbjct: 55 IGIEALSRGADMAVFVEND-LEACRCISYNLEHTRLDMYATI--LKMDVF-SAVRLLSGR 110
Query: 229 --DGPFDYMSVTPPYT 242
+ FD + + PPY
Sbjct: 111 ETESAFDIIFMDPPYN 126
>gi|329768889|ref|ZP_08260317.1| RsmD family RNA methyltransferase [Gemella sanguinis M325]
gi|328837252|gb|EGF86889.1| RsmD family RNA methyltransferase [Gemella sanguinis M325]
Length = 183
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 48/199 (24%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + KL S GM+ RP + +K F++L GR LDL+ GTG
Sbjct: 1 MRVIAGKYKSIKLNSVDGMNTRPTTDKIKENLFNMLDC---------EGRVLDLFGGTGG 51
Query: 169 VGIEAISRGCSEVHFVEMDPWVV----SNV---LIPNLEWTGFLDVSSIHTVRVETFLER 221
+GIE++SRG V F++ + SN+ IPN E+ + +R
Sbjct: 52 LGIESLSRGADYVTFIDGSNNAIKVIRSNIEKCRIPNSEYDIY-----------RNDYKR 100
Query: 222 AEQFVGKDGP-FDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLVK------------- 266
A + +GK G FD + + PPY + + + L D+ GCL+
Sbjct: 101 ALKILGKKGEKFDLIFLDPPYDKGLINQAISSILENDICSD-GCLIVCEKSVDEVVESKF 159
Query: 267 -----IKDRRFGRTHLAIY 280
+K++++G T++ I+
Sbjct: 160 EKLELVKEKKYGITNIIIF 178
>gi|345017794|ref|YP_004820147.1| methyltransferase [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033137|gb|AEM78863.1| methyltransferase [Thermoanaerobacter wiegelii Rt8.B1]
Length = 184
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 89/192 (46%), Gaps = 32/192 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + +K+ S G +VRP + VK + F+IL + + +LDL++GTG+
Sbjct: 1 MRVIAGKLKGRKVKSLDGSEVRPTADRVKESLFNILMN------KIEGSIFLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
+GIEA+SRG +FV+ + + + L F + ++V L++
Sbjct: 55 IGIEALSRGAQFCYFVDKSLKSIKCIRENVAELNLIPFAKILHRDVLKVIEILDK----- 109
Query: 227 GKDGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIK 268
+ FD + + PPY E + E+ + + G LVKI+
Sbjct: 110 -NNTKFDIIFLDPPYYQNLAEKTLIKLGEAKVLKEDGIIIAEHHKNDKIRERYGNLVKIR 168
Query: 269 DRRFGRTHLAIY 280
+ ++G T L+ Y
Sbjct: 169 ENKYGETILSFY 180
>gi|443289357|ref|ZP_21028451.1| putative RNA methylase; putative putative SAM-dependent
methyltransferase domain [Micromonospora lupini str.
Lupac 08]
gi|385887510|emb|CCH16525.1| putative RNA methylase; putative putative SAM-dependent
methyltransferase domain [Micromonospora lupini str.
Lupac 08]
Length = 187
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 83/191 (43%), Gaps = 31/191 (16%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G +++ +P G RP + V+ A F +++ L R+ DLY+G+G
Sbjct: 1 MTRIVAGTLGGRRIAAPPGAGTRPTSDRVREALFSAVEA----EVDLDGARFADLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG V VE DP + V+ N+ + T RV T L G
Sbjct: 57 AVGLEALSRGARHVLLVESDP-RAARVIRENVATLRAGSAVRLVTARVATVLAS-----G 110
Query: 228 KD-GPFDYMSVTPPYTAVDYE--------------------VVEYPLRTDMLDTCGCLVK 266
D GP+D + PPY D E VVE RT + +
Sbjct: 111 PDGGPYDVVFADPPYAVPDAEITALLTTLVDGGWLAPDALVVVERSRRTRQFEWVEGITP 170
Query: 267 IKDRRFGRTHL 277
+ RR+G T L
Sbjct: 171 ERSRRYGETTL 181
>gi|417644140|ref|ZP_12294157.1| RNA methyltransferase, RsmD family [Staphylococcus warneri VCU121]
gi|445059999|ref|YP_007385403.1| hypothetical protein A284_08210 [Staphylococcus warneri SG1]
gi|330685099|gb|EGG96765.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU121]
gi|443426056|gb|AGC90959.1| hypothetical protein A284_08210 [Staphylococcus warneri SG1]
Length = 180
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGIHKSKALESLEGRNTRPTMDKVKEGIFNSLHEVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL+ + S ++ + L + +
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-VIKSNLKQLDLISQSEVYKNNADRAL---KALAKR 108
Query: 229 DGPFDYMSVTPPYT 242
+ FDY+ + PPY
Sbjct: 109 EIQFDYIFLDPPYN 122
>gi|300814523|ref|ZP_07094779.1| RNA methyltransferase, RsmD family [Peptoniphilus sp. oral taxon
836 str. F0141]
gi|300511350|gb|EFK38594.1| RNA methyltransferase, RsmD family [Peptoniphilus sp. oral taxon
836 str. F0141]
Length = 188
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 30/190 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG R KL +P G++ RP ++ ++ + F+IL G LDL++G+G
Sbjct: 1 MRIIGGDCRGIKLSAPLGLNTRPTLDRIRESLFNILGQY------FNGGTVLDLFAGSGC 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
G+E +SRG +FV+ + NV+ N+E D S + + + L E F+ +
Sbjct: 55 NGLEFLSRGVDFSYFVD-NSSQSYNVITSNIEKRRLKDKSKVLKMDYKKAL---ESFLSE 110
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYPL--RTDMLDTCGCLV----------------KIKDR 270
F Y+ + PP+ DY + L +L G L+ +IK++
Sbjct: 111 --TFSYIYMDPPFMKRDYYIDSINLIKENRLLKKDGLLIIEHKTDDTFELPEGFSEIKNK 168
Query: 271 RFGRTHLAIY 280
++G T L+I+
Sbjct: 169 KYGNTSLSIW 178
>gi|323453306|gb|EGB09178.1| hypothetical protein AURANDRAFT_58958 [Aureococcus anophagefferens]
Length = 186
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 77/171 (45%), Gaps = 26/171 (15%)
Query: 133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVS 192
M V+ A F L S G A+ R R LD + G+GSVG+EA+SRG + FV++
Sbjct: 1 MGKVREALFSTLVSLG-VFAAPRRVRALDTFCGSGSVGVEALSRGAAAATFVDLS-RDAC 58
Query: 193 NVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDY-----E 247
+V + N F DV +I + A G D FD +++TPPY V Y
Sbjct: 59 DVALRNARACAFDDVEAICATAEDALATPALH--GGDRRFDLVTLTPPYEEVSYADLADR 116
Query: 248 VVEYPLRTD-----------------MLDTCGCLVKIKDRRFGRTHLAIYG 281
V E PL D L + LV +++RR+GRT L Y
Sbjct: 117 VAESPLLNDDCVVVFEYPVELGSLPPKLGSRDQLVGLRNRRYGRTVLGFYA 167
>gi|444432145|ref|ZP_21227304.1| hypothetical protein GS4_20_00900 [Gordonia soli NBRC 108243]
gi|443886974|dbj|GAC69025.1| hypothetical protein GS4_20_00900 [Gordonia soli NBRC 108243]
Length = 188
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 88/193 (45%), Gaps = 31/193 (16%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G+ ++L P RP + V+ A F+IL+S L R LDLY+G+G
Sbjct: 1 MTRIIAGRHGGRRLAVPDD-GTRPTSDRVREAVFNILES----RIDLDGARVLDLYAGSG 55
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG + V+ + V+ NL G DV S+ T RV A+ G
Sbjct: 56 ALGIEALSRGAASAALVDARRRATA-VIAKNLATVGAQDVGSVVTRRV------ADHLAG 108
Query: 228 KDGPFDYMSVTPPYT------AVDYE-------------VVEYPLRTDMLDTCGCLVKIK 268
FD + V PPY A + E VVE RT + G L +
Sbjct: 109 DAQIFDVVFVDPPYDLDGQVLAAELEVVAGRWLGADGIVVVERSARTPAVAVPGDLAVLV 168
Query: 269 DRRFGRTHLAIYG 281
++ +G T + + G
Sbjct: 169 EKVYGDTRVTVLG 181
>gi|16124482|ref|NP_419046.1| hypothetical protein CC_0227 [Caulobacter crescentus CB15]
gi|221233166|ref|YP_002515602.1| methyltransferase [Caulobacter crescentus NA1000]
gi|13421356|gb|AAK22214.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220962338|gb|ACL93694.1| methyltransferase [Caulobacter crescentus NA1000]
Length = 188
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 5/147 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R K + +P G RP + + A F+IL+ A P L R +D+++G+G+
Sbjct: 1 MRIVSGQFRGKAIAAPPGDATRPTSDRARQAVFNILEHAAWAP-ELHGARVIDVFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG S FVE D + N++ V+ +H R
Sbjct: 60 LGLEALSRGASFCLFVETDD-AARGAIRENIDAMHLFGVTRVHRRDATDLGPRPAS---A 115
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYPLRT 255
PFD + + PPY E LRT
Sbjct: 116 GAPFDIVFLDPPYAKGLGEKAVAELRT 142
>gi|297170258|gb|ADI21295.1| N6-adenine-specific methylase [uncultured gamma proteobacterium
HF0010_09F21]
Length = 184
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++ G +++ + K +++P E ++ F L+ + LDL++G+GS
Sbjct: 5 LRIISGTLGSRRIKTSKNANLKPTPEKLREKIFSWLK------PDIENSECLDLFAGSGS 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEAIS G F+E +P + N L N+ +D S +H R E F+ R K
Sbjct: 59 LGIEAISNGAKSCTFIEQNPSLYKN-LKDNISSLNVVDKSKLHRTRAEDFVRRF-----K 112
Query: 229 DGPFDYMSVTPPYT 242
+ F+ + PPYT
Sbjct: 113 EKGFNIIFFDPPYT 126
>gi|399890210|ref|ZP_10776087.1| methyltransferase [Clostridium arbusti SL206]
Length = 185
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ +KLLSP+G+ RP ++ +K + F I+Q+ + LD+++GTGS
Sbjct: 1 MRIIAGLAKGRKLLSPEGIGTRPTLDRIKESMFSIIQN------EVPYATVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG + + V+ P + +L N+E F + + L + + K
Sbjct: 55 LGLEAASRGAKQCYLVDKGP-ITFPILEKNVENLKFQQICKCLNMDSYNALNK----LAK 109
Query: 229 DG-PFDYMSVTPPY 241
DG F + V PPY
Sbjct: 110 DGIVFGLIFVDPPY 123
>gi|302337839|ref|YP_003803045.1| methyltransferase [Spirochaeta smaragdinae DSM 11293]
gi|301635024|gb|ADK80451.1| methyltransferase [Spirochaeta smaragdinae DSM 11293]
Length = 177
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 86/193 (44%), Gaps = 35/193 (18%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG R +K+ PKG+ +RP M+ ++ + F IL G +LD++SG+G
Sbjct: 1 MRITGGTYRGRKVRCPKGV-IRPAMDRMRESMFSILGPLDGYS-------FLDIFSGSGL 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIEA SRG V VE D +L N+E S+ + E+FL R
Sbjct: 53 VGIEAASRGAEPVVLVENDRGKRETIL-ENIEMVE--SKISLVMMSAESFLRRGR----- 104
Query: 229 DGPFDYMSVTPPY------------------TAVDYEVVEYPLRTDMLDTCGCLVKIKDR 270
G FD + + PP+ T ++ +P D G L+ R
Sbjct: 105 -GSFDIIYLDPPFPMPGKIDLIKVLSDSSLITEETKVLIHHPAEEQWPDEVGTLICYDTR 163
Query: 271 RFGRTHLAIYGPD 283
R+GR+ L + P+
Sbjct: 164 RYGRSLLRFFRPE 176
>gi|257066531|ref|YP_003152787.1| methyltransferase [Anaerococcus prevotii DSM 20548]
gi|256798411|gb|ACV29066.1| methyltransferase [Anaerococcus prevotii DSM 20548]
Length = 187
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 91/192 (47%), Gaps = 28/192 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L SPK RP VK A FD+L ++L DL+SGTG
Sbjct: 1 MRVVAGKYKGFILQSPKSNTSRPTDNKVKEAIFDMLYPFRNNFSAL------DLFSGTGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG EV F E + S +L N+E + S++ R++ F + +++
Sbjct: 55 MGIEFLSRGAREVTFNERNSSTFS-ILNKNIEK---VKASNVSVDRLD-FKKALKKYRDC 109
Query: 229 DGPFDYMSVTPPYTA-VDYEVVEYPLRTDMLDTCGCLVK----------------IKDRR 271
FDY+ + PPY + + V+ L ++L G ++ IK++
Sbjct: 110 GSSFDYIFLDPPYEGDLVKQSVKLILEYELLTNEGIIITESDKELDFSDMRELTLIKEKS 169
Query: 272 FGRTHLAIYGPD 283
+GR + IY +
Sbjct: 170 YGRKQVNIYKAN 181
>gi|68006113|ref|XP_670251.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56485326|emb|CAI03073.1| conserved hypothetical protein [Plasmodium berghei]
Length = 208
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 30/174 (17%)
Query: 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDP- 188
RPMM VK + F+IL G + +D +SG+G++GIE ISRG S V FV++
Sbjct: 9 RPMMSKVKESLFNILVHLG--VFNFNNINVIDAFSGSGNLGIECISRGLSNVTFVDLSLN 66
Query: 189 ---WVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD 245
+ N+ + N++ + I V L+ +F D ++ TPPY +
Sbjct: 67 SCRTICENLKLCNIQHVN----NKIIRSDVLELLKNPYKFDVLD-KYNLGFFTPPYEQII 121
Query: 246 YE------------------VVEYPLRTDML-DTCGCLVKIKDRRFGRTHLAIY 280
Y +EYP +ML L+ +++R+FGRT+ AIY
Sbjct: 122 YSELVHSISKSELFDNDALIFIEYPKEINMLPQKVDNLIGLRNRKFGRTYFAIY 175
>gi|150390529|ref|YP_001320578.1| putative methyltransferase [Alkaliphilus metalliredigens QYMF]
gi|149950391|gb|ABR48919.1| putative methyltransferase [Alkaliphilus metalliredigens QYMF]
Length = 187
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 90/187 (48%), Gaps = 22/187 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKA+ +L SP G+ RP + +K + F+I+Q+ + +DL+SG GS
Sbjct: 1 MRVIAGKAKGYRLQSPIGLQTRPTADRIKESLFNIIQN------DILHSTVIDLFSGAGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ---- 224
+GIEA+SRG ++ +F++ V + NL T +D++ I V+ + + ++
Sbjct: 55 LGIEALSRGANQAYFIDQSKNSVQAIK-ENLVRTKLIDLAEIIHSDVQRGMTQLKERRYH 113
Query: 225 --FVGKDGPFDYMSVTPPYTAVDYE---------VVEYPLRTDMLDTCGCLVKIKDRRFG 273
+ D P+ + P + +VE+ ++ G L + + +G
Sbjct: 114 ADIIFMDPPYGKDLIVPTIAGIVQNSLLQDQGMIIVEHENLDEVPAEIGHLTLFRQKNYG 173
Query: 274 RTHLAIY 280
+T ++ Y
Sbjct: 174 KTTISFY 180
>gi|440780895|ref|ZP_20959366.1| methyltransferase [Clostridium pasteurianum DSM 525]
gi|440221483|gb|ELP60688.1| methyltransferase [Clostridium pasteurianum DSM 525]
Length = 106
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 62/100 (62%), Gaps = 7/100 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ +KLLSP+GM+ RP ++ +K + F I+Q+ + LD+++GTGS
Sbjct: 1 MRIIAGLAKGRKLLSPEGMETRPTLDRIKESIFSIIQN------DVPYATVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208
+G+EA+SRG + + ++ P + +L N+E F +V
Sbjct: 55 LGLEAVSRGAKQCYLIDKSP-ITFPLLKKNVENLKFQNVC 93
>gi|237804837|ref|YP_002888991.1| methyltransferase [Chlamydia trachomatis B/TZ1A828/OT]
gi|376282496|ref|YP_005156322.1| methyltransferase [Chlamydia trachomatis A2497]
gi|385270189|ref|YP_005813349.1| Methyltransferase [Chlamydia trachomatis A2497]
gi|231273137|emb|CAX10050.1| methyltransferase [Chlamydia trachomatis B/TZ1A828/OT]
gi|347975329|gb|AEP35350.1| Methyltransferase [Chlamydia trachomatis A2497]
gi|371908526|emb|CAX09156.1| methyltransferase [Chlamydia trachomatis A2497]
gi|438690422|emb|CCP49679.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis A/7249]
gi|438691507|emb|CCP48781.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis A/5291]
gi|438692880|emb|CCP47882.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis A/363]
Length = 190
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 83/163 (50%), Gaps = 21/163 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + VRP VVK A F+I C + R+LDL++G+GS
Sbjct: 1 MKILSGKFKGKSLKTFSNPSVRPTCGVVKEAVFNI------CANHIVGARFLDLFAGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS-SIHTVR--VETFLERAEQF 225
+G EAISRG FV+ V ++ NL LD + +H ++ V + L R
Sbjct: 55 MGFEAISRGAESATFVDSSVEAV-RLIRANL---ALLDSNLPVHILKQDVRSALLR---- 106
Query: 226 VGK-DGPFDYMSVTPPY---TAVDYEVVEYPLRTDMLDTCGCL 264
+GK + FD + + PPY A EV+ Y ++ +L+ G L
Sbjct: 107 LGKQNCSFDIVYIDPPYALENAFLQEVLSYVVQQSLLEPDGIL 149
>gi|374854269|dbj|BAL57156.1| methyltransferase small domain superfamily protein [uncultured
prokaryote]
Length = 195
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V G+A+ K+L P+G+ RP + V+ A F+ L + LDL++G G+
Sbjct: 1 MRVAAGEAKGKRLRVPRGVAARPTQDRVREAIFNALAD------RVVDADVLDLFAGVGT 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FVE+DP + L NL GF + + L R EQ +
Sbjct: 55 LGIEALSRGARRSVFVELDPRAAAG-LRANLHAAGFTGRAEVWRADALRALRRLEQ---R 110
Query: 229 DGPFDYMSVTPPY 241
F + + PPY
Sbjct: 111 GDRFHLIFLDPPY 123
>gi|359411392|ref|ZP_09203857.1| methyltransferase [Clostridium sp. DL-VIII]
gi|357170276|gb|EHI98450.1| methyltransferase [Clostridium sp. DL-VIII]
Length = 183
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 18/137 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+AR KL+ P M+ RP ++ VK A F +QS P ++ +D+++GTGS
Sbjct: 1 MRIIAGRARGHKLIPPATMETRPTLDRVKEAMFSTIQSY--IPEAV----VVDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
+G+EA SRG EV+ + P + NV NL++ F +I E +
Sbjct: 55 LGLEAASRGADEVYLFDKSSDTFPLLKQNV--ENLKFQDFCFPMNIDA------YEGLRK 106
Query: 225 FVGKDGPFDYMSVTPPY 241
K FD + + PPY
Sbjct: 107 LAAKGKKFDIIFIDPPY 123
>gi|374997134|ref|YP_004972633.1| RsmD family RNA methyltransferase [Desulfosporosinus orientis DSM
765]
gi|357215500|gb|AET70118.1| RNA methyltransferase, RsmD family [Desulfosporosinus orientis DSM
765]
Length = 184
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 16/135 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R ++L + +G+ RP + VKGA F++L + R LDL++GTG+
Sbjct: 1 MRIIAGDLRGRQLKAVEGIHTRPTSDKVKGAIFNVLGE------KVLNSRVLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG SE VE + + + NLE G S + L A +F+ K
Sbjct: 55 LAIEALSRGSSEAVLVEKN-FAAYQTIKKNLEVLGVCQKSKL-------LLMDAFKFIHK 106
Query: 229 --DGPFDYMSVTPPY 241
D FD + + PPY
Sbjct: 107 NPDKVFDLIFLDPPY 121
>gi|147668815|ref|YP_001213633.1| putative methyltransferase [Dehalococcoides sp. BAV1]
gi|146269763|gb|ABQ16755.1| putative methyltransferase [Dehalococcoides sp. BAV1]
Length = 192
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 18/136 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW---LDLYSG 165
++++ G A+ K ++ P+ RP E+V+GA +L++ W LD+YSG
Sbjct: 1 MRIIAGDAKGKNIIVPQRKATRPATELVRGAMMSMLEAVAE--------DWSEVLDIYSG 52
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+GS+G+EA+SRG V FVE + +++ NLE G + ++ + V +A F
Sbjct: 53 SGSLGLEALSRGAGHVDFVEHE-RCCCDIIKQNLETIGCASHAHVYCLDV----PKAMAF 107
Query: 226 VGKDGPFDYMSVTPPY 241
+ K +D + PPY
Sbjct: 108 LKKQ--YDVILADPPY 121
>gi|448748029|ref|ZP_21729678.1| RNA methyltransferase, RsmD [Halomonas titanicae BH1]
gi|445564424|gb|ELY20545.1| RNA methyltransferase, RsmD [Halomonas titanicae BH1]
Length = 224
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 73/133 (54%), Gaps = 14/133 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GG+ RR++L +RP + V+ F+ L L + LDL++GTG+
Sbjct: 45 LRIIGGEFRRRQLPVLDSPGLRPTPDRVRETLFNWLGQ------QLYGQQVLDLFAGTGA 98
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG S V FVE DP V + L NL + + S++H V+T+L R +
Sbjct: 99 LGIEAVSRGASWVDFVERDPRVAAQ-LSTNLA-SLNITASAVHVNDVQTYLTRPAK---- 152
Query: 229 DGPFDYMSVTPPY 241
P+ + + PP+
Sbjct: 153 --PYTLVFLDPPF 163
>gi|270307618|ref|YP_003329676.1| methyltransferase [Dehalococcoides sp. VS]
gi|270153510|gb|ACZ61348.1| methyltransferase [Dehalococcoides sp. VS]
Length = 192
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 36/196 (18%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW---LDLYSG 165
++++ G A+ K ++ P+ RP E+V+GA +L++ W LD+YSG
Sbjct: 1 MRIIAGDAKGKNIIVPQRKATRPATELVRGAMMSMLEAIAE--------DWSEVLDIYSG 52
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+GS+G+EA+SRG V FVE + +++ NLE G + ++ + V +A F
Sbjct: 53 SGSLGLEALSRGAGHVDFVEHE-RCCCDIIKQNLETIGCASQAHVYCLDV----PKAIAF 107
Query: 226 VGKDGPFDYMSVTPPYTAVDY-EVVE-----------------YPLRTDMLDTCGCLVKI 267
+ K +D + PPY EV+E + + + G L +
Sbjct: 108 LKKQ--YDVILADPPYRNQQIGEVLEKLGNSGLIGESTVMAVTHSAHLTLAERYGRLKML 165
Query: 268 KDRRFGRTHLAIYGPD 283
K+ R G + +AIY D
Sbjct: 166 KEHRHGDSLIAIYRKD 181
>gi|379795494|ref|YP_005325492.1| putative methylase [Staphylococcus aureus subsp. aureus MSHR1132]
gi|356872484|emb|CCE58823.1| putative methylase [Staphylococcus aureus subsp. aureus MSHR1132]
Length = 180
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 12/133 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKSLESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V ++ NLE ++ S ++ + L+ + +
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-IIKSNLENLDLVEQSEVYKNNADRALKALSK---R 108
Query: 229 DGPFDYMSVTPPY 241
+ FD + + PPY
Sbjct: 109 EIQFDIIFLDPPY 121
>gi|160944906|ref|ZP_02092133.1| hypothetical protein FAEPRAM212_02422 [Faecalibacterium prausnitzii
M21/2]
gi|158444090|gb|EDP21094.1| RNA methyltransferase, RsmD family [Faecalibacterium prausnitzii
M21/2]
Length = 191
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 14/134 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++V+ G+AR ++L + G DV RP + VK A F I+Q L R LDLY+G+G
Sbjct: 1 MRVIAGEARGRRLEALPGTDVTRPTLSQVKEAMFSIVQF------DLPGARVLDLYAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+GIEA+SRG + F++ VS +++ N + G D S ++ FL +
Sbjct: 55 QLGIEALSRGAARCVFLDESREAVS-IVMRNCKACGVFDRSRVNIGEAARFLSACRE--- 110
Query: 228 KDGPFDYMSVTPPY 241
FD + + PP+
Sbjct: 111 ---QFDLVLLDPPF 121
>gi|386859432|ref|YP_006272138.1| N6-adenine-specific methylase, putative [Borrelia crocidurae str.
Achema]
gi|384934313|gb|AFI30986.1| N6-adenine-specific methylase, putative [Borrelia crocidurae str.
Achema]
Length = 181
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 90/184 (48%), Gaps = 21/184 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V GK + K+ P+ VRP+M +++ A F IL + + +LD+++GTG
Sbjct: 1 MRVSSGKYKGWKVACPRVGYVRPVMAIIREAFFSILFN------QILGINFLDVFTGTGI 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--- 225
+ +EA+SRG S VH V+ + + NVLI N + + + E FL + + F
Sbjct: 55 MSLEALSRGASLVHLVDYNKF-SKNVLIKNFDIVN--EPYKFFFTKAEFFLAKRDLFYDL 111
Query: 226 VGKDGPFDY------MSVTPPYTAVDYE---VVEYPLRTDMLDTCGCLVKIKDRRFGRTH 276
+ D PFDY + + +++ ++ YP R ++ + L K R++G +
Sbjct: 112 IYLDPPFDYPLKKKLLEIISKNKSLNKNAKIIIHYPARENLDNNILRLSKYDFRKYGGSR 171
Query: 277 LAIY 280
L +
Sbjct: 172 LDFF 175
>gi|238063277|ref|ZP_04607986.1| methyltransferase [Micromonospora sp. ATCC 39149]
gi|237885088|gb|EEP73916.1| methyltransferase [Micromonospora sp. ATCC 39149]
Length = 187
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 11/142 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G ++L +P G RP + V+ A F +Q+ L R+ DLY+G+G
Sbjct: 1 MTRIVAGTLGGRRLAAPPGAGTRPTSDRVREALFSAVQA----DVDLAGARFADLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG + V VE DP + V+ N+ + + T +V T L G
Sbjct: 57 AVGLEALSRGAAHVLLVESDP-RAARVVRENIAALRAAPAARLVTGKVATVLA-----AG 110
Query: 228 KD-GPFDYMSVTPPYTAVDYEV 248
D GP+D + PPY D +V
Sbjct: 111 PDGGPYDVVFADPPYAVPDADV 132
>gi|398782213|ref|ZP_10546031.1| putative RNA methylase [Streptomyces auratus AGR0001]
gi|396996950|gb|EJJ07929.1| putative RNA methylase [Streptomyces auratus AGR0001]
Length = 199
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 15/146 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F +S G L R LDLY G+G
Sbjct: 1 MTRVIAGTAGGRRLAVPPGNGTRPTSDRAREGMFSTWESLDG---PLAGARVLDLYGGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG + V VE D V + +V ++ VE +AEQ G
Sbjct: 58 AVGLEALSRGAAHVLLVEADARAVRTIRD---------NVRTVGLPGVEVRAGKAEQTAG 108
Query: 228 K---DGPFDYMSVTPPYTAVDYEVVE 250
P+D + + PPY D E+ E
Sbjct: 109 APPPGEPYDVIFLDPPYVVTDAELCE 134
>gi|78044003|ref|YP_360292.1| methyltransferase [Carboxydothermus hydrogenoformans Z-2901]
gi|77996118|gb|ABB15017.1| putative methyltransferase [Carboxydothermus hydrogenoformans
Z-2901]
Length = 184
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 26/197 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +KL++PKG+ RP + VK A F+IL + LD ++GTG+
Sbjct: 1 MRIITGDARGRKLIAPKGLKTRPTSDRVKEAMFNILGY------RVIDAVVLDGFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG +F+E D S L N+E G+ D + + L +
Sbjct: 55 LGLEALSRGAKFSYFIEADREAFS-CLRRNIENLGYGDRAKAILGDIFKILPHINE---- 109
Query: 229 DGPFDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLV---------KIKDRRFGRTHLA 278
FD + + PPY + V L+ +L G +V I + G A
Sbjct: 110 --KFDLIFLDPPYGYGFEERAVLTILQLGLLKETGLIVVETAKKIGLNISSEKLGLIREA 167
Query: 279 IYGP---DWAQKKRKSE 292
+YG + Q KR E
Sbjct: 168 VYGNTLLGFYQLKRGGE 184
>gi|209548085|ref|YP_002280002.1| methyltransferase [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209533841|gb|ACI53776.1| methyltransferase [Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 186
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK ++RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNEIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHG-RTRILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPY 241
G FD + PPY
Sbjct: 111 GNLEAFDVLFADPPY 125
>gi|227499433|ref|ZP_03929544.1| possible rRNA (guanine-N(2)-)-methyltransferase [Anaerococcus
tetradius ATCC 35098]
gi|227218495|gb|EEI83738.1| possible rRNA (guanine-N(2)-)-methyltransferase [Anaerococcus
tetradius ATCC 35098]
Length = 187
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGR-WLDLYSGTG 167
++V+ GK + LLSPK RP VK A FD+L +P LDL+SGTG
Sbjct: 1 MRVVAGKYKGFNLLSPKVNSSRPTDNKVKEAIFDML-------FPYKPDFVALDLFSGTG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+GIE +SRG EV+F E + S +L NL + V S +++ F + + +
Sbjct: 54 QMGIEFLSRGAREVYFNEKNSSTHS-ILKENLSK---IKVDSAKITKLD-FRKALKYYKE 108
Query: 228 KDGPFDYMSVTPPYTA-VDYEVVEYPLRTDMLDTCGCLVKIKDRRF---GRTHLAI 279
+ FDY+ + PPY + + +E + ++L+ G ++ DR GR L I
Sbjct: 109 EKLKFDYIFLDPPYDGDMLKQAIELIIECELLNDEGIIITESDRELDFSGRGGLNI 164
>gi|242373354|ref|ZP_04818928.1| possible rRNA (guanine-N(2)-)-methyltransferase [Staphylococcus
epidermidis M23864:W1]
gi|242348717|gb|EES40319.1| possible rRNA (guanine-N(2)-)-methyltransferase [Staphylococcus
epidermidis M23864:W1]
Length = 180
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 15/159 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLHEVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL + + ++ + L + +
Sbjct: 53 LGIEALSRGMEKVIFVDQNFKAVK-VIKANLNQLDLMSQAEVYKNNADRAL---KALAKR 108
Query: 229 DGPFDYMSVTPPYTA--VDYEVVEYPLRTDMLDTCGCLV 265
+ FD + + PPY +D E +E ++L G +V
Sbjct: 109 EIQFDIIFLDPPYKKGLID-EAIERISEFNLLKENGIIV 146
>gi|29839903|ref|NP_829009.1| hypothetical protein CCA00135 [Chlamydophila caviae GPIC]
gi|29834250|gb|AAP04887.1| conserved hypothetical protein TIGR00095 [Chlamydophila caviae
GPIC]
Length = 189
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 66/140 (47%), Gaps = 22/140 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L VRP VVK A F+I C A + +LDL+SG GS
Sbjct: 1 MKILAGKYKGKSLKIFSNPSVRPTCGVVKEAVFNI------CAAYIEDATFLDLFSGVGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVV------SNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
VG EA+SRG S V FV+ V S +L P+L T I + ++R
Sbjct: 55 VGFEALSRGASSVTFVDSSAQSVRLIRANSQLLHPDLPVT-------IMKQEARSAIQRL 107
Query: 223 EQFVGKDGPFDYMSVTPPYT 242
+ K FD + + PPY
Sbjct: 108 TK---KGMSFDLIYIDPPYN 124
>gi|424915334|ref|ZP_18338698.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|392851510|gb|EJB04031.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 186
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK ++RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNEIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHG-RTRILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPY 241
G FD + PPY
Sbjct: 111 GNLEAFDVLFADPPY 125
>gi|418472121|ref|ZP_13041891.1| DNA methylase [Streptomyces coelicoflavus ZG0656]
gi|371547281|gb|EHN75671.1| DNA methylase [Streptomyces coelicoflavus ZG0656]
Length = 195
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 76/166 (45%), Gaps = 16/166 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ GKA ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGKAGGRRLAVPPGTGTRPTSDRAREGLFSTWQSLLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV- 226
+VG+EA+SRG V VE D V +V SI + +AEQ +
Sbjct: 59 AVGLEALSRGAGHVLLVEADARAARTVR---------ENVKSIGLPGADVRAGKAEQIIR 109
Query: 227 --GKDGPFDYMSVTPPYTAVDYEVVE--YPLRTDMLDTCGCLVKIK 268
P+D + + PPY D ++ E LRT+ LV ++
Sbjct: 110 TPAPAEPYDVVFLDPPYAVSDDDLREILLTLRTEGWLATEALVTVE 155
>gi|408418062|ref|YP_006759476.1| hypothetical protein TOL2_C06030 [Desulfobacula toluolica Tol2]
gi|405105275|emb|CCK78772.1| conserved uncharacterized protein, putative methylase
[Desulfobacula toluolica Tol2]
Length = 180
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 80/159 (50%), Gaps = 16/159 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + +KL +G +RP + + A F+IL +++ + LDL++GTG+
Sbjct: 1 MRIISGSCKGRKLFKLQGRQIRPTSDRTREAVFNIL------GQNIKKAKVLDLFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F++ D +++ NL F S++ + +A F
Sbjct: 55 LGIEALSRGAEHTTFIDRD----CDIIRQNLNICRFEKNSTVICCDI----LKANPFKSL 106
Query: 229 DG-PFDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGCLV 265
+G F+ + + PPY + +E TD+L+ G ++
Sbjct: 107 NGQQFNIVFIDPPYGKGYIEQTLEKEFFTDLLNENGIII 145
>gi|262198143|ref|YP_003269352.1| methyltransferase [Haliangium ochraceum DSM 14365]
gi|262081490|gb|ACY17459.1| methyltransferase [Haliangium ochraceum DSM 14365]
Length = 191
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 8/165 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG ++LL+P G RP + V+ A F+IL G PA R LD+ +G+G
Sbjct: 1 MRIIGGHLGGRRLLAPPGDGTRPTSDRVREALFNIL---GPPPAG---ARVLDVCAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG V F+E P + L N+ G ++ R +
Sbjct: 55 LGLEALSRGAEAVCFIERAPAAL-RALRNNIAALGVGGACTVVRGEACAIAGRWARAESA 113
Query: 229 DGPFDYMSVTPPYTA-VDYEVVEYPLRTDMLDTCGCLVKIKDRRF 272
FD++ + PPY + V +++ + +L GC V DRR
Sbjct: 114 PAAFDWIFLDPPYRSDVSAQMLNILGASALLGDGGCAVVEHDRRL 158
>gi|295104207|emb|CBL01751.1| RNA methyltransferase, RsmD family [Faecalibacterium prausnitzii
SL3/3]
Length = 191
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 14/134 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++V+ G+AR ++L + G DV RP + VK A F I+Q L R LDLY+G+G
Sbjct: 1 MRVIAGEARGRRLEALPGTDVTRPTLSQVKEAMFSIVQF------DLPGARVLDLYAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+GIEA+SRG + F++ VS +++ N + G D S ++ FL +
Sbjct: 55 QLGIEALSRGAARCVFLDESREAVS-IVMRNCKACGVFDRSRVNIGEAARFLSACRE--- 110
Query: 228 KDGPFDYMSVTPPY 241
FD + + PP+
Sbjct: 111 ---QFDLVLLDPPF 121
>gi|427723432|ref|YP_007070709.1| methyltransferase [Leptolyngbya sp. PCC 7376]
gi|427355152|gb|AFY37875.1| methyltransferase [Leptolyngbya sp. PCC 7376]
Length = 182
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 74/170 (43%), Gaps = 31/170 (18%)
Query: 130 RPMMEVVKGAAFDILQ-SAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDP 188
RP + V+ A F+I Q GC RWLDL +G+GS+G EA+ RG + +E +P
Sbjct: 18 RPTLAKVREAIFNIWQGQVQGC-------RWLDLCAGSGSMGAEALCRGAVQAVGIEKNP 70
Query: 189 WVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYE- 247
I N W V L+R E G FD + PPY A Y+
Sbjct: 71 RACR---IINENWEKVAKDDQTFQVLKGDVLKRMESLGGD--RFDLIYFDPPYAAKFYQP 125
Query: 248 VVEYPLRTDMLDTCG-----------------CLVKIKDRRFGRTHLAIY 280
V+E + D+L++ G L K KD+ +G+T +A Y
Sbjct: 126 VLEKVIALDLLNSNGEMAVEYDPKLWQPIELEGLEKFKDKNYGKTAIAFY 175
>gi|91975754|ref|YP_568413.1| hypothetical protein RPD_1274 [Rhodopseudomonas palustris BisB5]
gi|91682210|gb|ABE38512.1| conserved hypothetical protein 95 [Rhodopseudomonas palustris
BisB5]
Length = 185
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 8/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + L++P D+RP + ++ + F+IL A G P S R LDL++GTG+
Sbjct: 1 MRVIGGRLRGRNLVAPSSRDIRPTADRLRESLFNILMHAYGDPIS--DARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA SRG FV+ + +L N+E G ++ ++ R L A
Sbjct: 59 LGIEAASRGAKFTLFVD-NGAEARALLRANVEALGLGGITKVYR-RDAANLGPAHPVE-- 114
Query: 229 DGPFDYMSVTPPY 241
PF + + PPY
Sbjct: 115 --PFSLVFLDPPY 125
>gi|170757382|ref|YP_001782037.1| methyltransferase [Clostridium botulinum B1 str. Okra]
gi|429246594|ref|ZP_19209911.1| methyltransferase [Clostridium botulinum CFSAN001628]
gi|169122594|gb|ACA46430.1| RNA methyltransferase, RsmD family [Clostridium botulinum B1 str.
Okra]
gi|428756387|gb|EKX78942.1| methyltransferase [Clostridium botulinum CFSAN001628]
Length = 185
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 10/134 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+LSP+ RP ++ +K + F+I+Q+ + LD+++GTGS
Sbjct: 1 MRIISGSARGRKILSPQSSVTRPTLDRIKESIFNIIQN------QVYGSGVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG + V+ P +L N++ F D+ + + L E+F K
Sbjct: 55 LGLEAASRGAKFSYLVDKSPETYP-LLRENIKNLKFEDLCKSFNMDAYSAL---EEFARK 110
Query: 229 DGPFDYMSVTPPYT 242
FD + + PPY
Sbjct: 111 SIVFDLIFIDPPYA 124
>gi|429123222|ref|ZP_19183755.1| N6-adenine-specific methylase [Brachyspira hampsonii 30446]
gi|426280822|gb|EKV57826.1| N6-adenine-specific methylase [Brachyspira hampsonii 30446]
Length = 187
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 92/186 (49%), Gaps = 29/186 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ ++ G + +K+ +PK D RP VK A F+I+ + +LDL SG+G+
Sbjct: 1 MHIISGNKKGRKITTPK-RDFRPTQGKVKEAFFNIID--------IENKTFLDLCSGSGA 51
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EA+SR V F+E+D V + N + T F + +++ ++ + AE +V K
Sbjct: 52 MGFEALSRNARFVTFIEIDREAVKTIF-SNAK-TIFDNDENLYKIKRVS----AEDYVKK 105
Query: 229 -DGPFDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWAQ 286
D FD + + PPY + + ++V+ ++ +ML G L A +G D+ +
Sbjct: 106 TDDKFDVIYLDPPYHSKIYFDVINNIIKRNMLHDNGVLA------------AEFGADYYK 153
Query: 287 KKRKSE 292
K +E
Sbjct: 154 KFLDNE 159
>gi|407477666|ref|YP_006791543.1| hypothetical protein Eab7_1827 [Exiguobacterium antarcticum B7]
gi|407061745|gb|AFS70935.1| Hypothetical protein Eab7_1827 [Exiguobacterium antarcticum B7]
Length = 189
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 12/158 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + ++ + G RP + VK + F+++ G+ LDL++G+G
Sbjct: 1 MRVISGERKGMRIKAVPGDQTRPTTDKVKESLFNVI------GPYFNGGKALDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRGC E FV+ V + NLE T D S + +R + + AE +
Sbjct: 55 LGIEALSRGCDEAVFVDQSFKAVQTIK-ENLETTRLTDRSRV--LRKDVTVALAE--LAT 109
Query: 229 DGPFDYMSVTPPYTAVDY-EVVEYPLRTDMLDTCGCLV 265
+ PF + + PPY + V Y R DML G ++
Sbjct: 110 EEPFKLIFLDPPYAKEQLADQVAYIERHDMLTDNGVII 147
>gi|289450650|ref|YP_003474688.1| RsmD family RNA methyltransferase [Clostridiales genomosp. BVAB3
str. UPII9-5]
gi|289185197|gb|ADC91622.1| RNA methyltransferase, RsmD family [Clostridiales genomosp. BVAB3
str. UPII9-5]
Length = 190
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 110 QVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169
+V+ G AR +L+ PKG RP + K F++LQ+ S LDL++G+G +
Sbjct: 3 RVISGMARSIQLVCPKGRTTRPSADKTKEGIFNVLQA----RLSFAGLHVLDLFAGSGQL 58
Query: 170 GIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229
IEA+SRG + V+ +I NL+ T +++ I+T V FL +A +
Sbjct: 59 AIEALSRGAARATLVDRSNEARQAQII-NLQKTHLTELADIYTTSVAGFLNQAAV---RS 114
Query: 230 GPFDYMSVTPPYT 242
FD + + PPY
Sbjct: 115 EKFDLILMDPPYA 127
>gi|262038077|ref|ZP_06011482.1| RNA methyltransferase, RsmD family [Leptotrichia goodfellowii
F0264]
gi|261747897|gb|EEY35331.1| RNA methyltransferase, RsmD family [Leptotrichia goodfellowii
F0264]
Length = 186
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 15/160 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ G + +K+ S +G + RP +E +K A F I+ + ++LDLYSGTG+
Sbjct: 1 MRITAGMLKNRKIKSREGRETRPTLERIKEAIFSII------GEQVVEAKFLDLYSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
+ IEA+SRG +E D + ++ I NL R L+R
Sbjct: 55 MAIEALSRGAGRAVMIEQDKEALRIIIENINNLSLENKCRAYKNDVFRAIEILDR----- 109
Query: 227 GKDGPFDYMSVTPPYTA-VDYEVVEYPLRTDMLDTCGCLV 265
K+ FD + + PPY + + +E +++L G ++
Sbjct: 110 -KNEKFDIIFMDPPYKENISAQTIEKISESNILSEEGIII 148
>gi|389575665|ref|ZP_10165693.1| RNA methyltransferase, RsmD family [Eubacterium cellulosolvens 6]
gi|389311150|gb|EIM56083.1| RNA methyltransferase, RsmD family [Eubacterium cellulosolvens 6]
Length = 189
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 13/148 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R L + G D RP + +K F+++Q+ + +LDL++G+G+
Sbjct: 1 MRVIAGKCRSLPLKTLPGRDTRPTTDRIKETLFNVMQN------DIPQACFLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ V V+ NL + D + ++ + + A + +
Sbjct: 55 IGIEALSRGAQSCCFVDQSRKAVE-VIKENLAFCRLTDQAEVYQMDAVS----AVKSLAN 109
Query: 229 DGPFDYMSVTPPYTA-VDYEVVEYPLRT 255
PFD + + PPY ++ EV+E LRT
Sbjct: 110 HEPFDVVFMDPPYLHDLEKEVME-ALRT 136
>gi|291533323|emb|CBL06436.1| RNA methyltransferase, RsmD family [Megamonas hypermegale ART12/1]
Length = 190
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 15/153 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR KL +PKG + RP + +K + F+IL S + LDL+SGTG+
Sbjct: 1 MRIITGSARGAKLKAPKGQNTRPTADRIKESLFNILGSF------IYDKNVLDLFSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG + V+ +S + N T +D S+I ++ + F ++ K
Sbjct: 55 LSLEALSRGANHAIMVDCSLDSISTIKF-NATHTKLIDKSTI--LKADVF-ATIKKLHLK 110
Query: 229 DGPFDYMSVTPPYTA-----VDYEVVEYPLRTD 256
FD + PPY V + EYPL T+
Sbjct: 111 QTKFDIIFCDPPYHQDLCLKVLQMLHEYPLLTE 143
>gi|331269672|ref|YP_004396164.1| putative methyltransferase [Clostridium botulinum BKT015925]
gi|329126222|gb|AEB76167.1| putative methyltransferase [Clostridium botulinum BKT015925]
Length = 187
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 92/191 (48%), Gaps = 28/191 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ KK+L P+ M RP ++ VK F+I+Q+ + +D+++GTGS
Sbjct: 3 MRIIAGRAKGKKILPPEDMVTRPTLDRVKENIFNIIQN------RVVDAVAVDVFAGTGS 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+E++SRG + + ++ P V L N++ F + + + L + F K
Sbjct: 57 LGLESVSRGAKQCYLIDRYP-VTFKRLQQNVKDLKFENECTCLNMDSYAAL---KDFAKK 112
Query: 229 DGPFDYMSVTPPYT------AVDYEVVEYPLRTDMLDTCGC------------LVKIKDR 270
+ FD + + PPY A++ E L D L C +V ++DR
Sbjct: 113 NKIFDLIFIDPPYAKEMIPPAIEIISQEKLLHEDGLIVCKIDSSEEIYQGNDDIVLVQDR 172
Query: 271 RFGRTHLAIYG 281
R+G T + Y
Sbjct: 173 RYGNTTVCFYA 183
>gi|229829109|ref|ZP_04455178.1| hypothetical protein GCWU000342_01194 [Shuttleworthia satelles DSM
14600]
gi|229792272|gb|EEP28386.1| hypothetical protein GCWU000342_01194 [Shuttleworthia satelles DSM
14600]
Length = 181
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR +LL+P+G+ RP + VK F+ILQ+ + +LDL++G+G
Sbjct: 1 MRVIAGSARRLQLLTPRGLKTRPTQDRVKETLFNILQN------EVEGAYFLDLFAGSGQ 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG FV+
Sbjct: 55 MGIEALSRGARAASFVD 71
>gi|385241868|ref|YP_005809708.1| methyltransferase [Chlamydia trachomatis E/11023]
gi|385245474|ref|YP_005814297.1| methyltransferase [Chlamydia trachomatis E/150]
gi|386262843|ref|YP_005816122.1| methyltransferase [Chlamydia trachomatis Sweden2]
gi|389859058|ref|YP_006361299.1| methyltransferase [Chlamydia trachomatis E/SW3]
gi|289525531|emb|CBJ15009.1| methyltransferase [Chlamydia trachomatis Sweden2]
gi|296435090|gb|ADH17268.1| methyltransferase [Chlamydia trachomatis E/150]
gi|296438811|gb|ADH20964.1| methyltransferase [Chlamydia trachomatis E/11023]
gi|380251007|emb|CCE12769.1| methyltransferase [Chlamydia trachomatis E/SW3]
gi|440529869|emb|CCP55353.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
E/SotonE4]
gi|440530768|emb|CCP56252.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis
E/SotonE8]
gi|440535236|emb|CCP60746.1| 16S rRNA m(2)G966-methyltransferase [Chlamydia trachomatis E/Bour]
Length = 190
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 82/163 (50%), Gaps = 21/163 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + VRP VVK A F+I C + R+LDL++G+GS
Sbjct: 1 MKILSGKFKGKSLKTFSNPSVRPTCGVVKEAVFNI------CANHIVGARFLDLFAGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS-SIHTVR--VETFLERAEQF 225
+G EAISRG FV+ V ++ NL LD + +H ++ V + L R
Sbjct: 55 MGFEAISRGAESATFVDSSVEAV-RLIRANL---ALLDSNLPVHILKQDVRSALLR---- 106
Query: 226 VGKDG-PFDYMSVTPPYTAVDY---EVVEYPLRTDMLDTCGCL 264
+GK FD + + PPY + EV+ Y ++ +L+ G L
Sbjct: 107 LGKQNRSFDIVYIDPPYALENVFLQEVLSYVVQQSLLEPDGIL 149
>gi|163758413|ref|ZP_02165501.1| hypothetical protein HPDFL43_02270 [Hoeflea phototrophica DFL-43]
gi|162284702|gb|EDQ34985.1| hypothetical protein HPDFL43_02270 [Hoeflea phototrophica DFL-43]
Length = 187
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + + +PK +RP + + + F+IL P +L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRSIAAPKTSSIRPTTDRTRESLFNILSHT--YPEALDGVRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
+G+EA+SRGC FVE V+ N+E G R F A +
Sbjct: 59 LGLEALSRGCRTALFVE-SGVEGRGVIQKNIETLGLQG-------RARLFRRDATKLGPA 110
Query: 227 GKDGPFDYMSVTPPY 241
G GPF + PPY
Sbjct: 111 GTSGPFALVFADPPY 125
>gi|417002358|ref|ZP_11941747.1| RNA methyltransferase, RsmD family [Anaerococcus prevotii
ACS-065-V-Col13]
gi|325479499|gb|EGC82595.1| RNA methyltransferase, RsmD family [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 187
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 30/190 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRPGRWLDLYSGTG 167
++V+ GK + L PK RP VK A FD+L C A LDL+SGTG
Sbjct: 1 MRVVAGKYKGFNLKPPKEKTSRPTDNKVKEAIFDMLYPLKSNCVA-------LDLFSGTG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+GIE +SRG + V+F E + + +L NL ++ I +++ F + +++
Sbjct: 54 QMGIEFLSRGVNLVYFNERN-FSTYKILNENLRK---INSDGIKVSKLD-FKKALKKYKD 108
Query: 228 KDGPFDYMSVTPPYTA-VDYEVVEYPLRTDMLDTCGCLV----------------KIKDR 270
+ FDY+ + PPY + + +E + D+L+ G +V KIK++
Sbjct: 109 NNISFDYIFLDPPYMGDLLNQAIELIVEYDLLNEEGIIVTESDRDLDFSYIETLEKIKEK 168
Query: 271 RFGRTHLAIY 280
+GR + Y
Sbjct: 169 SYGRKIIKFY 178
>gi|317132996|ref|YP_004092310.1| methyltransferase [Ethanoligenens harbinense YUAN-3]
gi|315470975|gb|ADU27579.1| methyltransferase [Ethanoligenens harbinense YUAN-3]
Length = 185
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 29/188 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +L + G++ RP E VK A F +Q L R LDL++G+G
Sbjct: 1 MRVITGSARGARLETLSGLETRPTAERVKEALFSSIQF------ELEGRRVLDLFAGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE++SRG + FV+ V ++ NL T + + + E FL RA +
Sbjct: 55 LGIESLSRGAALAVFVDQSADAV-KIIKANLTHTRLFEKARVLETEAELFLARAPE---- 109
Query: 229 DGPFDYMSVTPPY----------------TAVDYEVVEYPLRTDMLDTCGCLVKIKDRRF 272
+D + + PPY +A V E M + G L ++ + +
Sbjct: 110 --TYDVIFLDPPYHHGFLEKLLPHAAAHLSAHGVLVAEGAKDDSMPEAVGDLRLVQKKSY 167
Query: 273 GRTHLAIY 280
G+T + Y
Sbjct: 168 GKTAIGFY 175
>gi|407779728|ref|ZP_11126981.1| methyltransferase [Nitratireductor pacificus pht-3B]
gi|407298498|gb|EKF17637.1| methyltransferase [Nitratireductor pacificus pht-3B]
Length = 184
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 8/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG R + L +P+ D+RP + + A F+IL+ L R LDL++GTG+
Sbjct: 1 MRVVGGAFRGRALAAPRTDDIRPTTDRTREALFNILEHR--FAERLAGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG S FVE + ++ N+E S I E VG
Sbjct: 59 LGIEALSRGASFALFVE-EAAAARGLIRTNVETLSLQGRSKIFRRDATRLGE-----VGT 112
Query: 229 DGPFDYMSVTPPY 241
PFD + PPY
Sbjct: 113 MLPFDLVLADPPY 125
>gi|302383493|ref|YP_003819316.1| methyltransferase [Brevundimonas subvibrioides ATCC 15264]
gi|302194121|gb|ADL01693.1| methyltransferase [Brevundimonas subvibrioides ATCC 15264]
Length = 188
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + + +++P+G RP + + A F++L+ A L+ R +DL++G+G+
Sbjct: 1 MRIVSGKLKGRAIVAPEGQGTRPTSDRARQAVFNVLEHAA-WAEPLQGMRVMDLFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EAISRG + FVE D + V+ N + G L + +H R G
Sbjct: 60 LGFEAISRGAAFCLFVETDE-LARGVIRENADAYGLLGTTRVHRRSAVDLGVRP----GS 114
Query: 229 DG-PFDYMSVTPPY 241
DG FD + PPY
Sbjct: 115 DGEAFDLAFLDPPY 128
>gi|284032692|ref|YP_003382623.1| methyltransferase [Kribbella flavida DSM 17836]
gi|283811985|gb|ADB33824.1| methyltransferase [Kribbella flavida DSM 17836]
Length = 196
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 36/207 (17%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++GG AR +++ P G RP + V+ A F L+S G L LDLY+G+G
Sbjct: 1 MTRIIGGAARGRRIGVPAGTGTRPTADRVREAMFSSLESEFGTLLGLNV---LDLYAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER-AEQFV 226
+VG+EA+SRG + VE D ++V+ N+ G T L R AE+
Sbjct: 58 AVGLEALSRGAARAVLVEADR-RAADVIAANIRVVGLPGA---------TLLTRPAEKVA 107
Query: 227 GKD--GPFDYMSVTPPYTAVDYEVVEYPL----RTDMLDTCGCLVK-------------- 266
D PFD + PPY E+ + L R + D +++
Sbjct: 108 QGDNPAPFDLVFADPPYRLETAELQDVLLALAERGWLADDAVVVIERGKREPWEWPAGFA 167
Query: 267 -IKDRRFGRTHLAIYGPDWAQKKRKSE 292
++DR++G T L YG Q+ SE
Sbjct: 168 ALRDRKYGETRL-WYGHRHEQETGVSE 193
>gi|325678315|ref|ZP_08157941.1| RNA methyltransferase, RsmD family [Ruminococcus albus 8]
gi|324109995|gb|EGC04185.1| RNA methyltransferase, RsmD family [Ruminococcus albus 8]
Length = 182
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 13/133 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G R KKL + + +D RP ++VK A F +Q + + LDL++G+G
Sbjct: 1 MRVITGSRRGKKLKTLEALDTRPTTDMVKEAVFSAIQF------DVAGSQVLDLFAGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SR S FV+ +P V V+ N+ F+ S + + +L+ A+
Sbjct: 55 MGIEALSRDASHCVFVDNNPAAV-QVIKENISDCKFVTESRVLNMDSLDYLKVAK----- 108
Query: 229 DGPFDYMSVTPPY 241
G FD + + PPY
Sbjct: 109 -GQFDIVLLDPPY 120
>gi|224372530|ref|YP_002606902.1| N6-adenine-specific methylase [Nautilia profundicola AmH]
gi|223589616|gb|ACM93352.1| N6-adenine-specific methylase [Nautilia profundicola AmH]
Length = 192
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 88/195 (45%), Gaps = 32/195 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R KKL R ++K + F+ LQ P S W++++SG GS
Sbjct: 6 IKIIGGKYRGKKLYMGDKEVTRSTKNILKESVFNTLQWE--VPDST----WVEMFSGVGS 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV-G 227
+G+EAISRG + +F+E DP + VL N++ I ET + E+
Sbjct: 60 IGLEAISRGAKKAYFLEKDP-EAARVLKKNIDSMDPEKCEIILGDSFETVWDVIEKLKRD 118
Query: 228 KDGPFDYMSVTPPYTAVD-----YEVVEYPLRT-----------------DMLDTCGCLV 265
KD F Y PP+ + YE V++ ++ D + G
Sbjct: 119 KDRAFFYFD--PPFAIREGYEDIYEKVQHLIKQLPKNNVEKVLIEHQSDYDFPEELGLYK 176
Query: 266 KIKDRRFGRTHLAIY 280
KIK R+FG++ + Y
Sbjct: 177 KIKTRKFGKSSVTYY 191
>gi|403510490|ref|YP_006642128.1| RNA methyltransferase, RsmD family [Nocardiopsis alba ATCC
BAA-2165]
gi|402798475|gb|AFR05885.1| RNA methyltransferase, RsmD family [Nocardiopsis alba ATCC
BAA-2165]
Length = 188
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 15/144 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G A +++ +P G RP + + A F +QS G SL R +DLY+G+G
Sbjct: 1 MTRIIAGAAGGRRITAPDGRTTRPTSDRAREALFSSVQSDLG---SLEGVRVMDLYAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++G+EA+SRG + VE D + V+ N ++++ +R E+ +
Sbjct: 58 AIGLEALSRGAAHALLVEADR-RAAQVVRDN--------IAALRMPGARLVADRVERVLA 108
Query: 228 KDG---PFDYMSVTPPYTAVDYEV 248
+D P+D + PPY D EV
Sbjct: 109 RDNTGDPYDLVVADPPYAVTDEEV 132
>gi|119953003|ref|YP_945212.1| methyltransferase [Borrelia turicatae 91E135]
gi|119861774|gb|AAX17542.1| methyltransferase [Borrelia turicatae 91E135]
Length = 181
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 35/191 (18%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ V GK + K+ PK VRP+M +V+ A F I + + +LD+++GTG
Sbjct: 1 MHVSAGKYKGWKVAFPKIGGVRPVMAIVREAFFSIFLN------QILGSNFLDVFAGTGI 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG + H V+ + + NVLI N E + + + F +AE F+ K
Sbjct: 55 MSLEALSRGANLAHLVDCNKF-SKNVLIKNFE---------VVSEPYKFFFRKAELFLKK 104
Query: 229 -DGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKD 269
D +D++ + PP+ E ++ YP R ++ + L K
Sbjct: 105 SDLFYDFIYLDPPFGYSFKENLLRIISENESLNKDAKIIIHYPSRENLDNNILRLSKYDF 164
Query: 270 RRFGRTHLAIY 280
R++G + L +
Sbjct: 165 RKYGGSKLDFF 175
>gi|342216537|ref|ZP_08709184.1| RNA methyltransferase, RsmD family [Peptoniphilus sp. oral taxon
375 str. F0436]
gi|341587427|gb|EGS30827.1| RNA methyltransferase, RsmD family [Peptoniphilus sp. oral taxon
375 str. F0436]
Length = 178
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 84/153 (54%), Gaps = 17/153 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R KL +PK +D RP + VK F++L++ LR + LD ++GTG+
Sbjct: 1 MRIISGSKRGLKLNAPKSLDTRPTEDRVKENMFNLLEN-------LRDLKVLDAFAGTGA 53
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG S V F E + ++ L N+E L ++++ V T L + ++
Sbjct: 54 LGLEALSRGASYVLFCENNHKTLT-TLKDNIEKVN-LKSYTMYSGDVYTALNKTKE---- 107
Query: 229 DGPFDYMSVTPPYTAVDY--EVVEYPLRTDMLD 259
FD + + PPY ++ +V+ + + D+L+
Sbjct: 108 --KFDLVFLDPPYQDLEAYGKVLNHLVDRDLLN 138
>gi|299134223|ref|ZP_07027416.1| methyltransferase [Afipia sp. 1NLS2]
gi|298590970|gb|EFI51172.1| methyltransferase [Afipia sp. 1NLS2]
Length = 185
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 80/161 (49%), Gaps = 8/161 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + + SP D+RP + ++ + F+IL A PA R LDL++GTG+
Sbjct: 1 MRVVGGRLRGRNIASPASKDIRPTQDRLRESIFNILMHAYENPAV--DARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + F++ + +L N+E G V+ ++ R T L A
Sbjct: 59 LGIEAVSRGATFTLFID-NGAEARALLRNNVEALGLGGVTKVYR-RDATQLGPAHPME-- 114
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKD 269
PF + PPY E LR G LV +++
Sbjct: 115 --PFTLAFLDPPYGKGLAEKALASLRDGQWLVPGALVVVEE 153
>gi|332653473|ref|ZP_08419218.1| RNA methyltransferase, RsmD family [Ruminococcaceae bacterium D16]
gi|332518619|gb|EGJ48222.1| RNA methyltransferase, RsmD family [Ruminococcaceae bacterium D16]
Length = 186
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 87/191 (45%), Gaps = 33/191 (17%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGR-WLDLYSGTG 167
++V+ G AR ++L +GM+ RP + VK A F+I+Q PGR LDL+ GTG
Sbjct: 1 MRVISGTARGRRLGELEGMETRPTTDRVKEALFNIVQFE-------VPGRKILDLFGGTG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+GIEA+SRG FV+ V+ ++ NL+ T + FL+ +
Sbjct: 54 QLGIEALSRGAEHCTFVDQRSDAVT-LIKNNLKVTDLAGKGRVVQGDSLGFLQTCGE--- 109
Query: 228 KDGPFDYMSVTPPYTAVDYE-VVEYPLRTDMLDTCGCLV-----------------KIKD 269
FD + + PPY A E VE D+L G +V + K+
Sbjct: 110 ---QFDVIFLDPPYRADLLERAVEAIAAFDILREHGIMVCESALDKVLPTLNAPYERGKE 166
Query: 270 RRFGRTHLAIY 280
R+G+ L IY
Sbjct: 167 YRYGKIKLTIY 177
>gi|319790156|ref|YP_004151789.1| methyltransferase [Thermovibrio ammonificans HB-1]
gi|317114658|gb|ADU97148.1| methyltransferase [Thermovibrio ammonificans HB-1]
Length = 191
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 13/137 (9%)
Query: 109 LQVLGGKARRKKLLS-PKGMD---VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYS 164
++V+GGK R +++ S PK D +RP E VK + F IL + L ++LDL++
Sbjct: 1 MRVVGGKYRGRRIKSMPKRADTKLLRPTTERVKESVFSILNNY------LEGVKFLDLFA 54
Query: 165 GTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
GTG+VGIEA+SRG S+V FVE D N++ NL + + + E ++
Sbjct: 55 GTGAVGIEALSRGASKVVFVENDRR-FCNLIRENL--CSLRVPPERYEIICGDYTEALKR 111
Query: 225 FVGKDGPFDYMSVTPPY 241
+ FD++ PPY
Sbjct: 112 LAKRGEKFDFIYADPPY 128
>gi|332293433|ref|YP_004432042.1| hypothetical protein Krodi_2799 [Krokinobacter sp. 4H-3-7-5]
gi|332171519|gb|AEE20774.1| Conserved hypothetical protein CHP00095 [Krokinobacter sp.
4H-3-7-5]
Length = 186
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 24/165 (14%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ GK + +++ +PK + VRP ++ K A F+IL+S + R LDL++GTG
Sbjct: 1 MTRIISGKYKGRRIAAPKKLPVRPTTDMAKEALFNILRSN----YHMSQLRVLDLFAGTG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVS--NVLIPNLEWTGFLDVSSIHTVRVETF--LERAE 223
++ E SRG ++ V+ + V N E+ SI T++ + F LERA
Sbjct: 57 NISYEFASRGSDQITAVDANYGCVQFINKTAEEFEF-------SIQTIKSDVFKYLERAR 109
Query: 224 QFVGKDGPFDYMSVTPPY--TAVDYE-VVEYPLRTDMLDTCGCLV 265
G +D + PPY D+E + + ++LD G L+
Sbjct: 110 ------GTYDIIFADPPYDIDIKDFEKIATLVFKQNLLDQDGTLI 148
>gi|373494916|ref|ZP_09585511.1| RsmD family RNA methyltransferase [Eubacterium infirmum F0142]
gi|371967052|gb|EHO84529.1| RsmD family RNA methyltransferase [Eubacterium infirmum F0142]
Length = 193
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 94/190 (49%), Gaps = 31/190 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R +KL +P G ++RP + VK + F+IL + +DL++GTG+
Sbjct: 1 MRIITGKYRGRKLETPFGNEIRPTSDKVKESIFNILM------CDIEDAVCVDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + F + + + +++ N+++ + S + L+R ++ V
Sbjct: 55 LGLEALSRGALKCWFCDNERNSI-DIIKRNIKYCKADNESIVLAGDYRKALKRIDEKV-- 111
Query: 229 DGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDR 270
D + + PPY A YE V E+ TD+ + G + K +
Sbjct: 112 ----DIIFIDPPYHAGLYEKAVEQIDLLDLLTDVGIIVAEHEKMTDLPEHIGGMKLFKHK 167
Query: 271 RFGRTHLAIY 280
++G+T L++Y
Sbjct: 168 KYGKTCLSLY 177
>gi|330991269|ref|ZP_08315220.1| Ribosomal RNA small subunit methyltransferase D [Gluconacetobacter
sp. SXCC-1]
gi|329761288|gb|EGG77781.1| Ribosomal RNA small subunit methyltransferase D [Gluconacetobacter
sp. SXCC-1]
Length = 191
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 9/136 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSA--GGCPASLRPGRWLDLYSGT 166
++++ G+ R + L +P G RP + V+ A FD L A G +LR R LD ++GT
Sbjct: 1 MRIIAGECRGRTLHAPAGQTTRPTADRVRQALFDTLAHAPWAGLD-TLRGARVLDGFAGT 59
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G++G+EA+SRG + FVE D + L N+ G S TVR L
Sbjct: 60 GALGLEALSRGAASACFVERDRAAL-RALRENIAACGMQGRS---TVRALDMLRLPP--A 113
Query: 227 GKDGPFDYMSVTPPYT 242
G GP D + + PPY
Sbjct: 114 GAAGPVDLVFLDPPYN 129
>gi|282848932|ref|ZP_06258322.1| RNA methyltransferase, RsmD family [Veillonella parvula ATCC 17745]
gi|294791779|ref|ZP_06756927.1| RNA methyltransferase, RsmD family [Veillonella sp. 6_1_27]
gi|282581437|gb|EFB86830.1| RNA methyltransferase, RsmD family [Veillonella parvula ATCC 17745]
gi|294457009|gb|EFG25371.1| RNA methyltransferase, RsmD family [Veillonella sp. 6_1_27]
Length = 183
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 95/193 (49%), Gaps = 38/193 (19%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG A+ + +PKG+D RP ++ V+ + F++L + G + + LD++SGTG+
Sbjct: 1 MRIIGGTAKGHAIKAPKGLDTRPTLDRVRESVFNVLANKGIFGSDI-----LDIFSGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--- 225
V IEA+SRG + H V +D + +++ N + D R+E + Q
Sbjct: 56 VAIEALSRGAA--HAVAVD-FKTGKLILENAKHCRVDD-------RLEIIPRKLSQLKNY 105
Query: 226 -VGKDGPFDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGCLVK----------------I 267
VG+ FDY+ PPY + ++ + D+L G L+ I
Sbjct: 106 IVGRQ--FDYIFSDPPYENGFIQDTIDLVVNYDLLKPEGVLLLEHHKDEVFTLPESWECI 163
Query: 268 KDRRFGRTHLAIY 280
K+++FG T ++ +
Sbjct: 164 KEQKFGYTLVSYF 176
>gi|313678727|ref|YP_004056467.1| methyltransferase [Mycoplasma bovis PG45]
gi|312950811|gb|ADR25406.1| putative methyltransferase [Mycoplasma bovis PG45]
Length = 182
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 90/192 (46%), Gaps = 39/192 (20%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++V+ GK R + L PK D+RP M+ V+ A F + LDL++G+G
Sbjct: 1 MIRVISGKYRHRHLNWPKSKDIRPTMDKVREAIF------SSIRMQIEGKIVLDLFAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV- 226
S+ IE++S + VE D V + + +++S+ ++ F A F+
Sbjct: 55 SMAIESVSNYAMKAVAVEKDKEAVKVI---------YENINSLQINNIDVFNMNALSFLK 105
Query: 227 GKDG-PFDYMSVTPPYTAVDYEVVEYPLR----TDMLDTCGCLV-------KI------- 267
K G FDY+ V PPY +Y+++ LR + L T G ++ KI
Sbjct: 106 SKTGRIFDYIFVDPPYA--EYDLLNECLRLIKTNNFLSTNGLIIVETNNNNKIEIPQGLM 163
Query: 268 --KDRRFGRTHL 277
K++++G+ H+
Sbjct: 164 IQKNKKYGKVHI 175
>gi|405980394|ref|ZP_11038733.1| RsmD family RNA methyltransferase [Actinomyces turicensis
ACS-279-V-Col4]
gi|404390387|gb|EJZ85456.1| RsmD family RNA methyltransferase [Actinomyces turicensis
ACS-279-V-Col4]
Length = 193
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 11/144 (7%)
Query: 108 LLQVLGGKARRKKLLSP-KGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ G A+ + L P KG RP E V+ A F L+ L LDLY+G+
Sbjct: 1 MTRIVAGSAKGRVLKVPAKG--TRPTSERVREALFSRLEHMNVVENCLV----LDLYAGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G++G+EA SRG S V VE + ++ N+ TG + +HT TFL RA F
Sbjct: 55 GALGLEAASRGASRVDLVEKSA-PTARIIAHNIRATGL--KARVHTASATTFL-RARDFE 110
Query: 227 GKDGPFDYMSVTPPYTAVDYEVVE 250
G FD + + PPY + +V E
Sbjct: 111 TLSGEFDLVLLDPPYDVSEEDVAE 134
>gi|302525045|ref|ZP_07277387.1| RsmD family RNA methyltransferase [Streptomyces sp. AA4]
gi|302433940|gb|EFL05756.1| RsmD family RNA methyltransferase [Streptomyces sp. AA4]
Length = 188
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 97/209 (46%), Gaps = 46/209 (22%)
Query: 108 LLQVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ GKA ++L + PKG RP E V+ A F+ L+ AG L R LDLY+G+
Sbjct: 1 MTRIVAGKAGGRRLKVPPKG--TRPTSERVREALFNALEVAG----ELDGARVLDLYAGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G++G+EA+SRG ++ FVE D ++VL N+ D+ TVR + E V
Sbjct: 55 GALGLEALSRGAADAWFVEADR-RAADVLRGNVA-----DLRLGGTVRA----GQVETVV 104
Query: 227 GKDGP--FDYMSVTPPYTAVDYE---------------------VVEYPLRTDMLDTCGC 263
P FD + PPY AVD V+E R D
Sbjct: 105 AAPAPVQFDVVLADPPY-AVDAASLGSVLASLHSGGWLAEGALTVIERAARDGAPDWPST 163
Query: 264 LVKIKDRRFGRTHLAIYGPDWAQKKRKSE 292
++D+R+G T A+Y WA+ SE
Sbjct: 164 FKPLRDKRYGDT--ALY---WAEYDSSSE 187
>gi|347531756|ref|YP_004838519.1| adenine-specific DNA-methyltransferase [Roseburia hominis A2-183]
gi|345501904|gb|AEN96587.1| site-specific DNA-methyltransferase (adenine-specific) [Roseburia
hominis A2-183]
Length = 183
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 82/159 (51%), Gaps = 14/159 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW-LDLYSGTG 167
++++ G AR L +P+GMD RP + +K F+I+Q PG + LDL++G+G
Sbjct: 1 MRIIAGTARSLPLKAPEGMDTRPTTDRIKETLFNIIQDE-------VPGAYFLDLFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+G+EA+SRG FV+ + + + N+ +T F + ++ V + L E G
Sbjct: 54 QMGLEAVSRGARYAVFVD-NGKKPAACIEENIRFTKFEHQTKLYPTEVLSALRAME---G 109
Query: 228 KDGPFDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGCLV 265
K FD + + PPY ++ EV+ Y + +L L+
Sbjct: 110 K-YQFDLIFMDPPYRKGMEQEVLRYLAGSSLLKEDTVLI 147
>gi|384135009|ref|YP_005517723.1| methyltransferase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339289094|gb|AEJ43204.1| methyltransferase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length = 184
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 26/187 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ R L SP+ VRP + VK + F+++ P L G +DL++GTGS
Sbjct: 1 MRVIAGRWRGILLESPRSQAVRPTTDRVKESMFNLI------PHRLE-GLVIDLFAGTGS 53
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG S FV+ DP + ++ NL+ G +S V V + +F
Sbjct: 54 LGIEALSRGASRAIFVDKDP-RSARLVRRNLDRVG---AASQAEVWVLDWARALRRFESS 109
Query: 229 DGPFDYMSVTPPYTAVDY---------------EVVEYPLRTDMLDTCGCLVKIKDRRFG 273
Y+ V PPY A + V E P D+ + G V K R++G
Sbjct: 110 GDVATYVFVDPPYHADLWIPVLLALPAARVSGAVVCEAPASLDLPEQVGDFVLQKSRQYG 169
Query: 274 RTHLAIY 280
+ IY
Sbjct: 170 DIAVRIY 176
>gi|333371201|ref|ZP_08463163.1| ribosomal RNA small subunit methyltransferase D [Desmospora sp.
8437]
gi|332976645|gb|EGK13486.1| ribosomal RNA small subunit methyltransferase D [Desmospora sp.
8437]
Length = 199
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 11/158 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKA+ ++L + GM VRP + V+ + F I+ G LDL++G+GS
Sbjct: 1 MRIIAGKAKGRRLKTVPGMKVRPTTDRVRESLFQIIGP------YFEGGSVLDLFAGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+E +SRG FV+ P V V NL+ GF D + ++ L +
Sbjct: 55 LGLETLSRGAERAVFVDHSPASVETVR-KNLQVAGFADRAEVYRRDARAAL---RILARR 110
Query: 229 DGPFDYMSVTPPYTAVDY-EVVEYPLRTDMLDTCGCLV 265
F Y+ + PPY E++ Y +L+ G L+
Sbjct: 111 KLSFRYIFLDPPYRETFLPELLTYISEHGLLEPRGVLM 148
>gi|297717850|gb|ADI50068.1| putative methyltransferase [Candidatus Odyssella thessalonicensis
L13]
Length = 193
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 28/185 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R +KL P RP + ++ A F+IL L+ LD ++G+G+
Sbjct: 1 MRIVGGKNRGRKLALPDQAYTRPTTDRIREAIFNIL--CHHPEIDLQGAYVLDAFAGSGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT----VRVETFLERAEQ 224
+G+EA+SRG + V FVE P ++N+L NL+ F + +H +R RA
Sbjct: 59 LGLEALSRGATNVTFVEAHPK-IANILQQNLKL--FPESDQLHLIISDIRKLKKAARAMD 115
Query: 225 FVGKDGPF----DYMSVTPPY----------TAVDYEVVEYPLRTDMLDTCGCLVKIKDR 270
V D P+ ++ ++ PY T + YE ++TD+ C + +R
Sbjct: 116 LVFLDPPYGKGLEFQAL--PYLVEQNWINSDTVIVYET---EVQTDIAPLLACTAVLDER 170
Query: 271 RFGRT 275
R+G T
Sbjct: 171 RYGGT 175
>gi|86609190|ref|YP_477952.1| methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557732|gb|ABD02689.1| putative methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 183
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 76/183 (41%), Gaps = 34/183 (18%)
Query: 118 RKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRPGRWLDLYSGTGSVGIEAISR 176
++ L +P G+ RP V+ A F+ILQ GC RWLDL G G+VG EA+ +
Sbjct: 8 KRALQTPAGLGTRPTPGRVRQALFNILQGQVEGC-------RWLDLCCGAGTVGAEALCQ 60
Query: 177 GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS-SIHTVRVET--FLERAEQFVGKDGPFD 233
G + V +E+ I W + S ++ + L R PFD
Sbjct: 61 GAAFVAGIEI---AAPACRIIRANWAKVAQLGQSFQVIQGDARKLLSRGLNLE----PFD 113
Query: 234 YMSVTPPYTAVDYE----------------VVEYPLRTDMLDTCGCLVKIKDRRFGRTHL 277
Y+ PPY A Y +VE+ + D G L++ R +G+T L
Sbjct: 114 YVYFAPPYEAGLYAPLLPLIPPLLKPGGTLIVEHRSGQKLPDQVGSLLRFDQRTYGQTAL 173
Query: 278 AIY 280
A Y
Sbjct: 174 AFY 176
>gi|403069300|ref|ZP_10910632.1| hypothetical protein ONdio_06865 [Oceanobacillus sp. Ndiop]
Length = 184
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 11/157 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + ++L + G RP + VK A F ++ G G LDL++G+GS
Sbjct: 1 MRVIAGDLKGRQLKAVPGKSTRPTTDKVKEAVFQVMGPFFGG------GMVLDLFAGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ P V + NL+ S + L+ A + +
Sbjct: 55 LGIEALSRGMEYGVFVDKHPKAVHTIY-ENLQSMKLEQKSEVFRAEAHRALKAAAK---R 110
Query: 229 DGPFDYMSVTPPYTAVDY-EVVEYPLRTDMLDTCGCL 264
+ FD + + PPY VDY E++E L+ +++ G +
Sbjct: 111 ELIFDLILLDPPYGKVDYEEIIEDILKLHLINGGGTI 147
>gi|294793640|ref|ZP_06758777.1| RNA methyltransferase, RsmD family [Veillonella sp. 3_1_44]
gi|294455210|gb|EFG23582.1| RNA methyltransferase, RsmD family [Veillonella sp. 3_1_44]
Length = 183
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 95/193 (49%), Gaps = 38/193 (19%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG A+ + +PKG+D RP ++ V+ + F++L + G + + LD++SGTG+
Sbjct: 1 MRIIGGTAKGHAIKAPKGLDTRPTLDRVRESVFNVLANRGIFGSDI-----LDIFSGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--- 225
V IEA+SRG + H V +D + +++ N + D R+E + Q
Sbjct: 56 VAIEALSRGAA--HAVAVD-FKTGKLILENAKHCRVDD-------RLEIIPRKLSQLKNY 105
Query: 226 -VGKDGPFDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGCLVK----------------I 267
VG+ FDY+ PPY + ++ + D+L G L+ I
Sbjct: 106 IVGRQ--FDYIFSDPPYENGFIQDTIDLVVNYDLLKPEGVLLLEHHKDEVFTLPESWECI 163
Query: 268 KDRRFGRTHLAIY 280
K+++FG T ++ +
Sbjct: 164 KEQKFGYTLVSYF 176
>gi|373496651|ref|ZP_09587197.1| RsmD family RNA methyltransferase [Fusobacterium sp. 12_1B]
gi|371965540|gb|EHO83040.1| RsmD family RNA methyltransferase [Fusobacterium sp. 12_1B]
Length = 182
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ K++ S KG D RP + +K + F I+ A P S+ +LDL+SG+GS
Sbjct: 1 MKIIAGDAKNKRIKSRKGTDTRPTLGSMKESLFSII--APYVPDSV----FLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG +E D + +I N+ G+ D + + RA + +G+
Sbjct: 55 ISLEALSRGAKRAVMIEKDTEAL-KYIIENVNTLGYEDRCRAY----KNDALRAIEILGR 109
Query: 229 DG-PFDYMSVTPPY 241
G FD + + PPY
Sbjct: 110 KGEKFDIIFMDPPY 123
>gi|339320706|ref|YP_004683228.1| DNA methylase [Mycoplasma bovis Hubei-1]
gi|392429780|ref|YP_006470825.1| DNA methylase [Mycoplasma bovis HB0801]
gi|338226831|gb|AEI89893.1| DNA methylase [Mycoplasma bovis Hubei-1]
gi|392051189|gb|AFM51564.1| DNA methylase [Mycoplasma bovis HB0801]
Length = 182
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 90/192 (46%), Gaps = 39/192 (20%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++V+ GK R + L PK D+RP M+ V+ A F + LDL++G+G
Sbjct: 1 MIRVISGKYRHRHLNWPKSKDIRPTMDKVREAIF------SSIRMQIEGKIVLDLFAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV- 226
S+ IE++S + VE D + + + +++S+ ++ F A F+
Sbjct: 55 SMAIESVSNYAMKAVAVEKDKEAIKVI---------YENINSLQINNIDVFNMNALSFLK 105
Query: 227 GKDG-PFDYMSVTPPYTAVDYEVVEYPLR----TDMLDTCGCLV-------KI------- 267
K G FDY+ V PPY +Y+++ LR + L T G ++ KI
Sbjct: 106 SKTGRIFDYIFVDPPYA--EYDLLNECLRLIKTNNFLSTNGLIIVETNNNNKIEIPQGLM 163
Query: 268 --KDRRFGRTHL 277
K++++G+ H+
Sbjct: 164 IQKNKKYGKVHI 175
>gi|118590703|ref|ZP_01548104.1| hypothetical protein SIAM614_06033 [Stappia aggregata IAM 12614]
gi|118436679|gb|EAV43319.1| hypothetical protein SIAM614_06033 [Stappia aggregata IAM 12614]
Length = 185
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 8/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ + L +PK D RP + ++ F+IL A G L R LDL++GTG+
Sbjct: 1 MRIVAGRFKGTALAAPKSHDTRPTSDRLRETIFNIL--AHGLDVDLEGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EAISRG F+E + ++ N+E G + I R T L A G
Sbjct: 59 LGFEAISRGARHCTFIE-EGAEARGIIRRNMETLGLNGAAKIFR-RDATRLGSA----GT 112
Query: 229 DGPFDYMSVTPPY 241
PFD + PPY
Sbjct: 113 IEPFDLVFADPPY 125
>gi|386842766|ref|YP_006247824.1| DNA methylase [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|374103067|gb|AEY91951.1| DNA methylase [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|451796058|gb|AGF66107.1| DNA methylase [Streptomyces hygroscopicus subsp. jinggangensis
TL01]
Length = 195
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 8/146 (5%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGAAGGRRLSVPPGTGTRPTSDRAREGLFSTWQSLLGGP--LDGERALDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG V VE D + ++ N++ G L + + T + E + +A
Sbjct: 59 AVGLEALSRGAGHVLLVEADA-RAARIVRENVKNLG-LPGAEVRTGKAEQVISQA----A 112
Query: 228 KDGPFDYMSVTPPYTAVDYEVVEYPL 253
+ P+D + + PPY D ++ E L
Sbjct: 113 PEEPYDLVFLDPPYAVSDDDLREILL 138
>gi|319892121|ref|YP_004148996.1| ribosomal RNA small subunit methyltransferase D [Staphylococcus
pseudintermedius HKU10-03]
gi|386319597|ref|YP_006015760.1| putative methyltransferase [Staphylococcus pseudintermedius ED99]
gi|317161817|gb|ADV05360.1| Ribosomal RNA small subunit methyltransferase D [Staphylococcus
pseudintermedius HKU10-03]
gi|323464768|gb|ADX76921.1| putative methyltransferase [Staphylococcus pseudintermedius ED99]
Length = 183
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 82/159 (51%), Gaps = 15/159 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L + +G + RP M+ VK F+ L + G LDL++G+GS
Sbjct: 1 MRVIAGKHKSKSLETLEGRNTRPTMDKVKEGIFNSLHTV--------EGLGLDLFAGSGS 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL+ + ++ + L+ + +
Sbjct: 53 LGIEALSRGMDKVIFVDQNIRAVK-VIQHNLKKLDLTHQAEVYKNNADRALKALNK---R 108
Query: 229 DGPFDYMSVTPPYTA--VDYEVVEYPLRTDMLDTCGCLV 265
+ FD + + PPY +D E ++ + D+L G +V
Sbjct: 109 EIQFDLIFLDPPYEKGLID-EALKSIHQFDLLKQNGIIV 146
>gi|302342192|ref|YP_003806721.1| methyltransferase [Desulfarculus baarsii DSM 2075]
gi|301638805|gb|ADK84127.1| methyltransferase [Desulfarculus baarsii DSM 2075]
Length = 189
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+L+V GG+ R + L +P G D RP V+ A F+IL GG + R DL++G+G
Sbjct: 1 MLKVCGGELRGRALKAPAGHDTRPTAAKVRQALFNIL---GGRTSG---ARVCDLFAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++G+EA+SRG + FVE +V ++ NL G + A Q +
Sbjct: 55 ALGVEALSRGAAWCLFVERR-RLVCRLIAQNLAGLGLEARGRVLMADAAM----ASQRLL 109
Query: 228 KDGPFDYMSVTPPY 241
+ GPFD PPY
Sbjct: 110 EQGPFDLALADPPY 123
>gi|284048740|ref|YP_003399079.1| methyltransferase [Acidaminococcus fermentans DSM 20731]
gi|283952961|gb|ADB47764.1| methyltransferase [Acidaminococcus fermentans DSM 20731]
Length = 184
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 81/158 (51%), Gaps = 11/158 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR KL++PK VRP + VK A F+I+QS P S LD ++GTG+
Sbjct: 1 MRIITGKARGLKLVTPKNYLVRPTADRVKEALFNIIQSR--IPGSTV----LDAFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG +V + + + V + V+ IHT V A+Q GK
Sbjct: 55 LGLEAWSRGAEQVVYFDKSRESLKLVKANVEKARAGEQVNMIHTDAVNGLAMMAQQ--GK 112
Query: 229 DGPFDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLV 265
FD + PPY ++ +VVE + +L G LV
Sbjct: 113 --TFDLIFSDPPYNKGLNRKVVEALEKWPVLKPGGLLV 148
>gi|414168722|ref|ZP_11424685.1| RsmD family RNA methyltransferase [Afipia clevelandensis ATCC
49720]
gi|410887458|gb|EKS35268.1| RsmD family RNA methyltransferase [Afipia clevelandensis ATCC
49720]
Length = 184
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 8/161 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + + SP ++RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLRGRNIASPSSNEIRPTQDRLRESLFNILMHAYDNP--IDGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FV+ + +L N+E G V+ ++ R T L A
Sbjct: 59 LGIEAVSRGAAFTLFVD-NGAEARALLRNNVEALGLGGVTKVYR-RDATNLGPAYPVE-- 114
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKD 269
PF + + PPY E LR T G LV +++
Sbjct: 115 --PFSLVFLDPPYGRGLAEKAVISLRDGRWLTPGALVVVEE 153
>gi|417915994|ref|ZP_12559587.1| RNA methyltransferase, RsmD family [Streptococcus mitis bv. 2 str.
SK95]
gi|342831617|gb|EGU65931.1| RNA methyltransferase, RsmD family [Streptococcus mitis bv. 2 str.
SK95]
Length = 179
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 13/134 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYRGRPLKTLEGKTTRPTSDKVRGAIFNMMGP------YFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRK-AQAIIAENIQMTK--EVSKFQLLKMEA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYT 242
GPFD + + PPY
Sbjct: 108 KGPFDLIFLDPPYA 121
>gi|325956530|ref|YP_004291942.1| methyltransferase [Lactobacillus acidophilus 30SC]
gi|325333095|gb|ADZ07003.1| Methyltransferase [Lactobacillus acidophilus 30SC]
Length = 183
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 10/134 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L + K RP + VK + F+ L G LDLY+G+G+
Sbjct: 1 MRIISGKYAKRNLFTLKSNRTRPTSDKVKESLFNSLGQF------FNGGNVLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRGC V+++ S ++ N+ T + I+ +R L + F K
Sbjct: 55 LGIEAVSRGCDHASLVDINHAACS-IIKKNVALTKEENRFDIYNIRSSAAL---KLFAEK 110
Query: 229 DGPFDYMSVTPPYT 242
+ FD + + PPY
Sbjct: 111 ELKFDLVFLDPPYA 124
>gi|408529031|emb|CCK27205.1| RsmD family RNA methyltransferase [Streptomyces davawensis JCM
4913]
Length = 195
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 73/162 (45%), Gaps = 17/162 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGAAGGRRLAVPPGNGTRPTSDRAREGLFSTWQSLLGGP--LDGERILDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG S VE D + +V S+ E +AEQ +
Sbjct: 59 AVGLEALSRGASHTLLVEADARAARTIR---------ENVKSLGLPGAEVRSGKAEQVIQ 109
Query: 228 KDG---PFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVK 266
P+D + + PPY D ++ E L L T G L K
Sbjct: 110 TPAPTEPYDLVFLDPPYAVTDDDLREILL---TLRTQGWLAK 148
>gi|312111788|ref|YP_003990104.1| methyltransferase [Geobacillus sp. Y4.1MC1]
gi|336236171|ref|YP_004588787.1| methyltransferase [Geobacillus thermoglucosidasius C56-YS93]
gi|311216889|gb|ADP75493.1| methyltransferase [Geobacillus sp. Y4.1MC1]
gi|335363026|gb|AEH48706.1| methyltransferase [Geobacillus thermoglucosidasius C56-YS93]
Length = 196
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + ++L + GM RP + VK A F+++ G LDL+ G+G
Sbjct: 8 MRVISGKCKGRRLQAVPGMSTRPTTDKVKEAIFNMI------GPYFSGGMGLDLFGGSGG 61
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG V FV+ D V + N+E + + I+ ERA + + K
Sbjct: 62 LGIEALSRGLDRVIFVDHDAKAVQTIK-KNVETCRLSEQAEIY----RNDAERALKAIVK 116
Query: 229 DG-PFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKD 269
G F + + PPY + V E+ D+ + G LVK K
Sbjct: 117 RGLRFHLIFLDPPYKEQKLQSILSFIDEHGLLEEDGAVVAEHSSEMDLAEHIGRLVKWKH 176
Query: 270 RRFGRTHLAIY 280
+G T ++IY
Sbjct: 177 EVYGITAISIY 187
>gi|148241834|ref|YP_001226991.1| N6-adenine-specific methylase [Synechococcus sp. RCC307]
gi|147850144|emb|CAK27638.1| N6-adenine-specific methylase [Synechococcus sp. RCC307]
Length = 182
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 86/179 (48%), Gaps = 37/179 (20%)
Query: 119 KKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTGSVGIEAISRG 177
+KL SP+G++ RP +V+ A +IL A+ PG RWLDL SG+G++ EA+ +G
Sbjct: 9 QKLHSPEGLEARPTTGLVRQAVMNIL-------AAELPGCRWLDLCSGSGAMACEALLQG 61
Query: 178 CSEVHFVEMDPWVVS----NVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233
V VE +P + + N W G S+ VE +L+R+ PFD
Sbjct: 62 ALWVQAVERNPKIAAAARRNFQGLGERWQG---TWSLEISTVERWLQRS-----CPEPFD 113
Query: 234 YMSVTPPYTAVDYE-VVEYP-----LRTD--MLDTCG---------CLVKIKDRRFGRT 275
+ PPY A Y +VE L+ D +L CG +IK+RR+GR+
Sbjct: 114 LIYADPPYAAGLYTPIVELISAGGWLKRDGQLLMECGRDAMPLPPKGWKQIKERRYGRS 172
>gi|423720704|ref|ZP_17694886.1| RNA methyltransferase, RsmD family [Geobacillus thermoglucosidans
TNO-09.020]
gi|383366057|gb|EID43348.1| RNA methyltransferase, RsmD family [Geobacillus thermoglucosidans
TNO-09.020]
Length = 189
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + ++L + GM RP + VK A F+++ G LDL+ G+G
Sbjct: 1 MRVISGKCKGRRLQAVPGMSTRPTTDKVKEAIFNMI------GPYFSGGMGLDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG V FV+ D V + N+E + + I+ ERA + + K
Sbjct: 55 LGIEALSRGLDRVIFVDHDAKAVQTIK-KNVETCRLSEQAEIY----RNDAERALKAIVK 109
Query: 229 DG-PFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKD 269
G F + + PPY + V E+ D+ + G LVK K
Sbjct: 110 RGLRFHLIFLDPPYKEQKLQSILSFIDEHGLLEEDGAVVAEHSSEMDLAEHIGRLVKWKH 169
Query: 270 RRFGRTHLAIY 280
+G T ++IY
Sbjct: 170 EVYGITAISIY 180
>gi|338971991|ref|ZP_08627370.1| Methyltransferase [Bradyrhizobiaceae bacterium SG-6C]
gi|338234885|gb|EGP09996.1| Methyltransferase [Bradyrhizobiaceae bacterium SG-6C]
Length = 184
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 8/161 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + + SP ++RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLRGRNIASPSSNEIRPTQDRLRESLFNILMHAYDNP--IDGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FV+ + +L N+E G V+ ++ R T L A
Sbjct: 59 LGIEAVSRGAAFTLFVD-NGAEARALLRNNVEALGLGGVTKVYR-RDATSLGPAYPVE-- 114
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKD 269
PF + + PPY E LR T G LV +++
Sbjct: 115 --PFSLVFLDPPYGRGLAEKAVISLRDGRWLTPGALVVVEE 153
>gi|419719315|ref|ZP_14246600.1| RNA methyltransferase, RsmD family [Lachnoanaerobaculum saburreum
F0468]
gi|383304509|gb|EIC95909.1| RNA methyltransferase, RsmD family [Lachnoanaerobaculum saburreum
F0468]
Length = 184
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 93/193 (48%), Gaps = 17/193 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A L +PKG RP + VK F+++ + L +LD+++G+G
Sbjct: 1 MRVISGIAGSLILKTPKGNFTRPTTDKVKETLFNMIAN------DLYNATFLDMFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + +F ++D V + NL T D + + E+ LE+ + K
Sbjct: 55 IGIEALSRGAKKAYFCDIDREAVE-CIKYNLSHTKLSDRAVVLKGGFESNLEKLKSLGEK 113
Query: 229 DGPFDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDW--- 284
FD + + PPY + + ++ L + ++D ++ +D + HL DW
Sbjct: 114 ---FDIVFLDPPYQKGFEDKCLDILLNSTLIDEYTLIIIEEDFKTDTAHLE---KDWDII 167
Query: 285 AQKKRKSEKKIPI 297
K+ KS K I I
Sbjct: 168 KVKEYKSNKHIFI 180
>gi|315651228|ref|ZP_07904258.1| ribosomal RNA small subunit methyltransferase D
[Lachnoanaerobaculum saburreum DSM 3986]
gi|315486524|gb|EFU76876.1| ribosomal RNA small subunit methyltransferase D
[Lachnoanaerobaculum saburreum DSM 3986]
Length = 184
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 93/193 (48%), Gaps = 17/193 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A L +PKG RP + VK F+++ + L +LD+++G+G
Sbjct: 1 MRVISGIAGSLILKTPKGNFTRPTTDKVKETLFNMIAN------DLYDATFLDMFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + +F ++D V + NL T D + + E+ LE+ + K
Sbjct: 55 IGIEALSRGAKKAYFCDIDREAVE-CIKYNLSHTKLSDRAVVLKGGFESNLEKLKSLGEK 113
Query: 229 DGPFDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDW--- 284
FD + + PPY + + ++ L + ++D ++ +D + HL DW
Sbjct: 114 ---FDIVFLDPPYQKGFEDKCLDILLNSTLIDEYTLIIIEEDFKTDTAHLE---KDWDII 167
Query: 285 AQKKRKSEKKIPI 297
K+ KS K I I
Sbjct: 168 KVKEYKSNKHIFI 180
>gi|302542238|ref|ZP_07294580.1| RsmD family RNA methyltransferase [Streptomyces hygroscopicus ATCC
53653]
gi|302459856|gb|EFL22949.1| RsmD family RNA methyltransferase [Streptomyces himastatinicus ATCC
53653]
Length = 195
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 16/150 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F +S G SL R LDLY G+G
Sbjct: 1 MTRVIAGAAGGRRLAVPPGNGTRPTSDRAREGLFSTWESLLG---SLSGARVLDLYGGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG + V VE DP + +V ++ E +AE +G
Sbjct: 58 AVGLEALSRGAAHVLLVESDPRAARTIRE---------NVRALGLPGAELRTGKAEATIG 108
Query: 228 KD----GPFDYMSVTPPYTAVDYEVVEYPL 253
GP+D + + PPY D ++ E L
Sbjct: 109 GQPPATGPYDVVFLDPPYVVSDDDLREILL 138
>gi|182417257|ref|ZP_02948610.1| putative methyltransferase [Clostridium butyricum 5521]
gi|237668100|ref|ZP_04528084.1| RNA methyltransferase, RsmD family [Clostridium butyricum E4 str.
BoNT E BL5262]
gi|182378903|gb|EDT76416.1| putative methyltransferase [Clostridium butyricum 5521]
gi|237656448|gb|EEP54004.1| RNA methyltransferase, RsmD family [Clostridium butyricum E4 str.
BoNT E BL5262]
Length = 185
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 71/133 (53%), Gaps = 10/133 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR KL+ P M+ RP ++ VK A F +Q + G +D+++GTGS
Sbjct: 1 MRIIAGKARGHKLIPPATMETRPTLDRVKEAMFSSIQ------LYIPEGTIVDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG SEV+ + + +L N++ F D+ ++ + ++ + K
Sbjct: 55 LGLEAASRGASEVYLFD-KSEITFPLLQENVKNLKFEDIC--FPIKTDAYI-GLKNLAQK 110
Query: 229 DGPFDYMSVTPPY 241
F+ + + PPY
Sbjct: 111 GKQFNIIFIDPPY 123
>gi|237833115|ref|XP_002365855.1| hypothetical protein TGME49_072210 [Toxoplasma gondii ME49]
gi|211963519|gb|EEA98714.1| hypothetical protein TGME49_072210 [Toxoplasma gondii ME49]
gi|221508825|gb|EEE34394.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 364
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 8/122 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAG--GCPASLRPGRWLDLYSGT 166
L V+GG+ ++L+ P+ DVRPMM VK A F +LQ G GC + R LDL+SG+
Sbjct: 42 LHVVGGRLGGRRLMMPRRGDVRPMMAKVKEALFSMLQRMGVLGCVGE-QQLRVLDLFSGS 100
Query: 167 GSVGIEAISRGCSEVHFVE--MDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
G++ +EA SRG + +D + V N+++ G + S I VE L E+
Sbjct: 101 GALSVEAFSRGAQWALLTDSSLDSCEAATV---NMQYCGVAERSYIVRASVEELLLVPER 157
Query: 225 FV 226
++
Sbjct: 158 YM 159
>gi|51598467|ref|YP_072655.1| hypothetical protein BG0208 [Borrelia garinii PBi]
gi|51573038|gb|AAU07063.1| conserved hypothetical protein [Borrelia garinii PBi]
Length = 179
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 18/136 (13%)
Query: 109 LQVLGGKARRKKLLSP-KGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ V GK + +K+L P K VRP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 1 MYVSSGKYKGRKILFPNKTGAVRPVMSLVREAFFSIIFK------DIINSKFLDVFAGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ +EA+SRG S H VE + L+ N + V + + F +RAE F+G
Sbjct: 55 IMSVEALSRGASLAHLVECNKK-TKITLVKNFSF-----VEEFY----KFFFQRAEDFLG 104
Query: 228 -KDGPFDYMSVTPPYT 242
KD +D++ + PP+
Sbjct: 105 KKDLFYDFIYLDPPFN 120
>gi|338811257|ref|ZP_08623482.1| methyltransferase [Acetonema longum DSM 6540]
gi|337276726|gb|EGO65138.1| methyltransferase [Acetonema longum DSM 6540]
Length = 184
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 14/136 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ L +P+GM +RP + VK + F IL + + LDL+SGTG+
Sbjct: 1 MRVITGTAKGTILKAPEGMAIRPTTDRVKESVFAILGE------RIVNAKVLDLFSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLI-PNLEWTGFLDVSS-IHTVRVETFLERAEQFV 226
+GIE++SRG +V FV D VS LI NL+ T + + + + +ER F
Sbjct: 55 LGIESLSRGAQQVVFV--DQSAVSLRLIKENLQRTRMTEKEHLVLRLNISGGMERVMSF- 111
Query: 227 GKDGPFDYMSVTPPYT 242
G FD + PPY
Sbjct: 112 ---GGFDLIFCDPPYN 124
>gi|115522954|ref|YP_779865.1| putative methyltransferase [Rhodopseudomonas palustris BisA53]
gi|115516901|gb|ABJ04885.1| putative methyltransferase [Rhodopseudomonas palustris BisA53]
Length = 203
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 8/134 (5%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
L++V+GG+ + + + SP +RP + ++ A F+IL A G P + R +DL++GTG
Sbjct: 19 LMRVVGGRLKGRNIASPSSQAIRPTQDRLREALFNILAHAYGNP--MLDARVIDLFAGTG 76
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG S FV+ + +L N+E G + ++ R T L A
Sbjct: 77 ALGIEAVSRGASFALFVD-NGAEARALLRQNVEALGLGGTTKVYR-RDATNLGPAHPIE- 133
Query: 228 KDGPFDYMSVTPPY 241
PF PPY
Sbjct: 134 ---PFALAFCDPPY 144
>gi|221488319|gb|EEE26533.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 364
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 8/122 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAG--GCPASLRPGRWLDLYSGT 166
L V+GG+ ++L+ P+ DVRPMM VK A F +LQ G GC + R LDL+SG+
Sbjct: 42 LHVVGGRLGGRRLMMPRRGDVRPMMAKVKEALFSMLQRMGVLGCVGE-QQLRVLDLFSGS 100
Query: 167 GSVGIEAISRGCSEVHFVE--MDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
G++ +EA SRG + +D + V N+++ G + S I VE L E+
Sbjct: 101 GALSVEAFSRGAQWALLTDSSLDSCEAATV---NMQYCGVAERSYIVRASVEELLLVPER 157
Query: 225 FV 226
++
Sbjct: 158 YM 159
>gi|339500050|ref|YP_004698085.1| hypothetical protein Spica_1432 [Spirochaeta caldaria DSM 7334]
gi|338834399|gb|AEJ19577.1| Conserved hypothetical protein CHP00095 [Spirochaeta caldaria DSM
7334]
Length = 177
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 19/134 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG+ +++ P G+ +RP M+ ++ + F IL G +LD++SG+G
Sbjct: 1 MRITGGQLCGRRVEVPDGV-IRPAMDRMRESVFAILGDLTG-------KSFLDIFSGSGI 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA SRG + V VEMDP + LI N+ SI V++ AE FV +
Sbjct: 53 IALEAASRGANPVDAVEMDP-LKRKTLIKNV---------SISPVKINCHFMSAELFVKR 102
Query: 229 -DGPFDYMSVTPPY 241
PFDY+ PP+
Sbjct: 103 AKKPFDYIFCDPPF 116
>gi|344924318|ref|ZP_08777779.1| N6-adenine-specific methylase [Candidatus Odyssella
thessalonicensis L13]
Length = 204
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 28/185 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R +KL P RP + ++ A F+IL L+ LD ++G+G+
Sbjct: 1 MRIVGGKNRGRKLALPDQAYTRPTTDRIREAIFNIL--CHHPEIDLQGAYVLDAFAGSGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT----VRVETFLERAEQ 224
+G+EA+SRG + V FVE P ++N+L NL+ F + +H +R RA
Sbjct: 59 LGLEALSRGATNVTFVEAHPK-IANILQQNLKL--FPESDQLHLIISDIRKLKKAARAMD 115
Query: 225 FVGKDGPF----DYMSVTPPY----------TAVDYEVVEYPLRTDMLDTCGCLVKIKDR 270
V D P+ ++ ++ PY T + YE ++TD+ C + +R
Sbjct: 116 LVFLDPPYGKGLEFQAL--PYLVEQNWINSDTVIVYET---EVQTDIAPLLACTAVLDER 170
Query: 271 RFGRT 275
R+G T
Sbjct: 171 RYGGT 175
>gi|118444370|ref|YP_878304.1| methyltransferase [Clostridium novyi NT]
gi|118134826|gb|ABK61870.1| methyltransferase, putative [Clostridium novyi NT]
Length = 185
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 40/197 (20%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ KK+L P+ M RP ++ VK F+I+Q+ + +D+++GTGS
Sbjct: 1 MRIIAGRAKGKKILPPEDMVTRPTLDRVKENIFNIIQN------RVVDAVVIDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF------LDVSSIHTVRVETFLERA 222
+G+E++SRG E + V+ P V L N++ F L++ S + ++
Sbjct: 55 LGLESVSRGAKECYLVDRYP-VTFKRLQQNVKSLRFENECVCLNMDSYNALK-------- 105
Query: 223 EQFVGKDGPFDYMSVTPPYT------AVDYEVVEYPLRTD------------MLDTCGCL 264
F K FD + + PPY A+D E L D + + +
Sbjct: 106 -NFAKKKKIFDLIFIDPPYAKEMIPPAIDIVGKERLLEEDGLIVTKIDSSEEIFEGNDDI 164
Query: 265 VKIKDRRFGRTHLAIYG 281
V I R++G T + Y
Sbjct: 165 VLINHRKYGNTTVCFYA 181
>gi|300781317|ref|ZP_07091171.1| RsmD family RNA methyltransferase [Corynebacterium genitalium ATCC
33030]
gi|300533024|gb|EFK54085.1| RsmD family RNA methyltransferase [Corynebacterium genitalium ATCC
33030]
Length = 195
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 90/197 (45%), Gaps = 38/197 (19%)
Query: 110 QVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ G+AR +K+ + P+G RP + K F LQ G R LDL+SG+G+
Sbjct: 3 RIISGEARGRKIKVPPEG--TRPTSDRAKEGLFSSLQVRFGFVGK----RVLDLFSGSGA 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG EV VE DP V ++ N + G +V I V+ ++ RA +
Sbjct: 57 LGLEAASRGADEVVLVESDPKAV-EIIKHNAQAVGHPNV-HIEPVKASAYVPRAPRAY-- 112
Query: 229 DGPFDYMSVTPPYTAVDYEVVEY--PLRTDMLDTCGCLV--------------------K 266
FD + PPY D +V L+ ++D ++ K
Sbjct: 113 ---FDMVLADPPYDLPDEDVAAMLEALKPALIDGAAVVIERHRDSAETAWPEGYTPTGQK 169
Query: 267 IKDRRFG--RTHLAIYG 281
+K R +G R +A+YG
Sbjct: 170 LKKRLYGIARMDMAVYG 186
>gi|423074920|ref|ZP_17063640.1| RNA methyltransferase, RsmD family [Desulfitobacterium hafniense
DP7]
gi|361854126|gb|EHL06231.1| RNA methyltransferase, RsmD family [Desulfitobacterium hafniense
DP7]
Length = 180
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 72/134 (53%), Gaps = 15/134 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTG 167
++++ G R ++L + GM+ RP + +KGA F++LQ PG R LDL++GTG
Sbjct: 1 MRIIAGDYRGQRLKAVPGMNTRPTADKIKGAIFNVLQEK-------TPGARVLDLFAGTG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++ +EA+SRG E +E ++ N++ G ++ + + T+ +LE+
Sbjct: 54 NLALEALSRGAKEAVLIE-KSRTAQQIIRENIDHMG-VEQARLITMDAFAYLEQH----- 106
Query: 228 KDGPFDYMSVTPPY 241
+ FD + + PPY
Sbjct: 107 GEERFDLIFIDPPY 120
>gi|451818121|ref|YP_007454322.1| rRNA methyltransferase RsmD [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451784100|gb|AGF55068.1| rRNA methyltransferase RsmD [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 185
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 18/137 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR KL+ P M+ RP ++ VK A F +QS P ++ +D+++GTGS
Sbjct: 1 MRIIAGKARGHKLIPPATMETRPTLDRVKEAMFSSIQSY--IPEAV----VVDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
+G+EA SRG SEV+ + P + NV NL + F + + + ++
Sbjct: 55 LGLEAASRGASEVYLFDKSSTTFPLLKQNV--DNLRFQDFC-----FPINTDAY-SGLKK 106
Query: 225 FVGKDGPFDYMSVTPPY 241
K FD + + PPY
Sbjct: 107 LADKGKKFDIIFIDPPY 123
>gi|39934241|ref|NP_946517.1| N-6 adenine-specific DNA methylase [Rhodopseudomonas palustris
CGA009]
gi|39648089|emb|CAE26609.1| N-6 Adenine-specific DNA methylase:Conserved hypothetical protein
95 [Rhodopseudomonas palustris CGA009]
Length = 193
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + L++P D+RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 6 MRVIGGRLRGRNLVAPSSRDIRPTADRLRESVFNILMHAYENP--ILDARVLDLFAGTGA 63
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA SRG V FV+ + +L N+E G VS ++
Sbjct: 64 LGIEASSRGAKFVLFVD-NGAEARALLRANVETLGLGGVSKVY 105
>gi|374582926|ref|ZP_09656020.1| RNA methyltransferase, RsmD family [Desulfosporosinus youngiae DSM
17734]
gi|374419008|gb|EHQ91443.1| RNA methyltransferase, RsmD family [Desulfosporosinus youngiae DSM
17734]
Length = 183
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 19/149 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R ++L + +GM RP + VKGA F++L + R LDL++GTG+
Sbjct: 1 MRIIAGEMRGRQLKAVEGMHTRPTSDKVKGAIFNVLGD------KVLDSRVLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG E VE V+ NL+ G S + FL A Q++ +
Sbjct: 55 LAIEALSRGSCEAVLVEKSHNAFQ-VIQKNLQQLGVNQKSRL-------FLMDAFQYIHR 106
Query: 229 --DGPFDYMSVTPPYTAVDYEVVEYPLRT 255
+ FD + + PPY E+++ L+T
Sbjct: 107 YPNEVFDLIFLDPPYRQ---ELIQKVLQT 132
>gi|352106708|ref|ZP_08961651.1| methyltransferase [Halomonas sp. HAL1]
gi|350597751|gb|EHA13879.1| methyltransferase [Halomonas sp. HAL1]
Length = 204
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 14/133 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GG+ RR++L +RP + V+ F+ L L + LDL++GTG+
Sbjct: 27 LRIIGGEFRRRQLPILDSPGLRPTPDRVRETLFNWLGQ------QLYGQQVLDLFAGTGA 80
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + V FVE DP V + L NL + + S++H V+ +L R Q
Sbjct: 81 LGIEAVSRGAACVDFVERDPRVAAQ-LSTNLA-SLHITSSTVHINDVQAYLTRPAQ---- 134
Query: 229 DGPFDYMSVTPPY 241
P+ + + PP+
Sbjct: 135 --PYSLVFLDPPF 145
>gi|268315830|ref|YP_003289549.1| methyltransferase [Rhodothermus marinus DSM 4252]
gi|345302121|ref|YP_004824023.1| methyltransferase [Rhodothermus marinus SG0.5JP17-172]
gi|262333364|gb|ACY47161.1| methyltransferase [Rhodothermus marinus DSM 4252]
gi|345111354|gb|AEN72186.1| methyltransferase [Rhodothermus marinus SG0.5JP17-172]
Length = 182
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 92/194 (47%), Gaps = 27/194 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ RRK L +PKG RP + + + F +++S L LDL++GTG+
Sbjct: 1 MRIIAGRFRRKTLRAPKGHLTRPTTDRTRESLFHLVESR----MDLEGADVLDLFAGTGA 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EAISRG V FVE+ V++ V N G + +R + +E ++ G
Sbjct: 57 LGLEAISRGAVAVTFVELQGPVLACVR-ENARALGVEEACEF--IRGDA-VEYLRRYSGP 112
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYP-LRTDMLDTCGCLVKIKD--------------RRFG 273
PFD + PPY E+ + P L L G V D RR+G
Sbjct: 113 --PFDLILADPPYDLP--ELPQLPELAFPHLKPHGLFVLEHDKRHNFEGHPHLDTSRRYG 168
Query: 274 RTHLAIYGPDWAQK 287
RT ++++ P ++
Sbjct: 169 RTIVSVFRPQPVER 182
>gi|449123911|ref|ZP_21760232.1| RsmD family RNA methyltransferase [Treponema denticola OTK]
gi|448943701|gb|EMB24588.1| RsmD family RNA methyltransferase [Treponema denticola OTK]
Length = 181
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 94/202 (46%), Gaps = 43/202 (21%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG + +++ PKG+ +RP M+ ++ + F IL G +LDL++G+G
Sbjct: 1 MRITGGSLKNRQVECPKGI-IRPAMDRMRESVFSILGDLSGLS-------FLDLFTGSGV 52
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
G+EA SRG V+ VE D P ++ NV + + + + ETF++RA++
Sbjct: 53 CGLEAYSRGAYPVYLVEKDADKFPVLLKNVSMADKKL-------ECKRMPAETFIKRAKE 105
Query: 225 FVGKDGPFDYMSVTPPY-TAVDYEVVE-----------------YPLRTDMLDTCGCLVK 266
FD + + PP+ E++E P M T G L K
Sbjct: 106 ------SFDIIYLDPPFPYKFHIELLEKIAESKILKEGGLVMMHRPSEKAMPQTIGSLTK 159
Query: 267 IKDRRFGRTHLAIYGPDWAQKK 288
+R +GR+ + Y + +++K
Sbjct: 160 SDERVYGRSIVDFYRKEISRRK 181
>gi|404418382|ref|ZP_11000149.1| N-6 adenine-specific DNA methylase [Staphylococcus arlettae CVD059]
gi|403488975|gb|EJY94553.1| N-6 adenine-specific DNA methylase [Staphylococcus arlettae CVD059]
Length = 129
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 71/133 (53%), Gaps = 12/133 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVISGVHKSKPLESMEGRNTRPTMDKVKEGIFNSLHEVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + + + V+ NL+ G + ++ + L+ + +
Sbjct: 53 LGIEALSRGMEKVIFVDQN-FKATQVIKGNLKSLGIEAQAEVYKNNADRALKALSK---R 108
Query: 229 DGPFDYMSVTPPY 241
+ FDY+ + PPY
Sbjct: 109 EIQFDYIFLDPPY 121
>gi|374851405|dbj|BAL54366.1| N6-adenine-specific methylase [uncultured Chloroflexi bacterium]
Length = 186
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 12/132 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ +KL G RP+ + VK A F+IL GG + W D+++GTG
Sbjct: 1 MRVISGSAKGRKLKPVPGDTTRPITDRVKEALFNIL---GG---DVIGSTWWDVFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIEA+SRG F + P + + NLE TG + + + R + F A
Sbjct: 55 VGIEALSRGALFCRFTDAHPLAIRTIR-ANLEATGLAERAEVR--RGDAF---ALLHAPA 108
Query: 229 DGPFDYMSVTPP 240
D FDY+ + PP
Sbjct: 109 DRTFDYLYIAPP 120
>gi|225180918|ref|ZP_03734366.1| methyltransferase [Dethiobacter alkaliphilus AHT 1]
gi|225168399|gb|EEG77202.1| methyltransferase [Dethiobacter alkaliphilus AHT 1]
Length = 198
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR + L + KGMD RP + VK + F+IL L LD+++G G
Sbjct: 1 MRVIAGCARGRTLKTRKGMDTRPTADRVKESLFNILTP------YLSGAEMLDVFAGNGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI---HTVRVETFLERAEQF 225
VGIEA+SRG FVE + + ++ NL TG D I + + L++ E
Sbjct: 55 VGIEALSRGADRCVFVEKNAQ-CAKIIKDNLILTGLADRGEILPRDALGALSLLQKREN- 112
Query: 226 VGKDGPFDYMSVTPPY 241
F+ + + PPY
Sbjct: 113 -----RFNIIFLDPPY 123
>gi|229918535|ref|YP_002887181.1| methyltransferase [Exiguobacterium sp. AT1b]
gi|229469964|gb|ACQ71736.1| methyltransferase [Exiguobacterium sp. AT1b]
Length = 187
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 15/159 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + +L + G RP + VK + F+I+ G+ LDLY+G+G
Sbjct: 1 MRVISGERKGTRLKAVPGTATRPTTDKVKESLFNII------GPYFSGGKALDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRGC E FV+ P V + NL T + ++ + L EQ +
Sbjct: 55 LGIEALSRGCDEAIFVDRQPKAVQTIQ-ENLRATHYEVKGKVYRQDAKAVL---EQLKVQ 110
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKI 267
F + + PPY A E+ M+D L+ I
Sbjct: 111 QEQFKLIFMDPPYHA-----EEHVTFLQMIDESNLLIDI 144
>gi|302865855|ref|YP_003834492.1| methyltransferase [Micromonospora aurantiaca ATCC 27029]
gi|302568714|gb|ADL44916.1| methyltransferase [Micromonospora aurantiaca ATCC 27029]
Length = 187
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G +++ +P G RP + V+ A F + S L R+ DLY+G+G
Sbjct: 1 MTRIVAGTLGGRRIAAPPGAGTRPTSDRVREALFSAVHSH----VDLDGARFADLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG + V VE D + V+ N+ + + T +V T L
Sbjct: 57 AVGLEALSRGAAHVLLVESDA-RAARVIRENIAALRAAPAARLVTGKVATVLAAGPT--- 112
Query: 228 KDGPFDYMSVTPPYTAVDYEV 248
DGP+D + PPY D E+
Sbjct: 113 -DGPYDVVFADPPYAVPDAEI 132
>gi|169830816|ref|YP_001716798.1| putative methyltransferase [Candidatus Desulforudis audaxviator
MP104C]
gi|169637660|gb|ACA59166.1| putative methyltransferase [Candidatus Desulforudis audaxviator
MP104C]
Length = 187
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 90/191 (47%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + ++L + G+ VRP V+ A F+IL A P S R+LDLY+GTG+
Sbjct: 1 MRIIAGNLKGRRLQAGSGLVVRPTTGRVREALFNIL--AQRVPES----RFLDLYAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA+SRG S FVE D V + +L L TG + + + +G
Sbjct: 55 VGLEALSRGASLAVFVENDRRVAA-ILKRRLAETGLSGRGQVRLGKATAVI----TALGV 109
Query: 229 DG-PFDYMSVTPPYTA---------------VD---YEVVEYPLRTDMLDTCGCLVKIKD 269
+G FD + + PPY+ VD + + E R + G L +
Sbjct: 110 EGRVFDLVFMDPPYSGDLVTKTLSRLFESGVVDPAGWVIAESSFRRPPSEKVGGLYVWRR 169
Query: 270 RRFGRTHLAIY 280
+R+G + L+ Y
Sbjct: 170 KRYGESLLSFY 180
>gi|86607262|ref|YP_476025.1| methyltransferase [Synechococcus sp. JA-3-3Ab]
gi|86555804|gb|ABD00762.1| putative methyltransferase [Synechococcus sp. JA-3-3Ab]
Length = 183
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 75/180 (41%), Gaps = 28/180 (15%)
Query: 118 RKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRPGRWLDLYSGTGSVGIEAISR 176
++ L +P G+ RP V+ A F+IL+ GC RWLDL G G+VG EA+
Sbjct: 8 KRALQTPAGLGTRPTPGRVRQALFNILRGQVEGC-------RWLDLCCGAGTVGAEALCH 60
Query: 177 GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMS 236
G + V +E+ I W V + + +G D PFDY+
Sbjct: 61 GAAFVAGIEI---AAPACRIIRANWAKVAQPGQSFQVIQGDARKLLSRGLGLD-PFDYVY 116
Query: 237 VTPPYTAVDYE----------------VVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIY 280
PPY A Y +VE+ ++ D G L++ R +G+T LA Y
Sbjct: 117 FAPPYEAGLYAPLLPLIPPLLKPGGTLIVEHRSSHELPDQVGSLLRFDQRAYGQTALAFY 176
>gi|375099392|ref|ZP_09745655.1| RNA methyltransferase, RsmD family [Saccharomonospora cyanea
NA-134]
gi|374660124|gb|EHR60002.1| RNA methyltransferase, RsmD family [Saccharomonospora cyanea
NA-134]
Length = 185
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 88/168 (52%), Gaps = 21/168 (12%)
Query: 108 LLQVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ G+A + L + PKG RP E+V+ A F L++A L R LDLYSG+
Sbjct: 1 MTRIVAGRAGGRTLRVPPKG--TRPTTELVREALFSALEAAD----ELDGVRVLDLYSGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G++G+EA+SRG E FVE D +++L N+ G V + RVE + +
Sbjct: 55 GALGLEALSRGAREAVFVEAD-RTAADILRGNIANVGLGGV--VRQGRVEAVV---SEPT 108
Query: 227 GKDGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDT----CGCLVKIKDR 270
G+ PFD + PPY AVD E + L T ++D LV ++ R
Sbjct: 109 GE--PFDLVLADPPY-AVDAETLGVVL-TRLVDNGWLAANALVVVERR 152
>gi|257125253|ref|YP_003163367.1| methyltransferase [Leptotrichia buccalis C-1013-b]
gi|257049192|gb|ACV38376.1| methyltransferase [Leptotrichia buccalis C-1013-b]
Length = 184
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 77/158 (48%), Gaps = 11/158 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + +++ S +G + RP +E +K A F I+ + ++LDLYSGTG+
Sbjct: 1 MRIVAGVLKNRRIKSREGRETRPTLERIKEAIFSII------GEKVADAKFLDLYSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
V EA+SRG +E D + ++I N+ G + + V + E K
Sbjct: 55 VSFEALSRGAKRAIMIEEDKEALR-IIIENVNHLGIEEKCRAYKNDVSRAI---EILARK 110
Query: 229 DGPFDYMSVTPPYTA-VDYEVVEYPLRTDMLDTCGCLV 265
+ FD + + PPY + + +E ++L+ G ++
Sbjct: 111 NEIFDIIFLDPPYKENISTKTIEKISEENLLERDGIII 148
>gi|328545046|ref|YP_004305155.1| methylase [Polymorphum gilvum SL003B-26A1]
gi|326414787|gb|ADZ71850.1| Putative methylase protein [Polymorphum gilvum SL003B-26A1]
Length = 184
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 14/136 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ + L +P+G RP + ++ + F+IL G L R LDL++GTG+
Sbjct: 1 MRIVAGRFKGAALAAPRGEATRPTSDRLRESVFNILVH--GLGVELDSARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EAISRG FVE + V+ N+E G V+ I L R +G
Sbjct: 59 LGFEAISRGARHATFVE-EGVEARGVIRRNMETLGLNGVAKI--------LRRDATRLGP 109
Query: 229 DG---PFDYMSVTPPY 241
G PFD + PPY
Sbjct: 110 AGTIEPFDLVFADPPY 125
>gi|192289767|ref|YP_001990372.1| methyltransferase [Rhodopseudomonas palustris TIE-1]
gi|192283516|gb|ACE99896.1| methyltransferase [Rhodopseudomonas palustris TIE-1]
Length = 188
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + L++P D+RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 1 MRVIGGRLRGRNLVAPSSRDIRPTADRLRESVFNILMHAYENP--ILDARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA SRG V FV+ + +L N+E G VS ++
Sbjct: 59 LGIEASSRGAKFVLFVD-NGAEARALLRANVETLGLGGVSKVY 100
>gi|315502400|ref|YP_004081287.1| methyltransferase [Micromonospora sp. L5]
gi|315409019|gb|ADU07136.1| methyltransferase [Micromonospora sp. L5]
Length = 187
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G +++ +P G RP + V+ A F + S L R+ DLY+G+G
Sbjct: 1 MTRIVAGTLGGRRIAAPPGAGTRPTSDRVREALFSAVHSH----VDLDGARFADLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG + V VE D + V+ N+ + + T +V T L
Sbjct: 57 AVGLEALSRGAAHVLLVESDA-RAARVIRENIAALRAAPAARLVTGKVATVLAAGPT--- 112
Query: 228 KDGPFDYMSVTPPYTAVDYEV 248
DGP+D + PPY D E+
Sbjct: 113 -DGPYDVVFADPPYAVPDAEI 132
>gi|29829212|ref|NP_823846.1| RNA methylase [Streptomyces avermitilis MA-4680]
gi|29606318|dbj|BAC70381.1| putative RNA methylase [Streptomyces avermitilis MA-4680]
Length = 195
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 73/161 (45%), Gaps = 17/161 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G+A ++L P G RP + + F Q+ G P L R LDLY+G+G
Sbjct: 1 MTRVIAGRAGGRRLAVPPGNGTRPTSDRAREGLFSTWQALLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV- 226
+VG+EA+SRG VE D V V +V S+ E +AEQ V
Sbjct: 59 AVGLEALSRGAGHTLLVEADTRAVRTVR---------ENVKSLGLPGAEVRAGKAEQIVQ 109
Query: 227 --GKDGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLV 265
P+D + + PPY D ++ E L L T G L
Sbjct: 110 TPASADPYDIVFLDPPYAVSDDDLREILL---TLRTGGWLA 147
>gi|452994757|emb|CCQ93642.1| putative methyltransferase [Clostridium ultunense Esp]
Length = 183
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 28/191 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + +L PKG D RP + +K + F+IL+ + LDL++G+GS
Sbjct: 1 MRVIAGDKKGFRLKGPKGKDTRPTEDRIKESLFNILRYID------KDSMVLDLFAGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG FV+ + + NLE TG D + + ++ + ++ K
Sbjct: 55 IGIEFLSRGAKRAFFVDR-SYESIRCIKENLEHTGLKDRAEV--IKSDA-IKTVSMLKSK 110
Query: 229 DGPFDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGC-----------------LVKIKDR 270
F+Y+ + PPY + EV+E +L+ G L+K+ R
Sbjct: 111 KLKFNYIFIDPPYGYDLGVEVLEKIWGNSILEEKGIIILEHEKGLNLEDNIYGLIKMDSR 170
Query: 271 RFGRTHLAIYG 281
+G L+ Y
Sbjct: 171 SYGHKSLSFYA 181
>gi|350269797|ref|YP_004881105.1| hypothetical protein OBV_14010 [Oscillibacter valericigenes
Sjm18-20]
gi|348594639|dbj|BAK98599.1| hypothetical protein OBV_14010 [Oscillibacter valericigenes
Sjm18-20]
Length = 190
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 13/135 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR ++L +GM+ RP + VK F LQ + R LDL++GTG
Sbjct: 1 MRVITGSARGRRLKELEGMETRPTTDRVKEGLFSALQF------EIEGRRVLDLFAGTGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FV+ V ++ NL+ TG D + + + +L +
Sbjct: 55 LGIEALSRGAAGCVFVDRRADAV-KLIRENLKITGLTDRARVVSGDSMEYLSALRE---- 109
Query: 229 DGPFDYMSVTPPYTA 243
FD + + PPY A
Sbjct: 110 --KFDLILLDPPYAA 122
>gi|168188108|ref|ZP_02622743.1| putative methyltransferase [Clostridium botulinum C str. Eklund]
gi|169294056|gb|EDS76189.1| putative methyltransferase [Clostridium botulinum C str. Eklund]
Length = 185
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 22/140 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ KK+L P+ M RP ++ VK F+I+Q+ + +D+++GTGS
Sbjct: 1 MRIIAGRAKGKKILPPEDMVTRPTLDRVKENIFNIIQN------RVVDAVVIDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF------LDVSSIHTVRVETFLERA 222
+G+E++SRG E + V+ P V L N++ F L++ S + ++
Sbjct: 55 LGLESVSRGAKECYLVDRYP-VTFKRLQENVKSLRFENECICLNMDSYNALK-------- 105
Query: 223 EQFVGKDGPFDYMSVTPPYT 242
F K FD + + PPY
Sbjct: 106 -SFANKKKIFDLIFIDPPYA 124
>gi|349686310|ref|ZP_08897452.1| N6-adenine-specific methylase [Gluconacetobacter oboediens 174Bp2]
Length = 191
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 7/135 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPA-SLRPGRWLDLYSGTG 167
++++ G R + L +P G RP + V+ A FD L A A ++R R +D ++GTG
Sbjct: 1 MRIIAGDCRGRTLRAPPGQTTRPTADRVRQALFDTLAHAPWAGADTMRGARVMDGFAGTG 60
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++G+EA+SRG + FVE D + L N+ G D + I R + L + + G
Sbjct: 61 ALGLEALSRGAASAVFVERDRAAL-RTLRENVATCGMGDRAII---RAQDMLRLSPR--G 114
Query: 228 KDGPFDYMSVTPPYT 242
P D + + PPY
Sbjct: 115 AAAPVDMVFLDPPYN 129
>gi|389584831|dbj|GAB67562.1| methylase [Plasmodium cynomolgi strain B]
Length = 299
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 90/205 (43%), Gaps = 33/205 (16%)
Query: 114 GKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEA 173
GK + +++ SP RPMM VK + F IL G S LD++SG+G++GIE
Sbjct: 85 GKLKNRRIYSPDTY-TRPMMSKVKESLFSILSHLGIFSNS--TINVLDVFSGSGNLGIEC 141
Query: 174 ISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETF-LERAEQFVGK 228
ISR V FV++ + N+ + N+ + S +R + L +
Sbjct: 142 ISRDIPHVTFVDLSLNSCKTIYENLKLCNINY------SYNQIIRADAMELLKCPLKFHM 195
Query: 229 DGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDML-DTCGCLVKIKD 269
F TPPY + Y +EYP +ML ++ +++
Sbjct: 196 GQKFHLAFFTPPYEQIVYSELIQNISNSELFHPDCLVFIEYPKEIEMLPQRVYNMIGLRN 255
Query: 270 RRFGRTHLAIYGPDWAQKKRKSEKK 294
R+FGRT+ A+Y + + K +E++
Sbjct: 256 RKFGRTYFALYVLNSSGKYLFAERR 280
>gi|224368228|ref|YP_002602391.1| putative small methyltransferase [Desulfobacterium autotrophicum
HRM2]
gi|223690944|gb|ACN14227.1| putative small methyltransferase [Desulfobacterium autotrophicum
HRM2]
Length = 189
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 72/134 (53%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R KKL++P+G++ RP ++ ++ + F+I+ + R LDL++GTG+
Sbjct: 1 MRIISGKYRGKKLITPRGLETRPTLDRIRESIFNIISQ------RIANARVLDLFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+G+EA+SR FV+ + V+ N+ F +++ ++ L RA
Sbjct: 55 LGLEALSRNAGFATFVD-NSREACTVINKNIALLQFEHCTTV----IQHDLTRAGTLARI 109
Query: 228 KDGPFDYMSVTPPY 241
+ FD + + PPY
Sbjct: 110 RPKKFDLVFMDPPY 123
>gi|386728803|ref|YP_006195186.1| Methyltransferase [Staphylococcus aureus subsp. aureus 71193]
gi|418978634|ref|ZP_13526434.1| Methyltransferase [Staphylococcus aureus subsp. aureus DR10]
gi|379993458|gb|EIA14904.1| Methyltransferase [Staphylococcus aureus subsp. aureus DR10]
gi|384230096|gb|AFH69343.1| Methyltransferase [Staphylococcus aureus subsp. aureus 71193]
Length = 183
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 4 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL S ++ + L+ + +
Sbjct: 56 LGIEALSRGMDKVIFVDQNFKAVK-VIKSNLANLNLEAQSEVYKNNADRALKALSK---R 111
Query: 229 DGPFDYMSVTPPYT 242
D FD + + PPY
Sbjct: 112 DIQFDVIFLDPPYN 125
>gi|205373063|ref|ZP_03225868.1| hypothetical protein Bcoam_06735 [Bacillus coahuilensis m4-4]
Length = 191
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 82/159 (51%), Gaps = 12/159 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + +L + G RP + VK A F+++ G LDL++G+G
Sbjct: 1 MRVISGTKKGLRLKAVPGSGTRPTTDKVKEALFNMI------GPYFDGGNALDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+GIEA+SRG V FV+ D + + NLE+ +D SS R ++ +RA + +
Sbjct: 55 LGIEALSRGIEHVIFVDRDQKAIQTIN-QNLEFCK-VDTSSFEVYRNDS--DRALKAIAR 110
Query: 228 KDGPFDYMSVTPPYTAVDY-EVVEYPLRTDMLDTCGCLV 265
+D FD + + PPY + Y +++ + M+D G ++
Sbjct: 111 RDITFDLIFLDPPYKKLKYVQILTEISKHKMIDENGYVI 149
>gi|150016043|ref|YP_001308297.1| methyltransferase [Clostridium beijerinckii NCIMB 8052]
gi|149902508|gb|ABR33341.1| putative methyltransferase [Clostridium beijerinckii NCIMB 8052]
Length = 185
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 10/133 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+AR KL+ P M+ RP ++ VK A F +Q P ++ +D+++GTGS
Sbjct: 1 MRIIAGRARGHKLIPPATMETRPTLDRVKEAMFSSVQMY--IPEAV----VVDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG SEV+ + V +L N+E F D + ++ + E + K
Sbjct: 55 LGLEAASRGASEVYLFDKSS-VTFPLLKENVESLKFQDFC--FPMNIDAY-EGLKNLAKK 110
Query: 229 DGPFDYMSVTPPY 241
FD + + PPY
Sbjct: 111 GKKFDIIFIDPPY 123
>gi|254796588|ref|YP_003081424.1| methyltransferase [Neorickettsia risticii str. Illinois]
gi|254589816|gb|ACT69178.1| putative methyltransferase [Neorickettsia risticii str. Illinois]
Length = 198
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + +K+ KG+++RP M V+ A F+I+ A +LDL++GTGS
Sbjct: 1 MRVISGKYKERKIGLIKGVEIRPTMGKVREALFNIILHARFVTKLPEEIHFLDLFTGTGS 60
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
V IEA+SRG + V +++D + + NLE D ++ V E +Q+ V
Sbjct: 61 VSIEALSRGFASVTAIDID----TRCIYANLEKMAIHDEITVIGRDVVKLEESGKQYDVV 116
Query: 227 GKDGPFDYMSVTPPYTA 243
D P Y TP Y A
Sbjct: 117 FMDPP--YNEKTPKYRA 131
>gi|78187053|ref|YP_375096.1| hypothetical protein Plut_1191 [Chlorobium luteolum DSM 273]
gi|78166955|gb|ABB24053.1| conserved hypothetical protein [Chlorobium luteolum DSM 273]
Length = 178
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 81/170 (47%), Gaps = 28/170 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS----AGGCPASLRPGRWLDLYS 164
+Q++ G+ R +++ + DVRP VK + FDIL S G C LDL++
Sbjct: 1 MQIIAGRYRGRRITTAPLQDVRPCSSRVKKSIFDILHSRMDFEGSCV--------LDLFA 52
Query: 165 GTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT-GFLDVS---SIHTVRVETFLE 220
G GS+G E +SRG S V FV+ P V + +L T G L V SI V FL+
Sbjct: 53 GFGSLGFETLSRGASRVTFVDRHP-----VSLRSLRKTAGELKVEEMVSIVNEDVTLFLQ 107
Query: 221 RAEQFVGKDGPFDYMSVTPPYTAVDY-EVVEYPLRTDMLDTCGCLVKIKD 269
+ G FD + PPY DY ++E + +L+ G L+ D
Sbjct: 108 ------SETGSFDLIFADPPYAWEDYPRLIEGIMAGSLLEEDGWLLIEHD 151
>gi|119963824|ref|YP_948202.1| N6 adenine-specific methylase [Arthrobacter aurescens TC1]
gi|403527676|ref|YP_006662563.1| SAM-dependent methyltransferase, class I [Arthrobacter sp. Rue61a]
gi|119950683|gb|ABM09594.1| putative N6 adenine-specific methylase [Arthrobacter aurescens TC1]
gi|403230103|gb|AFR29525.1| putative SAM-dependent methyltransferase, class I [Arthrobacter sp.
Rue61a]
Length = 197
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 67/135 (49%), Gaps = 12/135 (8%)
Query: 110 QVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169
+++ G L S G RP + VK A F L+S A + R LDLY+G+GS+
Sbjct: 12 RIIAGVGGGNPLTSVPGTATRPTTDRVKEALFSRLESL----AVIDDARVLDLYAGSGSL 67
Query: 170 GIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL---DVSSIHTVRVETFLERAEQFV 226
GIE+ SRG V VE D S+V N + L S+H +VE+FLERA
Sbjct: 68 GIESASRGARTVDLVEFDA-KASDVCQRNADLVNQLLGGKRVSVHRSKVESFLERA---- 122
Query: 227 GKDGPFDYMSVTPPY 241
G +D + + PPY
Sbjct: 123 GDADRWDLVFLDPPY 137
>gi|383828552|ref|ZP_09983641.1| RNA methyltransferase, RsmD family [Saccharomonospora xinjiangensis
XJ-54]
gi|383461205|gb|EID53295.1| RNA methyltransferase, RsmD family [Saccharomonospora xinjiangensis
XJ-54]
Length = 185
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 79/143 (55%), Gaps = 16/143 (11%)
Query: 108 LLQVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ G+A + L + PKG RP E+V+ A F+ L++AG L R LDLYSG+
Sbjct: 1 MTRIVAGRAGGRVLRVPPKG--TRPTTELVREALFNALEAAG----ELDGVRVLDLYSGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G++G+EA+SRG E FVE D + +L N+ G V + R ET + +
Sbjct: 55 GALGLEALSRGAREAVFVEAD-RTAAEILRRNIATVGLGGV--VRQGRAETVV---AEPA 108
Query: 227 GKDGPFDYMSVTPPYTAVDYEVV 249
G+ PF+ + PPY AVD + +
Sbjct: 109 GE--PFELVLADPPY-AVDADTL 128
>gi|322436446|ref|YP_004218658.1| methyltransferase [Granulicella tundricola MP5ACTX9]
gi|321164173|gb|ADW69878.1| methyltransferase [Granulicella tundricola MP5ACTX9]
Length = 203
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 90/195 (46%), Gaps = 30/195 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R + L +P+G+++RP + ++ F+IL + LR R+ DLY+GTG+
Sbjct: 1 MRVIAGKYRSRALTAPEGLEIRPTSDRLRETMFNILAA----RMELRGCRFADLYAGTGA 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS-SIHTVRVETFLERAEQFVG 227
VGIEAISRG + F E + + L NL G ++ L R ++
Sbjct: 57 VGIEAISRGATHCWFGEKAAPALKS-LRGNLAKLGVSGTEFTVEEKGAGGLLGRFQKL-- 113
Query: 228 KDGPFDYMSVTPPYTA-VDYE------------------VVEYPLRT--DMLDTCGCLVK 266
D + + PPY A +Y +VE+ + + + G LV+
Sbjct: 114 -GLAMDLVFIDPPYEAEGEYSQTLGALGRGNLLAAGGLVIVEFATKGKFKLAERYGALVQ 172
Query: 267 IKDRRFGRTHLAIYG 281
+ + G T LA YG
Sbjct: 173 TRVYKQGETSLAFYG 187
>gi|386815781|ref|ZP_10102999.1| 16S rRNA m(2)G-966 methyltransferase [Thiothrix nivea DSM 5205]
gi|386420357|gb|EIJ34192.1| 16S rRNA m(2)G-966 methyltransferase [Thiothrix nivea DSM 5205]
Length = 187
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 14/136 (10%)
Query: 106 HRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSG 165
+ LL+++GG+ R ++L +RP + V+ F+ LQ C R LDL++G
Sbjct: 4 NNLLRIIGGEWRSRRLKFADAPGLRPTPDRVRETLFNWLQVQVPC------SRCLDLFAG 57
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+G++G EA+SRG EV VE P V+ L N+ G + +H +L+RA
Sbjct: 58 SGAIGFEALSRGAQEVVMVEKHPAAVA-ALRENIALLGAQNAVLVHDDAFR-YLQRAT-- 113
Query: 226 VGKDGPFDYMSVTPPY 241
G FD + + PP+
Sbjct: 114 ----GAFDLIFLDPPF 125
>gi|387602396|ref|YP_005733917.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus ST398]
gi|404478460|ref|YP_006709890.1| methylase [Staphylococcus aureus 08BA02176]
gi|418309912|ref|ZP_12921463.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21331]
gi|283470334|emb|CAQ49545.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus ST398]
gi|365238035|gb|EHM78874.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21331]
gi|404439949|gb|AFR73142.1| putative methylase [Staphylococcus aureus 08BA02176]
Length = 180
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL S ++ + L+ + +
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-VIKSNLANLNLEAQSEVYKNNADRALKALSK---R 108
Query: 229 DGPFDYMSVTPPYT 242
D FD + + PPY
Sbjct: 109 DIQFDVIFLDPPYN 122
>gi|405983295|ref|ZP_11041605.1| RsmD family RNA methyltransferase [Slackia piriformis YIT 12062]
gi|404389303|gb|EJZ84380.1| RsmD family RNA methyltransferase [Slackia piriformis YIT 12062]
Length = 191
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 76/164 (46%), Gaps = 24/164 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + + L +PKG + RP + VK + L SA G S LD ++G+G+
Sbjct: 1 MRVIAGLYKGRPLAAPKGSNTRPTTDRVKESLMSTLLSACG---SFDGAYVLDAFAGSGA 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE ISRG + HF E D N L E G L +SS ++A F
Sbjct: 58 LGIECISRGAAAAHFFERD----RNALAALRENIGKLGISS----------DQARVFRA- 102
Query: 229 DGPFDYMSVTPPYTAVDYEVV--EYPLRTDMLDTCGCLVKIKDR 270
D M P AV Y++V + P D G ++K+KD
Sbjct: 103 ----DIMKNPPVIGAVSYDIVFLDPPYAYSFEDVVGLVLKLKDH 142
>gi|219669847|ref|YP_002460282.1| methyltransferase [Desulfitobacterium hafniense DCB-2]
gi|219540107|gb|ACL21846.1| methyltransferase [Desulfitobacterium hafniense DCB-2]
Length = 180
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 72/134 (53%), Gaps = 15/134 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTG 167
++++ G R ++L + GM+ RP + +KGA F++LQ PG R LDL++GTG
Sbjct: 1 MRIIAGDYRGQRLKAVPGMNTRPTADKIKGAIFNVLQEK-------TPGARVLDLFAGTG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++ +EA+SRG E +E ++ N++ G ++ + + + +LE+
Sbjct: 54 NLALEALSRGAKEAVLIE-KSRTAQQIIRENIDHMG-IEQARLIGMDAFAYLEQH----- 106
Query: 228 KDGPFDYMSVTPPY 241
++ FD + + PPY
Sbjct: 107 REERFDLIFIDPPY 120
>gi|427712687|ref|YP_007061311.1| RsmD family RNA methyltransferase [Synechococcus sp. PCC 6312]
gi|427376816|gb|AFY60768.1| RNA methyltransferase, RsmD family [Synechococcus sp. PCC 6312]
Length = 191
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 13/133 (9%)
Query: 118 RKKLLSPKGMDVRPMMEVVKGAAFDILQ-SAGGCPASLRPGRWLDLYSGTGSVGIEAISR 176
++KL +P G RP V+ A F+I Q S GC RWLDL +G+G++G EA+ R
Sbjct: 8 QRKLATPPGNQTRPTTAKVRQALFNIWQNSVSGC-------RWLDLCAGSGAMGAEALVR 60
Query: 177 GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMS 236
G S V +E +P + W V ++ Q + PFD++
Sbjct: 61 GASVVVGIEQNPQAYRLI---QHNWQSLAQAEQQFQVIRADVIQALPQL--QTAPFDHIY 115
Query: 237 VTPPYTAVDYEVV 249
PPY + Y+ V
Sbjct: 116 FDPPYDSNLYQPV 128
>gi|83589787|ref|YP_429796.1| methyltransferase small [Moorella thermoacetica ATCC 39073]
gi|83572701|gb|ABC19253.1| Methyltransferase small [Moorella thermoacetica ATCC 39073]
Length = 192
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 16/137 (11%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+L+++ G+AR ++L +P+G RP + V+ A F+IL + + +LDL++G+G
Sbjct: 1 MLRIIAGEARGRRLGTPRGRTTRPTSDRVREALFNILGN------RVIDSLFLDLFAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL---DVSSIHTVRVETFLERAEQ 224
+VG+EA+SRG V FVE + + L N++ TG V ++ R L R +
Sbjct: 55 AVGLEALSRGARRVVFVENNRQAL-KCLTANIKATGLEGRGQVMALDARRALVTLARRRE 113
Query: 225 FVGKDGPFDYMSVTPPY 241
FD + PPY
Sbjct: 114 ------TFDLIFSDPPY 124
>gi|383450634|ref|YP_005357355.1| modification methyltransferase [Flavobacterium indicum GPTSA100-9]
gi|380502256|emb|CCG53298.1| Probable modification methyltransferase [Flavobacterium indicum
GPTSA100-9]
Length = 207
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 82/160 (51%), Gaps = 16/160 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + K+L +PK + VRP ++ K A F+IL + + + + LDL++GTG+
Sbjct: 1 MRIISGKYKGKRLQAPKNLPVRPTTDMAKEALFNILNN----HFNFQELKILDLFTGTGN 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ E SRG + + V+ D V+ + + E D+++I + V FLE+
Sbjct: 57 ISYEFASRGAAPILCVDADFGCVNYIKKISSELD--FDITAIKS-DVFKFLEK------N 107
Query: 229 DGPFDYMSVTPPY--TAVDYE-VVEYPLRTDMLDTCGCLV 265
+ +D + PPY D+E +V +LD G L+
Sbjct: 108 NSTYDIIFADPPYHLDQKDFEKIVHLVFERQLLDEVGMLI 147
>gi|315038076|ref|YP_004031644.1| methyltransferase [Lactobacillus amylovorus GRL 1112]
gi|312276209|gb|ADQ58849.1| Methyltransferase [Lactobacillus amylovorus GRL 1112]
Length = 183
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 10/134 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L + K RP + VK + F+ L G LDLY+G+G+
Sbjct: 1 MRIISGKYAKRNLFTLKSNRTRPTSDKVKESLFNSLGQF------FNGGNVLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRGC V+++ S ++ N+ T + I+ +R L + F K
Sbjct: 55 LGIEAVSRGCDHASLVDINHAACS-IIKKNVALTKEENRFDIYNMRSSAAL---KLFAEK 110
Query: 229 DGPFDYMSVTPPYT 242
+ FD + + PPY
Sbjct: 111 ELKFDLVFLDPPYA 124
>gi|271969201|ref|YP_003343397.1| hypothetical protein [Streptosporangium roseum DSM 43021]
gi|270512376|gb|ACZ90654.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
Length = 189
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 64/141 (45%), Gaps = 14/141 (9%)
Query: 110 QVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169
+V+ G A ++L P G RP + + F + G SL R LDLY+G+G+V
Sbjct: 3 RVIAGSAGGRRLAVPPGRGTRPTSDRAREGIF---STVGSLLGSLDGARVLDLYAGSGAV 59
Query: 170 GIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
G+EA+SRG VE D + I L G L + RVE LER G
Sbjct: 60 GLEALSRGAVHALLVESDAKAARTIRANIATLGLPGAL----LAADRVERVLER-----G 110
Query: 228 KDGPFDYMSVTPPYTAVDYEV 248
+ P+D + PPY D V
Sbjct: 111 TEEPYDLVFADPPYAVTDEAV 131
>gi|363891848|ref|ZP_09319023.1| RsmD family RNA methyltransferase [Eubacteriaceae bacterium CM2]
gi|361964843|gb|EHL17849.1| RsmD family RNA methyltransferase [Eubacteriaceae bacterium CM2]
Length = 184
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R KKLLSPK +RP + VK + F+++Q+ + ++LDL+SG+G+
Sbjct: 1 MRVISGKYRGKKLLSPKDDYIRPTTDRVKESMFNMIQNY------IYGSKFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA SR + VE
Sbjct: 55 IGIEAFSRDAKHITMVE 71
>gi|88608384|ref|YP_506096.1| putative methyltransferase [Neorickettsia sennetsu str. Miyayama]
gi|88600553|gb|ABD46021.1| putative methyltransferase [Neorickettsia sennetsu str. Miyayama]
Length = 198
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 11/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + +K+ KG+++RP M V+ A F+I+ A +LDL++GTGS
Sbjct: 1 MRVISGKYKERKIGLIKGVEIRPTMGKVREALFNIILHARFVTKLPEETHFLDLFTGTGS 60
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
V IEA+SRG + V +++D + + NLE D ++ + + E ++
Sbjct: 61 VSIEALSRGFASVTAIDID----TRCIYANLEKMAIHDKITVISRDIVKLEESGKR---- 112
Query: 229 DGPFDYMSVTPPYT 242
+D + + PPY
Sbjct: 113 ---YDVVFMDPPYN 123
>gi|343127525|ref|YP_004777456.1| hypothetical protein BbiDN127_0205 [Borrelia bissettii DN127]
gi|342222213|gb|AEL18391.1| conserved hypothetical protein [Borrelia bissettii DN127]
Length = 165
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 27/171 (15%)
Query: 122 LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEV 181
+ PK VRP+M +V+ A F I+ + + LD+++GTG + IEA+SRG S
Sbjct: 1 MFPKNGSVRPVMSLVREAFFSIIFK------DIVNSKILDVFAGTGIMSIEALSRGASLA 54
Query: 182 HFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG-KDGPFDYMSVTPP 240
H VE + + N L+ N + V + + F + AE F+G KD +D++ + PP
Sbjct: 55 HLVECNRK-IKNTLVKNFSF-----VEEFY----KFFFQSAEDFLGKKDLFYDFIYLDPP 104
Query: 241 YTAVD-YEVVEYPLRTDMLDTCGCLV---------KIKDRRFGRTHLAIYG 281
+ + ++E L+ +L+ ++ KI +F +L YG
Sbjct: 105 FNYKNKVNLLEIILKGKILNDKVSIIMHYPSGEDLKINTSKFSIYNLKRYG 155
>gi|416998985|ref|ZP_11939654.1| RNA methyltransferase, RsmD family [Veillonella parvula
ACS-068-V-Sch12]
gi|333977138|gb|EGL77997.1| RNA methyltransferase, RsmD family [Veillonella parvula
ACS-068-V-Sch12]
Length = 183
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 21/137 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG A+ + +PKG+D RP ++ V+ + F++L + G + + LD++SGTG+
Sbjct: 1 MRIIGGTAKGHAIKAPKGLDTRPTLDRVRESVFNVLANRGIFGSDI-----LDIFSGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--- 225
V IEA+SRG + H V +D + +++ N + D R+E + Q
Sbjct: 56 VAIEALSRGAA--HAVAVD-FKTGKLILENAKHCRVDD-------RLEIIPRKLSQLKNY 105
Query: 226 -VGKDGPFDYMSVTPPY 241
VG+ FDY+ PPY
Sbjct: 106 IVGRQ--FDYIFSDPPY 120
>gi|385678572|ref|ZP_10052500.1| methyltransferase [Amycolatopsis sp. ATCC 39116]
Length = 186
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 13/131 (9%)
Query: 112 LGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGI 171
+ G A ++L P RP E V+ A F+ L++AG L R LDLY+G+G++G+
Sbjct: 1 MAGAASGRRLKVPA-QGTRPTSERVREALFNALEAAG----ELTDARVLDLYAGSGALGL 55
Query: 172 EAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231
EA+SRG ++ FVE D V VL N+ G S+ + VET L + D P
Sbjct: 56 EALSRGAADAVFVESDRRAV-QVLKANVSALGL--GGSVRSGPVETVLAQP-----ADEP 107
Query: 232 FDYMSVTPPYT 242
F + PPY+
Sbjct: 108 FHLVLADPPYS 118
>gi|126664257|ref|ZP_01735249.1| putative methyltransferase [Flavobacteria bacterium BAL38]
gi|126623789|gb|EAZ94485.1| putative methyltransferase [Flavobacteria bacterium BAL38]
Length = 192
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + ++L++PK + VRP ++ K + F+IL + +L + LDL+SGTG+
Sbjct: 1 MRIISGKHKGRRLVAPKNLPVRPTTDMCKESLFNILNNY----FNLHGLKVLDLFSGTGN 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ E SRG + V+ D V+ + E LD+S+I + V FLE+++
Sbjct: 57 ISYEFASRGAGPITSVDGDMGCVNFIKKTATELD--LDISAIKS-DVFKFLEKSK----- 108
Query: 229 DGPFDYMSVTPPYT--AVDYE-VVEYPLRTDMLDTCGCLV 265
+D + PPY ++E +++ ++LD G L+
Sbjct: 109 -ATYDIIFADPPYDIGQENFEKIIQEIFENELLDEEGMLI 147
>gi|357392054|ref|YP_004906895.1| putative RNA methyltransferase [Kitasatospora setae KM-6054]
gi|311898531|dbj|BAJ30939.1| putative RNA methyltransferase [Kitasatospora setae KM-6054]
Length = 191
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 15/138 (10%)
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
++ G+A + L +P G + RP + + A F +++ G A R LDL++G+G+VG
Sbjct: 1 MIAGRAGGRPLAAPPGRNTRPTSDKAREAMFSTVEALSGPIAG---ARMLDLFAGSGAVG 57
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK-- 228
+EA+SRG + VE DP V V +V ++ E E+AE+ +
Sbjct: 58 LEALSRGAAHALLVESDPGAVRTVR---------ENVRTLGLPGAEVRAEKAEKVIASAP 108
Query: 229 -DGPFDYMSVTPPYTAVD 245
P+D + + PPY D
Sbjct: 109 PATPYDLVFLDPPYAVED 126
>gi|363891046|ref|ZP_09318329.1| RsmD family RNA methyltransferase [Eubacteriaceae bacterium CM5]
gi|361962013|gb|EHL15162.1| RsmD family RNA methyltransferase [Eubacteriaceae bacterium CM5]
Length = 184
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R KKLLSPK +RP + VK + F+++Q+ + ++LDL+SG+G+
Sbjct: 1 MRVISGKYRGKKLLSPKDDYIRPTTDRVKESMFNMIQNY------IYGSKFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA SR + VE
Sbjct: 55 IGIEAFSRDAKHITMVE 71
>gi|300361484|ref|ZP_07057661.1| probable methyltransferase [Lactobacillus gasseri JV-V03]
gi|300354103|gb|EFJ69974.1| probable methyltransferase [Lactobacillus gasseri JV-V03]
Length = 182
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 31/191 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK ++ L + K RP + VKG+ F+ L Q G GR LDLY+G+G
Sbjct: 1 MRIIAGKYAKRNLHTLKSNATRPTSDKVKGSLFNSLGQFFDG-------GRVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG V++ ++ N+E T D + ++ RA + +
Sbjct: 54 ALGIEAVSRGYDSAVLVDISGQACQ-IIRKNVELTKEEDRFRV----LKCSDNRAIKILN 108
Query: 228 KDG-PFDYMSVTPPYTAVDY-EVVEYPLRTDMLDTCGCLVK----------------IKD 269
++G FD + + PPY +++ L D+L+ +V IKD
Sbjct: 109 EEGKKFDLIFLDPPYAKQKIVKIMTKLLENDLLNDNALIVAETDEHDELPDVSAFSIIKD 168
Query: 270 RRFGRTHLAIY 280
+ GRT + +Y
Sbjct: 169 HQLGRTKVKVY 179
>gi|89895418|ref|YP_518905.1| hypothetical protein DSY2672 [Desulfitobacterium hafniense Y51]
gi|89334866|dbj|BAE84461.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 180
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 15/134 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTG 167
++++ G R ++L + GM+ RP + +KGA F++LQ PG R LDL++GTG
Sbjct: 1 MRIIAGDYRGQRLKAVPGMNTRPTADKIKGAIFNVLQEK-------TPGARVLDLFAGTG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++ +EA+SRG E +E ++ N++ G V + ++ F +
Sbjct: 54 NLALEALSRGAKEAVLIE-KSRTAQQIIRENIDHMG---VEQARLIGMDAFAYLEQH--- 106
Query: 228 KDGPFDYMSVTPPY 241
++ FD + + PPY
Sbjct: 107 REERFDLIFIDPPY 120
>gi|254281665|ref|ZP_04956633.1| RNA methyltransferase, RsmD family [gamma proteobacterium NOR51-B]
gi|219677868|gb|EED34217.1| RNA methyltransferase, RsmD family [gamma proteobacterium NOR51-B]
Length = 215
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 12/169 (7%)
Query: 104 TTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLY 163
T R L+++GG R + L+ P +RP + V+ F+ L A + R LDL+
Sbjct: 15 TARRKLRIIGGTWRGRTLVFPDLEGLRPTPDRVRETLFNWL------VAHITGSRCLDLF 68
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+G+G++G+EA+SRG + FVE + + + ++ D S + V F+ R+
Sbjct: 69 AGSGALGLEALSRGAARCDFVERHR-LAAETIEQHIRQLDAADRSRVAVVDASDFISRSR 127
Query: 224 QF-VGKD--GPFDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLVKIK 268
G D GPFD + + PP+ A+ + + + D L G LV I+
Sbjct: 128 PIDSGHDQSGPFDIVFIDPPFADALVAGITQQLIAADCLKQ-GSLVYIE 175
>gi|383761399|ref|YP_005440381.1| hypothetical protein CLDAP_04440 [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381381667|dbj|BAL98483.1| hypothetical protein CLDAP_04440 [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 218
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 12/132 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKA+ +KLL RP+ + K A F IL + + R LDL+ GTGS
Sbjct: 1 MRVIAGKAKGRKLLMTPSEGTRPITDRAKEALFSILGN------WIVDARVLDLFGGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIEA+SRG + V FVE+ ++ + NL +++ T+L+R +
Sbjct: 55 VGIEALSRGAAWVDFVELSRKAIATIH-ANLRHCRLDAQAAVLRSDSFTYLQRYQ----- 108
Query: 229 DGPFDYMSVTPP 240
P+D + V PP
Sbjct: 109 GDPYDLIFVAPP 120
>gi|418461490|ref|ZP_13032562.1| putative methyltransferase [Saccharomonospora azurea SZMC 14600]
gi|359738360|gb|EHK87248.1| putative methyltransferase [Saccharomonospora azurea SZMC 14600]
Length = 181
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 71/137 (51%), Gaps = 18/137 (13%)
Query: 113 GGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIE 172
GG+ R + PKG RP E+V+ A F L++A L R LDLYSG+G++G+E
Sbjct: 6 GGRTLR---VPPKG--TRPTTELVREALFSALEAAD----ELDGVRVLDLYSGSGALGLE 56
Query: 173 AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232
A+SRG E FVE D +++L N+ G V + RVE+ + PF
Sbjct: 57 ALSRGAKEAVFVEAD-RTAADILRGNIANVGLGGV--VRQGRVESVVAEPAGT-----PF 108
Query: 233 DYMSVTPPYTAVDYEVV 249
D + PPY AVD E +
Sbjct: 109 DLVLADPPY-AVDAETL 124
>gi|335043411|ref|ZP_08536438.1| N6-adenine-specific methylase [Methylophaga aminisulfidivorans MP]
gi|333790025|gb|EGL55907.1| N6-adenine-specific methylase [Methylophaga aminisulfidivorans MP]
Length = 198
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 16/173 (9%)
Query: 97 EKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRP 156
+++ + RT L+++GG R +KL P+ +RP + + F+ LQ G
Sbjct: 3 KQNNKARTGAGTLRIIGGIWRGRKLGFPEVEGLRPTSDRTRETVFNWLQPHIGAS----- 57
Query: 157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216
R LDL++G+G++G EA SRG +EV VE D L N E L ++ H
Sbjct: 58 -RCLDLFAGSGALGFEAASRGAAEVVLVENDRQAFLK-LKQNAE---ALQAANCHIENTS 112
Query: 217 TFLERAEQFVGK-DGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIK 268
AEQ +G D FD + V PPY A + + L + L G ++ ++
Sbjct: 113 -----AEQAIGVLDKSFDIVFVDPPYQADLWTKTAFALLSHKLLNDGAMIYLE 160
>gi|226228554|ref|YP_002762660.1| hypothetical protein GAU_3148 [Gemmatimonas aurantiaca T-27]
gi|226091745|dbj|BAH40190.1| hypothetical protein GAU_3148 [Gemmatimonas aurantiaca T-27]
Length = 192
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 12/133 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK + L SPK VRP E V+ +++ A L R +DL++GTG+
Sbjct: 1 MRIVGGKYAGRNLTSPKDFRVRPTAEAVRVEMMKLVR------ADLEGARVIDLFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG V FVE P + + L N+ L V++ V + L A +
Sbjct: 55 IGLEALSRGAKYVDFVEFRPSSL-HALKANI---AALRVTTKARVYKKDALPFANALIA- 109
Query: 229 DGPFDYMSVTPPY 241
G +D V PPY
Sbjct: 110 -GRYDLAFVDPPY 121
>gi|239906807|ref|YP_002953548.1| hypothetical protein DMR_21710 [Desulfovibrio magneticus RS-1]
gi|239796673|dbj|BAH75662.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 200
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 93/214 (43%), Gaps = 40/214 (18%)
Query: 109 LQVLGGK--ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++++GG+ R K++ G+ RP V+ A F +L + G A R LD Y+G
Sbjct: 1 MRIIGGRLGGRVIKVIDSPGL--RPATGRVREALFSMLAARG---ALFHGARVLDCYAGA 55
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF-LDVSSIHTVRVETFLERAEQF 225
GSVGIEA+SRG + F+E P V+ VL NL G DV+ + V L R
Sbjct: 56 GSVGIEALSRGAGKAVFIERSP-AVAKVLKENLRGLGLGPDVAQVVEADVVKALGRL--- 111
Query: 226 VGKDGPFDYMSVTPPY------------TAVDY------EVVEYPLRTDMLDTC-----G 262
G FD +++ PPY A+D V E D+ +T
Sbjct: 112 --SGGYFDLIAIDPPYGQDLLPPTLAKIAALDLIAPGGIVVAEIEAGLDLPETAVPPVFD 169
Query: 263 CLVKIKDRRFGRTHLAIYGPDWAQKKRKSEKKIP 296
CL DR +G+T + ++ P E IP
Sbjct: 170 CL---TDRTYGQTRIILWTPRNPASPSTPEPSIP 200
>gi|365888468|ref|ZP_09427231.1| putative methyltransferase [Bradyrhizobium sp. STM 3809]
gi|365335851|emb|CCD99762.1| putative methyltransferase [Bradyrhizobium sp. STM 3809]
Length = 184
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 8/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + + SP D+RP + ++ A F+IL A P R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNIASPASRDIRPTQDRLREALFNILVHAYDDPVD--GARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FV+ + +L N+E G V+ ++ R T L A
Sbjct: 59 LGIEAVSRGAAFTLFVD-NGAEARALLRNNVEALGLGGVTKVYR-RDATNLGPAHPVE-- 114
Query: 229 DGPFDYMSVTPPY 241
PF + + PPY
Sbjct: 115 --PFSLVFLDPPY 125
>gi|313893400|ref|ZP_07826972.1| RNA methyltransferase, RsmD family [Veillonella sp. oral taxon 158
str. F0412]
gi|313442041|gb|EFR60461.1| RNA methyltransferase, RsmD family [Veillonella sp. oral taxon 158
str. F0412]
Length = 183
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 94/193 (48%), Gaps = 38/193 (19%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG A+ + +PKG+D RP ++ V+ + F++L + G + LD++SGTG+
Sbjct: 1 MRIIGGTAKGHAIKAPKGVDTRPTLDRVRESVFNVLANRGIFGTDV-----LDIFSGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--- 225
V IEA+SRG + H V +D + +++ N + D R+E + Q
Sbjct: 56 VAIEALSRGAA--HAVAVD-FKTGKLILENAKHCRVDD-------RLEIIPRKLSQLKNY 105
Query: 226 -VGKDGPFDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGCLVK----------------I 267
VG+ FDY+ PPY + ++ + D+L G L+ I
Sbjct: 106 IVGRQ--FDYIFSDPPYENGFIQDTIDLVVTYDLLKPEGVLLLEHHKNEVFSLPESWECI 163
Query: 268 KDRRFGRTHLAIY 280
K+++FG T ++ +
Sbjct: 164 KEQKFGYTMVSYF 176
>gi|430750360|ref|YP_007213268.1| RsmD family RNA methyltransferase [Thermobacillus composti KWC4]
gi|430734325|gb|AGA58270.1| RNA methyltransferase, RsmD family [Thermobacillus composti KWC4]
Length = 197
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ L + GM+ RP + VK A F ++ G LDL++GTG
Sbjct: 1 MRVIAGTAKGTPLRAVPGMNTRPTTDKVKEAIFSMIGP------YFDGGAALDLFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F++ D V+ V+ N E + S I+ ERA + + K
Sbjct: 55 LGIEALSRGADRAVFIDADRQAVA-VIRRNAEAARMAERSEIYC----NTAERALRILAK 109
Query: 229 DGP-FDYMSVTPPY 241
G F Y+ + PPY
Sbjct: 110 RGAVFRYVFLDPPY 123
>gi|319649691|ref|ZP_08003847.1| methyltransferase [Bacillus sp. 2_A_57_CT2]
gi|317398853|gb|EFV79535.1| methyltransferase [Bacillus sp. 2_A_57_CT2]
Length = 184
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 30/196 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + K L + G RP + VK A F+I+ G LDL++G+G
Sbjct: 1 MRVVSGTRKGKILKAVPGSSTRPTTDKVKEAIFNII------GPYFEGGLGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ D + + N+ GF + + ++ + + + + +
Sbjct: 55 LGIEALSRGADKVIFVDRDGKAIQTIH-ENIRTCGFEEKAEVYRNDADRAI---KAILKR 110
Query: 229 DGPFDYMSVTPPY---------TAVDYE---------VVEYPLRTDMLDTCGCLVKIKDR 270
D FDY+ + PPY +D + E+ ++ D+ G LV+ K
Sbjct: 111 DLVFDYIFLDPPYRKQQLLKLLKLIDENDLLSVQGTILCEHGSDVELPDSVGRLVQRKHE 170
Query: 271 RFGRTHLAIYGPDWAQ 286
+G ++IY WA+
Sbjct: 171 NYGIISISIY--SWAE 184
>gi|49483286|ref|YP_040510.1| methylase [Staphylococcus aureus subsp. aureus MRSA252]
gi|282903672|ref|ZP_06311560.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus C160]
gi|282905441|ref|ZP_06313296.1| RNA methyltransferase RsmD family protein [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282908413|ref|ZP_06316244.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|283957867|ref|ZP_06375318.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus A017934/97]
gi|295427611|ref|ZP_06820243.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297591435|ref|ZP_06950073.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus MN8]
gi|415684403|ref|ZP_11449532.1| putative methylase [Staphylococcus aureus subsp. aureus CGS00]
gi|418566384|ref|ZP_13130765.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21264]
gi|418581759|ref|ZP_13145839.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1605]
gi|418595224|ref|ZP_13158845.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21342]
gi|418602345|ref|ZP_13165751.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21345]
gi|418891675|ref|ZP_13445792.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1176]
gi|418897449|ref|ZP_13451522.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC341D]
gi|418900337|ref|ZP_13454395.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1214]
gi|418908830|ref|ZP_13462835.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG149]
gi|418916914|ref|ZP_13470873.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1267]
gi|418922701|ref|ZP_13476618.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1233]
gi|418982033|ref|ZP_13529742.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1242]
gi|418985493|ref|ZP_13533181.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1500]
gi|49241415|emb|CAG40099.1| putative methylase [Staphylococcus aureus subsp. aureus MRSA252]
gi|282328078|gb|EFB58360.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282330733|gb|EFB60247.1| RNA methyltransferase RsmD family protein [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282595290|gb|EFC00254.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus C160]
gi|283790016|gb|EFC28833.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus A017934/97]
gi|295127969|gb|EFG57603.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297576321|gb|EFH95037.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus MN8]
gi|315193792|gb|EFU24187.1| putative methylase [Staphylococcus aureus subsp. aureus CGS00]
gi|371970597|gb|EHO88014.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21264]
gi|374396045|gb|EHQ67296.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21345]
gi|374402091|gb|EHQ73134.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21342]
gi|377704064|gb|EHT28375.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1214]
gi|377705296|gb|EHT29603.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1242]
gi|377706553|gb|EHT30849.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1500]
gi|377711309|gb|EHT35542.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1605]
gi|377732632|gb|EHT56683.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1176]
gi|377736024|gb|EHT60054.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1233]
gi|377750088|gb|EHT74026.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1267]
gi|377754826|gb|EHT78732.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG149]
gi|377762228|gb|EHT86097.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC341D]
Length = 180
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL S ++ + L+ + +
Sbjct: 53 LGIEALSRGIDKVIFVDQNFKAVK-VIKSNLANLDLEAQSEVYKNNADRALKALSK---R 108
Query: 229 DGPFDYMSVTPPYT 242
D FD + + PPY
Sbjct: 109 DIQFDVIFLDPPYN 122
>gi|258423833|ref|ZP_05686719.1| RsmD family RNA methyltransferase [Staphylococcus aureus A9635]
gi|417891661|ref|ZP_12535718.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21200]
gi|418283095|ref|ZP_12895852.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21202]
gi|418306599|ref|ZP_12918378.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21194]
gi|418559124|ref|ZP_13123670.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21252]
gi|418888915|ref|ZP_13443051.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1524]
gi|418993742|ref|ZP_13541379.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG290]
gi|257846065|gb|EEV70093.1| RsmD family RNA methyltransferase [Staphylococcus aureus A9635]
gi|341850947|gb|EGS91876.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21200]
gi|365168692|gb|EHM60030.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21202]
gi|365246465|gb|EHM87015.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21194]
gi|371975415|gb|EHO92709.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21252]
gi|377746901|gb|EHT70871.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG290]
gi|377754425|gb|EHT78334.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1524]
Length = 180
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL S ++ + L+ + +
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-VIKSNLANLDLEAQSEVYKNNADRALKALSK---R 108
Query: 229 DGPFDYMSVTPPYT 242
D FD + + PPY
Sbjct: 109 DIQFDVIFLDPPYN 122
>gi|402839250|ref|ZP_10887743.1| RNA methyltransferase, RsmD family [Eubacteriaceae bacterium OBRC8]
gi|402270789|gb|EJU20047.1| RNA methyltransferase, RsmD family [Eubacteriaceae bacterium OBRC8]
Length = 184
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R KKLLSPK +RP + VK + F+++Q+ + ++LDL+SG+G+
Sbjct: 1 MRVISGKYRGKKLLSPKDDYIRPTTDRVKESMFNMIQNY------IYGSKFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA SR + VE
Sbjct: 55 IGIEAFSRDAKHITMVE 71
>gi|146342899|ref|YP_001207947.1| methyltransferase [Bradyrhizobium sp. ORS 278]
gi|146195705|emb|CAL79732.1| Putative methyltransferase [Bradyrhizobium sp. ORS 278]
Length = 184
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 8/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + + SP D+RP + ++ A F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNIASPASRDIRPTQDRLREALFNILVHAYDDP--IEGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FV+ + +L N+E G V+ ++ R T L A
Sbjct: 59 LGIEAVSRGAAFTLFVD-NGAEARALLRNNVEALGLGGVTKVYR-RDATDLGPAHPVE-- 114
Query: 229 DGPFDYMSVTPPY 241
PF + + PPY
Sbjct: 115 --PFALVFLDPPY 125
>gi|260890394|ref|ZP_05901657.1| RNA methyltransferase, RsmD family [Leptotrichia hofstadii F0254]
gi|260860014|gb|EEX74514.1| RNA methyltransferase, RsmD family [Leptotrichia hofstadii F0254]
Length = 184
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 76/158 (48%), Gaps = 11/158 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + +++ S +G + RP +E +K A F I+ + ++LDLYSGTG+
Sbjct: 1 MRIVAGTLKNRRIKSREGRETRPTLERIKEAIFSII------GEKVVDAKFLDLYSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
V EA+SRG +E D + ++I N+ G + + + E K
Sbjct: 55 VSFEALSRGAKRAIMIEEDKEALR-IIIENVNHLGMEEKCRAYKNDASRAI---EILARK 110
Query: 229 DGPFDYMSVTPPYTA-VDYEVVEYPLRTDMLDTCGCLV 265
+ FD + + PPY + + +E ++L+ G ++
Sbjct: 111 NETFDIIFLDPPYKENISTKTIEKISEENLLERDGIII 148
>gi|420163627|ref|ZP_14670370.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM095]
gi|420167465|ref|ZP_14674123.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM087]
gi|394234050|gb|EJD79637.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM095]
gi|394238434|gb|EJD83902.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM087]
Length = 180
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 13/158 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLYDVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG ++ FV+ + V V+ NL + + ++ + L + +
Sbjct: 53 LGIEALSRGMDKMIFVDQNFKAVK-VIKANLNQLNLMSQAEVYKNNADRAL---KALAKR 108
Query: 229 DGPFDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLV 265
+ FD + + PPY + E + ++L G +V
Sbjct: 109 EIQFDVIFLDPPYNKGLINEAISRIAEFNLLKENGIIV 146
>gi|363899470|ref|ZP_09325979.1| RsmD family RNA methyltransferase [Oribacterium sp. ACB1]
gi|395208339|ref|ZP_10397580.1| RNA methyltransferase, RsmD family [Oribacterium sp. ACB8]
gi|361958510|gb|EHL11809.1| RsmD family RNA methyltransferase [Oribacterium sp. ACB1]
gi|394705920|gb|EJF13444.1| RNA methyltransferase, RsmD family [Oribacterium sp. ACB8]
Length = 190
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 18/137 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L +P G+D RP + +K F+ILQ L LDL++G+G+
Sbjct: 1 MRVIAGTARRINLKTPDGLDTRPTQDRIKETLFNILQF------DLEGQDVLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI----HTVRVETFLERAEQ 224
+GIEA+SRG F + V + NLE T F + + + + + + L
Sbjct: 55 LGIEALSRGAKRAVFCDAARQAVL-CIEENLEKTHFKEQALVLPGDYNGAINSLLR---- 109
Query: 225 FVGKDGPFDYMSVTPPY 241
KD F + + PPY
Sbjct: 110 ---KDYHFGLVFMDPPY 123
>gi|82750731|ref|YP_416472.1| methyltransferase [Staphylococcus aureus RF122]
gi|82656262|emb|CAI80676.1| probable methyltransferase [Staphylococcus aureus RF122]
Length = 180
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL S ++ + L+ + +
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-VIKSNLANLDLETQSEVYKNNADRALKALSK---R 108
Query: 229 DGPFDYMSVTPPYT 242
D FD + + PPY
Sbjct: 109 DIQFDVIFLDPPYN 122
>gi|255534474|ref|YP_003094845.1| methyltransferase [Flavobacteriaceae bacterium 3519-10]
gi|255340670|gb|ACU06783.1| putative methyltransferase [Flavobacteriaceae bacterium 3519-10]
Length = 196
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 21/150 (14%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G+ + K++ +PK DVRP + K A F I+++ S G LDL++G G
Sbjct: 1 MYRIISGRWKSKRISAPKNFDVRPTTDFAKEALFSIIENRFNIDVS--AGSVLDLFAGIG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF-V 226
SV +E SRGC +V +EM N GF+ +++ LE A Q V
Sbjct: 59 SVSLEFASRGCQDVTSIEM-----------NARHAGFISSTAVE-------LEMAPQVNV 100
Query: 227 GKDGPFDYMSVTPPYTAVDYEVVEYPLRTD 256
+ ++Y+ + D + + P TD
Sbjct: 101 QRGDVYEYLKKNRNRKSYDIVMADPPFDTD 130
>gi|379020830|ref|YP_005297492.1| ribosomal RNA small subunit methyltransferase D [Staphylococcus
aureus subsp. aureus M013]
gi|418563180|ref|ZP_13127622.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21262]
gi|418949710|ref|ZP_13501943.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-160]
gi|359830139|gb|AEV78117.1| Ribosomal RNA small subunit methyltransferase D [Staphylococcus
aureus subsp. aureus M013]
gi|371971724|gb|EHO89120.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21262]
gi|375378242|gb|EHS81652.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-160]
Length = 180
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL S ++ + L+ + +
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-VIKSNLSNLDLEAQSEVYKNNADRALKALSK---R 108
Query: 229 DGPFDYMSVTPPYT 242
D FD + + PPY
Sbjct: 109 DIQFDVIFLDPPYN 122
>gi|414175450|ref|ZP_11429854.1| RsmD family RNA methyltransferase [Afipia broomeae ATCC 49717]
gi|410889279|gb|EKS37082.1| RsmD family RNA methyltransferase [Afipia broomeae ATCC 49717]
Length = 184
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 8/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + + SP D+RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLRGRNIASPSSNDIRPTQDRLRESLFNILMHAYENP--IDGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FV+ + +L N+E G V+ ++ R T L A
Sbjct: 59 LGIEAVSRGAAFTLFVD-NGAEARALLRNNVEALGLGGVTKVYR-RDATNLGPAYPVE-- 114
Query: 229 DGPFDYMSVTPPY 241
PF + PPY
Sbjct: 115 --PFSLAFLDPPY 125
>gi|145219574|ref|YP_001130283.1| putative methyltransferase [Chlorobium phaeovibrioides DSM 265]
gi|145205738|gb|ABP36781.1| putative methyltransferase [Chlorobium phaeovibrioides DSM 265]
Length = 188
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 12/168 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+Q++ G R +K+ + DVRP VK + FD L + + LDL++G GS
Sbjct: 1 MQIIAGAYRGRKIRTTSSQDVRPCSSRVKKSLFDTLLHR----FTFEEAKVLDLFAGFGS 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EA+SRG + V FV+ P + ++ E D SI V FL R
Sbjct: 57 LGFEALSRGAASVTFVDRHPESLRSLRETAREL-ALEDQVSIIDEDVPAFLCRYS----- 110
Query: 229 DGPFDYMSVTPPYTAVDYE-VVEYPLRTDMLDTCGCLVKIKDRRFGRT 275
G D + PPY+ DY ++E + D L G L+ R G T
Sbjct: 111 -GEADLVFCDPPYSWQDYNGLIESIMDEDGLSEDGFLLIEHSARLGLT 157
>gi|402574121|ref|YP_006623464.1| RsmD family RNA methyltransferase [Desulfosporosinus meridiei DSM
13257]
gi|402255318|gb|AFQ45593.1| RNA methyltransferase, RsmD family [Desulfosporosinus meridiei DSM
13257]
Length = 183
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 12/133 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R ++L + +G+ RP + VKGA F +L + R LDL++GTG+
Sbjct: 1 MRIIAGEMRGRQLKAVEGIHTRPTSDKVKGAIFSVLGE------KVINSRVLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG E VE + + V+ NL G + +H + F++R V
Sbjct: 55 LAIEALSRGSREAVLVEKN-YDAYQVIQRNLSLLGVAGKTKLHLMDAFKFIDRYPNEV-- 111
Query: 229 DGPFDYMSVTPPY 241
F+ + + PPY
Sbjct: 112 ---FNLIFLDPPY 121
>gi|255659780|ref|ZP_05405189.1| RNA methyltransferase, RsmD family [Mitsuokella multacida DSM
20544]
gi|260847851|gb|EEX67858.1| RNA methyltransferase, RsmD family [Mitsuokella multacida DSM
20544]
Length = 190
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 30/185 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +L +PKG RP + +K + F+IL S + + LD+++GTG+
Sbjct: 1 MRIITGSARGCRLKTPKGQATRPTSDRIKESLFNILGS------KVYGRKVLDIFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + FV+ + ++ N T D +++H V L R EQ
Sbjct: 55 LGLEALSRGAASACFVDQ---ATAALIRENAVHTRLQDRATVHGGDVFAQLARFEQ---G 108
Query: 229 DGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDR 270
F+ + PPY +E VVE+ + + L + +R
Sbjct: 109 GASFNLIFCDPPYHKGLFERALTFFDESAVLAHDGILVVEHGADENTMPELAKLSCVLNR 168
Query: 271 RFGRT 275
R+G T
Sbjct: 169 RYGHT 173
>gi|27382605|ref|NP_774134.1| hypothetical protein bll7494 [Bradyrhizobium japonicum USDA 110]
gi|27355777|dbj|BAC52759.1| bll7494 [Bradyrhizobium japonicum USDA 110]
Length = 185
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 8/161 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + L SP D+RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNLASPSSRDIRPTADRLRESVFNILVHAYDDP--IEDARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA SRG V FV+ + +L N+E G V+ ++ R T L A
Sbjct: 59 LGIEASSRGAKFVLFVD-NGAEARALLRNNVESLGLGGVTKVYR-RDATDLGPAHPVE-- 114
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKD 269
PF + + PPY E LR T G L+ +++
Sbjct: 115 --PFSLVFLDPPYGRGLAEKALVSLRDGGWLTPGALLVVEE 153
>gi|399073738|ref|ZP_10750645.1| RNA methyltransferase, RsmD family [Caulobacter sp. AP07]
gi|398041254|gb|EJL34326.1| RNA methyltransferase, RsmD family [Caulobacter sp. AP07]
Length = 187
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 5/134 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R K + +P G RP + + A F+IL+ A P L R +DL++G+G+
Sbjct: 1 MRIVSGQYRGKAIATPPGDTTRPTSDRARQAVFNILEHAAWAP-PLHGARVIDLFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + FVE D + N++ + +H R T L G
Sbjct: 60 LGLEALSRGAAFCLFVETDD-AARGAIRENVDAFSLFGQTRVHR-RDATDLGLPPASAG- 116
Query: 229 DGPFDYMSVTPPYT 242
GPF+ + PPY
Sbjct: 117 -GPFNLAFLDPPYA 129
>gi|386398427|ref|ZP_10083205.1| RNA methyltransferase, RsmD family [Bradyrhizobium sp. WSM1253]
gi|385739053|gb|EIG59249.1| RNA methyltransferase, RsmD family [Bradyrhizobium sp. WSM1253]
Length = 184
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 8/163 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + L SP D+RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNLASPSSRDIRPTADRLRESVFNILVHAYDDP--IADARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA SRG V FV+ + +L N+E G V+ ++ R T L A
Sbjct: 59 LGIEASSRGAKFVLFVD-NGAEARALLRNNVETLGLGGVTKVYR-RDATDLGPAHPVE-- 114
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKDRR 271
PF + + PPY E LR T G L+ +++ +
Sbjct: 115 --PFSLVFLDPPYGKGFAEKALASLRDGGWLTPGALLVVEEAK 155
>gi|367473023|ref|ZP_09472593.1| putative methyltransferase [Bradyrhizobium sp. ORS 285]
gi|365274707|emb|CCD85061.1| putative methyltransferase [Bradyrhizobium sp. ORS 285]
Length = 184
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 8/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + + SP D+RP + ++ A F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRSIASPASRDIRPTQDRLREALFNILVHAYDNP--IEGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ + +L N+E G V+ ++ R T L A
Sbjct: 59 LGIEAVSRGAEFTLFVD-NGAEARALLRNNVEALGLGGVTKVYR-RDATNLGPAHPVE-- 114
Query: 229 DGPFDYMSVTPPY 241
PF + + PPY
Sbjct: 115 --PFALVFLDPPY 125
>gi|365882267|ref|ZP_09421522.1| putative methyltransferase [Bradyrhizobium sp. ORS 375]
gi|365289430|emb|CCD94053.1| putative methyltransferase [Bradyrhizobium sp. ORS 375]
Length = 184
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 8/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + + SP D+RP + ++ A F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNIASPASRDIRPTQDRLREALFNILVHAYDNP--IDGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ + +L N+E G V+ ++ R T L A
Sbjct: 59 LGIEAVSRGAEFTLFVD-NGAEARALLRNNVEALGLGGVTKVYR-RDATNLGPAHPVE-- 114
Query: 229 DGPFDYMSVTPPY 241
PF + + PPY
Sbjct: 115 --PFALVFLDPPY 125
>gi|222147688|ref|YP_002548645.1| hypothetical protein Avi_0907 [Agrobacterium vitis S4]
gi|221734676|gb|ACM35639.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 186
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK +RP ++ + + F+IL A P L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRSLAAPKTDAIRPTIDRTRESLFNILMHA--HPECLDGTRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
+G+EA+SRGC FVE ++V L W +D +H R + A V
Sbjct: 59 IGLEALSRGCRSALFVE------NSVEGRGLLWEN-IDNLGLHG-RAKILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPY 241
PF + PPY
Sbjct: 111 STMEPFHLLFADPPY 125
>gi|392426885|ref|YP_006467879.1| RNA methyltransferase, RsmD family [Desulfosporosinus acidiphilus
SJ4]
gi|391356848|gb|AFM42547.1| RNA methyltransferase, RsmD family [Desulfosporosinus acidiphilus
SJ4]
Length = 186
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 12/133 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R + L + +GM RP + VKGA F++L ++ R LDL+SGTG+
Sbjct: 1 MRIIAGEMRGRILKAVEGMMTRPTSDKVKGAIFNVLGD------RVQDARVLDLFSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ EA+SRG E VE NV+ N++ G + + V +LE
Sbjct: 55 LAFEALSRGAREAVLVE-KSHNAHNVIRENMDRLGIGSKTKVLLVDAFKYLEN-----NP 108
Query: 229 DGPFDYMSVTPPY 241
D F+ + + PPY
Sbjct: 109 DEVFNLIFLDPPY 121
>gi|15924114|ref|NP_371648.1| methyltransferase [Staphylococcus aureus subsp. aureus Mu50]
gi|15926708|ref|NP_374241.1| hypothetical protein SA0972 [Staphylococcus aureus subsp. aureus
N315]
gi|21282735|ref|NP_645823.1| hypothetical protein MW1006 [Staphylococcus aureus subsp. aureus
MW2]
gi|49485961|ref|YP_043182.1| methylase [Staphylococcus aureus subsp. aureus MSSA476]
gi|57651733|ref|YP_185997.1| hypothetical protein SACOL1133 [Staphylococcus aureus subsp. aureus
COL]
gi|87161982|ref|YP_493721.1| hypothetical protein SAUSA300_1023 [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|148267616|ref|YP_001246559.1| methyltransferase [Staphylococcus aureus subsp. aureus JH9]
gi|150393671|ref|YP_001316346.1| methyltransferase [Staphylococcus aureus subsp. aureus JH1]
gi|151221199|ref|YP_001332021.1| hypothetical protein NWMN_0987 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156979446|ref|YP_001441705.1| hypothetical protein SAHV_1115 [Staphylococcus aureus subsp. aureus
Mu3]
gi|161509300|ref|YP_001574959.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|221140477|ref|ZP_03564970.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus str. JKD6009]
gi|253316754|ref|ZP_04839967.1| hypothetical protein SauraC_11535 [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|253731734|ref|ZP_04865899.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|253733642|ref|ZP_04867807.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus TCH130]
gi|255005910|ref|ZP_05144511.2| hypothetical protein SauraM_05555 [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257425175|ref|ZP_05601601.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257427838|ref|ZP_05604236.1| methyltransferase [Staphylococcus aureus subsp. aureus 65-1322]
gi|257430473|ref|ZP_05606855.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257433175|ref|ZP_05609533.1| methyltransferase [Staphylococcus aureus subsp. aureus E1410]
gi|257436074|ref|ZP_05612121.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus M876]
gi|257795146|ref|ZP_05644125.1| RNA methyltransferase [Staphylococcus aureus A9781]
gi|258407146|ref|ZP_05680295.1| conserved hypothetical protein [Staphylococcus aureus A9763]
gi|258421763|ref|ZP_05684684.1| RsmD family RNA methyltransferase [Staphylococcus aureus A9719]
gi|258436128|ref|ZP_05689111.1| site-specific DNA-methyltransferase [Staphylococcus aureus A9299]
gi|258443383|ref|ZP_05691726.1| conserved hypothetical protein [Staphylococcus aureus A8115]
gi|258444994|ref|ZP_05693311.1| RsmD family RNA methyltransferase [Staphylococcus aureus A6300]
gi|258449831|ref|ZP_05697929.1| RsmD family RNA methyltransferase [Staphylococcus aureus A6224]
gi|258451930|ref|ZP_05699946.1| RsmD family RNA methyltransferase [Staphylococcus aureus A5948]
gi|258454930|ref|ZP_05702893.1| RsmD family RNA methyltransferase [Staphylococcus aureus A5937]
gi|262048708|ref|ZP_06021590.1| hypothetical protein SAD30_1538 [Staphylococcus aureus D30]
gi|262052219|ref|ZP_06024425.1| hypothetical protein SA930_0910 [Staphylococcus aureus 930918-3]
gi|269202736|ref|YP_003282005.1| hypothetical protein SAAV_1090 [Staphylococcus aureus subsp. aureus
ED98]
gi|282894151|ref|ZP_06302382.1| RsmD family RNA methyltransferase [Staphylococcus aureus A8117]
gi|282910699|ref|ZP_06318502.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282913899|ref|ZP_06321686.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
M899]
gi|282916373|ref|ZP_06324135.1| RNA methyltransferase, RsmD family protein [Staphylococcus aureus
subsp. aureus D139]
gi|282918822|ref|ZP_06326557.1| RNA methyltransferase, RsmD family protein [Staphylococcus aureus
subsp. aureus C427]
gi|282923944|ref|ZP_06331620.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus C101]
gi|282925308|ref|ZP_06332965.1| RsmD family RNA methyltransferase [Staphylococcus aureus A9765]
gi|282928646|ref|ZP_06336243.1| RsmD family RNA methyltransferase [Staphylococcus aureus A10102]
gi|283770184|ref|ZP_06343076.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp.
aureus H19]
gi|284024049|ref|ZP_06378447.1| hypothetical protein Saura13_05639 [Staphylococcus aureus subsp.
aureus 132]
gi|293500934|ref|ZP_06666785.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus 58-424]
gi|293509891|ref|ZP_06668600.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus M809]
gi|293526478|ref|ZP_06671163.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
M1015]
gi|294848114|ref|ZP_06788861.1| RsmD family RNA methyltransferase [Staphylococcus aureus A9754]
gi|295405928|ref|ZP_06815737.1| RsmD family RNA methyltransferase [Staphylococcus aureus A8819]
gi|296276074|ref|ZP_06858581.1| hypothetical protein SauraMR_06982 [Staphylococcus aureus subsp.
aureus MR1]
gi|297208239|ref|ZP_06924669.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297246398|ref|ZP_06930242.1| RsmD family RNA methyltransferase [Staphylococcus aureus A8796]
gi|300912316|ref|ZP_07129759.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH70]
gi|304381319|ref|ZP_07363972.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|379014316|ref|YP_005290552.1| hypothetical protein SAVC_04780 [Staphylococcus aureus subsp.
aureus VC40]
gi|384861718|ref|YP_005744438.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus str. JKD6008]
gi|384864350|ref|YP_005749709.1| methyltransferase small domain-containing protein [Staphylococcus
aureus subsp. aureus ECT-R 2]
gi|384867995|ref|YP_005748191.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH60]
gi|384869656|ref|YP_005752370.1| Site-specific DNA-methyltransferase (Adenine-specific)
[Staphylococcus aureus subsp. aureus T0131]
gi|385781351|ref|YP_005757522.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus 11819-97]
gi|386830659|ref|YP_006237313.1| putative methylase [Staphylococcus aureus subsp. aureus HO 5096
0412]
gi|387142735|ref|YP_005731128.1| putative methylase [Staphylococcus aureus subsp. aureus TW20]
gi|387150265|ref|YP_005741829.1| Ribosomal RNA small subunit methyltransferase D [Staphylococcus
aureus 04-02981]
gi|387780236|ref|YP_005755034.1| putative methylase [Staphylococcus aureus subsp. aureus LGA251]
gi|415689697|ref|ZP_11452925.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus CGS01]
gi|415691918|ref|ZP_11453984.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus CGS03]
gi|417648533|ref|ZP_12298357.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21189]
gi|417652161|ref|ZP_12301914.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21172]
gi|417655561|ref|ZP_12305271.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21193]
gi|417796256|ref|ZP_12443471.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21305]
gi|417799032|ref|ZP_12446184.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21310]
gi|417802004|ref|ZP_12449081.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21318]
gi|417889062|ref|ZP_12533161.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21195]
gi|417899708|ref|ZP_12543610.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21259]
gi|417901357|ref|ZP_12545233.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21266]
gi|418276771|ref|ZP_12891608.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21178]
gi|418312598|ref|ZP_12924107.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21334]
gi|418316553|ref|ZP_12927990.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21340]
gi|418317952|ref|ZP_12929367.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21232]
gi|418321883|ref|ZP_12933222.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus VCU006]
gi|418424261|ref|ZP_12997386.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS1]
gi|418427188|ref|ZP_13000203.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS2]
gi|418430099|ref|ZP_13003016.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS3a]
gi|418433058|ref|ZP_13005840.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS4]
gi|418436722|ref|ZP_13008527.1| hypothetical protein MQI_00943 [Staphylococcus aureus subsp. aureus
VRS5]
gi|418439600|ref|ZP_13011310.1| hypothetical protein MQK_00455 [Staphylococcus aureus subsp. aureus
VRS6]
gi|418442645|ref|ZP_13014249.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS7]
gi|418445710|ref|ZP_13017190.1| hypothetical protein MQO_00736 [Staphylococcus aureus subsp. aureus
VRS8]
gi|418448660|ref|ZP_13020054.1| hypothetical protein MQQ_01696 [Staphylococcus aureus subsp. aureus
VRS9]
gi|418451466|ref|ZP_13022802.1| hypothetical protein MQS_02465 [Staphylococcus aureus subsp. aureus
VRS10]
gi|418454541|ref|ZP_13025804.1| hypothetical protein MQU_01845 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|418457415|ref|ZP_13028620.1| hypothetical protein MQW_01876 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|418568100|ref|ZP_13132454.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21272]
gi|418571236|ref|ZP_13135475.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21283]
gi|418574623|ref|ZP_13138790.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21333]
gi|418578954|ref|ZP_13143049.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1114]
gi|418598423|ref|ZP_13161933.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21343]
gi|418639765|ref|ZP_13202006.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-3]
gi|418642550|ref|ZP_13204736.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-24]
gi|418644638|ref|ZP_13206778.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-55]
gi|418647725|ref|ZP_13209788.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-88]
gi|418649274|ref|ZP_13211302.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-91]
gi|418653110|ref|ZP_13215056.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-99]
gi|418655581|ref|ZP_13217432.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-105]
gi|418657836|ref|ZP_13219590.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-111]
gi|418662014|ref|ZP_13223572.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-122]
gi|418872061|ref|ZP_13426417.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-125]
gi|418875057|ref|ZP_13429319.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC93]
gi|418877962|ref|ZP_13432198.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1165]
gi|418880798|ref|ZP_13435017.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1213]
gi|418883725|ref|ZP_13437922.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1769]
gi|418886383|ref|ZP_13440532.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1150]
gi|418894575|ref|ZP_13448673.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1057]
gi|418903333|ref|ZP_13457374.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1770]
gi|418906060|ref|ZP_13460087.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC345D]
gi|418911730|ref|ZP_13465713.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG547]
gi|418914219|ref|ZP_13468191.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|418919970|ref|ZP_13473910.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC348]
gi|418928380|ref|ZP_13482266.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1612]
gi|418931108|ref|ZP_13484955.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1750]
gi|418933958|ref|ZP_13487782.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC128]
gi|418948384|ref|ZP_13500688.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-157]
gi|418954495|ref|ZP_13506455.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-189]
gi|418987945|ref|ZP_13535618.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1835]
gi|418990984|ref|ZP_13538645.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1096]
gi|419775204|ref|ZP_14301146.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CO-23]
gi|419784856|ref|ZP_14310617.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-M]
gi|421150722|ref|ZP_15610376.1| methyltransferase [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|422743487|ref|ZP_16797471.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus MRSA177]
gi|422745646|ref|ZP_16799585.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus MRSA131]
gi|424777716|ref|ZP_18204675.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CM05]
gi|424784950|ref|ZP_18211753.1| Ribosomal RNA small subunit methyltransferase D [Staphylococcus
aureus CN79]
gi|440705889|ref|ZP_20886641.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21282]
gi|440734571|ref|ZP_20914183.1| hypothetical protein SASA_05810 [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|443635748|ref|ZP_21119870.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21236]
gi|443640448|ref|ZP_21124437.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21196]
gi|448742009|ref|ZP_21723964.1| methyltransferase [Staphylococcus aureus KT/314250]
gi|13700924|dbj|BAB42220.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14246894|dbj|BAB57286.1| similar to methyltransferase [Staphylococcus aureus subsp. aureus
Mu50]
gi|21204173|dbj|BAB94871.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49244404|emb|CAG42832.1| putative methylase [Staphylococcus aureus subsp. aureus MSSA476]
gi|57285919|gb|AAW38013.1| conserved hypothetical protein TIGR00095 [Staphylococcus aureus
subsp. aureus COL]
gi|87127956|gb|ABD22470.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|147740685|gb|ABQ48983.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
JH9]
gi|149946123|gb|ABR52059.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
JH1]
gi|150373999|dbj|BAF67259.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156721581|dbj|BAF77998.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|160368109|gb|ABX29080.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|253724548|gb|EES93277.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|253728342|gb|EES97071.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus TCH130]
gi|257272151|gb|EEV04283.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257274679|gb|EEV06166.1| methyltransferase [Staphylococcus aureus subsp. aureus 65-1322]
gi|257278601|gb|EEV09220.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257281268|gb|EEV11405.1| methyltransferase [Staphylococcus aureus subsp. aureus E1410]
gi|257284356|gb|EEV14476.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus M876]
gi|257789118|gb|EEV27458.1| RNA methyltransferase [Staphylococcus aureus A9781]
gi|257841301|gb|EEV65746.1| conserved hypothetical protein [Staphylococcus aureus A9763]
gi|257842096|gb|EEV66524.1| RsmD family RNA methyltransferase [Staphylococcus aureus A9719]
gi|257848817|gb|EEV72802.1| site-specific DNA-methyltransferase [Staphylococcus aureus A9299]
gi|257851473|gb|EEV75412.1| conserved hypothetical protein [Staphylococcus aureus A8115]
gi|257856116|gb|EEV79034.1| RsmD family RNA methyltransferase [Staphylococcus aureus A6300]
gi|257856751|gb|EEV79654.1| RsmD family RNA methyltransferase [Staphylococcus aureus A6224]
gi|257860145|gb|EEV82977.1| RsmD family RNA methyltransferase [Staphylococcus aureus A5948]
gi|257862810|gb|EEV85575.1| RsmD family RNA methyltransferase [Staphylococcus aureus A5937]
gi|259159890|gb|EEW44928.1| hypothetical protein SA930_0910 [Staphylococcus aureus 930918-3]
gi|259163164|gb|EEW47724.1| hypothetical protein SAD30_1538 [Staphylococcus aureus D30]
gi|262075026|gb|ACY10999.1| hypothetical protein SAAV_1090 [Staphylococcus aureus subsp. aureus
ED98]
gi|269940618|emb|CBI48997.1| putative methylase [Staphylococcus aureus subsp. aureus TW20]
gi|282313916|gb|EFB44308.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus C101]
gi|282316632|gb|EFB47006.1| RNA methyltransferase, RsmD family protein [Staphylococcus aureus
subsp. aureus C427]
gi|282319813|gb|EFB50161.1| RNA methyltransferase, RsmD family protein [Staphylococcus aureus
subsp. aureus D139]
gi|282321967|gb|EFB52291.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
M899]
gi|282325304|gb|EFB55613.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282589685|gb|EFB94771.1| RsmD family RNA methyltransferase [Staphylococcus aureus A10102]
gi|282592584|gb|EFB97594.1| RsmD family RNA methyltransferase [Staphylococcus aureus A9765]
gi|282763637|gb|EFC03766.1| RsmD family RNA methyltransferase [Staphylococcus aureus A8117]
gi|283460331|gb|EFC07421.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp.
aureus H19]
gi|285816804|gb|ADC37291.1| Ribosomal RNA small subunit methyltransferase D [Staphylococcus
aureus 04-02981]
gi|290920550|gb|EFD97613.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
M1015]
gi|291095939|gb|EFE26200.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus 58-424]
gi|291467341|gb|EFF09858.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus M809]
gi|294824914|gb|EFG41336.1| RsmD family RNA methyltransferase [Staphylococcus aureus A9754]
gi|294969363|gb|EFG45383.1| RsmD family RNA methyltransferase [Staphylococcus aureus A8819]
gi|296886978|gb|EFH25881.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297176764|gb|EFH36024.1| RsmD family RNA methyltransferase [Staphylococcus aureus A8796]
gi|300886562|gb|EFK81764.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH70]
gi|302750947|gb|ADL65124.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus str. JKD6008]
gi|304340302|gb|EFM06243.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|312438500|gb|ADQ77571.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH60]
gi|312829517|emb|CBX34359.1| methyltransferase small domain protein [Staphylococcus aureus
subsp. aureus ECT-R 2]
gi|315130290|gb|EFT86277.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus CGS03]
gi|315196153|gb|EFU26510.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus CGS01]
gi|320141061|gb|EFW32908.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus MRSA131]
gi|320143118|gb|EFW34908.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus MRSA177]
gi|329313791|gb|AEB88204.1| Site-specific DNA-methyltransferase (Adenine-specific)
[Staphylococcus aureus subsp. aureus T0131]
gi|329725181|gb|EGG61670.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21172]
gi|329728779|gb|EGG65200.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21193]
gi|329730801|gb|EGG67180.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21189]
gi|334269755|gb|EGL88168.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21305]
gi|334274924|gb|EGL93230.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21310]
gi|334275767|gb|EGL94046.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21318]
gi|341844636|gb|EGS85848.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21259]
gi|341845196|gb|EGS86398.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21266]
gi|341853130|gb|EGS94012.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21195]
gi|344177338|emb|CCC87804.1| putative methylase [Staphylococcus aureus subsp. aureus LGA251]
gi|364522340|gb|AEW65090.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 11819-97]
gi|365174049|gb|EHM64449.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21178]
gi|365224498|gb|EHM65763.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus VCU006]
gi|365238243|gb|EHM79080.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21334]
gi|365240832|gb|EHM81591.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21340]
gi|365244644|gb|EHM85301.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21232]
gi|371978754|gb|EHO95995.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21333]
gi|371980782|gb|EHO97983.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21272]
gi|371980940|gb|EHO98137.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21283]
gi|374363013|gb|AEZ37118.1| hypothetical protein SAVC_04780 [Staphylococcus aureus subsp.
aureus VC40]
gi|374399780|gb|EHQ70916.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21343]
gi|375015663|gb|EHS09307.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-24]
gi|375016777|gb|EHS10412.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-3]
gi|375019822|gb|EHS13373.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-99]
gi|375025041|gb|EHS18451.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-55]
gi|375029435|gb|EHS22763.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-88]
gi|375029647|gb|EHS22972.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-91]
gi|375036332|gb|EHS29407.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-105]
gi|375037297|gb|EHS30339.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-122]
gi|375039945|gb|EHS32857.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-111]
gi|375367570|gb|EHS71521.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-125]
gi|375372383|gb|EHS76125.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-157]
gi|375372725|gb|EHS76450.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-189]
gi|377695576|gb|EHT19937.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1165]
gi|377695928|gb|EHT20285.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1057]
gi|377696981|gb|EHT21336.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1114]
gi|377715459|gb|EHT39649.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1769]
gi|377715945|gb|EHT40131.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1750]
gi|377719733|gb|EHT43903.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1835]
gi|377723106|gb|EHT47231.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1096]
gi|377725108|gb|EHT49223.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG547]
gi|377726565|gb|EHT50676.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1150]
gi|377731691|gb|EHT55744.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1213]
gi|377738292|gb|EHT62301.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1612]
gi|377742348|gb|EHT66333.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1770]
gi|377757721|gb|EHT81609.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|377765360|gb|EHT89210.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC345D]
gi|377766969|gb|EHT90793.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC348]
gi|377771102|gb|EHT94860.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC93]
gi|377771738|gb|EHT95492.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC128]
gi|383363700|gb|EID41028.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-M]
gi|383970888|gb|EID86978.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CO-23]
gi|385196051|emb|CCG15668.1| putative methylase [Staphylococcus aureus subsp. aureus HO 5096
0412]
gi|387719164|gb|EIK07116.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS3a]
gi|387719603|gb|EIK07545.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS2]
gi|387720848|gb|EIK08747.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS1]
gi|387725924|gb|EIK13515.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS4]
gi|387728571|gb|EIK16058.1| hypothetical protein MQI_00943 [Staphylococcus aureus subsp. aureus
VRS5]
gi|387731087|gb|EIK18427.1| hypothetical protein MQK_00455 [Staphylococcus aureus subsp. aureus
VRS6]
gi|387736696|gb|EIK23785.1| hypothetical protein MQO_00736 [Staphylococcus aureus subsp. aureus
VRS8]
gi|387738237|gb|EIK25290.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS7]
gi|387738336|gb|EIK25380.1| hypothetical protein MQQ_01696 [Staphylococcus aureus subsp. aureus
VRS9]
gi|387745438|gb|EIK32193.1| hypothetical protein MQS_02465 [Staphylococcus aureus subsp. aureus
VRS10]
gi|387746002|gb|EIK32747.1| hypothetical protein MQU_01845 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|387747973|gb|EIK34672.1| hypothetical protein MQW_01876 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|394329210|gb|EJE55325.1| methyltransferase [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|402346396|gb|EJU81486.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CM05]
gi|408423347|emb|CCJ10758.1| Similar to methyltransferase [Staphylococcus aureus subsp. aureus
ST228]
gi|408425337|emb|CCJ12724.1| Similar to methyltransferase [Staphylococcus aureus subsp. aureus
ST228]
gi|408427325|emb|CCJ14688.1| Similar to methyltransferase [Staphylococcus aureus subsp. aureus
ST228]
gi|408429312|emb|CCJ26477.1| Similar to methyltransferase [Staphylococcus aureus subsp. aureus
ST228]
gi|408431300|emb|CCJ18615.1| Similar to methyltransferase [Staphylococcus aureus subsp. aureus
ST228]
gi|408433294|emb|CCJ20579.1| Similar to methyltransferase [Staphylococcus aureus subsp. aureus
ST228]
gi|408435285|emb|CCJ22545.1| Similar to methyltransferase [Staphylococcus aureus subsp. aureus
ST228]
gi|408437270|emb|CCJ24513.1| Similar to methyltransferase [Staphylococcus aureus subsp. aureus
ST228]
gi|421956360|gb|EKU08689.1| Ribosomal RNA small subunit methyltransferase D [Staphylococcus
aureus CN79]
gi|436431599|gb|ELP28952.1| hypothetical protein SASA_05810 [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|436507655|gb|ELP43324.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21282]
gi|443405129|gb|ELS63739.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21196]
gi|443408807|gb|ELS67318.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21236]
gi|445547228|gb|ELY15499.1| methyltransferase [Staphylococcus aureus KT/314250]
Length = 180
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL S ++ + L+ + +
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-VIKSNLANLDLEAQSEVYKNNADRALKALSK---R 108
Query: 229 DGPFDYMSVTPPYT 242
D FD + + PPY
Sbjct: 109 DIQFDVIFLDPPYN 122
>gi|224476238|ref|YP_002633844.1| hypothetical protein Sca_0749 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222420845|emb|CAL27659.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 183
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 12/133 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLHEVSGI--------GLDLFAGSGG 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E+ FV+ + V ++ NL+ S ++ + L + +
Sbjct: 53 LGIEALSRGMDEMIFVDQNFKAVK-IIKNNLKNLDLTKQSEVYKNNADRAL---KALAKR 108
Query: 229 DGPFDYMSVTPPY 241
+ FD + + PPY
Sbjct: 109 EIQFDIIFLDPPY 121
>gi|90422425|ref|YP_530795.1| hypothetical protein RPC_0906 [Rhodopseudomonas palustris BisB18]
gi|90104439|gb|ABD86476.1| conserved hypothetical protein 95 [Rhodopseudomonas palustris
BisB18]
Length = 188
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + + SP D+RP + ++ + F+IL A G P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNIASPTSRDIRPTQDRLRESLFNILMHAYGNP--MLDARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG FV+ + +L N+E G V+ ++
Sbjct: 59 LGIEAVSRGAKFALFVD-NGAEARALLRNNVEALGLGGVTKVY 100
>gi|347761116|ref|YP_004868677.1| N6-adenine-specific methylase [Gluconacetobacter xylinus NBRC 3288]
gi|347580086|dbj|BAK84307.1| N6-adenine-specific methylase [Gluconacetobacter xylinus NBRC 3288]
Length = 192
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 7/134 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPAS-LRPGRWLDLYSGTG 167
++++ G+ R + L +P G RP + V+ A FD L A LR R LD ++GTG
Sbjct: 1 MRIIAGECRGRSLRAPAGHATRPTADRVRQALFDTLSHASWAGLDFLRGARVLDGFAGTG 60
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++G+EA+SRG + V FVE D + L N+ G +++ TVR L G
Sbjct: 61 ALGLEALSRGAASVCFVERDRAAL-RALRENIAGCG---MNARSTVRALDLLRLPP--AG 114
Query: 228 KDGPFDYMSVTPPY 241
G D + + PPY
Sbjct: 115 AAGSVDLVLLDPPY 128
>gi|303245504|ref|ZP_07331788.1| methyltransferase [Desulfovibrio fructosovorans JJ]
gi|302493353|gb|EFL53215.1| methyltransferase [Desulfovibrio fructosovorans JJ]
Length = 202
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 92/197 (46%), Gaps = 34/197 (17%)
Query: 109 LQVLGGK--ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSG 165
++V+ G+ RR K++ G+ RP V+ A F +L + ++ PG R LDL++G
Sbjct: 3 MRVIAGRFGGRRIKVVDAVGL--RPATGRVREALFSMLAAR----EAIFPGARVLDLFAG 56
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
GSVGIEA+SRG FVE +P V+ +L NL G +S VE + RA
Sbjct: 57 AGSVGIEALSRGADFCLFVEKNP-AVAKMLRENLRGLGL---ASGEAKVVEADVARALPR 112
Query: 226 VGKDGPFDYMSVTPPY--------------------TAVDYEVVEYPLRTDMLDTCGCLV 265
+ + PFD +++ PPY V +E R +D L
Sbjct: 113 LAET-PFDIVAIDPPYGHDLLPPTLAALVGSGLLAPDGVIAAEIEAGARLAPVDVPESLA 171
Query: 266 KIKDRRFGRTHLAIYGP 282
+ DR +G+T + ++ P
Sbjct: 172 CLTDRTYGQTRIILWTP 188
>gi|421074204|ref|ZP_15535244.1| methyltransferase [Pelosinus fermentans JBW45]
gi|392527710|gb|EIW50796.1| methyltransferase [Pelosinus fermentans JBW45]
Length = 189
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 10/134 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ KL +P+G+ RP + VK A F+IL + + LD+++GTG+
Sbjct: 1 MRIITGSAKGIKLSAPRGLGTRPTADRVKEAVFNILGDI------VVDAQVLDIFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG S F++ ++++ N + T + + I V L+R F G
Sbjct: 55 LGLEALSRGASAAVFIDSSIDSITSIK-ENAQRTKLIGQAEILKNDVIRALDR---FAGT 110
Query: 229 DGPFDYMSVTPPYT 242
FD + PPY
Sbjct: 111 GRSFDLIFCDPPYN 124
>gi|269797896|ref|YP_003311796.1| methyltransferase [Veillonella parvula DSM 2008]
gi|269094525|gb|ACZ24516.1| methyltransferase [Veillonella parvula DSM 2008]
Length = 183
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 22/162 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG A+ + +PKG+D RP ++ V+ + F++L + G + + LD++SGTG+
Sbjct: 1 MRIIGGTAKGHVIKAPKGLDTRPTLDRVRESVFNVLANRGIFGSDV-----LDIFSGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--- 225
V IEA+SRG + H V +D + +++ N + D R+E + Q
Sbjct: 56 VAIEALSRGAA--HAVAVD-FKTGKLILENAKHCRVDD-------RLEIIPRKLSQLKNY 105
Query: 226 -VGKDGPFDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGCLV 265
VG+ FDY+ PPY + ++ + D+L G L+
Sbjct: 106 MVGRQ--FDYIFSDPPYDNGFIQDTIDLVVNYDLLKPEGVLL 145
>gi|417904138|ref|ZP_12547968.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21269]
gi|341847961|gb|EGS89130.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21269]
Length = 180
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL S ++ + L+ + +
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-VIKSNLANLDLEAQSEVYKNNADRALKALSK---R 108
Query: 229 DGPFDYMSVTPPYT 242
D FD + + PPY
Sbjct: 109 DIQFDVIFLDPPYN 122
>gi|392946605|ref|ZP_10312247.1| RNA methyltransferase, RsmD family [Frankia sp. QA3]
gi|392289899|gb|EIV95923.1| RNA methyltransferase, RsmD family [Frankia sp. QA3]
Length = 190
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 11/143 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++GG A ++L P G RP + + F+ L + P + R DLY+G+G
Sbjct: 6 MTRIIGGTAGGRQLFVPTGRSTRPTSDRAREGLFNTLSTCVDLPGA----RVADLYAGSG 61
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG S V+ DP V L N+ G + + + R Q
Sbjct: 62 AVGLEALSRGASHALLVDHDPAAV-RALRRNVAALGLSGAEIL-----QAPVSRVVQNTS 115
Query: 228 KDGPFDYMSVTPPYTAVDYEVVE 250
D P+ M + PPY D E+ E
Sbjct: 116 GD-PYHVMFLDPPYAMSDLELGE 137
>gi|254418514|ref|ZP_05032238.1| putative methyltransferase [Brevundimonas sp. BAL3]
gi|196184691|gb|EDX79667.1| putative methyltransferase [Brevundimonas sp. BAL3]
Length = 187
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 7/134 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + + +++P+G RP + + A F++L+ A SL R +DLY+G+G+
Sbjct: 1 MRIVAGSLKGRAIVAPEGQGTRPTSDRARQAVFNVLEHAA-WAESLNGARVIDLYAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EAISRG FVE D + N + G + + +H R G
Sbjct: 60 LGFEAISRGAGFCLFVETDDG-ARGAIRENADAYGVMGRTRVHRRSATDLGVRP----GS 114
Query: 229 DG-PFDYMSVTPPY 241
DG FD + PPY
Sbjct: 115 DGEAFDIAFLDPPY 128
>gi|384547307|ref|YP_005736560.1| methyltransferase [Staphylococcus aureus subsp. aureus ED133]
gi|416839760|ref|ZP_11903118.1| methyltransferase [Staphylococcus aureus O11]
gi|416847343|ref|ZP_11907077.1| methyltransferase [Staphylococcus aureus O46]
gi|417895756|ref|ZP_12539734.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21235]
gi|298694356|gb|ADI97578.1| probable methyltransferase [Staphylococcus aureus subsp. aureus
ED133]
gi|323440672|gb|EGA98382.1| methyltransferase [Staphylococcus aureus O11]
gi|323442385|gb|EGB00015.1| methyltransferase [Staphylococcus aureus O46]
gi|341841433|gb|EGS82894.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21235]
Length = 180
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 16/136 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
+GIEA+SRG +V FV+ + V + I NL+ +V + R L +
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVKVIKSNIANLDLEAQSEVYKNNADRALKALSK----- 107
Query: 227 GKDGPFDYMSVTPPYT 242
+D FD + + PPY
Sbjct: 108 -RDIQFDVIFLDPPYN 122
>gi|418630667|ref|ZP_13193144.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU128]
gi|374836875|gb|EHS00449.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU128]
Length = 180
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 13/158 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLYDVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG ++ FV+ + V V+ NL + + ++ + L + +
Sbjct: 53 LGIEALSRGMDKMIFVDQNFKAVK-VIKANLNQLDLMSQAEVYKNNADRAL---KALAKR 108
Query: 229 DGPFDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLV 265
+ FD + + PPY + E + ++L G +V
Sbjct: 109 EVQFDVIFLDPPYNKGLINEAISRIAEFNLLKENGIIV 146
>gi|154251099|ref|YP_001411923.1| putative methyltransferase [Parvibaculum lavamentivorans DS-1]
gi|154155049|gb|ABS62266.1| putative methyltransferase [Parvibaculum lavamentivorans DS-1]
Length = 189
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG R + + +PKG VRP + + A F+IL A +L R LDL++GTG+
Sbjct: 1 MRIVGGVHRGRAIAAPKGDIVRPTSDRTREALFNILAHADFGEFTLEGARVLDLFAGTGA 60
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG S FV+ D + NLE G + ++ R G
Sbjct: 61 LGLEALSRGASFALFVD-DHAESRGAIRENLEHLGLNGNAKLYKRDATKLGPRP----GS 115
Query: 229 DGP-FDYMSVTPPY 241
GP F + PPY
Sbjct: 116 VGPAFTLLFADPPY 129
>gi|88657736|ref|YP_507034.1| putative methyltransferase [Ehrlichia chaffeensis str. Arkansas]
gi|88599193|gb|ABD44662.1| putative methyltransferase [Ehrlichia chaffeensis str. Arkansas]
Length = 183
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 73/135 (54%), Gaps = 12/135 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+L++ GK R +++ S K + RP M +++ + F+I+ S S++ + LDL+ G+G
Sbjct: 1 MLRITSGKYRGRRIFSDKLLSARPAMSIIRESIFNIILSR----MSIQGCKILDLFCGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
S+ EA+SRG V V+++ + +S V + E+ G ++ ++ VE +Q
Sbjct: 57 SLSFEALSRGAESVLLVDINHYNLSLVKRTS-EYLGVVNNVTLMCCDVEKLPLATDQ--- 112
Query: 228 KDGPFDYMSVTPPYT 242
+D + V PPYT
Sbjct: 113 ----YDIVFVDPPYT 123
>gi|225874462|ref|YP_002755921.1| methyltransferase [Acidobacterium capsulatum ATCC 51196]
gi|225792429|gb|ACO32519.1| putative methyltransferase [Acidobacterium capsulatum ATCC 51196]
Length = 186
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 11/142 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ R + L +P G RP + ++ F++L + +LDLY+G+G+
Sbjct: 1 MRVIAGQYRSRPLTAPPGQGTRPTSDRLRETLFNVLAP------RIEGAIFLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIEA+SRG E FV+ + NL L + S + + + + G+
Sbjct: 55 VGIEALSRGAREAIFVD-QAAPAQKAIRANLSA---LQIRSHYALEARSAAAVVGRLAGQ 110
Query: 229 DGPFDYMSVTPPYTAVD-YEVV 249
P D + + PPY VD YE V
Sbjct: 111 GSPVDIVFLDPPYDRVDEYEKV 132
>gi|160892739|ref|ZP_02073529.1| hypothetical protein CLOL250_00270 [Clostridium sp. L2-50]
gi|156865780|gb|EDO59211.1| RNA methyltransferase, RsmD family [Clostridium sp. L2-50]
Length = 185
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 16/136 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +L + MD RP + +K F+I+ L +LDL+SG+G+
Sbjct: 1 MRVIAGTARSLRLETIDTMDTRPTTDRIKETLFNIISR------ELPDCTFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT---VRVETFLERAEQF 225
+ IEA+SRG + VE + V + + NLE+TG D + + T V LER+
Sbjct: 55 IAIEALSRGAKQAVLVEQNRKAV-DCINRNLEFTGLKDKARVITGDCVAAIDSLERSGLV 113
Query: 226 VGKDGPFDYMSVTPPY 241
FD + + PPY
Sbjct: 114 ------FDIIFMDPPY 123
>gi|402846680|ref|ZP_10894989.1| RNA methyltransferase, RsmD family [Porphyromonas sp. oral taxon
279 str. F0450]
gi|402267372|gb|EJU16767.1| RNA methyltransferase, RsmD family [Porphyromonas sp. oral taxon
279 str. F0450]
Length = 192
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK +R++ PK + RP + K F++LQ + LDL+SGTGS
Sbjct: 1 MRIIGGKYKRRRFDVPKSFNARPTTDFAKENLFNVLQYY----INFEDATALDLFSGTGS 56
Query: 169 VGIEAISRGCSEVHFVEM--DPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
+ E ISRGCS V +E + + + L+ G L V R +L+ ++
Sbjct: 57 ISAELISRGCSRVIALEQRREHALFIRSIARELKEEGRLQVLQSDVFR---YLQTSK--- 110
Query: 227 GKDGPFDYMSVTPPY 241
G FD++ PPY
Sbjct: 111 GGRSQFDFIFADPPY 125
>gi|390451489|ref|ZP_10237063.1| putative methyltransferase [Nitratireductor aquibiodomus RA22]
gi|389660913|gb|EIM72555.1| putative methyltransferase [Nitratireductor aquibiodomus RA22]
Length = 184
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 8/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK +RP + + A F+I + L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRTLAAPKSDAIRPTTDRTRQALFNIFEHR--HAGRLENARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + F+E + ++ N+E G + I E VG
Sbjct: 59 LGLEALSRGSAFALFIE-EAAAARALIRTNVENFGLQGRAKIFRRDATRIGE-----VGT 112
Query: 229 DGPFDYMSVTPPY 241
PFD + PPY
Sbjct: 113 IQPFDVVLADPPY 125
>gi|392971745|ref|ZP_10337138.1| putative site-specific DNA-methyltransferase (adenine specific)
[Staphylococcus equorum subsp. equorum Mu2]
gi|392510284|emb|CCI60426.1| putative site-specific DNA-methyltransferase (adenine specific)
[Staphylococcus equorum subsp. equorum Mu2]
Length = 180
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 84/160 (52%), Gaps = 17/160 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + K L S +G + RP M+ VK F+ L G LDLY+G+GS
Sbjct: 1 MRVISGIHKSKALESIEGRNTRPTMDKVKEGIFNSLHEVSGI--------GLDLYAGSGS 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG ++ FV+ + V V+ NL+ L++ S T + +RA + + K
Sbjct: 53 LGIEALSRGIDKMIFVDQNFKAVK-VIKANLKS---LNIES-QTEVYKNNADRALKALSK 107
Query: 229 -DGPFDYMSVTPPYTA--VDYEVVEYPLRTDMLDTCGCLV 265
D FD + + PPY +D E ++ + ++L G +V
Sbjct: 108 RDIQFDVIFLDPPYEKGLID-EALKEIAKFNLLKESGIIV 146
>gi|431794623|ref|YP_007221528.1| RsmD family RNA methyltransferase [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430784849|gb|AGA70132.1| RNA methyltransferase, RsmD family [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 180
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 72/135 (53%), Gaps = 17/135 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R ++L + G++ RP + +KGA F++L+ + + LD++SGTG+
Sbjct: 1 MRIIAGDYRGQRLKAVPGINTRPTADKIKGAIFNVLRE------KVVDAKVLDMFSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF--LERAEQFV 226
+ +EA+SRG E +E + V+ NLE G V + + ++ F L R ++ +
Sbjct: 55 LALEALSRGAKEAILIE-KSRIAQRVIQENLEHLG---VQNAKLMEMDAFDYLARHQEEI 110
Query: 227 GKDGPFDYMSVTPPY 241
FD + + PPY
Sbjct: 111 -----FDLIFIDPPY 120
>gi|258652100|ref|YP_003201256.1| methyltransferase [Nakamurella multipartita DSM 44233]
gi|258555325|gb|ACV78267.1| methyltransferase [Nakamurella multipartita DSM 44233]
Length = 189
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 19/140 (13%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G+ R ++L+ PKG+ RP E V+ A LQ+ GG L R LDL++GTG
Sbjct: 1 MTRIVAGRWRGRRLVVPKGVGTRPSAERVREALAGSLQATGG----LVGARVLDLWAGTG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH-----TVRVETFLERA 222
++G+E SRG S FVE D ++ + +V ++H T+ V A
Sbjct: 57 ALGLELASRGASSAVFVEKDRSALATLRT---------NVDTLHEDGGPTLTVLAADVTA 107
Query: 223 EQFVGK-DGPFDYMSVTPPY 241
+ GPFD + PPY
Sbjct: 108 PALTARLGGPFDIVLADPPY 127
>gi|386814240|ref|ZP_10101464.1| putative methyltransferase [planctomycete KSU-1]
gi|386403737|dbj|GAB64345.1| putative methyltransferase [planctomycete KSU-1]
Length = 180
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 12/126 (9%)
Query: 121 LLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTGSVGIEAISRGCS 179
L S KG RP+++ VKG+ F IL + + PG R +DLY+GTG++GIEA+SRG
Sbjct: 3 LCSVKGDKTRPILDRVKGSLFSIL-------SHVIPGSRIIDLYAGTGAIGIEALSRGAK 55
Query: 180 EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP 239
FVE + + V+ NLE T D + + V + E+ D + +P
Sbjct: 56 FCIFVEREKSAI-QVIKKNLETTKLQDKAQVLQYDVFEIVRYLEE---NKREVDLVLASP 111
Query: 240 PYTAVD 245
PY ++
Sbjct: 112 PYPCIE 117
>gi|381164814|ref|ZP_09874044.1| RNA methyltransferase, RsmD family [Saccharomonospora azurea
NA-128]
gi|379256719|gb|EHY90645.1| RNA methyltransferase, RsmD family [Saccharomonospora azurea
NA-128]
Length = 185
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 75/143 (52%), Gaps = 16/143 (11%)
Query: 108 LLQVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ G A + L + PKG RP E+V+ A F L++A L R LDLYSG+
Sbjct: 1 MTRIVAGLAGGRTLRVPPKG--TRPTTELVREALFSALEAAD----ELDGVRVLDLYSGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G++G+EA+SRG E FVE D +++L N+ G V + RVE+ +
Sbjct: 55 GALGLEALSRGAKEAVFVEAD-RTAADILRGNIANVGLGGV--VRQGRVESVVAEP---- 107
Query: 227 GKDGPFDYMSVTPPYTAVDYEVV 249
PFD + PPY AVD E +
Sbjct: 108 -GGTPFDLVFADPPY-AVDAETL 128
>gi|261367521|ref|ZP_05980404.1| RNA methyltransferase, RsmD family [Subdoligranulum variabile DSM
15176]
gi|282570303|gb|EFB75838.1| RNA methyltransferase, RsmD family [Subdoligranulum variabile DSM
15176]
Length = 182
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 66/135 (48%), Gaps = 16/135 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGT 166
++V+ G AR K L + G DV RP + VK A F +Q L PG R LDL++G+
Sbjct: 1 MRVIAGTARGKNLQALPGEDVTRPTINRVKEAMFSSVQF-------LVPGARVLDLFAGS 53
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G +GIEA+SRG FV+ P + ++ N + G S I FL
Sbjct: 54 GQLGIEALSRGAKSCVFVDRSPEAL-GIVTANCKAAGVERQSDIRHGEALAFLANIR--- 109
Query: 227 GKDGPFDYMSVTPPY 241
GPFD + + PP+
Sbjct: 110 ---GPFDLVLLDPPF 121
>gi|195941937|ref|ZP_03087319.1| hypothetical protein Bbur8_03561 [Borrelia burgdorferi 80a]
gi|387827122|ref|YP_005806404.1| putative methyltransferase [Borrelia burgdorferi N40]
gi|312149513|gb|ADQ29584.1| putative methyltransferase [Borrelia burgdorferi N40]
Length = 165
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 17/122 (13%)
Query: 122 LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEV 181
+ PK VRP+M +V+ A F I+ + ++LD+++GTG + +EA+SRG S
Sbjct: 1 MFPKNGSVRPVMSLVREAFFSIIFK------DIVNSKFLDVFAGTGIMSVEALSRGASLA 54
Query: 182 HFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG-KDGPFDYMSVTPP 240
H VE + + L+ N + G + F +RAE F+ KD +D++ + PP
Sbjct: 55 HLVECNRK-IKITLVENFSFVGEF---------YKFFFQRAEDFLSKKDLFYDFIYLDPP 104
Query: 241 YT 242
+
Sbjct: 105 FN 106
>gi|403046934|ref|ZP_10902403.1| N6-adenine-specific methylase [Staphylococcus sp. OJ82]
gi|402763630|gb|EJX17723.1| N6-adenine-specific methylase [Staphylococcus sp. OJ82]
Length = 180
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 84/160 (52%), Gaps = 17/160 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + K L S +G + RP M+ VK F+ L G LDLY+G+GS
Sbjct: 1 MRVISGIHKSKALESIEGRNTRPTMDKVKEGIFNSLHEVSGI--------GLDLYAGSGS 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG ++ FV+ + V V+ NL+ L++ S T + +RA + + K
Sbjct: 53 LGIEALSRGIDKMIFVDQNFKAVK-VIKANLKS---LNIES-QTEVYKNNADRALKALSK 107
Query: 229 -DGPFDYMSVTPPYTA--VDYEVVEYPLRTDMLDTCGCLV 265
D FD + + PPY +D E ++ + ++L G +V
Sbjct: 108 RDIQFDVIFLDPPYEKGLID-EALKEIAKFNLLKESGIIV 146
>gi|332298023|ref|YP_004439945.1| methyltransferase [Treponema brennaborense DSM 12168]
gi|332181126|gb|AEE16814.1| methyltransferase [Treponema brennaborense DSM 12168]
Length = 184
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 21/137 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG+ R + + P G+ +RP M+ ++ + F IL G +LDL+SG+G+
Sbjct: 1 MRITGGELRGRIIKCPDGV-IRPAMDRMRESVFAILGDLSG-------KSFLDLFSGSGT 52
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
+ IEA SRG + V VE D V+SNV + E + S H + VE F++R +
Sbjct: 53 IAIEAASRGAAHVELVEKDRIKTDTVLSNVSVTEKELGKKI---SCHFMAVELFMKRCKS 109
Query: 225 FVGKDGPFDYMSVTPPY 241
FD + PP+
Sbjct: 110 ------QFDLIFCDPPF 120
>gi|238019390|ref|ZP_04599816.1| hypothetical protein VEIDISOL_01254 [Veillonella dispar ATCC 17748]
gi|237864089|gb|EEP65379.1| hypothetical protein VEIDISOL_01254 [Veillonella dispar ATCC 17748]
Length = 183
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 94/193 (48%), Gaps = 38/193 (19%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG A+ + +PKG+D RP ++ V+ + F++L + G + LD++SGTG+
Sbjct: 1 MRIIGGTAKGHTIKAPKGVDTRPTLDRVRESVFNVLSNRG-----IFGTHVLDIFSGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--- 225
V IEA+SRG + H V +D + +++ N + D R+E + Q
Sbjct: 56 VAIEALSRGAA--HAVAVD-FKTGKLILENAKHCHVED-------RLEIIPRKLSQLKNY 105
Query: 226 -VGKDGPFDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGCLVK----------------I 267
+G+ FDY+ PPY + ++ + D+L G L+ I
Sbjct: 106 IMGQQ--FDYIFSDPPYENGFIQDTIDLVVTYDLLKPDGVLLLEHHKDEAFTLPESWECI 163
Query: 268 KDRRFGRTHLAIY 280
K+++FG T ++ +
Sbjct: 164 KEQKFGYTMVSYF 176
>gi|419808704|ref|ZP_14333603.1| DNA methylase [Mycoplasma agalactiae 14628]
gi|390605609|gb|EIN14987.1| DNA methylase [Mycoplasma agalactiae 14628]
Length = 182
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 28/164 (17%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++V+ GK R + L PK D+RP M+ V+ A F + LDL++G+G
Sbjct: 1 MIRVISGKYRHRLLNWPKSKDIRPTMDKVREAIF------SSIRMQIEGKIVLDLFAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV- 226
S+ IEA+S + VE D V + + +++++ ++ F A F+
Sbjct: 55 SMAIEAVSNYAMKAVAVEKDKEAVKII---------YENINALQINNIDVFNTNALAFLK 105
Query: 227 GKDG-PFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKD 269
K G FDY+ + PPY EY D+L+ C L+K+ +
Sbjct: 106 SKTGRVFDYIFLDPPYA-------EY----DLLNECIKLIKLNN 138
>gi|385817418|ref|YP_005853808.1| Methyltransferase [Lactobacillus amylovorus GRL1118]
gi|327183356|gb|AEA31803.1| Methyltransferase [Lactobacillus amylovorus GRL1118]
Length = 183
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 10/134 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L + K RP + VK + F+ L G LDLY+G+G+
Sbjct: 1 MRIISGKYAKRNLFTLKSNRTRPTSDKVKESLFNSLGQF------FNGGDVLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRGC V+++ S ++ N+ T + I+ +R L + F K
Sbjct: 55 LGIEAVSRGCDHASLVDINHAACS-IIKKNVALTKEENRFDIYNMRSSAAL---KLFAEK 110
Query: 229 DGPFDYMSVTPPYT 242
+ FD + + PPY
Sbjct: 111 ELKFDLVFLDPPYA 124
>gi|414160417|ref|ZP_11416685.1| RsmD family RNA methyltransferase [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410878315|gb|EKS26200.1| RsmD family RNA methyltransferase [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 183
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 12/133 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + K L S +G + RP + VK + F+ L G LDL++G+G+
Sbjct: 1 MRVISGQHKSKPLESLQGRNTRPTTDKVKESIFNTLHDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E+ FV+ + V V+ NL + + ++ + L + +
Sbjct: 53 LGIEALSRGMDEMIFVDQNFKAVK-VIKANLNSLDLMKQAEVYKNNADRAL---KALAKR 108
Query: 229 DGPFDYMSVTPPY 241
D FD + + PPY
Sbjct: 109 DIQFDLIFLDPPY 121
>gi|229820096|ref|YP_002881622.1| methyltransferase [Beutenbergia cavernae DSM 12333]
gi|229566009|gb|ACQ79860.1| methyltransferase [Beutenbergia cavernae DSM 12333]
Length = 187
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 11/134 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G AR + L P RP + V+ A F L++ G + R LDLY+G+G
Sbjct: 1 MTRIVAGSARGRTLAVPAA-GTRPTTDRVREAVFSALEARG----QVADARVLDLYAGSG 55
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++G+EA SRG V VE D + + N + G V S+ RVE L R
Sbjct: 56 ALGLEAASRGAQSVLLVESDRRAAA-ICRRNADTLGLSGVVSVRAARVEQLLRRPAPHA- 113
Query: 228 KDGPFDYMSVTPPY 241
FD + PPY
Sbjct: 114 ----FDLVLCDPPY 123
>gi|153941224|ref|YP_001391790.1| methyltransferase [Clostridium botulinum F str. Langeland]
gi|384462799|ref|YP_005675394.1| RsmD family RNA methyltransferase [Clostridium botulinum F str.
230613]
gi|152937120|gb|ABS42618.1| RNA methyltransferase, RsmD family [Clostridium botulinum F str.
Langeland]
gi|295319816|gb|ADG00194.1| RNA methyltransferase, RsmD family [Clostridium botulinum F str.
230613]
Length = 185
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 10/134 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+LSP+ RP ++ +K + F+I+Q+ + LD+++GTGS
Sbjct: 1 MRIISGSARGRKILSPQSSVTRPTLDRIKESIFNIIQN------QVYGSGVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG + V+ +L N++ F D+ + + L E+F K
Sbjct: 55 LGLEAASRGAKFSYLVDKSSETYP-LLRENIKNLKFEDLCKSFNMDAYSAL---EEFARK 110
Query: 229 DGPFDYMSVTPPYT 242
FD + + PPY
Sbjct: 111 SIVFDLIFIDPPYA 124
>gi|329851128|ref|ZP_08265885.1| RNA methyltransferase, RsmD family [Asticcacaulis biprosthecum C19]
gi|328839974|gb|EGF89546.1| RNA methyltransferase, RsmD family [Asticcacaulis biprosthecum C19]
Length = 191
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + L +P G + RP + + A F++L A P R +D+++G+G+
Sbjct: 1 MRVVGGEFKGRSLATPDGRNTRPTSDRAREAIFNVLAHADWAP-DFDGARVMDVFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EA+SRG + F+E D + N+E G + +H A Q +
Sbjct: 60 LGFEALSRGATFCLFIETDEG-ARGAIRDNVEAFGLFGTTRVHR-------RDATQLGVR 111
Query: 229 DGP----FDYMSVTPPY 241
GP FD + + PPY
Sbjct: 112 PGPKSEAFDLVFLDPPY 128
>gi|75676733|ref|YP_319154.1| hypothetical protein Nwi_2549 [Nitrobacter winogradskyi Nb-255]
gi|74421603|gb|ABA05802.1| Conserved hypothetical protein 95 [Nitrobacter winogradskyi Nb-255]
Length = 184
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 8/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + L SP +RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNLASPSTQQIRPTADRLRESLFNILVHAYDDPVA--DARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ + +L N+E G V+ ++ R T L A
Sbjct: 59 LGIEAVSRGAKFTLFVD-NGAEARALLRNNVEALGLGGVTKVYR-RDATNLGAAHPLA-- 114
Query: 229 DGPFDYMSVTPPY 241
PF + + PPY
Sbjct: 115 --PFSLVFLDPPY 125
>gi|401685013|ref|ZP_10816883.1| RNA methyltransferase, RsmD family [Streptococcus sp. BS35b]
gi|418974307|ref|ZP_13522219.1| RNA methyltransferase, RsmD family [Streptococcus oralis SK1074]
gi|383349211|gb|EID27157.1| RNA methyltransferase, RsmD family [Streptococcus oralis SK1074]
gi|400183218|gb|EJO17475.1| RNA methyltransferase, RsmD family [Streptococcus sp. BS35b]
Length = 179
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 13/134 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRK-AQAIIAENIQMTK--EVSKFQLLKMEA--ERALEHV-- 107
Query: 229 DGPFDYMSVTPPYT 242
+GPFD + + PPY
Sbjct: 108 NGPFDLVFLDPPYA 121
>gi|406983082|gb|EKE04331.1| hypothetical protein ACD_20C00086G0021 [uncultured bacterium]
Length = 185
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 102/198 (51%), Gaps = 21/198 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW--LDLYSGT 166
+ + GG +R+K+ + + +VRP V+ + F+I+QS L G LDL++G+
Sbjct: 1 MLITGGFLKRRKINTVESKEVRPTSSKVRESIFNIIQSNSDI---LHHGDAVVLDLFAGS 57
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G +G+EA SRG +V +VE +P VS +L NL +D I + + L+R E
Sbjct: 58 GILGLEAYSRGAKKVIYVEKNPNAVS-LLKENLAQFD-IDYELIVSDAILA-LDRFENI- 113
Query: 227 GKDGPFDYMSVTPPYTAVDYEVVEYPL----RTDMLDTCGCLVKIKDRRFGRTHLAI-YG 281
FD + + PPY + +++E L ++L+ G +V + ++ T +A+ G
Sbjct: 114 ----TFDLIFIDPPYAS---KLIESSLAKIKSNNLLNPDGIIVVEHNPKYNTTEIALNLG 166
Query: 282 PDWAQKKRKSEKKIPIVT 299
+ ++K+ + I I++
Sbjct: 167 YEVLREKKYGDTAITILS 184
>gi|374578024|ref|ZP_09651120.1| RNA methyltransferase, RsmD family [Bradyrhizobium sp. WSM471]
gi|374426345|gb|EHR05878.1| RNA methyltransferase, RsmD family [Bradyrhizobium sp. WSM471]
Length = 184
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 8/161 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + L SP D+RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNLASPSSRDIRPTADRLRESVFNILVHAYDDP--IADARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA SRG V FV+ + +L N+E G V+ ++ R T L A
Sbjct: 59 LGIEASSRGAKFVLFVD-NCAEARALLRNNVETLGLGGVTKVYR-RDATDLGPAHPV--- 113
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKD 269
PF + + PPY E LR T G L+ +++
Sbjct: 114 -EPFSLVFLDPPYGKGFAEKALASLRDGSWLTPGALLVVEE 153
>gi|417660078|ref|ZP_12309669.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU045]
gi|417909883|ref|ZP_12553616.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU037]
gi|420222061|ref|ZP_14726986.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH08001]
gi|420224923|ref|ZP_14729761.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH06004]
gi|420229260|ref|ZP_14733966.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH04003]
gi|329734402|gb|EGG70715.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU045]
gi|341652492|gb|EGS76280.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU037]
gi|394290092|gb|EJE33962.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH08001]
gi|394294326|gb|EJE38012.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH06004]
gi|394299026|gb|EJE42577.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH04003]
Length = 180
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 13/158 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLYDVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG ++ FV+ + V V+ NL + + ++ + L + +
Sbjct: 53 LGIEALSRGMDKMIFVDQNFKAVK-VIKANLNQLDLMSQAEVYKNNADRAL---KALAKR 108
Query: 229 DGPFDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLV 265
+ FD + + PPY + E + ++L G +V
Sbjct: 109 EIQFDVIFLDPPYNKGLINEAISRIAEFNLLKENGIIV 146
>gi|160913554|ref|ZP_02076245.1| hypothetical protein EUBDOL_00030 [Eubacterium dolichum DSM 3991]
gi|158434106|gb|EDP12395.1| RNA methyltransferase, RsmD family [Eubacterium dolichum DSM 3991]
Length = 189
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 88/190 (46%), Gaps = 28/190 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + + + +G RP + VK A F + G LDL++G+G+
Sbjct: 7 MRIVAGKFGSRVIQAVEGQTTRPTTDKVKEAIFSRI------GPYFDGGSILDLFAGSGA 60
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EAISRG V+M+ +S + N++ G D ++ + +T L + E+ +
Sbjct: 61 ISLEAISRGMEHAVLVDMNGKAISTI-TSNIKALGVRDACTVLKMDYKTALHKLEE---Q 116
Query: 229 DGPFDYMSVTPPY------TAVDY-----------EVVEYPLRTDML-DTCGCLVKIKDR 270
FD + + PPY + + Y +V+ L+ D+ D G L K+KD
Sbjct: 117 KQSFDVVFLDPPYKKQQISSILQYLDEHDMVKENGDVICESLKEDIFEDAVGSLQKVKDV 176
Query: 271 RFGRTHLAIY 280
+G T + Y
Sbjct: 177 TYGITRITYY 186
>gi|386714151|ref|YP_006180474.1| putative methyltransferase [Halobacillus halophilus DSM 2266]
gi|384073707|emb|CCG45200.1| putative methyltransferase [Halobacillus halophilus DSM 2266]
Length = 182
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 27/166 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + ++L S RP + VK A F + G+ LDL++G+G
Sbjct: 1 MRVIAGDFKGRQLKSVPTHQTRPTTDKVKEAVFHKI------GPFFDGGKALDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV----RVETF---LER 221
+GIEA+SRG S FV+ + + +IHT+ R E F +R
Sbjct: 55 LGIEALSRGVSSCIFVDQQQKAIQTIY------------ENIHTLDLTDRTEVFRTDAKR 102
Query: 222 AEQFVGKDG-PFDYMSVTPPYTAVDY-EVVEYPLRTDMLDTCGCLV 265
A + GK G FDY+ + PPY Y E++E L ++L G ++
Sbjct: 103 AMKAAGKRGLTFDYIFLDPPYKKFSYKELMEALLDYELLAEQGVII 148
>gi|349700729|ref|ZP_08902358.1| N6-adenine-specific methylase [Gluconacetobacter europaeus LMG
18494]
Length = 191
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 7/135 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASL-RPGRWLDLYSGTG 167
++++ G+ R + L +P G RP + V+ A FD L A L R R LD ++GTG
Sbjct: 1 MRIIAGECRGRTLHAPPGQATRPTADRVRQALFDTLAHASWAGMDLLRGARVLDGFAGTG 60
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++G+EA+SRG + FVE + + L N+ G + I + + R G
Sbjct: 61 ALGLEALSRGAATAVFVEQNRAAL-RALRENVTACGMDGRAMIRAMDMLRLPAR-----G 114
Query: 228 KDGPFDYMSVTPPYT 242
GP D + + PPY
Sbjct: 115 ASGPVDLIFLDPPYN 129
>gi|345022639|ref|ZP_08786252.1| hypothetical protein OTW25_15186 [Ornithinibacillus scapharcae
TW25]
Length = 190
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + ++L + G + RP + VK A F +L G LDL++G+GS
Sbjct: 1 MRVVAGIHKGRQLKAVPGSNTRPTTDKVKEAVFQMLGP------FFEGGIALDLFAGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
+G+EA+SRG FV+ P + + I L+ G + R + F RA
Sbjct: 55 LGVEALSRGIDSCVFVDKHPKAIQTIRENITTLKLEG-----QVEIFRADAF--RALSAA 107
Query: 227 GKDG-PFDYMSVTPPYTAVDY-EVVEYPLRTDMLDTCGCL 264
K G FD + + PPY ++Y E++E ++ +++ G +
Sbjct: 108 AKRGLTFDLIFIDPPYGKINYLEILEIIVKEKLVNDDGII 147
>gi|383774359|ref|YP_005453426.1| putative methyltransferase [Bradyrhizobium sp. S23321]
gi|381362484|dbj|BAL79314.1| putative methyltransferase [Bradyrhizobium sp. S23321]
Length = 184
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 83/163 (50%), Gaps = 8/163 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + L +P D+RP + ++ + F+IL A P ++ R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNLAAPSSRDIRPTADRLRESVFNILVHAYEDP--IQDARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA SRG V FV+ + +L N+E G V+ ++ R T L A
Sbjct: 59 LGIEASSRGAKFVLFVD-NGAEARALLRNNVESLGLGGVTKVYR-RDATDLGPAHPVE-- 114
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKDRR 271
PF + + PPY E LR T G L+ +++ +
Sbjct: 115 --PFSLVFLDPPYGKGLAEKALASLRDGGWLTPGALLVVEEAK 155
>gi|378717484|ref|YP_005282373.1| putative RNA methyltransferase [Gordonia polyisoprenivorans VH2]
gi|375752187|gb|AFA73007.1| putative RNA methyltransferase [Gordonia polyisoprenivorans VH2]
Length = 199
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 72/146 (49%), Gaps = 11/146 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G+ + L P RP + V+ A F+IL + L LDLY+G+G
Sbjct: 1 MTRIIAGRHGGRPLKVPD-AGTRPTSDRVREAVFNILDA----RIDLEGAAILDLYAGSG 55
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL---ERAE- 223
++G+EA+SRG S FV+ + + V+ NL G +V + T V FL RAE
Sbjct: 56 ALGLEALSRGASSAVFVD-NRRRATAVVTANLRALGVAEVGRVITAPVSAFLAGPARAEV 114
Query: 224 -QFVGKDGPFDYMSVTPPYTAVDYEV 248
VG G FD + PPY D EV
Sbjct: 115 PARVGVTGRFDVIFSDPPYALTDDEV 140
>gi|416124445|ref|ZP_11595441.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909]
gi|418329247|ref|ZP_12940326.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
14.1.R1.SE]
gi|418613845|ref|ZP_13176843.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU118]
gi|418634577|ref|ZP_13196970.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU129]
gi|420175083|ref|ZP_14681528.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM061]
gi|420189676|ref|ZP_14695644.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM037]
gi|420192826|ref|ZP_14698683.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM023]
gi|420204071|ref|ZP_14709631.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM015]
gi|319401555|gb|EFV89765.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909]
gi|365230909|gb|EHM71984.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
14.1.R1.SE]
gi|374822511|gb|EHR86532.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU118]
gi|374836800|gb|EHS00377.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU129]
gi|394244369|gb|EJD89714.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM061]
gi|394260642|gb|EJE05451.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM023]
gi|394261011|gb|EJE05813.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM037]
gi|394274085|gb|EJE18510.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM015]
Length = 180
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 13/158 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLYDVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG ++ FV+ + V V+ NL + + ++ + L + +
Sbjct: 53 LGIEALSRGMDKMIFVDQNFKAVK-VIKANLNQLDLMSQAEVYKNNADRAL---KALAKR 108
Query: 229 DGPFDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLV 265
+ FD + + PPY + E + ++L G +V
Sbjct: 109 EVQFDVIFLDPPYNKGLINEAISRIAEFNLLKENGIIV 146
>gi|291299626|ref|YP_003510904.1| methyltransferase [Stackebrandtia nassauensis DSM 44728]
gi|290568846|gb|ADD41811.1| methyltransferase [Stackebrandtia nassauensis DSM 44728]
Length = 188
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 14/137 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++GG ++L +P+G + RP + V+ A F L++AG L LDLY+G+G
Sbjct: 1 MTRIIGGSLGGRRLSTPEGDNTRPTSDRVREALFGSLEAAG----VLDGAHVLDLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG + FVE + VL N+ G + ++T ++ L+
Sbjct: 57 AVGLEALSRGAASALFVESHA-ATARVLRRNIAALGVAAETDVNTAKLPAALK------- 108
Query: 228 KDGP--FDYMSVTPPYT 242
++ P FD + PPY
Sbjct: 109 QEPPRRFDLVFADPPYA 125
>gi|148253232|ref|YP_001237817.1| methyltransferase [Bradyrhizobium sp. BTAi1]
gi|146405405|gb|ABQ33911.1| Putative methyltransferase [Bradyrhizobium sp. BTAi1]
Length = 184
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 8/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + + SP D+RP + ++ A F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNIASPASRDIRPTQDRLREALFNILVHAYDDP--IDGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FV+ + +L N+E G V+ ++ R T L A
Sbjct: 59 LGIEAVSRGAAFTLFVD-NGAEARALLRNNVEALGLGGVTKVYR-RDATNLGPAYPVE-- 114
Query: 229 DGPFDYMSVTPPY 241
PF + + PPY
Sbjct: 115 --PFSLVFLDPPY 125
>gi|291278590|ref|YP_003495425.1| DNA methylase [Deferribacter desulfuricans SSM1]
gi|290753292|dbj|BAI79669.1| DNA methylase [Deferribacter desulfuricans SSM1]
Length = 176
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 17/137 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG+ R + L+SPK VRP + V+ A F L + + LDL++GTG+
Sbjct: 1 MRITGGELRGRSLISPKSSGVRPTSDKVRSAIFSKLYN------KVVDSYVLDLFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
GIEA+SRG V FV+++ + L+ N T F+ ++ + F + F
Sbjct: 55 FGIEALSRGAKFVTFVDINI----STLLKN---TSFIQNEKFEIIKSDVF----KAFKKL 103
Query: 229 DGPFDYMSVTPPYTAVD 245
+D + + PPY +D
Sbjct: 104 RIKYDIIFIDPPYGKID 120
>gi|269127643|ref|YP_003301013.1| methyltransferase [Thermomonospora curvata DSM 43183]
gi|268312601|gb|ACY98975.1| methyltransferase [Thermomonospora curvata DSM 43183]
Length = 186
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 68/139 (48%), Gaps = 10/139 (7%)
Query: 110 QVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169
+V+ G AR ++L P G D RP + + F + G L R DL++G+G+V
Sbjct: 3 RVIAGTARGRRLAVPAGRDTRPTSDRAREGLF---ATVGALLGPLEGLRVADLFAGSGAV 59
Query: 170 GIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229
G+EA+SRG + VE P V V+ N+E G L + + RVE L R +
Sbjct: 60 GLEALSRGAACALLVESHPRAV-KVIRRNIETLG-LPGAHLVADRVERVLRRPPEE---- 113
Query: 230 GPFDYMSVTPPYTAVDYEV 248
P+D + + PPY D V
Sbjct: 114 -PYDLIFLDPPYALADEAV 131
>gi|146296796|ref|YP_001180567.1| putative methyltransferase [Caldicellulosiruptor saccharolyticus
DSM 8903]
gi|145410372|gb|ABP67376.1| putative methyltransferase [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length = 184
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 29/189 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + ++L S +RP + VK A F++L P D ++GTG+
Sbjct: 1 MRVISGQNKGRRLKSANIQGLRPTSDRVKEALFNMLS-----PFLNEEVVVADFFAGTGN 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIE +SRG EV FVE D V +V+ NL+ G + + + V FL K
Sbjct: 56 VGIEFLSRGVKEVVFVEKDERCV-HVIKENLKDLGLSERAKVFKTDVLRFLR------SK 108
Query: 229 DGP-FDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGCLVK---------------IKDRR 271
P FD + + PPY + E +E L+ + + G +V ++ R
Sbjct: 109 HCPIFDIIFLDPPYKSTYAAECIEEILKNNKISQNGLIVVESNLDFNFESAKLTILRQRE 168
Query: 272 FGRTHLAIY 280
+G T + I+
Sbjct: 169 YGDTKITIF 177
>gi|336113675|ref|YP_004568442.1| methyltransferase [Bacillus coagulans 2-6]
gi|335367105|gb|AEH53056.1| methyltransferase [Bacillus coagulans 2-6]
Length = 198
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 85/191 (44%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + L + GM RP + VK A F+++ G LDLY+G+G
Sbjct: 1 MRVISGSQKGTVLKAVPGMGTRPTTDKVKEAIFNMIGP------YFEKGLGLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ D + V NL GF S ++ RA + + K
Sbjct: 55 LGIEALSRGMEKVIFVDKDIQALQTVQ-ANLAKCGFEGRSEVY----RNDAGRALKVLAK 109
Query: 229 DG-PFDYMSVTPPY-----TAV-------------DYEVVEYPLRTDMLDTCGCLVKIKD 269
G FD + + PPY TA+ Y V E+ + + G L K
Sbjct: 110 RGLAFDAVFLDPPYKKQKLTAMLEFISANGLLRENGYAVCEHDAGLALPEKAGNLHTYKT 169
Query: 270 RRFGRTHLAIY 280
++G T + IY
Sbjct: 170 AQYGITGITIY 180
>gi|316932710|ref|YP_004107692.1| methyltransferase [Rhodopseudomonas palustris DX-1]
gi|315600424|gb|ADU42959.1| methyltransferase [Rhodopseudomonas palustris DX-1]
Length = 187
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + L++P ++RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 1 MRVIGGRLRGRNLVAPSSREIRPTADRLRESVFNILMHAYENP--ILDARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA SRG V FV+ + +L N+E G VS ++
Sbjct: 59 LGIEASSRGAKFVLFVD-NGAEARALLRANVEALGLGGVSKVY 100
>gi|326382848|ref|ZP_08204538.1| methyltransferase [Gordonia neofelifaecis NRRL B-59395]
gi|326198438|gb|EGD55622.1| methyltransferase [Gordonia neofelifaecis NRRL B-59395]
Length = 181
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 12/134 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G+ R ++L P RP + V+ A F +L G L R LDLY+GTG
Sbjct: 1 MTRIIAGEFRGRRLAVPADT-TRPTSDRVREAVFSML----GSRMDLSEARVLDLYAGTG 55
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG + VE D + VL N+ G I VE+FL
Sbjct: 56 ALGIEAVSRGAASAVLVEADRR-AAGVLRDNVAVCGAAAQVRIVNRSVESFL------AA 108
Query: 228 KDGPFDYMSVTPPY 241
G FD + + PPY
Sbjct: 109 PTGTFDLIFLDPPY 122
>gi|27467741|ref|NP_764378.1| hypothetical protein SE0823 [Staphylococcus epidermidis ATCC 12228]
gi|57866626|ref|YP_188297.1| hypothetical protein SERP0714 [Staphylococcus epidermidis RP62A]
gi|282876424|ref|ZP_06285291.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
SK135]
gi|417645470|ref|ZP_12295372.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU144]
gi|417656585|ref|ZP_12306268.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU028]
gi|417913823|ref|ZP_12557485.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU109]
gi|418325024|ref|ZP_12936234.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU071]
gi|418411568|ref|ZP_12984836.1| RsmD family RNA methyltransferase [Staphylococcus epidermidis
BVS058A4]
gi|418603430|ref|ZP_13166815.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU041]
gi|418606302|ref|ZP_13169588.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU057]
gi|418609819|ref|ZP_13172953.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU065]
gi|418612993|ref|ZP_13176014.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU117]
gi|418616729|ref|ZP_13179653.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU120]
gi|418624902|ref|ZP_13187562.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU125]
gi|418626718|ref|ZP_13189314.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU126]
gi|418628993|ref|ZP_13191509.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU127]
gi|418663777|ref|ZP_13225285.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU081]
gi|419768668|ref|ZP_14294784.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-250]
gi|419772624|ref|ZP_14298655.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-K]
gi|420164705|ref|ZP_14671422.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM088]
gi|420169693|ref|ZP_14676272.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM070]
gi|420172850|ref|ZP_14679348.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM067]
gi|420177458|ref|ZP_14683794.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM057]
gi|420180241|ref|ZP_14686496.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM053]
gi|420182818|ref|ZP_14688951.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM049]
gi|420185192|ref|ZP_14691288.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM040]
gi|420194452|ref|ZP_14700263.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM021]
gi|420198594|ref|ZP_14704298.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM020]
gi|420198936|ref|ZP_14704620.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM031]
gi|420201346|ref|ZP_14706968.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM018]
gi|420206532|ref|ZP_14712042.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM008]
gi|420210663|ref|ZP_14716083.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM003]
gi|420214371|ref|ZP_14719650.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH05005]
gi|420217151|ref|ZP_14722335.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH05001]
gi|420218650|ref|ZP_14723709.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH04008]
gi|420226940|ref|ZP_14731713.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH05003]
gi|420231624|ref|ZP_14736269.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH051668]
gi|420234306|ref|ZP_14738871.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH051475]
gi|421607351|ref|ZP_16048597.1| hypothetical protein B440_03338 [Staphylococcus epidermidis
AU12-03]
gi|27315285|gb|AAO04420.1|AE016746_210 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|57637284|gb|AAW54072.1| conserved hypothetical protein TIGR00095 [Staphylococcus
epidermidis RP62A]
gi|281295449|gb|EFA87976.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
SK135]
gi|329732693|gb|EGG69042.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU144]
gi|329736246|gb|EGG72518.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU028]
gi|341654518|gb|EGS78262.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU109]
gi|365228930|gb|EHM70102.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU071]
gi|374406155|gb|EHQ77058.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU065]
gi|374407599|gb|EHQ78452.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU041]
gi|374408551|gb|EHQ79367.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU057]
gi|374411196|gb|EHQ81914.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU081]
gi|374817303|gb|EHR81488.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU117]
gi|374820807|gb|EHR84883.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU120]
gi|374826167|gb|EHR90075.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU125]
gi|374831262|gb|EHR95004.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU126]
gi|374834987|gb|EHR98618.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU127]
gi|383359251|gb|EID36681.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-K]
gi|383359494|gb|EID36917.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-250]
gi|394237133|gb|EJD82627.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM088]
gi|394241527|gb|EJD86941.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM067]
gi|394243300|gb|EJD88671.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM070]
gi|394247842|gb|EJD93084.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM057]
gi|394249281|gb|EJD94494.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM049]
gi|394251280|gb|EJD96379.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM053]
gi|394255226|gb|EJE00183.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM040]
gi|394264037|gb|EJE08745.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM020]
gi|394264554|gb|EJE09234.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM021]
gi|394272622|gb|EJE17072.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM031]
gi|394272951|gb|EJE17395.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM018]
gi|394275943|gb|EJE20308.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM003]
gi|394278371|gb|EJE22688.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM008]
gi|394283736|gb|EJE27901.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH05005]
gi|394290507|gb|EJE34362.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH05001]
gi|394292146|gb|EJE35916.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH04008]
gi|394297441|gb|EJE41038.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH05003]
gi|394302166|gb|EJE45614.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH051668]
gi|394304360|gb|EJE47765.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH051475]
gi|406657143|gb|EKC83536.1| hypothetical protein B440_03338 [Staphylococcus epidermidis
AU12-03]
gi|410893112|gb|EKS40903.1| RsmD family RNA methyltransferase [Staphylococcus epidermidis
BVS058A4]
Length = 180
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 13/158 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLYDVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG ++ FV+ + V V+ NL + + ++ + L + +
Sbjct: 53 LGIEALSRGMDKMIFVDQNFKAVK-VIKANLNQLDLMSQAEVYKNNADRAL---KALAKR 108
Query: 229 DGPFDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLV 265
+ FD + + PPY + E + ++L G +V
Sbjct: 109 EIQFDVIFLDPPYNKGLINEAISRIAEFNLLKENGIIV 146
>gi|408790479|ref|ZP_11202098.1| Ribosomal RNA small subunit methyltransferase D [Lactobacillus
florum 2F]
gi|408520203|gb|EKK20291.1| Ribosomal RNA small subunit methyltransferase D [Lactobacillus
florum 2F]
Length = 184
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 13/142 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG R ++L+ G RP + V+ A F+++ S R G +LDLY+G+G+
Sbjct: 1 MRIIGGTHRGQRLVPVAGRQTRPTTDKVREALFNMI------GPSFRGGHFLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV--LIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
V +EA+SRG + ++ V + NL+ T + ++ T E
Sbjct: 55 VALEALSRGVDQAVAIDRQYQAVKTMEKNAANLKIT-----KTKFQIKKMTVARAIEIMA 109
Query: 227 GKDGPFDYMSVTPPYTAVDYEV 248
G + FDY+ + PPY ++
Sbjct: 110 GSETQFDYVFLDPPYAQQQMQI 131
>gi|383649286|ref|ZP_09959692.1| DNA methylase [Streptomyces chartreusis NRRL 12338]
Length = 195
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 14/149 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGTAGGRRLAVPPGTGTRPTSDRAREGLFSTWQSLLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG VE D V V +V ++ E +AEQ +
Sbjct: 59 AVGLEALSRGAGHTLLVEADAKAVRTVRD---------NVKNLGLPGAEVRAGKAEQIIR 109
Query: 228 K---DGPFDYMSVTPPYTAVDYEVVEYPL 253
P+D + + PPY D ++ E L
Sbjct: 110 TTPPGDPYDLVFLDPPYAVTDDDLREILL 138
>gi|320108617|ref|YP_004184207.1| methyltransferase [Terriglobus saanensis SP1PR4]
gi|319927138|gb|ADV84213.1| methyltransferase [Terriglobus saanensis SP1PR4]
Length = 201
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 27/160 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG--RWLDLYSGT 166
++V+ G R + L++P G RP + ++ F++L +LR R+ DLY+GT
Sbjct: 4 VRVIAGTYRSRPLVAPPGTATRPTSDRLRETLFNVL--------ALRIAGTRFADLYAGT 55
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR---VETFLERAE 223
G+VGIEAISRG V F E + ++ + NL+ LD+ S +T+ T L+R
Sbjct: 56 GAVGIEAISRGAEHVFFSETNAKALTAIR-ANLKS---LDLRSGYTLEPAGTATLLKR-- 109
Query: 224 QFVGKDGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGC 263
V + D + + PPY E EY T L T G
Sbjct: 110 -IVKQGNVLDVVFLDPPYD----EAEEY---TRTLSTLGS 141
>gi|164688646|ref|ZP_02212674.1| hypothetical protein CLOBAR_02291 [Clostridium bartlettii DSM
16795]
gi|164603059|gb|EDQ96524.1| RNA methyltransferase, RsmD family [Clostridium bartlettii DSM
16795]
Length = 165
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR KL +PK DVRP + VK + F+I+ + LDL++GTGS
Sbjct: 1 MRVISGKARGLKLNTPKNEDVRPTTDRVKESLFNIIN------FYVMDNNILDLFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVE 185
+GIE +SRG ++ FV+
Sbjct: 55 LGIECLSRGANKCVFVD 71
>gi|194336287|ref|YP_002018081.1| hypothetical protein Ppha_1191 [Pelodictyon phaeoclathratiforme
BU-1]
gi|194308764|gb|ACF43464.1| Protein of unknown function methylase putative [Pelodictyon
phaeoclathratiforme BU-1]
Length = 178
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 14/174 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+Q+LGG + +K+ S + +RP VK + FD+L + LDL++G GS
Sbjct: 1 MQILGGTYKGRKIRSSSSLAIRPCSSRVKKSLFDMLTA----RMDFEGVSVLDLFAGFGS 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EA+SRG V FV+ + + L+ ++H RV+ F+G+
Sbjct: 57 LGFEALSRGAQSVCFVDQHVDALKAMKATALQL-------ALHD-RVKIVNSDVLAFLGR 108
Query: 229 -DGPFDYMSVTPPYTAVDYE-VVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIY 280
G FD + PPY+ DYE ++E + +L G ++ +H Y
Sbjct: 109 TTGQFDLLFCDPPYSWPDYERLIEKMFASTLLSQDGLVLMEHSAHLDFSHSPFY 162
>gi|23464929|ref|NP_695532.1| hypothetical protein BL0328 [Bifidobacterium longum NCC2705]
gi|23325523|gb|AAN24168.1| hypothetical protein with possible methylase domain
[Bifidobacterium longum NCC2705]
Length = 206
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 71/151 (47%), Gaps = 23/151 (15%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ ++V+ G+ + L +PK RP + K A F L S G L R LDL++GT
Sbjct: 2 KAMRVISGRFKGVALATPK-TGTRPTTDRTKEAIFSHLDSWG----VLDDARVLDLFAGT 56
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNV------LIPNLEWTGFLDVSSIHTVRVETFLE 220
G++GIEA+SRG E+ VE + + L N W L + ++
Sbjct: 57 GALGIEALSRGARELVAVESSRPAAALITKTLAQLQKNRSWDASL--------KARVLVK 108
Query: 221 RAEQFVGKDG-PFDYMSVTPPYTAVDYEVVE 250
+AEQ G G PFD + + PPY YE E
Sbjct: 109 KAEQVAGGFGEPFDVIFIDPPYA---YETAE 136
>gi|385814060|ref|YP_005850453.1| RsmD family RNA methyltransferase [Lactobacillus helveticus H10]
gi|323466779|gb|ADX70466.1| RNA methyltransferase, RsmD family [Lactobacillus helveticus H10]
Length = 182
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 10/134 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L + K RP + VK + F+ L G LDLY+G+G+
Sbjct: 1 MRIISGKYAKRNLFTLKSNKTRPTSDKVKESLFNSLGQF------FNGGNVLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG V+++ S ++ N+ T ++ S++ +R T L + F
Sbjct: 55 LGIEAVSRGYDHASLVDINHAACS-IIKKNVALTKEENLFSVYNMRSNTAL---KLFAEN 110
Query: 229 DGPFDYMSVTPPYT 242
FD + + PPY
Sbjct: 111 QEKFDLVFLDPPYA 124
>gi|158424015|ref|YP_001525307.1| hypothetical protein AZC_2391 [Azorhizobium caulinodans ORS 571]
gi|158330904|dbj|BAF88389.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
Length = 187
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L +P RP + ++ + F++L A G A R LDL++GTG+
Sbjct: 1 MRIVGGKHRGRPLQAPASKATRPTTDRLRESLFNMLAHAYGDAAD--GARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FVE + ++ N++ G + I E +G
Sbjct: 59 LGIEALSRGAVFALFVE-EAAEARALIRANVDALGLAGSTKIFRRDATALGE-----MGP 112
Query: 229 DGPFDYMSVTPPY 241
GP+D + PPY
Sbjct: 113 GGPYDLVFCDPPY 125
>gi|325290428|ref|YP_004266609.1| methyltransferase [Syntrophobotulus glycolicus DSM 8271]
gi|324965829|gb|ADY56608.1| methyltransferase [Syntrophobotulus glycolicus DSM 8271]
Length = 186
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 7/91 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + +KL + GM RP + VKGA F+IL + + + LDL++GTG+
Sbjct: 1 MRIIAGDFKGRKLKAVPGMTTRPTSDKVKGAVFNILGT------KVMEAKVLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
+G+EA+SRG +V VE DP + N++ N+
Sbjct: 55 LGLEALSRGAQKVVLVEKDP-MAWNIIKDNI 84
>gi|429729664|ref|ZP_19264321.1| RNA methyltransferase, RsmD family [Corynebacterium durum F0235]
gi|429149058|gb|EKX92048.1| RNA methyltransferase, RsmD family [Corynebacterium durum F0235]
Length = 196
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 38/204 (18%)
Query: 110 QVLGGKAR-RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ G+AR RK + P+G RP + + F LQ G + R LDL++G+G+
Sbjct: 5 RIIAGEARGRKITVPPEG--TRPTSDRAREGLFSSLQVRFGFTGA----RVLDLFAGSGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG EV VE DP + V+ N+E +V + ++ T+L A +
Sbjct: 59 LGLEAASRGAEEVVLVENDP-AAAEVIRRNIEVVKHPNV-RVEEMKASTYLAHAPREY-- 114
Query: 229 DGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLV----K 266
FD + PPY +D VVE + + D C + K
Sbjct: 115 ---FDMVLADPPYELIDESVREMLEALIPTLVDGAAVVVERNVNSPETDWPECFIPTTQK 171
Query: 267 IKDRRFG--RTHLAIYGPDWAQKK 288
+K R +G R +A+Y D A ++
Sbjct: 172 LKKRTYGIARMDMAVYHADLAGEE 195
>gi|307244230|ref|ZP_07526345.1| RNA methyltransferase, RsmD family [Peptostreptococcus stomatis DSM
17678]
gi|306492380|gb|EFM64418.1| RNA methyltransferase, RsmD family [Peptostreptococcus stomatis DSM
17678]
Length = 186
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 10/147 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR KL +P VRP + VK + F+I+Q + + LDL++G+G+
Sbjct: 1 MRVISGSARGLKLNTPSDDRVRPTTDRVKESMFNIIQD------RVYDSQVLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG S+ F + + ++ N+E +D S + + L E +
Sbjct: 55 LGIEALSRGASQAVFCD-NSLDSIKIIRSNIEKARVVDRSQLVNGDFKKCLRDMET---R 110
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYPLRT 255
FD + V PPY +E V +RT
Sbjct: 111 KQKFDLIFVDPPYYKGLFEEVLETIRT 137
>gi|148377445|ref|YP_001256321.1| DNA methylase [Mycoplasma agalactiae PG2]
gi|148291491|emb|CAL58877.1| DNA methylase [Mycoplasma agalactiae PG2]
Length = 182
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 35/190 (18%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++V+ GK R + L PK ++RP M+ V+ A F L+ L +DL++G+G
Sbjct: 1 MIRVISGKYRHRLLNWPKSKNIRPTMDKVREAIFSSLR------MQLEGKIVVDLFAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV- 226
S+ IE++S + VE D V + + +V+++ +E F A F+
Sbjct: 55 SMAIESVSNYAMKAVAVEKDKEAVKII---------YENVNALQINNIEVFNTNALAFLK 105
Query: 227 GKDG-PFDYMSVTPPYTAVDY--EVVEYPLRTDMLDTCGCLV-------KI--------- 267
K G FDY+ + PPY D E ++ + + L G +V KI
Sbjct: 106 SKTGRVFDYIFLDPPYAEYDLLNECIKLVKQNNFLSKNGLIVVETNDSEKIALPERLMVQ 165
Query: 268 KDRRFGRTHL 277
K++++G+ H+
Sbjct: 166 KNKKYGKVHI 175
>gi|395785580|ref|ZP_10465310.1| RsmD family RNA methyltransferase [Bartonella tamiae Th239]
gi|423717524|ref|ZP_17691714.1| RsmD family RNA methyltransferase [Bartonella tamiae Th307]
gi|395424611|gb|EJF90792.1| RsmD family RNA methyltransferase [Bartonella tamiae Th239]
gi|395427315|gb|EJF93423.1| RsmD family RNA methyltransferase [Bartonella tamiae Th307]
Length = 187
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 68/138 (49%), Gaps = 16/138 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + L++P G +RP + + + F+IL S R R LDL+SGTG+
Sbjct: 1 MRIVAGKYSGRSLVTPSGDAIRPTTDRTRESLFNILASRQNNFWHNR--RVLDLFSGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLI-PNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+GIEA+SRG FVE V LI N+E G V+ I L R +G
Sbjct: 59 LGIEALSRGAEAAVFVEHS--VEGRALIHKNIEAIGLQGVARI--------LRRDATRLG 108
Query: 228 KDG---PFDYMSVTPPYT 242
G PFD + PPY
Sbjct: 109 PIGTMKPFDSVFADPPYN 126
>gi|374622678|ref|ZP_09695200.1| methyltransferase [Ectothiorhodospira sp. PHS-1]
gi|373941801|gb|EHQ52346.1| methyltransferase [Ectothiorhodospira sp. PHS-1]
Length = 194
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 16/134 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GG+ R ++L P G +RP + V+ F+ LQ ++ R LDL++G+G+
Sbjct: 17 LRIIGGEWRSRRLSVPDGPGLRPTPDRVRETLFNWLQPV------IQGARCLDLFAGSGA 70
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EA SRG S V VE D V +++ + V + T RV+ ++
Sbjct: 71 LGFEAASRGASRVVMVERDARVAAHLGV---------QVEVLETDRVQVMARDGLAYLAA 121
Query: 229 -DGPFDYMSVTPPY 241
D FD + + PPY
Sbjct: 122 CDESFDLVFLDPPY 135
>gi|384412021|ref|YP_005621386.1| methyltransferase [Zymomonas mobilis subsp. mobilis ATCC 10988]
gi|335932395|gb|AEH62935.1| methyltransferase [Zymomonas mobilis subsp. mobilis ATCC 10988]
Length = 183
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 11/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R + L +P RP + + A F +L+S G SLR D+++GTG+
Sbjct: 1 MRIIAGKWRGRSLKTPNSDTTRPTSDRAREALFSMLESRMGSLESLRVA---DIFAGTGA 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+E++SRG + FVE DP +L N+E G + + V + ++
Sbjct: 58 LGLESLSRGAAFSLFVEQDP-EACKILKSNIEKMGAQADTRLMAQPVSSLAPISQ----- 111
Query: 229 DGPFDYMSVTPPYTA 243
PFD + PPY +
Sbjct: 112 --PFDLLLFDPPYNS 124
>gi|448744684|ref|ZP_21726568.1| methyltransferase [Staphylococcus aureus KT/Y21]
gi|445561990|gb|ELY18175.1| methyltransferase [Staphylococcus aureus KT/Y21]
Length = 180
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K + S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKAIESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL S ++ + L+ + +
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-VIKSNLANLDLEAQSEVYKNNADRALKALSK---R 108
Query: 229 DGPFDYMSVTPPYT 242
D FD + + PPY
Sbjct: 109 DIQFDVIFLDPPYN 122
>gi|95929550|ref|ZP_01312292.1| conserved hypothetical protein 95 [Desulfuromonas acetoxidans DSM
684]
gi|95134247|gb|EAT15904.1| conserved hypothetical protein 95 [Desulfuromonas acetoxidans DSM
684]
Length = 189
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 87/184 (47%), Gaps = 22/184 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+AR K+L S +G+++RP + V+ A F L S G S LDL++GTG+
Sbjct: 1 MRIISGQARGKQLASVQGIEIRPTSDRVREALFSSLTSRLG---SFDGMEVLDLFAGTGA 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + FV+ ++ N + + VE L++
Sbjct: 58 LGLEALSRGAAHGCFVDSGRQ-AQKLIHTNSAHCAMAQRCQLIALPVERALDKLR----- 111
Query: 229 DGPFDYMSVTPPYTA--VDYEVVEYPLRTDMLDTCGCLVKIKDR---------RFGRTHL 277
G FD + + PPY VD + + + D+L G + +D+ R+ R L
Sbjct: 112 -GKFDLIFLDPPYRKGLVDTTITKIS-QLDLLKPHGLICAEEDKATEVQQVLGRYQRIDL 169
Query: 278 AIYG 281
YG
Sbjct: 170 KTYG 173
>gi|429218232|ref|YP_007179876.1| N6-adenine-specific methylase [Deinococcus peraridilitoris DSM
19664]
gi|429129095|gb|AFZ66110.1| N6-adenine-specific methylase [Deinococcus peraridilitoris DSM
19664]
Length = 181
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 66/133 (49%), Gaps = 19/133 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L++LGG A+ + L P RP ++ + FD+L S G GR+LDLY G+G+
Sbjct: 10 LRILGGTAKGRALQVPD--SARPTGARLRKSLFDLLDSRQGA------GRFLDLYGGSGA 61
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA SRG +V VE +P V LE L +H V E A + +
Sbjct: 62 VGLEAASRGY-DVTLVERNPAAVR-----ILERNARLLSLPVHVVSGE-----ALGVLSR 110
Query: 229 DGPFDYMSVTPPY 241
G FD + V PPY
Sbjct: 111 LGAFDTVFVDPPY 123
>gi|410462786|ref|ZP_11316342.1| RNA methyltransferase, RsmD family [Desulfovibrio magneticus str.
Maddingley MBC34]
gi|409984050|gb|EKO40383.1| RNA methyltransferase, RsmD family [Desulfovibrio magneticus str.
Maddingley MBC34]
Length = 200
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 69/136 (50%), Gaps = 14/136 (10%)
Query: 109 LQVLGGK--ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++++GG+ R K++ G+ RP V+ A F +L + G A R LD Y+G
Sbjct: 1 MRIIGGRLGGRVIKVIDSPGL--RPATGRVREALFSMLAARG---ALFHGARVLDCYAGA 55
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF-LDVSSIHTVRVETFLERAEQF 225
GSVGIEA+SRG + F+E P V+ VL NL G DV+ + V L R
Sbjct: 56 GSVGIEALSRGAGKAIFIERSP-AVAKVLRDNLRGLGLGPDVAQVVEADVVKALGRL--- 111
Query: 226 VGKDGPFDYMSVTPPY 241
G FD +++ PPY
Sbjct: 112 --SGGYFDLIAIDPPY 125
>gi|242242429|ref|ZP_04796874.1| possible rRNA (guanine-N(2)-)-methyltransferase [Staphylococcus
epidermidis W23144]
gi|242234136|gb|EES36448.1| possible rRNA (guanine-N(2)-)-methyltransferase [Staphylococcus
epidermidis W23144]
Length = 187
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 8 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLYDVSGLG--------LDLFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG ++ FV+ + V V+ NL + + ++ + L + +
Sbjct: 60 LGIEALSRGMDKMIFVDQNFKAVK-VIKANLNQLDLMSQAEVYKNNADRAL---KALAKR 115
Query: 229 DGPFDYMSVTPPYT 242
+ FD + + PPY
Sbjct: 116 EVQFDVIFLDPPYN 129
>gi|418284861|ref|ZP_12897564.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21209]
gi|418925293|ref|ZP_13479196.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG2018]
gi|365172260|gb|EHM62987.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21209]
gi|377746588|gb|EHT70559.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG2018]
Length = 180
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL S + + L+ + +
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-VIKSNLANLDLEAQSEFYKNNADRALKALSK---R 108
Query: 229 DGPFDYMSVTPPYT 242
D FD + + PPY
Sbjct: 109 DIQFDVIFLDPPYN 122
>gi|392960530|ref|ZP_10325998.1| methyltransferase [Pelosinus fermentans DSM 17108]
gi|421054713|ref|ZP_15517678.1| methyltransferase [Pelosinus fermentans B4]
gi|421061081|ref|ZP_15523465.1| methyltransferase [Pelosinus fermentans B3]
gi|421063773|ref|ZP_15525719.1| methyltransferase [Pelosinus fermentans A12]
gi|421071576|ref|ZP_15532692.1| methyltransferase [Pelosinus fermentans A11]
gi|392440394|gb|EIW18074.1| methyltransferase [Pelosinus fermentans B4]
gi|392446841|gb|EIW24112.1| methyltransferase [Pelosinus fermentans A11]
gi|392452156|gb|EIW29109.1| methyltransferase [Pelosinus fermentans B3]
gi|392455107|gb|EIW31914.1| methyltransferase [Pelosinus fermentans DSM 17108]
gi|392462343|gb|EIW38438.1| methyltransferase [Pelosinus fermentans A12]
Length = 189
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 10/134 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ KL +P+G+ RP + VK A F+IL + + LD+++GTG+
Sbjct: 1 MRIITGSAKGIKLSAPRGLGTRPTADRVKEAVFNILGDI------VVDAQVLDIFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG S F++ ++++ N + T + + I V L+R F G
Sbjct: 55 LGLEALSRGASTAVFIDSSIDSITSIK-ENAQRTKLIGQAEILKNDVIRALDR---FAGI 110
Query: 229 DGPFDYMSVTPPYT 242
FD + PPY
Sbjct: 111 GRSFDLIFCDPPYN 124
>gi|302558167|ref|ZP_07310509.1| RsmD family RNA methyltransferase [Streptomyces griseoflavus
Tu4000]
gi|302475785|gb|EFL38878.1| RsmD family RNA methyltransferase [Streptomyces griseoflavus
Tu4000]
Length = 195
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 68/146 (46%), Gaps = 14/146 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGAAGGRRLAVPPGQGTRPTSDRAREGLFSTWQSLLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG V VE D V V +V+S+ E +AEQ
Sbjct: 59 AVGLEALSRGAGHVLLVEADARAVRTVR---------ENVTSLGLPGAEVRSGKAEQIAR 109
Query: 228 KD---GPFDYMSVTPPYTAVDYEVVE 250
P+D + + PPY D ++ E
Sbjct: 110 TAPPPEPYDLVFLDPPYAVPDGDLRE 135
>gi|293366888|ref|ZP_06613564.1| site-specific DNA-methyltransferase [Staphylococcus epidermidis
M23864:W2(grey)]
gi|291319189|gb|EFE59559.1| site-specific DNA-methyltransferase [Staphylococcus epidermidis
M23864:W2(grey)]
Length = 187
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 13/158 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 8 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLYDVSGLG--------LDLFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG ++ FV+ + V V+ NL + + ++ + L + +
Sbjct: 60 LGIEALSRGMDKMIFVDQNFKAVK-VIKANLNQLDLMSQAEVYKNNADRAL---KALAKR 115
Query: 229 DGPFDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLV 265
+ FD + + PPY + E + ++L G +V
Sbjct: 116 EIQFDVIFLDPPYNKGLINEAISRIAEFNLLKENGIIV 153
>gi|269123396|ref|YP_003305973.1| methyltransferase [Streptobacillus moniliformis DSM 12112]
gi|268314722|gb|ACZ01096.1| methyltransferase [Streptobacillus moniliformis DSM 12112]
Length = 183
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 17/161 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ G + + +LS G + RP +E VK A + I+ + + +LDLYSGTG+
Sbjct: 1 MRITSGYLKNRVILSRIGKETRPTLERVKEAIYSIIST------KVEDAIFLDLYSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ EA+SRG + +EMD + V+I N+ + V +E E K
Sbjct: 55 MSFEAMSRGANRAVMIEMDKEALR-VIIENVNNLNLDKKCRAYKNDVMRAIEILE---NK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYPLRT----DMLDTCGCLV 265
+ FD + + PPY + E L+ D+LD G ++
Sbjct: 111 NEKFDIIFMDPPYKE---NLTEKTLKKLSNHDILDKDGIII 148
>gi|417894265|ref|ZP_12538287.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21201]
gi|341852772|gb|EGS93656.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21201]
Length = 180
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFSSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL S ++ + L+ + +
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-VIKSNLANLDLEAQSEVYKNNADRALKALSK---R 108
Query: 229 DGPFDYMSVTPPYT 242
D FD + + PPY
Sbjct: 109 DIQFDVIFLDPPYN 122
>gi|49473910|ref|YP_031952.1| hypothetical protein BQ02480 [Bartonella quintana str. Toulouse]
gi|49239413|emb|CAF25751.1| hypothetical protein BQ02480 [Bartonella quintana str. Toulouse]
Length = 185
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 18/138 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GGK + L +P G +RP + + + F+IL S R LDL++GTG+
Sbjct: 1 MRVVGGKFAGRVLFTPVGQSIRPTSDRTRESLFNILASRE--EKFWTNKRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL--DVSSIHTVRVETFLERAEQFV 226
+GIEA+SRG FVE ++E G L ++ + + L R + +
Sbjct: 59 LGIEALSRGAKAAVFVE-----------NSVEGRGLLQKNIEAFELQSIGRILRRDAKKL 107
Query: 227 GKDG---PFDYMSVTPPY 241
GK G PFD + PPY
Sbjct: 108 GKIGTMRPFDVIFADPPY 125
>gi|56551471|ref|YP_162310.1| methyltransferase [Zymomonas mobilis subsp. mobilis ZM4]
gi|260752917|ref|YP_003225810.1| methyltransferase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
gi|56543045|gb|AAV89199.1| methyltransferase [Zymomonas mobilis subsp. mobilis ZM4]
gi|258552280|gb|ACV75226.1| methyltransferase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
Length = 183
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 11/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R + L +P RP + + A F +L+S G SLR D+++GTG+
Sbjct: 1 MRIIAGKWRGRSLKTPNSDTTRPTSDRAREALFSMLESRMGSFESLRVA---DIFAGTGA 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+E++SRG + FVE DP +L N+E G + + V + ++
Sbjct: 58 LGLESLSRGAAFSLFVEQDP-EACKILKSNIEKMGAQADTRLMAQPVSSLAPISQ----- 111
Query: 229 DGPFDYMSVTPPYTA 243
PFD + PPY +
Sbjct: 112 --PFDLLLFDPPYNS 124
>gi|261749952|ref|ZP_05993661.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
gi|261739705|gb|EEY27631.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
Length = 187
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L++P +RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNIL--AHSFPDKVEGVRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER-AEQF-- 225
+G+EA+SRG FVE + +L N+E G + I L R A Q
Sbjct: 59 LGLEALSRGARYATFVE-ESAEGRGILRQNIEALGLQGHTKI--------LRRDACQLGI 109
Query: 226 VGKDGPFDYMSVTPPY 241
VG PFD + PPY
Sbjct: 110 VGTMEPFDLVFADPPY 125
>gi|58337142|ref|YP_193727.1| hypothetical protein LBA0835 [Lactobacillus acidophilus NCFM]
gi|227903718|ref|ZP_04021523.1| possible rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus
acidophilus ATCC 4796]
gi|58254459|gb|AAV42696.1| hypothetical protein LBA0835 [Lactobacillus acidophilus NCFM]
gi|227868605|gb|EEJ76026.1| possible rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus
acidophilus ATCC 4796]
Length = 183
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 37/197 (18%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L + K RP + VK + F+ L G LDLY+G+G+
Sbjct: 1 MRIISGKYAKRNLFTLKSNRTRPTSDKVKESLFNSLGQF------FDGGNVLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR----VETFLERAEQ 224
+GIEA+SRG V+++ S ++ N+ T S++ +R ++TF E E+
Sbjct: 55 LGIEAVSRGYDRASLVDINRAACS-IIKKNVALTKEEAKFSVYNMRSNVALKTFAENGEK 113
Query: 225 FVGKDGPFDYMSVTPPYT----AVDYE--------------VVEYPLRTDMLDTCGCLVK 266
FD + + PPY A D + V E T++ + G L+
Sbjct: 114 -------FDLVFLDPPYAKEKIAKDMQQMNNLGLLNENAIIVAETDDHTELGNIEGFLL- 165
Query: 267 IKDRRFGRTHLAIYGPD 283
IKD G+T + IY D
Sbjct: 166 IKDHHLGKTIVRIYRKD 182
>gi|42527386|ref|NP_972484.1| methyltransferase [Treponema denticola ATCC 35405]
gi|422342342|ref|ZP_16423282.1| methyltransferase [Treponema denticola F0402]
gi|449104956|ref|ZP_21741678.1| RsmD family RNA methyltransferase [Treponema denticola AL-2]
gi|449109063|ref|ZP_21745702.1| RsmD family RNA methyltransferase [Treponema denticola ATCC 33520]
gi|449111599|ref|ZP_21748192.1| RsmD family RNA methyltransferase [Treponema denticola ATCC 33521]
gi|449113587|ref|ZP_21750074.1| RsmD family RNA methyltransferase [Treponema denticola ATCC 35404]
gi|449116178|ref|ZP_21752629.1| RsmD family RNA methyltransferase [Treponema denticola H-22]
gi|41817971|gb|AAS12395.1| methyltransferase, putative [Treponema denticola ATCC 35405]
gi|325473657|gb|EGC76846.1| methyltransferase [Treponema denticola F0402]
gi|448954065|gb|EMB34848.1| RsmD family RNA methyltransferase [Treponema denticola H-22]
gi|448957572|gb|EMB38313.1| RsmD family RNA methyltransferase [Treponema denticola ATCC 33521]
gi|448958503|gb|EMB39233.1| RsmD family RNA methyltransferase [Treponema denticola ATCC 35404]
gi|448960336|gb|EMB41051.1| RsmD family RNA methyltransferase [Treponema denticola ATCC 33520]
gi|448962232|gb|EMB42925.1| RsmD family RNA methyltransferase [Treponema denticola AL-2]
Length = 183
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 43/194 (22%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG + +++ PKG+ +RP M+ ++ + F IL G +LDL++G+G
Sbjct: 1 MRITGGSLKNRQVECPKGI-IRPAMDRMRESVFSILGDLSGL-------SFLDLFTGSGV 52
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
G+EA SRG V+ VE D P ++ NV + + + + ETF++RA++
Sbjct: 53 CGLEAYSRGAYPVYLVEKDADKFPVLLKNVSMADKKL-------ECKRMPAETFIKRAKE 105
Query: 225 FVGKDGPFDYMSVTPPY-TAVDYEVVE-----------------YPLRTDMLDTCGCLVK 266
FD + + PP+ E++E P M T G L K
Sbjct: 106 ------SFDIIYLDPPFPYKFHIELLEKIEESKILKEGGLVMMHRPSEKAMPQTIGSLTK 159
Query: 267 IKDRRFGRTHLAIY 280
+R +GR+ + Y
Sbjct: 160 SDERVYGRSIVDFY 173
>gi|347750629|ref|YP_004858194.1| methyltransferase [Bacillus coagulans 36D1]
gi|347583147|gb|AEO99413.1| methyltransferase [Bacillus coagulans 36D1]
Length = 198
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 83/191 (43%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + L + GM RP + VK A F+++ G LDLY+G+G
Sbjct: 1 MRVISGSQKGTVLKAVPGMGTRPTTDKVKEAIFNMIGP------YFEKGLGLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + + V NLE FL S ++ RA + + K
Sbjct: 55 LGIEALSRGMEKVIFVDKEIQALQTVR-ANLEKCDFLGRSEVY----RNDAGRALKVLAK 109
Query: 229 DG-PFDYMSVTPPYTAV------------------DYEVVEYPLRTDMLDTCGCLVKIKD 269
G FD + + PPY Y V E+ + + G L K
Sbjct: 110 RGLAFDTVFLDPPYKKQKLIAMLEFISANGLLLENGYAVCEHDAGLTLPEKAGNLFTYKT 169
Query: 270 RRFGRTHLAIY 280
++G T + IY
Sbjct: 170 AQYGITGITIY 180
>gi|399047078|ref|ZP_10739210.1| RNA methyltransferase, RsmD family [Brevibacillus sp. CF112]
gi|433546116|ref|ZP_20502454.1| hypothetical protein D478_20629 [Brevibacillus agri BAB-2500]
gi|398054911|gb|EJL47009.1| RNA methyltransferase, RsmD family [Brevibacillus sp. CF112]
gi|432182732|gb|ELK40295.1| hypothetical protein D478_20629 [Brevibacillus agri BAB-2500]
Length = 188
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW-LDLYSGTG 167
++V+ G+ R +KL + G RP + VK + F+++ G W LDLY+GTG
Sbjct: 1 MRVIAGEHRGRKLAAVPGSGTRPTTDKVKESIFNMI-------GPYFDGGWALDLYAGTG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
S+GIEA+SRG + FVE D + V+ N+ + + ++ + E + Q
Sbjct: 54 SLGIEALSRGADKAVFVERDAKAFA-VVKQNVSACRLDEYAELYRMDAERAI---RQLAK 109
Query: 228 KDGPFDYMSVTPPYT 242
+ PF+ + + PPY
Sbjct: 110 RAQPFELVFLDPPYA 124
>gi|415886451|ref|ZP_11548231.1| methyltransferase [Bacillus methanolicus MGA3]
gi|387587138|gb|EIJ79461.1| methyltransferase [Bacillus methanolicus MGA3]
Length = 135
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + + L + G RP + VK A F+++ G LDL++G+G
Sbjct: 1 MRVISGACKGRILKAVPGSSTRPTTDKVKEAIFNMIGP------YFDGGLGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG S+V FV+ D + ++ N++ G ++ S ++ ERA + + K
Sbjct: 55 LGIEALSRGLSKVIFVDKDKKAI-QIIHENIKTCGLMEQSEVYLNSA----ERALKAIIK 109
Query: 229 DG-PFDYMSVTPPY 241
G FD++ + PPY
Sbjct: 110 RGLVFDFIFLDPPY 123
>gi|367470557|ref|ZP_09470252.1| Ribosomal RNA small subunit methyltransferase D [Patulibacter sp.
I11]
gi|365814364|gb|EHN09567.1| Ribosomal RNA small subunit methyltransferase D [Patulibacter sp.
I11]
Length = 179
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 12/138 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ ++L +P G RP + V+ A F IL G LDL++G+G+
Sbjct: 1 MRVIAGRFGGRRLAAPPGTGTRPTADRVREALFSILGPPTGAAV-------LDLFAGSGA 53
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF-LDVSSIHTVRVETFLERAEQFVG 227
+G+EA+SRG + V FVE D + VL NL+ G D + + + L A
Sbjct: 54 LGLEALSRGAASVTFVERD-RRAAGVLRENLQALGVGEDEARVLAIEAARHLRDAAT--- 109
Query: 228 KDGPFDYMSVTPPYTAVD 245
+ +D + + PPY D
Sbjct: 110 RGDAYDLVLLDPPYRDAD 127
>gi|251810578|ref|ZP_04825051.1| possible rRNA (guanine-N(2)-)-methyltransferase [Staphylococcus
epidermidis BCM-HMP0060]
gi|251805738|gb|EES58395.1| possible rRNA (guanine-N(2)-)-methyltransferase [Staphylococcus
epidermidis BCM-HMP0060]
Length = 187
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 8 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLYDVSGLG--------LDLFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG ++ FV+ + V V+ NL + + ++ + L + +
Sbjct: 60 LGIEALSRGMDKMIFVDQNFKAVK-VIKANLNQLDLMSQAEVYKNNADRAL---KALAKR 115
Query: 229 DGPFDYMSVTPPYT 242
+ FD + + PPY
Sbjct: 116 EIQFDVIFLDPPYN 129
>gi|449105069|ref|ZP_21741779.1| RsmD family RNA methyltransferase [Treponema denticola ASLM]
gi|449119747|ref|ZP_21756142.1| RsmD family RNA methyltransferase [Treponema denticola H1-T]
gi|449122137|ref|ZP_21758483.1| RsmD family RNA methyltransferase [Treponema denticola MYR-T]
gi|451969384|ref|ZP_21922613.1| RsmD family RNA methyltransferase [Treponema denticola US-Trep]
gi|448949050|gb|EMB29876.1| RsmD family RNA methyltransferase [Treponema denticola H1-T]
gi|448949578|gb|EMB30403.1| RsmD family RNA methyltransferase [Treponema denticola MYR-T]
gi|448967397|gb|EMB48033.1| RsmD family RNA methyltransferase [Treponema denticola ASLM]
gi|451701773|gb|EMD56232.1| RsmD family RNA methyltransferase [Treponema denticola US-Trep]
Length = 183
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 43/194 (22%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG + +++ PKG+ +RP M+ ++ + F IL G +LDL++G+G
Sbjct: 1 MRITGGSLKNRQVECPKGI-IRPAMDRMRESVFSILGDLSGL-------SFLDLFTGSGV 52
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
G+EA SRG V+ VE D P ++ NV + + + + ETF++RA++
Sbjct: 53 CGLEAYSRGAYPVYLVEKDADKFPVLLKNVSMADKKL-------ECKRMPAETFIKRAKE 105
Query: 225 FVGKDGPFDYMSVTPPY-TAVDYEVVE-----------------YPLRTDMLDTCGCLVK 266
FD + + PP+ E++E P M T G L K
Sbjct: 106 ------SFDIIYLDPPFPYKFHIELLEKIAESKILKEGGLVMMHRPSEKAMPQTIGSLTK 159
Query: 267 IKDRRFGRTHLAIY 280
+R +GR+ + Y
Sbjct: 160 SDERVYGRSIVDFY 173
>gi|375094021|ref|ZP_09740286.1| RNA methyltransferase, RsmD family [Saccharomonospora marina XMU15]
gi|374654754|gb|EHR49587.1| RNA methyltransferase, RsmD family [Saccharomonospora marina XMU15]
Length = 186
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 72/137 (52%), Gaps = 19/137 (13%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G+A + L P RP E V+ A F+ L++AG L R LDLY+G+G
Sbjct: 1 MTRIVAGRAGGRALRVPA-HGTRPTSERVREALFNALEAAG----ELDGARVLDLYAGSG 55
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSSIHTVRVETFLER-AEQ 224
++G+EA+SRG + FVE D ++ + +L G ++ RVE+ L R AE+
Sbjct: 56 ALGLEALSRGAATAVFVESDRRATESLRANVASLRLGG-----TVRHGRVESVLARHAEE 110
Query: 225 FVGKDGPFDYMSVTPPY 241
PFD + PPY
Sbjct: 111 ------PFDLVLADPPY 121
>gi|358051931|ref|ZP_09145957.1| methyltransferase [Staphylococcus simiae CCM 7213]
gi|357258581|gb|EHJ08612.1| methyltransferase [Staphylococcus simiae CCM 7213]
Length = 180
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLFDIDGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL+ + + ++ + L + +
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVQ-VIKANLKQLDLMPQAEVYKNNADRAL---KALAKR 108
Query: 229 DGPFDYMSVTPPYT 242
+ FD + + PPY
Sbjct: 109 EIQFDIIFLDPPYN 122
>gi|304373213|ref|YP_003856422.1| hypothetical Ribosomal RNA small subunit methyltransferase D
[Mycoplasma hyorhinis HUB-1]
gi|304309404|gb|ADM21884.1| putative Ribosomal RNA small subunit methyltransferase D
[Mycoplasma hyorhinis HUB-1]
Length = 183
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 32/158 (20%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++++ GK R + +P VRPM + + A F LQ + R LDL+SGTG
Sbjct: 1 MIRIIAGKYRGLLIKNPDFNIVRPMSDRAREAIFSSLQFF------IPDKRVLDLFSGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG EV E+D V N+ +++ + H++ F++R V
Sbjct: 55 AIGIEALSRGAKEVIASELDKKVFDNI----------VELKNKHSIE-NYFIQRKSALVL 103
Query: 228 KD----GPFDYMSVTPPYTAV-----------DYEVVE 250
D F + + PP+T + DY+++E
Sbjct: 104 LDEVQNQKFSIIFLDPPHTQIEVTKASFAKIYDYQILE 141
>gi|256842912|ref|ZP_05548400.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
125-2-CHN]
gi|293381233|ref|ZP_06627240.1| RNA methyltransferase, RsmD family [Lactobacillus crispatus 214-1]
gi|295692717|ref|YP_003601327.1| methyltransferase [Lactobacillus crispatus ST1]
gi|423317777|ref|ZP_17295674.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
FB049-03]
gi|423321115|ref|ZP_17298987.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
FB077-07]
gi|256614332|gb|EEU19533.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
125-2-CHN]
gi|290922201|gb|EFD99196.1| RNA methyltransferase, RsmD family [Lactobacillus crispatus 214-1]
gi|295030823|emb|CBL50302.1| Methyltransferase [Lactobacillus crispatus ST1]
gi|405596438|gb|EKB69774.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
FB077-07]
gi|405597836|gb|EKB71086.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
FB049-03]
Length = 182
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 10/134 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L + K RP + VK + F+ L + G LDLY+G+G+
Sbjct: 1 MRIISGKYAKRNLFTLKSNRTRPTSDKVKESLFNSLGQF------FQGGNVLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRGC V+++ + ++ N+ T +++ +R L + F
Sbjct: 55 LGIEAVSRGCDHASLVDINHAACT-IIKKNVALTKEEQRFNVYNMRSSAAL---KLFSEN 110
Query: 229 DGPFDYMSVTPPYT 242
D FD + + PPY
Sbjct: 111 DEKFDLVFLDPPYA 124
>gi|157273446|gb|ABV27345.1| putative methyltransferase [Candidatus Chloracidobacterium
thermophilum]
Length = 183
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 28/190 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + K+L S G+ VRP + ++ F+IL + +LDL +G+G+
Sbjct: 1 MRVIAGIHKGKRLRSEPGLRVRPTSDRMRETLFNIL------APRISDKAFLDLCAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIEA+SRG + FVE + L+ NL G + + + + +QFV
Sbjct: 55 VGIEALSRGAARATFVERSRRALM-ALVENLARCGIGEEAEVIQ---RDAISAIKQFVQA 110
Query: 229 DGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDR 270
FD++ PPY + YE +VE+ + + +T G L + +
Sbjct: 111 GRRFDFIFCDPPYASSLYEPLLALVGNCPLLAEDGWFIVEHHAKQAIAETLGELRRFRAV 170
Query: 271 RFGRTHLAIY 280
+ G + L+ +
Sbjct: 171 QQGESTLSFF 180
>gi|389580616|ref|ZP_10170643.1| LOW QUALITY PROTEIN: RNA methyltransferase, RsmD family
[Desulfobacter postgatei 2ac9]
gi|389402251|gb|EIM64473.1| LOW QUALITY PROTEIN: RNA methyltransferase, RsmD family
[Desulfobacter postgatei 2ac9]
Length = 188
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 18/144 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R +KL+S G D+RP + V+ A F+IL +R R LD+++GTG+
Sbjct: 1 MRIISGACRGRKLVSDPGKDIRPTSDRVREAVFNILGPG------IRGKRVLDMFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG FV+ NV+ N+E D + I ++ A
Sbjct: 55 LGLEALSRGAQSAVFVDA-ARSSCNVIKRNIELCRMADQARILC---HDLIKGALPVFHH 110
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYP 252
FD + + PPY EYP
Sbjct: 111 --TFDLIFMDPPYNK------EYP 126
>gi|345849806|ref|ZP_08802813.1| DNA methylase [Streptomyces zinciresistens K42]
gi|345638787|gb|EGX60287.1| DNA methylase [Streptomyces zinciresistens K42]
Length = 195
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 14/146 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F QS G P L+ R LDLY+G+G
Sbjct: 1 MTRVIAGAAGGRRLAVPPGQGTRPTSDRAREGLFSTWQSLLGGP--LKGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG S VE D + V+ N+ G E +AEQ +
Sbjct: 59 AVGLEALSRGASHTLLVEADA-RAARVVRENVRGLGLPG--------AEVRSGKAEQIIR 109
Query: 228 KDG---PFDYMSVTPPYTAVDYEVVE 250
P+D + + PPY D ++ E
Sbjct: 110 NPAPAEPYDLVFLDPPYAVPDGDLRE 135
>gi|302522132|ref|ZP_07274474.1| RsmD family RNA methyltransferase [Streptomyces sp. SPB78]
gi|318056543|ref|ZP_07975266.1| hypothetical protein SSA3_01277 [Streptomyces sp. SA3_actG]
gi|318076717|ref|ZP_07984049.1| hypothetical protein SSA3_08332 [Streptomyces sp. SA3_actF]
gi|302431027|gb|EFL02843.1| RsmD family RNA methyltransferase [Streptomyces sp. SPB78]
Length = 195
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 14/146 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP E + F ++ G P L R LDLY G+G
Sbjct: 1 MTRVIAGTAGGRRLAVPPGTGTRPTSERAREGLFSTWEALLGGP--LDGERVLDLYGGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG + VE D V + +V + E +A Q V
Sbjct: 59 AVGLEALSRGAAHALLVESDARAVRTIRA---------NVRDLGLTGAEVRPGKAAQIVA 109
Query: 228 K---DGPFDYMSVTPPYTAVDYEVVE 250
P+D + + PPY D E+ E
Sbjct: 110 GPPPSAPYDLVFLDPPYAVSDAELGE 135
>gi|227545781|ref|ZP_03975830.1| possible rRNA (guanine-N(2)-)-methyltransferase [Bifidobacterium
longum subsp. longum ATCC 55813]
gi|239622521|ref|ZP_04665552.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|312133354|ref|YP_004000693.1| n6-adenine-specific methylase [Bifidobacterium longum subsp. longum
BBMN68]
gi|317481971|ref|ZP_07940996.1| RsmD family RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
gi|322688455|ref|YP_004208189.1| methylase [Bifidobacterium longum subsp. infantis 157F]
gi|384202184|ref|YP_005587931.1| methylase [Bifidobacterium longum subsp. longum KACC 91563]
gi|419847490|ref|ZP_14370660.1| RNA methyltransferase, RsmD family [Bifidobacterium longum subsp.
longum 1-6B]
gi|419854996|ref|ZP_14377766.1| RNA methyltransferase, RsmD family [Bifidobacterium longum subsp.
longum 44B]
gi|227213897|gb|EEI81736.1| possible rRNA (guanine-N(2)-)-methyltransferase [Bifidobacterium
longum subsp. infantis ATCC 55813]
gi|239514518|gb|EEQ54385.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|311772577|gb|ADQ02065.1| N6-adenine-specific methylase [Bifidobacterium longum subsp. longum
BBMN68]
gi|316916538|gb|EFV37935.1| RsmD family RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
gi|320459791|dbj|BAJ70411.1| putative methylase [Bifidobacterium longum subsp. infantis 157F]
gi|338755191|gb|AEI98180.1| methylase [Bifidobacterium longum subsp. longum KACC 91563]
gi|386410885|gb|EIJ25655.1| RNA methyltransferase, RsmD family [Bifidobacterium longum subsp.
longum 1-6B]
gi|386416328|gb|EIJ30830.1| RNA methyltransferase, RsmD family [Bifidobacterium longum subsp.
longum 44B]
Length = 203
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 70/149 (46%), Gaps = 23/149 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L +PK RP + K A F L S G L R LDL++GTG+
Sbjct: 1 MRVISGRFKGVALATPK-TGTRPTTDRTKEAIFSHLDSWG----VLDDARVLDLFAGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV------LIPNLEWTGFLDVSSIHTVRVETFLERA 222
+GIEA+SRG E+ VE + + L N W L + +++A
Sbjct: 56 LGIEALSRGARELVAVESSRPAAALITKTLAQLQKNRSWDASL--------KARVLVKKA 107
Query: 223 EQFVGKDG-PFDYMSVTPPYTAVDYEVVE 250
EQ G G PFD + + PPY YE E
Sbjct: 108 EQVAGGFGEPFDVIFIDPPYA---YETAE 133
>gi|402850415|ref|ZP_10898616.1| Ribosomal RNA small subunit methyltransferase D [Rhodovulum sp.
PH10]
gi|402499320|gb|EJW11031.1| Ribosomal RNA small subunit methyltransferase D [Rhodovulum sp.
PH10]
Length = 185
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 8/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG R + L P+ +RP + ++ + F+IL A P + R LDL+SGTG+
Sbjct: 1 MRIVGGHLRGRTLAHPRSAAIRPTSDRLRESLFNILAHAYDDP--IADARVLDLFSGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + V FV+ D ++ N+E G S I R T L A
Sbjct: 59 LGLEALSRGAAFVLFVD-DGAEARALIRQNVETLGLAAKSRIFR-RDATKLGAAHPLA-- 114
Query: 229 DGPFDYMSVTPPY 241
PF + PPY
Sbjct: 115 --PFSLAFLDPPY 125
>gi|419782889|ref|ZP_14308686.1| RNA methyltransferase, RsmD family [Streptococcus oralis SK610]
gi|383182815|gb|EIC75364.1| RNA methyltransferase, RsmD family [Streptococcus oralis SK610]
Length = 179
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 13/134 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRK-AQAIIAENIQMTK--EVSKFQLLKMEA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYT 242
+GPFD + + PPY
Sbjct: 108 NGPFDLVFLDPPYA 121
>gi|404368530|ref|ZP_10973880.1| RsmD family RNA methyltransferase [Fusobacterium ulcerans ATCC
49185]
gi|313687825|gb|EFS24660.1| RsmD family RNA methyltransferase [Fusobacterium ulcerans ATCC
49185]
Length = 182
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ K++ S KG D RP + +K + F I+ A P S+ +LDL+SG+GS
Sbjct: 1 MKIIAGDAKNKRIKSRKGTDTRPTLGSMKESLFSII--APYVPDSV----FLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG +E D + + I N+ + D + + RA + +G+
Sbjct: 55 ISLEALSRGAKRAVMIEKDTEALKYI-IENVNTLEYEDRCRAY----KNDALRAIEILGR 109
Query: 229 DG-PFDYMSVTPPY 241
G FD + + PPY
Sbjct: 110 KGEKFDIIFMDPPY 123
>gi|335046120|ref|ZP_08539143.1| RNA methyltransferase, RsmD family [Oribacterium sp. oral taxon 108
str. F0425]
gi|333759906|gb|EGL37463.1| RNA methyltransferase, RsmD family [Oribacterium sp. oral taxon 108
str. F0425]
Length = 182
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 10/133 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L +P+G+D RP + +K F+I+Q L LDL++G+G+
Sbjct: 1 MRVIAGTARRMNLKTPEGLDTRPTQDRIKETLFNIIQ------FDLTNKDVLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + F + + + NL+ T F + S + + + + K
Sbjct: 55 LGIEALSRGAARAVFCDSARQAIL-CIEENLQKTHFKEQSLVLSGDYNGAI---NSLMRK 110
Query: 229 DGPFDYMSVTPPY 241
D F + + PPY
Sbjct: 111 DYHFGLVFMDPPY 123
>gi|163844394|ref|YP_001622049.1| methyltransferase [Brucella suis ATCC 23445]
gi|163675117|gb|ABY39227.1| Methyltransferase [Brucella suis ATCC 23445]
Length = 187
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L++P +RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNIL--AHSFPDKVEGVRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER-AEQF-- 225
+G+EA+SRG FVE + +L N+E G + I L R A Q
Sbjct: 59 LGLEALSRGARYATFVE-ESAEGRGILRQNIEALGLQGHTKI--------LRRDACQLGI 109
Query: 226 VGKDGPFDYMSVTPPY 241
VG PFD + PPY
Sbjct: 110 VGTMEPFDLVFADPPY 125
>gi|23499967|ref|NP_699407.1| hypothetical protein BRA0207 [Brucella suis 1330]
gi|62317154|ref|YP_223007.1| hypothetical protein BruAb2_0202 [Brucella abortus bv. 1 str.
9-941]
gi|83269137|ref|YP_418428.1| N-6 adenine-specific DNA methylase [Brucella melitensis biovar
Abortus 2308]
gi|148558154|ref|YP_001257254.1| hypothetical protein BOV_A0186 [Brucella ovis ATCC 25840]
gi|161620285|ref|YP_001594171.1| methyltransferase [Brucella canis ATCC 23365]
gi|189022413|ref|YP_001932154.1| hypothetical protein BAbS19_II01890 [Brucella abortus S19]
gi|256014992|ref|YP_003105001.1| methyltransferase [Brucella microti CCM 4915]
gi|260568471|ref|ZP_05838940.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|260756975|ref|ZP_05869323.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
gi|260762894|ref|ZP_05875226.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260882786|ref|ZP_05894400.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|261220058|ref|ZP_05934339.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261313692|ref|ZP_05952889.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261323528|ref|ZP_05962725.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|265986929|ref|ZP_06099486.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|265996595|ref|ZP_06109152.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|340791963|ref|YP_004757427.1| methyltransferase [Brucella pinnipedialis B2/94]
gi|376270749|ref|YP_005113794.1| N6-adenine-specific methylase [Brucella abortus A13334]
gi|376277083|ref|YP_005153144.1| N6-adenine-specific methylase [Brucella canis HSK A52141]
gi|376278189|ref|YP_005108222.1| hypothetical protein BSVBI22_B0203 [Brucella suis VBI22]
gi|384222751|ref|YP_005613916.1| hypothetical protein BS1330_II0204 [Brucella suis 1330]
gi|423168971|ref|ZP_17155673.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI435a]
gi|423171596|ref|ZP_17158270.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI474]
gi|423174674|ref|ZP_17161344.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI486]
gi|423176551|ref|ZP_17163217.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI488]
gi|423181025|ref|ZP_17167665.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI010]
gi|423184158|ref|ZP_17170794.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI016]
gi|423187307|ref|ZP_17173920.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI021]
gi|423189728|ref|ZP_17176337.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI259]
gi|23463548|gb|AAN33412.1| conserved hypothetical protein TIGR00095 [Brucella suis 1330]
gi|62197347|gb|AAX75646.1| conserved hypothetical protein TIGR00095 [Brucella abortus bv. 1
str. 9-941]
gi|82939411|emb|CAJ12365.1| N-6 Adenine-specific DNA methylase:N6 adenine-specific DNA
methyltransferase, N12 class:Conserved hypothetical
protein 95 [Brucella melitensis biovar Abortus 2308]
gi|148369439|gb|ABQ62311.1| conserved hypothetical protein TIGR00095 [Brucella ovis ATCC 25840]
gi|161337096|gb|ABX63400.1| methyltransferase [Brucella canis ATCC 23365]
gi|189020987|gb|ACD73708.1| conserved hypothetical protein TIGR00095 [Brucella abortus S19]
gi|255997652|gb|ACU49339.1| methyltransferase [Brucella microti CCM 4915]
gi|260155136|gb|EEW90217.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|260673315|gb|EEX60136.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260677083|gb|EEX63904.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
gi|260872314|gb|EEX79383.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|260918642|gb|EEX85295.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261299508|gb|EEY03005.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261302718|gb|EEY06215.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|262550892|gb|EEZ07053.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|264659126|gb|EEZ29387.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|340560422|gb|AEK55659.1| methyltransferase [Brucella pinnipedialis B2/94]
gi|343384199|gb|AEM19690.1| hypothetical protein BS1330_II0204 [Brucella suis 1330]
gi|358259627|gb|AEU07360.1| hypothetical protein BSVBI22_B0203 [Brucella suis VBI22]
gi|363401921|gb|AEW18890.1| N6-adenine-specific methylase [Brucella abortus A13334]
gi|363405457|gb|AEW15751.1| N6-adenine-specific methylase [Brucella canis HSK A52141]
gi|374536018|gb|EHR07538.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI474]
gi|374538177|gb|EHR09687.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI435a]
gi|374539243|gb|EHR10749.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI486]
gi|374545615|gb|EHR17075.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI010]
gi|374546458|gb|EHR17917.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI016]
gi|374553566|gb|EHR24981.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI488]
gi|374555111|gb|EHR26520.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI021]
gi|374555768|gb|EHR27173.1| RsmD family RNA methyltransferase [Brucella abortus bv. 1 str.
NI259]
Length = 187
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L++P +RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNIL--AHSFPDKVEGVRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER-AEQF-- 225
+G+EA+SRG FVE + +L N+E G + I L R A Q
Sbjct: 59 LGLEALSRGARYATFVE-ESAEGRGILRQNIEALGLQGHTKI--------LRRDACQLGI 109
Query: 226 VGKDGPFDYMSVTPPY 241
VG PFD + PPY
Sbjct: 110 VGTMEPFDLVFADPPY 125
>gi|419780565|ref|ZP_14306412.1| RNA methyltransferase, RsmD family [Streptococcus oralis SK100]
gi|383185163|gb|EIC77662.1| RNA methyltransferase, RsmD family [Streptococcus oralis SK100]
Length = 179
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 13/134 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRK-AQAIIAENIQMTK--EVSKFQLLKMEA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYT 242
+GPFD + + PPY
Sbjct: 108 NGPFDLVFLDPPYA 121
>gi|167769118|ref|ZP_02441171.1| hypothetical protein ANACOL_00441 [Anaerotruncus colihominis DSM
17241]
gi|167668758|gb|EDS12888.1| RNA methyltransferase, RsmD family [Anaerotruncus colihominis DSM
17241]
Length = 183
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 81/201 (40%), Gaps = 37/201 (18%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +L +P+G RP ++ K A F IL L LDL++G+G
Sbjct: 1 MRVITGTARGTRLEAPEGQQTRPTSDMAKEAVFSILHF------ELAGAAVLDLFAGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ V+ NL + + + +FL G
Sbjct: 55 LGIEALSRGAKSCVFVD-HSRAAQEVIRRNLAAAKLTPLGRVAAMDASSFL------AGC 107
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKDR-----------------R 271
FD + PPY E + M D G +V DR R
Sbjct: 108 RDRFDIALLDPPYDGGQLETALAGVAALMNDG-GVIVCETDRRAEPPAMVGTFCIQKAYR 166
Query: 272 FGRTHLAIYGPDWAQKKRKSE 292
+GRT + Y +KR+ E
Sbjct: 167 YGRTKITTY------RKRQEE 181
>gi|116750413|ref|YP_847100.1| putative methyltransferase [Syntrophobacter fumaroxidans MPOB]
gi|116750455|ref|YP_847142.1| putative methyltransferase [Syntrophobacter fumaroxidans MPOB]
gi|116699477|gb|ABK18665.1| putative methyltransferase [Syntrophobacter fumaroxidans MPOB]
gi|116699519|gb|ABK18707.1| putative methyltransferase [Syntrophobacter fumaroxidans MPOB]
Length = 185
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 29/190 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTG 167
++++ G+ ++L SP +RP ++ V+ A F I+ A PG R LDL++GTG
Sbjct: 1 MRIVAGQFGGRRLRSPGDARIRPTIDRVREAVFSII-------APHVPGARVLDLFAGTG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ G+EA+SRG S FV+ V ++ N+ G D + + V L R +
Sbjct: 54 AFGLEALSRGASRAVFVDQSRDAV-RIIEENIARCGVQDRARVILAPVRKALLRLAE--- 109
Query: 228 KDGPFDYMSVTPPY---------------TAVDYEVVEYPLRTDMLDTC--GCLVKIKDR 270
+ G FD + + PPY T D V+ D+L T VK ++R
Sbjct: 110 EGGSFDLVFMDPPYGKGCLEASLPRLGKVTHSDTLVIGEHHAKDVLPTTPQEGWVKTEER 169
Query: 271 RFGRTHLAIY 280
R+G T ++ +
Sbjct: 170 RYGDTRISFF 179
>gi|319788722|ref|YP_004090037.1| methyltransferase [Ruminococcus albus 7]
gi|315450589|gb|ADU24151.1| methyltransferase [Ruminococcus albus 7]
Length = 182
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 13/133 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G R KKL + +D RP ++VK A F +Q P S + LDL++G+G
Sbjct: 1 MRVITGSRRGKKLKTLDTLDTRPTTDMVKEAVFSAIQF--DVPGS----QVLDLFAGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SR S FV+ +P V V+ N+ F S + + +++ A+
Sbjct: 55 MGIEALSREASHCVFVDNNPAAV-QVIKENISDCKFNTESRVLNMDSLDYIKVAK----- 108
Query: 229 DGPFDYMSVTPPY 241
G FD + + PPY
Sbjct: 109 -GQFDIVLLDPPY 120
>gi|397676571|ref|YP_006518109.1| methyltransferase [Zymomonas mobilis subsp. mobilis ATCC 29191]
gi|395397260|gb|AFN56587.1| methyltransferase [Zymomonas mobilis subsp. mobilis ATCC 29191]
Length = 183
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 11/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R + L +P RP + + A F +L+S G SLR D+++GTG+
Sbjct: 1 MRIIAGKWRGRSLKTPNSDTTRPTSDRAREALFSMLESRMGSLESLRVA---DIFAGTGA 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+E++SRG + FVE DP +L N+E G + + V + ++
Sbjct: 58 LGLESLSRGAAFSLFVEQDP-EACKILKGNIEKMGAQADTRLMAQPVSSLAPISQ----- 111
Query: 229 DGPFDYMSVTPPYTA 243
PFD + PPY +
Sbjct: 112 --PFDLLLFDPPYNS 124
>gi|336179516|ref|YP_004584891.1| methyltransferase [Frankia symbiont of Datisca glomerata]
gi|334860496|gb|AEH10970.1| methyltransferase [Frankia symbiont of Datisca glomerata]
Length = 185
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 67/142 (47%), Gaps = 19/142 (13%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++GG AR + P G RP + + F+ L S LR R+ DLY+G+G
Sbjct: 1 MARIIGGIARGCPIRVPPGGGTRPTSDRAREGLFNTLASL----VELRGARFADLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS----SIHTVRVETFLERAE 223
+VG+EA+SRG S V FV+ V L N GF V S+ V VE ERA
Sbjct: 57 AVGLEALSRGASHVLFVDRSAAAV-RTLRANAAALGFTGVEILFRSVQRV-VEIMPERA- 113
Query: 224 QFVGKDGPFDYMSVTPPYTAVD 245
FD + + PPY D
Sbjct: 114 --------FDVVFLDPPYALSD 127
>gi|154499927|ref|ZP_02037965.1| hypothetical protein BACCAP_03584 [Bacteroides capillosus ATCC
29799]
gi|150271525|gb|EDM98782.1| RNA methyltransferase, RsmD family [Pseudoflavonifractor capillosus
ATCC 29799]
Length = 181
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 14/158 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR ++L GM+ RP + VK + F+I+Q + LDL+ GTG
Sbjct: 1 MRVITGTARGRRLKELPGMETRPTTDKVKESIFNIVQF------DVEGRNVLDLFGGTGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV++ + V+ N+++ GF + FL G
Sbjct: 55 LGIEALSRGAERCTFVDLRKEAAA-VIRENVKFCGFEGQGKVVQGDGIAFL------TGC 107
Query: 229 DGPFDYMSVTPPYTAVDYE-VVEYPLRTDMLDTCGCLV 265
FD + + PPY + E +E + D++ G +V
Sbjct: 108 REKFDLVFLDPPYASGLLERALEVIAKIDIMSENGIIV 145
>gi|85717174|ref|ZP_01048132.1| hypothetical protein NB311A_14632 [Nitrobacter sp. Nb-311A]
gi|85696007|gb|EAQ33907.1| hypothetical protein NB311A_14632 [Nitrobacter sp. Nb-311A]
Length = 184
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + L SP +RP + ++ + F+IL A P R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNLASPSTQQIRPTADRLRESLFNILVHAYDDPVV--DARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ + +L N+E G V+ ++ R T L A
Sbjct: 59 LGIEAVSRGAKFTLFVD-NGAEARALLRNNVEALGLGGVTKVYR-RDATHLGPAHPLA-- 114
Query: 229 DGPFDYMSVTPPY 241
PF + + PPY
Sbjct: 115 --PFSLVFLDPPY 125
>gi|121602303|ref|YP_989461.1| putative methyltransferase [Bartonella bacilliformis KC583]
gi|421761265|ref|ZP_16198068.1| putative methyltransferase [Bartonella bacilliformis INS]
gi|120614480|gb|ABM45081.1| putative methyltransferase [Bartonella bacilliformis KC583]
gi|411173049|gb|EKS43097.1| putative methyltransferase [Bartonella bacilliformis INS]
Length = 185
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 69/136 (50%), Gaps = 14/136 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L SP+G +RP + + + F+I S G + + R LDL+SGTG+
Sbjct: 1 MRVVSGKFAGRVLFSPRGQSIRPTSDRTRESLFNIFSSREGQFWTGK--RILDLFSGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FVE + +++ N+E G + I L R +G
Sbjct: 59 LGIEALSRGAKAAVFVE-NSIEGRSLIQKNIESFGLQGIGRI--------LRRDATKLGN 109
Query: 229 DG---PFDYMSVTPPY 241
G PFD + PPY
Sbjct: 110 IGTMLPFDVIFADPPY 125
>gi|172057985|ref|YP_001814445.1| methyltransferase [Exiguobacterium sibiricum 255-15]
gi|171990506|gb|ACB61428.1| methyltransferase [Exiguobacterium sibiricum 255-15]
Length = 189
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 12/158 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + ++ + G RP + VK + F+++ G+ LDL++G+G
Sbjct: 1 MRVISGERKGTRIKAVPGDQTRPTTDKVKESLFNVI------GPYFDGGKALDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRGC E FV+ V + NL+ T + S + V L +
Sbjct: 55 LGIEALSRGCDEAVFVDQHFRAVQTIK-ENLQTTRLTERSRVLKKDVTVALAE----LAG 109
Query: 229 DGPFDYMSVTPPYTAVDY-EVVEYPLRTDMLDTCGCLV 265
+ PF + + PPY E V Y + DML G +V
Sbjct: 110 ESPFKLIFLDPPYAKEQLAEQVAYIEQHDMLTDNGVIV 147
>gi|421597589|ref|ZP_16041175.1| hypothetical protein BCCGELA001_09331, partial [Bradyrhizobium sp.
CCGE-LA001]
gi|404270302|gb|EJZ34396.1| hypothetical protein BCCGELA001_09331, partial [Bradyrhizobium sp.
CCGE-LA001]
Length = 160
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 11/167 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + L SP D+RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNLASPSSRDIRPTADRLRESVFNILVHAYDDP--IVDARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA SRG FV+ + +L N+E G V+ ++ R T L A
Sbjct: 59 LGIEAASRGAKFTLFVD-NGAEARALLRNNVESLGLGGVTKVYR-RDATDLGPAHPVE-- 114
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKI---KDRRF 272
PF + + PPY E LR T G L+ + KD +F
Sbjct: 115 --PFSLVFLDPPYGKGFAEKALASLRDGGWLTPGALLVVEEAKDAQF 159
>gi|398823883|ref|ZP_10582234.1| RNA methyltransferase, RsmD family [Bradyrhizobium sp. YR681]
gi|398225408|gb|EJN11679.1| RNA methyltransferase, RsmD family [Bradyrhizobium sp. YR681]
Length = 185
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 8/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + L SP D+RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNLASPSSRDIRPTADRLRESVFNILVHAYDDP--IPDARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA SRG V FV+ + +L N+E G V+ ++ R T L A
Sbjct: 59 LGIEASSRGAKFVLFVD-NGAEARALLRNNVETLGLGGVTKVYR-RDATDLGPAHPVE-- 114
Query: 229 DGPFDYMSVTPPY 241
PF + + PPY
Sbjct: 115 --PFSLVFLDPPY 125
>gi|373116165|ref|ZP_09530321.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
7_1_58FAA]
gi|371669629|gb|EHO34728.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
7_1_58FAA]
Length = 181
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 31/190 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +L G++ RP + VK + F+I+Q + R LDL+ GTG
Sbjct: 1 MRVITGTARGMRLKELPGLETRPTTDKVKESVFNIVQF------DVEGRRVLDLFGGTGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FV++ + V+ NL T + + FL G
Sbjct: 55 MGIEALSRGAASCTFVDVRKEAAA-VIRANLAHTKLEEQGKVVQGDYLAFL------TGC 107
Query: 229 DGPFDYMSVTPPYTAVDYE-VVEYPLRTDMLDTCGCLV-----------------KIKDR 270
FD + + PPY A E +E + D++ G +V K +D
Sbjct: 108 REKFDLVFLDPPYGAGMLEKALEAIAKIDIMTENGIIVCESAAESALPELAAPYAKGRDY 167
Query: 271 RFGRTHLAIY 280
R+G+ + +Y
Sbjct: 168 RYGKIKITLY 177
>gi|148239930|ref|YP_001225317.1| N6-adenine-specific methylase [Synechococcus sp. WH 7803]
gi|147848469|emb|CAK24020.1| N6-adenine-specific methylase [Synechococcus sp. WH 7803]
Length = 206
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 83/188 (44%), Gaps = 24/188 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GG+ +L SP+G RP V+ A ++L L WLDL+SG+G
Sbjct: 6 LRMIGGR----RLRSPQGQGTRPTTARVREALMNMLAGV------LEDAHWLDLFSGSGV 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF--LDVSSIHTVRVET--FLE--RA 222
+G EAI RG S V VE + + + + NLE + I +R + +LE R
Sbjct: 56 MGCEAIQRGASRVWAVENNARIAA-ICRQNLELVAASRKEPIEIRVIRKDLMPWLEAGRP 114
Query: 223 EQFVGKDGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGP 282
E PF + V PPY A Y+ LRT + LV + R P
Sbjct: 115 ENVE----PFSLVYVDPPYAAGQYQATLEGLRTRNWLSNDALVICEHASHDRLDPP---P 167
Query: 283 DWAQKKRK 290
DW + R+
Sbjct: 168 DWTEVDRR 175
>gi|83859465|ref|ZP_00952986.1| hypothetical protein OA2633_13710 [Oceanicaulis sp. HTCC2633]
gi|83852912|gb|EAP90765.1| hypothetical protein OA2633_13710 [Oceanicaulis alexandrii
HTCC2633]
Length = 187
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 5/134 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + + + +PKG RP + V+ + F+ L A L R +DL++G+G+
Sbjct: 1 MRIVAGAHKGRAITAPKGDKTRPTTDRVRESVFNKLTHAA-WGVELEGLRVMDLFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EAISRG S FVE DP + N++ + +H R T L +G
Sbjct: 60 LGLEAISRGASFALFVETDP-AARGAIRTNVDSLQLFGCTKLHR-RSATDLGPKPANMGT 117
Query: 229 DGPFDYMSVTPPYT 242
PFD + + PPY
Sbjct: 118 --PFDLVFLDPPYA 129
>gi|402831880|ref|ZP_10880551.1| RNA methyltransferase, RsmD family [Capnocytophaga sp. CM59]
gi|402280468|gb|EJU29176.1| RNA methyltransferase, RsmD family [Capnocytophaga sp. CM59]
Length = 179
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 91/197 (46%), Gaps = 40/197 (20%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R K+L++PK + VRP M+ K + F+IL + L + LDL++GTG+
Sbjct: 1 MRIISGTHRGKQLIAPKNLPVRPTMDFAKESLFNILNNY----FFLDSIKVLDLFAGTGN 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR--VETFLERAEQFV 226
+ E SRGC E+ V+ P V + T I V+ V T+L+R+
Sbjct: 57 ISYEFGSRGCPEITAVDSHPACVQYI-----RKTAEALAYPIEVVKSDVFTYLDRSL--- 108
Query: 227 GKDGPFDYMSVTPPYTAVDYE------VVEYPLRTDMLDTCGCLV-----KI-------- 267
+D + PPY D E ++E ++L G L+ K+
Sbjct: 109 ---SQYDVIFADPPY---DIEPDSLERLIETVFERNLLSEDGLLIVEHSSKVHLEEDPHF 162
Query: 268 -KDRRFGRTHLAIYGPD 283
++RR+G T +I+ D
Sbjct: 163 QEERRYGGTTFSIFNND 179
>gi|227877353|ref|ZP_03995424.1| possible rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus
crispatus JV-V01]
gi|256848713|ref|ZP_05554147.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
MV-1A-US]
gi|262045879|ref|ZP_06018843.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
MV-3A-US]
gi|227863021|gb|EEJ70469.1| possible rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus
crispatus JV-V01]
gi|256714252|gb|EEU29239.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
MV-1A-US]
gi|260573838|gb|EEX30394.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
MV-3A-US]
Length = 182
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 10/134 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L + K RP + VK + F+ L G LDLY+G+G+
Sbjct: 1 MRIISGKYAKRNLFTLKSNRTRPTSDKVKESLFNSLGQF------FHGGNVLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRGC V+++ + ++ N+ T +++ +R L + F
Sbjct: 55 LGIEAVSRGCDHASLVDINHAACT-IIKKNVALTKEEQRFNVYNMRSSAAL---KLFSEN 110
Query: 229 DGPFDYMSVTPPYT 242
D FD + + PPY
Sbjct: 111 DEKFDLVFLDPPYA 124
>gi|295836312|ref|ZP_06823245.1| RsmD family RNA methyltransferase [Streptomyces sp. SPB74]
gi|295825954|gb|EFG64569.1| RsmD family RNA methyltransferase [Streptomyces sp. SPB74]
Length = 195
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 14/146 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP E + F ++ G P L R LDLY G+G
Sbjct: 1 MTRVIAGTAGGRRLAVPPGTGTRPTSERAREGLFSTWEALLGGP--LDGERVLDLYGGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG + VE D V + +V + E +A Q V
Sbjct: 59 AVGLEALSRGAAHALLVESDARAVRTIRA---------NVRDLGLPGAEVRQGKAAQIVA 109
Query: 228 K---DGPFDYMSVTPPYTAVDYEVVE 250
+ P+D + + PPY D E+ E
Sbjct: 110 GPPPEAPYDLVFLDPPYAVPDAELGE 135
>gi|395225961|ref|ZP_10404467.1| RNA methyltransferase, RsmD family [Thiovulum sp. ES]
gi|394445852|gb|EJF06720.1| RNA methyltransferase, RsmD family [Thiovulum sp. ES]
Length = 185
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 22/187 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGR-WLDLYSGTG 167
+++ GGK + +K+ P RP +V+ + FD LQ+ GR +++L++G+G
Sbjct: 5 IKIDGGKYKGQKIELPNIETTRPSKSIVRNSIFDTLQTEIA-------GRDFVELFAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVL---------IPNLEWTGFLDVSSIHTVRVETF 218
SVG EA+SRG + V F E + + + I LE F + S I +
Sbjct: 58 SVGFEALSRGANRVFFFEQNREALKTLKRNQRNFSEEIQILEGDSFQNFSKISNELEDAI 117
Query: 219 LERAEQFVGKDGPFDYMSVT-----PPYTAVDYEVVEYPLRTDMLDTCGCLVKIKDRRFG 273
L F ++G + T P+ + + E+ + G L K+K ++FG
Sbjct: 118 LYIDPPFSIREGMENIYQKTIELFERPHRNIGILIFEHLSSEKFPEKIGELEKVKSKKFG 177
Query: 274 RTHLAIY 280
+T L+ Y
Sbjct: 178 KTTLSYY 184
>gi|449128921|ref|ZP_21765158.1| RsmD family RNA methyltransferase [Treponema denticola SP33]
gi|448939083|gb|EMB20005.1| RsmD family RNA methyltransferase [Treponema denticola SP33]
Length = 186
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 43/194 (22%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG + +++ PKG+ +RP M+ ++ + F IL G +LDL++G+G
Sbjct: 1 MRITGGSLKNRQVECPKGI-IRPAMDRMRESVFSILGDLSGLS-------FLDLFTGSGV 52
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
G+EA SRG V+ VE D P ++ NV + + + + ETF++RA++
Sbjct: 53 CGLEAYSRGAYPVYLVEKDADKFPVLLKNVSMADKKL-------ECKRMPAETFIKRAKE 105
Query: 225 FVGKDGPFDYMSVTPPY-TAVDYEVVE-----------------YPLRTDMLDTCGCLVK 266
FD + + PP+ E++E P M T G L K
Sbjct: 106 ------SFDIIYLDPPFPYKFHIELLEKIEESKILKEGGLVMMHRPSEKAMPQTIGSLTK 159
Query: 267 IKDRRFGRTHLAIY 280
+R +GR+ + Y
Sbjct: 160 SDERVYGRSIVDFY 173
>gi|363897513|ref|ZP_09324052.1| RsmD family RNA methyltransferase [Oribacterium sp. ACB7]
gi|361959010|gb|EHL12307.1| RsmD family RNA methyltransferase [Oribacterium sp. ACB7]
Length = 188
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L +P G+D RP + +K F+I+Q L LDL++G+G+
Sbjct: 1 MRVIAGTARRMNLKTPDGLDTRPTQDRIKETLFNIIQ------FDLMNKDVLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + F + + + NL+ T F + S + + + + K
Sbjct: 55 LGIEALSRGAARAVFCDSARQAIL-CIEENLQKTHFKEQSLVLSGDYNGAI---NSLMRK 110
Query: 229 DGPFDYMSVTPPY 241
D F + + PPY
Sbjct: 111 DYHFGLVFMDPPY 123
>gi|323135794|ref|ZP_08070877.1| methyltransferase [Methylocystis sp. ATCC 49242]
gi|322398885|gb|EFY01404.1| methyltransferase [Methylocystis sp. ATCC 49242]
Length = 185
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG R + L +P+ +RP + ++ + FDIL A G P + +DLY+GTG+
Sbjct: 1 MRIVGGALRGRALSAPRSQAIRPTSDRLRESVFDILAHAFGDPVA--GAAVIDLYAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+G+EA+SRG + FV+ D +L N+E G V+ +
Sbjct: 59 LGLEALSRGAARALFVD-DGAEARALLRANIEALGLGGVTRV 99
>gi|295099932|emb|CBK89021.1| RNA methyltransferase, RsmD family [Eubacterium cylindroides T2-87]
Length = 182
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 15/158 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + L S KG RP + VKGA F S GG S GR LD YSGTG+
Sbjct: 1 MRIVAGKYGSRPLKSCKGDTTRPTADKVKGAVFS---SLGG---SFDSGRMLDCYSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG VE D + NV+ N++ + I + + + R ++
Sbjct: 55 MALEALSRGMKFATMVEKDRMAL-NVICENVKSLQEKNCEIISG-SIFSVMNRLKE---- 108
Query: 229 DGPFDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLV 265
+D + + PPY + E++E + +++T G +V
Sbjct: 109 --AYDLVYIDPPYKEEKNVELIEKLDQLSLINTNGMVV 144
>gi|291437034|ref|ZP_06576424.1| DNA methylase [Streptomyces ghanaensis ATCC 14672]
gi|291339929|gb|EFE66885.1| DNA methylase [Streptomyces ghanaensis ATCC 14672]
Length = 195
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 14/149 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F Q+ G P L R LDLY+G+G
Sbjct: 1 MTRVIAGAAGGRRLAVPPGNGTRPTSDRAREGLFSTWQALLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG VE D V V + S+ E +AEQ +
Sbjct: 59 AVGLEALSRGAGHALLVEADARAVRTVRD---------NARSLGLPGAEVRSGKAEQVIR 109
Query: 228 K---DGPFDYMSVTPPYTAVDYEVVEYPL 253
D P+D + + PPY D ++ E L
Sbjct: 110 TAPPDEPYDLVFLDPPYAVSDDDLREILL 138
>gi|57239485|ref|YP_180621.1| methylase [Ehrlichia ruminantium str. Welgevonden]
gi|57161564|emb|CAH58492.1| conserved hypothetical protein [Ehrlichia ruminantium str.
Welgevonden]
Length = 194
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+L+++ GK R +K+ S K + RP M +++ + F+I+ S S++ + LDL+ G+G
Sbjct: 1 MLRIISGKYRGRKIFSDKFLSARPAMSIIRESVFNIISS----RMSIQGCKVLDLFCGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
S+ EA+SRG + V+++ + + ++ E+ G D + VE +Q
Sbjct: 57 SLSFEALSRGAASSLLVDINHYNL-RLVKQTSEYLGLTDNVVLMCCDVERLSIANDQ--- 112
Query: 228 KDGPFDYMSVTPPYT 242
+D + V PPY
Sbjct: 113 ----YDIVFVDPPYN 123
>gi|310828884|ref|YP_003961241.1| hypothetical protein [Eubacterium limosum KIST612]
gi|308740618|gb|ADO38278.1| hypothetical protein ELI_3316 [Eubacterium limosum KIST612]
Length = 189
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 94/193 (48%), Gaps = 32/193 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGR-WLDLYSGTG 167
++V+ G+ R KL+S G +RP + VKGA F+ +Q LR + ++DL+ G+G
Sbjct: 1 MRVIAGEKRGTKLVSIDGDFIRPTTDKVKGAVFNSVQ------VELREAQVFVDLFGGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG + +F ++ + ++ NL+ TGF + + E + F+
Sbjct: 55 AMGIEALSRGIPQAYFFDISRNSIG-IIKKNLKLTGFESKAIVKNCSAEEGI----GFLC 109
Query: 228 KDG-PFDYMSVTPPYT--AVDYEVVEYPLRTDMLDTCGCLV-----------------KI 267
K+ D + + PPY +VE +L++ G ++ K
Sbjct: 110 KNSVKCDMIYMDPPYKDGISMISIVEKICEKKILNSDGIIMMEHEKSVIMPIAIKSFAKY 169
Query: 268 KDRRFGRTHLAIY 280
K++++G T ++ Y
Sbjct: 170 KEKKYGTTLVSFY 182
>gi|225686061|ref|YP_002734033.1| methyltransferase [Brucella melitensis ATCC 23457]
gi|256262818|ref|ZP_05465350.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
63/9]
gi|260564348|ref|ZP_05834833.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|265989558|ref|ZP_06102115.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|265993340|ref|ZP_06105897.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|384212738|ref|YP_005601821.1| methyltransferase [Brucella melitensis M5-90]
gi|384409838|ref|YP_005598458.1| methyltransferase [Brucella melitensis M28]
gi|384446368|ref|YP_005660586.1| methyltransferase [Brucella melitensis NI]
gi|225642166|gb|ACO02079.1| methyltransferase [Brucella melitensis ATCC 23457]
gi|260151991|gb|EEW87084.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|262764210|gb|EEZ10242.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|263000227|gb|EEZ12917.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|263092639|gb|EEZ16860.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
63/9]
gi|326410385|gb|ADZ67449.1| methyltransferase [Brucella melitensis M28]
gi|326553678|gb|ADZ88317.1| methyltransferase [Brucella melitensis M5-90]
gi|349744365|gb|AEQ09907.1| methyltransferase [Brucella melitensis NI]
Length = 187
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L++P +RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNIL--AHSFPDKVEGVRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER-AEQF-- 225
+G+EA+SRG FVE + +L N+E G + I L R A Q
Sbjct: 59 LGLEALSRGARYATFVE-ESADGRGILRQNIEALGLQGHTKI--------LRRDACQLGI 109
Query: 226 VGKDGPFDYMSVTPPY 241
VG PFD + PPY
Sbjct: 110 VGTMEPFDLVFADPPY 125
>gi|374296568|ref|YP_005046759.1| RNA methyltransferase, RsmD family [Clostridium clariflavum DSM
19732]
gi|359826062|gb|AEV68835.1| RNA methyltransferase, RsmD family [Clostridium clariflavum DSM
19732]
Length = 165
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPW 189
RP + VKG+ F+I+ + LDL++GTGS+GIEA+SRG FV+
Sbjct: 3 RPTSDKVKGSIFNIIAPV------IFDKDVLDLFAGTGSIGIEALSRGARRAVFVDKSRE 56
Query: 190 VVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPY 241
++ NL T F + + IH + V T L Q D FD + + PPY
Sbjct: 57 -CCQIIKENLNHTKFTERAEIHAMDVCTALSMLSQM---DSKFDIIFLDPPY 104
>gi|58579464|ref|YP_197676.1| methylase [Ehrlichia ruminantium str. Welgevonden]
gi|58418090|emb|CAI27294.1| Putative Methylase [Ehrlichia ruminantium str. Welgevonden]
Length = 194
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+L+++ GK R +K+ S K + RP M +++ + F+I+ S S++ + LDL+ G+G
Sbjct: 1 MLRIISGKYRGRKIFSDKFLSARPAMSIIRESVFNIISS----RMSIQGCKVLDLFCGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
S+ EA+SRG + V+++ + + ++ E+ G D + VE +Q
Sbjct: 57 SLSFEALSRGAASSLLVDINHYNL-RLVKQTSEYLGLTDNVVLMCCDVERLSIANDQ--- 112
Query: 228 KDGPFDYMSVTPPYT 242
+D + V PPY
Sbjct: 113 ----YDIVFVDPPYN 123
>gi|306840966|ref|ZP_07473707.1| methyltransferase, putative [Brucella sp. BO2]
gi|306289023|gb|EFM60288.1| methyltransferase, putative [Brucella sp. BO2]
Length = 236
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L++P +RP + + + F+IL A P + R LDL++GTG+
Sbjct: 50 VRIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNIL--AHSFPDKVEGVRVLDLFAGTGA 107
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER-AEQF-- 225
+G+EA+SRG FVE + +L N+E G HT L R A Q
Sbjct: 108 LGLEALSRGARYATFVE-ESAEGRGILRQNIEALGLQG----HT----KILRRDACQLGI 158
Query: 226 VGKDGPFDYMSVTPPY 241
VG PFD + PPY
Sbjct: 159 VGTMEPFDLVFADPPY 174
>gi|306845523|ref|ZP_07478092.1| methyltransferase, putative [Brucella inopinata BO1]
gi|306273844|gb|EFM55671.1| methyltransferase, putative [Brucella inopinata BO1]
Length = 211
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L++P +RP + + + F+IL A P + R LDL++GTG+
Sbjct: 25 VRIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNIL--AHSFPDKVEGVRVLDLFAGTGA 82
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER-AEQF-- 225
+G+EA+SRG FVE + +L N+E G + I L R A Q
Sbjct: 83 LGLEALSRGARYATFVE-ESAEGRGILRQNIEALGLQGHTKI--------LRRDACQLGI 133
Query: 226 VGKDGPFDYMSVTPPY 241
VG PFD + PPY
Sbjct: 134 VGTMEPFDLVFADPPY 149
>gi|449131589|ref|ZP_21767799.1| RsmD family RNA methyltransferase [Treponema denticola SP37]
gi|448938946|gb|EMB19872.1| RsmD family RNA methyltransferase [Treponema denticola SP37]
Length = 186
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 43/194 (22%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG + +++ PKG+ +RP M+ ++ + F IL G +LDL++G+G
Sbjct: 1 MRITGGSLKNRQVECPKGI-IRPAMDRMRESVFSILGDLSGLS-------FLDLFTGSGV 52
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
G+EA SRG V+ VE D P ++ NV + + + + ETF++RA++
Sbjct: 53 CGLEAYSRGAYPVYLVEKDADKFPVLLKNVSMADKKL-------ECKRMPAETFIKRAKE 105
Query: 225 FVGKDGPFDYMSVTPPY-TAVDYEVVE-----------------YPLRTDMLDTCGCLVK 266
FD + + PP+ E++E P M T G L K
Sbjct: 106 ------SFDIIYLDPPFPYKFHIELLEKIAESKILKEGGLVMMHRPSEKAMPQTIGSLTK 159
Query: 267 IKDRRFGRTHLAIY 280
+R +GR+ + Y
Sbjct: 160 SDERVYGRSIVDFY 173
>gi|319766111|ref|YP_004131612.1| methyltransferase [Geobacillus sp. Y412MC52]
gi|317110977|gb|ADU93469.1| methyltransferase [Geobacillus sp. Y412MC52]
Length = 204
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 85/193 (44%), Gaps = 30/193 (15%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++++V+ G + ++L + GM RP + VK A F+++ G LDL++G+
Sbjct: 5 KMMRVISGTCKGRRLQAVPGMSTRPTTDKVKEAIFNMIGP------YFSGGNGLDLFAGS 58
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G +GIEA+SRG V FV+ D V V N+ G + I+ ERA + V
Sbjct: 59 GGLGIEALSRGIERVIFVDHDRKAVQTVR-KNVAACGLEKRAEIYC----NDAERALKAV 113
Query: 227 GKDG-PFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKI 267
K G F + + PPY + V E+ ++ + G L +
Sbjct: 114 AKRGLRFAVIFLDPPYKEKQWPTLLSSIAERQLLEPRGVVVAEHSAEAELPEEVGGLTRW 173
Query: 268 KDRRFGRTHLAIY 280
K +G T + IY
Sbjct: 174 KRETYGITGVTIY 186
>gi|456357797|dbj|BAM92242.1| methyltransferase [Agromonas oligotrophica S58]
Length = 184
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + + SP D+RP + ++ A F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNIASPASRDIRPTQDRLREALFNILVHAYDEP--IEGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+GIEA+SRG + FV+ + +L N+E G V+ ++
Sbjct: 59 LGIEAVSRGAAFTLFVD-NGAEARALLRNNVEALGLGGVTKVY 100
>gi|365845621|ref|ZP_09386382.1| RNA methyltransferase, RsmD family [Flavonifractor plautii ATCC
29863]
gi|364559688|gb|EHM37657.1| RNA methyltransferase, RsmD family [Flavonifractor plautii ATCC
29863]
Length = 181
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 31/190 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +L G++ RP + VK + F+I+Q + R LDL+ GTG
Sbjct: 1 MRVITGTARGMRLKELPGLETRPTTDKVKESVFNIVQF------DVEGRRVLDLFGGTGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FV++ + V+ NL T + + FL G
Sbjct: 55 MGIEALSRGAASCTFVDVRKEAAA-VIRANLAHTKLEEQGKVVQGDYLAFL------TGC 107
Query: 229 DGPFDYMSVTPPYTAVDYE-VVEYPLRTDMLDTCGCLV-----------------KIKDR 270
FD + + PPY A E +E + D++ G +V K +D
Sbjct: 108 REKFDLVFLDPPYGAGMLEKALEAIAKIDIMTENGIIVCESAAESVLPELAAPYAKGRDY 167
Query: 271 RFGRTHLAIY 280
R+G+ + +Y
Sbjct: 168 RYGKIKITLY 177
>gi|297566490|ref|YP_003685462.1| hypothetical protein [Meiothermus silvanus DSM 9946]
gi|296850939|gb|ADH63954.1| Protein of unknown function methylase putative [Meiothermus
silvanus DSM 9946]
Length = 172
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 77/163 (47%), Gaps = 26/163 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
LQ+LGG AR +L P RP ++ A FD L+S P R GR+LDLY+G+G+
Sbjct: 3 LQILGGTARGVRLEVPT--SARPSPVRLRKALFDYLRSR--YP---RKGRFLDLYAGSGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVV----SNVLIPNLEWTGFLDVSSIHTVRVE-TFLERAE 223
+G+EA S G EV VE DP V +N L +LE VR+E +ER
Sbjct: 56 IGLEAASEGF-EVVLVEKDPQAVRILRANALKAHLE------------VRIEPQSVERYL 102
Query: 224 QFVGKDG-PFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLV 265
+ G F + PPY E E L+ D+ G +
Sbjct: 103 ALAARRGEQFTVAFMAPPYPHNLLEDFERLLQADLAAPGGIYI 145
>gi|17989383|ref|NP_542016.1| methyltransferase [Brucella melitensis bv. 1 str. 16M]
gi|17985256|gb|AAL54280.1| methyltransferase [Brucella melitensis bv. 1 str. 16M]
Length = 221
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L++P +RP + + + F+IL A P + R LDL++GTG+
Sbjct: 35 VRIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNIL--AHSFPDKVEGVRVLDLFAGTGA 92
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER-AEQF-- 225
+G+EA+SRG FVE + +L N+E G + I L R A Q
Sbjct: 93 LGLEALSRGARYATFVE-ESADGRGILRQNIEALGLQGHTKI--------LRRDACQLGI 143
Query: 226 VGKDGPFDYMSVTPPY 241
VG PFD + PPY
Sbjct: 144 VGTMEPFDLVFADPPY 159
>gi|327399183|ref|YP_004340052.1| methyltransferase [Hippea maritima DSM 10411]
gi|327181812|gb|AEA33993.1| methyltransferase [Hippea maritima DSM 10411]
Length = 177
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 86/194 (44%), Gaps = 42/194 (21%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRPGRWLDLYSGTG 167
++++ GK + K+L K ++RP +VK + FD ++ GC +LDL++G+G
Sbjct: 1 MRIIAGKLKYKRLYFKKNQNLRPTRNIVKKSFFDTMRGLIEGCV-------FLDLFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
SVG+EA+SRG V FV+ VS + F +V I + AE+F+
Sbjct: 54 SVGMEALSRGAKRVVFVDSSNDSVS---LIRKNTNNFDNVDVIKS--------DAEKFL- 101
Query: 228 KDGPF----DYMSVTPPYTAVDYEV----------------VEYPLRTDMLDTCGCLVKI 267
D P + V PPY A D EV VE+ + + G
Sbjct: 102 -DNPLVRSAGVVYVDPPY-AFDVEVFLEKLFKVVNRNAIVCVEHDKKRHLRGDFGLFKCF 159
Query: 268 KDRRFGRTHLAIYG 281
K + FG+ L +G
Sbjct: 160 KSKNFGKNTLDYFG 173
>gi|319403674|emb|CBI77259.1| putative enzyme [Bartonella rochalimae ATCC BAA-1498]
Length = 185
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 14/136 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GGK + L P G+ +RP + + + F+IL S R R LDL++GTG+
Sbjct: 1 MRVIGGKFSGRILAKPLGLSIRPTTDRTRESLFNILTSREENFWVNR--RVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FVE + +++ N+E G V I L R +G
Sbjct: 59 LGIEALSRGAKTAVFVE-NTIEGRSLIQKNIETLGLQGVGRI--------LRRDATKLGN 109
Query: 229 DG---PFDYMSVTPPY 241
G PFD + PPY
Sbjct: 110 IGTMLPFDVIFADPPY 125
>gi|193212900|ref|YP_001998853.1| methyltransferase [Chlorobaculum parvum NCIB 8327]
gi|193086377|gb|ACF11653.1| methyltransferase [Chlorobaculum parvum NCIB 8327]
Length = 180
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 11/141 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+Q+ G+ R +K+ D+RP VK + FD L + LDL++G G+
Sbjct: 1 MQIHAGRYRGRKIRHLPSRDIRPCTSRVKKSLFDTLAAR----IDFEGIDVLDLFAGFGN 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EA+SRG V FVE + + + + G + V FL+R E
Sbjct: 57 LGFEALSRGARSVCFVEQNRKAL-DTMKQTAADIGVQSSARFVMADVSAFLKRQE----- 110
Query: 229 DGPFDYMSVTPPYTAVDYEVV 249
GPF+ + PPY DYE++
Sbjct: 111 -GPFELVFCDPPYRWEDYELL 130
>gi|239991054|ref|ZP_04711718.1| putative RNA methylase [Streptomyces roseosporus NRRL 11379]
gi|291448056|ref|ZP_06587446.1| RNA methylase [Streptomyces roseosporus NRRL 15998]
gi|291351003|gb|EFE77907.1| RNA methylase [Streptomyces roseosporus NRRL 15998]
Length = 194
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 15/149 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F Q+ G +L R DLY+G+G
Sbjct: 1 MTRVIAGSAGGRRLAVPPGTGTRPTSDRAREGLFSTWQALLG---TLEGTRVADLYAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV- 226
+VG+EA+SRG VE DP V V +V ++ E +AEQ V
Sbjct: 58 AVGLEALSRGAVHALLVEADPKAVRTVRD---------NVRTLGLPGAEVRAGKAEQIVT 108
Query: 227 --GKDGPFDYMSVTPPYTAVDYEVVEYPL 253
P+D + + PPY D ++ E L
Sbjct: 109 GPAPSDPYDIVFLDPPYAVTDDDLREILL 137
>gi|398829664|ref|ZP_10587861.1| RNA methyltransferase, RsmD family [Phyllobacterium sp. YR531]
gi|398216591|gb|EJN03137.1| RNA methyltransferase, RsmD family [Phyllobacterium sp. YR531]
Length = 185
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L +P+ +RP + + + F+IL P R LDL++GTG+
Sbjct: 1 MRIVGGKFRGRSLATPETNAIRPTTDRTRESLFNILVH--NYPEKFESTRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG F+E + ++ N+E G + + + + R T L A G
Sbjct: 59 LGLEAMSRGARYGIFIE-ESAQGRGLIRTNIEAFGLMGATKVFS-RDATKLGDA----GN 112
Query: 229 DGPFDYMSVTPPY 241
PFD + PPY
Sbjct: 113 VEPFDLVFADPPY 125
>gi|406832532|ref|ZP_11092126.1| methyltransferase [Schlesneria paludicola DSM 18645]
Length = 206
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 11/141 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTG 167
++++ G+ RR+ LL+ G RP+++ K FD ++ PG + LD+YSGTG
Sbjct: 1 MRIIAGQFRRRTLLTNPGQTTRPIIDRAKVMLFDHIRHR-------MPGSKVLDIYSGTG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
S+G EA+SRG V F E D +L+ N+ D + RV+ + G
Sbjct: 54 SLGFEALSRGAKSVVFCEQDH-RAHELLVKNVASLKVEDRTLCW--RVDCLRCSFKAQGG 110
Query: 228 KDGPFDYMSVTPPYTAVDYEV 248
+ P+D + PPY ++ E+
Sbjct: 111 EWYPYDIVFFDPPYVMIEKEL 131
>gi|297530735|ref|YP_003672010.1| methyltransferase [Geobacillus sp. C56-T3]
gi|297253987|gb|ADI27433.1| methyltransferase [Geobacillus sp. C56-T3]
Length = 204
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 85/193 (44%), Gaps = 30/193 (15%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++++V+ G + ++L + GM RP + VK A F+++ G LDL++G+
Sbjct: 5 KMMRVISGTCKGRRLQAVPGMSTRPTTDKVKEAIFNMIGP------YFSGGNGLDLFAGS 58
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G +GIEA+SRG V FV+ D V V N+ G + I+ ERA + V
Sbjct: 59 GGLGIEALSRGIERVIFVDHDRKAVQTVR-KNVAACGLEKRAEIYC----NDAERALKAV 113
Query: 227 GKDG-PFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKI 267
K G F + + PPY + V E+ ++ + G L +
Sbjct: 114 AKRGLRFAVIFLDPPYKEKQWPTLLSSIVERQLLEPHGVVVAEHSAEAELPEEVGGLTRW 173
Query: 268 KDRRFGRTHLAIY 280
K +G T + IY
Sbjct: 174 KRETYGITGVTIY 186
>gi|265984949|ref|ZP_06097684.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|264663541|gb|EEZ33802.1| conserved hypothetical protein [Brucella sp. 83/13]
Length = 208
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L++P +RP + + + F+IL A P + R LDL++GTG+
Sbjct: 22 VRIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNIL--AHSFPDKVEGVRVLDLFAGTGA 79
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER-AEQF-- 225
+G+EA+SRG FVE + +L N+E G + I L R A Q
Sbjct: 80 LGLEALSRGARYATFVE-ESAEGRGILRQNIEALGLQGHTKI--------LRRDACQLGI 130
Query: 226 VGKDGPFDYMSVTPPY 241
VG PFD + PPY
Sbjct: 131 VGTMEPFDLVFADPPY 146
>gi|218283085|ref|ZP_03489180.1| hypothetical protein EUBIFOR_01766 [Eubacterium biforme DSM 3989]
gi|218216154|gb|EEC89692.1| hypothetical protein EUBIFOR_01766 [Eubacterium biforme DSM 3989]
Length = 183
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 85/190 (44%), Gaps = 31/190 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + L SPK RP + +KGA F L + G +LD YSGTG+
Sbjct: 1 MRIVAGKYGSRSLKSPKNDATRPTQDKIKGAIFSSLGNI------FDGGNFLDCYSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG V+ + +S V+ N++ + I + T LER
Sbjct: 55 MGLEAVSRGMDHATLVDNNKGAIS-VIKENVKNLKADKETKIICGNIFTVLERLTL---- 109
Query: 229 DGPFDYMSVTPPYTAVDYE-VVEYPLRTDMLDTCGCLV-----------------KIKDR 270
+D + + PPY + E +++ DM+ G +V K K++
Sbjct: 110 --KYDVVYIDPPYAKQENEKLIQKLDDLDMVKLDGVIVVESLEEEVWPERIASFTKYKEK 167
Query: 271 RFGRTHLAIY 280
+G T ++ Y
Sbjct: 168 TYGITRISYY 177
>gi|49475073|ref|YP_033114.1| hypothetical protein BH02620 [Bartonella henselae str. Houston-1]
gi|49237878|emb|CAF27074.1| hypothetical protein BH02620 [Bartonella henselae str. Houston-1]
Length = 189
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GGK + L +P G +RP + + + F+I S G + R LDL++GTG+
Sbjct: 1 MRVVGGKFAGRVLFAPVGQSIRPTSDRTRESLFNIFASQEGQFWVNK--RILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FVE + ++ NLE L++ SI + L R +G
Sbjct: 59 LGIEALSRGAKAAVFVE-NSVEGRGLIQKNLEA---LELQSIGRI-----LRRDATKLGN 109
Query: 229 DG---PFDYMSVTPPY 241
G PFD + PPY
Sbjct: 110 IGTMLPFDVICADPPY 125
>gi|322690476|ref|YP_004220046.1| methylase [Bifidobacterium longum subsp. longum JCM 1217]
gi|320455332|dbj|BAJ65954.1| putative methylase [Bifidobacterium longum subsp. longum JCM 1217]
Length = 203
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 70/149 (46%), Gaps = 23/149 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L +PK RP + K A F L S G L R LDL++GTG+
Sbjct: 1 MRVISGRFKGVVLATPK-TGTRPTTDRTKEAIFSHLDSWG----VLDDARVLDLFAGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV------LIPNLEWTGFLDVSSIHTVRVETFLERA 222
+GIEA+SRG E+ VE + + L N W L + +++A
Sbjct: 56 LGIEALSRGARELVAVESSRPAAALITKTLAQLQKNRSWDASL--------KARVLVKKA 107
Query: 223 EQFVGKDG-PFDYMSVTPPYTAVDYEVVE 250
EQ G G PFD + + PPY YE E
Sbjct: 108 EQVAGGFGEPFDVIFIDPPYA---YETAE 133
>gi|455651576|gb|EMF30302.1| DNA methylase [Streptomyces gancidicus BKS 13-15]
Length = 195
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 14/146 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGAAGGRRLAVPPGQGTRPTSDRAREGLLSTWQSLLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG V VE D V V +V ++ E +AEQ V
Sbjct: 59 AVGLEALSRGAGHVLLVESDARAVRTVR---------ENVKALGLPGAEVRSGKAEQIVR 109
Query: 228 K---DGPFDYMSVTPPYTAVDYEVVE 250
+ P+D + + PPY D ++ E
Sbjct: 110 TAPPEQPYDVVFLDPPYAVPDADLRE 135
>gi|206889225|ref|YP_002248645.1| N6-adenine-specific methylase [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206741163|gb|ACI20220.1| N6-adenine-specific methylase [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 171
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDP 188
VRP +V+ A FDIL+ + ++DLY+G G VG+EA+ RG +EV FVE DP
Sbjct: 12 VRPTPAIVRKAIFDILRD-------VEDKIFIDLYAGKGFVGVEALKRGANEVIFVEKDP 64
Query: 189 WVVSNVLIPN-LEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYE 247
V + I N L+ D + ++ + +FL+ + +D + PPY + + E
Sbjct: 65 --VLCIFIKNSLQKKKLSDKARVYNMDAVSFLQDSSH------EYDIIFADPPYESGELE 116
Query: 248 VV 249
+
Sbjct: 117 KI 118
>gi|392411933|ref|YP_006448540.1| RNA methyltransferase, RsmD family [Desulfomonile tiedjei DSM 6799]
gi|390625069|gb|AFM26276.1| RNA methyltransferase, RsmD family [Desulfomonile tiedjei DSM 6799]
Length = 186
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ + +L+SP+ VRP ++ V+ A F L A + R LDL++GTG+
Sbjct: 1 MRIIAGRFKGLRLVSPRIKGVRPTLDRVREALFSTLGPA------VEGSRILDLFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
G EA+SRG V FV+ D V+ L N E G I V T L+R V +
Sbjct: 55 FGFEALSRGAQYVTFVDKDRR-VAETLKANTESLGLGHQIRIINADVPTALKR---LVQQ 110
Query: 229 DGPFDYMSVTPPY 241
F + + PPY
Sbjct: 111 AERFHVVFLDPPY 123
>gi|329936747|ref|ZP_08286454.1| DNA methylase [Streptomyces griseoaurantiacus M045]
gi|329303977|gb|EGG47860.1| DNA methylase [Streptomyces griseoaurantiacus M045]
Length = 195
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 72/161 (44%), Gaps = 17/161 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G+A+ ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGRAKGRRLSVPPGNGTRPTSDRAREGLFSTWQSLLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG V VE D V + ++ E +AEQ V
Sbjct: 59 AVGLEALSRGAGHVLLVEADARAARTVRE---------NARALGLPGAEVRAGKAEQTVR 109
Query: 228 K---DGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLV 265
P+D + + PPY D + E L L T G L
Sbjct: 110 TAPPSDPYDLVFLDPPYAVRDDALREILL---TLRTGGWLA 147
>gi|295425145|ref|ZP_06817850.1| probable methyltransferase [Lactobacillus amylolyticus DSM 11664]
gi|295065204|gb|EFG56107.1| probable methyltransferase [Lactobacillus amylolyticus DSM 11664]
Length = 182
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 31/194 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK ++ L + K RP + VK + F+ L Q G G LDLY+G+G
Sbjct: 1 MRIISGKYAKRNLFTLKSRKTRPTSDKVKESLFNSLGQFFNG-------GEVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG S V+++ + ++ N+ T D S+ + + L++ F
Sbjct: 54 ALGIEAVSRGYSHATLVDIN-YAAVEIIKKNVALTKEEDKFSVFKMPSKVALKK---FAE 109
Query: 228 KDGPFDYMSVTPPYT--AVDYEVVEYPLRTDMLDTCGCLVK----------------IKD 269
FD + + PPY + +++E L ++L+ +V IKD
Sbjct: 110 SGKKFDLVFLDPPYAKQKMKSDMIEM-LNNNLLNERAIVVAETDDQTILPEIAGFTLIKD 168
Query: 270 RRFGRTHLAIYGPD 283
G+T + IY D
Sbjct: 169 HHLGKTIVRIYRKD 182
>gi|403378859|ref|ZP_10920916.1| N6-adenine-specific methylase [Paenibacillus sp. JC66]
Length = 190
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 86/190 (45%), Gaps = 28/190 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR + L + G RP + VK A F IL L+ G LDL++GTG
Sbjct: 1 MRVISGTARGRPLKAVPGEGTRPTTDKVKEAVFSILNP------YLQGGWVLDLFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F++++ V V+ N++ GF + + ++ + L + +
Sbjct: 55 LGIEALSRGMDHAVFIDLERKSV-EVIRHNIDTAGFREQAEVYRNEAQRAL---KALAKR 110
Query: 229 DGPFDYMSVTPPY----------TAVDYE--------VVEYPLRTDMLDTCGCLVKIKDR 270
+ F + + PPY V YE V E+ +T L +I+
Sbjct: 111 EVKFALVFLDPPYRLKTMEELLLKLVGYELLEPEAIIVAEHDRSNRYPETVDGLQQIRRA 170
Query: 271 RFGRTHLAIY 280
+G T + IY
Sbjct: 171 DYGDTAITIY 180
>gi|261215708|ref|ZP_05929989.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
gi|260917315|gb|EEX84176.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
Length = 196
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L++P +RP + + + F+IL A P + R LDL++GTG+
Sbjct: 10 VRIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNIL--AHSFPDKVEGVRVLDLFAGTGA 67
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER-AEQF-- 225
+G+EA+SRG FVE + +L N+E G + I L R A Q
Sbjct: 68 LGLEALSRGARYATFVE-ESAEGRGILRQNIEALGLQGHTKI--------LRRDACQLGI 118
Query: 226 VGKDGPFDYMSVTPPY 241
VG PFD + PPY
Sbjct: 119 VGTMEPFDLVFADPPY 134
>gi|365896197|ref|ZP_09434281.1| putative methyltransferase [Bradyrhizobium sp. STM 3843]
gi|365423044|emb|CCE06823.1| putative methyltransferase [Bradyrhizobium sp. STM 3843]
Length = 184
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 8/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + + SP ++RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNIASPTSRNIRPTQDRLRESLFNILVHAYDNP--IEGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEAISRG + FV+ + +L N+E VS ++ R T L A
Sbjct: 59 LGIEAISRGAAFALFVDNGAEARA-LLRNNVEALALGGVSKVYR-RDATNLGPAHPVE-- 114
Query: 229 DGPFDYMSVTPPY 241
PF + + PPY
Sbjct: 115 --PFSLIFLDPPY 125
>gi|330813626|ref|YP_004357865.1| ribosomal RNA small subunit methyltransferase D [Candidatus
Pelagibacter sp. IMCC9063]
gi|327486721|gb|AEA81126.1| ribosomal RNA small subunit methyltransferase D [Candidatus
Pelagibacter sp. IMCC9063]
Length = 187
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK +++KL+ P RP+ + VK + F++L + LD++SG+GS
Sbjct: 1 MRIISGKFKKQKLILPDPKITRPLRDYVKESLFNLLVHSPLLQFQFGKSSILDIFSGSGS 60
Query: 169 VGIEAISRGCSEVHFVEMD 187
GIE +SRG S V F+E D
Sbjct: 61 FGIECLSRGASHVTFIEND 79
>gi|260101770|ref|ZP_05752007.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
gi|417007040|ref|ZP_11945249.1| hypothetical protein AAULH_05044 [Lactobacillus helveticus MTCC
5463]
gi|260084414|gb|EEW68534.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
gi|328468539|gb|EGF39541.1| hypothetical protein AAULH_05044 [Lactobacillus helveticus MTCC
5463]
Length = 182
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 29/193 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L + K RP + VK + F+ L G LDLY+G+G+
Sbjct: 1 MRIISGKYAKRNLFTLKSNKTRPTSDKVKESLFNSLGQF------FNGGNVLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG V+++ S ++ N+ T ++ S++ +R L + F
Sbjct: 55 LGIEAVSRGYDHASLVDINHAACS-IIKKNVALTKEENLFSVYNMRSNAAL---KLFAEN 110
Query: 229 DGPFDYMSVTPPYT----AVDYE--------------VVEYPLRTDMLDTCGCLVKIKDR 270
FD + + PPY A D V E T++ D G + IK+
Sbjct: 111 QEKFDLVFLDPPYAKEKIAKDMLQMNKLGLLNSSATIVAETDDHTELGDISGFSL-IKEH 169
Query: 271 RFGRTHLAIYGPD 283
G+T + IY D
Sbjct: 170 HLGKTIVRIYRKD 182
>gi|300870865|ref|YP_003785736.1| yhhF N6 adenine specific methylase [Brachyspira pilosicoli 95/1000]
gi|431808322|ref|YP_007235220.1| yhhF N6 adenine specific methylase [Brachyspira pilosicoli
P43/6/78]
gi|300688564|gb|ADK31235.1| yhhF N6 adenine specific methylase [Brachyspira pilosicoli 95/1000]
gi|430781681|gb|AGA66965.1| yhhF N6 adenine specific methylase [Brachyspira pilosicoli
P43/6/78]
Length = 182
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 17/157 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ ++ G + KK+++PK D RP V+ A F+I+ + +LDL +G+G+
Sbjct: 1 MHIISGYKKNKKIITPK-RDFRPTQGKVREALFNIIDANDKT--------FLDLCAGSGA 51
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG EA+SRG F+E+D V + N + + I V + +++R
Sbjct: 52 VGFEALSRGAKFAAFIEIDREAVKTIF-TNAKNIFEENQYKIKRVSADDYVKRT------ 104
Query: 229 DGPFDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGCL 264
+ FD + PPY + + YEV +L+ G L
Sbjct: 105 NDTFDIIFFDPPYHSKIYYEVFLNIFERKLLNDNGYL 141
>gi|260904760|ref|ZP_05913082.1| putative methyltransferase [Brevibacterium linens BL2]
Length = 248
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + KL++P G + RP + VK + F +L G L+ LDL++G+G
Sbjct: 1 MRIIAGAYKGSKLVAPGGSNTRPTSDRVKESLFSMLDGYG----VLQAANVLDLFAGSGG 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
+G EA+SRG +EV FV+ + + N G + IH+ V +FL
Sbjct: 57 LGFEAMSRGAAEVDFVD-SAGASARAVEANAAKLGIDHSTRIHSSDVVSFL 106
>gi|417910742|ref|ZP_12554458.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU105]
gi|418622142|ref|ZP_13184898.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU123]
gi|420187646|ref|ZP_14693666.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM039]
gi|420210969|ref|ZP_14716358.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM001]
gi|341654930|gb|EGS78666.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU105]
gi|374827517|gb|EHR91379.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU123]
gi|394256088|gb|EJE01024.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM039]
gi|394282906|gb|EJE27088.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM001]
Length = 180
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 13/158 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLYDVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG ++ FV+ + V V+ NL + + ++ + L + +
Sbjct: 53 LGIEALSRGMDKMIFVDQNFKAVK-VIKANLNQLDLMSQAEVYKNNADRAL---KALAKR 108
Query: 229 DGPFDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLV 265
+ F+ + + PPY + E + ++L G +V
Sbjct: 109 EIQFNVIFLDPPYNKGLINEAISRIAEFNLLKENGIIV 146
>gi|419778115|ref|ZP_14304017.1| RNA methyltransferase, RsmD family [Streptococcus oralis SK10]
gi|383187868|gb|EIC80312.1| RNA methyltransferase, RsmD family [Streptococcus oralis SK10]
Length = 179
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 13/134 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRK-AQAIIAENIQMTK--EVSKFQLLKMEA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYT 242
GPFD + + PPY
Sbjct: 108 KGPFDLVFLDPPYA 121
>gi|386382914|ref|ZP_10068473.1| methyltransferase [Streptomyces tsukubaensis NRRL18488]
gi|385669624|gb|EIF92808.1| methyltransferase [Streptomyces tsukubaensis NRRL18488]
Length = 200
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 15/149 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F Q+ G +R DLY+G+G
Sbjct: 1 MTRVIAGTAGGRRLAVPPGTGTRPTSDRAREGLFSTWQALLGTVEGIRVA---DLYAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG + VE D + V+ N V ++ E RAEQ V
Sbjct: 58 AVGLEALSRGAAHALLVEADA-RAARVIREN--------VRALGLPGAEVRTGRAEQIVA 108
Query: 228 K---DGPFDYMSVTPPYTAVDYEVVEYPL 253
P+D + + PPY VD ++ E L
Sbjct: 109 GPAPTAPYDAVFLDPPYAVVDDDLREILL 137
>gi|58617518|ref|YP_196717.1| methylase [Ehrlichia ruminantium str. Gardel]
gi|58417130|emb|CAI28243.1| Putative Methylase [Ehrlichia ruminantium str. Gardel]
Length = 194
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+L+++ GK R +K+ S K + RP M +++ + F+I+ S S++ + LDL+ G+G
Sbjct: 1 MLRIISGKYRGRKIFSDKFLSARPAMSIIRESVFNIISS----RMSIQGCKVLDLFCGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
S+ EA+SRG + ++++ + + ++ E+ G D + VE +Q
Sbjct: 57 SLSFEALSRGAASSLLIDINHYNL-RLVKQTSEYLGLTDNVVLMCCDVERLSIANDQ--- 112
Query: 228 KDGPFDYMSVTPPYT 242
+D + V PPY
Sbjct: 113 ----YDIVFVDPPYN 123
>gi|434380810|ref|YP_006702593.1| yhhF N6 adenine specific methylase [Brachyspira pilosicoli WesB]
gi|404429459|emb|CCG55505.1| yhhF N6 adenine specific methylase [Brachyspira pilosicoli WesB]
Length = 182
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 17/157 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ ++ G + KK+++PK D RP V+ A F+I+ + +LDL +G+G+
Sbjct: 1 MHIISGYKKNKKIITPK-RDFRPTQGKVREALFNIIDANDKT--------FLDLCAGSGA 51
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG EA+SRG F+E+D V + N + + I V + +++R
Sbjct: 52 VGFEALSRGAKFAAFIEIDREAVKTIF-TNAKNIFEENQYKIKRVSTDDYVKRT------ 104
Query: 229 DGPFDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGCL 264
+ FD + PPY + + YEV +L+ G L
Sbjct: 105 NDTFDIIFFDPPYHSKIYYEVFLNIFERKLLNDNGYL 141
>gi|418324618|ref|ZP_12935852.1| RNA methyltransferase, RsmD family [Staphylococcus pettenkoferi
VCU012]
gi|365225305|gb|EHM66550.1| RNA methyltransferase, RsmD family [Staphylococcus pettenkoferi
VCU012]
Length = 185
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 17/160 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + K L S +G RP M+ VK F+ LQ G LDL++G+G+
Sbjct: 1 MRVIAGIHKSKALESLEGRTTRPTMDKVKEGIFNSLQEISGV--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG ++ F++ + + V+ NL+ D + ++ RA + + K
Sbjct: 53 LGIEALSRGMDKMIFIDQN-FKAFKVIKHNLKSLELEDQAEVYKNNA----ARALKILAK 107
Query: 229 -DGPFDYMSVTPPYTA--VDYEVVEYPLRTDMLDTCGCLV 265
+ FD + + PPY +D E +E D+L G +V
Sbjct: 108 REMQFDVIFLDPPYEKGLID-EALEAIASFDLLKESGIIV 146
>gi|365992313|ref|NP_212340.2| putative methyltransferase [Borrelia burgdorferi B31]
gi|387825860|ref|YP_005805313.1| putative methyltransferase [Borrelia burgdorferi JD1]
gi|312148252|gb|ADQ30911.1| putative methyltransferase [Borrelia burgdorferi JD1]
gi|356609311|gb|AAC66597.2| putative methyltransferase [Borrelia burgdorferi B31]
Length = 165
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 17/122 (13%)
Query: 122 LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEV 181
+ PK VRP+M +V+ A F I+ + ++LD+++GTG + +EA+SRG S
Sbjct: 1 MFPKNGSVRPVMSLVREAFFSIIFK------DIVNSKFLDVFAGTGIMSVEALSRGASLA 54
Query: 182 HFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG-KDGPFDYMSVTPP 240
H VE + + L+ N + V + + F +RAE F+ KD +D++ + PP
Sbjct: 55 HLVECNRK-IKITLVENFSF-----VEEFY----KFFFQRAEDFLSKKDLFYDFIYLDPP 104
Query: 241 YT 242
+
Sbjct: 105 FN 106
>gi|198284461|ref|YP_002220782.1| methyltransferase [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218667593|ref|YP_002427128.1| methyltransferase [Acidithiobacillus ferrooxidans ATCC 23270]
gi|416002963|ref|ZP_11560870.1| methyltransferase, putative [Acidithiobacillus sp. GGI-221]
gi|198248982|gb|ACH84575.1| methyltransferase [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218519806|gb|ACK80392.1| methyltransferase, putative [Acidithiobacillus ferrooxidans ATCC
23270]
gi|339836159|gb|EGQ63771.1| methyltransferase, putative [Acidithiobacillus sp. GGI-221]
Length = 189
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 32/142 (22%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ ++ G+ R ++LL+P G +RP V+ F+ L+ + R LDL++G+G+
Sbjct: 3 ISIIAGRHRGRRLLTPAGRTLRPTPGAVRERLFNWLEG------QVAGARVLDLFAGSGA 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG EV FVE DP +L NL G A+Q G
Sbjct: 57 LGLEAWSRGAREVVFVERDP-GHRRLLARNLAACGVA----------------AQQLAGT 99
Query: 229 DG---------PFDYMSVTPPY 241
D PFD + PP+
Sbjct: 100 DALGYLQQCTRPFDILFADPPF 121
>gi|452991983|emb|CCQ96599.1| putative ribosomal RNA small subunit methyltransferase D
[Clostridium ultunense Esp]
Length = 186
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 32/192 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL--QSAGGCPASLRPGRWLDLYSGT 166
++V+ GK + +KL + G RP + VK A F+++ GG LDL++GT
Sbjct: 1 MRVISGKWKGRKLFAVPGRTTRPTADKVKEALFNMIGPYFTGGIG--------LDLFAGT 52
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G +GIEA+SRG F++ D V + NL+ G D + ++ + L Q
Sbjct: 53 GGLGIEALSRGFDRFIFIDRDIRAVETIR-ANLKQVGGWDEAEVYRSDADRAL---SQLK 108
Query: 227 GKDGPFDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLVKIKDR--------------- 270
+ F + + PPY + +E L ++L+ +V +DR
Sbjct: 109 KRGLRFHLVFMDPPYAEEKNVHFLERFLEENLLEPGAIVVVERDREREIHFRDPRLPLWK 168
Query: 271 --RFGRTHLAIY 280
RFG T L+IY
Sbjct: 169 ESRFGDTALSIY 180
>gi|301059171|ref|ZP_07200111.1| RNA methyltransferase, RsmD family [delta proteobacterium NaphS2]
gi|300446719|gb|EFK10544.1| RNA methyltransferase, RsmD family [delta proteobacterium NaphS2]
Length = 186
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 9/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG+ + + L +PK +D+RP V+ A F+I+ L R LDL+SGTG
Sbjct: 1 MKITGGQIKGRILAAPKNLDIRPSSNKVRAAIFNIIGQ------DLSGTRVLDLFSGTGL 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ ++ ++ NL G+ SI + L + F+
Sbjct: 55 LGIEALSRGAVLGVFVDYAKQSLA-LIRRNLLLCGYERKGSICKWDLAKGLPKNRAFIA- 112
Query: 229 DGPFDYMSVTPPY 241
+D + + PPY
Sbjct: 113 -AKYDLVFLDPPY 124
>gi|359767982|ref|ZP_09271762.1| hypothetical protein GOPIP_070_00740 [Gordonia polyisoprenivorans
NBRC 16320]
gi|359314559|dbj|GAB24595.1| hypothetical protein GOPIP_070_00740 [Gordonia polyisoprenivorans
NBRC 16320]
Length = 199
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 11/146 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G+ + L P RP + V+ A F+IL + L LDLY+G+G
Sbjct: 1 MTRIIAGRHGGRPLKVPD-AGTRPTSDRVREAVFNILDA----RIDLEGAAILDLYAGSG 55
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL---ERAE- 223
++G+EA+SRG S FV+ + + V+ NL G +V + T V FL RA+
Sbjct: 56 ALGLEALSRGASSAVFVD-NRRRATAVVTANLRALGVAEVGRVITAPVSAFLAGPARADV 114
Query: 224 -QFVGKDGPFDYMSVTPPYTAVDYEV 248
VG G FD + PPY D EV
Sbjct: 115 PARVGVTGRFDVIFSDPPYAFTDDEV 140
>gi|293364742|ref|ZP_06611459.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
gi|307702989|ref|ZP_07639936.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
gi|291316192|gb|EFE56628.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
gi|307623382|gb|EFO02372.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
Length = 179
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 13/134 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRK-AQAIIAENIQMTK--EVSKFQLLKMEA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYT 242
GPFD + + PPY
Sbjct: 108 KGPFDLVFLDPPYA 121
>gi|225628668|ref|ZP_03786702.1| methyltransferase [Brucella ceti str. Cudo]
gi|237816713|ref|ZP_04595705.1| methyltransferase [Brucella abortus str. 2308 A]
gi|260544387|ref|ZP_05820208.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260759651|ref|ZP_05871999.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
gi|261216839|ref|ZP_05931120.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261319067|ref|ZP_05958264.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261319706|ref|ZP_05958903.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|261753205|ref|ZP_05996914.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|261756374|ref|ZP_06000083.1| conserved hypothetical protein [Brucella sp. F5/99]
gi|294853221|ref|ZP_06793893.1| RsmD family RNA methyltransferase [Brucella sp. NVSL 07-0026]
gi|297249904|ref|ZP_06933605.1| RsmD family RNA methyltransferase [Brucella abortus bv. 5 str.
B3196]
gi|225616514|gb|EEH13562.1| methyltransferase [Brucella ceti str. Cudo]
gi|237787526|gb|EEP61742.1| methyltransferase [Brucella abortus str. 2308 A]
gi|260097658|gb|EEW81532.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260669969|gb|EEX56909.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
gi|260921928|gb|EEX88496.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261292396|gb|EEX95892.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|261298290|gb|EEY01787.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261736358|gb|EEY24354.1| conserved hypothetical protein [Brucella sp. F5/99]
gi|261742958|gb|EEY30884.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|294818876|gb|EFG35876.1| RsmD family RNA methyltransferase [Brucella sp. NVSL 07-0026]
gi|297173773|gb|EFH33137.1| RsmD family RNA methyltransferase [Brucella abortus bv. 5 str.
B3196]
Length = 196
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L++P +RP + + + F+IL A P + R LDL++GTG+
Sbjct: 10 VRIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNIL--AHSFPDKVEGVRVLDLFAGTGA 67
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER-AEQF-- 225
+G+EA+SRG FVE + +L N+E G + I L R A Q
Sbjct: 68 LGLEALSRGARYATFVE-ESAEGRGILRQNIEALGLQGHTKI--------LRRDACQLGI 118
Query: 226 VGKDGPFDYMSVTPPY 241
VG PFD + PPY
Sbjct: 119 VGTMEPFDLVFADPPY 134
>gi|338740648|ref|YP_004677610.1| methyltransferase with SAM-dependent methyltransferase domain
[Hyphomicrobium sp. MC1]
gi|337761211|emb|CCB67044.1| putative methyltransferase with SAM-dependent methyltransferase
domain [Hyphomicrobium sp. MC1]
Length = 188
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 72/133 (54%), Gaps = 7/133 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ R + L +P M +RP + V+ + F+IL + G SL R +DL++GTG+
Sbjct: 1 MRVVAGRFRGRALQAPDDMSIRPTSDRVRESVFNIL-THGIEGFSLNGARVIDLFAGTGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FVE P + ++ N+E G + I R T L A G
Sbjct: 60 LGIEAVSRGAAYCLFVEDAPDARA-LIRKNVEAMGLTGETRIFR-RDATDLGPA----GN 113
Query: 229 DGPFDYMSVTPPY 241
P++ + PPY
Sbjct: 114 MEPYELAFLDPPY 126
>gi|295396027|ref|ZP_06806211.1| possible rRNA (guanine-N(2)-)-methyltransferase [Brevibacterium
mcbrellneri ATCC 49030]
gi|294971115|gb|EFG47006.1| possible rRNA (guanine-N(2)-)-methyltransferase [Brevibacterium
mcbrellneri ATCC 49030]
Length = 181
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L +P+G D RP + V+ + F L G +L LDL++G+G+
Sbjct: 1 MRVIAGKYKSHALTAPQGADTRPTSDRVRESLFATLDMLGMIDGAL----VLDLFAGSGA 56
Query: 169 VGIEAISRGCSEVHFVE 185
+GIEA+SRG S+V FVE
Sbjct: 57 LGIEALSRGASDVVFVE 73
>gi|408356968|ref|YP_006845499.1| methyltransferase [Amphibacillus xylanus NBRC 15112]
gi|407727739|dbj|BAM47737.1| putative methyltransferase [Amphibacillus xylanus NBRC 15112]
Length = 189
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 95/198 (47%), Gaps = 24/198 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + + + + RP + VK + F+I+ G+ LDL++G+G
Sbjct: 1 MRVISGKLKGRSIETINDHSTRPTSDKVKESLFNII------GPYFSSGKVLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEAISRG FV+ VV V+ NL + + ++ + + F RA + +GK
Sbjct: 55 LGIEAISRGADHAIFVDQQRRVVQ-VIKKNLASLNITEQAEVY--QNDAF--RALKALGK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVV-EYPLRTDMLDTCGCLVKIKDRR---------FGRTHL 277
F+Y+ + PPY Y+++ E ++ +++ +V D++ F +T
Sbjct: 110 RKVKFNYIFIDPPYNKNVYQLLMEEIVKQNIISNDTIIVCEHDQKLNLADQIALFKKTRT 169
Query: 278 AIYGPDWAQK--KRKSEK 293
YG A KRK E+
Sbjct: 170 EKYGSSIAISFYKRKDEE 187
>gi|402818478|ref|ZP_10868061.1| putative rRNA methyltransferase YlbH [Paenibacillus alvei DSM 29]
gi|402503944|gb|EJW14476.1| putative rRNA methyltransferase YlbH [Paenibacillus alvei DSM 29]
Length = 196
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 10/160 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR + L GM RP + VK A F ++ G LDL++GTG
Sbjct: 1 MRVISGTARGRSLKPVPGMGTRPTTDKVKEALFSMIGP------YFDGGYVLDLFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FV+ DP V V+ N++ G + S ++ + L + +
Sbjct: 55 LGIEALSRGAGQGIFVDKDPKAVE-VVKHNVQTAGVANRSEVYRNDAKRAL---KALAKR 110
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIK 268
D F+ + + PPY D + + + D L + ++ ++
Sbjct: 111 DIAFELIFLDPPYRLKDADELLEGMWNDGLISESAIIVVE 150
>gi|406586571|ref|ZP_11061499.1| methyltransferase, putative [Streptococcus sp. GMD1S]
gi|404473922|gb|EKA18245.1| methyltransferase, putative [Streptococcus sp. GMD1S]
Length = 179
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 13/134 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRK-AQAIIAENIQMTK--EVSKFQLLKMEA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYT 242
GPFD + + PPY
Sbjct: 108 KGPFDLVFLDPPYA 121
>gi|282890158|ref|ZP_06298688.1| hypothetical protein pah_c014o002 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338174319|ref|YP_004651129.1| rRNA methyltransferase ylbH [Parachlamydia acanthamoebae UV-7]
gi|281499815|gb|EFB42104.1| hypothetical protein pah_c014o002 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336478677|emb|CCB85275.1| putative rRNA methyltransferase ylbH [Parachlamydia acanthamoebae
UV-7]
Length = 196
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 10/135 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + + +++PKG RP ++ A F+I C + +LDL++G+G+
Sbjct: 1 MRIISGLYKNRTIVAPKGDKTRPTSSQLRAALFNI------CQLYIEDAVFLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG +V FV+ + + + NLE D + FL+ + K
Sbjct: 55 IGLEALSRGAKKVVFVDNQRYCI-QCIQKNLENFREEDHGQVFFNDAFDFLQESAVCHEK 113
Query: 229 DGPFDYMSVTPPYTA 243
FD + PPY +
Sbjct: 114 ---FDIIYADPPYNS 125
>gi|375008061|ref|YP_004981694.1| methyltransferase [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359286910|gb|AEV18594.1| Methyltransferase [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 201
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 30/193 (15%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ ++V+ G + ++L + GM RP + VK A F+++ G LDL++G+
Sbjct: 2 KAMRVISGTCKGRRLQAVPGMSTRPTTDKVKEAIFNMIGP------YFSGGNGLDLFAGS 55
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G +GIEA+SRG V FV+ D V V N+ G + I+ ERA + V
Sbjct: 56 GGLGIEALSRGIERVIFVDQDRKAVQTVR-KNVAACGLEKRAEIYC----NDAERALKAV 110
Query: 227 GKDG-PFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKI 267
K G F + + PPY + V E+ ++ + G L +
Sbjct: 111 AKRGLRFAVIFLDPPYKEKQWPTLLSSIAGRQLLEPHGVVVAEHSAEAELPEEVGGLTRW 170
Query: 268 KDRRFGRTHLAIY 280
K +G T + IY
Sbjct: 171 KRETYGITGVTIY 183
>gi|350567024|ref|ZP_08935634.1| site-specific DNA-methyltransferase (adenine-specific)
[Peptoniphilus indolicus ATCC 29427]
gi|348659878|gb|EGY76597.1| site-specific DNA-methyltransferase (adenine-specific)
[Peptoniphilus indolicus ATCC 29427]
Length = 183
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 71/159 (44%), Gaps = 17/159 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G R KL +P G RP + VK F+IL + +DL+SGTG
Sbjct: 6 MRVISGSKRGLKLQTPIGYGTRPTEDRVKENIFNILGQM------FYDAKVMDLFSGTGQ 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG V FVE V VL NL F + + L G
Sbjct: 60 IGIEFLSRGAKSVIFVEK-DKKVLKVLKENLNKASF----KAEILEKDALL----ALNGV 110
Query: 229 DGPFDYMSVTPPYTAVDY--EVVEYPLRTDMLDTCGCLV 265
FDY+ + PPY + EV E + D+L+ G LV
Sbjct: 111 GNKFDYIYMDPPYDDSELYDEVAESIYKLDLLEEDGILV 149
>gi|422933306|ref|ZP_16966228.1| N6-adenine-specific methyltransferase [Fusobacterium nucleatum
subsp. animalis ATCC 51191]
gi|339891252|gb|EGQ80259.1| N6-adenine-specific methyltransferase [Fusobacterium nucleatum
subsp. animalis ATCC 51191]
Length = 125
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 7/98 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------APYIEGSVFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
+ +EAISRG +E D + +I N++ GF D
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEAL-KYIIENIDNLGFSD 91
>gi|78356825|ref|YP_388274.1| methyltransferase [Desulfovibrio alaskensis G20]
gi|78219230|gb|ABB38579.1| methyltransferase [Desulfovibrio alaskensis G20]
Length = 189
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ + L + G RP M V+ A F +L++ G R LDL++G+GS
Sbjct: 1 MKIISGEYGGRTLKTTVGPGYRPAMAKVRKALFSMLEARG---VHWSECRVLDLFAGSGS 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
G EA+SRG +E FVE +P V V+ N E + + R + F E +F V
Sbjct: 58 CGFEALSRGAAEGWFVESNPAAV-KVIRSNAE------LLKVEAARWQVFHEDVSKFLRV 110
Query: 227 GKDGPFDYMSVTPPY 241
FD + + PPY
Sbjct: 111 APARAFDVVFIDPPY 125
>gi|270292102|ref|ZP_06198317.1| putative type II DNA modification methyltransferase [Streptococcus
sp. M143]
gi|417934125|ref|ZP_12577445.1| RNA methyltransferase, RsmD family [Streptococcus mitis bv. 2 str.
F0392]
gi|270279630|gb|EFA25472.1| putative type II DNA modification methyltransferase [Streptococcus
sp. M143]
gi|340770695|gb|EGR93210.1| RNA methyltransferase, RsmD family [Streptococcus mitis bv. 2 str.
F0392]
Length = 179
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 13/134 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRK-AQAIIAENIQMTK--EVSKFQLLKMEA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYT 242
GPFD + + PPY
Sbjct: 108 TGPFDLVFLDPPYA 121
>gi|227872674|ref|ZP_03991004.1| N6-adenine-specific methyltransferase [Oribacterium sinus F0268]
gi|227841488|gb|EEJ51788.1| N6-adenine-specific methyltransferase [Oribacterium sinus F0268]
Length = 194
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L P+G D RP + +K F+ILQ L LDL++G+G+
Sbjct: 8 MRVIAGSARRLLLSVPEGKDTRPTTDRIKETLFNILQF------DLVDQDVLDLFAGSGA 61
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F + ++ + N+ F + + ++ + L E GK
Sbjct: 62 LGIEALSRGAKRAVFCDSGKKALA-CIEQNIARCHFQEQALVYGGDFHSALRSLE---GK 117
Query: 229 DGPFDYMSVTPPY 241
D F + + PPY
Sbjct: 118 DYHFGIVFLDPPY 130
>gi|417939638|ref|ZP_12582927.1| RNA methyltransferase, RsmD family [Streptococcus oralis SK313]
gi|343389833|gb|EGV02417.1| RNA methyltransferase, RsmD family [Streptococcus oralis SK313]
Length = 179
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 13/134 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRR-AQAIVAANIQMTK--EVSKFQLLKMEA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYT 242
GPFD + + PPY
Sbjct: 108 TGPFDLVFLDPPYA 121
>gi|315221974|ref|ZP_07863885.1| RNA methyltransferase, RsmD family [Streptococcus anginosus F0211]
gi|315188940|gb|EFU22644.1| RNA methyltransferase, RsmD family [Streptococcus anginosus F0211]
Length = 214
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 25/163 (15%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++V+ GK + L + +G RP + VKGA F+++ GR LDLY+G+G
Sbjct: 35 FMRVVAGKYGGRPLKTLEGKTTRPTTDKVKGAIFNMI------GPYFDGGRVLDLYAGSG 88
Query: 168 SVGIEAISRGCSEVHFVEMD---PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
S+ IEAISRG + VE D ++S +I E F +++E+ RA +
Sbjct: 89 SLAIEAISRGMASAVLVEKDRRAQTIISQNIIMTKEKERF------ELLKMES--NRALE 140
Query: 225 FVGKDGPFDYMSVTPPYT----AVDYE-VVEYPLRT-DMLDTC 261
V G FD + + PPY A D E +VE L + D+L C
Sbjct: 141 LV--TGQFDLVLLDPPYAKEQIAADIEKLVERELLSDDVLVVC 181
>gi|444311918|ref|ZP_21147518.1| putative methyltransferase [Ochrobactrum intermedium M86]
gi|443484848|gb|ELT47650.1| putative methyltransferase [Ochrobactrum intermedium M86]
Length = 187
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L++P +RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGKLRGRALVTPSTNAIRPTTDRTRESLFNIL--AHNFPDKVEGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER-AEQF-- 225
+G+EA+SRG FVE + +L N+E G + I L R A Q
Sbjct: 59 LGLEALSRGARYATFVE-ESAEGRGLLRQNIEAFGLQGHTKI--------LRRDACQLGI 109
Query: 226 VGKDGPFDYMSVTPPY 241
VG PF+ + PPY
Sbjct: 110 VGTMEPFNLVFADPPY 125
>gi|397906406|ref|ZP_10507213.1| Ribosomal RNA small subunit methyltransferase D [Caloramator
australicus RC3]
gi|397160549|emb|CCJ34550.1| Ribosomal RNA small subunit methyltransferase D [Caloramator
australicus RC3]
Length = 187
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 74/136 (54%), Gaps = 16/136 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + +P+GM+ RP ++ VK + F+I+ + + LD+++G+G+
Sbjct: 1 MRIITGEAKGRIIKAPEGMNTRPTLDRVKESVFNIISN------KIYDAIVLDMFAGSGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH---TVRVETFLERAEQF 225
+G+EAISRG F+E D VL N++ F D S + + ++ L + E F
Sbjct: 55 LGLEAISRGAKFCTFIEKDKSAYK-VLKENIKNLNFEDRSKAYFGDSFKIIKNLSK-ENF 112
Query: 226 VGKDGPFDYMSVTPPY 241
+D + + PPY
Sbjct: 113 -----KYDLIFLDPPY 123
>gi|92118636|ref|YP_578365.1| hypothetical protein Nham_3170 [Nitrobacter hamburgensis X14]
gi|91801530|gb|ABE63905.1| conserved hypothetical protein 95 [Nitrobacter hamburgensis X14]
Length = 184
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 8/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + L SP +RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNLASPSTQQIRPTADRLRESLFNILVHAYDDPVA--DARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FV+ + +L N+E G V+ ++ R T L A
Sbjct: 59 LGIEAVSRGATFTLFVD-NGAEARALLRNNVEALGLGGVTKVYR-RDATDLGPAHPVE-- 114
Query: 229 DGPFDYMSVTPPY 241
PF + + PPY
Sbjct: 115 --PFSLVFLDPPY 125
>gi|152976345|ref|YP_001375862.1| putative methyltransferase [Bacillus cytotoxicus NVH 391-98]
gi|152025097|gb|ABS22867.1| putative methyltransferase [Bacillus cytotoxicus NVH 391-98]
Length = 188
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 36/194 (18%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+I+ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGSTTRPTTDKVKESIFNII------GPYFDGGSALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ---- 224
+GIEA+SRG +V FV+ D V ++ NLE +H + E + AE+
Sbjct: 55 LGIEALSRGMDKVIFVDRDHKAV-KIIRQNLESC------RVHN-QAEVYRNDAERAVKA 106
Query: 225 FVGKDGPFDYMSVTPPY---------TAVDYE---------VVEYPLRTDMLDTCGCLVK 266
+ ++ FD + + PPY + +D + E+ + +T G LVK
Sbjct: 107 LIKREISFDLILLDPPYKDQKIVSLISIIDQHGLLNEDGLIMAEHGNEVILPETIGKLVK 166
Query: 267 IKDRRFGRTHLAIY 280
++ ++G T ++IY
Sbjct: 167 VRAEKYGITAISIY 180
>gi|443623861|ref|ZP_21108349.1| putative DNA methylase [Streptomyces viridochromogenes Tue57]
gi|443342642|gb|ELS56796.1| putative DNA methylase [Streptomyces viridochromogenes Tue57]
Length = 195
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 14/146 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGAAGGRRLAVPPGTGTRPTSDRAREGLFSTWQSLLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG VE D + ++ N V ++ E +AEQ V
Sbjct: 59 AVGLEALSRGAGHTLLVEADA-RAARIVREN--------VRNLGLPGAEVRAGKAEQIVR 109
Query: 228 K---DGPFDYMSVTPPYTAVDYEVVE 250
P+D + + PPY D+++ E
Sbjct: 110 TPPPSEPYDIVFLDPPYRVSDHDLRE 135
>gi|421489456|ref|ZP_15936836.1| RNA methyltransferase, RsmD family [Streptococcus oralis SK304]
gi|400365693|gb|EJP18743.1| RNA methyltransferase, RsmD family [Streptococcus oralis SK304]
Length = 179
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 13/134 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRR-AQAIVAANIQMTK--EVSKFQLLKMEA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYT 242
GPFD + + PPY
Sbjct: 108 TGPFDLVFLDPPYA 121
>gi|330466260|ref|YP_004404003.1| putative methyltransferase [Verrucosispora maris AB-18-032]
gi|328809231|gb|AEB43403.1| putative methyltransferase [Verrucosispora maris AB-18-032]
Length = 187
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 31/191 (16%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G +++ P G RP + V+ A F +Q L R+ DLY+G+G
Sbjct: 1 MTRIVAGSLGGRRIAVPPGSGTRPTADRVREALFSSVQ----AELDLVGARFADLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG V VE D + V+ N+ + + T +V T L G
Sbjct: 57 AVGLEALSRGAGHVLLVESDA-RAARVIRENMAILRAAPAARLVTGKVSTVLA-----AG 110
Query: 228 KDG-PFDYMSVTPPYTAVD--------------------YEVVEYPLRTDMLDTCGCLVK 266
DG P+D + PPY+ D VVE R+ +D +
Sbjct: 111 PDGEPYDVVFADPPYSLSDDGVRAMLTALVDGDWLAQDAMVVVERSTRSGPVDWVEGITG 170
Query: 267 IKDRRFGRTHL 277
+ RR+G T L
Sbjct: 171 QRSRRYGETTL 181
>gi|395242934|ref|ZP_10419922.1| 16S rRNA (Guanine-N(2)-)-methyltransferase [Lactobacillus hominis
CRBIP 24.179]
gi|394484754|emb|CCI80930.1| 16S rRNA (Guanine-N(2)-)-methyltransferase [Lactobacillus hominis
CRBIP 24.179]
Length = 182
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 31/191 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK ++ L + K RP + VK + F+ L Q G G LDLY+G+G
Sbjct: 1 MRIISGKYAKRNLYTLKSNSTRPTSDKVKESVFNSLGQFFSG-------GNVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG + V+++ N++ N+ T D + +R F + + F
Sbjct: 54 ALGIEAVSRGYDHAYLVDINSQ-ACNIIKKNVALTKEKD--RFNVIRNSDF-KALKIFET 109
Query: 228 KDGPFDYMSVTPPY----------TAVDYE--------VVEYPLRTDMLDTCGCLVKIKD 269
+ FD + + PPY T + Y+ V E T++ + G ++ KD
Sbjct: 110 QTIKFDLVFLDPPYAKEKIVKVMNTLLKYDLLNDHALVVAETDQHTELPEVDGFILN-KD 168
Query: 270 RRFGRTHLAIY 280
GRT + +Y
Sbjct: 169 HHLGRTKVKVY 179
>gi|161507338|ref|YP_001577292.1| hypothetical protein lhv_0885 [Lactobacillus helveticus DPC 4571]
gi|160348327|gb|ABX27001.1| hypothetical protein lhv_0885 [Lactobacillus helveticus DPC 4571]
Length = 182
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 29/193 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L + K RP + VK + F+ L G LDLY+G+G+
Sbjct: 1 MRIISGKYAKRNLFTLKSNKTRPTSDKVKESLFNSLGQF------FNGGNVLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG V+++ S ++ N+ T ++ S++ +R L F
Sbjct: 55 LGIEAVSRGYDHASLVDINHAACS-IIKKNVALTKEENLFSVYNMRSNAAL---RLFAEN 110
Query: 229 DGPFDYMSVTPPYT----AVDYE--------------VVEYPLRTDMLDTCGCLVKIKDR 270
FD + + PPY A D V E T++ D G + IK+
Sbjct: 111 QEKFDLVFLDPPYAKEKIAKDMLQMNKLGLLNSSATIVAETDDHTELGDISGFSL-IKEH 169
Query: 271 RFGRTHLAIYGPD 283
G+T + IY D
Sbjct: 170 HLGKTIVRIYRKD 182
>gi|448237266|ref|YP_007401324.1| rRNA methyltransferase [Geobacillus sp. GHH01]
gi|445206108|gb|AGE21573.1| rRNA methyltransferase [Geobacillus sp. GHH01]
Length = 204
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 30/193 (15%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ ++V+ G + ++L + GM RP + VK A F+++ G LDL++G+
Sbjct: 5 KAMRVISGTCKGRRLQAVPGMSTRPTTDKVKEAIFNMIGP------YFSGGNGLDLFAGS 58
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G +GIEA+SRG V FV+ D V V N+ G + I+ ERA + V
Sbjct: 59 GGLGIEALSRGIERVIFVDQDRKAVQTVR-KNVAACGLEKRAEIYC----NDAERALKAV 113
Query: 227 GKDG-PFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKI 267
K G F + + PPY + V E+ ++ + G L +
Sbjct: 114 AKRGLRFAVIFLDPPYKEKQWPTLLSSIAGRQLLEPHGVVVAEHSAEAELPEEVGGLTRW 173
Query: 268 KDRRFGRTHLAIY 280
K +G T + IY
Sbjct: 174 KRETYGITGVTIY 186
>gi|384215498|ref|YP_005606664.1| hypothetical protein BJ6T_17950 [Bradyrhizobium japonicum USDA 6]
gi|354954397|dbj|BAL07076.1| hypothetical protein BJ6T_17950 [Bradyrhizobium japonicum USDA 6]
Length = 184
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 80/161 (49%), Gaps = 8/161 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + L SP D+RP + ++ + F+IL A P ++ R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNLASPSSRDIRPTADRLRESVFNILVHAYDDP--IQDARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA SRG FV+ + +L N+E G + ++ R T L A
Sbjct: 59 LGIEASSRGAKFTLFVD-NGAEARALLRNNVETLGLGGTTKVYR-RDATDLGPAHPVE-- 114
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKD 269
PF + + PPY E LR T G L+ +++
Sbjct: 115 --PFSLVFLDPPYGKGFAEKSLASLRDGGWLTPGALLVVEE 153
>gi|119475397|ref|ZP_01615750.1| hypothetical protein GP2143_16296 [marine gamma proteobacterium
HTCC2143]
gi|119451600|gb|EAW32833.1| hypothetical protein GP2143_16296 [marine gamma proteobacterium
HTCC2143]
Length = 206
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 7/99 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GGK R +KL P +RP + V+ F+ L A + R LDL++G+G+
Sbjct: 17 LRIIGGKWRGRKLAFPSIEGLRPTPDRVRETLFNWL------AADVSAARCLDLFAGSGA 70
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV 207
+G+EA+SRG S+V FV+ P + LI NL G +V
Sbjct: 71 LGLEALSRGASQVDFVDRSPEPIKQ-LIENLRLLGAENV 108
>gi|56419633|ref|YP_146951.1| hypothetical protein GK1098 [Geobacillus kaustophilus HTA426]
gi|56379475|dbj|BAD75383.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 198
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 83/191 (43%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + ++L + GM RP + VK A F+++ G LDL++G+G
Sbjct: 1 MRVISGTCKGRRLQAVPGMSTRPTTDKVKEAIFNMIGP------YFSGGNGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG V FV+ D V V N+ G + I+ ERA + V K
Sbjct: 55 LGIEALSRGIERVIFVDQDRKAVQTVR-KNVAACGLEKRAEIYC----NDAERALKAVAK 109
Query: 229 DG-PFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKD 269
G F + + PPY + V E+ ++ + G L + K
Sbjct: 110 RGLRFAVIFLDPPYKEKQWPTLLSSIAGRQLLEPHGVVVAEHSAEAELPEEVGGLTRWKR 169
Query: 270 RRFGRTHLAIY 280
+G T + IY
Sbjct: 170 ETYGITGVTIY 180
>gi|420263405|ref|ZP_14766043.1| rna family [Enterococcus sp. C1]
gi|394769693|gb|EJF49538.1| rna family [Enterococcus sp. C1]
Length = 184
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ ++L S G + RP + VKGA F++L L G LDL+SG+G
Sbjct: 1 MRVVAGEYGGRRLKSLAGDNTRPTTDKVKGAIFNMLGQ------YLDGGVVLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMD-PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ IEA+SRG + H V +D + + V+ N+ T + ++ + L QF
Sbjct: 55 LAIEAVSRGAN--HAVCVDRSFPATKVIRENIAITKEPEKFTVLKMDANQAL---RQFAA 109
Query: 228 KDGPFDYMSVTPPYTAVD------------------YEVVEYPLRTDMLDTCGCLVKIKD 269
+ FDY+ + PPY + Y V E D+ + G L ++
Sbjct: 110 EGQSFDYLFLDPPYAKQEILHQLEAMLKDELIRPSAYVVCETDKSIDLPEQIGSLHSVRA 169
Query: 270 RRFGRTHLAIY 280
+ +G + + IY
Sbjct: 170 QTYGISAVTIY 180
>gi|334135210|ref|ZP_08508705.1| RNA methyltransferase, RsmD family [Paenibacillus sp. HGF7]
gi|333607262|gb|EGL18581.1| RNA methyltransferase, RsmD family [Paenibacillus sp. HGF7]
Length = 236
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR + L + GM RP + VK A F ++ G LDL++GTG
Sbjct: 49 MRVISGSARGRSLKAVPGMSTRPTTDKVKEAIFSMI------GPYFDGGTGLDLFAGTGG 102
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F++++ + V NLE TG D + I+ L+ E+ +
Sbjct: 103 LGIEALSRGLDTCIFIDLEKKSLDTVR-HNLEVTGLTDRAEIYRNDAGRALKALEK---R 158
Query: 229 DGPFDYMSVTPPY 241
F + + PPY
Sbjct: 159 GKQFGLVFLDPPY 171
>gi|296453498|ref|YP_003660641.1| putative methyltransferase [Bifidobacterium longum subsp. longum
JDM301]
gi|296182929|gb|ADG99810.1| putative methyltransferase [Bifidobacterium longum subsp. longum
JDM301]
Length = 203
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 69/149 (46%), Gaps = 23/149 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L +PK RP + K A F L S G L R LDL++GTG+
Sbjct: 1 MRVISGRFKGVALATPK-TGTRPTTDRTKEAIFSHLDSWG----VLDDARVLDLFAGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV------LIPNLEWTGFLDVSSIHTVRVETFLERA 222
+GIEA+SRG E+ VE + + L N W L + F ++A
Sbjct: 56 LGIEALSRGARELVAVESSRPAAALITKTLSQLQKNRSWDASL--------KARVFTKKA 107
Query: 223 EQFVGKDG-PFDYMSVTPPYTAVDYEVVE 250
EQ G G FD + + PPY YE E
Sbjct: 108 EQVAGGFGESFDVIFIDPPYA---YETAE 133
>gi|261419295|ref|YP_003252977.1| methyltransferase [Geobacillus sp. Y412MC61]
gi|261375752|gb|ACX78495.1| methyltransferase [Geobacillus sp. Y412MC61]
Length = 198
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 83/191 (43%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + ++L + GM RP + VK A F+++ G LDL++G+G
Sbjct: 1 MRVISGTCKGRRLQAVPGMSTRPTTDKVKEAIFNMIGP------YFSGGNGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG V FV+ D V V N+ G + I+ ERA + V K
Sbjct: 55 LGIEALSRGIERVIFVDHDRKAVQTVR-KNVAACGLEKRAEIYC----NDAERALKAVAK 109
Query: 229 DG-PFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKD 269
G F + + PPY + V E+ ++ + G L + K
Sbjct: 110 RGLRFAVIFLDPPYKEKQWPTLLSSIAERQLLEPRGVVVAEHSAEAELPEEVGGLTRWKR 169
Query: 270 RRFGRTHLAIY 280
+G T + IY
Sbjct: 170 ETYGITGVTIY 180
>gi|302389604|ref|YP_003825425.1| methyltransferase [Thermosediminibacter oceani DSM 16646]
gi|302200232|gb|ADL07802.1| methyltransferase [Thermosediminibacter oceani DSM 16646]
Length = 184
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 71/135 (52%), Gaps = 14/135 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL--QSAGGCPASLRPGRWLDLYSGT 166
++V GG R +++ S G+ RP ++V+ + F+IL ++AG +LD+++GT
Sbjct: 1 MRVTGGIFRGRRIKSLPGIKTRPTSDIVRESLFNILGEKTAGSS--------FLDVFAGT 52
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
GSVGIEA+SRG V F+E + + ++ NL L +S + +L+
Sbjct: 53 GSVGIEALSRGAERVVFIE-EGGLACRIIRENLIK---LRISDKSLIIKADYLKGMRSLE 108
Query: 227 GKDGPFDYMSVTPPY 241
+ FD + + PPY
Sbjct: 109 KTNTTFDIIFLDPPY 123
>gi|254784499|ref|YP_003071927.1| 16S rRNA m2G966 methyltransferase [Teredinibacter turnerae T7901]
gi|237685959|gb|ACR13223.1| 16S rRNA m2G966 methyltransferase [Teredinibacter turnerae T7901]
Length = 191
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 22/201 (10%)
Query: 98 KSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG 157
+ Q + + L+++GG+ R +KL +RP + V+ F+ L A PG
Sbjct: 2 QRQSKNSQKSSLRIIGGQWRGRKLSIADAEGLRPTGDRVRETLFNWL-------APWLPG 54
Query: 158 -RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216
R LDL++GTG++G+EA+SRG + F+E +P + + E LD +R +
Sbjct: 55 ARCLDLFAGTGALGLEALSRGAAHTTFIETNPHAAATL----CEHLNTLDCKQADVLRND 110
Query: 217 --TFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKDRRFGR 274
+L A P+D + V PP+ +E + + + LV I+
Sbjct: 111 GIAWLNSAAH-----TPYDIIFVDPPFAKDLWEQALTSIERCAVASAQALVYIETP---V 162
Query: 275 THLAIYGPDWAQKKRKSEKKI 295
H P+W K K+ K+
Sbjct: 163 DHALNTPPNWQPLKSKTAGKV 183
>gi|223937012|ref|ZP_03628920.1| Protein of unknown function methylase putative [bacterium Ellin514]
gi|223894293|gb|EEF60746.1| Protein of unknown function methylase putative [bacterium Ellin514]
Length = 198
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 9/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GGKA + L PKG+DVRP ++VK A F+ L + + R L+L++GTG+
Sbjct: 1 MRITGGKATGRPLRVPKGLDVRPTPDLVKQAVFNSLGN------RVVGARVLELFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +E +SRG ++V VEM + + N G + VRV+ Q
Sbjct: 55 LSLECLSRGAAQVVCVEMAQR-HAQAIRHNAGKVGI--GPEVLEVRVQDVFNALPQLAAA 111
Query: 229 DGPFDYMSVTPPY 241
F+ + PPY
Sbjct: 112 GRQFEVVIADPPY 124
>gi|350563481|ref|ZP_08932302.1| methyltransferase [Thioalkalimicrobium aerophilum AL3]
gi|349778616|gb|EGZ32967.1| methyltransferase [Thioalkalimicrobium aerophilum AL3]
Length = 206
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 69/136 (50%), Gaps = 12/136 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQ---SAGGCPASLRPGRWLDLYSG 165
++++GG+AR +KL + +RP + V+ F+ LQ + C LD ++G
Sbjct: 15 VRIIGGEARGRKLTVLERPGLRPTSDRVRETLFNWLQFDIAGKQC---------LDAFAG 65
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+G++G EA+SRG + V F+E P VV+ + ++W ++ V L+ +Q
Sbjct: 66 SGALGFEALSRGAASVTFLEQSPNVVACLQANLVQWQHAGLATARSRVITTDTLQWLQQP 125
Query: 226 VGKDGPFDYMSVTPPY 241
D FD + V PP+
Sbjct: 126 CSADQAFDIIFVDPPF 141
>gi|456388607|gb|EMF54047.1| hypothetical protein SBD_3715 [Streptomyces bottropensis ATCC
25435]
Length = 195
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 71/160 (44%), Gaps = 17/160 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F +S G P L R LDLY+G+G
Sbjct: 1 MTRVIAGTAGGRRLAVPPGTGTRPTSDRAREGLFSTWESLLGGP--LHGARVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV- 226
+VG+EA+SRG VE D + +V S+ E +AEQ V
Sbjct: 59 AVGLEALSRGAGHTLLVEADARAARTIRD---------NVRSLGLPGAEVRSGKAEQIVQ 109
Query: 227 --GKDGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCL 264
D P+ + + PPY D ++ E L L T G L
Sbjct: 110 GPAPDEPYGLVFLDPPYAVPDDDLREILL---TLRTGGWL 146
>gi|306824478|ref|ZP_07457824.1| probable methyltransferase [Streptococcus sp. oral taxon 071 str.
73H25AP]
gi|304433265|gb|EFM36235.1| probable methyltransferase [Streptococcus sp. oral taxon 071 str.
73H25AP]
Length = 179
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 13/134 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFDGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRK-AQAIIAENIQMTK--EVSKFQLLKMEA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYT 242
GPFD + + PPY
Sbjct: 108 KGPFDLVFLDPPYA 121
>gi|342218580|ref|ZP_08711190.1| RNA methyltransferase, RsmD family [Megasphaera sp. UPII 135-E]
gi|341589450|gb|EGS32725.1| RNA methyltransferase, RsmD family [Megasphaera sp. UPII 135-E]
Length = 195
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 13/134 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR + L SP G RP ++ + + F+IL + SL LD+++GTG+
Sbjct: 12 VRIISGKARGRILKSPAGRLTRPTLDRTRESLFNILTAT-----SLHDTHVLDIFAGTGA 66
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + F++ +++ N + GFL+ I V L +Q G+
Sbjct: 67 LGLEALSRGAKQGVFIDHH---TVDLIRENGKRCGFLEQMEILPYDVHRAL---KQLQGR 120
Query: 229 DGPFDYMSVTPPYT 242
F ++ PPY
Sbjct: 121 Q--FHFIFADPPYN 132
>gi|302871972|ref|YP_003840608.1| methyltransferase [Caldicellulosiruptor obsidiansis OB47]
gi|302574831|gb|ADL42622.1| methyltransferase [Caldicellulosiruptor obsidiansis OB47]
Length = 184
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 29/189 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + +KL S +RP + VK A F+++ P D ++GTG+
Sbjct: 1 MRVISGQQKGRKLKSANIEGLRPTSDRVKEAIFNMI-----APFLNEKLIVADFFAGTGN 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIE +SRG EV FVE D + N++ NL+ L + I V FL+ K
Sbjct: 56 VGIEFLSRGAKEVVFVEKDVRCI-NLIKENLKNLNLLKRARIIKADVIRFLK------SK 108
Query: 229 DGP-FDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGCLVK---------------IKDRR 271
+ P FD + + PPY + E + + + ++ G ++ +++R
Sbjct: 109 NCPVFDIIFLDPPYKSGYAKECISEIIENNRINENGLIIVESNVEFRYEDENLSILRERE 168
Query: 272 FGRTHLAIY 280
+G T + I+
Sbjct: 169 YGDTKITIF 177
>gi|225378032|ref|ZP_03755253.1| hypothetical protein ROSEINA2194_03692 [Roseburia inulinivorans DSM
16841]
gi|225210033|gb|EEG92387.1| hypothetical protein ROSEINA2194_03692 [Roseburia inulinivorans DSM
16841]
Length = 168
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 70/134 (52%), Gaps = 13/134 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRPGRWLDLYSGTG 167
++++ G AR L + +GMD RP + +K F++LQ+ GC +LDL++G+G
Sbjct: 1 MRIIAGTARSLPLKTIEGMDTRPTTDRIKETLFNMLQNDVPGC-------YFLDLFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+G+EA+SRG FVE + + + N+ +T F + + V + + E G
Sbjct: 54 QIGLEAVSRGARYAVFVENNKKACA-CIEDNIHFTKFDRETKLLQSDVISAIRSME---G 109
Query: 228 KDGPFDYMSVTPPY 241
K FD + + PPY
Sbjct: 110 K-YRFDVIFMDPPY 122
>gi|381209788|ref|ZP_09916859.1| hypothetical protein LGrbi_07681 [Lentibacillus sp. Grbi]
Length = 184
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 13/158 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + ++L + G RP + VK A F I+ G LDL++G+G+
Sbjct: 1 MRVIAGFHKGRQLEAVPGRTTRPTSDKVKEAVFQIM------GPFFEQGACLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FV+ P + + N+ D S + R ++F RA + K
Sbjct: 55 LGIEALSRGMEKGIFVDKHPKAIHTIH-ENIRTLKLEDSSEV--FRADSF--RALNAISK 109
Query: 229 -DGPFDYMSVTPPYTAVDY-EVVEYPLRTDMLDTCGCL 264
+ FD + + PPY DY E++E +L G +
Sbjct: 110 RELQFDLILLDPPYKKADYGELLETIEELQLLKETGMI 147
>gi|443474823|ref|ZP_21064791.1| methyltransferase [Pseudanabaena biceps PCC 7429]
gi|443020412|gb|ELS34374.1| methyltransferase [Pseudanabaena biceps PCC 7429]
Length = 181
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 35/182 (19%)
Query: 119 KKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC 178
+ + +P G+ RP V+ A F+ILQS ++ WLD+ +G+G++G EA++RG
Sbjct: 9 RSIKTPTGLSTRPTPSKVRAAVFNILQS------RIKNANWLDICAGSGAMGAEALTRGA 62
Query: 179 SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV----RVETFLERAEQFVGKDGPFDY 234
S+V +E+ + ++ N W F V ++ + QF FD
Sbjct: 63 SKVVGIELSA-IACRIVHEN--WHKFAQPEQQFQVIKGDAIKILPKLQPQF------FDL 113
Query: 235 MSVTPPYTAVDYEVVEYPL------------RTDML----DTCGCLVKIKDRRFGRTHLA 278
+ PPY + YE V L D L D G L+ R++G+T LA
Sbjct: 114 VYFDPPYQSDLYEPVLKALPPLLAESALAIAECDRLRPLPDEIGNLICYDRRQYGQTALA 173
Query: 279 IY 280
Y
Sbjct: 174 FY 175
>gi|365959217|ref|YP_004940784.1| hypothetical protein FCOL_00700 [Flavobacterium columnare ATCC
49512]
gi|365735898|gb|AEW84991.1| hypothetical protein FCOL_00700 [Flavobacterium columnare ATCC
49512]
Length = 201
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 83/160 (51%), Gaps = 16/160 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + ++L++PK + VRP ++ K + F+IL + + R LDL+SGTG+
Sbjct: 1 MRIISGKYKGRRLVAPKNLPVRPTTDMAKESLFNILNNY----FNFNGLRVLDLFSGTGN 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ E +SRG V V+ D ++ + E+ ++++ I + V FLE+ +
Sbjct: 57 ISYEFLSRGAESVISVDGDFGCINYIKKTAKEFE--MNITPIKS-DVFKFLEKNKN---- 109
Query: 229 DGPFDYMSVTPPY--TAVDYE-VVEYPLRTDMLDTCGCLV 265
+D + PPY ++E ++ ++LD G L+
Sbjct: 110 --NYDIIFADPPYDLDQKNFEKILALIFENNLLDPDGMLI 147
>gi|307941690|ref|ZP_07657045.1| RNA methyltransferase, RsmD family [Roseibium sp. TrichSKD4]
gi|307775298|gb|EFO34504.1| RNA methyltransferase, RsmD family [Roseibium sp. TrichSKD4]
Length = 185
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 14/136 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + +++PK RP + ++ F+IL A G L R LDL++G+G+
Sbjct: 1 MRIVAGKFKGAAIVAPKSQSTRPTSDRLRETIFNIL--AHGLDVDLNGSRVLDLFAGSGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EAISRG F+E + + N+E G + I R +G
Sbjct: 59 LGFEAISRGARHCTFIE-EGAEARGAIRRNMEALGLNGAAKI--------FRRDAARLGG 109
Query: 229 DG---PFDYMSVTPPY 241
G PFD + V PPY
Sbjct: 110 AGTVEPFDIVFVDPPY 125
>gi|337750102|ref|YP_004644264.1| RsmD family RNA methyltransferase [Paenibacillus mucilaginosus
KNP414]
gi|336301291|gb|AEI44394.1| RsmD family RNA methyltransferase [Paenibacillus mucilaginosus
KNP414]
Length = 194
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ + L S GM RP + VK A F ++ GR LDL++GTG
Sbjct: 1 MRVISGSAKGRPLKSVPGMGTRPTTDKVKEAVFSMIGP------YFDGGRVLDLFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH---TVRVETFLERAEQF 225
+ IEA+SRG + D V + NL+ GF D + ++ +R L R
Sbjct: 55 LSIEALSRGMEAAVLTDTDKKAVETIH-QNLKAAGFTDRAEVYRNDALRALRALSR---- 109
Query: 226 VGKDGPFDYMSVTPPY 241
++ FD + + PPY
Sbjct: 110 --REAQFDLVFLDPPY 123
>gi|331007676|ref|ZP_08330812.1| Ribosomal RNA small subunit methyltransferase D [gamma
proteobacterium IMCC1989]
gi|330418519|gb|EGG93049.1| Ribosomal RNA small subunit methyltransferase D [gamma
proteobacterium IMCC1989]
Length = 213
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GG+ R +KL +RP + ++ F+ LQ ++ LDL++G+G+
Sbjct: 22 LRIIGGQWRGRKLAIADVDGLRPTGDRIRETLFNWLQ------GNIVERYCLDLFAGSGA 75
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET--FLERAEQFV 226
+G+E +SRG ++V +E P + + + LD S+ V +T ++E+A + V
Sbjct: 76 LGLECLSRGATKVFLLEKHPAAATQL----RQHCERLDASNGEVVECDTLGWIEKASKEV 131
Query: 227 GKD-GPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCL 264
GK+ P D + PP+ A + V D L++ G L
Sbjct: 132 GKNISPIDIAFIDPPFAANLWTAV-----IDSLESSGIL 165
>gi|182435706|ref|YP_001823425.1| RNA methylase [Streptomyces griseus subsp. griseus NBRC 13350]
gi|178464222|dbj|BAG18742.1| putative RNA methylase [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 194
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 15/149 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F ++ G +L R DLY+G+G
Sbjct: 1 MTRVIAGSAGGRRLAVPPGTGTRPTSDRAREGLFSTWEALLG---TLDGARVADLYAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV- 226
+VG+EA+SRG VE DP V V +V ++ E +AEQ V
Sbjct: 58 AVGLEALSRGAVHALLVEADPKAVRTVRD---------NVRTLGLPGAEVRTGKAEQIVT 108
Query: 227 --GKDGPFDYMSVTPPYTAVDYEVVEYPL 253
P+D + + PPY D ++ E L
Sbjct: 109 GPAPADPYDILFLDPPYAVTDDDLREILL 137
>gi|345869349|ref|ZP_08821307.1| methyltransferase [Thiorhodococcus drewsii AZ1]
gi|343923272|gb|EGV33964.1| methyltransferase [Thiorhodococcus drewsii AZ1]
Length = 191
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 14/134 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GG+ R ++L P + +RP + V+ F+ + + R LD++SG+G+
Sbjct: 10 LRIIGGRHRGRRLPFPDQLGLRPTSDRVRETLFNWVAPI------IEGARCLDVFSGSGA 63
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EA SRG EV +E P VV L N E T L+ S+H +LE G
Sbjct: 64 LGFEAASRGAGEVVMLERAPKVVHQ-LRCNAE-TLALEAVSVHQADSLEWLE------GS 115
Query: 229 DGPFDYMSVTPPYT 242
PFD + + PP+
Sbjct: 116 GRPFDLVFLDPPFA 129
>gi|56609587|gb|AAW03320.1| hypothetical protein [Cystobacter fuscus]
Length = 185
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 38/196 (19%)
Query: 109 LQVLGGKARRKKLLSPK--GMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++++ G A+ + L PK +RP + V+ F++L L R LDLY+GT
Sbjct: 1 MRIVAGSAKGRALAGPKTTSKHIRPTADRVRETLFNVLGQ------WLEGQRVLDLYAGT 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAE 223
G++G+EA+SRG V V+ D ++ + N + GF + RVE + RA
Sbjct: 55 GALGLEAVSRGAKGVVLVDSDREALA-LCRANTDTLGF-------SARVEVLAQPVARAL 106
Query: 224 QFVGKDGP-FDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCL 264
+ +G+ G F + PPY A E V+E+ R +
Sbjct: 107 ETLGRRGDRFQLIFADPPYAARVVETVLEGLSAHQLLAEEGTVVIEHDKREPAPEAHAGF 166
Query: 265 VKIKDRRFGRTHLAIY 280
++ RRFG T ++++
Sbjct: 167 TRVDQRRFGDTLVSLF 182
>gi|421491258|ref|ZP_15938624.1| RNA methyltransferase, RsmD family [Streptococcus anginosus SK1138]
gi|400371360|gb|EJP24319.1| RNA methyltransferase, RsmD family [Streptococcus anginosus SK1138]
Length = 179
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 25/162 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + +G RP + VKGA F+++ GR LDLY+G+GS
Sbjct: 1 MRVVAGKYGGRPLKTLEGKTTRPTTDKVKGAIFNMI------GPYFDGGRVLDLYAGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMD---PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+ IEAISRG + VE D ++S +I E F +++E+ RA +
Sbjct: 55 LAIEAISRGMASAVLVEKDRRAQTIISQNIIMTKEKERF------ELLKMES--NRALEL 106
Query: 226 VGKDGPFDYMSVTPPYT----AVDYE-VVEYPLRT-DMLDTC 261
V G FD + + PPY A D E +VE L + D+L C
Sbjct: 107 V--TGQFDLVLLDPPYAKEQIAADIEKLVERELLSDDVLVVC 146
>gi|312127711|ref|YP_003992585.1| methyltransferase [Caldicellulosiruptor hydrothermalis 108]
gi|311777730|gb|ADQ07216.1| methyltransferase [Caldicellulosiruptor hydrothermalis 108]
Length = 184
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 31/190 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + +KL S +RP + VK A F+++ P D ++GTG+
Sbjct: 1 MRVISGQQKGRKLKSANIEGLRPTSDRVKEAIFNMI-----APFLNEKLIVADFFAGTGN 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIE +SRG EV FVE D + N++ NL+ L + I V FL+ K
Sbjct: 56 VGIEFLSRGVREVTFVEKDVRCI-NLIKENLKNLDLLKRARIIKGDVIRFLK------SK 108
Query: 229 DGP-FDYMSVTPPYTAVDY--EVVEYPLRTDMLDTCGCLVK---------------IKDR 270
+ P FD + + PPY + DY E + + + ++ G ++ +++R
Sbjct: 109 NCPVFDIIFLDPPYKS-DYAKECISEIIENNRINENGLIIVESNLEFQYEDENLSILRER 167
Query: 271 RFGRTHLAIY 280
+G T + I+
Sbjct: 168 EYGDTKITIF 177
>gi|374598307|ref|ZP_09671309.1| methyltransferase [Myroides odoratus DSM 2801]
gi|423323455|ref|ZP_17301297.1| RsmD family RNA methyltransferase [Myroides odoratimimus CIP
103059]
gi|373909777|gb|EHQ41626.1| methyltransferase [Myroides odoratus DSM 2801]
gi|404609513|gb|EKB08884.1| RsmD family RNA methyltransferase [Myroides odoratimimus CIP
103059]
Length = 190
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 18/161 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + +KL PK + VRP ++ K A F+IL + + + LDL+SGTGS
Sbjct: 1 MRIISGKLKGRKLSPPKNLPVRPTTDMSKEALFNILNNH----FNFSELQVLDLFSGTGS 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI-HTVRVETFLERAEQFVG 227
+ E SRG + ++ D V+ + ++ D++ + + V FLE+ +
Sbjct: 57 ISYEFASRGVENIVSIDADYGCVNFIKKTAKDF----DLNIVPYKSDVFKFLEKHQ---- 108
Query: 228 KDGPFDYMSVTPPY--TAVDYE-VVEYPLRTDMLDTCGCLV 265
G +D + PPY T +E +V L ++LD G LV
Sbjct: 109 --GTYDIIFADPPYDFTQEQFEKIVTDILNNNLLDEEGMLV 147
>gi|385826087|ref|YP_005862429.1| putative methyltransferase [Lactobacillus johnsonii DPC 6026]
gi|417837761|ref|ZP_12483999.1| ribosomal RNA small subunit methyltransferase D [Lactobacillus
johnsonii pf01]
gi|329667531|gb|AEB93479.1| putative methyltransferase [Lactobacillus johnsonii DPC 6026]
gi|338761304|gb|EGP12573.1| ribosomal RNA small subunit methyltransferase D [Lactobacillus
johnsonii pf01]
Length = 182
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 31/194 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK ++ L + K RP + VKG+ F+ L Q G G+ LDLY+G+G
Sbjct: 1 MRIIAGKYAKRNLYTLKSNATRPTSDKVKGSLFNSLGQFFDG-------GQVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG E V++ V+ N+E T + ++ RA + +
Sbjct: 54 ALGIEAVSRGYDEAVLVDISGQACQ-VIKKNVELTK--EEERFRVLKCSD--NRAIKILQ 108
Query: 228 KDG-PFDYMSVTPPYTAVDY-EVVEYPLRTDMLDTCGCLVK----------------IKD 269
+G FD + + PPY +++ L ++L+ +V IKD
Sbjct: 109 DEGKKFDLVFLDPPYAKQKIVKIMTKLLENNLLNEKALVVAETDEHDELPEVSGFSIIKD 168
Query: 270 RRFGRTHLAIYGPD 283
+ GRT + +Y D
Sbjct: 169 HQLGRTKVKVYERD 182
>gi|239833549|ref|ZP_04681877.1| methyltransferase [Ochrobactrum intermedium LMG 3301]
gi|239821612|gb|EEQ93181.1| methyltransferase [Ochrobactrum intermedium LMG 3301]
Length = 195
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L++P +RP + + + F+IL A P + R LDL++GTG+
Sbjct: 9 VRIVGGKLRGRALVTPSTNAIRPTTDRTRESLFNIL--AHNFPDKVEGARVLDLFAGTGA 66
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER-AEQF-- 225
+G+EA+SRG FVE + +L N+E G + I L R A Q
Sbjct: 67 LGLEALSRGARYATFVE-ESAEGRGLLRQNIEAFGLQGHTKI--------LRRDACQLGI 117
Query: 226 VGKDGPFDYMSVTPPY 241
VG PF+ + PPY
Sbjct: 118 VGTMEPFNLVFADPPY 133
>gi|294084709|ref|YP_003551467.1| hypothetical protein [Candidatus Puniceispirillum marinum IMCC1322]
gi|292664282|gb|ADE39383.1| conserved hypothetical protein 95 [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 189
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R KL + G RP + V+ F+IL + G L+ LDL+SGTG+
Sbjct: 1 MRIIGGRHRGTKLANLGGDKTRPTADRVRENLFNIL-AGGNYGEQLKDAHVLDLFSGTGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
+G+EA+SRG FVE D +S VL N+
Sbjct: 60 LGLEALSRGARTACFVEKDHNALS-VLRANI 89
>gi|345513421|ref|ZP_08792942.1| hypothetical protein BSEG_03646 [Bacteroides dorei 5_1_36/D4]
gi|229437428|gb|EEO47505.1| hypothetical protein BSEG_03646 [Bacteroides dorei 5_1_36/D4]
Length = 186
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 22/147 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-----AGGCPASLRPGRWLDLY 163
++V+ G +R++ P RP + K F++L + G A LDL+
Sbjct: 1 MRVISGIYKRRRFDVPHTFKARPTTDFAKENLFNVLSNNYFDFENGVTA-------LDLF 53
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+GTGS+ IE +SRGC V VE DP +S + E + +R + F
Sbjct: 54 AGTGSISIELVSRGCDRVISVEKDPQHLSFISQVMRE----VKTDKCFPIRADVF----- 104
Query: 224 QFVGK-DGPFDYMSVTPPYTAVDYEVV 249
+F+ K FD++ PPYT D E +
Sbjct: 105 RFIDKCSEQFDFIFADPPYTLKDLESI 131
>gi|417936334|ref|ZP_12579651.1| RNA methyltransferase, RsmD family [Streptococcus infantis X]
gi|343403243|gb|EGV15748.1| RNA methyltransferase, RsmD family [Streptococcus infantis X]
Length = 213
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 13/135 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
L++++ G + L + G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 34 LMKIVSGIYGGRPLKTLDGKTTRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGSG 87
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ IEA+SRG S VE D N++ N+ T + S +++E+ RA + V
Sbjct: 88 GLSIEAVSRGMSSAVLVEKDRR-AQNIVAENIRMTK--ETSKFQLLKMES--SRALEQV- 141
Query: 228 KDGPFDYMSVTPPYT 242
DG FD + + PPY
Sbjct: 142 -DGVFDLIFLDPPYA 155
>gi|336395748|ref|ZP_08577147.1| N6-adenine-specific methylase (putative) [Lactobacillus farciminis
KCTC 3681]
Length = 182
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 34/192 (17%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R L + + RP VK A F +L + G LDL++GTGS
Sbjct: 1 MKVVSGKFRGLNLKAVPTNNTRPTSAKVKEAVFSMLSP------YMVDGVALDLFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT----GFLDVSSIHTVRVETFLERAEQ 224
+GIEA+SRG + + V+ + N + N+E T F+ + S T E ++
Sbjct: 55 LGIEAVSRGYQQAYLVD-KAYKAINTIKENVEKTREEDSFVVIKSSAT-------EALKK 106
Query: 225 FVGKDGPFDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGCLVK---------------IK 268
F + FD + + PPY + +++ + D+L+ +V IK
Sbjct: 107 FEDEKVKFDLVFLDPPYRMKITEQIISDMVDNDLLNDGAVIVDETNYDIDLELEQIELIK 166
Query: 269 DRRFGRTHLAIY 280
++R+ T +A+Y
Sbjct: 167 EKRYKDTKVAMY 178
>gi|384549883|ref|YP_005739135.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus JKD6159]
gi|302332732|gb|ADL22925.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus JKD6159]
Length = 180
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 14/135 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER-AEQFVG 227
+GIEA+SRG +V FV+ + V V+ NL S ++ + L+ +++++
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-VIKSNLANLDLEAQSEVYKNNADRALKALSKRYI- 110
Query: 228 KDGPFDYMSVTPPYT 242
FD + + PPY
Sbjct: 111 ---QFDVIFLDPPYN 122
>gi|344198761|ref|YP_004783087.1| methyltransferase [Acidithiobacillus ferrivorans SS3]
gi|343774205|gb|AEM46761.1| methyltransferase [Acidithiobacillus ferrivorans SS3]
Length = 189
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 65/142 (45%), Gaps = 32/142 (22%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ ++ G+ R ++LL+P G +RP V+ F+ L GG A R LDL++G+G+
Sbjct: 3 VSIIAGRHRGRRLLTPAGRSLRPTPGAVRETLFNWL---GGQVAGARV---LDLFAGSGA 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG EV FVE DP L NL G A+Q G
Sbjct: 57 LGLEAWSRGAREVVFVEKDP-QHRQFLSRNLAACGVA----------------AQQLAGT 99
Query: 229 DG---------PFDYMSVTPPY 241
D PFD + PP+
Sbjct: 100 DAWGYLQYCPRPFDIIFADPPF 121
>gi|359791737|ref|ZP_09294577.1| methyltransferase [Mesorhizobium alhagi CCNWXJ12-2]
gi|359252210|gb|EHK55488.1| methyltransferase [Mesorhizobium alhagi CCNWXJ12-2]
Length = 184
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 8/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +P+ +RP + + A F++L P L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLATPRTNAIRPTTDRTREALFNVLAHR--FPDRLEGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG S F+E D ++ N+E G + I R T L A G
Sbjct: 59 LGLEAMSRGASFCMFIE-DSAEGRGLVRDNVEAFGLTGRTKIFR-RDATGLGEA----GT 112
Query: 229 DGPFDYMSVTPPY 241
PF + PPY
Sbjct: 113 VQPFGLVFADPPY 125
>gi|423263019|ref|YP_007013044.1| Ribosomal RNA small subunit methyltransferase D [Mycoplasma
hyorhinis SK76]
gi|422035556|gb|AFX74398.1| Ribosomal RNA small subunit methyltransferase D [Mycoplasma
hyorhinis SK76]
Length = 183
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 32/158 (20%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++++ GK R + +P VRPM + + A F LQ + R LDL+SGTG
Sbjct: 1 MIRIIAGKYRGLLIKNPDFNIVRPMSDRTREAIFSSLQFF------IPDKRVLDLFSGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG EV E+D V N+ +++ + H++ F++R V
Sbjct: 55 AIGIEALSRGAKEVIASELDKKVFDNI----------VELKNKHSIE-NYFIQRKSALVL 103
Query: 228 KD----GPFDYMSVTPPYTAV-----------DYEVVE 250
D F + + PP+ + DY+++E
Sbjct: 104 LDEVQNQKFSIIFLDPPHAQIEVTKASFAKIYDYQILE 141
>gi|312113042|ref|YP_004010638.1| methyltransferase [Rhodomicrobium vannielii ATCC 17100]
gi|311218171|gb|ADP69539.1| methyltransferase [Rhodomicrobium vannielii ATCC 17100]
Length = 185
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 7/134 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + + +P G RP + V+ + F+IL P L R LDL++GTG+
Sbjct: 1 MRIVGGRFRGRGIAAPDGTTTRPTSDRVRESLFNILVHGIDGP-PLEGARVLDLFAGTGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + FVE D + N+E G S + R T L A
Sbjct: 60 LGLEALSRGAAYCLFVE-DEAAARGAIRENIEALGLTGASKLWR-RDATKLGVAAPMQ-- 115
Query: 229 DGPFDYMSVTPPYT 242
PF + PPY
Sbjct: 116 --PFQLVFADPPYA 127
>gi|374309684|ref|YP_005056114.1| methyltransferase [Granulicella mallensis MP5ACTX8]
gi|358751694|gb|AEU35084.1| methyltransferase [Granulicella mallensis MP5ACTX8]
Length = 191
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GGK R + L S +G+ RP + ++ F++L + R++DLY+G+G+
Sbjct: 1 MRVIGGKFRSRVLQSSRGLATRPTSDRLRETLFNVL------ALRIEGARFVDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
VGIEA+SRG F E P V+ +
Sbjct: 55 VGIEALSRGAQFCWFAEKAPAAVTAI 80
>gi|309810295|ref|ZP_07704133.1| RNA methyltransferase, RsmD family [Dermacoccus sp. Ellin185]
gi|308435723|gb|EFP59517.1| RNA methyltransferase, RsmD family [Dermacoccus sp. Ellin185]
Length = 223
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 63/113 (55%), Gaps = 6/113 (5%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G A ++L +P G RP + V+ A F L+ G ++ LDLY+G+G
Sbjct: 1 MTRIIAGSAGGRRLDTPPGAGTRPTSDRVREALFSRLEHLG----AMLGADVLDLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220
++G+EA SRG + FVE+D V+ V+ N+ GF V + T VE FLE
Sbjct: 57 ALGLEAFSRGAASATFVEVDR-RVATVIRTNVRNLGFSPVRVV-TQAVEKFLE 107
>gi|395778687|ref|ZP_10459199.1| RsmD family RNA methyltransferase [Bartonella elizabethae Re6043vi]
gi|423714999|ref|ZP_17689223.1| RsmD family RNA methyltransferase [Bartonella elizabethae F9251]
gi|395417895|gb|EJF84232.1| RsmD family RNA methyltransferase [Bartonella elizabethae Re6043vi]
gi|395430483|gb|EJF96525.1| RsmD family RNA methyltransferase [Bartonella elizabethae F9251]
Length = 188
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 18/139 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK + L SP +RP + + + F+IL S R LDL++GTG+
Sbjct: 1 MRIIGGKFAGRVLFSPVDQSIRPTSDRTRESLFNILSSRE--EQFWTNKRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL--DVSSIHTVRVETFLERAEQFV 226
+GIEA+SRG FVE ++E G L ++ + + L R +
Sbjct: 59 LGIEALSRGAKAAVFVE-----------NSVEGRGLLQKNIEAFELQSIGRILRRDATKL 107
Query: 227 GKDG---PFDYMSVTPPYT 242
GK G PFD + PPY+
Sbjct: 108 GKIGTMLPFDVIFADPPYS 126
>gi|417793688|ref|ZP_12440960.1| RNA methyltransferase, RsmD family [Streptococcus oralis SK255]
gi|334272343|gb|EGL90709.1| RNA methyltransferase, RsmD family [Streptococcus oralis SK255]
Length = 179
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 13/134 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFDGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRR-AQAIVTANIQMTK--EVSKFQLLKMEA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYT 242
GPFD + + PPY
Sbjct: 108 TGPFDLVFLDPPYA 121
>gi|415711731|ref|ZP_11464385.1| hypothetical protein CGSMWGv55152_02411 [Gardnerella vaginalis
55152]
gi|388057847|gb|EIK80660.1| hypothetical protein CGSMWGv55152_02411 [Gardnerella vaginalis
55152]
Length = 194
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 74/150 (49%), Gaps = 22/150 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ V+ G+ + L + K RP + K A F L S G C + R LDL++GT +
Sbjct: 1 MHVIAGRFKGTPLCAAKSC-TRPTTDRTKEAIFSRLDSWGVCDGA----RVLDLFAGTAA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVS------NVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
+GIEAISRG E+ VE + + VL EW+ L +VRV +RA
Sbjct: 56 LGIEAISRGAKELVCVEANAAAAALITKTVKVLQSKSEWSEEL------SVRVNK--KRA 107
Query: 223 EQFVG--KDGPFDYMSVTPPYTAVDYEVVE 250
EQFV FD + + PPY A++ E VE
Sbjct: 108 EQFVQDYSGEAFDLVFIDPPY-ALETEQVE 136
>gi|376316146|emb|CCF99545.1| RsmD family RNA methyltransferase [uncultured Dokdonia sp.]
Length = 186
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 82/166 (49%), Gaps = 26/166 (15%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ GK + +++ +PK + VRP ++ K A F+I++S + LDL++GTG
Sbjct: 1 MTRIISGKYKGRRIAAPKKLPVRPTTDMAKEALFNIIRS----NYHISQLSVLDLFAGTG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF--LERAEQF 225
++ E SRG ++ V+ V + + E+ SIH ++ + F LERA
Sbjct: 57 NISYEFASRGTDQITAVDGHYGCVQFINKTSQEFD-----FSIHAIKSDVFKYLERAT-- 109
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVVEYP------LRTDMLDTCGCLV 265
G +D + PPY D ++ E+ + ++L+ G L+
Sbjct: 110 ----GSYDIIFADPPY---DIDIKEFEKIVTLVFKNNLLEQDGILI 148
>gi|365157031|ref|ZP_09353313.1| RsmD family RNA methyltransferase [Bacillus smithii 7_3_47FAA]
gi|363626057|gb|EHL77064.1| RsmD family RNA methyltransferase [Bacillus smithii 7_3_47FAA]
Length = 190
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 73/134 (54%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + K+L + G RP + VK A F+++ G LDL++G+G
Sbjct: 1 MRVISGICKGKQLKAVPGKSTRPTTDKVKEAIFNMV------GPYFSGGIGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG ++ FV+ D + + N+++ F + S ++ R ++F RA Q + K
Sbjct: 55 LGIEALSRGFEKMIFVDKDSKAIQTIH-ANIDFCSFREQSEVY--RNDSF--RALQVLKK 109
Query: 229 DG-PFDYMSVTPPY 241
G FD + + PPY
Sbjct: 110 RGIRFDGVFLDPPY 123
>gi|311029899|ref|ZP_07707989.1| putative methyltransferase [Bacillus sp. m3-13]
Length = 228
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 15/160 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + ++L + GM+ RP + VK + F+++ G LDL+ G+GS
Sbjct: 39 MRVVSGKWKGRQLKAVPGMNTRPTTDKVKESVFNMI------GPYFDGGLALDLFGGSGS 92
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
+GIEA+SRG +V FV+ D + + I + ++V VR L++ E
Sbjct: 93 LGIEALSRGVDKVIFVDKDGKAIQTIKQNIETFQVGEQVEVYRNDAVRALNALKKREI-- 150
Query: 227 GKDGPFDYMSVTPPYTAVDYEVVEYPLRT-DMLDTCGCLV 265
FD + + PPY + E + + + D+L+ G ++
Sbjct: 151 ----KFDLILLDPPYKKHNLEELIHKISDFDLLEQNGLIM 186
>gi|116626789|ref|YP_828945.1| methyltransferase [Candidatus Solibacter usitatus Ellin6076]
gi|116229951|gb|ABJ88660.1| putative methyltransferase [Candidatus Solibacter usitatus
Ellin6076]
Length = 176
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 23/186 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R +KL S G RP + ++ FDILQ+ + ++D Y+GTG+
Sbjct: 1 MRIIAGEYRSRKLKSLPGDATRPTSDRLRETIFDILQT------RIEGAVFVDAYAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE--QFV 226
VGIEA+SRG V F+E + + + + NL ++++ V LER V
Sbjct: 55 VGIEALSRGARHVFFLEKNRAAL-DAIRENLASLKAERRATVYAGAVLVTLERCRTADIV 113
Query: 227 GKDGPFD----------YMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKDRRFGRTH 276
D P+D + PP +V++ R + + G L + + + G
Sbjct: 114 FLDPPYDQEREYAAALELLGADPPALV----IVQHTFRFKLGEAYGGLGRTRVLKQGDNA 169
Query: 277 LAIYGP 282
L+ Y P
Sbjct: 170 LSFYAP 175
>gi|42518924|ref|NP_964854.1| hypothetical protein LJ0998 [Lactobacillus johnsonii NCC 533]
gi|41583210|gb|AAS08820.1| hypothetical protein LJ_0998 [Lactobacillus johnsonii NCC 533]
Length = 182
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 31/194 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK ++ L + K RP + VKG+ F+ L Q G G+ LDLY+G+G
Sbjct: 1 MRIIAGKYAKRNLHTLKSNATRPTSDKVKGSLFNSLGQFFDG-------GQVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG E V++ V+ N+E T + ++ RA + +
Sbjct: 54 ALGIEAVSRGYDEAVLVDISGQACQ-VIKKNVELTK--EEERFRVLKCSD--NRAIKILQ 108
Query: 228 KDG-PFDYMSVTPPYTAVDY-EVVEYPLRTDMLDTCGCLVK----------------IKD 269
+G FD + + PPY +++ L ++L+ +V IKD
Sbjct: 109 DEGKKFDLIFLDPPYAKQKIVKIMTKLLENNLLNEKALVVAETDEHDELPEVSGFSIIKD 168
Query: 270 RRFGRTHLAIYGPD 283
+ GRT + +Y D
Sbjct: 169 HQLGRTKVKVYERD 182
>gi|149184426|ref|ZP_01862744.1| N6-adenine-specific methylase [Erythrobacter sp. SD-21]
gi|148831746|gb|EDL50179.1| N6-adenine-specific methylase [Erythrobacter sp. SD-21]
Length = 181
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 15/135 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R +KL++PKG RP + + F++L S G L LDL++G+G+
Sbjct: 1 MRIIAGDWRGRKLVAPKGEGTRPTADRTRETLFNMLASRLGGFEGLSV---LDLFAGSGA 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE--QFV 226
+G+EA+SRG + FVE +P + + N++ LD RV T +++A
Sbjct: 58 LGLEALSRGAAHCLFVEQEPDAIKAIR-ANID---ALD------CRVRTQVQQASVMSLA 107
Query: 227 GKDGPFDYMSVTPPY 241
P D + + PPY
Sbjct: 108 PAKAPHDLILLDPPY 122
>gi|85819140|gb|EAQ40299.1| conserved hypothetical protein [Dokdonia donghaensis MED134]
Length = 186
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 81/163 (49%), Gaps = 20/163 (12%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ GK + +++ +PK + VRP ++ K A F+I++S + LDL++GTG
Sbjct: 1 MTRIISGKYKGRRIAAPKKLPVRPTTDMAKEALFNIIRS----NYHISQLSVLDLFAGTG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF--LERAEQF 225
++ E SRG ++ V+ V + + E+ SIH ++ + F LERA
Sbjct: 57 NISYEFASRGTDQITAVDGHYGCVQFINKTSQEFD-----FSIHAIKSDVFKYLERAT-- 109
Query: 226 VGKDGPFDYMSVTPPY--TAVDYE-VVEYPLRTDMLDTCGCLV 265
G +D + PPY D+E + + ++L+ G L+
Sbjct: 110 ----GTYDIIFADPPYDIDIKDFEKIATLVFKNNLLEQDGVLI 148
>gi|295696053|ref|YP_003589291.1| methyltransferase [Kyrpidia tusciae DSM 2912]
gi|295411655|gb|ADG06147.1| methyltransferase [Kyrpidia tusciae DSM 2912]
Length = 195
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 83/196 (42%), Gaps = 31/196 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L G RP + VK A F IL GG SL G LD ++GTG+
Sbjct: 1 MRVVAGELGGRPLAGVPGRGTRPTADRVKEAMFSIL---GG---SLDGGWALDAFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV-- 226
+GIEA+SRG F+E P + VL NL+ G + + V L R +
Sbjct: 55 LGIEALSRGAERAVFIEKSPAAL-RVLRGNLKRLGLDARCRVLPMDVRVALHRLNALIPV 113
Query: 227 ----GKDGPFDYMSVTPPYT---AVDY---------------EVVEYPLRTDMLDTCGCL 264
G+ F ++ PPY AVD VVE +T + D G
Sbjct: 114 AGVSGQAMAFRWVFFDPPYKMAGAVDLLGELDRLGLVEAGAVAVVETSAQTAVPDKIGMW 173
Query: 265 VKIKDRRFGRTHLAIY 280
+ K +G T L Y
Sbjct: 174 IHWKRSTYGDTALTFY 189
>gi|290473619|ref|YP_003466491.1| methyltransferase [Xenorhabdus bovienii SS-2004]
gi|289172924|emb|CBJ79695.1| putative methyltransferase with SAM-dependent methyltransferase
domain [Xenorhabdus bovienii SS-2004]
Length = 199
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 16/134 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R +KL P +RP + V+ F+ L ++ R LD +SG+G+
Sbjct: 13 IRIIGGKWRGRKLPVPDSEGLRPTTDRVRETLFNWLMPI------IQEARCLDCFSGSGA 66
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SR S +E D V L NL L + + V+ T Q++ +
Sbjct: 67 LGIEALSRNASHATLLEYDRHVAKQ-LSANL---ALLKAENANVVQGNTL-----QYLNQ 117
Query: 229 DG-PFDYMSVTPPY 241
G PFD + + PP+
Sbjct: 118 TGTPFDVVFLDPPF 131
>gi|311113804|ref|YP_003985026.1| RsmD family RNA methyltransferase [Rothia dentocariosa ATCC 17931]
gi|310945298|gb|ADP41592.1| RsmD family RNA methyltransferase [Rothia dentocariosa ATCC 17931]
Length = 203
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 19/148 (12%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G A +L S G + RP + VK + F L+S G ++ R LD Y+G+G
Sbjct: 1 MSRIIAGTAGGLRLASVPGENTRPTTDRVKESLFSKLESYG----VVQGARVLDAYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVS----NVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
++G EA+SRG + V FVE P NV + TG V+ A+
Sbjct: 57 ALGCEALSRGAASVEFVEKHPKACEVTRRNVAATSKAATGVTRVTQ----------GSAQ 106
Query: 224 QFVG-KDGPFDYMSVTPPYTAVDYEVVE 250
+V GP+D + + PPY +V++
Sbjct: 107 SYVAVHSGPWDLVFLDPPYAFTQDQVLD 134
>gi|384197801|ref|YP_005583545.1| RsmD family RNA methyltransferase [Bifidobacterium breve
ACS-071-V-Sch8b]
gi|333109930|gb|AEF26946.1| RNA methyltransferase, RsmD family [Bifidobacterium breve
ACS-071-V-Sch8b]
gi|339479906|gb|ABE96373.1| Methyltransferase [Bifidobacterium breve UCC2003]
Length = 193
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 20/140 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L +PK RP + K A F L S G L R LDL++GTG+
Sbjct: 1 MRVISGRFKGAALATPK-TGTRPTTDRTKEAIFSHLDSWG----VLDDARVLDLFAGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV------LIPNLEWTGFLDVSSIHTVRVETFLERA 222
+GIEA+SRG E+ VE + + L N W +++ ++A
Sbjct: 56 LGIEALSRGARELVAVESSRPAAALIAKTFAQLQKNRSWDA--------SLKARVLTKKA 107
Query: 223 EQFVGKDG-PFDYMSVTPPY 241
EQ G G PFD + + PPY
Sbjct: 108 EQVTGGFGEPFDVIFIDPPY 127
>gi|108760564|ref|YP_631581.1| methyltransferase [Myxococcus xanthus DK 1622]
gi|108464444|gb|ABF89629.1| putative methyltransferase [Myxococcus xanthus DK 1622]
Length = 185
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 30/192 (15%)
Query: 109 LQVLGGKARRKKLLSPKG--MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++++ G A+ + L PK + +RP + V+ F++L L R LDLY+GT
Sbjct: 1 MRIVAGTAKGRALAGPKSSSLHIRPTADRVRETLFNVLGQ------FLDGQRVLDLYAGT 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G++G+EA+SRG + V+ D ++ + N + G + V LE ++
Sbjct: 55 GALGLEAVSRGAGQAVLVDQDREALT-LCRENAQAVGLAGQVEVLAAPVARALETLKR-- 111
Query: 227 GKDGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIK 268
+ F+ + PPY A E VVE+ R DT L +
Sbjct: 112 -RGDRFELIFADPPYAARVVETVLDGIVAAGLLTPSGMVVVEHDKREAAPDTHAGLDRED 170
Query: 269 DRRFGRTHLAIY 280
RRFG T ++ Y
Sbjct: 171 QRRFGDTLVSFY 182
>gi|293374736|ref|ZP_06621044.1| RNA methyltransferase, RsmD family [Turicibacter sanguinis PC909]
gi|325837641|ref|ZP_08166488.1| RNA methyltransferase, RsmD family [Turicibacter sp. HGF1]
gi|292646650|gb|EFF64652.1| RNA methyltransferase, RsmD family [Turicibacter sanguinis PC909]
gi|325490943|gb|EGC93242.1| RNA methyltransferase, RsmD family [Turicibacter sp. HGF1]
Length = 183
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 79/158 (50%), Gaps = 11/158 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + + + + KG + RP + VK + F+I+ G LDL+ G+G+
Sbjct: 1 MRVVAGTLKGRSIKAVKGTNTRPTTDKVKESIFNII------GPYFDGGIALDLFGGSGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE++SRG +V FV+ + + N + N++ D I+ + + V +
Sbjct: 55 LGIESLSRGIDKVIFVDRETIAI-NTIKENVKDLRIEDCVEIYR---NDYFRALKALVKR 110
Query: 229 DGPFDYMSVTPPYTAVDY-EVVEYPLRTDMLDTCGCLV 265
D FD + + PPY E++E+ ++L + G ++
Sbjct: 111 DIQFDLILLDPPYKGQKINEIIEFVNEHNLLASGGIIM 148
>gi|114321803|ref|YP_743486.1| methyltransferase [Alkalilimnicola ehrlichii MLHE-1]
gi|114228197|gb|ABI57996.1| 16S rRNA m(2)G-966 methyltransferase [Alkalilimnicola ehrlichii
MLHE-1]
Length = 192
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 54/86 (62%), Gaps = 6/86 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GG R ++L P+G D+RP + ++ F+ +Q A + R LDL++G+G
Sbjct: 5 LRIIGGAWRGRRLAVPRGPDLRPTGDRIRETLFNWVQ------ARIPGARCLDLFAGSGV 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV 194
+G+EA+SRG +EV FVE + V + +
Sbjct: 59 LGLEALSRGAAEVVFVERNARVAAAL 84
>gi|260886980|ref|ZP_05898243.1| RNA methyltransferase, RsmD family [Selenomonas sputigena ATCC
35185]
gi|330839234|ref|YP_004413814.1| methyltransferase [Selenomonas sputigena ATCC 35185]
gi|260863042|gb|EEX77542.1| RNA methyltransferase, RsmD family [Selenomonas sputigena ATCC
35185]
gi|329746998|gb|AEC00355.1| methyltransferase [Selenomonas sputigena ATCC 35185]
Length = 190
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 30/185 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +L +PKG RP + +K + F+IL + LDL++GTG+
Sbjct: 1 MRIITGTARGCRLKTPKGEATRPTADRIKESLFNILGR------RVEAAHVLDLFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + FV+ ++++ N T L+ + + V L R G
Sbjct: 55 LGLEALSRGAASALFVDER---TASLIEENAAKTRLLERAEVVCADVLRILTR---LGGA 108
Query: 229 DGPFDYMSVTPPY---------TAVDYE---------VVEYPLRTDMLDTCGCLVKIKDR 270
F+ + PPY ++VD E +VE+ + L L +++
Sbjct: 109 GRSFNLIFCDPPYRQGLWEKVLSSVDREGLLAPGGCMIVEHGAEEEALPALENLRCVREE 168
Query: 271 RFGRT 275
R+G+T
Sbjct: 169 RYGKT 173
>gi|254383284|ref|ZP_04998637.1| RNA methylase [Streptomyces sp. Mg1]
gi|194342182|gb|EDX23148.1| RNA methylase [Streptomyces sp. Mg1]
Length = 192
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 14/164 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + ++ F +S G + R LDLY+G+G
Sbjct: 1 MTRVIAGSAGGRRLAVPPGTGTRPTSDRMREGLFSTWESLHGVEGA----RVLDLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+E++SRG VE D + + N+E G L + + E + A Q
Sbjct: 57 AVGLESLSRGAGRALLVEPDA-KAAKAIRDNIEAVG-LPGAEFRAGKAEQIVAAAAQ--- 111
Query: 228 KDGPFDYMSVTPPYTAVDYEVVE---YPLRTDMLDTCGCLVKIK 268
P+D + + PPY AVD++ + LR++ T LV ++
Sbjct: 112 -GEPYDIVFLDPPY-AVDHQELREILITLRSNGWLTDDALVTVE 153
>gi|312143898|ref|YP_003995344.1| methyltransferase [Halanaerobium hydrogeniformans]
gi|311904549|gb|ADQ14990.1| methyltransferase [Halanaerobium hydrogeniformans]
Length = 179
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 30/189 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A +L S KG +VRP ++ VK + F ++ + LDL++G G+
Sbjct: 1 MRVIAGTAGGIQLKSIKGRNVRPTLDRVKESLFSMI------AYYIVDAVVLDLFAGFGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E FVE+ + ++ NL + + + VR + + F
Sbjct: 55 LGIEALSRGAKEAEFVEIKSKHTA-LIEENLNKCNLAEKARV--VRSDVYKYLGSTF--- 108
Query: 229 DGPFDYMSVTPPYT-AVDYEVVEYPLRTDMLDTCGCLV----------------KIKDRR 271
+D + + PPY + + V+ L+ ++L+ G L+ IK R
Sbjct: 109 -KKYDLIFMDPPYNKKLADKAVQLILKNEILNKNGILIIEKSTEEEIKNYQELEIIKSRD 167
Query: 272 FGRTHLAIY 280
+G T + IY
Sbjct: 168 YGNTLILIY 176
>gi|240849923|ref|YP_002971312.1| hypothetical protein Bgr_02750 [Bartonella grahamii as4aup]
gi|240267046|gb|ACS50634.1| hypothetical protein Bgr_02750 [Bartonella grahamii as4aup]
Length = 188
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 18/139 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK + L SP +RP + + + F+IL S R LDL++GTG+
Sbjct: 1 MRIIGGKFAGRVLFSPVNQSIRPTSDRTRESLFNILSSRE--EQFWTNKRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL--DVSSIHTVRVETFLERAEQFV 226
+GIEA+SRG FVE ++E G L ++ + + L R +
Sbjct: 59 LGIEALSRGAKAAVFVE-----------NSVEGRGLLQKNIEAFELQSIGRILRRDATKL 107
Query: 227 GKDG---PFDYMSVTPPYT 242
G G PFD + PPY+
Sbjct: 108 GNIGTMLPFDVICADPPYS 126
>gi|357401977|ref|YP_004913902.1| RNA methylase [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|386358039|ref|YP_006056285.1| RNA methylase [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|337768386|emb|CCB77099.1| putative RNA methylase [Streptomyces cattleya NRRL 8057 = DSM
46488]
gi|365808547|gb|AEW96763.1| putative RNA methylase [Streptomyces cattleya NRRL 8057 = DSM
46488]
Length = 193
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 15/146 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F Q+ G L R LDLY G+G
Sbjct: 1 MTRVIAGAAGGRRLAVPPGQGTRPTSDRAREGLFSTWQALHG---PLTGARVLDLYGGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG + V VE D V V+ N V ++ E +AE+ V
Sbjct: 58 AVGLEALSRGAAHVLLVEADARAV-RVIREN--------VRALGLPGAEVRAAKAEKVVA 108
Query: 228 K---DGPFDYMSVTPPYTAVDYEVVE 250
P+D + + PPY D E+ E
Sbjct: 109 GPPPADPYDVVFLDPPYAVSDDELRE 134
>gi|326776331|ref|ZP_08235596.1| methyltransferase [Streptomyces griseus XylebKG-1]
gi|326656664|gb|EGE41510.1| methyltransferase [Streptomyces griseus XylebKG-1]
Length = 194
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 15/149 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F ++ G +L R DLY+G+G
Sbjct: 1 MTRVIAGSAGGRRLAVPPGTGTRPTSDRAREGLFSTWEALLG---TLDGARVADLYAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV- 226
+VG+EA+SRG VE DP V V +V ++ E +AEQ V
Sbjct: 58 AVGLEALSRGAVHALLVEADPKAVRTVRD---------NVRTLGLPGAEVRSGKAEQIVT 108
Query: 227 --GKDGPFDYMSVTPPYTAVDYEVVEYPL 253
P+D + + PPY D ++ E L
Sbjct: 109 GPAPADPYDILFLDPPYAVTDDDLREILL 137
>gi|399546705|ref|YP_006560013.1| ribosomal RNA small subunit methyltransferase D [Marinobacter sp.
BSs20148]
gi|399162037|gb|AFP32600.1| Ribosomal RNA small subunit methyltransferase D [Marinobacter sp.
BSs20148]
Length = 217
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 70/145 (48%), Gaps = 16/145 (11%)
Query: 98 KSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG 157
KS R T L+++GG R +KL P VRP + F+ L+ L
Sbjct: 23 KSASGRGTLGELRIIGGDWRSRKLTFPDSGGVRPTPARTRETLFNWLRF------HLAGA 76
Query: 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217
R LDL++G+G++G+EA+SRG + FV+ P +V L NL L + VR +T
Sbjct: 77 RCLDLFAGSGALGLEALSRGAAHSVFVDHTPELV-KALNSNL---ALLQADNARVVRQDT 132
Query: 218 FLERAEQFVGKDG-PFDYMSVTPPY 241
+ F+ G FD + + PP+
Sbjct: 133 -----DAFLASPGESFDIVFIDPPF 152
>gi|326693818|ref|ZP_08230823.1| N6-adenine-specific methylase [Leuconostoc argentinum KCTC 3773]
Length = 184
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 10/133 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ R +L + G RP + VK A F +L L G LDLY+GTG
Sbjct: 1 MRVVAGRFRGTRLEAVAGDKTRPTTDKVKEAMFSMLMP------FLDGGNVLDLYAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + V+ + V+ N++ T + SI + + L+ FV
Sbjct: 55 LGIEAVSRGMTHATLVDRQFQAIK-VIQSNVDKTHDIAAFSILKMPAQQALQN---FVAA 110
Query: 229 DGPFDYMSVTPPY 241
FD + + PPY
Sbjct: 111 QQTFDLVFLDPPY 123
>gi|326790887|ref|YP_004308708.1| methyltransferase [Clostridium lentocellum DSM 5427]
gi|326541651|gb|ADZ83510.1| methyltransferase [Clostridium lentocellum DSM 5427]
Length = 184
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 12/141 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ R L +P+GM+ RP + +K F+++ A P +LDL+SG+G+
Sbjct: 1 MRVISGRCRGTHLEAPEGMNTRPTTDRIKETLFNMI--AFDIPEC----EFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG VE D ++ + NLE T + + V L+R E
Sbjct: 55 MAIEALSRGGKRAVLVEKDTKALA-CIEQNLEKTRLKAEAKVVASDVFEALKRLE----- 108
Query: 229 DGPFDYMSVTPPYTAVDYEVV 249
FD + + PPY + + V
Sbjct: 109 GEQFDIIFMDPPYALENIQTV 129
>gi|403515269|ref|YP_006656089.1| hypothetical protein R0052_07490 [Lactobacillus helveticus R0052]
gi|403080707|gb|AFR22285.1| hypothetical protein R0052_07490 [Lactobacillus helveticus R0052]
Length = 182
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 29/193 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L + K RP + VK + F+ L G LDLY+G+G+
Sbjct: 1 MRIISGKYAKRNLFTLKSNKTRPTSDKVKESLFNSLGQF------FNGGNVLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG V+++ S ++ N+ T + S++ +R L + F
Sbjct: 55 LGIEAVSRGYDHASLVDINHAACS-IIKKNVALTKEENRFSVYNMRSNAAL---KLFAEN 110
Query: 229 DGPFDYMSVTPPYT----AVDYE--------------VVEYPLRTDMLDTCGCLVKIKDR 270
FD + + PPY A D V E T++ D G + IK+
Sbjct: 111 QEKFDLVFLDPPYAKEKIAKDMLQMNKLGLLNSSATIVAETDDHTELGDISGFSL-IKEH 169
Query: 271 RFGRTHLAIYGPD 283
G+T + IY D
Sbjct: 170 HLGKTIVRIYRKD 182
>gi|407770826|ref|ZP_11118192.1| hypothetical protein TH3_15074 [Thalassospira xiamenensis M-5 = DSM
17429]
gi|407286209|gb|EKF11699.1| hypothetical protein TH3_15074 [Thalassospira xiamenensis M-5 = DSM
17429]
Length = 191
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAG----GCPASLRPGRWLDLYS 164
++++GG R + L +P G D RP ++ V+ A F+IL A L G LD Y+
Sbjct: 1 MRIVGGSLRGRLLTAPTGRDTRPTLDRVREALFNILTHASRWYEDDQNPLYDGLILDAYA 60
Query: 165 GTGSVGIEAISRGCSEVHFVEMDPWVVSNV 194
G+G++G+EAISRG + F ++D ++ +
Sbjct: 61 GSGALGLEAISRGAQKAVFFDLDRGALAAI 90
>gi|229098400|ref|ZP_04229345.1| Methyltransferase [Bacillus cereus Rock3-29]
gi|229104492|ref|ZP_04235159.1| Methyltransferase [Bacillus cereus Rock3-28]
gi|229117426|ref|ZP_04246802.1| Methyltransferase [Bacillus cereus Rock1-3]
gi|407706451|ref|YP_006830036.1| methylthioribose-1-phosphate isomerase [Bacillus thuringiensis
MC28]
gi|423378217|ref|ZP_17355501.1| RsmD family RNA methyltransferase [Bacillus cereus BAG1O-2]
gi|423441338|ref|ZP_17418244.1| RsmD family RNA methyltransferase [Bacillus cereus BAG4X2-1]
gi|423448506|ref|ZP_17425385.1| RsmD family RNA methyltransferase [Bacillus cereus BAG5O-1]
gi|423464412|ref|ZP_17441180.1| RsmD family RNA methyltransferase [Bacillus cereus BAG6O-1]
gi|423533754|ref|ZP_17510172.1| RsmD family RNA methyltransferase [Bacillus cereus HuB2-9]
gi|423540990|ref|ZP_17517381.1| RsmD family RNA methyltransferase [Bacillus cereus HuB4-10]
gi|423547228|ref|ZP_17523586.1| RsmD family RNA methyltransferase [Bacillus cereus HuB5-5]
gi|423622990|ref|ZP_17598768.1| RsmD family RNA methyltransferase [Bacillus cereus VD148]
gi|228666036|gb|EEL21502.1| Methyltransferase [Bacillus cereus Rock1-3]
gi|228678934|gb|EEL33144.1| Methyltransferase [Bacillus cereus Rock3-28]
gi|228685017|gb|EEL38950.1| Methyltransferase [Bacillus cereus Rock3-29]
gi|401129100|gb|EJQ36783.1| RsmD family RNA methyltransferase [Bacillus cereus BAG5O-1]
gi|401172178|gb|EJQ79399.1| RsmD family RNA methyltransferase [Bacillus cereus HuB4-10]
gi|401178949|gb|EJQ86122.1| RsmD family RNA methyltransferase [Bacillus cereus HuB5-5]
gi|401259763|gb|EJR65937.1| RsmD family RNA methyltransferase [Bacillus cereus VD148]
gi|401636483|gb|EJS54237.1| RsmD family RNA methyltransferase [Bacillus cereus BAG1O-2]
gi|402417999|gb|EJV50299.1| RsmD family RNA methyltransferase [Bacillus cereus BAG4X2-1]
gi|402420679|gb|EJV52950.1| RsmD family RNA methyltransferase [Bacillus cereus BAG6O-1]
gi|402463973|gb|EJV95673.1| RsmD family RNA methyltransferase [Bacillus cereus HuB2-9]
gi|407384136|gb|AFU14637.1| Methyltransferase [Bacillus thuringiensis MC28]
Length = 188
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 88/196 (44%), Gaps = 40/196 (20%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMI------GPYFDGGTALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ---- 224
+GIEAISRG + FV+ D + V+ NLE IH + E + AE+
Sbjct: 55 LGIEAISRGIEKAIFVDRDSKAIK-VIHQNLESC------RIHE-QAEVYRNDAERAVKA 106
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVVEYP--------LRTDML------------DTCGCL 264
+ ++ FD + + PPY D ++V L D L D+ G L
Sbjct: 107 LIKREMSFDLILIDPPYK--DQKIVSLISVMDQHGLLHRDGLIMSEHGNDVVLPDSIGNL 164
Query: 265 VKIKDRRFGRTHLAIY 280
VK++ +G T ++IY
Sbjct: 165 VKVRAENYGITAISIY 180
>gi|171778740|ref|ZP_02919836.1| hypothetical protein STRINF_00688 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|379704810|ref|YP_005203269.1| RsmD family RNA methyltransferase [Streptococcus infantarius subsp.
infantarius CJ18]
gi|171282697|gb|EDT48121.1| RNA methyltransferase, RsmD family [Streptococcus infantarius
subsp. infantarius ATCC BAA-102]
gi|374681509|gb|AEZ61798.1| RNA methyltransferase, RsmD family [Streptococcus infantarius
subsp. infantarius CJ18]
Length = 182
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 15/136 (11%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
L++V+ G + L + G RP + VKGA F+++ GR LDL+SG+G
Sbjct: 3 LMRVVAGNFGGRPLKTLDGKTTRPTTDKVKGAIFNMIGPF------FEGGRVLDLFSGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
S+ IEAISRG E VE + + ++ N++ T H ++++ A + +G
Sbjct: 57 SLAIEAISRGMDEAVLVERNHQAQA-IITENIKMTK--AEKQFHLMKMD-----ANKAIG 108
Query: 228 -KDGPFDYMSVTPPYT 242
GPFD + + PPY
Sbjct: 109 VVKGPFDLVFLDPPYA 124
>gi|384099123|ref|ZP_10000224.1| methyltransferase [Imtechella halotolerans K1]
gi|383834069|gb|EID73518.1| methyltransferase [Imtechella halotolerans K1]
Length = 183
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 18/133 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + K+L +PK + VRP + K A F+IL + LDL++GTG+
Sbjct: 1 MRIISGKYKSKRLTAPKKLPVRPTTDFAKEALFNILNND----FYFDDITVLDLFAGTGN 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVS--NVLIPNLEWTGFLDVSSIHTVR--VETFLERAE- 223
+ E SRGCS++ V+ + N + L++ I TV+ V +FLER +
Sbjct: 57 ISFEFASRGCSDITSVDAHFGCIQYINQISSELDF-------PIKTVKSDVYSFLERTKL 109
Query: 224 --QFVGKDGPFDY 234
+ D P+D+
Sbjct: 110 TADIIFADPPYDF 122
>gi|374603388|ref|ZP_09676368.1| N6-adenine-specific methylase [Paenibacillus dendritiformis C454]
gi|374390984|gb|EHQ62326.1| N6-adenine-specific methylase [Paenibacillus dendritiformis C454]
Length = 187
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 10/131 (7%)
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
++ G AR + L GM RP + VK A F ++ GR LDL++GTG +G
Sbjct: 1 MISGTARGRTLKPVPGMGTRPTTDKVKEALFSMIGP------YFEGGRALDLFAGTGGLG 54
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
IEA+SRG F++ D + V+ NL TG D + ++ L + ++
Sbjct: 55 IEALSRGAEWAVFIDKDARAI-EVVRGNLTATGLADKAEVYRNDARRAL---KALAKRNL 110
Query: 231 PFDYMSVTPPY 241
F Y+ + PPY
Sbjct: 111 SFHYVFLDPPY 121
>gi|418087649|ref|ZP_12724816.1| methyltransferase [Streptococcus pneumoniae GA47033]
gi|418103649|ref|ZP_12740720.1| methyltransferase [Streptococcus pneumoniae NP070]
gi|418147212|ref|ZP_12783986.1| methylase, putative [Streptococcus pneumoniae GA13637]
gi|419476292|ref|ZP_14016126.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA14688]
gi|419487436|ref|ZP_14027197.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA44128]
gi|421209723|ref|ZP_15666734.1| hypothetical protein AMCSP11_001932 [Streptococcus pneumoniae
2070005]
gi|421218685|ref|ZP_15675574.1| hypothetical protein AMCSP13_002349 [Streptococcus pneumoniae
2070335]
gi|421225801|ref|ZP_15682537.1| hypothetical protein AMCSP06_001953 [Streptococcus pneumoniae
2070768]
gi|421241419|ref|ZP_15697963.1| hypothetical protein AMCSP17_001839 [Streptococcus pneumoniae
2080913]
gi|353757050|gb|EHD37647.1| methyltransferase [Streptococcus pneumoniae GA47033]
gi|353774428|gb|EHD54919.1| methyltransferase [Streptococcus pneumoniae NP070]
gi|353811140|gb|EHD91385.1| methylase, putative [Streptococcus pneumoniae GA13637]
gi|379557872|gb|EHZ22910.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA14688]
gi|379585072|gb|EHZ49933.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA44128]
gi|395572378|gb|EJG32975.1| hypothetical protein AMCSP11_001932 [Streptococcus pneumoniae
2070005]
gi|395582001|gb|EJG42465.1| hypothetical protein AMCSP13_002349 [Streptococcus pneumoniae
2070335]
gi|395588494|gb|EJG48823.1| hypothetical protein AMCSP06_001953 [Streptococcus pneumoniae
2070768]
gi|395606697|gb|EJG66800.1| hypothetical protein AMCSP17_001839 [Streptococcus pneumoniae
2080913]
Length = 179
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 13/134 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R+ L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGRRPLKTLEGKTTRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +V ++++ ERA + V
Sbjct: 55 LSIEAVSRGMSSAVLVERDRK-AQTIVAENIQMTK--EVGKFQLLKMDA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYT 242
G FD + + PPYT
Sbjct: 108 SGEFDLVFLDPPYT 121
>gi|312135042|ref|YP_004002380.1| methyltransferase [Caldicellulosiruptor owensensis OL]
gi|311775093|gb|ADQ04580.1| methyltransferase [Caldicellulosiruptor owensensis OL]
Length = 184
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 29/189 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + +KL S +RP + VK A F+++ P D ++GTG+
Sbjct: 1 MRVISGQQKGRKLKSANIEGLRPTSDRVKEAIFNMI-----APFLNEKLIVADFFAGTGN 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIE +SRG EV FVE D + N++ NL+ L + I V FL+ K
Sbjct: 56 VGIEFLSRGAKEVVFVEKDVRCI-NLIKENLKNLDLLKRARIIKADVIRFLK------SK 108
Query: 229 DGP-FDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGCLVK---------------IKDRR 271
+ P FD + + PPY + E + + + ++ G ++ +++R
Sbjct: 109 NCPVFDIIFLDPPYKSGYAKECISKIIENNRINENGLIIVESNVEFRYEDENLSILRERE 168
Query: 272 FGRTHLAIY 280
+G T + I+
Sbjct: 169 YGDTKITIF 177
>gi|404474700|ref|YP_006706131.1| yhhF N6 adenine specific methylase [Brachyspira pilosicoli B2904]
gi|404436189|gb|AFR69383.1| yhhF N6 adenine specific methylase [Brachyspira pilosicoli B2904]
Length = 182
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 17/157 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ ++ G + KK+++PK D RP V+ A F+I+ + +LDL +G+G+
Sbjct: 1 MHIISGYKKNKKIITPK-RDFRPTQGKVREALFNIIDANDKT--------FLDLCAGSGA 51
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG EA+S+G F+E+D V + N + + I V + +++R
Sbjct: 52 VGFEALSKGAKFAAFIEIDREAVKTIF-TNAKNIFEENQYKIKRVSADDYVKRT------ 104
Query: 229 DGPFDYMSVTPPY-TAVDYEVVEYPLRTDMLDTCGCL 264
+ FD + PPY + + YEV +L+ G L
Sbjct: 105 NDTFDIIFFDPPYHSKIYYEVFLNIFERKLLNDNGYL 141
>gi|347549448|ref|YP_004855776.1| hypothetical protein LIV_2032 [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346982519|emb|CBW86517.1| Putative unknown protein [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 185
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L + G + RP + VK + F I+ LDL++G+G
Sbjct: 1 MRVIAGERKGHALKAVPGNNTRPTTDKVKESLFSIIGP------FFDGDVVLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F++ + + + NLE F D + ++ R E ERA + + K
Sbjct: 55 LGIEALSRGAERAVFIDQAQAAIKTIRL-NLESCHFADRAEVY--RNEA--ERALKLLHK 109
Query: 229 DG-PFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKD 269
+ FD + + PPY E + E+ M DT G VKIK
Sbjct: 110 NEWKFDLVFLDPPYKKQQLEKLLLQLEKLALVSENSRIICEHDKEAVMPDTVGSFVKIKA 169
Query: 270 RRFGRTHLAIY 280
+G T L+I+
Sbjct: 170 VSYGITVLSIF 180
>gi|227889783|ref|ZP_04007588.1| possible rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus
johnsonii ATCC 33200]
gi|227849647|gb|EEJ59733.1| possible rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus
johnsonii ATCC 33200]
Length = 182
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 31/194 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK ++ L + K RP + VKG+ F+ L Q G G+ LDLY+G+G
Sbjct: 1 MRIIAGKYAKRNLHTLKSNATRPTSDKVKGSLFNSLGQFFDG-------GQVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG E V++ V+ N+E T + ++ RA + +
Sbjct: 54 ALGIEAVSRGYDEAVLVDISGQACQ-VIKKNVELTK--EEERFRVLKCSD--NRAIKILQ 108
Query: 228 KDG-PFDYMSVTPPYTAVDY-EVVEYPLRTDMLDTCGCLVK----------------IKD 269
+G FD + + PPY +++ L ++L+ +V IKD
Sbjct: 109 DEGKKFDLVFLDPPYAKQKIVKIMTKLLENNLLNEKALVVAETDEHDELPEVSGFSIIKD 168
Query: 270 RRFGRTHLAIYGPD 283
+ GRT + +Y D
Sbjct: 169 HQLGRTKVKVYERD 182
>gi|330444155|ref|YP_004377141.1| methyltransferase [Chlamydophila pecorum E58]
gi|328807265|gb|AEB41438.1| methyltransferase, putative [Chlamydophila pecorum E58]
Length = 184
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 11/147 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + + L + +RP +VK + F+I C L +LDL++G GS
Sbjct: 1 MRILAGKYKGRSLKTFSERSIRPTCGLVKESLFNI------CAVYLEGADFLDLFAGVGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EA+SRG S V FV+ V ++ N D ++ ++ E ++ ++ K
Sbjct: 55 IGFEALSRGASRVVFVDNSLQAV-RLIHANSRLLEAED--AVMVMKHEAYVA-VQRLAKK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYPLRT 255
FD + + PPY +D +E LR+
Sbjct: 111 HLSFDLIYIDPPYD-LDSSYIEGLLRS 136
>gi|383788432|ref|YP_005473001.1| putative methyltransferase [Caldisericum exile AZM16c01]
gi|381364069|dbj|BAL80898.1| putative methyltransferase [Caldisericum exile AZM16c01]
Length = 186
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 73/134 (54%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSP-KGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++++ GK + +++SP + +++RP + V+ A FD+++ + +LDL++G+G
Sbjct: 1 MRIVSGKFKGMEIISPPRNLELRPTSDRVREAIFDVIR------FDITDKVFLDLFAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VGIEA+S G V+FVE + V +V+ N+ G + I V FL +
Sbjct: 55 AVGIEAVSEGAKFVYFVENNKKAV-DVIKKNIAKFGIREQCKILVRDVFKFLSDPQL--- 110
Query: 228 KDGPFDYMSVTPPY 241
+ D++ + PPY
Sbjct: 111 -EREVDFIFLDPPY 123
>gi|317485389|ref|ZP_07944268.1| RsmD family RNA methyltransferase [Bilophila wadsworthia 3_1_6]
gi|316923348|gb|EFV44555.1| RsmD family RNA methyltransferase [Bilophila wadsworthia 3_1_6]
Length = 188
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 66/134 (49%), Gaps = 11/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP V+ A F +L S G + LR LDL++G+GS
Sbjct: 1 MRIIAGALGGRNLKTVEGPGYRPATAKVREAIFSMLSSRGVVWSGLRV---LDLFAGSGS 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE-RAEQFVG 227
+ EA+SRG EV VE +P VV L N+E D + V FL RA Q
Sbjct: 58 LSFEALSRGAQEVCLVEREPKVV-QCLNQNVEALDVSDRCRVAESDVLRFLRGRAYQ--- 113
Query: 228 KDGPFDYMSVTPPY 241
P+D + PPY
Sbjct: 114 ---PYDVIFADPPY 124
>gi|305682209|ref|ZP_07405013.1| RNA methyltransferase, RsmD family [Corynebacterium matruchotii
ATCC 14266]
gi|305658682|gb|EFM48185.1| RNA methyltransferase, RsmD family [Corynebacterium matruchotii
ATCC 14266]
Length = 193
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 36/200 (18%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G+AR +KL P RP + K F LQ G + LDL++G+G
Sbjct: 1 MTRIISGEARGRKLQVPS-EGTRPTSDRAKEGLFSSLQVRFG----FQDAVVLDLFAGSG 55
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++G+EA SRG +EV VE DP + V+ N E G +V + + ++
Sbjct: 56 ALGLEAASRGAAEVVLVESDPHTCA-VIRRNAEAVGHPNVQVMQMAASAYVAQAPRKY-- 112
Query: 228 KDGPFDYMSVTPPYTAVDYEVVEY--PLRTDMLDTCGCLV-------------------- 265
FD + PPY VVE LR ++D +V
Sbjct: 113 ----FDMVLADPPYDLAPETVVEMLEALRPLLVDGAAVVVERHRDSPHTEWPAGYTPTPQ 168
Query: 266 KIKDRRFG--RTHLAIYGPD 283
K+K R FG R +A++ D
Sbjct: 169 KLKKRTFGIARMDMAVFSAD 188
>gi|296119650|ref|ZP_06838208.1| RNA methyltransferase, RsmD family [Corynebacterium ammoniagenes
DSM 20306]
gi|295967533|gb|EFG80800.1| RNA methyltransferase, RsmD family [Corynebacterium ammoniagenes
DSM 20306]
Length = 189
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 11/141 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G+AR + ++ P+ RP + + F L G S R LDL++G+G
Sbjct: 1 MTRIIAGQARGRTIIVPE-EGTRPTSDRAREGLFSSLAVRWGFEGS----RVLDLFAGSG 55
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA--EQF 225
++G+EA SRG +EVH V+ + N+ N G V IH ++ T+L +A E F
Sbjct: 56 ALGLEAASRGAAEVHLVDNSAQAIKNI-THNAGVVGHPKV-HIHQLQASTYLAQAPREHF 113
Query: 226 --VGKDGPFDYMSVTPPYTAV 244
V D P+D+ V A+
Sbjct: 114 DMVLADPPYDFADVDELLVAI 134
>gi|291288906|ref|YP_003505722.1| methyltransferase [Denitrovibrio acetiphilus DSM 12809]
gi|290886066|gb|ADD69766.1| methyltransferase [Denitrovibrio acetiphilus DSM 12809]
Length = 175
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 22/160 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + ++L++PK +RP + K A F L + + LDL+ GTG+
Sbjct: 1 MKIISGSFKNRQLVTPKDSSIRPTTDKAKNAIFSSLFD------KVHGAKVLDLFCGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVV-SNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
G+EA+SRG S F+++ ++ N I + + +TV RAE V
Sbjct: 55 FGLEALSRGASHCTFIDIHTDLIKKNCQIAD---------NGTYTV----IKGRAEALVE 101
Query: 228 K-DGPFDYMSVTPPYTAVD-YEVVEYPLRTDMLDTCGCLV 265
K G FD + + PPY ++ E+++ ++L G L+
Sbjct: 102 KLRGEFDIIFIDPPYGDIEPLELIKKIKDNEILANEGILI 141
>gi|395787180|ref|ZP_10466781.1| RsmD family RNA methyltransferase [Bartonella birtlesii LL-WM9]
gi|395789310|ref|ZP_10468833.1| RsmD family RNA methyltransferase [Bartonella taylorii 8TBB]
gi|395411604|gb|EJF78125.1| RsmD family RNA methyltransferase [Bartonella birtlesii LL-WM9]
gi|395430357|gb|EJF96401.1| RsmD family RNA methyltransferase [Bartonella taylorii 8TBB]
Length = 185
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 18/138 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK + L +P G +RP + + + F+IL S R LDL++GTG+
Sbjct: 1 MRIVGGKFAGRVLFAPVGQSIRPTSDRTRESLFNILASRE--EQFWTNKRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL--DVSSIHTVRVETFLERAEQFV 226
+GIEA+SRG FVE ++E G L ++ + + L R +
Sbjct: 59 LGIEALSRGAKAAVFVE-----------NSVEGRGLLQKNIEAFELQSIGRILRRDATKL 107
Query: 227 GKDG---PFDYMSVTPPY 241
G G PFD + PPY
Sbjct: 108 GNIGTMLPFDIICADPPY 125
>gi|395791426|ref|ZP_10470884.1| RsmD family RNA methyltransferase [Bartonella alsatica IBS 382]
gi|395408789|gb|EJF75399.1| RsmD family RNA methyltransferase [Bartonella alsatica IBS 382]
Length = 185
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 18/138 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK + L +P G +RP + + F+IL S R LDL++GTG+
Sbjct: 1 MRIVGGKFAGRILFAPVGQSIRPTSDRTRENLFNILASRE--EQFWTNKRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL--DVSSIHTVRVETFLERAEQFV 226
+GIEA+SRG FVE ++E G L ++ ++ + L R +
Sbjct: 59 LGIEALSRGAKAAVFVE-----------NSVEGRGLLQKNIEALELQSIGRILRRDATKL 107
Query: 227 GKDG---PFDYMSVTPPY 241
G G PFD + PPY
Sbjct: 108 GNIGTMLPFDVICADPPY 125
>gi|386725726|ref|YP_006192052.1| RsmD family RNA methyltransferase [Paenibacillus mucilaginosus K02]
gi|384092851|gb|AFH64287.1| RsmD family RNA methyltransferase [Paenibacillus mucilaginosus K02]
Length = 196
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ + L + GM RP + VK A F ++ GR LDL++GTG
Sbjct: 1 MRVISGSAKGRPLKAVPGMGTRPTTDKVKEAVFSMIGP------YFDGGRVLDLFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH---TVRVETFLERAEQF 225
+ IEA+SRG + D V + NL+ GF D + ++ +R L R
Sbjct: 55 LSIEALSRGMEAAVLTDTDKKAVETIH-QNLKAAGFTDRAEVYRNDALRALRALSR---- 109
Query: 226 VGKDGPFDYMSVTPPY 241
++ FD + + PPY
Sbjct: 110 --REAQFDLVFLDPPY 123
>gi|411004911|ref|ZP_11381240.1| RNA methylase [Streptomyces globisporus C-1027]
Length = 194
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 15/149 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F Q+ G +L R DLY+G+G
Sbjct: 1 MTRVIAGSAGGRRLAVPPGTGTRPTSDRAREGLFSTWQALLG---TLEGTRVADLYAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV- 226
+VG+EA+SRG VE DP V V +V ++ + +AEQ V
Sbjct: 58 AVGLEALSRGAVHALLVEADPKAVRTVRD---------NVRTLGLPGADVRTGKAEQIVT 108
Query: 227 --GKDGPFDYMSVTPPYTAVDYEVVEYPL 253
P+D + + PPY D ++ E L
Sbjct: 109 GPAPADPYDIVFLDPPYAVTDDDLREILL 137
>gi|378972565|ref|YP_005221169.1| putative SAM dependent methyltransferase [Treponema pallidum subsp.
pertenue str. SamoaD]
gi|378973631|ref|YP_005222237.1| putative SAM dependent methyltransferase [Treponema pallidum subsp.
pertenue str. Gauthier]
gi|378974695|ref|YP_005223303.1| putative SAM dependent methyltransferase [Treponema pallidum subsp.
pallidum DAL-1]
gi|378981540|ref|YP_005229845.1| putative SAM dependent methyltransferase [Treponema pallidum subsp.
pertenue str. CDC2]
gi|374676888|gb|AEZ57181.1| putative SAM dependent methyltransferase [Treponema pallidum subsp.
pertenue str. SamoaD]
gi|374677957|gb|AEZ58249.1| putative SAM dependent methyltransferase [Treponema pallidum subsp.
pertenue str. CDC2]
gi|374679026|gb|AEZ59317.1| putative SAM dependent methyltransferase [Treponema pallidum subsp.
pertenue str. Gauthier]
gi|374680093|gb|AEZ60383.1| putative SAM dependent methyltransferase [Treponema pallidum subsp.
pallidum DAL-1]
Length = 181
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 83/189 (43%), Gaps = 23/189 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG + L P G +RP M+ ++ + F IL GC +LDL++G+G
Sbjct: 1 MRITGGMLKNHVLRCPDG-PIRPAMDRMRESLFAILGDMRGCS-------FLDLFAGSGV 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE---QF 225
G+EA SRG V FVE + S VL+ N++ L + VE ++ RA F
Sbjct: 53 CGLEAYSRGAYPVVFVERNVRSFS-VLLQNVQVA--LCRLECRCMAVERYIARARTLFHF 109
Query: 226 VGKDGPFDY---------MSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKDRRFGRTH 276
V D PF Y +S +V P + D LV+ R +GR+
Sbjct: 110 VYLDPPFPYRFHAELLQRLSRASLCREGSVVMVHRPREKKLADKIDSLVRTDQRVYGRSV 169
Query: 277 LAIYGPDWA 285
+ Y D A
Sbjct: 170 VDFYRRDKA 178
>gi|373455604|ref|ZP_09547433.1| RsmD family RNA methyltransferase [Dialister succinatiphilus YIT
11850]
gi|371934697|gb|EHO62477.1| RsmD family RNA methyltransferase [Dialister succinatiphilus YIT
11850]
Length = 182
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 13/133 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG A+ L SP G + RP + V+ + F++L + G + + LD+++GTG+
Sbjct: 1 MKIIGGNAKGTLLSSPAGRNTRPTLGRVRESVFNVLANVG-----ILETKVLDIFAGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG E F++ ++ N D S I V + L+ +
Sbjct: 56 MGLEALSRGAGEAVFLDK---ATGAIIRENALRCHVADRSRILKGDVSSSLKTL-----R 107
Query: 229 DGPFDYMSVTPPY 241
FDY+ + PPY
Sbjct: 108 GQKFDYIFMDPPY 120
>gi|345886302|ref|ZP_08837560.1| RsmD family RNA methyltransferase [Bilophila sp. 4_1_30]
gi|345038620|gb|EGW43021.1| RsmD family RNA methyltransferase [Bilophila sp. 4_1_30]
Length = 188
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 66/134 (49%), Gaps = 11/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP V+ A F +L S G + LR LDL++G+GS
Sbjct: 1 MRIIAGALGGRNLKTVEGPGYRPATAKVREAIFSMLSSRGVVWSGLRV---LDLFAGSGS 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE-RAEQFVG 227
+ EA+SRG EV VE +P VV L N+E D + V FL RA Q
Sbjct: 58 LSFEALSRGAQEVCLVEREPKVV-QCLNQNVEALDVSDRCRVAESDVLRFLRGRAYQ--- 113
Query: 228 KDGPFDYMSVTPPY 241
P+D + PPY
Sbjct: 114 ---PYDVIFADPPY 124
>gi|379722944|ref|YP_005315075.1| RsmD family RNA methyltransferase [Paenibacillus mucilaginosus
3016]
gi|378571616|gb|AFC31926.1| RsmD family RNA methyltransferase [Paenibacillus mucilaginosus
3016]
Length = 194
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ + L + GM RP + VK A F ++ GR LDL++GTG
Sbjct: 1 MRVISGSAKGRPLKAVPGMGTRPTTDKVKEAVFSMIGP------YFDGGRVLDLFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH---TVRVETFLERAEQF 225
+ IEA+SRG + D V + NL+ GF D + ++ +R L R
Sbjct: 55 LSIEALSRGMEAAVLTDTDKKAVETIH-QNLKAAGFTDRAEVYRNDALRALRALSR---- 109
Query: 226 VGKDGPFDYMSVTPPY 241
++ FD + + PPY
Sbjct: 110 --REAQFDLVFLDPPY 123
>gi|290968705|ref|ZP_06560243.1| RNA methyltransferase, RsmD family [Megasphaera genomosp. type_1
str. 28L]
gi|335049675|ref|ZP_08542662.1| RNA methyltransferase, RsmD family [Megasphaera sp. UPII 199-6]
gi|290781358|gb|EFD93948.1| RNA methyltransferase, RsmD family [Megasphaera genomosp. type_1
str. 28L]
gi|333762410|gb|EGL39908.1| RNA methyltransferase, RsmD family [Megasphaera sp. UPII 199-6]
Length = 195
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 12/129 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R +KL +P G RP ++ + + F+IL + SLR LD+++GTG+
Sbjct: 12 VRIIAGSVRGRKLKTPSGRLTRPTLDRTRESVFNILAAT-----SLRGASVLDVFAGTGA 66
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF---LDVSSIHTVRVETFLE-RAEQ 224
+G+EA+SRG F++ +L N+E GF +V + R L+ R Q
Sbjct: 67 LGLEALSRGAVSCVFIDQ---ATQELLRKNIEVCGFDAQCEVIAGPARRALARLQGRQFQ 123
Query: 225 FVGKDGPFD 233
F+ D P++
Sbjct: 124 FIFADPPYN 132
>gi|291457130|ref|ZP_06596520.1| RNA methyltransferase, RsmD family [Bifidobacterium breve DSM 20213
= JCM 1192]
gi|417941968|ref|ZP_12585247.1| RNA methyltransferase, RsmD family [Bifidobacterium breve CECT
7263]
gi|291380965|gb|EFE88483.1| RNA methyltransferase, RsmD family [Bifidobacterium breve DSM 20213
= JCM 1192]
gi|376167732|gb|EHS86560.1| RNA methyltransferase, RsmD family [Bifidobacterium breve CECT
7263]
Length = 193
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 20/140 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L +PK RP + K A F L S G L R LDL++GTG+
Sbjct: 1 MRVISGRFKGAALATPK-TGTRPTTDRTKEAIFSHLDSWG----VLGDARVLDLFAGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV------LIPNLEWTGFLDVSSIHTVRVETFLERA 222
+GIEA+SRG E+ VE + + L N W +++ ++A
Sbjct: 56 LGIEALSRGARELVAVESSRPAAALIAKTFAQLQKNRSWDA--------SLKARVLTKKA 107
Query: 223 EQFVGKDG-PFDYMSVTPPY 241
EQ G G PFD + + PPY
Sbjct: 108 EQVTGGFGEPFDVIFIDPPY 127
>gi|408680978|ref|YP_006880805.1| Ribosomal RNA small subunit methyltransferase D [Streptomyces
venezuelae ATCC 10712]
gi|328885307|emb|CCA58546.1| Ribosomal RNA small subunit methyltransferase D [Streptomyces
venezuelae ATCC 10712]
Length = 193
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F ++ G L R DLY+G+G
Sbjct: 1 MTRVIAGTAGGRRLAVPPGNGTRPTSDRAREGLFSTWEAFHG----LDGARVADLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV- 226
+VGIEA+SRG + VE +P + ++ +I E +AEQ V
Sbjct: 57 AVGIEALSRGAAHALLVEAEPRAAKTIR---------ENIRTIGLPGAELRTGKAEQIVT 107
Query: 227 --GKDGPFDYMSVTPPYTAVDYEVVEYPL 253
P+D + + PPY D E+ E L
Sbjct: 108 GPAPAAPYDLVFLDPPYAVSDEELREILL 136
>gi|431805575|ref|YP_007232476.1| Ribosomal RNA small subunit methyltransferase D [Liberibacter
crescens BT-1]
gi|430799550|gb|AGA64221.1| Ribosomal RNA small subunit methyltransferase D [Liberibacter
crescens BT-1]
Length = 187
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 24/141 (17%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L + +RP + A F+IL P +L +D+++G GS
Sbjct: 1 MRIVGGKFRGRILSGSESNHIRPTRSQTREALFNILSHV--YPEALNATYMVDMFAGVGS 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG--------FLDVSSIHTVRVETFLE 220
+G+EA+SRGC V F++ + + NV+ N+ G +V +I +R+
Sbjct: 59 IGLEALSRGCRYVFFIDNNIKSL-NVIRKNISVLGVEEHTKVLLWNVVNIQKLRIIK--- 114
Query: 221 RAEQFVGKDGPFDYMSVTPPY 241
PF ++ + PPY
Sbjct: 115 ----------PFQFIFLDPPY 125
>gi|33240591|ref|NP_875533.1| N-6 adenine-specific DNA methylase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33238119|gb|AAQ00186.1| N6-adenine-specific methylase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 200
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 72/146 (49%), Gaps = 24/146 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GG+ KL SP G VRP V+ A +IL+ + WLDLYSG+G+
Sbjct: 5 LRLIGGR----KLKSPIGDLVRPTTARVREALMNILKE------DIENSNWLDLYSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVV----SNVLIPNLEWTGFLDVSSIHTVRVETFLERA-- 222
+G EAI RG + V +E + + +N+ + + + V I++ V FL+
Sbjct: 55 IGCEAIQRGANTVVAIEQNKKIYQLCENNLSVVSKANKKEVSVQVINS-DVNKFLKSGFK 113
Query: 223 -------EQFVGKDGPFDYMSVTPPY 241
++ KD FDY+ + PPY
Sbjct: 114 NYIQKSPKKLHSKDFYFDYIYIDPPY 139
>gi|323142410|ref|ZP_08077236.1| RNA methyltransferase, RsmD family [Phascolarctobacterium
succinatutens YIT 12067]
gi|322413103|gb|EFY03996.1| RNA methyltransferase, RsmD family [Phascolarctobacterium
succinatutens YIT 12067]
Length = 198
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 18/143 (12%)
Query: 104 TTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLY 163
T + ++++ GKAR +L PK DVRP + VK + F+I+ S + LDL+
Sbjct: 9 TEEQYMRIITGKARGLQLTVPKTYDVRPTADRVKESVFNIIGS------KIIGAEVLDLF 62
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDP----WVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
+GTG++G+E+ SRG + V F++ V SN++ E + S V
Sbjct: 63 AGTGNLGLESWSRGAAAVTFIDASKESLRLVRSNIVKCRAEADCRVLQGSAPAV------ 116
Query: 220 ERAEQFVGKDGPFDYMSVTPPYT 242
AE+ FD+ PPY
Sbjct: 117 --AERLAAAGELFDFAFCDPPYN 137
>gi|342214802|ref|ZP_08707475.1| RNA methyltransferase, RsmD family [Veillonella sp. oral taxon 780
str. F0422]
gi|341590625|gb|EGS33862.1| RNA methyltransferase, RsmD family [Veillonella sp. oral taxon 780
str. F0422]
Length = 181
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 11/141 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ + +PKGMD RP + V+ + +++QS G + LDL+SGTG+
Sbjct: 1 MRIISGTAKGHTIQAPKGMDTRPTQDRVRESICNVIQSRRG----FFEAQVLDLFSGTGA 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE----Q 224
+ IE++SRG S H + +D V + + N D I +E+ L R + Q
Sbjct: 57 LAIESLSRGAS--HAIAVDTRTV-DCIQSNSRHCKVDDRLEIMKCTMESALTRLQGKQFQ 113
Query: 225 FVGKDGPFDYMSVTPPYTAVD 245
+ D P++ V VD
Sbjct: 114 LIFSDPPYEKGYVQKTLDLVD 134
>gi|414159198|ref|ZP_11415488.1| RsmD family RNA methyltransferase [Streptococcus sp. F0441]
gi|410868195|gb|EKS16163.1| RsmD family RNA methyltransferase [Streptococcus sp. F0441]
Length = 179
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 13/134 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKMTRPTSDKVRGAIFNMIGP------YFDGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRK-AQAIIAENIQMTK--EVSKFQLLKMEA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYT 242
GPFD + + PPY
Sbjct: 108 KGPFDLVFLDPPYA 121
>gi|395792004|ref|ZP_10471443.1| RsmD family RNA methyltransferase [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|423714054|ref|ZP_17688313.1| RsmD family RNA methyltransferase [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395421201|gb|EJF87457.1| RsmD family RNA methyltransferase [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395432923|gb|EJF98897.1| RsmD family RNA methyltransferase [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 185
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 18/138 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK + L +P G +RP + + + F+IL S R LDL++GTG+
Sbjct: 1 MRIVGGKFAGRVLFAPVGQSIRPTSDRTRESLFNILASRE--EQFWTNKRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL--DVSSIHTVRVETFLERAEQFV 226
+GIEA+SRG FVE ++E G L ++ + + L R +
Sbjct: 59 LGIEALSRGAKAAVFVE-----------NSVEGRGLLQKNIETFELQSIGRILRRDATKL 107
Query: 227 GKDG---PFDYMSVTPPY 241
G G PFD + PPY
Sbjct: 108 GNIGTMLPFDVICADPPY 125
>gi|395764502|ref|ZP_10445129.1| RsmD family RNA methyltransferase [Bartonella sp. DB5-6]
gi|395414771|gb|EJF81211.1| RsmD family RNA methyltransferase [Bartonella sp. DB5-6]
Length = 185
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 18/138 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK + L +P G +RP + + + F+IL S R LDL++GTG+
Sbjct: 1 MRIVGGKFAGRVLFAPVGQSIRPTSDRTRESLFNILASRE--EQFWTNKRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL--DVSSIHTVRVETFLERAEQFV 226
+GIEA+SRG FVE ++E G L ++ + + L R +
Sbjct: 59 LGIEALSRGAKAAVFVE-----------NSVEGRGLLQKNIEAFELQAIGRILRRDATKL 107
Query: 227 GKDG---PFDYMSVTPPY 241
G G PFD + PPY
Sbjct: 108 GNIGTMLPFDIICADPPY 125
>gi|406576776|ref|ZP_11052401.1| methyltransferase, putative [Streptococcus sp. GMD6S]
gi|419817049|ref|ZP_14341219.1| methyltransferase, putative [Streptococcus sp. GMD4S]
gi|404460741|gb|EKA06985.1| methyltransferase, putative [Streptococcus sp. GMD6S]
gi|404466435|gb|EKA11771.1| methyltransferase, putative [Streptococcus sp. GMD4S]
Length = 179
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 13/134 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T + S +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRK-AQAIIAENIQMTK--EASKFQLLKMEA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYT 242
GPFD + + PPY
Sbjct: 108 KGPFDLVFLDPPYA 121
>gi|322375837|ref|ZP_08050348.1| RNA methyltransferase, RsmD family [Streptococcus sp. C300]
gi|321279105|gb|EFX56147.1| RNA methyltransferase, RsmD family [Streptococcus sp. C300]
Length = 179
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 13/134 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T + S +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRK-AQAIIAENIQMTK--EASKFQLLKMEA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYT 242
GPFD + + PPY
Sbjct: 108 KGPFDLVFLDPPYA 121
>gi|312793405|ref|YP_004026328.1| methyltransferase [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312180545|gb|ADQ40715.1| methyltransferase [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 184
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 31/190 (16%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + ++L S +RP + VK A F+++ P D ++GTG+
Sbjct: 1 MRVISGQQKGRRLKSANIEGLRPTSDRVKEAIFNMI-----APFLNEKLIVADFFAGTGN 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIE +SRG EV FVE D + N++ NL+ L + I V FL+ K
Sbjct: 56 VGIEFLSRGVKEVTFVEKDMRCI-NLIKENLKNLDLLKRARIIKGDVLKFLK------SK 108
Query: 229 DGP-FDYMSVTPPYTAVDY--EVVEYPLRTDMLDTCGCLVK---------------IKDR 270
+ P FD + + PPY + DY E + + + ++ G ++ +++R
Sbjct: 109 NCPVFDIIFLDPPYRS-DYAKECISEIIENNRINENGLIIVESNLEFRYEDENLSILRER 167
Query: 271 RFGRTHLAIY 280
+G T + I+
Sbjct: 168 EYGDTKITIF 177
>gi|225022636|ref|ZP_03711828.1| hypothetical protein CORMATOL_02679 [Corynebacterium matruchotii
ATCC 33806]
gi|224944544|gb|EEG25753.1| hypothetical protein CORMATOL_02679 [Corynebacterium matruchotii
ATCC 33806]
Length = 195
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 36/200 (18%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G+AR +KL P RP + K F LQ G + LDL++G+G
Sbjct: 3 MTRIISGEARGRKLQVPS-EGTRPTSDRAKEGLFSSLQVRFG----FQDAVVLDLFAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++G+EA SRG +EV VE DP + V+ N E G +V + + ++
Sbjct: 58 ALGLEAASRGAAEVVLVESDPHTCA-VIRRNAEAVGHPNVQVMQMAASAYVAQAPRKY-- 114
Query: 228 KDGPFDYMSVTPPYTAVDYEVVEY--PLRTDMLDTCGCLV-------------------- 265
FD + PPY VVE LR ++D +V
Sbjct: 115 ----FDMVLADPPYDLAPETVVEMLEALRPLLVDGAAVVVERHRDSPHTEWPAGYTPTPQ 170
Query: 266 KIKDRRFG--RTHLAIYGPD 283
K+K R FG R +A++ D
Sbjct: 171 KLKKRTFGIARMDMAVFSAD 190
>gi|317495523|ref|ZP_07953891.1| RsmD family RNA methyltransferase [Gemella morbillorum M424]
gi|316914337|gb|EFV35815.1| RsmD family RNA methyltransferase [Gemella morbillorum M424]
Length = 183
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 30/142 (21%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + KL S GM+ RP + +K F++L GR LDL+ GTG+
Sbjct: 1 MRVIAGKYKSIKLNSVDGMNTRPTTDKIKENLFNMLHC---------DGRILDLFGGTGA 51
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV--------ETFLE 220
+GIE++SRG F++ + + S+I R+ +
Sbjct: 52 LGIESLSRGAEHAVFIDGSSSAIKTIH------------SNIEKCRIPKTNYDVYRNDYK 99
Query: 221 RAEQFVG-KDGPFDYMSVTPPY 241
RA + +G K+ FD + + PPY
Sbjct: 100 RALKILGKKEEKFDLIFLDPPY 121
>gi|171060173|ref|YP_001792522.1| methyltransferase [Leptothrix cholodnii SP-6]
gi|170777618|gb|ACB35757.1| methyltransferase [Leptothrix cholodnii SP-6]
Length = 220
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 18/175 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++GG+ +R KL +RP + V+ F+ L QS G LD ++G+G
Sbjct: 25 VRLIGGRWKRSKLRFTARPGLRPTPDRVRETLFNWLGQSLDGWSV-------LDAFAGSG 77
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT-GFLDVSSIHTVRVETFLERAEQFV 226
++G EA SRG S V +E+D VL+ L+ T L ++ +R + EQ
Sbjct: 78 ALGFEAASRGASRVRMLELD-----AVLVHELQATRDRLGADTVDVLRTDALAWMGEQ-- 130
Query: 227 GKDGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYG 281
K+ FD + + PP++ +D +L G + DR FG LA G
Sbjct: 131 -KEASFDLILLDPPFS-LDLFAAALAQAVHLLRPDGWIYLEADRAFGEEALAGMG 183
>gi|319408054|emb|CBI81708.1| putative enzyme [Bartonella schoenbuchensis R1]
Length = 185
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 18/138 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK + L SP G +RP + ++ + F+IL S + R R LDL++GTG+
Sbjct: 1 MRIIGGKFAGRILSSPLGQSIRPTSDRIRESLFNILVSREEQFWANR--RVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL--DVSSIHTVRVETFLERAEQFV 226
+GIEA+SRG FVE ++E G + ++ S + L R +
Sbjct: 59 LGIEALSRGAKAAVFVE-----------NSVEGRGLIQKNIESFGLQAIGRILRRDATKL 107
Query: 227 GKDG---PFDYMSVTPPY 241
G G PFD + PPY
Sbjct: 108 GNIGTMLPFDVVFADPPY 125
>gi|293372275|ref|ZP_06618660.1| RNA methyltransferase, RsmD family [Bacteroides ovatus SD CMC 3f]
gi|336415612|ref|ZP_08595951.1| RsmD family RNA methyltransferase [Bacteroides ovatus 3_8_47FAA]
gi|423294724|ref|ZP_17272851.1| RsmD family RNA methyltransferase [Bacteroides ovatus CL03T12C18]
gi|292632717|gb|EFF51310.1| RNA methyltransferase, RsmD family [Bacteroides ovatus SD CMC 3f]
gi|335940491|gb|EGN02358.1| RsmD family RNA methyltransferase [Bacteroides ovatus 3_8_47FAA]
gi|392675915|gb|EIY69356.1| RsmD family RNA methyltransferase [Bacteroides ovatus CL03T12C18]
Length = 177
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 16/160 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G +R++ P+ RP + K F++L + + LDL++GTGS
Sbjct: 1 MRVISGIYKRRRFDVPRTFKARPTTDFAKENLFNVLNNYIDFEEGITA---LDLFAGTGS 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IE +SRGC V +E DP S + E + +R + F +F+ K
Sbjct: 58 ISIELVSRGCDHVISIEKDPAHHSFICKIMKE----VQTDKCLPIRGDVF-----KFI-K 107
Query: 229 DG--PFDYMSVTPPYTAVDYEVV-EYPLRTDMLDTCGCLV 265
+G FD++ PPY + E + E + ++L G LV
Sbjct: 108 NGREQFDFIFADPPYALKELETIPELIFQNNLLKEGGLLV 147
>gi|423512027|ref|ZP_17488558.1| RsmD family RNA methyltransferase [Bacillus cereus HuA2-1]
gi|402450288|gb|EJV82122.1| RsmD family RNA methyltransferase [Bacillus cereus HuA2-1]
Length = 188
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMI------GPYYDGGIALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQFVG 227
+GIEAISRG +V FV+ D + V+ NLE + + ++ ERA + +
Sbjct: 55 LGIEAISRGIDKVIFVDRDSKAIK-VIHQNLESCRIQEQAEVY----RNDAERAVKALIK 109
Query: 228 KDGPFDYMSVTPPY---------TAVDYE---------VVEYPLRTDMLDTCGCLVKIKD 269
++ FD + + PPY + +D + E+ + D+ G LVK++
Sbjct: 110 REISFDLILIDPPYKGQKIVSLISVIDQHGLLNKDGIIMAEHGDDVVLPDSIGELVKVRA 169
Query: 270 RRFGRTHLAIY 280
+G T ++IY
Sbjct: 170 ENYGITAISIY 180
>gi|238924039|ref|YP_002937555.1| site-specific DNA-methyltransferase (adenine-specific) [Eubacterium
rectale ATCC 33656]
gi|238875714|gb|ACR75421.1| site-specific DNA-methyltransferase (adenine-specific) [Eubacterium
rectale ATCC 33656]
gi|291524775|emb|CBK90362.1| RNA methyltransferase, RsmD family [Eubacterium rectale DSM 17629]
gi|291528904|emb|CBK94490.1| RNA methyltransferase, RsmD family [Eubacterium rectale M104/1]
Length = 183
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 13/135 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW-LDLYSGTG 167
++++ G AR L + +G D RP + K F+++Q PG + LDL++G+G
Sbjct: 1 MRIIAGTARSLPLKTIEGKDTRPTTDKTKETLFNVMQFD-------VPGAYFLDLFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+G+EA+SRG + FVE + ++ + N+ +T F VS + T + E G
Sbjct: 54 QIGLEALSRGAAYAVFVE-NSRKAASCIEDNIHFTKFDKVSRLMMTDAVTAVRTLE---G 109
Query: 228 KDGPFDYMSVTPPYT 242
K FD + + PPY
Sbjct: 110 K-YKFDIVFMDPPYN 123
>gi|265755931|ref|ZP_06090398.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|263234009|gb|EEZ19610.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 186
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 22/147 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-----AGGCPASLRPGRWLDLY 163
++V+ G +R++ P RP + K F++L + G A LDL+
Sbjct: 1 MRVISGIYKRRRFDVPHTFKARPTTDFAKENLFNVLSNNYFDFENGVTA-------LDLF 53
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+GTGS+ IE +SRGC V VE DP +S + E + +R + F
Sbjct: 54 AGTGSISIELVSRGCDRVISVEKDPQHLSFISQVMRE----VKTDKCFPIRADVF----- 104
Query: 224 QFVGK-DGPFDYMSVTPPYTAVDYEVV 249
+F+ K + FD++ PPY D E +
Sbjct: 105 RFIDKCNEQFDFIFADPPYALKDLESI 131
>gi|451940231|ref|YP_007460869.1| hypothetical protein BAnh1_01890 [Bartonella australis Aust/NH1]
gi|451899618|gb|AGF74081.1| hypothetical protein BAnh1_01890 [Bartonella australis Aust/NH1]
Length = 199
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 68/136 (50%), Gaps = 14/136 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L +P G +RP + ++ + F+IL A R LDL++GTG+
Sbjct: 13 VRIISGKFAKRVLSTPTGQSIRPTSDRMRESLFNIL--ANREEQFWANKRILDLFAGTGA 70
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FVE + ++ N+E G V I L R +GK
Sbjct: 71 LGIEALSRGAKAAVFVE-NSVEGRGLIQKNIESFGLQGVGRI--------LRRDATKLGK 121
Query: 229 DG---PFDYMSVTPPY 241
G PFD + PPY
Sbjct: 122 IGTMLPFDVICADPPY 137
>gi|390940251|ref|YP_006403988.1| RsmD family RNA methyltransferase [Sulfurospirillum barnesii SES-3]
gi|390193358|gb|AFL68413.1| RNA methyltransferase, RsmD family [Sulfurospirillum barnesii
SES-3]
Length = 191
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 81/192 (42%), Gaps = 33/192 (17%)
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
++ GK + KKL+ P R ++KG+ FD LQ + +++++ G+GS+G
Sbjct: 10 IVAGKYKGKKLMLPSLESTRSTKAILKGSLFDTLQY------DIVDEVFVEVFGGSGSMG 63
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
+EA+SRG +F+E D +L N E + +++H F F K
Sbjct: 64 LEALSRGAKHAYFIEKDKAAF-GILKRNCEAIDTMHTTALHGDSFIVFPSLISTFTCK-- 120
Query: 231 PFDYMSVTPPYTAVD-----YE-----------------VVEYPLRTDMLDTCGCLVKIK 268
Y PP++ D YE +E+ ++ G + K
Sbjct: 121 --AYFYFDPPFSIRDGMENVYENVLKLIAAIPQEKAHFIAIEHMSELELPQNIGLFTRQK 178
Query: 269 DRRFGRTHLAIY 280
++FG++ L+ Y
Sbjct: 179 TKKFGKSSLSYY 190
>gi|328955649|ref|YP_004372982.1| methyltransferase [Coriobacterium glomerans PW2]
gi|328455973|gb|AEB07167.1| methyltransferase [Coriobacterium glomerans PW2]
Length = 203
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 70/137 (51%), Gaps = 12/137 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSA--GGCPASLRPGRWLDLYSG 165
++V+GG+ R ++L+ P G DV RP + V+ A ++++A GG + R LD + G
Sbjct: 1 MRVVGGRWRGRRLIEPVGRDVTRPTQDRVREACASMIEAALEGGIAGA----RVLDAFGG 56
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQ 224
TG++GIE +SRG S FV+ D S ++ NL G V S+ + R E
Sbjct: 57 TGALGIEMLSRGASHATFVDSDRQAAS-LIRKNLASLGADPAVWSVLSADAPALAARGEV 115
Query: 225 FVGKDGPFDYMSVTPPY 241
PFD + PPY
Sbjct: 116 ---PGSPFDLVLADPPY 129
>gi|73662973|ref|YP_301754.1| N6-adenine-specific methylase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72495488|dbj|BAE18809.1| putative N6-adenine-specific methylase [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 180
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 15/159 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVISGIHKSKALESLEGRNTRPTMDKVKEGIFNSLHEVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG ++ FV+ + V V+ NL+ + ++ + L + +
Sbjct: 53 LGIEALSRGIDQMIFVDQNFKAVK-VIKANLKNLNIDTQAEVYKNNADRAL---KALAKR 108
Query: 229 DGPFDYMSVTPPYTA--VDYEVVEYPLRTDMLDTCGCLV 265
+ FD + + PPY +D E +E + ++L G +V
Sbjct: 109 EIQFDVIFLDPPYEKGLID-EALEGIAKFNLLKENGIIV 146
>gi|13476820|ref|NP_108389.1| hypothetical protein mlr8254 [Mesorhizobium loti MAFF303099]
gi|14027581|dbj|BAB53850.1| mlr8254 [Mesorhizobium loti MAFF303099]
Length = 184
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 8/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +P+G +RP + + A F++L L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLATPRGSAIRPTTDRTREAVFNVLAHR--FAEQLDGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG S F+E + ++ N+E G + I R T L A G
Sbjct: 59 LGLEALSRGASYGVFIE-ESAEGRGLIRDNVEAFGLTGRTKIFR-RDATGLGEA----GT 112
Query: 229 DGPFDYMSVTPPY 241
PF + PPY
Sbjct: 113 LAPFGLVFADPPY 125
>gi|421308175|ref|ZP_15758815.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA60132]
gi|395906349|gb|EJH17248.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA60132]
Length = 179
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 13/134 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R+ L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGRRPLKTLEGKTTRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +V ++++ ERA + V
Sbjct: 55 LSIEAVSRGMSSAVLVERDRK-AQTIVAENIQMTK--EVGKFQLLKMDA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYT 242
G FD + + PPYT
Sbjct: 108 SGGFDLVFLDPPYT 121
>gi|358465588|ref|ZP_09175524.1| RNA methyltransferase, RsmD family [Streptococcus sp. oral taxon
058 str. F0407]
gi|357065397|gb|EHI75608.1| RNA methyltransferase, RsmD family [Streptococcus sp. oral taxon
058 str. F0407]
Length = 179
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 13/134 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D V+ N++ T +VS +++E +RA + VG
Sbjct: 55 LSIEAVSRGMSSAVLVERDRK-AQAVIAENIQMTK--EVSKFQLLKMEA--DRALEQVG- 108
Query: 229 DGPFDYMSVTPPYT 242
G FD + + PPY
Sbjct: 109 -GTFDLVFLDPPYA 121
>gi|51892576|ref|YP_075267.1| RNA methylase [Symbiobacterium thermophilum IAM 14863]
gi|51856265|dbj|BAD40423.1| putative RNA methylase [Symbiobacterium thermophilum IAM 14863]
Length = 192
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 28/193 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ + L + K VRP + VK + F+I+ S + +LDL++G+G+
Sbjct: 1 MRVITGSAKGRPLKTVKSRAVRPTSDRVKESLFNIIGS------RVVDADFLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIEA+SRG FVE+ + V+ NL TG + + L +
Sbjct: 55 VGIEALSRGARACVFVELQTAHL-KVVADNLRTTGLAGRAELIRRDARAAL---VDLAHR 110
Query: 229 DGPFDYMSVTPPY---------TAVD---------YEVVEYPLRTDMLDTCGCLVKIKDR 270
FD++ V PPY +D + + E+ + + G L + ++
Sbjct: 111 GRRFDFIFVDPPYGQDLVPAVLALIDGHGVLAEDGWVICEHHAKDPVPAAAGGLYRFREV 170
Query: 271 RFGRTHLAIYGPD 283
FG T L+IY D
Sbjct: 171 LFGETMLSIYRAD 183
>gi|404253674|ref|ZP_10957642.1| methyltransferase [Sphingomonas sp. PAMC 26621]
Length = 178
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 17/135 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R + L++PKG RP + V+ A F +L S G L DL++G+G+
Sbjct: 1 MRIIAGEWRGRPLVAPKGDATRPTADRVREALFSMLSSRLGSFEDLSVA---DLFAGSGA 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEW--TGFLDVSSIHTVRVETFLERAEQFV 226
+G+EA+SRG + FVE D P L+ T +S+ VR ++ +
Sbjct: 58 LGLEALSRGAASCIFVEQDK--------PALDALRTNIAKLSAKADVRAQSVMALGHAV- 108
Query: 227 GKDGPFDYMSVTPPY 241
P D + + PPY
Sbjct: 109 ---APLDLILMDPPY 120
>gi|332670947|ref|YP_004453955.1| methyltransferase [Cellulomonas fimi ATCC 484]
gi|332339985|gb|AEE46568.1| methyltransferase [Cellulomonas fimi ATCC 484]
Length = 185
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 87/188 (46%), Gaps = 24/188 (12%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G A + L P+ RP E V+ A F L+ G + R LDLY+G+G
Sbjct: 1 MTRIVAGTAGGRTLQVPR-RGTRPTSERVREALFSRLEHLG----VVDDARVLDLYAGSG 55
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++G+EA SRG V VE ++V N+ G DV+ + ERAE+FV
Sbjct: 56 ALGLEAASRGARAVTLVE-SAREAADVCRRNVATLGLRDVTVVA--------ERAERFVQ 106
Query: 228 KD--GPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVK---IKDRRFGRTHLAIYGP 282
+ P+D + V PP Y+V E L + D G + + R R+ ++
Sbjct: 107 RRPVAPWDLVLVDPP-----YDVAEPDLAAVLADVAGDVADDGLLAVERSSRSPEPVWPA 161
Query: 283 DWAQKKRK 290
WA +R+
Sbjct: 162 GWAGVERR 169
>gi|313885896|ref|ZP_07819636.1| RNA methyltransferase, RsmD family [Porphyromonas asaccharolytica
PR426713P-I]
gi|312924651|gb|EFR35420.1| RNA methyltransferase, RsmD family [Porphyromonas asaccharolytica
PR426713P-I]
Length = 186
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 10/136 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R++L PKG+ +RP ++ K A F+ L + R LDL++G GS
Sbjct: 1 MRIIAGKYGRRRLSPPKGLTLRPTTDIAKEALFNSLSAQYDVEGV----RVLDLFAGIGS 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +E +SRG + V +E P + + LD + T ++ EQ++ +
Sbjct: 57 ISLEFVSRGAASVTSIEKHPKHAAFI----RSAADTLDKEILSTKQLLVLNRSVEQYLRQ 112
Query: 229 -DG-PFDYMSVTPPYT 242
DG P+D + PPY
Sbjct: 113 YDGEPYDLIFADPPYN 128
>gi|261416930|ref|YP_003250613.1| methyltransferase [Fibrobacter succinogenes subsp. succinogenes
S85]
gi|385791743|ref|YP_005822866.1| putative methyltransferase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261373386|gb|ACX76131.1| methyltransferase [Fibrobacter succinogenes subsp. succinogenes
S85]
gi|302327156|gb|ADL26357.1| putative methyltransferase [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 180
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG R + + SP M RP + A F+ILQ G R LDL++G+G
Sbjct: 3 IRITGGLLRGRNIESPDTMKTRPTASRTREALFNILQGVDGF-------RVLDLFAGSGI 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + V VE+ + + +++ S + L ++ V
Sbjct: 56 MGLEALSRGAASVTAVEL---ARPQARMIERSYKS-VNMDSKLKLLETNVLTLKKEIVCA 111
Query: 229 DGPFDYMSVTPPYTAVDY 246
DG FD + PP+ +DY
Sbjct: 112 DGGFDLIYADPPFKDMDY 129
>gi|227893365|ref|ZP_04011170.1| possible rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus
ultunensis DSM 16047]
gi|227864780|gb|EEJ72201.1| possible rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus
ultunensis DSM 16047]
Length = 183
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 37/197 (18%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L + K RP + VK + F+ L G LDLY+G+G+
Sbjct: 1 MRIISGKYAKRNLFTLKSNRTRPTSDKVKESLFNSLGQF------FHGGNVLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT---GFLDVSSIH-TVRVETFLERAEQ 224
+GIEA+SRG + V+++ S ++ N+ T DV ++ +V ++ F E E+
Sbjct: 55 LGIEAVSRGYDKASLVDINHAACS-IIKKNVALTKEENRFDVYNMRSSVALKLFAENGER 113
Query: 225 FVGKDGPFDYMSVTPPYT--AVDYEVVEYPLRTDMLDTCGCLVK---------------- 266
FD + + PPY + ++++ + D+L+ +V
Sbjct: 114 -------FDLVFLDPPYAKEKIAKDMMQMN-KLDLLNENAIVVAETDDHTELGKITGFSL 165
Query: 267 IKDRRFGRTHLAIYGPD 283
IKD G+T + IY D
Sbjct: 166 IKDHHLGKTIVRIYRKD 182
>gi|452953044|gb|EME58467.1| methyltransferase [Amycolatopsis decaplanina DSM 44594]
Length = 184
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 70/141 (49%), Gaps = 20/141 (14%)
Query: 108 LLQVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ G A ++L + PKG RP E V+ A F+ L+ AG LR + LDLY+G+
Sbjct: 1 MTRIVAGTAGGRRLKVPPKG--TRPTSERVREALFNALEVAG----ELRGAQVLDLYAGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G++G+EA+SRG S FVE D V VL N+ G V E V
Sbjct: 55 GALGLEALSRGASGALFVESDRRAV-EVLKGNVAALGLGGAVRAGAV---------ESVV 104
Query: 227 GKDGP--FDYMSVTPPYTAVD 245
P FD + PPY AVD
Sbjct: 105 AAPAPETFDIVLADPPY-AVD 124
>gi|387927153|ref|ZP_10129832.1| methyltransferase [Bacillus methanolicus PB1]
gi|387589297|gb|EIJ81617.1| methyltransferase [Bacillus methanolicus PB1]
Length = 186
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 82/159 (51%), Gaps = 13/159 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + + L + G RP + VK A F+I+ G LDL++G+G
Sbjct: 1 MRVVSGSCKGRILKAVLGSSTRPTTDKVKEAIFNII------GPYFAGGLGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG ++V FV+ D + ++ N++ G + + ++ ERA + + K
Sbjct: 55 LGIEALSRGLNKVIFVDKDKKAI-QIIHENIKNCGLEEHAEVY----RNDAERALKAIIK 109
Query: 229 DG-PFDYMSVTPPYTAVDY-EVVEYPLRTDMLDTCGCLV 265
G FD++ + PPY +++E + ++L G ++
Sbjct: 110 RGLVFDFIFLDPPYKKQQISKILETIDKENLLTESGAII 148
>gi|393721602|ref|ZP_10341529.1| methyltransferase [Sphingomonas echinoides ATCC 14820]
Length = 182
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 9/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R + +++PKG RP + V+ A F +L S G L DL++G+G+
Sbjct: 1 MRIIAGKWRGRPIVAPKGDATRPTADRVREALFSMLASRLGSFEDLAVA---DLFAGSGA 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + FVE D + + + G ++ + VR ++ L
Sbjct: 58 LGLEALSRGAASCIFVEQDKAALDALRTNITKLGGAKEIGA--DVRAQSVLALGHAVA-- 113
Query: 229 DGPFDYMSVTPPY 241
P D + + PPY
Sbjct: 114 --PLDLIVMDPPY 124
>gi|393724293|ref|ZP_10344220.1| methyltransferase [Sphingomonas sp. PAMC 26605]
Length = 182
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 9/133 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R + L++PKG RP + V+ A F +L S G L D ++G+G+
Sbjct: 1 MRIIAGKWRGRPLVAPKGEATRPTADRVREALFSMLASRVGSFEELAVA---DFFAGSGA 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FVE D + + + + G ++ + VR ++ L
Sbjct: 58 LGIEALSRGAASCIFVEQDKPALDALRVNLTKLGGAKEIGA--DVRAQSVLALGHA---- 111
Query: 229 DGPFDYMSVTPPY 241
P D + + PPY
Sbjct: 112 AKPLDLIVMDPPY 124
>gi|423615738|ref|ZP_17591572.1| RsmD family RNA methyltransferase [Bacillus cereus VD115]
gi|401260275|gb|EJR66448.1| RsmD family RNA methyltransferase [Bacillus cereus VD115]
Length = 188
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 34/193 (17%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMI------GPYFDGGTALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQFVG 227
+GIEAISRG + FV+ D + V+ NLE + + ++ ERA + +
Sbjct: 55 LGIEAISRGIEKAIFVDRDSKAIK-VIHQNLESCRVHEQAEVY----RNDAERAVKALIK 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVVEYP--------LRTDML------------DTCGCLVKI 267
++ FD + + PPY D ++V L D L D+ G LVK+
Sbjct: 110 REMSFDLILIDPPYK--DQKIVSLISVMDQHGLLHRDGLIMSEHGNDVVLPDSIGNLVKV 167
Query: 268 KDRRFGRTHLAIY 280
+ +G T ++IY
Sbjct: 168 RAENYGITAISIY 180
>gi|237719230|ref|ZP_04549711.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|262408275|ref|ZP_06084822.1| RsmD family RNA methyltransferase [Bacteroides sp. 2_1_22]
gi|294645382|ref|ZP_06723091.1| RNA methyltransferase, RsmD family [Bacteroides ovatus SD CC 2a]
gi|294806158|ref|ZP_06765010.1| RNA methyltransferase, RsmD family [Bacteroides xylanisolvens SD CC
1b]
gi|299148289|ref|ZP_07041351.1| putative methyltransferase [Bacteroides sp. 3_1_23]
gi|336403908|ref|ZP_08584615.1| hypothetical protein HMPREF0127_01928 [Bacteroides sp. 1_1_30]
gi|345510276|ref|ZP_08789844.1| hypothetical protein BSAG_03111 [Bacteroides sp. D1]
gi|423212102|ref|ZP_17198631.1| RsmD family RNA methyltransferase [Bacteroides xylanisolvens
CL03T12C04]
gi|423292533|ref|ZP_17271111.1| RsmD family RNA methyltransferase [Bacteroides ovatus CL02T12C04]
gi|229445609|gb|EEO51400.1| hypothetical protein BSAG_03111 [Bacteroides sp. D1]
gi|229451609|gb|EEO57400.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|262353827|gb|EEZ02920.1| RsmD family RNA methyltransferase [Bacteroides sp. 2_1_22]
gi|292639274|gb|EFF57583.1| RNA methyltransferase, RsmD family [Bacteroides ovatus SD CC 2a]
gi|294446672|gb|EFG15287.1| RNA methyltransferase, RsmD family [Bacteroides xylanisolvens SD CC
1b]
gi|298513050|gb|EFI36937.1| putative methyltransferase [Bacteroides sp. 3_1_23]
gi|335944581|gb|EGN06400.1| hypothetical protein HMPREF0127_01928 [Bacteroides sp. 1_1_30]
gi|392661614|gb|EIY55194.1| RsmD family RNA methyltransferase [Bacteroides ovatus CL02T12C04]
gi|392694990|gb|EIY88215.1| RsmD family RNA methyltransferase [Bacteroides xylanisolvens
CL03T12C04]
Length = 177
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 16/160 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G +R++ P+ RP + K F++L + + LDL++GTGS
Sbjct: 1 MRVISGIYKRRRFDVPRTFKARPTTDFAKENLFNVLNNYIDFEEGITA---LDLFAGTGS 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IE +SRGC V +E DP S + E + +R + F +F+ K
Sbjct: 58 ISIELVSRGCDRVISIEKDPAHHSFICKIMKE----VQTDKCLPIRGDVF-----KFI-K 107
Query: 229 DG--PFDYMSVTPPYTAVDYEVV-EYPLRTDMLDTCGCLV 265
+G FD++ PPY + E + E + ++L G LV
Sbjct: 108 NGREQFDFIFADPPYALKELETIPELIFQNNLLKEGGLLV 147
>gi|228992665|ref|ZP_04152591.1| Methyltransferase [Bacillus pseudomycoides DSM 12442]
gi|228998711|ref|ZP_04158298.1| Methyltransferase [Bacillus mycoides Rock3-17]
gi|229006213|ref|ZP_04163899.1| Methyltransferase [Bacillus mycoides Rock1-4]
gi|228755054|gb|EEM04413.1| Methyltransferase [Bacillus mycoides Rock1-4]
gi|228761179|gb|EEM10138.1| Methyltransferase [Bacillus mycoides Rock3-17]
gi|228766997|gb|EEM15634.1| Methyltransferase [Bacillus pseudomycoides DSM 12442]
Length = 188
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 28/190 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK A F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKEAIFNMIGP------YFEGGIALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FV+ D V V+ NLE D + ++ E L + + +
Sbjct: 55 LGIEALSRGVDKAIFVDRDNKAVK-VIHQNLESCRVHDQAEVYRNDAERAL---KALIKR 110
Query: 229 DGPFDYMSVTPPY---------TAVDYE---------VVEYPLRTDMLDTCGCLVKIKDR 270
+ FD + + PPY + +D + E+ + + G LVK++
Sbjct: 111 ELSFDLILLDPPYKDQKIISLISVMDQHGLLNEDGLIMAEHGDDVVLPEAIGGLVKVRAE 170
Query: 271 RFGRTHLAIY 280
+G T ++IY
Sbjct: 171 NYGMTAISIY 180
>gi|160886626|ref|ZP_02067629.1| hypothetical protein BACOVA_04638 [Bacteroides ovatus ATCC 8483]
gi|156107037|gb|EDO08782.1| putative RNA methyltransferase, RsmD family [Bacteroides ovatus
ATCC 8483]
Length = 177
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 16/160 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G +R++ P+ RP + K F++L + + LDL++GTGS
Sbjct: 1 MRVISGIYKRRRFDVPRTFKARPTTDFAKENLFNVLNNYIDFEERITA---LDLFAGTGS 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IE +SRGC V +E DP S + E + +R + F +F+ K
Sbjct: 58 ISIELVSRGCDRVISIEKDPAHHSFICKIMKE----VQTDKCLPIRGDVF-----KFI-K 107
Query: 229 DG--PFDYMSVTPPYTAVDYEVV-EYPLRTDMLDTCGCLV 265
+G FD++ PPY + E + E + ++L G LV
Sbjct: 108 NGREQFDFIFADPPYALKELETIPELIFQNNLLKEGGLLV 147
>gi|422422767|ref|ZP_16499720.1| RNA methyltransferase, RsmD family [Listeria seeligeri FSL S4-171]
gi|313637000|gb|EFS02576.1| RNA methyltransferase, RsmD family [Listeria seeligeri FSL S4-171]
Length = 189
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L + G + RP + VK + F I+ LDL++G+G
Sbjct: 5 MRVIAGERKGHALKAVPGNNTRPTTDKVKESLFSIIGP------FFDGDVVLDLFAGSGG 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F++ + + + NLE F D + ++ R E ERA + + K
Sbjct: 59 LGIEALSRGAERAVFIDQAQAAIKTIRL-NLESCHFTDRAEVY--RNEA--ERALKLLHK 113
Query: 229 DG-PFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKD 269
+ FD + + PPY E + E+ M DT G VKIK
Sbjct: 114 NEWKFDLVFLDPPYKKQQLEKLLLQLEKLALVSENGRIICEHDKEAVMPDTVGNFVKIKA 173
Query: 270 RRFGRTHLAIY 280
+G T L+I+
Sbjct: 174 VSYGITVLSIF 184
>gi|296447800|ref|ZP_06889714.1| methyltransferase [Methylosinus trichosporium OB3b]
gi|296254719|gb|EFH01832.1| methyltransferase [Methylosinus trichosporium OB3b]
Length = 184
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R + L +P+ D+RP + ++ + FDIL A G P + R +DL++G G+
Sbjct: 1 MRIVAGALRGRNLKAPQSRDIRPTSDRLRESIFDILAHAYGDPVA--GARVIDLFAGVGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210
+G+EA+SRG FV+ D +L N++ G V+ +
Sbjct: 59 LGLEALSRGAERALFVD-DGVEARALLRANIDALGLGGVTRV 99
>gi|163867552|ref|YP_001608751.1| hypothetical protein Btr_0289 [Bartonella tribocorum CIP 105476]
gi|161017198|emb|CAK00756.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
Length = 188
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 18/139 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK + L SP +RP + + + F+IL S R LDL++GTG+
Sbjct: 1 MRIIGGKFAGRVLFSPIDQSIRPTSDRTRESLFNILSSRE--EQFWTNKRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL--DVSSIHTVRVETFLERAEQFV 226
+GIEA+SRG FVE ++E G L ++ + + L R +
Sbjct: 59 LGIEALSRGAKAAVFVE-----------NSVEGRGLLQKNIEAFELQSIGRILRRDATKL 107
Query: 227 GKDG---PFDYMSVTPPYT 242
G G PFD + PPY+
Sbjct: 108 GNIGTMLPFDVICADPPYS 126
>gi|395493344|ref|ZP_10424923.1| methyltransferase [Sphingomonas sp. PAMC 26617]
Length = 178
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 17/135 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R + L++PKG RP + V+ A F +L S G L DL++G+G+
Sbjct: 1 MRIIAGEWRGRPLVAPKGDATRPTADRVREALFSMLSSRLGSFEDLSVA---DLFAGSGA 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEW--TGFLDVSSIHTVRVETFLERAEQFV 226
+G+EA+SRG + FVE D P L+ T +S+ VR ++ +
Sbjct: 58 LGLEALSRGAASCIFVEQDK--------PALDALRTNIAKLSARADVRAQSVMALGHAV- 108
Query: 227 GKDGPFDYMSVTPPY 241
P D + + PPY
Sbjct: 109 ---APLDLILMDPPY 120
>gi|160946044|ref|ZP_02093267.1| hypothetical protein PEPMIC_00002 [Parvimonas micra ATCC 33270]
gi|158447862|gb|EDP24857.1| conserved hypothetical protein 95 [Parvimonas micra ATCC 33270]
Length = 89
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + +L SPKG+D RP + +K + F+IL LDL+SG+GS
Sbjct: 1 MRVISGSRKGHRLKSPKGLDTRPTQDRIKESLFNILGDIK------EDSLVLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204
VGIE +SRG E +F++ + + NL+ T F
Sbjct: 55 VGIEFLSRGSKECYFIDNSLNSIKTIGY-NLDATKF 89
>gi|300741701|ref|ZP_07071722.1| RNA methyltransferase, RsmD family [Rothia dentocariosa M567]
gi|300380886|gb|EFJ77448.1| RNA methyltransferase, RsmD family [Rothia dentocariosa M567]
Length = 203
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 11/142 (7%)
Query: 110 QVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169
+++ G A +L S G + RP + VK + F L+S G ++ R LD Y+G+G++
Sbjct: 3 RIIAGTAGGLRLASVPGENTRPTTDRVKESLFSKLESYG----VVQGARVLDAYAGSGAL 58
Query: 170 GIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG-K 228
G EA+SRG + V FVE P + N+ T S I T A+ +V
Sbjct: 59 GCEALSRGAASVEFVEKYPKAC-EITRRNVAAT-----SKIATGITRVTQGSAQSYVAVH 112
Query: 229 DGPFDYMSVTPPYTAVDYEVVE 250
GP+D + + PPY +V++
Sbjct: 113 SGPWDLVFLDPPYAFTQEQVLD 134
>gi|229075686|ref|ZP_04208668.1| Methyltransferase [Bacillus cereus Rock4-18]
gi|228707462|gb|EEL59653.1| Methyltransferase [Bacillus cereus Rock4-18]
Length = 188
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 36/194 (18%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMI------GPYFDGGTALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ---- 224
+GIEAISRG + FV+ D + V+ NLE IH + E + AE+
Sbjct: 55 LGIEAISRGIEKTIFVDRDSKAIK-VIHQNLESC------RIHE-QAEVYRNDAERAVKA 106
Query: 225 FVGKDGPFDYMSVTPPY---------TAVDYE---------VVEYPLRTDMLDTCGCLVK 266
+ ++ FD + + PPY + +D + E+ + D+ G LVK
Sbjct: 107 LIKREMSFDLILIDPPYKEQKIVSLISVMDQHGLLHRDGLIMSEHGNDVVLPDSIGNLVK 166
Query: 267 IKDRRFGRTHLAIY 280
++ +G T ++IY
Sbjct: 167 VRAENYGITAISIY 180
>gi|153010360|ref|YP_001371574.1| putative methyltransferase [Ochrobactrum anthropi ATCC 49188]
gi|151562248|gb|ABS15745.1| putative methyltransferase [Ochrobactrum anthropi ATCC 49188]
Length = 187
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 16/137 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L++P +RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGRFRGRALVTPSTNAIRPTTDRTRESLFNIL--AHNFPNKVEGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ---- 224
+G+EA+SRG FVE + +L N+E +++ T + R +
Sbjct: 59 LGLEALSRGARYATFVE-ESAEGRGLLRQNIE---------AFSLQGHTKILRRDACQLG 108
Query: 225 FVGKDGPFDYMSVTPPY 241
VG PFD + PPY
Sbjct: 109 IVGTMEPFDLVFADPPY 125
>gi|406673212|ref|ZP_11080436.1| RsmD family RNA methyltransferase [Bergeyella zoohelcum CCUG 30536]
gi|405586674|gb|EKB60424.1| RsmD family RNA methyltransferase [Bergeyella zoohelcum CCUG 30536]
Length = 191
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 26/177 (14%)
Query: 110 QVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169
+++ G+ + K++ +PK VRP + K A F IL + +S LDL+SG GS+
Sbjct: 6 RIISGQWKAKRISAPKHFTVRPTTDFAKEALFSILDNRYALASS----SVLDLFSGIGSI 61
Query: 170 GIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD-VSSIHTVRVETFLERAEQF--- 225
+E SRGC ++ VEM N + GF+ +S + + ++RA+ F
Sbjct: 62 TLEFASRGCQDIQSVEM-----------NAKHAGFIQHTASELDLVLNMNIQRADVFDWL 110
Query: 226 ---VGKDGPFDYMSVTPPYTAVD---YEVVEYPLRTDMLDTCGCLVKIKDRRFGRTH 276
GK +D + PP+ + E++ L D L G + R H
Sbjct: 111 KKNKGK-KQYDIIFADPPFDLDEKKYQELIALVLENDYLKENGVFILEHSSRMKLEH 166
>gi|291459591|ref|ZP_06598981.1| RNA methyltransferase, RsmD family [Oribacterium sp. oral taxon 078
str. F0262]
gi|291417869|gb|EFE91588.1| RNA methyltransferase, RsmD family [Oribacterium sp. oral taxon 078
str. F0262]
Length = 188
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 12/134 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTG 167
++V+ G ARR L + MD RP + +K F+++Q PG LDL++G+G
Sbjct: 1 MRVIAGSARRMNLRTVDSMDTRPTTDRIKETLFNMIQFDV-------PGTEVLDLFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+GIEA+SRG F + VS + NL T +D + + LE+ ++
Sbjct: 54 GIGIEALSRGAKRAVFCDNRKEAVS-CIQENLVRTHLMDRAELILGDYAAALEKLKR--- 109
Query: 228 KDGPFDYMSVTPPY 241
+D F + + PPY
Sbjct: 110 RDYHFGLVFLDPPY 123
>gi|289435394|ref|YP_003465266.1| methyltransferase [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|289171638|emb|CBH28184.1| methyltransferase, putative [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 185
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L + G + RP + VK + F I+ LDL++G+G
Sbjct: 1 MRVIAGERKGHALKAVPGNNTRPTTDKVKESLFSIIGP------FFDGDVVLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F++ + + + NLE F D + ++ R E ERA + + K
Sbjct: 55 LGIEALSRGAERAVFIDQAQAAIKTIRL-NLESCHFTDRAEVY--RNEA--ERALKLLHK 109
Query: 229 DG-PFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKD 269
+ FD + + PPY E + E+ M DT G VKIK
Sbjct: 110 NEWKFDLVFLDPPYKKQQLEKLLLQLEKLALVSENGRIICEHDKEAIMPDTVGNFVKIKA 169
Query: 270 RRFGRTHLAIY 280
+G T L+I+
Sbjct: 170 VSYGITVLSIF 180
>gi|227548104|ref|ZP_03978153.1| possible methyltransferase [Corynebacterium lipophiloflavum DSM
44291]
gi|227079830|gb|EEI17793.1| possible methyltransferase [Corynebacterium lipophiloflavum DSM
44291]
Length = 194
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 14/163 (8%)
Query: 110 QVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ G+AR +K+ + P+G RP + + F LQ G LDL++G+G+
Sbjct: 3 RIISGEARGRKIKVPPEG--TRPTSDRAREGLFSSLQVRFGFIDQT----VLDLFAGSGA 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG SEV VE DP V V+ N G +V + V+ T+L RA +
Sbjct: 57 LGLEAASRGASEVVLVENDPRAV-KVIEYNASVVGHPNV-HVEPVKASTYLARAPR---- 110
Query: 229 DGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKDRR 271
F + PPY D V E + G +V ++ R
Sbjct: 111 -NHFSMVLADPPYDLADESVAEMLAALEPALVDGAVVVVERHR 152
>gi|338706042|ref|YP_004672810.1| putative SAM dependent methyltransferase [Treponema
paraluiscuniculi Cuniculi A]
gi|335344103|gb|AEH40019.1| probable SAM dependent methyltransferase [Treponema
paraluiscuniculi Cuniculi A]
Length = 181
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 83/189 (43%), Gaps = 23/189 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG + L P G +RP M+ ++ + F +L GC +LDL++G+G
Sbjct: 1 MRITGGMLKNHVLRCPDG-PIRPAMDRMRESLFAVLGDMHGCS-------FLDLFAGSGV 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE---QF 225
G+EA SRG V FVE + S VL+ N++ L + VE ++ RA F
Sbjct: 53 CGLEAYSRGAYPVVFVERNVRSFS-VLLQNVQVA--LCRLECRCMAVERYIARARTLFHF 109
Query: 226 VGKDGPFDY---------MSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKDRRFGRTH 276
V D PF Y +S +V P + D LV+ R +GR+
Sbjct: 110 VYLDPPFPYRFHAELLQRLSRASLCREGSVVMVHRPREKKLADKIDSLVRTDQRVYGRSV 169
Query: 277 LAIYGPDWA 285
+ Y D A
Sbjct: 170 VDFYRRDKA 178
>gi|296108319|ref|YP_003620020.1| putative methylase [Legionella pneumophila 2300/99 Alcoy]
gi|295650221|gb|ADG26068.1| putative methylase [Legionella pneumophila 2300/99 Alcoy]
Length = 181
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 84/162 (51%), Gaps = 23/162 (14%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++++++GG R KK+ P +RP + V+ F+ L + +R R LD ++G+
Sbjct: 3 QVIRIIGGLYRGKKIHFPDVDGLRPTPDRVRETLFNWLMN------DIRNARCLDAFAGS 56
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET--FLERAEQ 224
G++G EA SRG S V F+E P +++ ++ D ++H ++ +T +L+++ +
Sbjct: 57 GALGFEAYSRGASHVVFIEQSPKAHASLQNTIRQF----DTPNLHLIKTDTLNYLKQSTE 112
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVK 266
FD + + PPY A++Y P D + T LVK
Sbjct: 113 ------QFDLIFLDPPY-ALNY----VPQCLDHIITNHLLVK 143
>gi|149181729|ref|ZP_01860221.1| hypothetical protein BSG1_18240 [Bacillus sp. SG-1]
gi|148850577|gb|EDL64735.1| hypothetical protein BSG1_18240 [Bacillus sp. SG-1]
Length = 189
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 10/133 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + + L + G RP + VK A F+I+ G LDL++G+G
Sbjct: 5 MRVISGECKGRPLKAVPGSGTRPTTDKVKEAIFNIIG------PYFESGTGLDLFAGSGG 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ D + V NL+ G+ + S ++ L+ + +
Sbjct: 59 LGIEALSRGLEKVIFVDKDFKAMQTVK-SNLDSCGYNEKSEVYRNEAGRALKAVNK---R 114
Query: 229 DGPFDYMSVTPPY 241
+ F Y+ + PPY
Sbjct: 115 ELKFHYIFLDPPY 127
>gi|429197306|ref|ZP_19189208.1| RNA methyltransferase, RsmD family [Streptomyces ipomoeae 91-03]
gi|428666974|gb|EKX66095.1| RNA methyltransferase, RsmD family [Streptomyces ipomoeae 91-03]
Length = 195
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 14/149 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGAAGGRRLSVPPGTGTRPTSDRAREGLFSTWQSLLGGP--LEGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG VE D V ++ ++ E +AEQ +
Sbjct: 59 AVGLEALSRGAGHALLVEADARAARTVRD---------NIRTLGLPGAEVRSGKAEQIIQ 109
Query: 228 K---DGPFDYMSVTPPYTAVDYEVVEYPL 253
P+D + + PPY D ++ E L
Sbjct: 110 GPPPAEPYDLVFLDPPYAVSDDDLREILL 138
>gi|196231143|ref|ZP_03130003.1| conserved hypothetical protein [Chthoniobacter flavus Ellin428]
gi|196224973|gb|EDY19483.1| conserved hypothetical protein [Chthoniobacter flavus Ellin428]
Length = 161
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 58/112 (51%), Gaps = 13/112 (11%)
Query: 133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVS 192
M+VVKGA + L + R LDL++G+G++GIEA+SRG + FVE D V+
Sbjct: 1 MDVVKGAIYSSLSD------FIIGARVLDLFAGSGALGIEALSRGAAAATFVESDRRAVA 54
Query: 193 NVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV 244
+ NLE T + V V FL+R VG G FD + PPY V
Sbjct: 55 AIE-KNLERTKL--TGDVQPVDVFRFLDR---LVGA-GSFDLILADPPYAKV 99
>gi|54298663|ref|YP_125032.1| hypothetical protein lpp2727 [Legionella pneumophila str. Paris]
gi|397665264|ref|YP_006506802.1| putative methyltransferase [Legionella pneumophila subsp.
pneumophila]
gi|53752448|emb|CAH13880.1| hypothetical protein lpp2727 [Legionella pneumophila str. Paris]
gi|395128675|emb|CCD06893.1| putative methyltransferase [Legionella pneumophila subsp.
pneumophila]
Length = 181
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 84/162 (51%), Gaps = 23/162 (14%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++++++GG R KK+ P +RP + V+ F+ L + +R R LD ++G+
Sbjct: 3 QVIRIIGGLYRGKKIHFPDVDGLRPTPDRVRETLFNWLMN------DIRNARCLDAFAGS 56
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET--FLERAEQ 224
G++G EA SRG S V F+E P +++ ++ D ++H ++ +T +L+++ +
Sbjct: 57 GALGFEAYSRGASHVVFIEQSPKAHTSLQNTIRQF----DTPNLHLIKTDTLNYLKQSTE 112
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVK 266
FD + + PPY A++Y P D + T LVK
Sbjct: 113 ------QFDLIFLDPPY-ALNY----VPQCLDHIITNHLLVK 143
>gi|384892832|ref|YP_005766925.1| hypothetical protein HPCU_04285 [Helicobacter pylori Cuz20]
gi|308062129|gb|ADO04017.1| hypothetical protein HPCU_04285 [Helicobacter pylori Cuz20]
Length = 200
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 88/195 (45%), Gaps = 23/195 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++GG + L PK RP +V+ + F+ LQ A +R +++++SG+ S
Sbjct: 10 FKIIGGACKGLGLNLPKISSTRPTKAIVRESFFNTLQ------AEIRGAHFIEVFSGSAS 63
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+G+EA+SRG F E + + + LE + ++TFL+ A + +
Sbjct: 64 MGLEALSRGAKSAVFFEQNKSAYATL----LENISLFKNRLKKEIEIQTFLDDAFKLLPT 119
Query: 228 ---KDGPFDYMSVTPPYTAVDYEVVEYPLRTDMLDTCGCLVKIKDRRFG-RTHLAIYGPD 283
K+G + + PP+ + + + C ++I +RF + LA++ +
Sbjct: 120 LCLKNGVLNILYFDPPFETSGF--------LGIYEKCFQALEILLKRFNPKNLLAVFEHE 171
Query: 284 WAQKKRKSEKKIPIV 298
A + KS + I+
Sbjct: 172 SAHEMPKSLVTLAII 186
>gi|329889974|ref|ZP_08268317.1| RNA methyltransferase, RsmD family [Brevundimonas diminuta ATCC
11568]
gi|328845275|gb|EGF94839.1| RNA methyltransferase, RsmD family [Brevundimonas diminuta ATCC
11568]
Length = 191
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R + +++P+G + RP + + A F++L+ A L R +DLY+G+G+
Sbjct: 1 MRIVAGQYRGRAIVTPEGQNTRPTSDRARQAIFNVLEHAP-WAEGLHEARVIDLYAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211
+G EA+SRG + FV+ D + N++ G +H
Sbjct: 60 LGFEALSRGAAFCLFVDTDDG-ARGAIRENMDAYGLFGRCRVH 101
>gi|402833612|ref|ZP_10882225.1| RNA methyltransferase, RsmD family [Selenomonas sp. CM52]
gi|402280105|gb|EJU28875.1| RNA methyltransferase, RsmD family [Selenomonas sp. CM52]
Length = 199
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 70/134 (52%), Gaps = 14/134 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +L +PKG RP + +K + F+IL + R LDL++GTG+
Sbjct: 1 MRIITGTARGCRLKTPKGEATRPTADRIKESLFNILGR------RVEEARVLDLFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + FV+ ++++ N T L+ + + VR + R +G
Sbjct: 55 LGLEALSRGAASALFVDEK---TASLIEENAAKTRLLEHAEV--VRADAL--RVLARLGA 107
Query: 229 DG-PFDYMSVTPPY 241
G FD + PPY
Sbjct: 108 LGRSFDLIFCDPPY 121
>gi|94986727|ref|YP_594660.1| N6-adenine-specific methylase [Lawsonia intracellularis PHE/MN1-00]
gi|442555552|ref|YP_007365377.1| RsmD family RNA methylase [Lawsonia intracellularis N343]
gi|94730976|emb|CAJ54339.1| N6-adenine-specific methylase [Lawsonia intracellularis PHE/MN1-00]
gi|441492999|gb|AGC49693.1| RsmD family RNA methylase [Lawsonia intracellularis N343]
Length = 190
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 28/192 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R + L + +G RP V+ A F +L S G LDL++G+GS
Sbjct: 1 MRIMTGSLRGRILKTIEGDGYRPATGKVREALFSMLTSRG---IVWDQTYILDLFAGSGS 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EAISRG +EV F+E +P V L N+E + S+ V FL + F
Sbjct: 58 LGFEAISRGAAEVCFIENNPKAV-QCLYKNIEKLRLFEQVSVVEQDVIQFLNQDSLF--- 113
Query: 229 DGPFDYMSVTPPYTAVDYEV--------------------VEYPLRTDMLDTCGCLVKIK 268
+ + + PPY E VE LR + L +
Sbjct: 114 -KLYQLVFIDPPYGGNRLETTISCVVEKGWIAPEGYIIAEVETTLRINFFQLHPQLELLS 172
Query: 269 DRRFGRTHLAIY 280
+R +G+T L I+
Sbjct: 173 NRSYGQTRLLIW 184
>gi|383114247|ref|ZP_09935012.1| RsmD family RNA methyltransferase [Bacteroides sp. D2]
gi|313694044|gb|EFS30879.1| RsmD family RNA methyltransferase [Bacteroides sp. D2]
Length = 177
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 16/160 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G +R++ P+ RP + K F++L + + LDL++GTGS
Sbjct: 1 MRVISGIYKRRRFDVPRTFKARPTTDFAKENLFNVLNNYIDFEEGVTA---LDLFAGTGS 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IE +SRGC V VE +P S + E + +R + F +F+ K
Sbjct: 58 ISIELVSRGCDRVISVEKEPAHHSFICKIMKE----VQTDKCLPIRGDVF-----KFI-K 107
Query: 229 DG--PFDYMSVTPPYTAVDYEVV-EYPLRTDMLDTCGCLV 265
+G FD++ PPY + E + E + D+L G LV
Sbjct: 108 NGREQFDFIFADPPYALKELETIPELIFQNDLLKEGGLLV 147
>gi|229174596|ref|ZP_04302126.1| Methyltransferase [Bacillus cereus MM3]
gi|423401227|ref|ZP_17378400.1| RsmD family RNA methyltransferase [Bacillus cereus BAG2X1-2]
gi|423457885|ref|ZP_17434682.1| RsmD family RNA methyltransferase [Bacillus cereus BAG5X2-1]
gi|423478069|ref|ZP_17454784.1| RsmD family RNA methyltransferase [Bacillus cereus BAG6X1-1]
gi|228608901|gb|EEK66193.1| Methyltransferase [Bacillus cereus MM3]
gi|401148269|gb|EJQ55762.1| RsmD family RNA methyltransferase [Bacillus cereus BAG5X2-1]
gi|401654217|gb|EJS71760.1| RsmD family RNA methyltransferase [Bacillus cereus BAG2X1-2]
gi|402428231|gb|EJV60328.1| RsmD family RNA methyltransferase [Bacillus cereus BAG6X1-1]
Length = 188
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 34/193 (17%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMI------GPYFDGGIALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQFVG 227
+GIEAISRG + FV+ D + V+ NLE + + ++ ERA + +
Sbjct: 55 LGIEAISRGIDKAIFVDRDNKAIK-VIHQNLESCRIQEQAEVY----RNDAERAVKALIK 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVVEYP--------LRTDML------------DTCGCLVKI 267
++ FD + + PPY D ++V L D L D+ G LVK+
Sbjct: 110 REISFDLILIDPPYK--DQKIVSLISVMDQHGLLHRDGLIMSEHGNDVVLPDSIGSLVKV 167
Query: 268 KDRRFGRTHLAIY 280
+ +G T ++IY
Sbjct: 168 RAENYGITAISIY 180
>gi|254463929|ref|ZP_05077340.1| putative methyltransferase [Rhodobacterales bacterium Y4I]
gi|206684837|gb|EDZ45319.1| putative methyltransferase [Rhodobacterales bacterium Y4I]
Length = 183
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 25/142 (17%)
Query: 109 LQVLGGKARRKKLLS----PKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYS 164
++++ G+ R + L + G +RP + V+ + F++L G P + R LDL++
Sbjct: 1 MRIIAGEFRGRALAAVGKGDAGAHLRPTTDRVRESLFNVLMHTGAIPGA----RVLDLFA 56
Query: 165 GTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE---TFLER 221
GTG++G+EA+SRG ++V FV D VS LI +I R E T L R
Sbjct: 57 GTGALGLEALSRGAAKVVFV--DDGRVSTGLIRK----------NIAICRAEDRCTLLRR 104
Query: 222 AEQFVGKD--GPFDYMSVTPPY 241
+G++ PFD + + PPY
Sbjct: 105 DALKLGQNPEPPFDLIFLDPPY 126
>gi|261408047|ref|YP_003244288.1| methyltransferase [Paenibacillus sp. Y412MC10]
gi|261284510|gb|ACX66481.1| methyltransferase [Paenibacillus sp. Y412MC10]
Length = 201
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 28/198 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ + L S G RP + VK + F ++ G LDL++GTG
Sbjct: 1 MRVVSGSAKGRPLKSVPGTSTRPTTDKVKESIFSMIGP------YFEGGIALDLFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+++P +S + NL+ + + ++ L+ E+ +
Sbjct: 55 LGIEALSRGMDRAVFVDVEPKSISTIK-DNLKAARLEESAEVYRNDAARALKALEK---R 110
Query: 229 DGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKDR 270
FD + + PPY + + V+EY + + G I+
Sbjct: 111 GYGFDLVFLDPPYRFKNGDELMLDMAERGLLQDSALVVLEYESSYNYAEEFGDFHCIRTA 170
Query: 271 RFGRTHLAIYGPDWAQKK 288
++G T ++IY D AQ +
Sbjct: 171 KYGETAVSIYRYDTAQDQ 188
>gi|187918079|ref|YP_001883642.1| methyltransferase [Borrelia hermsii DAH]
gi|119860927|gb|AAX16722.1| methyltransferase [Borrelia hermsii DAH]
Length = 190
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 25/187 (13%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL--QSAGGCPASLRPGRWLDLYSG 165
L+ V GK + K+ PK VRP+M +V+ A F I+ Q G +LD+++G
Sbjct: 9 LMHVSAGKYKGWKVAFPKIGGVRPVMAIVREAFFSIIFNQIVGSS--------FLDVFAG 60
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
TG + +EA+SRG S H V+ + S VLI N E + + E FL++ + +
Sbjct: 61 TGIMSLEALSRGASLAHLVDYNKSSKS-VLIKNFEVVS--EPYKFCFKKAELFLKKRDLY 117
Query: 226 ---VGKDGPFDY------MSVTPPYTAVDYE---VVEYPLRTDMLDTCGCLVKIKDRRFG 273
+ D PF Y + + +++ + ++ YP R ++ L K R++G
Sbjct: 118 YDLIYLDPPFGYSFKENLLKIISENESLNKDAKIIIHYPSRENLDSNILRLSKYDSRKYG 177
Query: 274 RTHLAIY 280
+ L +
Sbjct: 178 GSRLDFF 184
>gi|404320098|ref|ZP_10968031.1| putative methyltransferase [Ochrobactrum anthropi CTS-325]
Length = 187
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 16/137 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L++P +RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGRFRGRALVTPSTNAIRPTTDRTRESLFNIL--AHNFPDKVEGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ---- 224
+G+EA+SRG FVE + +L N+E +++ T + R +
Sbjct: 59 LGLEALSRGARYATFVE-ESAEGRGLLRQNIE---------AFSLQGHTKILRRDACQLG 108
Query: 225 FVGKDGPFDYMSVTPPY 241
VG PFD + PPY
Sbjct: 109 IVGTMEPFDLVFADPPY 125
>gi|378835900|ref|YP_005205176.1| methyltransferase [Mycoplasma hyorhinis GDL-1]
gi|385858837|ref|YP_005905348.1| Ribosomal RNA small subunit methyltransferase D [Mycoplasma
hyorhinis MCLD]
gi|330723926|gb|AEC46296.1| hypothetical Ribosomal RNA small subunit methyltransferase D
[Mycoplasma hyorhinis MCLD]
gi|367460685|gb|AEX14208.1| methyltransferase [Mycoplasma hyorhinis GDL-1]
Length = 183
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 32/158 (20%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++++ GK R + +P VRPM + + A F LQ + R LDL+SGTG
Sbjct: 1 MIRIIAGKYRGLLIKNPDFNIVRPMSDRTREAIFSSLQFF------IPDKRVLDLFSGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG E+ E+D V N+ +++ + H++ F++R V
Sbjct: 55 AIGIEALSRGAKELIASELDKKVFDNI----------VELKNKHSIE-NYFIQRKSALVL 103
Query: 228 KD----GPFDYMSVTPPYTAV-----------DYEVVE 250
D F + + PP+ + DY+++E
Sbjct: 104 LDEVQNQKFSIIFLDPPHAQIEVTKASFAKIYDYQILE 141
>gi|331265659|ref|YP_004325289.1| methyltransferase, putative [Streptococcus oralis Uo5]
gi|326682331|emb|CBY99948.1| methyltransferase, putative [Streptococcus oralis Uo5]
Length = 179
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 13/134 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E ERA + V K
Sbjct: 55 LSIEAVSRGMSHAVLVERDRK-AQAIIAENIQMTK--EVSKFQLLKMEA--ERALEQV-K 108
Query: 229 DGPFDYMSVTPPYT 242
D PFD + + PPY
Sbjct: 109 D-PFDLVFLDPPYA 121
>gi|241889588|ref|ZP_04776886.1| RNA methyltransferase, RsmD family [Gemella haemolysans ATCC 10379]
gi|241863210|gb|EER67594.1| RNA methyltransferase, RsmD family [Gemella haemolysans ATCC 10379]
Length = 184
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 13/134 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R KL + +GM+ RP + +K F+++ + LDL+ GTG
Sbjct: 1 MRVIAGKYRSIKLNAVEGMNTRPTTDKIKENLFNMIDCY--------DCKVLDLFGGTGG 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+GIEA+SRG F++ + V+ N+E +D + R + +RA + G
Sbjct: 53 LGIEALSRGAKHSTFIDGSNNAIK-VIKSNIEKCR-IDATDYSLYRND--FKRALKIFGK 108
Query: 228 KDGPFDYMSVTPPY 241
K+ FD + + PPY
Sbjct: 109 KEEKFDIIFLDPPY 122
>gi|365132904|ref|ZP_09342465.1| RsmD family RNA methyltransferase [Subdoligranulum sp. 4_3_54A2FAA]
gi|363616224|gb|EHL67673.1| RsmD family RNA methyltransferase [Subdoligranulum sp. 4_3_54A2FAA]
Length = 182
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 84/192 (43%), Gaps = 30/192 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++V+ G AR +L + G ++ RP ++ VK F +Q L R LDL++G+G
Sbjct: 1 MRVISGTARGTRLAALPGEEITRPTVDRVKEGMFSAVQFL------LAGARVLDLFAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+GIEA+SRG + F++ + V+ NL+ G + +S+ E +L +
Sbjct: 55 QLGIEALSRGAARCVFIDSSREACA-VVRQNLKAAGLFEKASVAETAAEMYLAACRE--- 110
Query: 228 KDGPFDYMSVTPPY-------TAVDYEVVEYPLRTDMLDT---------CGCLVKIKDRR 271
FD + + PPY V P T + +T CG L K +
Sbjct: 111 ---RFDLVLLDPPYRQGTVAALLPAVAAVTAPGGTVLAETEHGAPLPERCGTLTLRKQYK 167
Query: 272 FGRTHLAIYGPD 283
+G LA Y D
Sbjct: 168 YGTVALARYEAD 179
>gi|114705780|ref|ZP_01438683.1| hypothetical protein FP2506_14979 [Fulvimarina pelagi HTCC2506]
gi|114538626|gb|EAU41747.1| hypothetical protein FP2506_14979 [Fulvimarina pelagi HTCC2506]
Length = 185
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 67/134 (50%), Gaps = 10/134 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R +KL P D+RP + + F+IL G L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRKLSVPATQDIRPTTDRSRETLFNILSHHPGI--KLDGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLI-PNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+G EA+SRG F+E V LI N+E G + I+ R T L VG
Sbjct: 59 LGCEALSRGARFCVFIE--EGVEGRGLIRQNVETFGLQGRTKIYR-RDATKLGA----VG 111
Query: 228 KDGPFDYMSVTPPY 241
PFD + PPY
Sbjct: 112 TFEPFDLLFADPPY 125
>gi|348169244|ref|ZP_08876138.1| methyltransferase (methylase) [Saccharopolyspora spinosa NRRL
18395]
Length = 186
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 64/133 (48%), Gaps = 17/133 (12%)
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
V G R+ + P+G RP E V+ A F L+S L R LDLY G+G++G
Sbjct: 5 VAGSVGGRRIDVPPRG--TRPTSERVREALFSALESV----IELTGARVLDLYGGSGALG 58
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
+EA+SRG FVE D + +L N GF + VRVE +AE +G
Sbjct: 59 LEALSRGAGHATFVESDR-RAAQLLRRNAASLGFRE------VRVEQ--AKAETLIGTPA 109
Query: 231 --PFDYMSVTPPY 241
PFD + PPY
Sbjct: 110 AQPFDVVLADPPY 122
>gi|329929990|ref|ZP_08283629.1| RNA methyltransferase, RsmD family [Paenibacillus sp. HGF5]
gi|328935512|gb|EGG31982.1| RNA methyltransferase, RsmD family [Paenibacillus sp. HGF5]
Length = 208
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 28/204 (13%)
Query: 103 RTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDL 162
+ + ++V+ G A+ + L S G RP + VK + F ++ G LDL
Sbjct: 2 KRVNEAVRVVSGSAKGRPLKSVPGTSTRPTTDKVKESIFSMIGP------YFEGGIALDL 55
Query: 163 YSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
++GTG +GIEA+SRG F++++P +S + NL+ + + ++ L+
Sbjct: 56 FAGTGGLGIEALSRGMDRAVFIDVEPKSISTIK-DNLKAARLEESAEVYRNDAARALKAL 114
Query: 223 EQFVGKDGPFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCL 264
E+ + FD + + PPY + + V+EY + + G
Sbjct: 115 EK---RGYGFDLVFLDPPYRFKNGDELMLDMAERGLLQDSALVVLEYESSYNYAEEFGDF 171
Query: 265 VKIKDRRFGRTHLAIYGPDWAQKK 288
I+ ++G T ++IY D AQ +
Sbjct: 172 HCIRTAKYGETAISIYRYDTAQDQ 195
>gi|306830165|ref|ZP_07463349.1| probable methyltransferase [Streptococcus mitis ATCC 6249]
gi|304427691|gb|EFM30787.1| probable methyltransferase [Streptococcus mitis ATCC 6249]
Length = 179
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 13/134 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E +RA + VG
Sbjct: 55 LSIEAVSRGMSSAVLVERDRK-AQAIIAENIQMTK--EVSKFQLLKMEA--DRALEQVG- 108
Query: 229 DGPFDYMSVTPPYT 242
G FD + + PPY
Sbjct: 109 -GTFDLVFLDPPYA 121
>gi|427719333|ref|YP_007067327.1| methyltransferase [Calothrix sp. PCC 7507]
gi|427351769|gb|AFY34493.1| methyltransferase [Calothrix sp. PCC 7507]
Length = 181
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 12/145 (8%)
Query: 119 KKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC 178
++L + G D RP V+ A F+I Q + RWLDL +GTGS+G EA+ RG
Sbjct: 9 RQLKTLPGNDTRPTSARVREAVFNIWQ------GKIADCRWLDLCAGTGSMGAEALCRGA 62
Query: 179 SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVT 238
S V +E + I W ++ V L++ + GK FD +
Sbjct: 63 SLVFGIEQSSRACA---IIQQNWQQMVNAGQEFQVLRGNVLQQVKTITGK--KFDRIYFD 117
Query: 239 PPYTAVDYE-VVEYPLRTDMLDTCG 262
PPY + Y+ V+E +LD G
Sbjct: 118 PPYASGLYQPVLEAIAHYQLLDIDG 142
>gi|291277312|ref|YP_003517084.1| DNA methylase [Helicobacter mustelae 12198]
gi|290964506|emb|CBG40358.1| possible DNA methylase [Helicobacter mustelae 12198]
Length = 217
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 98 KSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG 157
K E+ ++V+GG + LL P R ++K + F+ LQ+ +
Sbjct: 6 KKNEQNAKKSTIKVIGGMFKGHSLLMPHSHTTRSSKSILKESLFNTLQN------DILSF 59
Query: 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200
++++++GTGS+GIEA+SRG V F E DP + +L N+E
Sbjct: 60 SFVEIFAGTGSIGIEALSRGAKSVIFFEKDPEAFA-ILRKNIE 101
>gi|444913886|ref|ZP_21234032.1| Ribosomal RNA small subunit methyltransferase D [Cystobacter fuscus
DSM 2262]
gi|444715184|gb|ELW56055.1| Ribosomal RNA small subunit methyltransferase D [Cystobacter fuscus
DSM 2262]
Length = 185
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 38/196 (19%)
Query: 109 LQVLGGKARRKKLLSPKGMD--VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++++ G A+ + L PK +RP + V+ F++L L R LDLY+GT
Sbjct: 1 MRIVAGSAKGRALAGPKATSKHIRPTADRVRETLFNVLGQ------WLEGQRVLDLYAGT 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAE 223
G++G+EA+SRG V V+ D ++ + N + GF + RVE + RA
Sbjct: 55 GALGLEAVSRGAKGVVLVDSDREALA-LCRANTDTLGF-------SARVEVLAQPVARAL 106
Query: 224 QFVGKDGP-FDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCL 264
+ +G+ F + PPY A E V+E+ R +
Sbjct: 107 ETLGRRADRFQLIFADPPYAARVVETVLEGLSAHQLLAEGGTVVIEHDKREPAPEAHAGF 166
Query: 265 VKIKDRRFGRTHLAIY 280
++ RRFG T ++++
Sbjct: 167 TRVDQRRFGDTLVSLF 182
>gi|422419676|ref|ZP_16496631.1| RNA methyltransferase, RsmD family [Listeria seeligeri FSL N1-067]
gi|313632466|gb|EFR99485.1| RNA methyltransferase, RsmD family [Listeria seeligeri FSL N1-067]
Length = 189
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 30/191 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L + G + RP + VK + F I+ LDL++G+G
Sbjct: 5 MRVIAGERKGHALKAVPGNNTRPTTDKVKESLFSIIGP------FFDGDVVLDLFAGSGG 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F++ + + + NLE F D + ++ R E ERA + + K
Sbjct: 59 LGIEALSRGAERAVFIDQAQAAIKTIRL-NLESCHFTDRAEVY--RNEA--ERALKLLHK 113
Query: 229 DG-PFDYMSVTPPYTAVDYE------------------VVEYPLRTDMLDTCGCLVKIKD 269
+ FD + + PPY E + E+ M DT G VKIK
Sbjct: 114 NEWKFDLVFLDPPYKKQQLEKLLLQLEKLALVSENGRIICEHDKEAVMPDTVGNFVKIKA 173
Query: 270 RRFGRTHLAIY 280
+G T L+I+
Sbjct: 174 VSYGITVLSIF 184
>gi|303233931|ref|ZP_07320580.1| RNA methyltransferase, RsmD family [Finegoldia magna BVS033A4]
gi|302494856|gb|EFL54613.1| RNA methyltransferase, RsmD family [Finegoldia magna BVS033A4]
Length = 186
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 23/179 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTG 167
++V+ GK R L + RP +K A F ++ ++P + LDL++G+G
Sbjct: 1 MKVISGKMRGMNLNTDLDRFTRPTEGKIKEAIFSVI-------FQVKPNSKALDLFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV-ETFLERAEQFV 226
+VGIE ISRGC V F E + + N+E T + + + + L Q +
Sbjct: 54 AVGIEFISRGCDLVVFSEASSDNIR-CINENIEHTKSQEFTKVFKGDFKKNILNIKRQGI 112
Query: 227 GKDGPFDYMSVTPPYTAVDY--EVVEYPLRTDMLDTCGCLVKIK------DRRFGRTHL 277
FDY+ + PPY ++Y E ++ L D+L+ CLV ++ D FG +L
Sbjct: 113 ----KFDYVFIDPPYERLNYYKESIQMLLDNDILND-DCLVILESEKELPDEYFGSLNL 166
>gi|113475788|ref|YP_721849.1| putative methyltransferase [Trichodesmium erythraeum IMS101]
gi|110166836|gb|ABG51376.1| putative methyltransferase [Trichodesmium erythraeum IMS101]
Length = 182
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 13/132 (9%)
Query: 119 KKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRPGRWLDLYSGTGSVGIEAISRG 177
++L + GM++RP + V+ A F+I Q+ GC RWLD+ +G GS+G EA+ RG
Sbjct: 9 RQLKTLPGMEIRPTLAKVREAVFNIWQNNIDGC-------RWLDICAGVGSMGAEALCRG 61
Query: 178 CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV 237
S + M+ + + LI W S V L+R + VG+ FD +
Sbjct: 62 ASIA--IAMEQYSPACTLIRQ-NWQLVASSSQEFQVLRGDVLKRLKVLVGQK--FDLIYF 116
Query: 238 TPPYTAVDYEVV 249
PPYT+ Y+ V
Sbjct: 117 DPPYTSNLYQPV 128
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,926,734,804
Number of Sequences: 23463169
Number of extensions: 212968453
Number of successful extensions: 558629
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 2261
Number of HSP's that attempted gapping in prelim test: 554491
Number of HSP's gapped (non-prelim): 3647
length of query: 299
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 158
effective length of database: 9,050,888,538
effective search space: 1430040389004
effective search space used: 1430040389004
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 76 (33.9 bits)