Query 022298
Match_columns 299
No_of_seqs 322 out of 2320
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 02:27:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022298.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022298hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03602 Cons_hypoth95: Conser 100.0 1.4E-43 3.1E-48 312.2 15.0 164 109-281 1-183 (183)
2 COG0742 N6-adenine-specific me 100.0 1E-42 2.2E-47 306.0 18.6 165 108-282 1-185 (187)
3 TIGR00095 RNA methyltransferas 100.0 1.2E-36 2.7E-41 269.1 19.5 166 106-281 6-189 (189)
4 PRK10909 rsmD 16S rRNA m(2)G96 100.0 1.7E-33 3.8E-38 251.1 19.7 169 100-282 3-190 (199)
5 COG2890 HemK Methylase of poly 99.6 1.7E-15 3.7E-20 141.8 12.1 125 102-245 62-190 (280)
6 COG2263 Predicted RNA methylas 99.6 4.1E-15 8.8E-20 131.0 12.2 79 153-244 43-121 (198)
7 TIGR03704 PrmC_rel_meth putati 99.6 2.5E-15 5.4E-20 138.5 11.2 128 100-243 34-165 (251)
8 PF05175 MTS: Methyltransferas 99.6 9.7E-15 2.1E-19 126.6 13.7 109 120-245 3-112 (170)
9 TIGR02085 meth_trns_rumB 23S r 99.6 1E-14 2.3E-19 141.5 14.9 114 117-243 199-312 (374)
10 COG1092 Predicted SAM-dependen 99.6 2.9E-15 6.2E-20 146.0 10.1 85 155-243 217-303 (393)
11 TIGR00536 hemK_fam HemK family 99.6 5.1E-15 1.1E-19 138.4 11.3 128 102-244 64-195 (284)
12 PF13659 Methyltransf_26: Meth 99.6 4.8E-15 1E-19 119.0 9.5 82 156-243 1-82 (117)
13 PRK01544 bifunctional N5-gluta 99.6 3.2E-15 6.8E-20 150.5 10.3 138 98-244 61-219 (506)
14 PRK14966 unknown domain/N5-glu 99.6 8.8E-15 1.9E-19 143.4 12.0 128 98-243 200-331 (423)
15 PRK15128 23S rRNA m(5)C1962 me 99.6 1.2E-14 2.7E-19 142.1 11.7 86 155-244 220-306 (396)
16 PF10672 Methyltrans_SAM: S-ad 99.6 1.5E-14 3.2E-19 135.8 11.5 82 155-241 123-205 (286)
17 PRK05031 tRNA (uracil-5-)-meth 99.6 3.4E-14 7.4E-19 137.4 14.1 117 119-243 175-300 (362)
18 TIGR03533 L3_gln_methyl protei 99.6 3.5E-14 7.5E-19 133.1 12.2 129 100-244 68-202 (284)
19 COG4123 Predicted O-methyltran 99.5 2.7E-14 6E-19 131.2 10.9 107 126-247 24-131 (248)
20 PRK11805 N5-glutamine S-adenos 99.5 6.5E-14 1.4E-18 132.8 12.4 128 100-243 80-213 (307)
21 PRK11783 rlmL 23S rRNA m(2)G24 99.5 8.2E-14 1.8E-18 145.2 11.3 82 155-243 538-620 (702)
22 KOG2904 Predicted methyltransf 99.5 1.3E-13 2.9E-18 127.4 10.8 133 105-244 99-235 (328)
23 COG2813 RsmC 16S RNA G1207 met 99.5 2.4E-13 5.2E-18 127.7 12.5 197 28-247 27-240 (300)
24 PRK03522 rumB 23S rRNA methylu 99.5 5.1E-13 1.1E-17 126.8 14.8 113 118-243 140-252 (315)
25 PF01170 UPF0020: Putative RNA 99.5 2.1E-13 4.6E-18 119.7 9.2 99 130-243 10-118 (179)
26 TIGR02143 trmA_only tRNA (urac 99.5 1E-12 2.2E-17 126.8 14.5 114 119-243 166-291 (353)
27 PF06325 PrmA: Ribosomal prote 99.5 2E-13 4.2E-18 128.9 8.9 118 92-239 114-233 (295)
28 PRK10742 putative methyltransf 99.4 6.2E-13 1.4E-17 122.2 10.7 80 158-245 91-178 (250)
29 COG2264 PrmA Ribosomal protein 99.4 7.7E-13 1.7E-17 124.6 11.6 126 88-239 110-237 (300)
30 PRK13168 rumA 23S rRNA m(5)U19 99.4 1.2E-12 2.5E-17 129.8 13.0 115 116-243 262-379 (443)
31 TIGR00308 TRM1 tRNA(guanine-26 99.4 1.1E-12 2.4E-17 127.5 12.3 78 157-243 46-125 (374)
32 PRK14967 putative methyltransf 99.4 2.4E-12 5.2E-17 116.1 13.0 110 116-243 4-113 (223)
33 COG2265 TrmA SAM-dependent met 99.4 3.5E-12 7.7E-17 126.1 14.1 117 118-245 260-376 (432)
34 PRK09328 N5-glutamine S-adenos 99.4 5.5E-12 1.2E-16 116.0 12.7 111 116-243 75-187 (275)
35 PRK15001 SAM-dependent 23S rib 99.4 5E-12 1.1E-16 123.1 12.5 112 118-245 198-312 (378)
36 TIGR00138 gidB 16S rRNA methyl 99.4 3.9E-12 8.5E-17 111.9 10.5 101 125-239 14-117 (181)
37 PF05958 tRNA_U5-meth_tr: tRNA 99.4 4.4E-12 9.4E-17 122.4 11.7 120 118-245 164-292 (352)
38 TIGR00406 prmA ribosomal prote 99.4 1.3E-11 2.8E-16 115.8 14.5 98 124-240 137-234 (288)
39 TIGR03534 RF_mod_PrmC protein- 99.4 1.2E-11 2.7E-16 111.8 13.3 110 116-243 55-166 (251)
40 TIGR01177 conserved hypothetic 99.3 3.3E-12 7.1E-17 121.8 10.0 94 133-243 167-260 (329)
41 TIGR00479 rumA 23S rRNA (uraci 99.3 1.4E-11 3E-16 121.4 14.5 114 117-243 258-374 (431)
42 PRK04338 N(2),N(2)-dimethylgua 99.3 1.1E-11 2.5E-16 120.8 13.5 76 156-240 58-134 (382)
43 COG2242 CobL Precorrin-6B meth 99.3 8.1E-12 1.8E-16 110.1 11.2 94 131-240 17-111 (187)
44 PF09445 Methyltransf_15: RNA 99.3 3.2E-12 7E-17 111.0 7.8 84 158-247 2-85 (163)
45 KOG3420 Predicted RNA methylas 99.3 2.8E-12 6.1E-17 109.0 7.2 103 130-245 26-128 (185)
46 PLN02672 methionine S-methyltr 99.3 8.3E-12 1.8E-16 134.3 12.6 117 115-244 83-216 (1082)
47 COG1041 Predicted DNA modifica 99.3 7E-12 1.5E-16 119.8 9.0 100 129-245 176-278 (347)
48 PF02475 Met_10: Met-10+ like- 99.2 2.4E-11 5.3E-16 108.8 9.0 80 155-243 101-181 (200)
49 PRK09489 rsmC 16S ribosomal RN 99.2 5.9E-11 1.3E-15 114.2 12.3 108 118-244 166-274 (342)
50 smart00650 rADc Ribosomal RNA 99.2 2.8E-11 6.1E-16 104.5 9.0 77 155-243 13-89 (169)
51 PF12847 Methyltransf_18: Meth 99.2 5.6E-11 1.2E-15 94.4 10.1 76 156-239 2-78 (112)
52 KOG2187 tRNA uracil-5-methyltr 99.2 3E-11 6.6E-16 119.8 9.9 125 111-244 343-468 (534)
53 TIGR00537 hemK_rel_arch HemK-r 99.2 8.5E-11 1.8E-15 102.2 10.6 76 155-243 19-94 (179)
54 COG2520 Predicted methyltransf 99.2 1.3E-10 2.9E-15 111.4 12.7 82 154-243 187-268 (341)
55 PRK00377 cbiT cobalt-precorrin 99.2 1.6E-10 3.4E-15 102.4 11.2 95 131-239 23-119 (198)
56 PRK00517 prmA ribosomal protei 99.2 1.8E-10 4E-15 105.8 11.9 92 124-240 97-188 (250)
57 COG0116 Predicted N6-adenine-s 99.2 6.4E-11 1.4E-15 114.6 9.1 81 155-243 191-311 (381)
58 PRK08287 cobalt-precorrin-6Y C 99.2 2.5E-10 5.4E-15 99.9 11.7 93 130-240 13-106 (187)
59 PHA03412 putative methyltransf 99.2 4.9E-11 1.1E-15 109.2 7.0 74 155-243 49-126 (241)
60 PRK11783 rlmL 23S rRNA m(2)G24 99.2 1.3E-10 2.8E-15 121.4 10.4 101 131-243 172-315 (702)
61 PRK07402 precorrin-6B methylas 99.1 7.6E-10 1.7E-14 97.7 13.0 98 128-240 20-118 (196)
62 PRK11727 23S rRNA mA1618 methy 99.1 4.5E-10 9.9E-15 107.2 10.8 140 101-245 56-203 (321)
63 TIGR00446 nop2p NOL1/NOP2/sun 99.1 5.2E-10 1.1E-14 103.8 10.1 80 155-243 71-152 (264)
64 PHA03411 putative methyltransf 99.1 3.9E-10 8.4E-15 105.4 8.4 74 155-243 64-138 (279)
65 PRK14902 16S rRNA methyltransf 99.0 6.7E-10 1.5E-14 110.1 9.7 81 155-243 250-332 (444)
66 PLN02781 Probable caffeoyl-CoA 99.0 1.7E-09 3.8E-14 98.7 11.0 84 155-240 68-153 (234)
67 PRK14968 putative methyltransf 99.0 1.9E-09 4E-14 93.1 10.5 79 155-243 23-102 (188)
68 PRK10901 16S rRNA methyltransf 99.0 1.1E-09 2.5E-14 108.0 10.0 81 155-243 244-325 (427)
69 PTZ00338 dimethyladenosine tra 99.0 2.4E-09 5.3E-14 101.1 11.1 78 155-243 36-113 (294)
70 PRK14903 16S rRNA methyltransf 99.0 2.5E-09 5.5E-14 105.9 11.6 80 155-242 237-318 (431)
71 TIGR02469 CbiT precorrin-6Y C5 99.0 5.4E-09 1.2E-13 83.8 11.4 78 155-240 19-97 (124)
72 PF13847 Methyltransf_31: Meth 99.0 3.3E-09 7.1E-14 89.6 10.6 79 155-241 3-83 (152)
73 TIGR00080 pimt protein-L-isoas 99.0 4E-09 8.7E-14 94.6 11.1 80 155-243 77-158 (215)
74 PRK00107 gidB 16S rRNA methylt 99.0 6.6E-09 1.4E-13 92.1 11.4 93 134-239 27-120 (187)
75 KOG2730 Methylase [General fun 99.0 2.2E-09 4.8E-14 96.9 8.4 108 130-248 75-182 (263)
76 PRK14904 16S rRNA methyltransf 98.9 3.7E-09 8E-14 105.0 10.0 79 155-243 250-330 (445)
77 PRK14896 ksgA 16S ribosomal RN 98.9 5.4E-09 1.2E-13 96.6 10.0 87 136-243 17-103 (258)
78 PRK00274 ksgA 16S ribosomal RN 98.9 4E-09 8.7E-14 98.2 8.8 89 135-243 29-117 (272)
79 PRK14901 16S rRNA methyltransf 98.9 7.2E-09 1.6E-13 102.6 10.4 84 155-243 252-337 (434)
80 PRK13944 protein-L-isoaspartat 98.9 1.5E-08 3.2E-13 90.5 10.9 80 155-242 72-153 (205)
81 PRK00811 spermidine synthase; 98.9 1.2E-08 2.6E-13 95.7 10.6 81 155-242 76-163 (283)
82 PLN02476 O-methyltransferase 98.9 2.9E-08 6.3E-13 93.1 13.1 87 154-242 117-205 (278)
83 TIGR02021 BchM-ChlM magnesium 98.9 2E-08 4.2E-13 90.0 11.1 90 131-237 36-125 (219)
84 TIGR00563 rsmB ribosomal RNA s 98.9 1.1E-08 2.4E-13 101.0 10.2 83 155-243 238-321 (426)
85 PRK11036 putative S-adenosyl-L 98.9 1.9E-08 4.1E-13 92.4 11.0 78 155-240 44-121 (255)
86 PF02384 N6_Mtase: N-6 DNA Met 98.9 5.3E-09 1.1E-13 98.4 7.5 103 129-244 27-138 (311)
87 COG2521 Predicted archaeal met 98.8 2E-09 4.2E-14 98.1 3.7 83 155-243 134-217 (287)
88 PRK13942 protein-L-isoaspartat 98.8 3.3E-08 7.2E-13 88.8 10.5 90 134-239 62-153 (212)
89 TIGR00091 tRNA (guanine-N(7)-) 98.8 6E-08 1.3E-12 85.8 10.7 80 155-240 16-96 (194)
90 TIGR02752 MenG_heptapren 2-hep 98.8 7.5E-08 1.6E-12 86.4 11.5 90 136-241 33-124 (231)
91 COG2226 UbiE Methylase involve 98.8 6.8E-08 1.5E-12 88.8 10.9 88 135-238 38-126 (238)
92 PLN02585 magnesium protoporphy 98.7 1.3E-07 2.8E-12 90.3 12.9 93 129-237 122-218 (315)
93 TIGR02987 met_A_Alw26 type II 98.7 3.4E-08 7.3E-13 99.9 9.3 112 129-244 5-125 (524)
94 PRK07580 Mg-protoporphyrin IX 98.7 1.1E-07 2.5E-12 84.9 11.6 92 131-238 43-134 (230)
95 PRK00121 trmB tRNA (guanine-N( 98.7 7.6E-08 1.6E-12 85.8 10.3 80 155-240 40-120 (202)
96 PRK04457 spermidine synthase; 98.7 7.9E-08 1.7E-12 89.3 10.7 78 155-239 66-144 (262)
97 PF01596 Methyltransf_3: O-met 98.7 1.9E-07 4.2E-12 84.0 12.7 103 130-240 26-130 (205)
98 TIGR00417 speE spermidine synt 98.7 4.5E-07 9.8E-12 84.3 15.4 81 155-242 72-156 (270)
99 PRK11207 tellurite resistance 98.7 7.7E-08 1.7E-12 85.4 9.5 75 155-240 30-104 (197)
100 TIGR00477 tehB tellurite resis 98.7 1E-07 2.2E-12 84.4 10.2 76 155-242 30-105 (195)
101 COG1867 TRM1 N2,N2-dimethylgua 98.7 1.3E-07 2.8E-12 91.2 11.5 80 156-244 53-133 (380)
102 PRK03612 spermidine synthase; 98.7 5E-08 1.1E-12 98.9 9.2 82 155-243 297-385 (521)
103 PF01209 Ubie_methyltran: ubiE 98.7 7.2E-08 1.6E-12 88.2 9.4 87 135-237 34-122 (233)
104 PRK00312 pcm protein-L-isoaspa 98.7 1.1E-07 2.4E-12 84.7 10.0 78 155-242 78-155 (212)
105 PF13649 Methyltransf_25: Meth 98.6 1.4E-07 3.1E-12 74.2 8.4 69 159-237 1-73 (101)
106 PLN02396 hexaprenyldihydroxybe 98.6 1.4E-07 3.1E-12 90.2 9.9 75 154-237 130-204 (322)
107 PRK12335 tellurite resistance 98.6 2.1E-07 4.6E-12 87.1 10.6 74 155-240 120-193 (287)
108 TIGR00755 ksgA dimethyladenosi 98.6 1.5E-07 3.2E-12 86.6 9.1 88 135-243 16-106 (253)
109 PRK15451 tRNA cmo(5)U34 methyl 98.6 4.6E-07 9.9E-12 83.1 11.8 77 155-241 56-135 (247)
110 PLN02244 tocopherol O-methyltr 98.6 2.3E-07 4.9E-12 89.2 10.1 75 155-238 118-193 (340)
111 KOG3191 Predicted N6-DNA-methy 98.6 4.4E-07 9.6E-12 80.0 10.7 77 156-243 44-122 (209)
112 COG2227 UbiG 2-polyprenyl-3-me 98.6 1.3E-07 2.8E-12 86.6 7.3 73 154-237 58-130 (243)
113 PF02005 TRM: N2,N2-dimethylgu 98.6 2.4E-07 5.3E-12 90.4 9.7 106 126-244 19-133 (377)
114 cd02440 AdoMet_MTases S-adenos 98.6 4.2E-07 9E-12 68.2 8.5 78 158-243 1-78 (107)
115 KOG1500 Protein arginine N-met 98.6 2.2E-07 4.8E-12 88.7 8.4 78 153-240 175-252 (517)
116 PRK13943 protein-L-isoaspartat 98.6 5.1E-07 1.1E-11 86.5 11.0 75 155-238 80-156 (322)
117 PLN02366 spermidine synthase 98.5 2.2E-06 4.8E-11 81.6 15.1 81 155-241 91-175 (308)
118 KOG1499 Protein arginine N-met 98.5 2.5E-07 5.5E-12 88.6 8.5 76 154-238 59-134 (346)
119 PF05185 PRMT5: PRMT5 arginine 98.5 5.3E-07 1.2E-11 89.9 11.0 75 156-239 187-266 (448)
120 PF02353 CMAS: Mycolic acid cy 98.5 8.4E-07 1.8E-11 83.1 11.7 71 155-237 62-133 (273)
121 PRK11933 yebU rRNA (cytosine-C 98.5 4.4E-07 9.5E-12 91.0 10.4 81 155-243 113-195 (470)
122 COG4076 Predicted RNA methylas 98.5 1.7E-07 3.6E-12 83.2 5.6 77 133-218 16-92 (252)
123 PLN02233 ubiquinone biosynthes 98.5 1.4E-06 3.1E-11 80.7 11.6 76 155-238 73-152 (261)
124 PRK01581 speE spermidine synth 98.5 6.9E-07 1.5E-11 86.7 9.8 81 155-242 150-237 (374)
125 TIGR00740 methyltransferase, p 98.5 2E-06 4.4E-11 78.0 12.3 74 155-238 53-129 (239)
126 KOG2671 Putative RNA methylase 98.5 2E-07 4.2E-12 89.2 5.7 82 154-243 207-296 (421)
127 PRK15068 tRNA mo(5)U34 methylt 98.5 1.1E-06 2.5E-11 83.9 10.9 75 154-237 121-195 (322)
128 COG4122 Predicted O-methyltran 98.5 1.9E-06 4.2E-11 78.3 11.7 79 155-239 59-140 (219)
129 PLN02823 spermine synthase 98.5 4.3E-06 9.3E-11 80.6 14.6 78 155-239 103-184 (336)
130 COG2519 GCD14 tRNA(1-methylade 98.5 6.9E-07 1.5E-11 82.4 8.7 80 154-242 93-174 (256)
131 PRK11873 arsM arsenite S-adeno 98.5 1.2E-06 2.6E-11 80.9 10.4 77 155-240 77-155 (272)
132 PLN02589 caffeoyl-CoA O-methyl 98.4 3E-06 6.4E-11 78.4 12.8 85 155-240 79-165 (247)
133 PF10294 Methyltransf_16: Puta 98.4 7.4E-07 1.6E-11 77.8 8.1 85 154-243 44-132 (173)
134 PRK08317 hypothetical protein; 98.4 2.3E-06 4.9E-11 75.9 11.4 95 130-241 1-97 (241)
135 PRK00216 ubiE ubiquinone/menaq 98.4 1.5E-06 3.3E-11 77.4 10.3 76 155-238 51-128 (239)
136 TIGR00452 methyltransferase, p 98.4 1.4E-06 3.1E-11 83.2 10.6 76 154-238 120-195 (314)
137 PF03848 TehB: Tellurite resis 98.4 1.3E-06 2.9E-11 77.9 9.2 86 129-237 15-100 (192)
138 PRK04266 fibrillarin; Provisio 98.4 2E-06 4.2E-11 78.5 10.5 78 155-240 72-150 (226)
139 TIGR03587 Pse_Me-ase pseudamin 98.4 1.3E-06 2.8E-11 78.2 9.0 69 155-238 43-112 (204)
140 PF07021 MetW: Methionine bios 98.4 1.4E-06 2.9E-11 77.6 9.0 69 155-238 13-82 (193)
141 PRK14121 tRNA (guanine-N(7)-)- 98.4 1.8E-06 4E-11 84.5 10.7 80 155-241 122-202 (390)
142 PF01135 PCMT: Protein-L-isoas 98.4 1.8E-06 3.8E-11 77.9 9.6 92 136-243 60-153 (209)
143 PF08241 Methyltransf_11: Meth 98.4 9.9E-07 2.1E-11 66.9 6.5 67 160-238 1-67 (95)
144 PF08704 GCD14: tRNA methyltra 98.4 2.1E-06 4.6E-11 79.4 9.8 85 154-243 39-125 (247)
145 PRK10258 biotin biosynthesis p 98.4 1.5E-06 3.3E-11 79.2 8.8 73 155-242 42-114 (251)
146 PRK14103 trans-aconitate 2-met 98.3 1.9E-06 4.2E-11 79.0 8.7 72 155-243 29-101 (255)
147 PRK04148 hypothetical protein; 98.3 4.1E-06 8.9E-11 70.7 9.7 73 155-243 16-90 (134)
148 smart00828 PKS_MT Methyltransf 98.3 2.2E-06 4.8E-11 76.5 8.6 72 157-237 1-73 (224)
149 PRK05134 bifunctional 3-demeth 98.3 3.7E-06 8E-11 75.7 10.0 76 154-239 47-122 (233)
150 PRK01683 trans-aconitate 2-met 98.3 2.8E-06 6E-11 77.7 9.2 73 155-242 31-104 (258)
151 COG2230 Cfa Cyclopropane fatty 98.3 3.4E-06 7.4E-11 79.3 9.8 71 155-237 72-143 (283)
152 cd00315 Cyt_C5_DNA_methylase C 98.3 8.9E-07 1.9E-11 82.8 5.7 73 158-243 2-74 (275)
153 COG0030 KsgA Dimethyladenosine 98.3 4.2E-06 9.1E-11 77.8 9.9 78 155-243 30-107 (259)
154 COG2518 Pcm Protein-L-isoaspar 98.3 2.9E-06 6.2E-11 76.5 8.3 76 154-239 71-146 (209)
155 PLN02490 MPBQ/MSBQ methyltrans 98.3 6.6E-06 1.4E-10 79.4 11.3 95 130-242 94-189 (340)
156 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.3 8E-06 1.7E-10 76.8 11.6 83 154-243 84-168 (283)
157 PLN02336 phosphoethanolamine N 98.3 4E-06 8.7E-11 83.6 10.0 73 155-238 266-339 (475)
158 TIGR01983 UbiG ubiquinone bios 98.3 5.1E-06 1.1E-10 74.0 9.6 75 155-238 45-119 (224)
159 PLN03075 nicotianamine synthas 98.3 3.7E-06 8.1E-11 79.6 8.8 76 155-238 123-202 (296)
160 PRK05785 hypothetical protein; 98.3 7.2E-06 1.6E-10 74.5 10.4 68 155-239 51-118 (226)
161 TIGR02716 C20_methyl_CrtF C-20 98.2 6.8E-06 1.5E-10 77.4 9.9 61 155-217 149-210 (306)
162 PRK00050 16S rRNA m(4)C1402 me 98.2 1E-05 2.2E-10 76.8 10.7 82 155-243 19-102 (296)
163 PTZ00098 phosphoethanolamine N 98.2 9.2E-06 2E-10 75.4 10.3 72 155-238 52-124 (263)
164 TIGR02081 metW methionine bios 98.2 5E-06 1.1E-10 73.2 7.9 74 155-242 13-86 (194)
165 COG0144 Sun tRNA and rRNA cyto 98.2 7.9E-06 1.7E-10 79.3 9.7 84 154-243 155-241 (355)
166 TIGR01934 MenG_MenH_UbiE ubiqu 98.2 1.5E-05 3.2E-10 70.3 10.3 73 155-238 39-113 (223)
167 TIGR03840 TMPT_Se_Te thiopurin 98.2 5.7E-06 1.2E-10 74.7 7.6 74 155-236 34-118 (213)
168 COG3897 Predicted methyltransf 98.1 2.1E-06 4.5E-11 76.6 4.1 70 154-236 78-147 (218)
169 PRK06922 hypothetical protein; 98.1 1E-05 2.2E-10 83.8 9.6 80 155-242 418-498 (677)
170 PRK13255 thiopurine S-methyltr 98.1 7.4E-06 1.6E-10 74.2 7.8 74 155-236 37-121 (218)
171 TIGR02072 BioC biotin biosynth 98.1 1.9E-05 4E-10 70.2 10.1 73 155-240 34-107 (240)
172 PRK06202 hypothetical protein; 98.1 5.3E-06 1.1E-10 75.0 6.6 74 155-240 60-138 (232)
173 TIGR00478 tly hemolysin TlyA f 98.1 5.7E-06 1.2E-10 75.6 6.6 46 154-199 74-119 (228)
174 KOG0820 Ribosomal RNA adenine 98.1 1.1E-05 2.4E-10 75.3 8.3 79 154-243 57-135 (315)
175 PRK11188 rrmJ 23S rRNA methylt 98.1 1.1E-05 2.5E-10 72.4 8.0 75 155-243 51-130 (209)
176 PHA01634 hypothetical protein 98.1 7.8E-06 1.7E-10 68.5 6.3 75 153-239 26-100 (156)
177 PRK11705 cyclopropane fatty ac 98.1 2.3E-05 5E-10 76.8 10.4 70 155-240 167-237 (383)
178 PF08003 Methyltransf_9: Prote 98.1 1.5E-05 3.2E-10 75.7 8.7 75 154-237 114-188 (315)
179 PTZ00146 fibrillarin; Provisio 98.1 2.2E-05 4.8E-10 74.3 9.9 100 129-240 110-211 (293)
180 PF00398 RrnaAD: Ribosomal RNA 98.1 1.3E-05 2.8E-10 74.3 8.0 94 134-243 16-109 (262)
181 KOG1270 Methyltransferases [Co 98.1 5.4E-06 1.2E-10 76.9 5.4 71 155-237 89-164 (282)
182 PF05971 Methyltransf_10: Prot 98.1 1.2E-05 2.7E-10 76.1 7.9 138 100-244 46-190 (299)
183 TIGR03438 probable methyltrans 98.1 3.6E-05 7.8E-10 72.8 11.0 104 129-241 43-148 (301)
184 PLN02336 phosphoethanolamine N 98.0 1.2E-05 2.6E-10 80.1 8.0 78 155-242 37-114 (475)
185 KOG1271 Methyltransferases [Ge 98.0 8.1E-06 1.8E-10 72.3 5.5 61 157-218 69-130 (227)
186 KOG2915 tRNA(1-methyladenosine 97.9 6.9E-05 1.5E-09 70.0 10.4 120 113-242 52-188 (314)
187 PF01861 DUF43: Protein of unk 97.9 8.9E-05 1.9E-09 68.2 10.4 93 136-243 31-124 (243)
188 PF01564 Spermine_synth: Sperm 97.9 4.8E-05 1E-09 70.2 8.6 80 155-241 76-160 (246)
189 PF05401 NodS: Nodulation prot 97.9 2.7E-05 5.9E-10 69.7 6.6 71 155-238 43-113 (201)
190 PF13489 Methyltransf_23: Meth 97.9 0.00012 2.5E-09 61.0 9.8 39 154-194 21-59 (161)
191 PF08242 Methyltransf_12: Meth 97.9 1.5E-06 3.3E-11 67.8 -1.9 72 160-238 1-73 (99)
192 PRK11088 rrmA 23S rRNA methylt 97.9 0.00012 2.5E-09 68.1 10.3 69 155-237 85-157 (272)
193 TIGR00438 rrmJ cell division p 97.8 5.1E-05 1.1E-09 66.4 7.4 72 154-239 31-106 (188)
194 TIGR01444 fkbM_fam methyltrans 97.8 7.2E-05 1.6E-09 61.9 7.5 57 158-216 1-58 (143)
195 PF04816 DUF633: Family of unk 97.8 0.00011 2.4E-09 66.2 8.6 61 159-220 1-62 (205)
196 KOG1540 Ubiquinone biosynthesi 97.8 0.00018 3.8E-09 66.9 9.8 76 154-237 99-183 (296)
197 COG3963 Phospholipid N-methylt 97.8 0.00018 3.9E-09 63.0 9.2 99 129-243 29-129 (194)
198 KOG1227 Putative methyltransfe 97.8 6.1E-06 1.3E-10 77.8 0.1 76 154-238 193-269 (351)
199 PF00145 DNA_methylase: C-5 cy 97.7 8.1E-05 1.8E-09 69.3 7.5 72 158-243 2-73 (335)
200 PF01555 N6_N4_Mtase: DNA meth 97.7 0.00011 2.5E-09 64.5 7.4 55 133-197 177-231 (231)
201 PF02390 Methyltransf_4: Putat 97.7 0.00043 9.3E-09 61.7 10.6 77 156-238 18-95 (195)
202 PF04445 SAM_MT: Putative SAM- 97.6 6.8E-05 1.5E-09 68.8 4.6 79 157-243 77-163 (234)
203 KOG1663 O-methyltransferase [S 97.6 0.0011 2.5E-08 60.5 12.1 83 154-239 72-157 (237)
204 PF08123 DOT1: Histone methyla 97.6 0.00043 9.2E-09 62.4 9.3 78 155-239 42-130 (205)
205 smart00138 MeTrc Methyltransfe 97.5 0.00013 2.7E-09 67.9 5.6 73 123-199 68-152 (264)
206 KOG2078 tRNA modification enzy 97.5 5.1E-05 1.1E-09 74.6 2.9 64 155-220 249-313 (495)
207 COG0421 SpeE Spermidine syntha 97.5 0.0004 8.7E-09 65.5 8.9 75 157-238 78-156 (282)
208 KOG1253 tRNA methyltransferase 97.5 6.1E-05 1.3E-09 75.2 2.9 85 155-244 109-195 (525)
209 PF05724 TPMT: Thiopurine S-me 97.5 0.00015 3.3E-09 65.8 5.2 74 155-236 37-121 (218)
210 PF02527 GidB: rRNA small subu 97.5 0.0023 5E-08 56.7 12.4 93 133-237 28-121 (184)
211 PRK13256 thiopurine S-methyltr 97.5 0.00028 6E-09 64.6 6.6 75 155-236 43-129 (226)
212 COG0286 HsdM Type I restrictio 97.5 0.00033 7.3E-09 70.7 7.8 104 130-243 168-276 (489)
213 PF11599 AviRa: RRNA methyltra 97.4 0.0047 1E-07 56.3 13.1 153 118-281 19-241 (246)
214 COG0270 Dcm Site-specific DNA 97.4 0.00042 9.1E-09 66.4 6.7 76 156-243 3-79 (328)
215 TIGR00675 dcm DNA-methyltransf 97.3 0.00035 7.5E-09 66.6 6.0 71 159-243 1-71 (315)
216 COG0357 GidB Predicted S-adeno 97.3 0.0017 3.7E-08 59.0 9.7 94 130-237 44-141 (215)
217 PRK11524 putative methyltransf 97.3 0.00091 2E-08 62.7 8.1 46 154-201 207-252 (284)
218 COG4106 Tam Trans-aconitate me 97.3 0.00041 8.9E-09 63.1 5.2 73 155-242 30-103 (257)
219 PRK13699 putative methylase; P 97.2 0.0014 3.1E-08 59.7 8.5 46 155-202 163-208 (227)
220 PRK11760 putative 23S rRNA C24 97.2 0.00078 1.7E-08 65.1 6.7 69 154-239 210-278 (357)
221 TIGR00006 S-adenosyl-methyltra 97.1 0.0063 1.4E-07 58.1 11.7 84 155-243 20-104 (305)
222 COG4976 Predicted methyltransf 97.1 0.00013 2.8E-09 66.9 -0.1 75 156-243 126-202 (287)
223 KOG1122 tRNA and rRNA cytosine 97.0 0.0018 3.8E-08 63.9 7.2 122 114-243 196-324 (460)
224 COG4262 Predicted spermidine s 97.0 0.0044 9.6E-08 60.4 9.4 81 155-242 289-376 (508)
225 PRK10458 DNA cytosine methylas 97.0 0.0021 4.4E-08 64.8 7.5 83 156-242 88-180 (467)
226 KOG1661 Protein-L-isoaspartate 97.0 0.0021 4.6E-08 58.2 6.6 90 136-238 68-169 (237)
227 PF12147 Methyltransf_20: Puta 96.9 0.013 2.9E-07 55.5 11.9 80 155-239 135-217 (311)
228 COG0220 Predicted S-adenosylme 96.8 0.01 2.2E-07 54.4 10.0 76 157-238 50-126 (227)
229 KOG1501 Arginine N-methyltrans 96.8 0.0024 5.1E-08 63.5 6.1 55 157-212 68-122 (636)
230 COG2384 Predicted SAM-dependen 96.8 0.0065 1.4E-07 55.3 8.5 74 156-237 17-91 (226)
231 KOG4058 Uncharacterized conser 96.8 0.0013 2.9E-08 56.7 3.6 88 119-218 47-134 (199)
232 PF13679 Methyltransf_32: Meth 96.7 0.0055 1.2E-07 51.4 7.1 59 155-214 25-90 (141)
233 COG1189 Predicted rRNA methyla 96.7 0.0013 2.8E-08 60.5 3.4 80 152-243 76-156 (245)
234 KOG1541 Predicted protein carb 96.7 0.0031 6.7E-08 57.7 5.6 68 155-236 50-117 (270)
235 TIGR00497 hsdM type I restrict 96.6 0.0053 1.1E-07 62.1 7.5 83 155-243 217-305 (501)
236 COG1568 Predicted methyltransf 96.6 0.0048 1E-07 58.1 6.4 83 153-243 150-233 (354)
237 PF00891 Methyltransf_2: O-met 96.5 0.0076 1.6E-07 54.6 6.6 63 156-237 101-164 (241)
238 PF03291 Pox_MCEL: mRNA cappin 96.4 0.019 4.2E-07 55.3 9.3 101 136-240 45-154 (331)
239 KOG4300 Predicted methyltransf 96.3 0.011 2.4E-07 53.7 6.7 94 134-238 58-152 (252)
240 PF13578 Methyltransf_24: Meth 96.2 0.0053 1.2E-07 48.4 3.8 74 160-240 1-78 (106)
241 KOG2899 Predicted methyltransf 96.1 0.0078 1.7E-07 55.8 4.9 48 154-202 57-105 (288)
242 PRK00536 speE spermidine synth 96.0 0.044 9.5E-07 51.3 9.4 124 101-243 23-151 (262)
243 PRK01544 bifunctional N5-gluta 96.0 0.039 8.4E-07 56.1 9.6 79 155-240 347-426 (506)
244 PF04378 RsmJ: Ribosomal RNA s 95.8 0.021 4.5E-07 53.0 6.1 77 160-244 62-138 (245)
245 PF01795 Methyltransf_5: MraW 95.7 0.053 1.2E-06 51.9 8.8 84 155-242 20-104 (310)
246 KOG3010 Methyltransferase [Gen 95.7 0.011 2.3E-07 54.7 3.9 58 129-197 15-73 (261)
247 PF09243 Rsm22: Mitochondrial 95.6 0.054 1.2E-06 50.7 8.0 61 136-200 17-79 (274)
248 COG2961 ComJ Protein involved 95.5 0.09 2E-06 48.9 9.1 94 136-244 76-169 (279)
249 PF05891 Methyltransf_PK: AdoM 95.4 0.033 7.1E-07 50.7 5.9 75 155-238 55-129 (218)
250 COG1743 Adenine-specific DNA m 95.0 0.022 4.7E-07 60.1 3.7 46 154-201 89-134 (875)
251 PF03059 NAS: Nicotianamine sy 94.9 0.039 8.5E-07 52.0 4.8 76 156-239 121-200 (276)
252 COG0275 Predicted S-adenosylme 94.8 0.41 8.9E-06 45.8 11.4 82 154-240 22-105 (314)
253 KOG2912 Predicted DNA methylas 94.5 0.044 9.5E-07 52.7 4.3 81 159-243 106-190 (419)
254 PF01728 FtsJ: FtsJ-like methy 94.4 0.036 7.8E-07 48.0 3.1 35 155-189 23-59 (181)
255 COG0863 DNA modification methy 94.1 0.24 5.2E-06 45.8 8.2 47 154-202 221-267 (302)
256 PRK11524 putative methyltransf 94.1 0.046 1E-06 51.2 3.4 31 208-243 9-39 (284)
257 KOG2198 tRNA cytosine-5-methyl 94.0 0.13 2.9E-06 50.1 6.5 88 155-244 155-249 (375)
258 PRK13699 putative methylase; P 93.9 0.046 9.9E-07 49.9 3.0 30 209-243 3-32 (227)
259 COG0293 FtsJ 23S rRNA methylas 93.8 0.2 4.4E-06 45.2 6.9 75 155-243 45-123 (205)
260 PF02086 MethyltransfD12: D12 93.5 0.07 1.5E-06 48.4 3.5 36 155-191 20-55 (260)
261 KOG1975 mRNA cap methyltransfe 93.4 0.36 7.8E-06 46.7 8.1 82 155-239 117-204 (389)
262 PF07091 FmrO: Ribosomal RNA m 93.2 0.32 6.9E-06 45.3 7.2 58 156-216 106-164 (251)
263 PF06080 DUF938: Protein of un 93.1 0.24 5.2E-06 44.8 6.1 83 130-217 4-87 (204)
264 COG3129 Predicted SAM-dependen 93.1 0.5 1.1E-05 43.9 8.1 116 120-243 42-165 (292)
265 PF01269 Fibrillarin: Fibrilla 93.0 0.88 1.9E-05 41.8 9.7 100 129-240 51-152 (229)
266 KOG1201 Hydroxysteroid 17-beta 92.9 0.56 1.2E-05 44.7 8.5 82 153-239 35-122 (300)
267 PF10237 N6-adenineMlase: Prob 92.8 0.48 1E-05 41.2 7.4 74 155-243 25-98 (162)
268 PF05219 DREV: DREV methyltran 92.7 0.18 3.9E-06 47.2 4.8 36 155-191 94-129 (265)
269 KOG2361 Predicted methyltransf 92.3 0.1 2.3E-06 48.3 2.8 45 158-203 74-121 (264)
270 TIGR03439 methyl_EasF probable 92.3 1.1 2.4E-05 43.1 9.9 90 124-220 51-146 (319)
271 KOG1709 Guanidinoacetate methy 91.7 0.95 2E-05 41.7 8.1 91 130-241 88-178 (271)
272 KOG2920 Predicted methyltransf 90.1 0.23 5E-06 46.9 2.8 38 154-191 115-152 (282)
273 PF07279 DUF1442: Protein of u 90.0 3.9 8.4E-05 37.4 10.4 76 155-239 41-123 (218)
274 KOG0822 Protein kinase inhibit 89.6 0.75 1.6E-05 47.1 6.1 79 137-219 349-434 (649)
275 PLN02232 ubiquinone biosynthes 87.9 1.1 2.4E-05 38.2 5.3 49 182-238 1-51 (160)
276 COG1889 NOP1 Fibrillarin-like 87.5 3.2 6.9E-05 37.9 8.1 100 129-240 54-154 (231)
277 COG0500 SmtA SAM-dependent met 87.5 3 6.6E-05 31.4 7.1 74 159-241 52-129 (257)
278 KOG2352 Predicted spermine/spe 87.5 0.45 9.7E-06 48.1 2.9 81 156-238 296-377 (482)
279 KOG3201 Uncharacterized conser 87.2 0.79 1.7E-05 40.4 3.9 80 154-237 28-109 (201)
280 KOG0024 Sorbitol dehydrogenase 85.3 3.9 8.5E-05 39.7 7.9 46 155-205 169-216 (354)
281 PF06962 rRNA_methylase: Putat 85.1 2.5 5.5E-05 36.0 5.9 59 180-244 1-59 (140)
282 KOG2793 Putative N2,N2-dimethy 84.9 1.4 3E-05 41.0 4.6 46 156-203 87-132 (248)
283 TIGR00571 dam DNA adenine meth 84.8 0.85 1.8E-05 42.4 3.2 28 208-242 156-183 (266)
284 PF05050 Methyltransf_21: Meth 82.9 2.8 6.2E-05 34.5 5.3 51 161-212 1-58 (167)
285 PRK10904 DNA adenine methylase 82.3 1.3 2.7E-05 41.4 3.3 28 208-242 158-185 (271)
286 COG3392 Adenine-specific DNA m 80.7 1.1 2.4E-05 42.2 2.2 35 154-189 26-60 (330)
287 KOG0919 C-5 cytosine-specific 80.0 1.7 3.8E-05 40.6 3.2 76 156-242 3-80 (338)
288 KOG3115 Methyltransferase-like 79.7 2.8 6E-05 38.3 4.3 83 156-243 61-153 (249)
289 PRK01747 mnmC bifunctional tRN 79.3 4.7 0.0001 42.2 6.6 110 127-243 25-180 (662)
290 PRK05854 short chain dehydroge 79.2 24 0.00052 33.0 10.8 84 154-240 12-102 (313)
291 KOG2940 Predicted methyltransf 79.1 4.1 9E-05 38.0 5.3 41 156-197 73-113 (325)
292 PRK07102 short chain dehydroge 79.0 16 0.00035 32.2 9.2 80 158-241 3-86 (243)
293 PF02086 MethyltransfD12: D12 78.4 1.5 3.3E-05 39.6 2.4 30 208-243 160-189 (260)
294 PRK08644 thiamine biosynthesis 78.4 27 0.00059 31.3 10.4 97 130-236 4-122 (212)
295 PTZ00357 methyltransferase; Pr 78.0 4.3 9.4E-05 43.2 5.7 62 157-219 702-776 (1072)
296 COG3392 Adenine-specific DNA m 77.5 1.1 2.4E-05 42.3 1.1 31 209-247 189-219 (330)
297 PRK07063 short chain dehydroge 77.4 28 0.00062 31.0 10.4 84 154-240 5-95 (260)
298 PF01739 CheR: CheR methyltran 76.7 5.6 0.00012 35.5 5.4 42 155-197 31-82 (196)
299 PRK05867 short chain dehydroge 76.5 23 0.0005 31.5 9.5 83 154-241 7-96 (253)
300 COG0338 Dam Site-specific DNA 76.3 2.2 4.7E-05 40.3 2.8 29 208-243 157-186 (274)
301 PRK08339 short chain dehydroge 76.1 32 0.0007 31.1 10.5 81 154-239 6-93 (263)
302 PRK06172 short chain dehydroge 75.8 31 0.00068 30.5 10.1 83 154-241 5-94 (253)
303 KOG0022 Alcohol dehydrogenase, 75.1 3.9 8.5E-05 39.6 4.2 44 155-205 192-239 (375)
304 PRK07062 short chain dehydroge 75.1 31 0.00068 30.8 10.0 85 154-241 6-97 (265)
305 PLN03209 translocon at the inn 74.1 20 0.00044 37.3 9.4 77 156-239 80-167 (576)
306 PF07942 N2227: N2227-like pro 73.7 11 0.00025 35.4 6.9 44 155-202 56-99 (270)
307 KOG3178 Hydroxyindole-O-methyl 73.6 5.3 0.00012 38.9 4.7 42 157-200 179-220 (342)
308 COG1179 Dinucleotide-utilizing 73.6 6.5 0.00014 36.7 5.1 37 155-191 29-67 (263)
309 PF03141 Methyltransf_29: Puta 73.5 9 0.0002 39.1 6.5 22 158-179 120-141 (506)
310 PRK12475 thiamine/molybdopteri 73.4 20 0.00044 34.6 8.7 35 154-188 22-58 (338)
311 PF00106 adh_short: short chai 73.4 24 0.00052 28.9 8.2 79 162-243 5-92 (167)
312 PRK06914 short chain dehydroge 73.0 39 0.00086 30.4 10.2 82 157-241 4-91 (280)
313 PRK09242 tropinone reductase; 72.4 42 0.00091 29.8 10.1 85 154-241 7-98 (257)
314 KOG1562 Spermidine synthase [A 72.3 12 0.00026 36.1 6.6 80 154-239 120-203 (337)
315 cd00755 YgdL_like Family of ac 72.0 21 0.00045 32.7 8.0 34 155-188 10-45 (231)
316 KOG2360 Proliferation-associat 72.0 6.8 0.00015 38.8 5.1 84 154-244 212-297 (413)
317 PF02719 Polysacc_synt_2: Poly 71.9 12 0.00026 35.7 6.7 78 163-243 4-89 (293)
318 PRK06125 short chain dehydroge 71.4 42 0.00092 29.9 9.9 82 154-240 5-90 (259)
319 PRK07904 short chain dehydroge 71.2 33 0.00072 30.9 9.3 82 156-241 8-97 (253)
320 KOG1099 SAM-dependent methyltr 71.1 4.6 9.9E-05 37.6 3.4 70 157-239 43-123 (294)
321 PF01555 N6_N4_Mtase: DNA meth 69.8 2.8 6E-05 36.4 1.8 15 232-246 1-15 (231)
322 PF07015 VirC1: VirC1 protein; 69.3 15 0.00033 33.9 6.5 69 169-240 22-92 (231)
323 TIGR03499 FlhF flagellar biosy 69.3 37 0.0008 31.7 9.3 59 174-240 219-281 (282)
324 PRK06139 short chain dehydroge 69.3 49 0.0011 31.5 10.3 83 154-241 5-94 (330)
325 COG1565 Uncharacterized conser 69.1 25 0.00053 34.7 8.2 63 135-202 61-132 (370)
326 PF07669 Eco57I: Eco57I restri 68.8 2.8 6.1E-05 33.4 1.5 14 231-244 2-15 (106)
327 PRK15116 sulfur acceptor prote 68.8 42 0.00091 31.5 9.5 35 154-188 28-64 (268)
328 PRK06124 gluconate 5-dehydroge 68.7 59 0.0013 28.8 10.2 83 154-241 9-98 (256)
329 PF11899 DUF3419: Protein of u 68.5 10 0.00022 37.4 5.6 44 155-200 35-78 (380)
330 PRK08862 short chain dehydroge 68.2 46 0.00099 29.6 9.4 82 154-239 3-91 (227)
331 TIGR02356 adenyl_thiF thiazole 67.8 32 0.00069 30.5 8.2 34 154-187 19-54 (202)
332 TIGR00571 dam DNA adenine meth 67.5 10 0.00022 35.2 5.1 32 157-191 27-58 (266)
333 PRK06949 short chain dehydroge 67.4 66 0.0014 28.4 10.3 83 154-241 7-96 (258)
334 PRK07035 short chain dehydroge 67.3 73 0.0016 28.1 10.5 83 154-241 6-95 (252)
335 cd00757 ThiF_MoeB_HesA_family 67.1 35 0.00075 30.7 8.4 77 154-237 19-117 (228)
336 PRK10611 chemotaxis methyltran 66.8 12 0.00025 35.6 5.4 42 156-198 116-166 (287)
337 KOG3350 Uncharacterized conser 66.5 2.6 5.7E-05 37.6 0.9 74 155-244 73-148 (217)
338 COG1062 AdhC Zn-dependent alco 66.4 8.3 0.00018 37.7 4.3 49 139-197 176-228 (366)
339 PRK05875 short chain dehydroge 66.4 63 0.0014 29.0 10.0 83 154-239 5-94 (276)
340 PRK06197 short chain dehydroge 66.1 72 0.0016 29.4 10.6 84 154-240 14-104 (306)
341 PLN02780 ketoreductase/ oxidor 66.0 37 0.00079 32.1 8.7 59 155-216 52-114 (320)
342 PF04989 CmcI: Cephalosporin h 65.9 18 0.0004 32.7 6.2 82 155-240 32-120 (206)
343 cd01487 E1_ThiF_like E1_ThiF_l 65.5 35 0.00076 29.5 7.8 30 159-188 2-33 (174)
344 PRK05876 short chain dehydroge 65.5 73 0.0016 29.0 10.4 83 154-241 4-93 (275)
345 PRK09880 L-idonate 5-dehydroge 65.1 24 0.00053 33.2 7.3 40 155-197 169-212 (343)
346 PRK08589 short chain dehydroge 65.1 64 0.0014 29.2 9.8 83 154-242 4-93 (272)
347 PRK07890 short chain dehydroge 65.0 88 0.0019 27.6 10.6 81 155-240 4-91 (258)
348 PRK07688 thiamine/molybdopteri 64.9 40 0.00086 32.6 8.8 34 154-187 22-57 (339)
349 COG0863 DNA modification methy 64.6 5.1 0.00011 36.9 2.5 33 208-245 17-49 (302)
350 PRK07533 enoyl-(acyl carrier p 64.5 55 0.0012 29.4 9.2 83 154-241 8-98 (258)
351 PRK08945 putative oxoacyl-(acy 64.1 68 0.0015 28.3 9.7 82 154-239 10-100 (247)
352 PF00107 ADH_zinc_N: Zinc-bind 64.0 14 0.0003 29.3 4.7 63 165-240 1-67 (130)
353 PRK06194 hypothetical protein; 63.3 75 0.0016 28.7 10.0 84 154-242 4-94 (287)
354 PRK08277 D-mannonate oxidoredu 62.8 91 0.002 28.0 10.4 82 154-240 8-96 (278)
355 PRK07097 gluconate 5-dehydroge 62.6 76 0.0016 28.4 9.8 84 154-242 8-98 (265)
356 PRK08267 short chain dehydroge 61.8 49 0.0011 29.4 8.3 78 158-242 3-88 (260)
357 KOG2356 Transcriptional activa 61.8 6.3 0.00014 37.8 2.5 71 157-243 126-196 (366)
358 PRK08303 short chain dehydroge 61.6 64 0.0014 30.2 9.4 81 154-239 6-103 (305)
359 PRK07576 short chain dehydroge 61.6 88 0.0019 28.1 10.1 81 154-239 7-94 (264)
360 PRK07109 short chain dehydroge 60.9 84 0.0018 29.8 10.2 82 155-241 7-95 (334)
361 PRK06720 hypothetical protein; 60.5 1.1E+02 0.0024 26.3 10.3 83 154-241 14-103 (169)
362 PRK08217 fabG 3-ketoacyl-(acyl 60.1 1.2E+02 0.0025 26.5 10.4 83 154-241 3-92 (253)
363 cd01485 E1-1_like Ubiquitin ac 60.0 75 0.0016 28.1 9.0 31 155-187 18-52 (198)
364 PRK05866 short chain dehydroge 59.9 1.1E+02 0.0023 28.4 10.5 82 154-240 38-126 (293)
365 PRK07478 short chain dehydroge 59.7 1E+02 0.0022 27.3 10.0 83 154-241 4-93 (254)
366 PRK08251 short chain dehydroge 59.5 1.1E+02 0.0023 26.8 10.1 82 157-241 3-91 (248)
367 PRK05703 flhF flagellar biosyn 59.3 88 0.0019 31.2 10.3 57 176-240 249-308 (424)
368 PRK07231 fabG 3-ketoacyl-(acyl 59.0 86 0.0019 27.4 9.3 81 155-241 4-91 (251)
369 PF01488 Shikimate_DH: Shikima 58.9 66 0.0014 26.4 8.0 76 154-243 10-87 (135)
370 KOG0821 Predicted ribosomal RN 58.2 24 0.00051 32.9 5.5 63 154-219 49-111 (326)
371 PF05063 MT-A70: MT-A70 ; Int 58.0 5.5 0.00012 34.6 1.4 13 232-244 1-13 (176)
372 COG1352 CheR Methylase of chem 58.0 19 0.00042 33.8 5.1 59 134-197 79-147 (268)
373 PRK08703 short chain dehydroge 57.8 1.2E+02 0.0025 26.6 10.0 81 154-240 4-96 (239)
374 PRK07831 short chain dehydroge 57.8 1.3E+02 0.0027 26.9 10.3 84 155-241 16-107 (262)
375 PF07757 AdoMet_MTase: Predict 57.8 10 0.00023 31.1 2.8 34 156-190 59-92 (112)
376 PRK07814 short chain dehydroge 57.7 1.1E+02 0.0024 27.3 10.0 82 154-240 8-96 (263)
377 TIGR03206 benzo_BadH 2-hydroxy 57.5 1.2E+02 0.0027 26.4 10.1 81 156-241 3-90 (250)
378 PRK13849 putative crown gall t 57.5 32 0.0007 31.2 6.4 21 169-190 22-42 (231)
379 PRK05717 oxidoreductase; Valid 57.2 94 0.002 27.5 9.3 81 154-242 8-95 (255)
380 COG2933 Predicted SAM-dependen 57.0 24 0.00053 33.6 5.5 100 121-239 178-278 (358)
381 COG1064 AdhP Zn-dependent alco 57.0 59 0.0013 31.7 8.4 71 155-240 166-238 (339)
382 PRK07523 gluconate 5-dehydroge 56.7 1.2E+02 0.0025 26.9 9.9 83 154-241 8-97 (255)
383 PRK12384 sorbitol-6-phosphate 56.4 1.1E+02 0.0025 26.9 9.8 82 157-241 3-91 (259)
384 PHA02518 ParA-like protein; Pr 56.4 24 0.00052 30.4 5.2 19 171-190 23-41 (211)
385 COG1063 Tdh Threonine dehydrog 56.2 17 0.00037 35.0 4.6 40 155-197 168-211 (350)
386 PRK08762 molybdopterin biosynt 56.2 50 0.0011 32.1 7.9 34 154-187 133-168 (376)
387 PRK07792 fabG 3-ketoacyl-(acyl 56.1 1.1E+02 0.0023 28.5 9.9 82 154-241 10-99 (306)
388 cd01492 Aos1_SUMO Ubiquitin ac 56.0 85 0.0018 27.7 8.7 76 154-238 19-117 (197)
389 KOG2651 rRNA adenine N-6-methy 55.5 47 0.001 33.2 7.3 39 156-196 154-193 (476)
390 PRK12826 3-ketoacyl-(acyl-carr 55.4 1.1E+02 0.0023 26.7 9.3 83 155-242 5-94 (251)
391 PRK05597 molybdopterin biosynt 55.4 56 0.0012 31.7 8.0 35 154-188 26-62 (355)
392 PRK07454 short chain dehydroge 55.3 1.3E+02 0.0028 26.3 9.8 81 156-241 6-93 (241)
393 PRK08265 short chain dehydroge 54.9 1E+02 0.0022 27.6 9.3 80 154-241 4-90 (261)
394 PRK07791 short chain dehydroge 54.8 1E+02 0.0023 28.2 9.4 83 154-241 4-102 (286)
395 PRK06198 short chain dehydroge 54.8 1.1E+02 0.0025 26.9 9.5 83 154-240 4-93 (260)
396 COG1086 Predicted nucleoside-d 54.6 66 0.0014 33.6 8.6 87 154-244 248-338 (588)
397 PRK12548 shikimate 5-dehydroge 54.2 1.3E+02 0.0028 28.1 10.1 81 154-243 124-211 (289)
398 PRK06138 short chain dehydroge 54.0 1.4E+02 0.0031 26.0 9.9 83 154-242 3-92 (252)
399 PRK08594 enoyl-(acyl carrier p 53.9 1.2E+02 0.0025 27.4 9.5 85 154-241 5-97 (257)
400 PRK06200 2,3-dihydroxy-2,3-dih 53.8 1.2E+02 0.0026 27.0 9.5 80 154-241 4-90 (263)
401 PRK08328 hypothetical protein; 53.6 78 0.0017 28.7 8.2 35 154-188 25-61 (231)
402 cd08283 FDH_like_1 Glutathione 53.5 31 0.00068 33.2 6.0 43 155-198 184-228 (386)
403 cd01483 E1_enzyme_family Super 53.4 1.1E+02 0.0025 24.9 8.6 23 165-187 6-32 (143)
404 PRK07677 short chain dehydroge 53.3 72 0.0016 28.2 7.9 78 157-239 2-86 (252)
405 PRK07666 fabG 3-ketoacyl-(acyl 53.1 1.5E+02 0.0034 25.7 10.4 82 155-241 6-94 (239)
406 PRK09186 flagellin modificatio 53.1 1.3E+02 0.0029 26.3 9.6 82 155-239 3-91 (256)
407 KOG3924 Putative protein methy 53.0 20 0.00043 35.7 4.4 79 155-238 192-279 (419)
408 PRK07326 short chain dehydroge 52.9 1.4E+02 0.003 25.9 9.5 79 155-239 5-90 (237)
409 cd08281 liver_ADH_like1 Zinc-d 52.8 65 0.0014 30.7 8.0 40 155-197 191-234 (371)
410 PRK14106 murD UDP-N-acetylmura 52.2 67 0.0014 31.6 8.1 71 154-241 3-78 (450)
411 cd05564 PTS_IIB_chitobiose_lic 51.9 40 0.00087 26.3 5.3 38 195-241 19-56 (96)
412 KOG0725 Reductases with broad 51.9 1.8E+02 0.0038 27.1 10.5 88 154-243 6-101 (270)
413 PLN02253 xanthoxin dehydrogena 51.8 1.4E+02 0.003 26.9 9.6 81 154-240 16-103 (280)
414 PRK06113 7-alpha-hydroxysteroi 51.4 1.6E+02 0.0035 26.0 9.9 83 154-241 9-98 (255)
415 cd01489 Uba2_SUMO Ubiquitin ac 51.2 69 0.0015 30.8 7.8 24 165-188 6-33 (312)
416 PF00072 Response_reg: Respons 50.9 62 0.0013 24.3 6.2 50 181-238 1-50 (112)
417 PRK08085 gluconate 5-dehydroge 50.7 1.7E+02 0.0037 25.8 10.0 83 154-241 7-96 (254)
418 PRK05650 short chain dehydroge 50.6 1.7E+02 0.0036 26.2 10.0 79 158-241 2-87 (270)
419 PRK09291 short chain dehydroge 50.2 1.7E+02 0.0037 25.6 9.9 76 158-241 4-83 (257)
420 PF01234 NNMT_PNMT_TEMT: NNMT/ 50.2 22 0.00047 33.3 4.1 45 154-199 55-99 (256)
421 PF02636 Methyltransf_28: Puta 50.2 22 0.00047 32.5 4.0 45 156-201 19-72 (252)
422 cd01484 E1-2_like Ubiquitin ac 49.5 1.1E+02 0.0023 28.1 8.5 25 165-189 6-34 (234)
423 COG1748 LYS9 Saccharopine dehy 49.4 78 0.0017 31.5 8.0 73 158-242 3-79 (389)
424 PRK07024 short chain dehydroge 49.2 1.3E+02 0.0029 26.6 9.0 76 158-239 4-86 (257)
425 PRK06057 short chain dehydroge 49.0 1.3E+02 0.0028 26.7 8.9 78 154-241 5-89 (255)
426 KOG1098 Putative SAM-dependent 48.8 23 0.00051 37.3 4.3 54 136-189 25-80 (780)
427 cd01488 Uba3_RUB Ubiquitin act 48.8 76 0.0017 30.2 7.6 67 165-237 6-94 (291)
428 TIGR01832 kduD 2-deoxy-D-gluco 48.8 1.7E+02 0.0038 25.5 9.6 81 154-241 3-90 (248)
429 PRK07060 short chain dehydroge 48.8 1.3E+02 0.0027 26.2 8.7 78 154-242 7-88 (245)
430 PRK12429 3-hydroxybutyrate deh 48.6 87 0.0019 27.4 7.6 82 155-241 3-91 (258)
431 PLN02740 Alcohol dehydrogenase 48.5 94 0.002 29.8 8.4 40 155-197 198-241 (381)
432 PRK12823 benD 1,6-dihydroxycyc 48.2 1.7E+02 0.0037 25.8 9.5 80 154-239 6-92 (260)
433 PRK05600 thiamine biosynthesis 48.2 96 0.0021 30.4 8.4 34 154-187 39-74 (370)
434 PRK08340 glucose-1-dehydrogena 48.2 1.3E+02 0.0028 26.8 8.8 76 159-240 3-85 (259)
435 PRK12939 short chain dehydroge 48.1 1E+02 0.0022 26.9 8.0 81 154-239 5-92 (250)
436 PRK05872 short chain dehydroge 47.8 1.2E+02 0.0026 27.9 8.7 82 154-241 7-95 (296)
437 PRK10904 DNA adenine methylase 47.8 26 0.00057 32.6 4.3 32 157-191 29-60 (271)
438 KOG4589 Cell division protein 47.6 29 0.00063 31.5 4.2 76 155-243 69-148 (232)
439 KOG1269 SAM-dependent methyltr 47.5 23 0.0005 34.8 4.0 59 155-214 110-168 (364)
440 PF04672 Methyltransf_19: S-ad 47.1 25 0.00053 33.2 3.9 62 157-220 70-135 (267)
441 TIGR03451 mycoS_dep_FDH mycoth 46.9 1E+02 0.0023 29.1 8.3 39 155-196 176-218 (358)
442 PRK06079 enoyl-(acyl carrier p 46.7 1.6E+02 0.0035 26.2 9.2 82 154-242 5-94 (252)
443 PRK12481 2-deoxy-D-gluconate 3 46.3 1.7E+02 0.0036 26.0 9.2 81 154-241 6-93 (251)
444 PRK05690 molybdopterin biosynt 46.2 1.3E+02 0.0028 27.5 8.5 35 154-188 30-66 (245)
445 PRK05599 hypothetical protein; 46.2 1.7E+02 0.0037 25.9 9.2 79 159-241 3-87 (246)
446 PRK07832 short chain dehydroge 46.0 1.4E+02 0.0031 26.7 8.8 76 163-241 6-88 (272)
447 PRK06505 enoyl-(acyl carrier p 45.8 1.5E+02 0.0032 27.0 8.9 82 154-240 5-94 (271)
448 KOG2352 Predicted spermine/spe 45.3 52 0.0011 33.6 6.1 69 158-236 51-119 (482)
449 PRK07889 enoyl-(acyl carrier p 45.0 1.2E+02 0.0026 27.2 8.0 81 154-241 5-95 (256)
450 PF05430 Methyltransf_30: S-ad 44.9 26 0.00057 29.0 3.4 28 208-242 33-60 (124)
451 PRK13394 3-hydroxybutyrate deh 44.9 1E+02 0.0023 27.1 7.6 83 154-241 5-94 (262)
452 cd02037 MRP-like MRP (Multiple 44.8 23 0.00049 30.0 3.1 56 173-243 24-79 (169)
453 PRK06935 2-deoxy-D-gluconate 3 44.7 2.2E+02 0.0048 25.1 9.7 83 154-242 13-102 (258)
454 KOG1205 Predicted dehydrogenas 44.4 1.4E+02 0.0031 28.3 8.6 88 154-243 10-103 (282)
455 TIGR03325 BphB_TodD cis-2,3-di 44.3 1.7E+02 0.0037 26.0 8.9 77 155-239 4-87 (262)
456 PRK08416 7-alpha-hydroxysteroi 44.0 2E+02 0.0043 25.6 9.3 81 154-239 6-95 (260)
457 PRK08264 short chain dehydroge 43.2 1.5E+02 0.0033 25.7 8.3 75 155-241 5-83 (238)
458 PRK07825 short chain dehydroge 43.1 2.1E+02 0.0045 25.6 9.3 79 154-241 3-88 (273)
459 PRK10037 cell division protein 42.9 1.2E+02 0.0027 27.3 7.9 14 230-243 116-129 (250)
460 PRK01710 murD UDP-N-acetylmura 42.3 93 0.002 31.0 7.5 73 154-241 12-87 (458)
461 cd01491 Ube1_repeat1 Ubiquitin 42.1 1.3E+02 0.0028 28.5 8.0 32 155-188 18-53 (286)
462 PRK07074 short chain dehydroge 42.0 2.2E+02 0.0049 25.0 9.3 77 158-241 4-87 (257)
463 COG4017 Uncharacterized protei 41.9 36 0.00079 31.0 3.9 70 130-201 19-89 (254)
464 PRK07453 protochlorophyllide o 41.7 2.7E+02 0.0059 25.8 10.2 81 155-240 5-92 (322)
465 PRK05855 short chain dehydroge 41.3 2.1E+02 0.0045 28.4 9.9 83 154-241 313-402 (582)
466 TIGR01963 PHB_DH 3-hydroxybuty 41.2 2.2E+02 0.0047 24.8 9.0 73 163-239 7-86 (255)
467 cd08300 alcohol_DH_class_III c 41.1 1.7E+02 0.0036 27.8 8.8 39 155-196 186-228 (368)
468 PRK05565 fabG 3-ketoacyl-(acyl 41.0 1.2E+02 0.0025 26.4 7.2 83 155-242 4-94 (247)
469 PRK07774 short chain dehydroge 41.0 2.4E+02 0.0053 24.5 9.7 83 154-241 4-93 (250)
470 PRK07201 short chain dehydroge 40.9 2E+02 0.0044 29.5 9.9 83 154-241 369-458 (657)
471 COG5459 Predicted rRNA methyla 40.8 26 0.00057 34.7 3.1 47 153-202 111-160 (484)
472 PRK06101 short chain dehydroge 40.8 1.6E+02 0.0034 25.9 8.0 71 162-240 6-80 (240)
473 PLN02668 indole-3-acetate carb 40.5 19 0.00041 35.7 2.2 20 156-175 64-83 (386)
474 TIGR02632 RhaD_aldol-ADH rhamn 40.0 2.6E+02 0.0056 29.6 10.6 84 154-241 412-503 (676)
475 TIGR02354 thiF_fam2 thiamine b 40.0 2E+02 0.0044 25.5 8.5 32 154-187 19-54 (200)
476 TIGR01289 LPOR light-dependent 40.0 2.6E+02 0.0057 26.0 9.8 82 156-241 3-91 (314)
477 PF02254 TrkA_N: TrkA-N domain 39.9 58 0.0013 25.3 4.6 66 163-240 3-71 (116)
478 PRK06196 oxidoreductase; Provi 39.5 2.9E+02 0.0063 25.5 10.0 79 154-241 24-109 (315)
479 cd05278 FDH_like Formaldehyde 39.3 1.6E+02 0.0035 27.2 8.2 40 155-197 167-210 (347)
480 PF07652 Flavi_DEAD: Flaviviru 39.3 1.9E+02 0.0041 24.9 7.8 35 156-191 5-46 (148)
481 PRK08213 gluconate 5-dehydroge 38.8 2.8E+02 0.006 24.5 10.4 83 154-241 10-99 (259)
482 cd01065 NAD_bind_Shikimate_DH 38.8 2.1E+02 0.0046 23.2 8.5 73 154-243 17-93 (155)
483 PRK06701 short chain dehydroge 38.5 2.6E+02 0.0055 25.7 9.4 83 154-241 44-134 (290)
484 COG4889 Predicted helicase [Ge 38.4 50 0.0011 36.6 4.9 46 155-201 845-900 (1518)
485 PLN02827 Alcohol dehydrogenase 38.3 1.5E+02 0.0033 28.5 8.1 38 155-195 193-234 (378)
486 PRK06114 short chain dehydroge 38.3 2.8E+02 0.0061 24.5 9.7 83 154-241 6-96 (254)
487 cd01493 APPBP1_RUB Ubiquitin a 37.8 2E+02 0.0043 28.9 8.9 80 154-239 18-120 (425)
488 COG5379 BtaA S-adenosylmethion 37.1 99 0.0021 30.1 6.2 60 156-221 64-123 (414)
489 KOG1596 Fibrillarin and relate 37.1 39 0.00085 31.8 3.5 97 130-241 135-236 (317)
490 PRK09072 short chain dehydroge 36.8 2E+02 0.0044 25.5 8.2 80 155-241 4-90 (263)
491 PRK07041 short chain dehydroge 36.3 2.3E+02 0.0049 24.4 8.3 72 164-241 4-79 (230)
492 PRK12743 oxidoreductase; Provi 36.2 2.9E+02 0.0062 24.4 9.1 80 157-241 3-90 (256)
493 PLN02989 cinnamyl-alcohol dehy 35.5 2E+02 0.0043 26.5 8.2 77 156-239 5-85 (325)
494 PF13460 NAD_binding_10: NADH( 35.2 2.2E+02 0.0047 23.7 7.7 63 162-240 3-69 (183)
495 cd08254 hydroxyacyl_CoA_DH 6-h 34.3 1.8E+02 0.0039 26.6 7.6 40 155-196 165-206 (338)
496 PRK08690 enoyl-(acyl carrier p 33.9 2.4E+02 0.0051 25.3 8.2 83 154-241 4-94 (261)
497 PRK05653 fabG 3-ketoacyl-(acyl 33.8 1.9E+02 0.0042 24.8 7.4 82 155-241 4-92 (246)
498 PRK05786 fabG 3-ketoacyl-(acyl 33.7 2.3E+02 0.0051 24.4 8.0 80 155-240 4-90 (238)
499 PRK08643 acetoin reductase; Va 33.3 3.3E+02 0.0072 23.8 9.8 80 157-241 3-89 (256)
500 PRK09496 trkA potassium transp 33.3 1.7E+02 0.0038 28.5 7.7 74 155-241 230-307 (453)
No 1
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=100.00 E-value=1.4e-43 Score=312.18 Aligned_cols=164 Identities=35% Similarity=0.612 Sum_probs=133.7
Q ss_pred EEEEeeeeCCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCH
Q 022298 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDP 188 (299)
Q Consensus 109 mrIi~Gk~~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~ 188 (299)
||||+|+|+||+|.+|++..+|||+++|||++||+|+.. + +++.+|||||||||++|+||+||||.+|++||.|+
T Consensus 1 mRIi~G~~kgr~l~~p~~~~~RPT~drvrealFniL~~~-~----~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~ 75 (183)
T PF03602_consen 1 MRIIGGKYKGRKLKTPKGDNTRPTTDRVREALFNILQPR-N----LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNR 75 (183)
T ss_dssp EE--SSTTTT-EEE-TT--TS-SSSHHHHHHHHHHHHCH------HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-H
T ss_pred CEEEeeecCCCEecCCCCCCcCCCcHHHHHHHHHHhccc-c----cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCH
Confidence 899999999999999999999999999999999999974 1 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCCe-E------------------EE
Q 022298 189 WVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDY-E------------------VV 249 (299)
Q Consensus 189 ~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~~-~------------------~v 249 (299)
+++ +.+++|++.++..++++++++|+..++.... ....+||+||+||||....+ . ++
T Consensus 76 ~a~-~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~---~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~ 151 (183)
T PF03602_consen 76 KAI-KIIKKNLEKLGLEDKIRVIKGDAFKFLLKLA---KKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIII 151 (183)
T ss_dssp HHH-HHHHHHHHHHT-GGGEEEEESSHHHHHHHHH---HCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEE
T ss_pred HHH-HHHHHHHHHhCCCcceeeeccCHHHHHHhhc---ccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEE
Confidence 998 9999999999998889999999998886542 23579999999999998753 2 39
Q ss_pred EecCCCCCCCCCCCeEEEEEeeecceEEEEee
Q 022298 250 EYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYG 281 (299)
Q Consensus 250 E~~~~~~~~~~~~~l~~~~~r~YG~t~l~~y~ 281 (299)
||+.+++++..+.+|+++++|+||+|.++||+
T Consensus 152 E~~~~~~~~~~~~~~~~~~~r~yG~t~~~~~~ 183 (183)
T PF03602_consen 152 EHSKKEDLPESPGNWELIKERKYGDTKLSFYQ 183 (183)
T ss_dssp EEETTSSS-SEETTEEEEEEEEETTEEEEEEE
T ss_pred EecCCCCCccCCCCEEEEEEecCCCEEEEEEC
Confidence 99998888877888999999999999999995
No 2
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1e-42 Score=305.97 Aligned_cols=165 Identities=30% Similarity=0.533 Sum_probs=148.7
Q ss_pred eEEEEeeeeCCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCC
Q 022298 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMD 187 (299)
Q Consensus 108 ~mrIi~Gk~~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n 187 (299)
+||||+|+||||+|.+|++.++|||+|+|||++||||... .+++.+|||||||||++|+||+||||.+|++||.|
T Consensus 1 ~mRIi~G~~kgr~L~~p~~~~~RPT~drVREalFNil~~~-----~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~ 75 (187)
T COG0742 1 QMRIIGGKYKGRKLKTPDGPGTRPTTDRVREALFNILAPD-----EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKD 75 (187)
T ss_pred CeEEEeccccCCcccCCCCCCcCCCchHHHHHHHHhcccc-----ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecC
Confidence 5899999999999999999999999999999999999872 16899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCCeE--------------------
Q 022298 188 PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYE-------------------- 247 (299)
Q Consensus 188 ~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~~~-------------------- 247 (299)
.+++ ..+++|++.+++..+.+++..|+..++..+. ..+.||+||+||||..+.+.
T Consensus 76 ~~a~-~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~----~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~i 150 (187)
T COG0742 76 RKAV-KILKENLKALGLEGEARVLRNDALRALKQLG----TREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALI 150 (187)
T ss_pred HHHH-HHHHHHHHHhCCccceEEEeecHHHHHHhcC----CCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEE
Confidence 9998 9999999999988889999999998876542 12359999999999965441
Q ss_pred EEEecCCCCCCCCCCCeEEEEEeeecceEEEEeec
Q 022298 248 VVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGP 282 (299)
Q Consensus 248 ~vE~~~~~~~~~~~~~l~~~~~r~YG~t~l~~y~~ 282 (299)
++||++..+++..+.+|++.++|+||.|.+.||..
T Consensus 151 v~E~~~~~~~~~~~~~~~~~r~k~yG~t~l~~y~~ 185 (187)
T COG0742 151 VVEHDKDVELPELPANFELHREKKYGQTKLTFYRR 185 (187)
T ss_pred EEEeCCCcCccccCCCeEEEEEeecCCEEEEEEEe
Confidence 39999988888788899999999999999999975
No 3
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=100.00 E-value=1.2e-36 Score=269.08 Aligned_cols=166 Identities=23% Similarity=0.277 Sum_probs=144.8
Q ss_pred cceEEEEeeeeCCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEe
Q 022298 106 HRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVE 185 (299)
Q Consensus 106 ~~~mrIi~Gk~~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD 185 (299)
++|||||+|+|+|++|..|++..+|||++++++++||+++.. +++.+|||||||||++|+||+|||+.+|++||
T Consensus 6 ~~~~rIi~G~~kg~~l~~p~~~~~rpt~~~vrea~f~~l~~~------~~g~~vLDLfaGsG~lglea~srga~~v~~vE 79 (189)
T TIGR00095 6 SKKRIIIGGWRGGRLLKLPPGGSTRPTTRVVRELFFNILRPE------IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEE 79 (189)
T ss_pred CceEEEEehhhCCcccCCCCCCCCCCchHHHHHHHHHHHHHh------cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEe
Confidence 469999999999999999999899999999999999999863 57899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCCe------------------E
Q 022298 186 MDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDY------------------E 247 (299)
Q Consensus 186 ~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~~------------------~ 247 (299)
+|+.++ +.+++|++.+++.++++++++|+.+++.... .....||+||+||||....+ .
T Consensus 80 ~~~~a~-~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~---~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~ii 155 (189)
T TIGR00095 80 DDRKAN-QTLKENLALLKSGEQAEVVRNSALRALKFLA---KKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLI 155 (189)
T ss_pred CCHHHH-HHHHHHHHHhCCcccEEEEehhHHHHHHHhh---ccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEE
Confidence 999998 9999999999987778999999988875431 11235899999999986432 2
Q ss_pred EEEecCCCCCCCCCCCeEEEEEeeecceEEEEee
Q 022298 248 VVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYG 281 (299)
Q Consensus 248 ~vE~~~~~~~~~~~~~l~~~~~r~YG~t~l~~y~ 281 (299)
++||+.+.+++.....|++.++|+||+|.++||+
T Consensus 156 v~E~~~~~~~~~~~~~~~~~~~r~yG~t~~~~~~ 189 (189)
T TIGR00095 156 VVEEDREPELPPVEAWLSLKRQKKGGVSYLLYYQ 189 (189)
T ss_pred EEEecCCCCCCCCcCCeEEEEEeecCcEEEEEEC
Confidence 3899887777655567999999999999999985
No 4
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=100.00 E-value=1.7e-33 Score=251.11 Aligned_cols=169 Identities=23% Similarity=0.366 Sum_probs=144.5
Q ss_pred ccccccc-ceEEEEeeeeCCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCC
Q 022298 100 QEERTTH-RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC 178 (299)
Q Consensus 100 ~~p~~~~-~~mrIi~Gk~~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa 178 (299)
+.|++.. ..||||+|+|+|++|.+|++..+||+++++++++|+++... ..+.+|||||||||++|++++++|+
T Consensus 3 ~~~~~~~~~~mrIi~g~~~g~~l~~~~~~~~Rp~~d~v~e~l~~~l~~~------~~~~~vLDl~~GsG~l~l~~lsr~a 76 (199)
T PRK10909 3 KKPNHSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV------IVDARCLDCFAGSGALGLEALSRYA 76 (199)
T ss_pred CCCCCCCCCCEEEEeeccCCCEeCCCCCCCcCcCCHHHHHHHHHHHhhh------cCCCEEEEcCCCccHHHHHHHHcCC
Confidence 3444442 24999999999999999998889999999999999999642 3578999999999999999999999
Q ss_pred CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCCe------------
Q 022298 179 SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDY------------ 246 (299)
Q Consensus 179 ~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~~------------ 246 (299)
.+|++||+|++++ +.+++|++.+++. +++++++|+.+++... ...||+||+||||..+.+
T Consensus 77 ~~V~~vE~~~~a~-~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~------~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~ 148 (199)
T PRK10909 77 AGATLLEMDRAVA-QQLIKNLATLKAG-NARVVNTNALSFLAQP------GTPHNVVFVDPPFRKGLLEETINLLEDNGW 148 (199)
T ss_pred CEEEEEECCHHHH-HHHHHHHHHhCCC-cEEEEEchHHHHHhhc------CCCceEEEECCCCCCChHHHHHHHHHHCCC
Confidence 9999999999998 9999999999975 5899999998876421 346999999999986532
Q ss_pred ------EEEEecCCCCCCCCCCCeEEEEEeeecceEEEEeec
Q 022298 247 ------EVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGP 282 (299)
Q Consensus 247 ------~~vE~~~~~~~~~~~~~l~~~~~r~YG~t~l~~y~~ 282 (299)
.++||+.+++++....+|+++++|+||+|.++||+.
T Consensus 149 l~~~~iv~ve~~~~~~~~~~~~~~~~~~~k~yG~s~~~~~~~ 190 (199)
T PRK10909 149 LADEALIYVESEVENGLPTVPANWQLHREKVAGQVAYRLYIR 190 (199)
T ss_pred cCCCcEEEEEecCCCCcccCCCccEEEEEecCCCEEEEEEEE
Confidence 239999988777666679999999999999999985
No 5
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.7e-15 Score=141.83 Aligned_cols=125 Identities=25% Similarity=0.342 Sum_probs=97.0
Q ss_pred cccccceEEEEeee--eCCeEEecCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCC
Q 022298 102 ERTTHRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC 178 (299)
Q Consensus 102 p~~~~~~mrIi~Gk--~~Gr~L~~p~~~-~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa 178 (299)
.+..+..+++|.|. |.|..+.+.++. .+||.|+.+.+++...+.. ...+|||+|||||++++.++.++.
T Consensus 62 rr~~~~P~~yi~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~~~--------~~~~ilDlGTGSG~iai~la~~~~ 133 (280)
T COG2890 62 RRAEGEPVAYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALALLLQ--------LDKRILDLGTGSGAIAIALAKEGP 133 (280)
T ss_pred HHHCCCCHhHhhccCeecceeeeeCCCceecCCchHHHHHHHHHhhhh--------cCCcEEEecCChHHHHHHHHhhCc
Confidence 33334456667774 779999987764 5899999988887633322 112799999999999998887754
Q ss_pred -CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCC
Q 022298 179 -SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD 245 (299)
Q Consensus 179 -~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~ 245 (299)
..|+++|+|++|+ +++++|++.+++ .++.++++|.++.+ .++||+|++||||-...
T Consensus 134 ~~~V~a~Dis~~Al-~~A~~Na~~~~l-~~~~~~~~dlf~~~---------~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 134 DAEVIAVDISPDAL-ALARENAERNGL-VRVLVVQSDLFEPL---------RGKFDLIVSNPPYIPAE 190 (280)
T ss_pred CCeEEEEECCHHHH-HHHHHHHHHcCC-ccEEEEeeeccccc---------CCceeEEEeCCCCCCCc
Confidence 3899999999998 999999999998 45666777776543 35899999999998754
No 6
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=4.1e-15 Score=131.03 Aligned_cols=79 Identities=30% Similarity=0.390 Sum_probs=72.0
Q ss_pred CCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298 153 SLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (299)
Q Consensus 153 ~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f 232 (299)
++++..|+|||||||.+|+.|+..|+.+|++||+|++++ +++++|+..++ +.+.++.+|+.++ ..+|
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~-ei~r~N~~~l~--g~v~f~~~dv~~~----------~~~~ 109 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEAL-EIARANAEELL--GDVEFVVADVSDF----------RGKF 109 (198)
T ss_pred CcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHH-HHHHHHHHhhC--CceEEEEcchhhc----------CCcc
Confidence 378899999999999999999999999999999999998 99999999844 4589999999886 3789
Q ss_pred eEEEEcCCCCCC
Q 022298 233 DYMSVTPPYTAV 244 (299)
Q Consensus 233 DlI~iDPPY~~~ 244 (299)
|.+++||||+..
T Consensus 110 dtvimNPPFG~~ 121 (198)
T COG2263 110 DTVIMNPPFGSQ 121 (198)
T ss_pred ceEEECCCCccc
Confidence 999999999975
No 7
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.62 E-value=2.5e-15 Score=138.51 Aligned_cols=128 Identities=22% Similarity=0.241 Sum_probs=96.6
Q ss_pred cccccccceEEEEeee--eCCeEEecCCCCC-CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc
Q 022298 100 QEERTTHRLLQVLGGK--ARRKKLLSPKGMD-VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR 176 (299)
Q Consensus 100 ~~p~~~~~~mrIi~Gk--~~Gr~L~~p~~~~-~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr 176 (299)
...+..++.+++|.|. |+|+++.++++.. +|+.++.+.+.+..++... ....+|||+|||||.+++.++.+
T Consensus 34 ~~rr~~~~Pl~yi~g~~~f~g~~~~v~~~vf~pr~~Te~Lv~~~l~~~~~~------~~~~~vLDlg~GsG~i~l~la~~ 107 (251)
T TIGR03704 34 VDRRVAGLPLEHVLGWAEFCGLRIAVDPGVFVPRRRTEFLVDEAAALARPR------SGTLVVVDLCCGSGAVGAALAAA 107 (251)
T ss_pred HHHHHcCCCHHHhcccCeEcCeEEEECCCCcCCCccHHHHHHHHHHhhccc------CCCCEEEEecCchHHHHHHHHHh
Confidence 3455556677778884 6699999877754 6888887777766665421 12458999999999999987764
Q ss_pred -CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298 177 -GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 177 -Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~ 243 (299)
+..+|+++|+|+.++ +.+++|++.++. +++++|+.+++... ..++||+|++||||..
T Consensus 108 ~~~~~v~~vDis~~al-~~A~~N~~~~~~----~~~~~D~~~~l~~~-----~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 108 LDGIELHAADIDPAAV-RCARRNLADAGG----TVHEGDLYDALPTA-----LRGRVDILAANAPYVP 165 (251)
T ss_pred CCCCEEEEEECCHHHH-HHHHHHHHHcCC----EEEEeechhhcchh-----cCCCEeEEEECCCCCC
Confidence 345799999999998 999999998763 57889987765321 1257999999999975
No 8
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.61 E-value=9.7e-15 Score=126.60 Aligned_cols=109 Identities=25% Similarity=0.411 Sum_probs=89.8
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCC-EEEEEeCCHHHHHHHHHHH
Q 022298 120 KLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCS-EVHFVEMDPWVVSNVLIPN 198 (299)
Q Consensus 120 ~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~-~V~~VD~n~~Al~~~a~~N 198 (299)
++..++|.+.++..+.-.+.+.+.+... ...++||+|||+|.+|+.++.++.. +|+++|+|+.|+ +.+++|
T Consensus 3 ~~~~~~gvFs~~~~d~~t~lL~~~l~~~-------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~-~~a~~n 74 (170)
T PF05175_consen 3 EFITHPGVFSPPRLDAGTRLLLDNLPKH-------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDAL-ELAKRN 74 (170)
T ss_dssp EEEEETTSTTTTSHHHHHHHHHHHHHHH-------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHH-HHHHHH
T ss_pred EEEECCCeeCCCCCCHHHHHHHHHHhhc-------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHH
Confidence 4567788777788888778888888753 4789999999999999999888765 799999999998 999999
Q ss_pred HHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCC
Q 022298 199 LEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD 245 (299)
Q Consensus 199 ~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~ 245 (299)
++.+++.+ ++++..|..+.. ..++||+|++|||+..+.
T Consensus 75 ~~~n~~~~-v~~~~~d~~~~~--------~~~~fD~Iv~NPP~~~~~ 112 (170)
T PF05175_consen 75 AERNGLEN-VEVVQSDLFEAL--------PDGKFDLIVSNPPFHAGG 112 (170)
T ss_dssp HHHTTCTT-EEEEESSTTTTC--------CTTCEEEEEE---SBTTS
T ss_pred HHhcCccc-cccccccccccc--------cccceeEEEEccchhccc
Confidence 99999987 999999987653 147899999999987654
No 9
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.61 E-value=1e-14 Score=141.53 Aligned_cols=114 Identities=12% Similarity=0.137 Sum_probs=91.2
Q ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Q 022298 117 RRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLI 196 (299)
Q Consensus 117 ~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~ 196 (299)
.|..+.++.+.+ -.+.+.+++++|+++....+ ...+.+|||||||+|.++++++++|+ +|++||+|+.|+ +.++
T Consensus 199 ~g~~~~~~~~~F-~Q~n~~~~~~l~~~~~~~l~---~~~~~~vLDL~cG~G~~~l~la~~~~-~v~~vE~~~~av-~~a~ 272 (374)
T TIGR02085 199 NDVPLVIRPQSF-FQTNPKVAAQLYATARQWVR---EIPVTQMWDLFCGVGGFGLHCAGPDT-QLTGIEIESEAI-ACAQ 272 (374)
T ss_pred CCEEEEECCCcc-ccCCHHHHHHHHHHHHHHHH---hcCCCEEEEccCCccHHHHHHhhcCC-eEEEEECCHHHH-HHHH
Confidence 355666666544 56667799999987754310 13467999999999999999998874 799999999998 9999
Q ss_pred HHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298 197 PNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 197 ~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~ 243 (299)
+|++.+++. +++++++|+.+++... ..+||+|++||||..
T Consensus 273 ~N~~~~~~~-~~~~~~~d~~~~~~~~------~~~~D~vi~DPPr~G 312 (374)
T TIGR02085 273 QSAQMLGLD-NLSFAALDSAKFATAQ------MSAPELVLVNPPRRG 312 (374)
T ss_pred HHHHHcCCC-cEEEEECCHHHHHHhc------CCCCCEEEECCCCCC
Confidence 999999985 5899999998876431 246999999999974
No 10
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.60 E-value=2.9e-15 Score=145.96 Aligned_cols=85 Identities=28% Similarity=0.394 Sum_probs=76.7
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~-~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
.|.+||||||.||++++.|+..||++|+.||+|..++ +++++|++.||+. +++.++++|++++++... ..+.+||
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al-~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~---~~g~~fD 292 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRAL-EWARENAELNGLDGDRHRFIVGDVFKWLRKAE---RRGEKFD 292 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHH-HHHHHHHHhcCCCccceeeehhhHHHHHHHHH---hcCCccc
Confidence 4899999999999999999999999999999999998 9999999999986 567899999999998764 3456999
Q ss_pred EEEEcCC-CCC
Q 022298 234 YMSVTPP-YTA 243 (299)
Q Consensus 234 lI~iDPP-Y~~ 243 (299)
+|++||| |..
T Consensus 293 lIilDPPsF~r 303 (393)
T COG1092 293 LIILDPPSFAR 303 (393)
T ss_pred EEEECCccccc
Confidence 9999999 443
No 11
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.60 E-value=5.1e-15 Score=138.39 Aligned_cols=128 Identities=20% Similarity=0.155 Sum_probs=101.0
Q ss_pred cccccceEEEEeee--eCCeEEecCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC-
Q 022298 102 ERTTHRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG- 177 (299)
Q Consensus 102 p~~~~~~mrIi~Gk--~~Gr~L~~p~~~-~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG- 177 (299)
.+.....+.+|.|+ |.|+.+.+..+. .+||.++.+.+.+++.+... ....+|||+|||||.+++.++...
T Consensus 64 ~r~~~~pl~yi~g~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~------~~~~~vLDlG~GsG~i~l~la~~~~ 137 (284)
T TIGR00536 64 RRVKGVPVAYLLGSKEFYGLEFFVNEHVLIPRPETEELVEKALASLISQ------NPILHILDLGTGSGCIALALAYEFP 137 (284)
T ss_pred HHHcCCCHHHHhCcceEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhc------CCCCEEEEEeccHhHHHHHHHHHCC
Confidence 33344556666774 669999887765 47999999999888776431 123699999999999999988764
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298 178 CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV 244 (299)
Q Consensus 178 a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~ 244 (299)
..+|+++|+|+.++ +.+++|++.+++.++++++++|+.+.+ ...+||+|++||||...
T Consensus 138 ~~~v~avDis~~al-~~a~~n~~~~~~~~~v~~~~~d~~~~~--------~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 138 NAEVIAVDISPDAL-AVAEENAEKNQLEHRVEFIQSNLFEPL--------AGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECchhccC--------cCCCccEEEECCCCCCc
Confidence 34799999999998 999999999998767899999987643 12379999999999864
No 12
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.60 E-value=4.8e-15 Score=118.98 Aligned_cols=82 Identities=30% Similarity=0.448 Sum_probs=70.1
Q ss_pred CCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEE
Q 022298 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235 (299)
Q Consensus 156 ~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI 235 (299)
|.+|||+|||+|.+.+.++.+|..+++++|+|+.++ ++++.|+..++..++++++++|+.+..... ..++||+|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~-~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-----~~~~~D~I 74 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAV-ELARRNLPRNGLDDRVEVIVGDARDLPEPL-----PDGKFDLI 74 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHH-HHHHHHCHHCTTTTTEEEEESHHHHHHHTC-----TTT-EEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHH-HHHHHHHHHccCCceEEEEECchhhchhhc-----cCceeEEE
Confidence 458999999999999999998867899999999998 999999999998888999999998876322 35789999
Q ss_pred EEcCCCCC
Q 022298 236 SVTPPYTA 243 (299)
Q Consensus 236 ~iDPPY~~ 243 (299)
++||||..
T Consensus 75 v~npP~~~ 82 (117)
T PF13659_consen 75 VTNPPYGP 82 (117)
T ss_dssp EE--STTS
T ss_pred EECCCCcc
Confidence 99999975
No 13
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.60 E-value=3.2e-15 Score=150.45 Aligned_cols=138 Identities=19% Similarity=0.221 Sum_probs=106.7
Q ss_pred cccccccccceEEEEeee--eCCeEEecCCCC-CCCCCHHHHHHHHHHHHHhcCC---------------CCC--CCCCC
Q 022298 98 KSQEERTTHRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGG---------------CPA--SLRPG 157 (299)
Q Consensus 98 ~~~~p~~~~~~mrIi~Gk--~~Gr~L~~p~~~-~~RPttd~Vrealfn~L~~~~~---------------~~~--~~~~~ 157 (299)
++...+..++.+++|.|+ |.|+.+.+-++. .+||.|+.+.+.+++.+..... ... ...+.
T Consensus 61 ~~~~rr~~~ePlqYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (506)
T PRK01544 61 KLLERRLKHEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFL 140 (506)
T ss_pred HHHHHHHcCCCHHHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCC
Confidence 445566667788888885 679999987765 5899999999988776541000 000 01346
Q ss_pred EEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEE
Q 022298 158 RWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMS 236 (299)
Q Consensus 158 ~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~ 236 (299)
+|||+|||||++++.++++ +..+|+++|+|+.++ +.+++|++.+++.++++++++|+.+.+ ..++||+|+
T Consensus 141 ~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al-~~A~~N~~~~~l~~~v~~~~~D~~~~~--------~~~~fDlIv 211 (506)
T PRK01544 141 NILELGTGSGCIAISLLCELPNANVIATDISLDAI-EVAKSNAIKYEVTDRIQIIHSNWFENI--------EKQKFDFIV 211 (506)
T ss_pred EEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHH-HHHHHHHHHcCCccceeeeecchhhhC--------cCCCccEEE
Confidence 8999999999999987764 445899999999998 999999999998777899999986543 135799999
Q ss_pred EcCCCCCC
Q 022298 237 VTPPYTAV 244 (299)
Q Consensus 237 iDPPY~~~ 244 (299)
+||||...
T Consensus 212 sNPPYi~~ 219 (506)
T PRK01544 212 SNPPYISH 219 (506)
T ss_pred ECCCCCCc
Confidence 99999863
No 14
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.59 E-value=8.8e-15 Score=143.37 Aligned_cols=128 Identities=18% Similarity=0.183 Sum_probs=102.0
Q ss_pred cccccccccceEEEEeee--eCCeEEecCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHH
Q 022298 98 KSQEERTTHRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAI 174 (299)
Q Consensus 98 ~~~~p~~~~~~mrIi~Gk--~~Gr~L~~p~~~-~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAl 174 (299)
+....+...+.+++|.|. |.|+.+.+.++. .+||.++.+.+.+++.+. .+.++||+|||||.+++.++
T Consensus 200 ~~v~RR~~gePlqYIlG~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~~l~---------~~~rVLDLGcGSG~IaiaLA 270 (423)
T PRK14966 200 RLAQRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPETEHLVEAVLARLP---------ENGRVWDLGTGSGAVAVTVA 270 (423)
T ss_pred HHHHHHHcCCCceeEeeeeeecCcEEEeCCCccCCCccHHHHHHHhhhccC---------CCCEEEEEeChhhHHHHHHH
Confidence 345566677889999995 679998886654 589999999998877653 24699999999999999877
Q ss_pred Hc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298 175 SR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 175 Sr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~ 243 (299)
.+ ...+|+++|+|+.++ +.+++|++.++. +++++++|+.+... ...++||+|++||||..
T Consensus 271 ~~~p~a~VtAVDiS~~AL-e~AreNa~~~g~--rV~fi~gDl~e~~l------~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 271 LERPDAFVRASDISPPAL-ETARKNAADLGA--RVEFAHGSWFDTDM------PSEGKWDIIVSNPPYIE 331 (423)
T ss_pred HhCCCCEEEEEECCHHHH-HHHHHHHHHcCC--cEEEEEcchhcccc------ccCCCccEEEECCCCCC
Confidence 54 456899999999998 999999998875 58899999865321 01357999999999964
No 15
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.57 E-value=1.2e-14 Score=142.14 Aligned_cols=86 Identities=22% Similarity=0.312 Sum_probs=75.1
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~-~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
.+.+|||+|||||+++++|+..|+.+|++||+|+.++ +.+++|++.|++. ++++++++|+.+++.... ..+++||
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al-~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~---~~~~~fD 295 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEAL-DIARQNVELNKLDLSKAEFVRDDVFKLLRTYR---DRGEKFD 295 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCCcEEEEEccHHHHHHHHH---hcCCCCC
Confidence 4789999999999999999998998999999999998 9999999999986 468999999999886531 1245899
Q ss_pred EEEEcCCCCCC
Q 022298 234 YMSVTPPYTAV 244 (299)
Q Consensus 234 lI~iDPPY~~~ 244 (299)
+||+||||...
T Consensus 296 lVilDPP~f~~ 306 (396)
T PRK15128 296 VIVMDPPKFVE 306 (396)
T ss_pred EEEECCCCCCC
Confidence 99999999653
No 16
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.57 E-value=1.5e-14 Score=135.83 Aligned_cols=82 Identities=29% Similarity=0.394 Sum_probs=67.7
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~-~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
.+++|||+||.||++++.|+..||.+|+.||.+..++ +++++|++.||++ +++++++.|+++++.... ..++||
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al-~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~----~~~~fD 197 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRAL-EWAKENAALNGLDLDRHRFIQGDVFKFLKRLK----KGGRFD 197 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHH-HHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH----HTT-EE
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCccceEEEecCHHHHHHHHh----cCCCCC
Confidence 5789999999999999999999999999999999998 9999999999986 578999999999987642 246899
Q ss_pred EEEEcCCC
Q 022298 234 YMSVTPPY 241 (299)
Q Consensus 234 lI~iDPPY 241 (299)
+|++|||-
T Consensus 198 ~IIlDPPs 205 (286)
T PF10672_consen 198 LIILDPPS 205 (286)
T ss_dssp EEEE--SS
T ss_pred EEEECCCC
Confidence 99999993
No 17
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.57 E-value=3.4e-14 Score=137.42 Aligned_cols=117 Identities=21% Similarity=0.212 Sum_probs=87.8
Q ss_pred eEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHH
Q 022298 119 KKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPN 198 (299)
Q Consensus 119 r~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N 198 (299)
..+..+.+.+..+... +.+.+++++..... ..+.+|||+|||+|++++ ++++++.+|++||+++.++ +.+++|
T Consensus 175 ~~~~~~~~sF~Q~N~~-~~e~l~~~v~~~~~----~~~~~vLDl~~G~G~~sl-~la~~~~~v~~vE~~~~ai-~~a~~N 247 (362)
T PRK05031 175 FIYRQVENSFTQPNAA-VNEKMLEWALDATK----GSKGDLLELYCGNGNFTL-ALARNFRRVLATEISKPSV-AAAQYN 247 (362)
T ss_pred EEEEeCCCCeeccCHH-HHHHHHHHHHHHhh----cCCCeEEEEeccccHHHH-HHHhhCCEEEEEECCHHHH-HHHHHH
Confidence 3455555555555544 77888888765311 123579999999999999 7788888999999999998 999999
Q ss_pred HHHhCCCCcEEEEEcchhhHHHHHhhhc-----C----CCCCeeEEEEcCCCCC
Q 022298 199 LEWTGFLDVSSIHTVRVETFLERAEQFV-----G----KDGPFDYMSVTPPYTA 243 (299)
Q Consensus 199 ~~~~g~~~~~~vi~~D~~~~l~~~~~~~-----~----~~~~fDlI~iDPPY~~ 243 (299)
++.+++. +++++++|+.++++...... + ...+||+||+||||..
T Consensus 248 ~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G 300 (362)
T PRK05031 248 IAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAG 300 (362)
T ss_pred HHHhCCC-cEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCC
Confidence 9999986 58999999999876431100 0 0125899999999964
No 18
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.55 E-value=3.5e-14 Score=133.11 Aligned_cols=129 Identities=21% Similarity=0.255 Sum_probs=98.0
Q ss_pred ccccc-ccceEEEEeee--eCCeEEecCCCC-CCCCCHHHHHHHHHH-HHHhcCCCCCCCCCCEEEEECCccchHHHHHH
Q 022298 100 QEERT-THRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFD-ILQSAGGCPASLRPGRWLDLYSGTGSVGIEAI 174 (299)
Q Consensus 100 ~~p~~-~~~~mrIi~Gk--~~Gr~L~~p~~~-~~RPttd~Vrealfn-~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAl 174 (299)
...+. .+..+.+|.|+ |.|..+.+..+. .+||.++.+.+..+. ++.. ..+.+|||+|||||.+++.++
T Consensus 68 ~~rr~~~~~Pl~yi~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~-------~~~~~vLDlG~GsG~i~~~la 140 (284)
T TIGR03533 68 IERRIEERIPVAYLTNEAWFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEP-------EPVKRILDLCTGSGCIAIACA 140 (284)
T ss_pred HHHHHhCCCcHHHHcCCCeecCcEEEECCCCccCCCchHHHHHHHHHHHhcc-------CCCCEEEEEeCchhHHHHHHH
Confidence 34443 34577778885 458888887664 478887765555443 3321 135689999999999999988
Q ss_pred HcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298 175 SRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV 244 (299)
Q Consensus 175 SrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~ 244 (299)
.+. ..+|+++|+|+.++ +.+++|++.+++.++++++++|+.+.+ ..++||+|++||||...
T Consensus 141 ~~~~~~~v~avDis~~al-~~A~~n~~~~~~~~~i~~~~~D~~~~~--------~~~~fD~Iv~NPPy~~~ 202 (284)
T TIGR03533 141 YAFPEAEVDAVDISPDAL-AVAEINIERHGLEDRVTLIQSDLFAAL--------PGRKYDLIVSNPPYVDA 202 (284)
T ss_pred HHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECchhhcc--------CCCCccEEEECCCCCCc
Confidence 763 34799999999998 999999999998777999999986543 13579999999999763
No 19
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.55 E-value=2.7e-14 Score=131.20 Aligned_cols=107 Identities=21% Similarity=0.289 Sum_probs=87.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCC
Q 022298 126 GMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGF 204 (299)
Q Consensus 126 ~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~ 204 (299)
....|+.+|.+.-+-|-.. ...++|||+|||+|.+|+.+++| ...++++||++++++ +.+++|++.+++
T Consensus 24 ~~~~~~~~DaiLL~~~~~~---------~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a-~~A~~nv~ln~l 93 (248)
T COG4123 24 RCGFRYGTDAILLAAFAPV---------PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAA-EMAQRNVALNPL 93 (248)
T ss_pred CCccccccHHHHHHhhccc---------ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHH-HHHHHHHHhCcc
Confidence 3457999997654443322 23789999999999999998888 546899999999998 999999999999
Q ss_pred CCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCCeE
Q 022298 205 LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYE 247 (299)
Q Consensus 205 ~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~~~ 247 (299)
+++++++++|+..+.+.. ...+||+|++||||......
T Consensus 94 ~~ri~v~~~Di~~~~~~~-----~~~~fD~Ii~NPPyf~~~~~ 131 (248)
T COG4123 94 EERIQVIEADIKEFLKAL-----VFASFDLIICNPPYFKQGSR 131 (248)
T ss_pred hhceeEehhhHHHhhhcc-----cccccCEEEeCCCCCCCccc
Confidence 999999999999987653 23479999999999875443
No 20
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.53 E-value=6.5e-14 Score=132.77 Aligned_cols=128 Identities=21% Similarity=0.247 Sum_probs=97.8
Q ss_pred ccccc-ccceEEEEeee--eCCeEEecCCCC-CCCCCHHHHHHHHHH-HHHhcCCCCCCCCCCEEEEECCccchHHHHHH
Q 022298 100 QEERT-THRLLQVLGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFD-ILQSAGGCPASLRPGRWLDLYSGTGSVGIEAI 174 (299)
Q Consensus 100 ~~p~~-~~~~mrIi~Gk--~~Gr~L~~p~~~-~~RPttd~Vrealfn-~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAl 174 (299)
...+. ....+++|.|+ |.|+.+.+.++. .+||.++.+.+..+. ++.. ....+|||+|||+|.+++.++
T Consensus 80 ~~rr~~~~~Pl~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~-------~~~~~VLDlG~GsG~iai~la 152 (307)
T PRK11805 80 IERRINERIPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWLED-------PPVTRILDLCTGSGCIAIACA 152 (307)
T ss_pred HHHHHHCCccHHHHcCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHHhcc-------CCCCEEEEEechhhHHHHHHH
Confidence 34443 35677788885 458888886654 478887766555544 3321 113689999999999999887
Q ss_pred HcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298 175 SRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 175 SrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~ 243 (299)
.+. ..+|+++|+|+.++ +.+++|++.+++.++++++++|+.+.+. .++||+|++||||..
T Consensus 153 ~~~p~~~V~avDis~~al-~~A~~n~~~~~l~~~i~~~~~D~~~~l~--------~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 153 YAFPDAEVDAVDISPDAL-AVAEINIERHGLEDRVTLIESDLFAALP--------GRRYDLIVSNPPYVD 213 (307)
T ss_pred HHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCCcEEEEECchhhhCC--------CCCccEEEECCCCCC
Confidence 753 45799999999998 9999999999987779999999876431 357999999999975
No 21
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.50 E-value=8.2e-14 Score=145.20 Aligned_cols=82 Identities=20% Similarity=0.325 Sum_probs=74.5
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~-~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
.+.+|||+|||||++++.|+.+|+.+|++||+|+.++ +.+++|++.+++. ++++++++|+.+++... .++||
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al-~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~------~~~fD 610 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYL-EWAERNFALNGLSGRQHRLIQADCLAWLKEA------REQFD 610 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCccceEEEEccHHHHHHHc------CCCcC
Confidence 4789999999999999999999998999999999998 9999999999986 57999999999987542 36899
Q ss_pred EEEEcCCCCC
Q 022298 234 YMSVTPPYTA 243 (299)
Q Consensus 234 lI~iDPPY~~ 243 (299)
+|++||||..
T Consensus 611 lIilDPP~f~ 620 (702)
T PRK11783 611 LIFIDPPTFS 620 (702)
T ss_pred EEEECCCCCC
Confidence 9999999965
No 22
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.49 E-value=1.3e-13 Score=127.37 Aligned_cols=133 Identities=18% Similarity=0.211 Sum_probs=101.0
Q ss_pred ccceEEEEeeee--CCeEEecCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHH-cCCCE
Q 022298 105 THRLLQVLGGKA--RRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSE 180 (299)
Q Consensus 105 ~~~~mrIi~Gk~--~Gr~L~~p~~~-~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlS-rGa~~ 180 (299)
.+-.+++|-|.| .+..|..-++. .+||.|+.+.+++.+.+.+.. -..+..+||+|||||++++..++ .+...
T Consensus 99 ~r~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~----~~~~~~ildlgtGSGaIslsll~~L~~~~ 174 (328)
T KOG2904|consen 99 KRMPLQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSE----HSKHTHILDLGTGSGAISLSLLHGLPQCT 174 (328)
T ss_pred hcCChhheeccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhh----hcccceEEEecCCccHHHHHHHhcCCCce
Confidence 344678888875 47777766654 589999999999888876531 13466899999999999998775 35567
Q ss_pred EEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298 181 VHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV 244 (299)
Q Consensus 181 V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~ 244 (299)
|++||.++.|+ .++.+|++.+++.+++.+++-++..-.... +....+++|+++.||||...
T Consensus 175 v~AiD~S~~Ai-~La~eN~qr~~l~g~i~v~~~~me~d~~~~--~~l~~~~~dllvsNPPYI~~ 235 (328)
T KOG2904|consen 175 VTAIDVSKAAI-KLAKENAQRLKLSGRIEVIHNIMESDASDE--HPLLEGKIDLLVSNPPYIRK 235 (328)
T ss_pred EEEEeccHHHH-HHHHHHHHHHhhcCceEEEecccccccccc--cccccCceeEEecCCCcccc
Confidence 99999999998 999999999999999988865443211000 11234789999999999863
No 23
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=2.4e-13 Score=127.67 Aligned_cols=197 Identities=14% Similarity=0.172 Sum_probs=133.1
Q ss_pred eeeeeeccccccccceeEeeccCCCCCChhHHHHHHHHcCCCCCCC-ccCCCcchhhhhc--ccCCc------e-----e
Q 022298 28 FSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDEF-LSEPSPKTRRRKE--GRGSK------L-----V 93 (299)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~~--~~~g~------~-----~ 93 (299)
+.++...+.. ..-++.-+.+...+..+..+++++..-.-+-.++ +|+...+-++... ...+. + .
T Consensus 27 ~~~~~~~~~~--~~d~~l~~~pK~~~e~e~qLa~ll~~~~~g~~i~v~g~~~~g~~s~~k~l~~~~~~~~~~~a~~~~~~ 104 (300)
T COG2813 27 FLVAPADAPD--DFDAVLLYWPKHKAEAEFQLAQLLARLPPGGEIVVVGEKRDGVRSAEKMLEKYGGPTKTDSARHCMRL 104 (300)
T ss_pred cccccccccC--CCCEEEEEccCchHHHHHHHHHHHhhCCCCCeEEEEecccchHHHHHHHHHHhcCccccchHhhccee
Confidence 3344444444 5678888999999989999999999887777666 3555544332111 00000 0 0
Q ss_pred eecccccccccccceEEEEeeee--CCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHH
Q 022298 94 VSDEKSQEERTTHRLLQVLGGKA--RRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGI 171 (299)
Q Consensus 94 ~~~~~~~~p~~~~~~mrIi~Gk~--~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgI 171 (299)
..-.+...+.... ..+.... .+..+.+.+|.+-+-..|.-.+.+.+.+... .+.+|||+|||.|.+|+
T Consensus 105 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~-------~~~~vlDlGCG~Gvlg~ 174 (300)
T COG2813 105 HYYSENPPPFADE---PEWKVYLLGHELTFKTLPGVFSRDKLDKGSRLLLETLPPD-------LGGKVLDLGCGYGVLGL 174 (300)
T ss_pred EeecCCCCcccch---hhhhhhhccCceEEEeCCCCCcCCCcChHHHHHHHhCCcc-------CCCcEEEeCCCccHHHH
Confidence 0000111111110 0111111 2455667788877888898888888887652 34599999999999999
Q ss_pred HHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCCeE
Q 022298 172 EAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYE 247 (299)
Q Consensus 172 EAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~~~ 247 (299)
.++++. ..+++++|.|..|+ +.+++|++.|+.++. .++..|+.+-. .++||+|++||||..+...
T Consensus 175 ~la~~~p~~~vtmvDvn~~Av-~~ar~Nl~~N~~~~~-~v~~s~~~~~v---------~~kfd~IisNPPfh~G~~v 240 (300)
T COG2813 175 VLAKKSPQAKLTLVDVNARAV-ESARKNLAANGVENT-EVWASNLYEPV---------EGKFDLIISNPPFHAGKAV 240 (300)
T ss_pred HHHHhCCCCeEEEEecCHHHH-HHHHHhHHHcCCCcc-EEEEecccccc---------cccccEEEeCCCccCCcch
Confidence 988874 56899999999999 999999999999764 67888877643 3589999999999986543
No 24
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.49 E-value=5.1e-13 Score=126.75 Aligned_cols=113 Identities=15% Similarity=0.184 Sum_probs=85.4
Q ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 022298 118 RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP 197 (299)
Q Consensus 118 Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~ 197 (299)
|..+....+.+ -.+...+.+.+++.+..... ...+.+|||+|||+|.++++++++|+ +|+++|+|+.++ +.+++
T Consensus 140 ~~~~~~~~~sF-~Q~n~~~~~~l~~~v~~~l~---~~~~~~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av-~~A~~ 213 (315)
T PRK03522 140 GVPLFIRPQSF-FQTNPAVAAQLYATARDWVR---ELPPRSMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAI-ACAKQ 213 (315)
T ss_pred CEEEEECCCee-eecCHHHHHHHHHHHHHHHH---hcCCCEEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHH-HHHHH
Confidence 44555555444 33444566667665433210 13468999999999999999998874 799999999998 99999
Q ss_pred HHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298 198 NLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 198 N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~ 243 (299)
|++.+++. +++++++|+.++.... .+.||+|++|||+..
T Consensus 214 n~~~~~l~-~v~~~~~D~~~~~~~~------~~~~D~Vv~dPPr~G 252 (315)
T PRK03522 214 SAAELGLT-NVQFQALDSTQFATAQ------GEVPDLVLVNPPRRG 252 (315)
T ss_pred HHHHcCCC-ceEEEEcCHHHHHHhc------CCCCeEEEECCCCCC
Confidence 99999984 5899999998876321 347999999999875
No 25
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.46 E-value=2.1e-13 Score=119.71 Aligned_cols=99 Identities=23% Similarity=0.305 Sum_probs=72.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCC----------EEEEEeCCHHHHHHHHHHHH
Q 022298 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCS----------EVHFVEMDPWVVSNVLIPNL 199 (299)
Q Consensus 130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~----------~V~~VD~n~~Al~~~a~~N~ 199 (299)
-|..+.+..++.+.... .++..|||+|||||++.|||+..+.. +++++|+|++++ +.+++|+
T Consensus 10 a~L~~~lA~~ll~la~~-------~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v-~~a~~N~ 81 (179)
T PF01170_consen 10 APLRPTLAAALLNLAGW-------RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAV-RGARENL 81 (179)
T ss_dssp TSS-HHHHHHHHHHTT---------TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHH-HHHHHHH
T ss_pred CCCCHHHHHHHHHHhCC-------CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHH-HHHHHHH
Confidence 34455677778776553 25789999999999999999876533 268999999998 9999999
Q ss_pred HHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298 200 EWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 200 ~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~ 243 (299)
+..++.+.+.+.+.|+.++- ...+.+|.|++||||+.
T Consensus 82 ~~ag~~~~i~~~~~D~~~l~-------~~~~~~d~IvtnPPyG~ 118 (179)
T PF01170_consen 82 KAAGVEDYIDFIQWDARELP-------LPDGSVDAIVTNPPYGR 118 (179)
T ss_dssp HHTT-CGGEEEEE--GGGGG-------GTTSBSCEEEEE--STT
T ss_pred HhcccCCceEEEecchhhcc-------cccCCCCEEEECcchhh
Confidence 99999888899999988764 12468999999999996
No 26
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.46 E-value=1e-12 Score=126.84 Aligned_cols=114 Identities=21% Similarity=0.241 Sum_probs=82.1
Q ss_pred eEEecCCCCCCCCCH---HHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHH
Q 022298 119 KKLLSPKGMDVRPMM---EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL 195 (299)
Q Consensus 119 r~L~~p~~~~~RPtt---d~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a 195 (299)
.++..+.+.+..+.. +.+.+.+.+++.. .+.+|||+|||+|.+++ ++++++.+|++||+++.++ +.+
T Consensus 166 ~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~--------~~~~vlDl~~G~G~~sl-~la~~~~~v~~vE~~~~av-~~a 235 (353)
T TIGR02143 166 FIYRQVENSFTQPNAAVNIKMLEWACEVTQG--------SKGDLLELYCGNGNFSL-ALAQNFRRVLATEIAKPSV-NAA 235 (353)
T ss_pred EEEEECCCCcccCCHHHHHHHHHHHHHHhhc--------CCCcEEEEeccccHHHH-HHHHhCCEEEEEECCHHHH-HHH
Confidence 456656655554444 3344444444431 23479999999999999 7788788999999999998 999
Q ss_pred HHHHHHhCCCCcEEEEEcchhhHHHHHhh---h---cC---CCCCeeEEEEcCCCCC
Q 022298 196 IPNLEWTGFLDVSSIHTVRVETFLERAEQ---F---VG---KDGPFDYMSVTPPYTA 243 (299)
Q Consensus 196 ~~N~~~~g~~~~~~vi~~D~~~~l~~~~~---~---~~---~~~~fDlI~iDPPY~~ 243 (299)
++|++.+++.+ ++++++|+.+++..... + .. ....||+||+|||+..
T Consensus 236 ~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G 291 (353)
T TIGR02143 236 QYNIAANNIDN-VQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAG 291 (353)
T ss_pred HHHHHHcCCCc-EEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCC
Confidence 99999999865 89999999998753210 0 00 0124899999999754
No 27
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.45 E-value=2e-13 Score=128.88 Aligned_cols=118 Identities=21% Similarity=0.288 Sum_probs=84.7
Q ss_pred eeeecc-cccccc-cccceEEEEeeeeCCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchH
Q 022298 92 LVVSDE-KSQEER-TTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169 (299)
Q Consensus 92 ~~~~~~-~~~~p~-~~~~~mrIi~Gk~~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGal 169 (299)
+...+. +.+ |. .....++|..|. ..|.+.+|||..+.+.+-... ..+.+|||+|||||.+
T Consensus 114 ~~I~P~w~~~-~~~~~~~~I~idPg~--------AFGTG~H~TT~lcl~~l~~~~---------~~g~~vLDvG~GSGIL 175 (295)
T PF06325_consen 114 LVIVPSWEEY-PEPPDEIVIEIDPGM--------AFGTGHHPTTRLCLELLEKYV---------KPGKRVLDVGCGSGIL 175 (295)
T ss_dssp EEEEETT-----SSTTSEEEEESTTS--------SS-SSHCHHHHHHHHHHHHHS---------STTSEEEEES-TTSHH
T ss_pred EEEECCCccc-CCCCCcEEEEECCCC--------cccCCCCHHHHHHHHHHHHhc---------cCCCEEEEeCCcHHHH
Confidence 455555 333 33 333356665563 567788999999888875543 3578999999999999
Q ss_pred HHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcC
Q 022298 170 GIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP 239 (299)
Q Consensus 170 gIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDP 239 (299)
+|.|+..||.+|+++|+|+.|+ +.+++|++.|++.+++.+. ...+. ..++||+|++|=
T Consensus 176 aiaA~klGA~~v~a~DiDp~Av-~~a~~N~~~N~~~~~~~v~--~~~~~---------~~~~~dlvvANI 233 (295)
T PF06325_consen 176 AIAAAKLGAKKVVAIDIDPLAV-EAARENAELNGVEDRIEVS--LSEDL---------VEGKFDLVVANI 233 (295)
T ss_dssp HHHHHHTTBSEEEEEESSCHHH-HHHHHHHHHTT-TTCEEES--CTSCT---------CCS-EEEEEEES
T ss_pred HHHHHHcCCCeEEEecCCHHHH-HHHHHHHHHcCCCeeEEEE--Eeccc---------ccccCCEEEECC
Confidence 9999999999999999999998 9999999999998876553 11111 137899999886
No 28
>PRK10742 putative methyltransferase; Provisional
Probab=99.44 E-value=6.2e-13 Score=122.19 Aligned_cols=80 Identities=20% Similarity=0.213 Sum_probs=70.0
Q ss_pred EEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHh------CC--CCcEEEEEcchhhHHHHHhhhcCCC
Q 022298 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT------GF--LDVSSIHTVRVETFLERAEQFVGKD 229 (299)
Q Consensus 158 ~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~------g~--~~~~~vi~~D~~~~l~~~~~~~~~~ 229 (299)
+|||++||+|..|++++|+|+. |++||.|+.++ .+++.|++.. +. ..+++++++|+.+++... .
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~va-alL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~------~ 162 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCR-VRMLERNPVVA-ALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI------T 162 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCE-EEEEECCHHHH-HHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC------C
Confidence 8999999999999999999997 99999999997 9999999985 32 246899999999998653 3
Q ss_pred CCeeEEEEcCCCCCCC
Q 022298 230 GPFDYMSVTPPYTAVD 245 (299)
Q Consensus 230 ~~fDlI~iDPPY~~~~ 245 (299)
..||+||+||||....
T Consensus 163 ~~fDVVYlDPMfp~~~ 178 (250)
T PRK10742 163 PRPQVVYLDPMFPHKQ 178 (250)
T ss_pred CCCcEEEECCCCCCCc
Confidence 4799999999998743
No 29
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=7.7e-13 Score=124.62 Aligned_cols=126 Identities=20% Similarity=0.240 Sum_probs=91.0
Q ss_pred cCCc-eeeeccccccccc-ccceEEEEeeeeCCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCc
Q 022298 88 RGSK-LVVSDEKSQEERT-THRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSG 165 (299)
Q Consensus 88 ~~g~-~~~~~~~~~~p~~-~~~~mrIi~Gk~~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaG 165 (299)
++|. +...+...-.|.. -.-.+++-.|- ..|.+++|||....+++=+.++ ++.+|||+|||
T Consensus 110 rig~~f~I~Psw~~~~~~~~~~~i~lDPGl--------AFGTG~HpTT~lcL~~Le~~~~---------~g~~vlDvGcG 172 (300)
T COG2264 110 RIGERFVIVPSWREYPEPSDELNIELDPGL--------AFGTGTHPTTSLCLEALEKLLK---------KGKTVLDVGCG 172 (300)
T ss_pred EeeeeEEECCCCccCCCCCCceEEEEcccc--------ccCCCCChhHHHHHHHHHHhhc---------CCCEEEEecCC
Confidence 3444 4455552222222 22256777774 5678899999998887754443 58899999999
Q ss_pred cchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcC
Q 022298 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP 239 (299)
Q Consensus 166 SGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDP 239 (299)
||.++|.|+..||.+|+++|+|+.|+ +.+++|++.|++....+.-..+..... .+++||+|++|=
T Consensus 173 SGILaIAa~kLGA~~v~g~DiDp~AV-~aa~eNa~~N~v~~~~~~~~~~~~~~~--------~~~~~DvIVANI 237 (300)
T COG2264 173 SGILAIAAAKLGAKKVVGVDIDPQAV-EAARENARLNGVELLVQAKGFLLLEVP--------ENGPFDVIVANI 237 (300)
T ss_pred hhHHHHHHHHcCCceEEEecCCHHHH-HHHHHHHHHcCCchhhhcccccchhhc--------ccCcccEEEehh
Confidence 99999999999999999999999999 999999999998742222223322221 236899999886
No 30
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.43 E-value=1.2e-12 Score=129.76 Aligned_cols=115 Identities=19% Similarity=0.172 Sum_probs=86.6
Q ss_pred eCCeEEecCCCCCC---CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHH
Q 022298 116 ARRKKLLSPKGMDV---RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVS 192 (299)
Q Consensus 116 ~~Gr~L~~p~~~~~---RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~ 192 (299)
+.|..+....+.+. +..++.+.+.+.+++.. ..+.+|||+|||+|.+++.++.++ .+|+++|+|+.++
T Consensus 262 ~~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~-------~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al- 332 (443)
T PRK13168 262 EFGLRLAFSPRDFIQVNAQVNQKMVARALEWLDP-------QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMV- 332 (443)
T ss_pred cCCeEEEECCCCeEEcCHHHHHHHHHHHHHHhcC-------CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHH-
Confidence 34666666555443 33345566666666542 256899999999999999887776 5799999999998
Q ss_pred HHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298 193 NVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 193 ~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~ 243 (299)
+.+++|++.+++.+ ++++++|+.+++.... .....||+|++||||..
T Consensus 333 ~~A~~n~~~~~~~~-v~~~~~d~~~~l~~~~---~~~~~fD~Vi~dPPr~g 379 (443)
T PRK13168 333 ERARENARRNGLDN-VTFYHANLEEDFTDQP---WALGGFDKVLLDPPRAG 379 (443)
T ss_pred HHHHHHHHHcCCCc-eEEEEeChHHhhhhhh---hhcCCCCEEEECcCCcC
Confidence 99999999999864 8999999987653210 11357999999999985
No 31
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.43 E-value=1.1e-12 Score=127.48 Aligned_cols=78 Identities=18% Similarity=0.297 Sum_probs=69.6
Q ss_pred CEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298 157 GRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (299)
Q Consensus 157 ~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl 234 (299)
.+|||+|||||.+||+++++ |+.+|+++|+|+.|+ +.+++|++.|+..+ ++++++|+..++... ..+||+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av-~~i~~N~~~N~~~~-~~v~~~Da~~~l~~~------~~~fDv 117 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAV-ESIKNNVEYNSVEN-IEVPNEDAANVLRYR------NRKFHV 117 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCc-EEEEchhHHHHHHHh------CCCCCE
Confidence 58999999999999999998 789999999999998 99999999998864 789999999988643 367999
Q ss_pred EEEcCCCCC
Q 022298 235 MSVTPPYTA 243 (299)
Q Consensus 235 I~iDPPY~~ 243 (299)
|++|| |+.
T Consensus 118 IdlDP-fGs 125 (374)
T TIGR00308 118 IDIDP-FGT 125 (374)
T ss_pred EEeCC-CCC
Confidence 99999 554
No 32
>PRK14967 putative methyltransferase; Provisional
Probab=99.42 E-value=2.4e-12 Score=116.05 Aligned_cols=110 Identities=25% Similarity=0.344 Sum_probs=83.6
Q ss_pred eCCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHH
Q 022298 116 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL 195 (299)
Q Consensus 116 ~~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a 195 (299)
+.|..+.++++. .+|..+. +.+.+.+.... ...+.+|||+|||+|.+++.++..|+.+|+++|+|+.++ +.+
T Consensus 4 ~~~~~~~~~~g~-~~p~~ds--~~l~~~l~~~~----~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l-~~a 75 (223)
T PRK14967 4 TPPDALLRAPGV-YRPQEDT--QLLADALAAEG----LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAV-RSA 75 (223)
T ss_pred CCCceeecCCCC-cCCCCcH--HHHHHHHHhcc----cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHH-HHH
Confidence 346667777764 3676653 23444443321 124689999999999999998887877899999999998 999
Q ss_pred HHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298 196 IPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 196 ~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~ 243 (299)
++|++.++. +++++++|+.+.+ ..+.||+|++||||..
T Consensus 76 ~~n~~~~~~--~~~~~~~d~~~~~--------~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 76 RLNALLAGV--DVDVRRGDWARAV--------EFRPFDVVVSNPPYVP 113 (223)
T ss_pred HHHHHHhCC--eeEEEECchhhhc--------cCCCeeEEEECCCCCC
Confidence 999998886 3778889987643 1368999999999975
No 33
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=3.5e-12 Score=126.07 Aligned_cols=117 Identities=21% Similarity=0.173 Sum_probs=87.6
Q ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 022298 118 RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP 197 (299)
Q Consensus 118 Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~ 197 (299)
|..+.++...++.+... +.+.++.+.....+ ...+.++||||||.|+||+.++ ..+.+|++||+++.++ +.+++
T Consensus 260 ~~~~~~~~~sF~Q~N~~-~~ekl~~~a~~~~~---~~~~~~vlDlYCGvG~f~l~lA-~~~~~V~gvEi~~~aV-~~A~~ 333 (432)
T COG2265 260 GVSFQISPRSFFQVNPA-VAEKLYETALEWLE---LAGGERVLDLYCGVGTFGLPLA-KRVKKVHGVEISPEAV-EAAQE 333 (432)
T ss_pred ceEEEeCCCCceecCHH-HHHHHHHHHHHHHh---hcCCCEEEEeccCCChhhhhhc-ccCCEEEEEecCHHHH-HHHHH
Confidence 35555555555555554 44445444433210 0246799999999999999654 5566899999999999 99999
Q ss_pred HHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCC
Q 022298 198 NLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD 245 (299)
Q Consensus 198 N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~ 245 (299)
|++.|++.| +++..+|++++..... ....||.|++|||...-+
T Consensus 334 NA~~n~i~N-~~f~~~~ae~~~~~~~----~~~~~d~VvvDPPR~G~~ 376 (432)
T COG2265 334 NAAANGIDN-VEFIAGDAEEFTPAWW----EGYKPDVVVVDPPRAGAD 376 (432)
T ss_pred HHHHcCCCc-EEEEeCCHHHHhhhcc----ccCCCCEEEECCCCCCCC
Confidence 999999987 9999999999986531 235899999999998754
No 34
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.37 E-value=5.5e-12 Score=116.01 Aligned_cols=111 Identities=24% Similarity=0.280 Sum_probs=87.6
Q ss_pred eCCeEEecCCC-CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHH
Q 022298 116 ARRKKLLSPKG-MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSN 193 (299)
Q Consensus 116 ~~Gr~L~~p~~-~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~ 193 (299)
|.|+.+.+..+ ..+||.++.+.+.+++.+.. ..+.+|||+|||+|.+++.++... ..+++++|+++.++ +
T Consensus 75 f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~-------~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l-~ 146 (275)
T PRK09328 75 FWGLDFKVSPGVLIPRPETEELVEWALEALLL-------KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEAL-A 146 (275)
T ss_pred EcCcEEEECCCceeCCCCcHHHHHHHHHhccc-------cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHH-H
Confidence 56777776655 35799999988888765532 246799999999999999887764 45799999999998 9
Q ss_pred HHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298 194 VLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 194 ~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~ 243 (299)
.+++|++ ++..+++.++.+|+.+.. ..++||+|++||||..
T Consensus 147 ~a~~n~~-~~~~~~i~~~~~d~~~~~--------~~~~fD~Iv~npPy~~ 187 (275)
T PRK09328 147 VARRNAK-HGLGARVEFLQGDWFEPL--------PGGRFDLIVSNPPYIP 187 (275)
T ss_pred HHHHHHH-hCCCCcEEEEEccccCcC--------CCCceeEEEECCCcCC
Confidence 9999998 333456889999985432 1368999999999975
No 35
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.37 E-value=5e-12 Score=123.07 Aligned_cols=112 Identities=17% Similarity=0.184 Sum_probs=86.8
Q ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHH
Q 022298 118 RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLI 196 (299)
Q Consensus 118 Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~ 196 (299)
+..+....|.+.+-..|.-.+.+...+.. ..+.+|||+|||+|.+|+.+++++ ..+|++||.|+.|+ +.++
T Consensus 198 ~~~~~~~~gVFs~~~LD~GtrllL~~lp~-------~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av-~~A~ 269 (378)
T PRK15001 198 DWTIHNHANVFSRTGLDIGARFFMQHLPE-------NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAV-ASSR 269 (378)
T ss_pred eEEEEecCCccCCCCcChHHHHHHHhCCc-------ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHH-HHHH
Confidence 34455566766677788777777776643 124699999999999999988874 45899999999998 9999
Q ss_pred HHHHHhCCC--CcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCC
Q 022298 197 PNLEWTGFL--DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD 245 (299)
Q Consensus 197 ~N~~~~g~~--~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~ 245 (299)
+|++.++.. ++++++.+|+.+.+ ...+||+|++||||..+.
T Consensus 270 ~N~~~n~~~~~~~v~~~~~D~l~~~--------~~~~fDlIlsNPPfh~~~ 312 (378)
T PRK15001 270 LNVETNMPEALDRCEFMINNALSGV--------EPFRFNAVLCNPPFHQQH 312 (378)
T ss_pred HHHHHcCcccCceEEEEEccccccC--------CCCCEEEEEECcCcccCc
Confidence 999988753 25788888876532 135899999999998753
No 36
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.36 E-value=3.9e-12 Score=111.88 Aligned_cols=101 Identities=20% Similarity=0.158 Sum_probs=82.7
Q ss_pred CCCCCCCCH--HHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHH
Q 022298 125 KGMDVRPMM--EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEW 201 (299)
Q Consensus 125 ~~~~~RPtt--d~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~ 201 (299)
....+||++ +.+++.+++.+.... .+.+.+|||+|||+|.+++.++..+ ..+|++||.|+.++ +.+++|++.
T Consensus 14 ~~~l~~~~~~~~~~~~~~~d~i~~~~----~~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~-~~a~~~~~~ 88 (181)
T TIGR00138 14 RFNLTSLKTPEEIWERHILDSLKLLE----YLDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKV-AFLREVKAE 88 (181)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHH----hcCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHH-HHHHHHHHH
Confidence 334589999 899999999875321 1468899999999999999876543 45799999999998 999999999
Q ss_pred hCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcC
Q 022298 202 TGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP 239 (299)
Q Consensus 202 ~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDP 239 (299)
+++.+ ++++++|+.++. ..++||+|+++.
T Consensus 89 ~~~~~-i~~i~~d~~~~~--------~~~~fD~I~s~~ 117 (181)
T TIGR00138 89 LGLNN-VEIVNGRAEDFQ--------HEEQFDVITSRA 117 (181)
T ss_pred hCCCC-eEEEecchhhcc--------ccCCccEEEehh
Confidence 98865 899999988752 136899999986
No 37
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.36 E-value=4.4e-12 Score=122.40 Aligned_cols=120 Identities=20% Similarity=0.196 Sum_probs=74.2
Q ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 022298 118 RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP 197 (299)
Q Consensus 118 Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~ 197 (299)
+..+.++++.+..+.+. +.+.+++.+....+ ..+..+||||||+|++|+.+ +..+.+|++||.++.|+ +.+++
T Consensus 164 ~~~~~~~~~sFfQvN~~-~~~~l~~~~~~~l~----~~~~~vlDlycG~G~fsl~l-a~~~~~V~gvE~~~~av-~~A~~ 236 (352)
T PF05958_consen 164 GLSFRISPGSFFQVNPE-QNEKLYEQALEWLD----LSKGDVLDLYCGVGTFSLPL-AKKAKKVIGVEIVEEAV-EDARE 236 (352)
T ss_dssp TEEEEEETTS---SBHH-HHHHHHHHHHHHCT----T-TTEEEEES-TTTCCHHHH-HCCSSEEEEEES-HHHH-HHHHH
T ss_pred ceEEEECCCcCccCcHH-HHHHHHHHHHHHhh----cCCCcEEEEeecCCHHHHHH-HhhCCeEEEeeCCHHHH-HHHHH
Confidence 45566666666677766 45555555443311 22348999999999999965 55566899999999998 99999
Q ss_pred HHHHhCCCCcEEEEEcchhhHHHHHhh------hc---CCCCCeeEEEEcCCCCCCC
Q 022298 198 NLEWTGFLDVSSIHTVRVETFLERAEQ------FV---GKDGPFDYMSVTPPYTAVD 245 (299)
Q Consensus 198 N~~~~g~~~~~~vi~~D~~~~l~~~~~------~~---~~~~~fDlI~iDPPY~~~~ 245 (299)
|++.+++.| ++++++++.++...... +. .....+|+|++|||+..-.
T Consensus 237 Na~~N~i~n-~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 237 NAKLNGIDN-VEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp HHHHTT--S-EEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SC
T ss_pred HHHHcCCCc-ceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch
Confidence 999999975 89999888766432210 00 0123689999999998744
No 38
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.36 E-value=1.3e-11 Score=115.80 Aligned_cols=98 Identities=20% Similarity=0.250 Sum_probs=78.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC
Q 022298 124 PKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG 203 (299)
Q Consensus 124 p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g 203 (299)
+.|.+++||+....+.+-... ..+.+|||+|||||.+++.++..|+.+|+++|+|+.++ +.+++|++.++
T Consensus 137 aFgtG~h~tt~l~l~~l~~~~---------~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al-~~a~~n~~~n~ 206 (288)
T TIGR00406 137 AFGTGTHPTTSLCLEWLEDLD---------LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAV-ESARKNAELNQ 206 (288)
T ss_pred cccCCCCHHHHHHHHHHHhhc---------CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHHcC
Confidence 566678999988776553322 35789999999999999999889988999999999998 99999999999
Q ss_pred CCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298 204 FLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP 240 (299)
Q Consensus 204 ~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPP 240 (299)
+.+++.+...+.... ..++||+|++|..
T Consensus 207 ~~~~~~~~~~~~~~~---------~~~~fDlVvan~~ 234 (288)
T TIGR00406 207 VSDRLQVKLIYLEQP---------IEGKADVIVANIL 234 (288)
T ss_pred CCcceEEEecccccc---------cCCCceEEEEecC
Confidence 877676776663221 1368999999874
No 39
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.35 E-value=1.2e-11 Score=111.78 Aligned_cols=110 Identities=25% Similarity=0.302 Sum_probs=86.5
Q ss_pred eCCeEEecCCC-CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHH
Q 022298 116 ARRKKLLSPKG-MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSN 193 (299)
Q Consensus 116 ~~Gr~L~~p~~-~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~ 193 (299)
+.|..+....+ ...||.++.+.+.+++.+.. .+.+|||+|||+|.+++.++.. ...+++++|+++.++ +
T Consensus 55 ~~~~~~~~~~~~~~p~~~~~~l~~~~l~~~~~--------~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~-~ 125 (251)
T TIGR03534 55 FYGLDFKVSPGVLIPRPDTEELVEAALERLKK--------GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEAL-A 125 (251)
T ss_pred EeceEEEECCCcccCCCChHHHHHHHHHhccc--------CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHH-H
Confidence 34555555444 34688888887777766542 3569999999999999988875 344799999999998 9
Q ss_pred HHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298 194 VLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 194 ~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~ 243 (299)
.+++|++.+++. +++++++|+.+.+ ..++||+|++||||..
T Consensus 126 ~a~~~~~~~~~~-~~~~~~~d~~~~~--------~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 126 VARKNAARLGLD-NVTFLQSDWFEPL--------PGGKFDLIVSNPPYIP 166 (251)
T ss_pred HHHHHHHHcCCC-eEEEEECchhccC--------cCCceeEEEECCCCCc
Confidence 999999998885 4889999987643 1468999999999985
No 40
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.35 E-value=3.3e-12 Score=121.83 Aligned_cols=94 Identities=24% Similarity=0.224 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 022298 133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (299)
Q Consensus 133 td~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~ 212 (299)
...+..++.|.+.. ..+.+|||+|||||++.+|++..|+ +++++|+|+.++ +.++.|++.+++.+ +++++
T Consensus 167 ~~~la~~~~~l~~~-------~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~-~~a~~nl~~~g~~~-i~~~~ 236 (329)
T TIGR01177 167 DPKLARAMVNLARV-------TEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMV-AGARINLEHYGIED-FFVKR 236 (329)
T ss_pred CHHHHHHHHHHhCC-------CCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHH-HHHHHHHHHhCCCC-CeEEe
Confidence 34567777776543 2577999999999999999988876 699999999998 99999999999876 78899
Q ss_pred cchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298 213 VRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 213 ~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~ 243 (299)
+|+.+.- ...+.||+|++||||..
T Consensus 237 ~D~~~l~-------~~~~~~D~Iv~dPPyg~ 260 (329)
T TIGR01177 237 GDATKLP-------LSSESVDAIATDPPYGR 260 (329)
T ss_pred cchhcCC-------cccCCCCEEEECCCCcC
Confidence 9987642 12468999999999986
No 41
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.35 E-value=1.4e-11 Score=121.41 Aligned_cols=114 Identities=18% Similarity=0.134 Sum_probs=82.1
Q ss_pred CCeEEecCCCCCCCCCH---HHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHH
Q 022298 117 RRKKLLSPKGMDVRPMM---EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSN 193 (299)
Q Consensus 117 ~Gr~L~~p~~~~~RPtt---d~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~ 193 (299)
.|.++.+..+....... +.+.+.+..++.. ..+.+|||+|||+|.+++.++.. +.+|++||+|+.++ +
T Consensus 258 ~~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l~~-------~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av-~ 328 (431)
T TIGR00479 258 GDLSFSLSARDFFQVNSGQNEKLVDRALEALEL-------QGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESV-E 328 (431)
T ss_pred CCEEEEECCCceeecCHHHHHHHHHHHHHHhcc-------CCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHH-H
Confidence 36666665544433222 2333334343321 24579999999999999987665 45899999999998 9
Q ss_pred HHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298 194 VLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 194 ~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~ 243 (299)
.+++|++.+++. +++++++|+.+++.... .....||+|++|||+..
T Consensus 329 ~a~~n~~~~~~~-nv~~~~~d~~~~l~~~~---~~~~~~D~vi~dPPr~G 374 (431)
T TIGR00479 329 KAQQNAELNGIA-NVEFLAGTLETVLPKQP---WAGQIPDVLLLDPPRKG 374 (431)
T ss_pred HHHHHHHHhCCC-ceEEEeCCHHHHHHHHH---hcCCCCCEEEECcCCCC
Confidence 999999999985 48999999988764321 12357999999999864
No 42
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.34 E-value=1.1e-11 Score=120.81 Aligned_cols=76 Identities=24% Similarity=0.408 Sum_probs=66.2
Q ss_pred CCEEEEECCccchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298 156 PGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (299)
Q Consensus 156 ~~~VLDLfaGSGalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl 234 (299)
+.+|||+|||||.+|+.++. .|+.+|+++|+|+.|+ +.+++|++.|++.+ .+++++|+..++.. .++||+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av-~~a~~N~~~N~~~~-~~v~~~Da~~~l~~-------~~~fD~ 128 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAV-ELIKKNLELNGLEN-EKVFNKDANALLHE-------ERKFDV 128 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCc-eEEEhhhHHHHHhh-------cCCCCE
Confidence 46899999999999999865 5777899999999998 99999999999865 67999999887642 257999
Q ss_pred EEEcCC
Q 022298 235 MSVTPP 240 (299)
Q Consensus 235 I~iDPP 240 (299)
|++|||
T Consensus 129 V~lDP~ 134 (382)
T PRK04338 129 VDIDPF 134 (382)
T ss_pred EEECCC
Confidence 999996
No 43
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.34 E-value=8.1e-12 Score=110.15 Aligned_cols=94 Identities=19% Similarity=0.137 Sum_probs=79.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEE
Q 022298 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209 (299)
Q Consensus 131 Pttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~ 209 (299)
.|...+|-..++.|.. .++.+++|+|||||++++|++..| ..+|+++|.|++++ +.+++|++++|++ +++
T Consensus 17 ~TK~EIRal~ls~L~~-------~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~-~~~~~N~~~fg~~-n~~ 87 (187)
T COG2242 17 MTKEEIRALTLSKLRP-------RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEAL-ELIERNAARFGVD-NLE 87 (187)
T ss_pred CcHHHHHHHHHHhhCC-------CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHH-HHHHHHHHHhCCC-cEE
Confidence 5888899888898876 368899999999999999987433 45899999999998 9999999999975 499
Q ss_pred EEEcchhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298 210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPP 240 (299)
Q Consensus 210 vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPP 240 (299)
++.+|+.+.+... ..||.||+.==
T Consensus 88 vv~g~Ap~~L~~~-------~~~daiFIGGg 111 (187)
T COG2242 88 VVEGDAPEALPDL-------PSPDAIFIGGG 111 (187)
T ss_pred EEeccchHhhcCC-------CCCCEEEECCC
Confidence 9999999987532 37999998643
No 44
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.33 E-value=3.2e-12 Score=110.95 Aligned_cols=84 Identities=23% Similarity=0.309 Sum_probs=61.9
Q ss_pred EEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEE
Q 022298 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV 237 (299)
Q Consensus 158 ~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~i 237 (299)
.|+|+|||.|.-.|..+..+ .+|++||+|+..+ ++++.|++..|+.++++++++|+.+.+.... ....||+||+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~-~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~----~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERL-ECAKHNAEVYGVADNIDFICGDFFELLKRLK----SNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHH-HHHHHHHHHTT-GGGEEEEES-HHHHGGGB----------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEeCCHHHHHhhcc----ccccccEEEE
Confidence 69999999999999877764 5799999999998 9999999999998899999999998764321 1122899999
Q ss_pred cCCCCCCCeE
Q 022298 238 TPPYTAVDYE 247 (299)
Q Consensus 238 DPPY~~~~~~ 247 (299)
+||++..+|.
T Consensus 76 SPPWGGp~Y~ 85 (163)
T PF09445_consen 76 SPPWGGPSYS 85 (163)
T ss_dssp ---BSSGGGG
T ss_pred CCCCCCcccc
Confidence 9999986653
No 45
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=2.8e-12 Score=108.96 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=83.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEE
Q 022298 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209 (299)
Q Consensus 130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~ 209 (299)
-||...++.++...+.+-.+ +++|.+++|||||+|.+++.+.-.++..|+++|++++|+ ++..+|++.+.++ +.
T Consensus 26 Y~T~p~iAasM~~~Ih~Tyg---diEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeAL-EIf~rNaeEfEvq--id 99 (185)
T KOG3420|consen 26 YPTRPHIAASMLYTIHNTYG---DIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEAL-EIFTRNAEEFEVQ--ID 99 (185)
T ss_pred CCCcHHHHHHHHHHHHhhhc---cccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHH-HHHhhchHHhhhh--hh
Confidence 45555577777777655422 478999999999999999866556889999999999998 9999999999875 57
Q ss_pred EEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCC
Q 022298 210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD 245 (299)
Q Consensus 210 vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~ 245 (299)
++++|..+... .++.||.+++||||+...
T Consensus 100 lLqcdildle~-------~~g~fDtaviNppFGTk~ 128 (185)
T KOG3420|consen 100 LLQCDILDLEL-------KGGIFDTAVINPPFGTKK 128 (185)
T ss_pred eeeeeccchhc-------cCCeEeeEEecCCCCccc
Confidence 89999877542 258899999999999743
No 46
>PLN02672 methionine S-methyltransferase
Probab=99.33 E-value=8.3e-12 Score=134.29 Aligned_cols=117 Identities=13% Similarity=0.087 Sum_probs=89.7
Q ss_pred eeCCeEEecCCC-CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHH
Q 022298 115 KARRKKLLSPKG-MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVS 192 (299)
Q Consensus 115 k~~Gr~L~~p~~-~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~ 192 (299)
.|+|+.+.+-++ ..+||.|+.+.+. ++..... ...+.+|||+|||||.+++.++.+. ..+|+++|+|+.|+
T Consensus 83 ~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~~~~-----~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al- 155 (1082)
T PLN02672 83 NRKKLTMMEIPSIFIPEDWSFTFYEG-LNRHPDS-----IFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAV- 155 (1082)
T ss_pred EecCCceeeCCCcccCchhHHHHHHH-HHhcccc-----cCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHH-
Confidence 367888887665 4589999988877 3432110 1246799999999999999887753 46899999999998
Q ss_pred HHHHHHHHHhCCC---------------CcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298 193 NVLIPNLEWTGFL---------------DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV 244 (299)
Q Consensus 193 ~~a~~N~~~~g~~---------------~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~ 244 (299)
+.+++|++.++++ ++++++++|+.+.+.. ...+||+|+.||||-..
T Consensus 156 ~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~------~~~~fDlIVSNPPYI~~ 216 (1082)
T PLN02672 156 KVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD------NNIELDRIVGCIPQILN 216 (1082)
T ss_pred HHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccc------cCCceEEEEECCCcCCC
Confidence 9999999987542 4689999998876421 12379999999999864
No 47
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.30 E-value=7e-12 Score=119.83 Aligned_cols=100 Identities=27% Similarity=0.333 Sum_probs=81.7
Q ss_pred CCCC--HHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 022298 129 VRPM--MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206 (299)
Q Consensus 129 ~RPt--td~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~ 206 (299)
.+|+ ..++.+++.|.... .+|..|||.|||||++-+||--.|+ +|+++|++.+++ +.++.|++.+++.+
T Consensus 176 ~~p~s~~P~lAR~mVNLa~v-------~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv-~gak~Nl~~y~i~~ 246 (347)
T COG1041 176 FRPGSMDPRLARAMVNLARV-------KRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMV-RGAKINLEYYGIED 246 (347)
T ss_pred cCcCCcCHHHHHHHHHHhcc-------ccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHH-hhhhhhhhhhCcCc
Confidence 4554 35788999998765 4688999999999999999999998 599999999998 99999999999876
Q ss_pred cEEEEEc-chhhHHHHHhhhcCCCCCeeEEEEcCCCCCCC
Q 022298 207 VSSIHTV-RVETFLERAEQFVGKDGPFDYMSVTPPYTAVD 245 (299)
Q Consensus 207 ~~~vi~~-D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~ 245 (299)
+.++.. |+...- + .+..+|.|.+||||+...
T Consensus 247 -~~~~~~~Da~~lp--l-----~~~~vdaIatDPPYGrst 278 (347)
T COG1041 247 -YPVLKVLDATNLP--L-----RDNSVDAIATDPPYGRST 278 (347)
T ss_pred -eeEEEecccccCC--C-----CCCccceEEecCCCCccc
Confidence 555555 876542 1 234699999999999743
No 48
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.25 E-value=2.4e-11 Score=108.76 Aligned_cols=80 Identities=20% Similarity=0.319 Sum_probs=62.0
Q ss_pred CCCEEEEECCccchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
++..|+|+|||.|.+++.+++ +.+..|+++|+||.|+ +.+++|++.|++.+++.++++|+.+++. ...||
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~-~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--------~~~~d 171 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAV-EYLKENIRLNKVENRIEVINGDAREFLP--------EGKFD 171 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHH-HHHHHHHHHTT-TTTEEEEES-GGG-----------TT-EE
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHH-HHHHHHHHHcCCCCeEEEEcCCHHHhcC--------ccccC
Confidence 588999999999999999887 3456899999999998 9999999999999999999999998864 37899
Q ss_pred EEEEcCCCCC
Q 022298 234 YMSVTPPYTA 243 (299)
Q Consensus 234 lI~iDPPY~~ 243 (299)
-|+|+.|...
T Consensus 172 rvim~lp~~~ 181 (200)
T PF02475_consen 172 RVIMNLPESS 181 (200)
T ss_dssp EEEE--TSSG
T ss_pred EEEECChHHH
Confidence 9999999765
No 49
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.25 E-value=5.9e-11 Score=114.23 Aligned_cols=108 Identities=16% Similarity=0.223 Sum_probs=85.3
Q ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHH
Q 022298 118 RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLI 196 (299)
Q Consensus 118 Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~ 196 (299)
+..+...++.+.++..|.-.+.+++.+... ...+|||+|||+|.+++.++.++ ..+|+++|+|+.++ +.++
T Consensus 166 ~l~i~~~pgvFs~~~lD~gt~lLl~~l~~~-------~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al-~~A~ 237 (342)
T PRK09489 166 GLTVKTLPGVFSRDGLDVGSQLLLSTLTPH-------TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAAL-ESSR 237 (342)
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHhcccc-------CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHH-HHHH
Confidence 556777777776777777667777766532 34589999999999999988875 34799999999998 9999
Q ss_pred HHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298 197 PNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV 244 (299)
Q Consensus 197 ~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~ 244 (299)
+|++.+++. .+++.+|+.... .++||+|++||||..+
T Consensus 238 ~nl~~n~l~--~~~~~~D~~~~~---------~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 238 ATLAANGLE--GEVFASNVFSDI---------KGRFDMIISNPPFHDG 274 (342)
T ss_pred HHHHHcCCC--CEEEEccccccc---------CCCccEEEECCCccCC
Confidence 999999875 456778875432 3689999999999864
No 50
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.24 E-value=2.8e-11 Score=104.51 Aligned_cols=77 Identities=18% Similarity=0.165 Sum_probs=64.8
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl 234 (299)
.+.++||+|||+|.++.++++++ .+|++||+|+.++ +.+++|+.. .++++++++|+.++.. ....||+
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~-~~~~~~~~~---~~~v~ii~~D~~~~~~-------~~~~~d~ 80 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLA-PRLREKFAA---ADNLTVIHGDALKFDL-------PKLQPYK 80 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHH-HHHHHHhcc---CCCEEEEECchhcCCc-------cccCCCE
Confidence 46799999999999999999995 5799999999998 999999854 2458899999987631 1246999
Q ss_pred EEEcCCCCC
Q 022298 235 MSVTPPYTA 243 (299)
Q Consensus 235 I~iDPPY~~ 243 (299)
|+.||||..
T Consensus 81 vi~n~Py~~ 89 (169)
T smart00650 81 VVGNLPYNI 89 (169)
T ss_pred EEECCCccc
Confidence 999999985
No 51
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.24 E-value=5.6e-11 Score=94.39 Aligned_cols=76 Identities=24% Similarity=0.241 Sum_probs=64.0
Q ss_pred CCEEEEECCccchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298 156 PGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (299)
Q Consensus 156 ~~~VLDLfaGSGalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl 234 (299)
+.+|||+|||+|.++++++. ....+|++||+|+.++ +.+++|+...+..++++++++|+ .... ...++||+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~i~~~~~d~-~~~~------~~~~~~D~ 73 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEML-EIARERAAEEGLSDRITFVQGDA-EFDP------DFLEPFDL 73 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHH-HHHHHHHHHTTTTTTEEEEESCC-HGGT------TTSSCEEE
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEEECcc-ccCc------ccCCCCCE
Confidence 67999999999999999988 2444799999999998 99999997788878899999999 3221 12467999
Q ss_pred EEEcC
Q 022298 235 MSVTP 239 (299)
Q Consensus 235 I~iDP 239 (299)
|+++-
T Consensus 74 v~~~~ 78 (112)
T PF12847_consen 74 VICSG 78 (112)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 99988
No 52
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=3e-11 Score=119.78 Aligned_cols=125 Identities=17% Similarity=0.199 Sum_probs=95.4
Q ss_pred EEeeeeCCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHH
Q 022298 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWV 190 (299)
Q Consensus 111 Ii~Gk~~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~A 190 (299)
+|.-.+.|.++.++.+.+..--+. ..|.+++.+..+.+. -.+..+||+|||||.+|+ ++++|+.+|++||+++.|
T Consensus 343 ~I~E~l~~ltF~iSp~AFFQ~Nt~-~aevLys~i~e~~~l---~~~k~llDv~CGTG~igl-ala~~~~~ViGvEi~~~a 417 (534)
T KOG2187|consen 343 YITESLLGLTFRISPGAFFQTNTS-AAEVLYSTIGEWAGL---PADKTLLDVCCGTGTIGL-ALARGVKRVIGVEISPDA 417 (534)
T ss_pred EEEeecCCeEEEECCchhhccCcH-HHHHHHHHHHHHhCC---CCCcEEEEEeecCCceeh-hhhccccceeeeecChhh
Confidence 345567899999888765433333 567778877765432 246889999999999999 688999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee-EEEEcCCCCCC
Q 022298 191 VSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD-YMSVTPPYTAV 244 (299)
Q Consensus 191 l~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD-lI~iDPPY~~~ 244 (299)
+ +.|++|++.||++| ++++++.+++.+..+. ......-+ ++++|||...-
T Consensus 418 V-~dA~~nA~~NgisN-a~Fi~gqaE~~~~sl~--~~~~~~~~~v~iiDPpR~Gl 468 (534)
T KOG2187|consen 418 V-EDAEKNAQINGISN-ATFIVGQAEDLFPSLL--TPCCDSETLVAIIDPPRKGL 468 (534)
T ss_pred c-chhhhcchhcCccc-eeeeecchhhccchhc--ccCCCCCceEEEECCCcccc
Confidence 9 99999999999987 8999998887765442 11112335 88999999763
No 53
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.21 E-value=8.5e-11 Score=102.20 Aligned_cols=76 Identities=24% Similarity=0.400 Sum_probs=65.7
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl 234 (299)
.+.+|||+|||+|.+++.++.+|. +|+++|+|+.++ +.+++|++.++. +++++.+|+.+.. .++||+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~~~~---------~~~fD~ 85 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAV-KELRENAKLNNV--GLDVVMTDLFKGV---------RGKFDV 85 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHH-HHHHHHHHHcCC--ceEEEEccccccc---------CCcccE
Confidence 467899999999999999888887 899999999998 999999998876 3788889976542 258999
Q ss_pred EEEcCCCCC
Q 022298 235 MSVTPPYTA 243 (299)
Q Consensus 235 I~iDPPY~~ 243 (299)
|++||||..
T Consensus 86 Vi~n~p~~~ 94 (179)
T TIGR00537 86 ILFNPPYLP 94 (179)
T ss_pred EEECCCCCC
Confidence 999999964
No 54
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.21 E-value=1.3e-10 Score=111.41 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=74.3
Q ss_pred CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
.+|.+|+|+|||.|.++|.++..|+..|+++|+||.|+ +.+++|++.|++.+++..+++|+..+.... ..+|
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~-~~L~eNi~LN~v~~~v~~i~gD~rev~~~~-------~~aD 258 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAV-EYLKENIRLNKVEGRVEPILGDAREVAPEL-------GVAD 258 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHH-HHHHHHHHhcCccceeeEEeccHHHhhhcc-------ccCC
Confidence 35899999999999999999999987899999999998 999999999999988999999999987532 6799
Q ss_pred EEEEcCCCCC
Q 022298 234 YMSVTPPYTA 243 (299)
Q Consensus 234 lI~iDPPY~~ 243 (299)
-|+|+-|...
T Consensus 259 rIim~~p~~a 268 (341)
T COG2520 259 RIIMGLPKSA 268 (341)
T ss_pred EEEeCCCCcc
Confidence 9999999764
No 55
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.19 E-value=1.6e-10 Score=102.42 Aligned_cols=95 Identities=25% Similarity=0.239 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 022298 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208 (299)
Q Consensus 131 Pttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~ 208 (299)
.|...+|...+..+.. ..+.+|||+|||+|.++++++.. | ..+|+++|+++.++ +.+++|++.+++.+++
T Consensus 23 ~t~~~~r~~~l~~l~~-------~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~-~~a~~n~~~~g~~~~v 94 (198)
T PRK00377 23 MTKEEIRALALSKLRL-------RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAI-NLTRRNAEKFGVLNNI 94 (198)
T ss_pred CCHHHHHHHHHHHcCC-------CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHhCCCCCe
Confidence 5667787766665543 36789999999999999998764 3 45899999999998 9999999999966668
Q ss_pred EEEEcchhhHHHHHhhhcCCCCCeeEEEEcC
Q 022298 209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTP 239 (299)
Q Consensus 209 ~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDP 239 (299)
+++.+|+.+++... .+.||.||++.
T Consensus 95 ~~~~~d~~~~l~~~------~~~~D~V~~~~ 119 (198)
T PRK00377 95 VLIKGEAPEILFTI------NEKFDRIFIGG 119 (198)
T ss_pred EEEEechhhhHhhc------CCCCCEEEECC
Confidence 89999988765432 36899999975
No 56
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.19 E-value=1.8e-10 Score=105.76 Aligned_cols=92 Identities=22% Similarity=0.195 Sum_probs=71.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC
Q 022298 124 PKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG 203 (299)
Q Consensus 124 p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g 203 (299)
+.+.+.+||+..+.+.+-..+ ..+.+|||+|||+|.+++.++..|+.+|+++|+|+.++ +.+++|++.++
T Consensus 97 afgtg~h~tt~~~l~~l~~~~---------~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l-~~A~~n~~~~~ 166 (250)
T PRK00517 97 AFGTGTHPTTRLCLEALEKLV---------LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAV-EAARENAELNG 166 (250)
T ss_pred ccCCCCCHHHHHHHHHHHhhc---------CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHHcC
Confidence 556677899887766654332 25789999999999999988888988899999999998 99999999988
Q ss_pred CCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298 204 FLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP 240 (299)
Q Consensus 204 ~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPP 240 (299)
+.+.+.+..+| .+||+|++|..
T Consensus 167 ~~~~~~~~~~~---------------~~fD~Vvani~ 188 (250)
T PRK00517 167 VELNVYLPQGD---------------LKADVIVANIL 188 (250)
T ss_pred CCceEEEccCC---------------CCcCEEEEcCc
Confidence 75444332221 26999998863
No 57
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.18 E-value=6.4e-11 Score=114.64 Aligned_cols=81 Identities=20% Similarity=0.244 Sum_probs=70.3
Q ss_pred CCCEEEEECCccchHHHHHHHcCCC----------------------------------------EEEEEeCCHHHHHHH
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCS----------------------------------------EVHFVEMDPWVVSNV 194 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~----------------------------------------~V~~VD~n~~Al~~~ 194 (299)
.+..++|++||||++.|||+-++.. ..+++|+|++++ +.
T Consensus 191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i-~~ 269 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHI-EG 269 (381)
T ss_pred CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHH-HH
Confidence 3568999999999999999987742 377999999998 99
Q ss_pred HHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298 195 LIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 195 a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~ 243 (299)
++.|++..|+.+.+++.++|+.++-. ..+.+|+|++||||+.
T Consensus 270 Ak~NA~~AGv~d~I~f~~~d~~~l~~-------~~~~~gvvI~NPPYGe 311 (381)
T COG0116 270 AKANARAAGVGDLIEFKQADATDLKE-------PLEEYGVVISNPPYGE 311 (381)
T ss_pred HHHHHHhcCCCceEEEEEcchhhCCC-------CCCcCCEEEeCCCcch
Confidence 99999999999999999999887632 1158999999999996
No 58
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.18 E-value=2.5e-10 Score=99.91 Aligned_cols=93 Identities=25% Similarity=0.208 Sum_probs=76.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 022298 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208 (299)
Q Consensus 130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~ 208 (299)
-.|.+.+++.+++.+.. ..+.+|||+|||+|.+++++++++ ..+|+++|+|+.++ +.+++|++.+++. ++
T Consensus 13 ~~~~~~~r~~~~~~l~~-------~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~-~~a~~n~~~~~~~-~i 83 (187)
T PRK08287 13 PMTKEEVRALALSKLEL-------HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDAL-RLIKENRQRFGCG-NI 83 (187)
T ss_pred CCchHHHHHHHHHhcCC-------CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHhCCC-Ce
Confidence 36778899888888854 257899999999999999988764 35899999999998 9999999999875 48
Q ss_pred EEEEcchhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298 209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPP 240 (299)
Q Consensus 209 ~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPP 240 (299)
+++++|+...+ .+.||+|+++-.
T Consensus 84 ~~~~~d~~~~~---------~~~~D~v~~~~~ 106 (187)
T PRK08287 84 DIIPGEAPIEL---------PGKADAIFIGGS 106 (187)
T ss_pred EEEecCchhhc---------CcCCCEEEECCC
Confidence 89988874321 257999999854
No 59
>PHA03412 putative methyltransferase; Provisional
Probab=99.17 E-value=4.9e-11 Score=109.19 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=60.5
Q ss_pred CCCEEEEECCccchHHHHHHHc----CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR----GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr----Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~ 230 (299)
.+.+|||+|||||.+++.++.+ +..+|++||+|+.++ +++++|+. ++.++++|+..+. ..+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al-~~Ar~n~~------~~~~~~~D~~~~~--------~~~ 113 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYY-KLGKRIVP------EATWINADALTTE--------FDT 113 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHH-HHHHhhcc------CCEEEEcchhccc--------ccC
Confidence 3679999999999999987763 344899999999998 99999863 2678889987532 135
Q ss_pred CeeEEEEcCCCCC
Q 022298 231 PFDYMSVTPPYTA 243 (299)
Q Consensus 231 ~fDlI~iDPPY~~ 243 (299)
+||+|++||||..
T Consensus 114 ~FDlIIsNPPY~~ 126 (241)
T PHA03412 114 LFDMAISNPPFGK 126 (241)
T ss_pred CccEEEECCCCCC
Confidence 8999999999995
No 60
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.15 E-value=1.3e-10 Score=121.35 Aligned_cols=101 Identities=22% Similarity=0.272 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCC--------------------------------
Q 022298 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC-------------------------------- 178 (299)
Q Consensus 131 Pttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa-------------------------------- 178 (299)
|..+.+..++..... . ...+..++|+|||||++.|||+.++.
T Consensus 172 pl~etlAaa~l~~a~-w-----~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~ 245 (702)
T PRK11783 172 PLKENLAAAILLRSG-W-----PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQ 245 (702)
T ss_pred CCcHHHHHHHHHHcC-C-----CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHH
Confidence 444556666654322 1 02468999999999999999976311
Q ss_pred -----------CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298 179 -----------SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 179 -----------~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~ 243 (299)
.+++++|+|+.++ +.+++|++.+|+.+.+++.++|+.++... ...+.||+|++||||..
T Consensus 246 ~~~~~~~~~~~~~i~G~Did~~av-~~A~~N~~~~g~~~~i~~~~~D~~~~~~~-----~~~~~~d~IvtNPPYg~ 315 (702)
T PRK11783 246 ERARAGLAELPSKFYGSDIDPRVI-QAARKNARRAGVAELITFEVKDVADLKNP-----LPKGPTGLVISNPPYGE 315 (702)
T ss_pred HHHhhcccccCceEEEEECCHHHH-HHHHHHHHHcCCCcceEEEeCChhhcccc-----cccCCCCEEEECCCCcC
Confidence 2599999999998 99999999999988889999998875321 11246999999999986
No 61
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.14 E-value=7.6e-10 Score=97.66 Aligned_cols=98 Identities=18% Similarity=0.102 Sum_probs=78.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 022298 128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206 (299)
Q Consensus 128 ~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~ 206 (299)
+.++|...++..+++.+.. ..+.+|||+|||+|.++++++.. +..+|+++|+|+.++ +.+++|++.++..
T Consensus 20 ~~p~t~~~v~~~l~~~l~~-------~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~-~~a~~n~~~~~~~- 90 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRL-------EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVV-NLIRRNCDRFGVK- 90 (196)
T ss_pred CCCCCHHHHHHHHHHhcCC-------CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCC-
Confidence 4578888899888888853 25789999999999999998753 335799999999998 9999999999885
Q ss_pred cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298 207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP 240 (299)
Q Consensus 207 ~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPP 240 (299)
+++++.+|+.+.+... ...+|.+++|..
T Consensus 91 ~v~~~~~d~~~~~~~~------~~~~d~v~~~~~ 118 (196)
T PRK07402 91 NVEVIEGSAPECLAQL------APAPDRVCIEGG 118 (196)
T ss_pred CeEEEECchHHHHhhC------CCCCCEEEEECC
Confidence 4889999987654321 235788888753
No 62
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.11 E-value=4.5e-10 Score=107.25 Aligned_cols=140 Identities=16% Similarity=0.110 Sum_probs=87.4
Q ss_pred ccccccceEEEEeeeeCCeEE-ecCCCCCCCCCHHHHH--HHHHHHHHhc--CCCCCCCCCCEEEEECCccchHHHHHHH
Q 022298 101 EERTTHRLLQVLGGKARRKKL-LSPKGMDVRPMMEVVK--GAAFDILQSA--GGCPASLRPGRWLDLYSGTGSVGIEAIS 175 (299)
Q Consensus 101 ~p~~~~~~mrIi~Gk~~Gr~L-~~p~~~~~RPttd~Vr--ealfn~L~~~--~~~~~~~~~~~VLDLfaGSGalgIEAlS 175 (299)
+|.....+-+.+--...|... .+|.+.-.-|-.-|+- ..+.+.|... ...+ .-.+.++||+|||+|.+..-++.
T Consensus 56 ~~~Av~~LnkalL~~~ygl~~wdip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p-~~~~~~vLDIGtGag~I~~lLa~ 134 (321)
T PRK11727 56 NPLAVKALNKALLAHFYGVAHWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIP-RGANVRVLDIGVGANCIYPLIGV 134 (321)
T ss_pred CHHHHHHHHHHHHHHhcCCCcccCCCCCcCCCCCcHHHHHHHHHHHhcccccccCC-CCCCceEEEecCCccHHHHHHHh
Confidence 444443333333334556663 6788865444443422 2233333221 0000 01357999999999988766554
Q ss_pred c-CCCEEEEEeCCHHHHHHHHHHHHHHh-CCCCcEEEEE-cchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCC
Q 022298 176 R-GCSEVHFVEMDPWVVSNVLIPNLEWT-GFLDVSSIHT-VRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD 245 (299)
Q Consensus 176 r-Ga~~V~~VD~n~~Al~~~a~~N~~~~-g~~~~~~vi~-~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~ 245 (299)
+ ...+++++|+|+.|+ +.+++|++.+ ++.++++++. .|...+.... ....+.||+|++||||....
T Consensus 135 ~~~~~~~~atDId~~Al-~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i---~~~~~~fDlivcNPPf~~s~ 203 (321)
T PRK11727 135 HEYGWRFVGSDIDPQAL-ASAQAIISANPGLNGAIRLRLQKDSKAIFKGI---IHKNERFDATLCNPPFHASA 203 (321)
T ss_pred hCCCCEEEEEeCCHHHH-HHHHHHHHhccCCcCcEEEEEccchhhhhhcc---cccCCceEEEEeCCCCcCcc
Confidence 3 234799999999998 9999999999 8988888764 4444433221 11246899999999998643
No 63
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.09 E-value=5.2e-10 Score=103.77 Aligned_cols=80 Identities=20% Similarity=0.268 Sum_probs=66.5
Q ss_pred CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f 232 (299)
++.+|||+|||+|..++.++.+ ....|+++|+++..+ +.+++|++.+++.+ +++++.|+..+... .+.|
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l-~~~~~n~~~~g~~~-v~~~~~D~~~~~~~-------~~~f 141 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRT-KVLIANINRCGVLN-VAVTNFDGRVFGAA-------VPKF 141 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHH-HHHHHHHHHcCCCc-EEEecCCHHHhhhh-------ccCC
Confidence 5789999999999999887653 234799999999998 99999999999865 88999998765321 2569
Q ss_pred eEEEEcCCCCC
Q 022298 233 DYMSVTPPYTA 243 (299)
Q Consensus 233 DlI~iDPPY~~ 243 (299)
|.|++|||+..
T Consensus 142 D~Vl~D~Pcsg 152 (264)
T TIGR00446 142 DAILLDAPCSG 152 (264)
T ss_pred CEEEEcCCCCC
Confidence 99999999874
No 64
>PHA03411 putative methyltransferase; Provisional
Probab=99.07 E-value=3.9e-10 Score=105.41 Aligned_cols=74 Identities=24% Similarity=0.342 Sum_probs=61.3
Q ss_pred CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
...+|||+|||+|.+++.++.+. ..+|++||+|+.++ +.+++|.. +++++++|+.++.. ..+||
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al-~~Ar~n~~------~v~~v~~D~~e~~~--------~~kFD 128 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFA-RIGKRLLP------EAEWITSDVFEFES--------NEKFD 128 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHhCc------CCEEEECchhhhcc--------cCCCc
Confidence 35799999999999999887753 45899999999998 99988741 36789999987641 36899
Q ss_pred EEEEcCCCCC
Q 022298 234 YMSVTPPYTA 243 (299)
Q Consensus 234 lI~iDPPY~~ 243 (299)
+|++||||..
T Consensus 129 lIIsNPPF~~ 138 (279)
T PHA03411 129 VVISNPPFGK 138 (279)
T ss_pred EEEEcCCccc
Confidence 9999999985
No 65
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.05 E-value=6.7e-10 Score=110.10 Aligned_cols=81 Identities=14% Similarity=0.198 Sum_probs=68.2
Q ss_pred CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f 232 (299)
++.+|||+|||+|..++.++.+ +..+|+++|+++.++ +.+++|++.+|+.+ ++++++|+.++.... .+.|
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l-~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~------~~~f 321 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKL-KLIEENAKRLGLTN-IETKALDARKVHEKF------AEKF 321 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCe-EEEEeCCcccccchh------cccC
Confidence 4689999999999999988774 345899999999998 99999999999866 899999987754221 2579
Q ss_pred eEEEEcCCCCC
Q 022298 233 DYMSVTPPYTA 243 (299)
Q Consensus 233 DlI~iDPPY~~ 243 (299)
|+|++|||+..
T Consensus 322 D~Vl~D~Pcsg 332 (444)
T PRK14902 322 DKILVDAPCSG 332 (444)
T ss_pred CEEEEcCCCCC
Confidence 99999999763
No 66
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.03 E-value=1.7e-09 Score=98.74 Aligned_cols=84 Identities=12% Similarity=0.054 Sum_probs=67.9
Q ss_pred CCCEEEEECCccchHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298 155 RPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlS--rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f 232 (299)
...+|||+|||+|.-++..+. .+..+|+++|+|++++ +.+++|++.+|+.++++++.+|+.+.+..+.. ....++|
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~-~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~-~~~~~~f 145 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAY-EVGLEFIKKAGVDHKINFIQSDALSALDQLLN-NDPKPEF 145 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEccHHHHHHHHHh-CCCCCCC
Confidence 578999999999987665443 3456899999999998 99999999999988899999999998765410 0113589
Q ss_pred eEEEEcCC
Q 022298 233 DYMSVTPP 240 (299)
Q Consensus 233 DlI~iDPP 240 (299)
|+||+|.+
T Consensus 146 D~VfiDa~ 153 (234)
T PLN02781 146 DFAFVDAD 153 (234)
T ss_pred CEEEECCC
Confidence 99999953
No 67
>PRK14968 putative methyltransferase; Provisional
Probab=99.03 E-value=1.9e-09 Score=93.09 Aligned_cols=79 Identities=23% Similarity=0.373 Sum_probs=66.5
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCc-EEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV-SSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~-~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
++.++||+|||+|.+++.++.++ .+++++|.++.++ +.+++|++.++..++ +.++.+|+.+.+ ....||
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~-~~a~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~d 92 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAV-ECAKCNAKLNNIRNNGVEVIRSDLFEPF--------RGDKFD 92 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHH-HHHHHHHHHcCCCCcceEEEeccccccc--------cccCce
Confidence 57799999999999999988886 4799999999998 999999998887654 778888876533 124799
Q ss_pred EEEEcCCCCC
Q 022298 234 YMSVTPPYTA 243 (299)
Q Consensus 234 lI~iDPPY~~ 243 (299)
+|++||||..
T Consensus 93 ~vi~n~p~~~ 102 (188)
T PRK14968 93 VILFNPPYLP 102 (188)
T ss_pred EEEECCCcCC
Confidence 9999999965
No 68
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.02 E-value=1.1e-09 Score=108.04 Aligned_cols=81 Identities=17% Similarity=0.225 Sum_probs=67.2
Q ss_pred CCCEEEEECCccchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa-~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
++.+|||+|||+|..+++++.++. .+|+++|+++.++ +.+++|++.+|+. ++++++|+.+..... ..++||
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l-~~~~~n~~~~g~~--~~~~~~D~~~~~~~~-----~~~~fD 315 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRL-ERVRENLQRLGLK--ATVIVGDARDPAQWW-----DGQPFD 315 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHH-HHHHHHHHHcCCC--eEEEEcCcccchhhc-----ccCCCC
Confidence 578999999999999999888753 5899999999998 9999999999874 578899987643211 135799
Q ss_pred EEEEcCCCCC
Q 022298 234 YMSVTPPYTA 243 (299)
Q Consensus 234 lI~iDPPY~~ 243 (299)
.|++||||..
T Consensus 316 ~Vl~D~Pcs~ 325 (427)
T PRK10901 316 RILLDAPCSA 325 (427)
T ss_pred EEEECCCCCc
Confidence 9999999864
No 69
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.00 E-value=2.4e-09 Score=101.14 Aligned_cols=78 Identities=18% Similarity=0.173 Sum_probs=67.5
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl 234 (299)
.+.+|||+|||+|+++.+++.++. +|+++|+|+.++ +.+++|+...+..++++++++|+.+.. ...||.
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li-~~l~~~~~~~~~~~~v~ii~~Dal~~~---------~~~~d~ 104 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMV-AELKKRFQNSPLASKLEVIEGDALKTE---------FPYFDV 104 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHH-HHHHHHHHhcCCCCcEEEEECCHhhhc---------ccccCE
Confidence 578999999999999999888865 699999999998 999999988775567999999987642 246899
Q ss_pred EEEcCCCCC
Q 022298 235 MSVTPPYTA 243 (299)
Q Consensus 235 I~iDPPY~~ 243 (299)
|+.|+||..
T Consensus 105 VvaNlPY~I 113 (294)
T PTZ00338 105 CVANVPYQI 113 (294)
T ss_pred EEecCCccc
Confidence 999999985
No 70
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.00 E-value=2.5e-09 Score=105.89 Aligned_cols=80 Identities=16% Similarity=0.164 Sum_probs=67.0
Q ss_pred CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f 232 (299)
++.+|||+|||+|..++.++.. +..+|+++|+++..+ +.+++|++.+|+.+ ++++++|+..+.... .+.|
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl-~~~~~n~~r~g~~~-v~~~~~Da~~l~~~~------~~~f 308 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKI-QLVEKHAKRLKLSS-IEIKIADAERLTEYV------QDTF 308 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHHHHcCCCe-EEEEECchhhhhhhh------hccC
Confidence 5789999999999999877664 345799999999998 99999999999864 889999987653221 3579
Q ss_pred eEEEEcCCCC
Q 022298 233 DYMSVTPPYT 242 (299)
Q Consensus 233 DlI~iDPPY~ 242 (299)
|.|++|||+.
T Consensus 309 D~Vl~DaPCs 318 (431)
T PRK14903 309 DRILVDAPCT 318 (431)
T ss_pred CEEEECCCCC
Confidence 9999999995
No 71
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.00 E-value=5.4e-09 Score=83.81 Aligned_cols=78 Identities=21% Similarity=0.148 Sum_probs=63.7
Q ss_pred CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
.+.+|||+|||+|.++++++++ +..+|+++|.++.++ +.+++|++.++..+ ++++.+|+...+... .++||
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~D 90 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEAL-RLIERNARRFGVSN-IVIVEGDAPEALEDS------LPEPD 90 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHH-HHHHHHHHHhCCCc-eEEEeccccccChhh------cCCCC
Confidence 4679999999999999999886 346899999999998 99999999988754 788888876533221 35899
Q ss_pred EEEEcCC
Q 022298 234 YMSVTPP 240 (299)
Q Consensus 234 lI~iDPP 240 (299)
+|+++.+
T Consensus 91 ~v~~~~~ 97 (124)
T TIGR02469 91 RVFIGGS 97 (124)
T ss_pred EEEECCc
Confidence 9999764
No 72
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.00 E-value=3.3e-09 Score=89.63 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=65.2
Q ss_pred CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f 232 (299)
++.+|||+|||+|.+++.++.+ ...++++||+|+.++ +.++++++.+++. +++++++|+.+ +... ..+.|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i-~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~-----~~~~~ 74 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMI-EYAKKRAKELGLD-NIEFIQGDIED-LPQE-----LEEKF 74 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHH-HHHHHHHHHTTST-TEEEEESBTTC-GCGC-----SSTTE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHH-HHhhccccccccc-ccceEEeehhc-cccc-----cCCCe
Confidence 4789999999999999988842 245799999999998 9999999999987 59999999988 3210 01689
Q ss_pred eEEEEcCCC
Q 022298 233 DYMSVTPPY 241 (299)
Q Consensus 233 DlI~iDPPY 241 (299)
|+|++++++
T Consensus 75 D~I~~~~~l 83 (152)
T PF13847_consen 75 DIIISNGVL 83 (152)
T ss_dssp EEEEEESTG
T ss_pred eEEEEcCch
Confidence 999999887
No 73
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.98 E-value=4e-09 Score=94.56 Aligned_cols=80 Identities=16% Similarity=0.016 Sum_probs=65.3
Q ss_pred CCCEEEEECCccchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa--~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f 232 (299)
++.+|||+|||+|.++..++.+.. .+|++||+++.++ +.+++|++.+++. +++++.+|+.+.+. ....|
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~-~~A~~~~~~~g~~-~v~~~~~d~~~~~~-------~~~~f 147 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELA-EKAERRLRKLGLD-NVIVIVGDGTQGWE-------PLAPY 147 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHCCCC-CeEEEECCcccCCc-------ccCCC
Confidence 578999999999999987666532 3699999999998 9999999999985 48899999876432 13589
Q ss_pred eEEEEcCCCCC
Q 022298 233 DYMSVTPPYTA 243 (299)
Q Consensus 233 DlI~iDPPY~~ 243 (299)
|+|++|++...
T Consensus 148 D~Ii~~~~~~~ 158 (215)
T TIGR00080 148 DRIYVTAAGPK 158 (215)
T ss_pred CEEEEcCCccc
Confidence 99999987543
No 74
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.96 E-value=6.6e-09 Score=92.06 Aligned_cols=93 Identities=24% Similarity=0.174 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 022298 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (299)
Q Consensus 134 d~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~ 212 (299)
+..++.+++.+.....+ .++.+|||+|||+|.+++.++. ....+|+++|.++.++ +.+++|++.+++.+ +++++
T Consensus 27 ~~~~~~~~d~l~l~~~l---~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l-~~A~~~~~~~~l~~-i~~~~ 101 (187)
T PRK00107 27 ELWERHILDSLAIAPYL---PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKI-AFLREVAAELGLKN-VTVVH 101 (187)
T ss_pred HHHHHHHHHHHHHHhhc---CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHH-HHHHHHHHHcCCCC-EEEEe
Confidence 35666776765432111 1378999999999999998765 3445799999999998 99999999999866 99999
Q ss_pred cchhhHHHHHhhhcCCCCCeeEEEEcC
Q 022298 213 VRVETFLERAEQFVGKDGPFDYMSVTP 239 (299)
Q Consensus 213 ~D~~~~l~~~~~~~~~~~~fDlI~iDP 239 (299)
+|+.++. . .++||+|+++-
T Consensus 102 ~d~~~~~-------~-~~~fDlV~~~~ 120 (187)
T PRK00107 102 GRAEEFG-------Q-EEKFDVVTSRA 120 (187)
T ss_pred ccHhhCC-------C-CCCccEEEEcc
Confidence 9987742 1 36899999963
No 75
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.96 E-value=2.2e-09 Score=96.91 Aligned_cols=108 Identities=16% Similarity=0.193 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEE
Q 022298 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209 (299)
Q Consensus 130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~ 209 (299)
--|.+++++++-+..... .....++|.|||.|.-.+-.+.+|+ .|++||+||.-+ .++++|++..|+.++++
T Consensus 75 svTpe~ia~~iA~~v~~~------~~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikI-a~AkhNaeiYGI~~rIt 146 (263)
T KOG2730|consen 75 SVTPEKIAEHIANRVVAC------MNAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKI-ACARHNAEVYGVPDRIT 146 (263)
T ss_pred EeccHHHHHHHHHHHHHh------cCcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHH-HHHhccceeecCCceeE
Confidence 345556667766555432 2457899999999999999888888 599999999998 99999999999999999
Q ss_pred EEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCCeEE
Q 022298 210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEV 248 (299)
Q Consensus 210 vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~~~~ 248 (299)
+++||+.+....+. + ....+|+||+-||++...|..
T Consensus 147 FI~GD~ld~~~~lq-~--~K~~~~~vf~sppwggp~y~~ 182 (263)
T KOG2730|consen 147 FICGDFLDLASKLK-A--DKIKYDCVFLSPPWGGPSYLR 182 (263)
T ss_pred EEechHHHHHHHHh-h--hhheeeeeecCCCCCCcchhh
Confidence 99999988776542 2 234589999999999877654
No 76
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.94 E-value=3.7e-09 Score=104.96 Aligned_cols=79 Identities=14% Similarity=0.129 Sum_probs=66.0
Q ss_pred CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f 232 (299)
++.+|||+|||+|..++.++.+ +..+|+++|+|+.++ +.+++|++.+|+. +++++++|+.++. ....|
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l-~~~~~~~~~~g~~-~v~~~~~Da~~~~--------~~~~f 319 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKL-EKIRSHASALGIT-IIETIEGDARSFS--------PEEQP 319 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHHHHhCCC-eEEEEeCcccccc--------cCCCC
Confidence 5789999999999998876653 334799999999998 9999999999985 4889999987653 13579
Q ss_pred eEEEEcCCCCC
Q 022298 233 DYMSVTPPYTA 243 (299)
Q Consensus 233 DlI~iDPPY~~ 243 (299)
|.|++|||+..
T Consensus 320 D~Vl~D~Pcsg 330 (445)
T PRK14904 320 DAILLDAPCTG 330 (445)
T ss_pred CEEEEcCCCCC
Confidence 99999999854
No 77
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.93 E-value=5.4e-09 Score=96.61 Aligned_cols=87 Identities=17% Similarity=0.141 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022298 136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV 215 (299)
Q Consensus 136 Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~ 215 (299)
+.+.+.+.+.. ..+.+|||+|||+|.++++++.++. +|+++|+|+.++ +.+++|+.. .++++++++|+
T Consensus 17 ~~~~iv~~~~~-------~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~-~~l~~~~~~---~~~v~ii~~D~ 84 (258)
T PRK14896 17 VVDRIVEYAED-------TDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLA-EFLRDDEIA---AGNVEIIEGDA 84 (258)
T ss_pred HHHHHHHhcCC-------CCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHH-HHHHHHhcc---CCCEEEEEecc
Confidence 55555554432 3578999999999999999988864 799999999998 999988754 24589999998
Q ss_pred hhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298 216 ETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 216 ~~~l~~~~~~~~~~~~fDlI~iDPPY~~ 243 (299)
.++. ...||.|+.||||..
T Consensus 85 ~~~~---------~~~~d~Vv~NlPy~i 103 (258)
T PRK14896 85 LKVD---------LPEFNKVVSNLPYQI 103 (258)
T ss_pred ccCC---------chhceEEEEcCCccc
Confidence 7642 145899999999985
No 78
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.91 E-value=4e-09 Score=98.23 Aligned_cols=89 Identities=16% Similarity=0.097 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022298 135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR 214 (299)
Q Consensus 135 ~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D 214 (299)
.+.+.+.+.+.. .++.+|||+|||+|.++..++.++. +|+++|+|+.++ +.+++|+.. ++++++++|
T Consensus 29 ~i~~~i~~~l~~-------~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~-~~~~~~~~~----~~v~~i~~D 95 (272)
T PRK00274 29 NILDKIVDAAGP-------QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLA-PILAETFAE----DNLTIIEGD 95 (272)
T ss_pred HHHHHHHHhcCC-------CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHH-HHHHHhhcc----CceEEEECh
Confidence 355555555532 3578999999999999999988876 799999999998 999888742 458899999
Q ss_pred hhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298 215 VETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 215 ~~~~l~~~~~~~~~~~~fDlI~iDPPY~~ 243 (299)
+.++.-. .-.+|.|+.||||..
T Consensus 96 ~~~~~~~-------~~~~~~vv~NlPY~i 117 (272)
T PRK00274 96 ALKVDLS-------ELQPLKVVANLPYNI 117 (272)
T ss_pred hhcCCHH-------HcCcceEEEeCCccc
Confidence 8875211 011599999999975
No 79
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.90 E-value=7.2e-09 Score=102.58 Aligned_cols=84 Identities=18% Similarity=0.163 Sum_probs=67.8
Q ss_pred CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f 232 (299)
++.+|||+|||+|..++.++.+ +..+|+++|+++..+ +.+++|++.+|+.+ ++++++|+..+.... ....+.|
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl-~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~---~~~~~~f 326 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRL-KKLQENAQRLGLKS-IKILAADSRNLLELK---PQWRGYF 326 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHH-HHHHHHHHHcCCCe-EEEEeCChhhccccc---ccccccC
Confidence 5789999999999999887764 234799999999998 99999999999875 889999987653210 0013579
Q ss_pred eEEEEcCCCCC
Q 022298 233 DYMSVTPPYTA 243 (299)
Q Consensus 233 DlI~iDPPY~~ 243 (299)
|.|++|||+..
T Consensus 327 D~Vl~DaPCSg 337 (434)
T PRK14901 327 DRILLDAPCSG 337 (434)
T ss_pred CEEEEeCCCCc
Confidence 99999999754
No 80
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.88 E-value=1.5e-08 Score=90.46 Aligned_cols=80 Identities=23% Similarity=0.211 Sum_probs=65.3
Q ss_pred CCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f 232 (299)
++.+|||+|||||.++..++.. + ..+|+++|+++.++ +.+++|++.+++.++++++.+|+.+.+. ...+|
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~-~~a~~~l~~~~~~~~v~~~~~d~~~~~~-------~~~~f 143 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELA-IYAAQNIERLGYWGVVEVYHGDGKRGLE-------KHAPF 143 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCCcEEEEECCcccCCc-------cCCCc
Confidence 5689999999999999776653 2 34799999999998 9999999999987778999999876432 13589
Q ss_pred eEEEEcCCCC
Q 022298 233 DYMSVTPPYT 242 (299)
Q Consensus 233 DlI~iDPPY~ 242 (299)
|+|+++-...
T Consensus 144 D~Ii~~~~~~ 153 (205)
T PRK13944 144 DAIIVTAAAS 153 (205)
T ss_pred cEEEEccCcc
Confidence 9999997643
No 81
>PRK00811 spermidine synthase; Provisional
Probab=98.88 E-value=1.2e-08 Score=95.72 Aligned_cols=81 Identities=22% Similarity=0.249 Sum_probs=67.7
Q ss_pred CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhC--C--CCcEEEEEcchhhHHHHHhhhcCCC
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG--F--LDVSSIHTVRVETFLERAEQFVGKD 229 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g--~--~~~~~vi~~D~~~~l~~~~~~~~~~ 229 (299)
...+|||+|||+|.++.+++++ +..+|++||+|+..+ +.+++++...+ . ..+++++.+|+..++... .
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv-~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~------~ 148 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVV-EVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET------E 148 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHH-HHHHHHhHHhccccccCCceEEEECchHHHHhhC------C
Confidence 4679999999999999999987 678999999999998 99999987543 2 357899999999988542 4
Q ss_pred CCeeEEEEcC--CCC
Q 022298 230 GPFDYMSVTP--PYT 242 (299)
Q Consensus 230 ~~fDlI~iDP--PY~ 242 (299)
++||+|++|. |+.
T Consensus 149 ~~yDvIi~D~~dp~~ 163 (283)
T PRK00811 149 NSFDVIIVDSTDPVG 163 (283)
T ss_pred CcccEEEECCCCCCC
Confidence 6899999994 553
No 82
>PLN02476 O-methyltransferase
Probab=98.88 E-value=2.9e-08 Score=93.13 Aligned_cols=87 Identities=16% Similarity=0.118 Sum_probs=71.1
Q ss_pred CCCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~ 231 (299)
....+|||+|+|+|..++.++.. + ..+++.+|.|++.+ +.+++|++..|+.++++++.+|+.+.+..+.. ....++
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~-~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~-~~~~~~ 194 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSL-EVAKRYYELAGVSHKVNVKHGLAAESLKSMIQ-NGEGSS 194 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHh-cccCCC
Confidence 35789999999999999987652 1 33699999999998 99999999999998899999999998865410 011358
Q ss_pred eeEEEEcCCCC
Q 022298 232 FDYMSVTPPYT 242 (299)
Q Consensus 232 fDlI~iDPPY~ 242 (299)
||+||+|.+-.
T Consensus 195 FD~VFIDa~K~ 205 (278)
T PLN02476 195 YDFAFVDADKR 205 (278)
T ss_pred CCEEEECCCHH
Confidence 99999999843
No 83
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.86 E-value=2e-08 Score=89.96 Aligned_cols=90 Identities=21% Similarity=0.240 Sum_probs=71.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEE
Q 022298 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210 (299)
Q Consensus 131 Pttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~v 210 (299)
+..+.+++.+++++... ...+.+|||+|||+|.++..++.+++ +|+++|+|+.++ +.+++++...+..+++++
T Consensus 36 ~~~~~~~~~~~~~l~~~-----~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i-~~a~~~~~~~~~~~~i~~ 108 (219)
T TIGR02021 36 EGRAAMRRKLLDWLPKD-----PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMV-QMARNRAQGRDVAGNVEF 108 (219)
T ss_pred HHHHHHHHHHHHHHhcC-----CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCCCCceEE
Confidence 44556777777777631 13578999999999999999888876 799999999998 999999987776556888
Q ss_pred EEcchhhHHHHHhhhcCCCCCeeEEEE
Q 022298 211 HTVRVETFLERAEQFVGKDGPFDYMSV 237 (299)
Q Consensus 211 i~~D~~~~l~~~~~~~~~~~~fDlI~i 237 (299)
..+|+... .++||+|++
T Consensus 109 ~~~d~~~~----------~~~fD~ii~ 125 (219)
T TIGR02021 109 EVNDLLSL----------CGEFDIVVC 125 (219)
T ss_pred EECChhhC----------CCCcCEEEE
Confidence 88987653 257998875
No 84
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.86 E-value=1.1e-08 Score=101.02 Aligned_cols=83 Identities=13% Similarity=0.143 Sum_probs=64.6
Q ss_pred CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
.+.+|||+|||+|..++.++.+ +..+|+++|+++..+ +.+++|++.+|+...+++..+|....... ...++||
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l-~~~~~n~~r~g~~~~v~~~~~d~~~~~~~-----~~~~~fD 311 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRL-KRVYENLKRLGLTIKAETKDGDGRGPSQW-----AENEQFD 311 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHHHHHHcCCCeEEEEecccccccccc-----ccccccC
Confidence 5789999999999999987764 445799999999998 99999999999863344466776432210 0136799
Q ss_pred EEEEcCCCCC
Q 022298 234 YMSVTPPYTA 243 (299)
Q Consensus 234 lI~iDPPY~~ 243 (299)
.|++|||+..
T Consensus 312 ~VllDaPcSg 321 (426)
T TIGR00563 312 RILLDAPCSA 321 (426)
T ss_pred EEEEcCCCCC
Confidence 9999999875
No 85
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.86 E-value=1.9e-08 Score=92.38 Aligned_cols=78 Identities=19% Similarity=0.249 Sum_probs=66.2
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl 234 (299)
.+.+|||+|||+|.+++.++.+|. +|+++|+++.++ +.+++|++..++.++++++++|+.++... ..+.||+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l-~~a~~~~~~~g~~~~v~~~~~d~~~l~~~------~~~~fD~ 115 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMI-QRAKQAAEAKGVSDNMQFIHCAAQDIAQH------LETPVDL 115 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHhcCCccceEEEEcCHHHHhhh------cCCCCCE
Confidence 467999999999999999888876 699999999998 99999999988877789999999876422 1468999
Q ss_pred EEEcCC
Q 022298 235 MSVTPP 240 (299)
Q Consensus 235 I~iDPP 240 (299)
|++.-.
T Consensus 116 V~~~~v 121 (255)
T PRK11036 116 ILFHAV 121 (255)
T ss_pred EEehhH
Confidence 997654
No 86
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.86 E-value=5.3e-09 Score=98.44 Aligned_cols=103 Identities=18% Similarity=0.133 Sum_probs=69.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc--------CCCEEEEEeCCHHHHHHHHHHHHH
Q 022298 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--------GCSEVHFVEMDPWVVSNVLIPNLE 200 (299)
Q Consensus 129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr--------Ga~~V~~VD~n~~Al~~~a~~N~~ 200 (299)
.-.|+.-+.+.+..++.. ..+.+|+|+|||||++-+++..+ ...+++++|+++.++ .+++.|+.
T Consensus 27 ~~~TP~~i~~l~~~~~~~-------~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~-~la~~nl~ 98 (311)
T PF02384_consen 27 QFYTPREIVDLMVKLLNP-------KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAV-ALAKLNLL 98 (311)
T ss_dssp GC---HHHHHHHHHHHTT--------TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHH-HHHHHHHH
T ss_pred eeehHHHHHHHHHhhhhc-------cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHH-HHHHhhhh
Confidence 345667777777777753 35678999999999999988762 455799999999998 99999998
Q ss_pred HhCCCCc-EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298 201 WTGFLDV-SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV 244 (299)
Q Consensus 201 ~~g~~~~-~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~ 244 (299)
..+.... ..+..+|....... ....+||+|++||||...
T Consensus 99 l~~~~~~~~~i~~~d~l~~~~~-----~~~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 99 LHGIDNSNINIIQGDSLENDKF-----IKNQKFDVIIGNPPFGSK 138 (311)
T ss_dssp HTTHHCBGCEEEES-TTTSHSC-----TST--EEEEEEE--CTCE
T ss_pred hhcccccccccccccccccccc-----ccccccccccCCCCcccc
Confidence 7765432 35788886543210 113689999999999985
No 87
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.84 E-value=2e-09 Score=98.10 Aligned_cols=83 Identities=29% Similarity=0.307 Sum_probs=70.1
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~-~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
++.+|||.|.|-|..+|||+.|||.+|+-||.|+..+ +++.-|==.-++. ..++++.+|+.++.+... +..||
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VL-eLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~-----D~sfD 207 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVL-ELAKLNPWSRELFEIAIKIILGDAYEVVKDFD-----DESFD 207 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeE-EeeccCCCCccccccccEEecccHHHHHhcCC-----ccccc
Confidence 6899999999999999999999999999999999998 8887774322322 247899999999987653 57899
Q ss_pred EEEEcCCCCC
Q 022298 234 YMSVTPPYTA 243 (299)
Q Consensus 234 lI~iDPPY~~ 243 (299)
.|+-|||.-.
T Consensus 208 aIiHDPPRfS 217 (287)
T COG2521 208 AIIHDPPRFS 217 (287)
T ss_pred eEeeCCCccc
Confidence 9999999765
No 88
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.80 E-value=3.3e-08 Score=88.79 Aligned_cols=90 Identities=17% Similarity=0.139 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEE
Q 022298 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211 (299)
Q Consensus 134 d~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga-~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi 211 (299)
..+...+...+.. .++.+|||+|||||.++..++.. |. .+|+++|++++.+ +.+++|++.+++. +++++
T Consensus 62 p~~~~~~~~~l~~-------~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~-~~a~~~l~~~g~~-~v~~~ 132 (212)
T PRK13942 62 IHMVAIMCELLDL-------KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELA-EKAKKTLKKLGYD-NVEVI 132 (212)
T ss_pred HHHHHHHHHHcCC-------CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCC-CeEEE
Confidence 3344445455542 35789999999999999766554 32 4899999999998 9999999999875 48999
Q ss_pred EcchhhHHHHHhhhcCCCCCeeEEEEcC
Q 022298 212 TVRVETFLERAEQFVGKDGPFDYMSVTP 239 (299)
Q Consensus 212 ~~D~~~~l~~~~~~~~~~~~fDlI~iDP 239 (299)
++|+..... ....||+|+++=
T Consensus 133 ~gd~~~~~~-------~~~~fD~I~~~~ 153 (212)
T PRK13942 133 VGDGTLGYE-------ENAPYDRIYVTA 153 (212)
T ss_pred ECCcccCCC-------cCCCcCEEEECC
Confidence 999865431 236899999874
No 89
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.77 E-value=6e-08 Score=85.79 Aligned_cols=80 Identities=14% Similarity=0.128 Sum_probs=65.6
Q ss_pred CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
...++||+|||+|.++++++.+. ...+++||+++.++ +.+++|++..++. +++++++|+.++.... ...+.+|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l-~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~----~~~~~~d 89 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIV-LAANNKANKLGLK-NLHVLCGDANELLDKF----FPDGSLS 89 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHH-HHHHHHHHHhCCC-CEEEEccCHHHHHHhh----CCCCcee
Confidence 35699999999999999887763 34799999999998 9999999998886 5899999998875432 1235799
Q ss_pred EEEEcCC
Q 022298 234 YMSVTPP 240 (299)
Q Consensus 234 lI~iDPP 240 (299)
.|++++|
T Consensus 90 ~v~~~~p 96 (194)
T TIGR00091 90 KVFLNFP 96 (194)
T ss_pred EEEEECC
Confidence 9999865
No 90
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.76 E-value=7.5e-08 Score=86.44 Aligned_cols=90 Identities=14% Similarity=0.128 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 022298 136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (299)
Q Consensus 136 Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~ 213 (299)
.++.+.+.+.. ..+.+|||+|||+|.++..++.. | ..+|+++|+++.++ +.+++|++..+.. +++++++
T Consensus 33 ~~~~~l~~l~~-------~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~-~v~~~~~ 103 (231)
T TIGR02752 33 WRKDTMKRMNV-------QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENML-SVGRQKVKDAGLH-NVELVHG 103 (231)
T ss_pred HHHHHHHhcCC-------CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHhcCCC-ceEEEEe
Confidence 44555555532 24789999999999999877654 3 34799999999998 9999999888774 5889999
Q ss_pred chhhHHHHHhhhcCCCCCeeEEEEcCCC
Q 022298 214 RVETFLERAEQFVGKDGPFDYMSVTPPY 241 (299)
Q Consensus 214 D~~~~l~~~~~~~~~~~~fDlI~iDPPY 241 (299)
|+.++. ...++||+|+++-..
T Consensus 104 d~~~~~-------~~~~~fD~V~~~~~l 124 (231)
T TIGR02752 104 NAMELP-------FDDNSFDYVTIGFGL 124 (231)
T ss_pred chhcCC-------CCCCCccEEEEeccc
Confidence 987642 124689999987554
No 91
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.75 E-value=6.8e-08 Score=88.78 Aligned_cols=88 Identities=19% Similarity=0.254 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 022298 135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (299)
Q Consensus 135 ~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~ 213 (299)
.+|+.+.+.+.. .+|.+|||+|||||-+++..+.. |..+|+++|+|+.++ +.+++-+...+..+ ++++.+
T Consensus 38 ~Wr~~~i~~~~~-------~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML-~~a~~k~~~~~~~~-i~fv~~ 108 (238)
T COG2226 38 LWRRALISLLGI-------KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESML-EVAREKLKKKGVQN-VEFVVG 108 (238)
T ss_pred HHHHHHHHhhCC-------CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHH-HHHHHHhhccCccc-eEEEEe
Confidence 467777666653 25899999999999999987654 556899999999998 99999998888777 999999
Q ss_pred chhhHHHHHhhhcCCCCCeeEEEEc
Q 022298 214 RVETFLERAEQFVGKDGPFDYMSVT 238 (299)
Q Consensus 214 D~~~~l~~~~~~~~~~~~fDlI~iD 238 (299)
|++... -+++.||+|.+.
T Consensus 109 dAe~LP-------f~D~sFD~vt~~ 126 (238)
T COG2226 109 DAENLP-------FPDNSFDAVTIS 126 (238)
T ss_pred chhhCC-------CCCCccCEEEee
Confidence 998752 346899999874
No 92
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.74 E-value=1.3e-07 Score=90.32 Aligned_cols=93 Identities=18% Similarity=0.131 Sum_probs=70.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCC----
Q 022298 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF---- 204 (299)
Q Consensus 129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~---- 204 (299)
.|+..+.+.+.+.+++...+ +..+.+|||+|||+|.+++.++.+|. +|+++|+++.++ +.+++|.+..+.
T Consensus 122 ~~~~~~~~v~~~l~~l~~~~----~~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml-~~A~~~~~~~~~~~~~ 195 (315)
T PLN02585 122 IRLGHAQTVEKVLLWLAEDG----SLAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMV-AEAERRAKEALAALPP 195 (315)
T ss_pred cccChHHHHHHHHHHHHhcC----CCCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhccccccc
Confidence 46666666667777776421 13578999999999999999888886 699999999998 999999876522
Q ss_pred CCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEE
Q 022298 205 LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV 237 (299)
Q Consensus 205 ~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~i 237 (299)
...+++...|+..+ .++||+|++
T Consensus 196 ~~~~~f~~~Dl~~l----------~~~fD~Vv~ 218 (315)
T PLN02585 196 EVLPKFEANDLESL----------SGKYDTVTC 218 (315)
T ss_pred ccceEEEEcchhhc----------CCCcCEEEE
Confidence 12366777886542 367999875
No 93
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.74 E-value=3.4e-08 Score=99.91 Aligned_cols=112 Identities=13% Similarity=0.125 Sum_probs=74.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC---------CCEEEEEeCCHHHHHHHHHHHH
Q 022298 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG---------CSEVHFVEMDPWVVSNVLIPNL 199 (299)
Q Consensus 129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG---------a~~V~~VD~n~~Al~~~a~~N~ 199 (299)
.-.|...+.+.+.+++....+........+|||+|||+|++.+.++.+. ...++++|+|+.++ ..++.|+
T Consensus 5 qfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~-~~a~~~l 83 (524)
T TIGR02987 5 TFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLL-KRAKKLL 83 (524)
T ss_pred ccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHH-HHHHHHH
Confidence 3567777888888776432100000135699999999999999887532 14689999999998 9999999
Q ss_pred HHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298 200 EWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV 244 (299)
Q Consensus 200 ~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~ 244 (299)
..++..+ ..+.+.|........ .....+.||+|+.||||...
T Consensus 84 ~~~~~~~-~~i~~~d~l~~~~~~--~~~~~~~fD~IIgNPPy~~~ 125 (524)
T TIGR02987 84 GEFALLE-INVINFNSLSYVLLN--IESYLDLFDIVITNPPYGRL 125 (524)
T ss_pred hhcCCCC-ceeeecccccccccc--cccccCcccEEEeCCCcccc
Confidence 8876222 456666544321100 00112579999999999973
No 94
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.73 E-value=1.1e-07 Score=84.88 Aligned_cols=92 Identities=22% Similarity=0.273 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEE
Q 022298 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210 (299)
Q Consensus 131 Pttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~v 210 (299)
...+.+.+.++.++.... ...+.+|||+|||+|.++..++..|. +|+++|+++.++ +.++++....+..+++.+
T Consensus 43 ~~~~~~~~~~~~~l~~~~----~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i-~~a~~~~~~~~~~~~i~~ 116 (230)
T PRK07580 43 AGHQRMRDTVLSWLPADG----DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMV-EEARERAPEAGLAGNITF 116 (230)
T ss_pred chHHHHHHHHHHHHHhcC----CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHhcCCccCcEE
Confidence 334556666777765421 13567999999999999999888886 599999999998 999999988877566888
Q ss_pred EEcchhhHHHHHhhhcCCCCCeeEEEEc
Q 022298 211 HTVRVETFLERAEQFVGKDGPFDYMSVT 238 (299)
Q Consensus 211 i~~D~~~~l~~~~~~~~~~~~fDlI~iD 238 (299)
..+|+... .+.||+|++.
T Consensus 117 ~~~d~~~~----------~~~fD~v~~~ 134 (230)
T PRK07580 117 EVGDLESL----------LGRFDTVVCL 134 (230)
T ss_pred EEcCchhc----------cCCcCEEEEc
Confidence 88884321 3679999864
No 95
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.73 E-value=7.6e-08 Score=85.78 Aligned_cols=80 Identities=16% Similarity=0.094 Sum_probs=62.8
Q ss_pred CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
.+.+|||+|||+|.+++.++.+. ..+|++||+|+.++ +.+++|++.++.. +++++++|+.+.+... ...+.||
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i-~~a~~~~~~~~~~-~v~~~~~d~~~~l~~~----~~~~~~D 113 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGV-GKALKKIEEEGLT-NLRLLCGDAVEVLLDM----FPDGSLD 113 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHH-HHHHHHHHHcCCC-CEEEEecCHHHHHHHH----cCccccc
Confidence 46799999999999999877653 34799999999998 9999999988874 4899999983333211 1246799
Q ss_pred EEEEcCC
Q 022298 234 YMSVTPP 240 (299)
Q Consensus 234 lI~iDPP 240 (299)
+|+++.|
T Consensus 114 ~V~~~~~ 120 (202)
T PRK00121 114 RIYLNFP 120 (202)
T ss_pred eEEEECC
Confidence 9999654
No 96
>PRK04457 spermidine synthase; Provisional
Probab=98.73 E-value=7.9e-08 Score=89.31 Aligned_cols=78 Identities=18% Similarity=0.155 Sum_probs=64.6
Q ss_pred CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
...+|||+|||+|+++..++.+ +..++++||+|+..+ +.+++++...+..++++++.+|+.+++... .++||
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi-~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~------~~~yD 138 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVI-AVARNHFELPENGERFEVIEADGAEYIAVH------RHSTD 138 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHHcCCCCCCCceEEEECCHHHHHHhC------CCCCC
Confidence 4679999999999999887654 445799999999998 999999765554467899999999987642 36899
Q ss_pred EEEEcC
Q 022298 234 YMSVTP 239 (299)
Q Consensus 234 lI~iDP 239 (299)
+|++|.
T Consensus 139 ~I~~D~ 144 (262)
T PRK04457 139 VILVDG 144 (262)
T ss_pred EEEEeC
Confidence 999995
No 97
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.72 E-value=1.9e-07 Score=83.97 Aligned_cols=103 Identities=18% Similarity=0.245 Sum_probs=77.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 022298 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDV 207 (299)
Q Consensus 130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~ 207 (299)
.+..+.....++..+... ....+||++|+|+|.-++..+.. + ..+++.+|.|++.+ +.+++|++..|+.++
T Consensus 26 ~~~i~~~~g~lL~~l~~~------~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~-~~A~~~~~~ag~~~~ 98 (205)
T PF01596_consen 26 QMSISPETGQLLQMLVRL------TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERA-EIARENFRKAGLDDR 98 (205)
T ss_dssp GGSHHHHHHHHHHHHHHH------HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHH-HHHHHHHHHTTGGGG
T ss_pred CCccCHHHHHHHHHHHHh------cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHH-HHHHHHHHhcCCCCc
Confidence 344455555566665442 35789999999999999876642 1 24799999999998 999999999999889
Q ss_pred EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP 240 (299)
Q Consensus 208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPP 240 (299)
++++.+|+.+++..+..- ...++||+||+|-.
T Consensus 99 I~~~~gda~~~l~~l~~~-~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 99 IEVIEGDALEVLPELAND-GEEGQFDFVFIDAD 130 (205)
T ss_dssp EEEEES-HHHHHHHHHHT-TTTTSEEEEEEEST
T ss_pred EEEEEeccHhhHHHHHhc-cCCCceeEEEEccc
Confidence 999999999998765310 11258999999985
No 98
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.71 E-value=4.5e-07 Score=84.33 Aligned_cols=81 Identities=19% Similarity=0.218 Sum_probs=66.7
Q ss_pred CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhC--C-CCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLERAEQFVGKDG 230 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g--~-~~~~~vi~~D~~~~l~~~~~~~~~~~ 230 (299)
...+|||+|||+|.++.++++++ ..++++||+|+..+ +.+++++...+ + ..+++++.+|+.+++... .+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi-~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------~~ 144 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVI-ELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------EN 144 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHH-HHHHHHhHhhcccccCCceEEEECchHHHHHhC------CC
Confidence 35699999999999999998876 67899999999998 99999886543 1 246788899999988643 46
Q ss_pred CeeEEEEcCCCC
Q 022298 231 PFDYMSVTPPYT 242 (299)
Q Consensus 231 ~fDlI~iDPPY~ 242 (299)
+||+|++|++..
T Consensus 145 ~yDvIi~D~~~~ 156 (270)
T TIGR00417 145 TFDVIIVDSTDP 156 (270)
T ss_pred CccEEEEeCCCC
Confidence 899999999843
No 99
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.71 E-value=7.7e-08 Score=85.36 Aligned_cols=75 Identities=21% Similarity=0.308 Sum_probs=62.2
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl 234 (299)
.+.+|||+|||+|.+++.++.+|. +|+++|+++.++ +.++++++..++.+ ++++..|+.++. ..+.||+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i-~~a~~~~~~~~~~~-v~~~~~d~~~~~--------~~~~fD~ 98 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSI-ANLERIKAAENLDN-LHTAVVDLNNLT--------FDGEYDF 98 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHHcCCCc-ceEEecChhhCC--------cCCCcCE
Confidence 468999999999999999988886 799999999998 99999999888754 778888876541 1357999
Q ss_pred EEEcCC
Q 022298 235 MSVTPP 240 (299)
Q Consensus 235 I~iDPP 240 (299)
|++.-.
T Consensus 99 I~~~~~ 104 (197)
T PRK11207 99 ILSTVV 104 (197)
T ss_pred EEEecc
Confidence 987654
No 100
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.70 E-value=1e-07 Score=84.41 Aligned_cols=76 Identities=14% Similarity=0.205 Sum_probs=61.5
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl 234 (299)
.+.+|||+|||+|.+++.++.+|. +|+++|+++.++ +.++++++..++. +.+...|+..+. ..++||+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l-~~a~~~~~~~~~~--v~~~~~d~~~~~--------~~~~fD~ 97 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASI-ASVLDMKARENLP--LRTDAYDINAAA--------LNEDYDF 97 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHH-HHHHHHHHHhCCC--ceeEeccchhcc--------ccCCCCE
Confidence 467999999999999999988886 699999999998 9999999887764 556667764321 1357999
Q ss_pred EEEcCCCC
Q 022298 235 MSVTPPYT 242 (299)
Q Consensus 235 I~iDPPY~ 242 (299)
|++..++.
T Consensus 98 I~~~~~~~ 105 (195)
T TIGR00477 98 IFSTVVFM 105 (195)
T ss_pred EEEecccc
Confidence 99887764
No 101
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.3e-07 Score=91.17 Aligned_cols=80 Identities=24% Similarity=0.390 Sum_probs=67.2
Q ss_pred CCEEEEECCccchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298 156 PGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (299)
Q Consensus 156 ~~~VLDLfaGSGalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl 234 (299)
..+|+|.+||||.-||-.+. -|..+|++-|+||+|+ +++++|++.|...+ ..+++.|+..++... ...||+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Av-elik~Nv~~N~~~~-~~v~n~DAN~lm~~~------~~~fd~ 124 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAV-ELIKENVRLNSGED-AEVINKDANALLHEL------HRAFDV 124 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHH-HHHHHHHHhcCccc-ceeecchHHHHHHhc------CCCccE
Confidence 67999999999999999765 4666899999999998 99999999995444 556779999988642 478999
Q ss_pred EEEcCCCCCC
Q 022298 235 MSVTPPYTAV 244 (299)
Q Consensus 235 I~iDPPY~~~ 244 (299)
|-+|| |+..
T Consensus 125 IDiDP-FGSP 133 (380)
T COG1867 125 IDIDP-FGSP 133 (380)
T ss_pred EecCC-CCCC
Confidence 99998 8763
No 102
>PRK03612 spermidine synthase; Provisional
Probab=98.70 E-value=5e-08 Score=98.90 Aligned_cols=82 Identities=21% Similarity=0.241 Sum_probs=66.8
Q ss_pred CCCEEEEECCccchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHH--h---CCC-CcEEEEEcchhhHHHHHhhhcC
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEW--T---GFL-DVSSIHTVRVETFLERAEQFVG 227 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa-~~V~~VD~n~~Al~~~a~~N~~~--~---g~~-~~~~vi~~D~~~~l~~~~~~~~ 227 (299)
+..+|||+|||+|.+..|+++++. .+|++||+|++.+ +.+++|... . .++ ++++++.+|+.+++...
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi-~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~----- 370 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMT-ELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL----- 370 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHH-HHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC-----
Confidence 467999999999999999998764 7999999999998 999996421 1 122 46899999999987543
Q ss_pred CCCCeeEEEEcCCCCC
Q 022298 228 KDGPFDYMSVTPPYTA 243 (299)
Q Consensus 228 ~~~~fDlI~iDPPY~~ 243 (299)
.++||+|++|+|...
T Consensus 371 -~~~fDvIi~D~~~~~ 385 (521)
T PRK03612 371 -AEKFDVIIVDLPDPS 385 (521)
T ss_pred -CCCCCEEEEeCCCCC
Confidence 368999999998653
No 103
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.70 E-value=7.2e-08 Score=88.23 Aligned_cols=87 Identities=24% Similarity=0.255 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 022298 135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (299)
Q Consensus 135 ~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~ 212 (299)
++|+.+...+.. .++.+|||+|||||.++++++.+ | ..+|+++|+++.++ +.+++.++..+.. ++++++
T Consensus 34 ~wr~~~~~~~~~-------~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML-~~a~~k~~~~~~~-~i~~v~ 104 (233)
T PF01209_consen 34 RWRRKLIKLLGL-------RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGML-EVARKKLKREGLQ-NIEFVQ 104 (233)
T ss_dssp ---SHHHHHHT---------S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHH-HHHHHHHHHTT---SEEEEE
T ss_pred HHHHHHHhccCC-------CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHH-HHHHHHHHhhCCC-CeeEEE
Confidence 355555555433 35789999999999999987764 3 24799999999998 9999999988775 599999
Q ss_pred cchhhHHHHHhhhcCCCCCeeEEEE
Q 022298 213 VRVETFLERAEQFVGKDGPFDYMSV 237 (299)
Q Consensus 213 ~D~~~~l~~~~~~~~~~~~fDlI~i 237 (299)
+|+.+.- ..++.||.|++
T Consensus 105 ~da~~lp-------~~d~sfD~v~~ 122 (233)
T PF01209_consen 105 GDAEDLP-------FPDNSFDAVTC 122 (233)
T ss_dssp -BTTB---------S-TT-EEEEEE
T ss_pred cCHHHhc-------CCCCceeEEEH
Confidence 9998752 23578999996
No 104
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.69 E-value=1.1e-07 Score=84.75 Aligned_cols=78 Identities=19% Similarity=0.062 Sum_probs=63.4
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl 234 (299)
.+.+|||+|||+|.++..++..+ .+|+++|+++.++ +.+++|++.+++.+ ++++.+|+.+.+. ..++||+
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~-~~a~~~~~~~~~~~-v~~~~~d~~~~~~-------~~~~fD~ 147 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQ-WEAKRRLKQLGLHN-VSVRHGDGWKGWP-------AYAPFDR 147 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHH-HHHHHHHHHCCCCc-eEEEECCcccCCC-------cCCCcCE
Confidence 57899999999999987655554 4799999999998 99999999998865 8899999754321 1368999
Q ss_pred EEEcCCCC
Q 022298 235 MSVTPPYT 242 (299)
Q Consensus 235 I~iDPPY~ 242 (299)
|+++.+..
T Consensus 148 I~~~~~~~ 155 (212)
T PRK00312 148 ILVTAAAP 155 (212)
T ss_pred EEEccCch
Confidence 99998654
No 105
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.64 E-value=1.4e-07 Score=74.19 Aligned_cols=69 Identities=26% Similarity=0.286 Sum_probs=54.6
Q ss_pred EEEECCccchHHHHHHHc---CC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298 159 WLDLYSGTGSVGIEAISR---GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (299)
Q Consensus 159 VLDLfaGSGalgIEAlSr---Ga-~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl 234 (299)
|||+|||+|.....++.. |. .+++++|+|+.++ +.++++....+. .++++++|+.++.. . .++||+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l-~~~~~~~~~~~~--~~~~~~~D~~~l~~-~------~~~~D~ 70 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEML-ELAKKRFSEDGP--KVRFVQADARDLPF-S------DGKFDL 70 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHH-HHHHHHSHHTTT--TSEEEESCTTCHHH-H------SSSEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHH-HHHHHhchhcCC--ceEEEECCHhHCcc-c------CCCeeE
Confidence 799999999999988766 32 6899999999998 999999988666 47899999987532 2 469999
Q ss_pred EEE
Q 022298 235 MSV 237 (299)
Q Consensus 235 I~i 237 (299)
|++
T Consensus 71 v~~ 73 (101)
T PF13649_consen 71 VVC 73 (101)
T ss_dssp EEE
T ss_pred EEE
Confidence 998
No 106
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.64 E-value=1.4e-07 Score=90.22 Aligned_cols=75 Identities=13% Similarity=0.118 Sum_probs=60.8
Q ss_pred CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
..+.+|||+|||+|.++..++..|+ +|++||.+++++ +.++++.+..+...+++++++|+.++.. ..++||
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i-~~Ar~~~~~~~~~~~i~~~~~dae~l~~-------~~~~FD 200 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNV-KIARLHADMDPVTSTIEYLCTTAEKLAD-------EGRKFD 200 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHhcCcccceeEEecCHHHhhh-------ccCCCC
Confidence 3577999999999999987777776 699999999998 9999987766554568899999876531 246899
Q ss_pred EEEE
Q 022298 234 YMSV 237 (299)
Q Consensus 234 lI~i 237 (299)
+|++
T Consensus 201 ~Vi~ 204 (322)
T PLN02396 201 AVLS 204 (322)
T ss_pred EEEE
Confidence 9985
No 107
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.63 E-value=2.1e-07 Score=87.13 Aligned_cols=74 Identities=19% Similarity=0.224 Sum_probs=61.1
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl 234 (299)
.+++|||+|||+|..++.++.+|. +|+++|.|+.++ +.+++|++..++ .+++...|+.... ..++||+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai-~~~~~~~~~~~l--~v~~~~~D~~~~~--------~~~~fD~ 187 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSL-ENLQEIAEKENL--NIRTGLYDINSAS--------IQEEYDF 187 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHHcCC--ceEEEEechhccc--------ccCCccE
Confidence 456999999999999999888886 699999999998 999999998887 3777778876531 1368999
Q ss_pred EEEcCC
Q 022298 235 MSVTPP 240 (299)
Q Consensus 235 I~iDPP 240 (299)
|++.--
T Consensus 188 I~~~~v 193 (287)
T PRK12335 188 ILSTVV 193 (287)
T ss_pred EEEcch
Confidence 987653
No 108
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.62 E-value=1.5e-07 Score=86.64 Aligned_cols=88 Identities=17% Similarity=0.185 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022298 135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR 214 (299)
Q Consensus 135 ~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D 214 (299)
.+.+.+.+.+.. .++.+|||+|||+|.++..++.++. +|+++|+|+.++ +.+++|+.. ..+++++++|
T Consensus 16 ~i~~~i~~~~~~-------~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~-~~l~~~~~~---~~~v~v~~~D 83 (253)
T TIGR00755 16 SVIQKIVEAANV-------LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLA-EILRKLLSL---YERLEVIEGD 83 (253)
T ss_pred HHHHHHHHhcCC-------CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHH-HHHHHHhCc---CCcEEEEECc
Confidence 355566565542 3578999999999999999888875 599999999998 899888743 2458899999
Q ss_pred hhhHHHHHhhhcCCCCCee---EEEEcCCCCC
Q 022298 215 VETFLERAEQFVGKDGPFD---YMSVTPPYTA 243 (299)
Q Consensus 215 ~~~~l~~~~~~~~~~~~fD---lI~iDPPY~~ 243 (299)
+.++.. ..|| +|+.|+||..
T Consensus 84 ~~~~~~---------~~~d~~~~vvsNlPy~i 106 (253)
T TIGR00755 84 ALKVDL---------PDFPKQLKVVSNLPYNI 106 (253)
T ss_pred hhcCCh---------hHcCCcceEEEcCChhh
Confidence 876431 2355 9999999974
No 109
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.61 E-value=4.6e-07 Score=83.05 Aligned_cols=77 Identities=5% Similarity=-0.010 Sum_probs=62.3
Q ss_pred CCCEEEEECCccchHHHHHHHc---CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR---GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr---Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~ 231 (299)
.+.+|||+|||+|..++.++.. ...+++++|.++.++ +.+++|++.++..++++++++|+.+.. ...
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml-~~A~~~~~~~~~~~~v~~~~~d~~~~~---------~~~ 125 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMI-ERCRRHIDAYKAPTPVDVIEGDIRDIA---------IEN 125 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEEeCChhhCC---------CCC
Confidence 5789999999999998876552 234799999999998 999999998887767899999987642 245
Q ss_pred eeEEEEcCCC
Q 022298 232 FDYMSVTPPY 241 (299)
Q Consensus 232 fDlI~iDPPY 241 (299)
+|+|++....
T Consensus 126 ~D~vv~~~~l 135 (247)
T PRK15451 126 ASMVVLNFTL 135 (247)
T ss_pred CCEEehhhHH
Confidence 8998876543
No 110
>PLN02244 tocopherol O-methyltransferase
Probab=98.60 E-value=2.3e-07 Score=89.18 Aligned_cols=75 Identities=21% Similarity=0.225 Sum_probs=62.9
Q ss_pred CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
.+.+|||+|||+|.+++.++.+ |+ +|++||+++.++ +.++++++..+..++++++.+|+.+.. ...+.||
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~-~v~gvD~s~~~i-~~a~~~~~~~g~~~~v~~~~~D~~~~~-------~~~~~FD 188 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGA-NVKGITLSPVQA-ARANALAAAQGLSDKVSFQVADALNQP-------FEDGQFD 188 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCC-EEEEEECCHHHH-HHHHHHHHhcCCCCceEEEEcCcccCC-------CCCCCcc
Confidence 5689999999999999988776 55 799999999998 999999998888777899999987531 1246899
Q ss_pred EEEEc
Q 022298 234 YMSVT 238 (299)
Q Consensus 234 lI~iD 238 (299)
+|++.
T Consensus 189 ~V~s~ 193 (340)
T PLN02244 189 LVWSM 193 (340)
T ss_pred EEEEC
Confidence 99974
No 111
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=4.4e-07 Score=80.04 Aligned_cols=77 Identities=16% Similarity=0.220 Sum_probs=64.6
Q ss_pred CCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 156 PGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 156 ~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
..-++++|||||.++-...+. +.....+.|+||+|+ +..++.++.|+.. +.+++.|+.+.+. .++.|
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~~--~~~V~tdl~~~l~--------~~~VD 112 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRVH--IDVVRTDLLSGLR--------NESVD 112 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCCc--cceeehhHHhhhc--------cCCcc
Confidence 578999999999998766664 344678999999997 9999999988763 6789999888764 37899
Q ss_pred EEEEcCCCCC
Q 022298 234 YMSVTPPYTA 243 (299)
Q Consensus 234 lI~iDPPY~~ 243 (299)
+++.||||.-
T Consensus 113 vLvfNPPYVp 122 (209)
T KOG3191|consen 113 VLVFNPPYVP 122 (209)
T ss_pred EEEECCCcCc
Confidence 9999999985
No 112
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.58 E-value=1.3e-07 Score=86.63 Aligned_cols=73 Identities=21% Similarity=0.193 Sum_probs=61.1
Q ss_pred CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
+.+.+|||+|||-|.++..++..|+ .|+++|++++++ +.++.-+...++. +...+..+++... .+++||
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I-~~Ak~ha~e~gv~--i~y~~~~~edl~~-------~~~~FD 126 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPI-EVAKLHALESGVN--IDYRQATVEDLAS-------AGGQFD 126 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHH-HHHHHhhhhcccc--ccchhhhHHHHHh-------cCCCcc
Confidence 4689999999999999999999996 699999999998 9999998888874 4566677776542 247999
Q ss_pred EEEE
Q 022298 234 YMSV 237 (299)
Q Consensus 234 lI~i 237 (299)
+|++
T Consensus 127 vV~c 130 (243)
T COG2227 127 VVTC 130 (243)
T ss_pred EEEE
Confidence 9986
No 113
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.58 E-value=2.4e-07 Score=90.43 Aligned_cols=106 Identities=24% Similarity=0.393 Sum_probs=72.6
Q ss_pred CCCCCCCHHHHHH---HH---HHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHH
Q 022298 126 GMDVRPMMEVVKG---AA---FDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIP 197 (299)
Q Consensus 126 ~~~~RPttd~Vre---al---fn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~ 197 (299)
..+++|.+..=|. .+ ++...... ....++||..||||.-||-.+.. |+.+|++.|+|++|+ +++++
T Consensus 19 ~vFYNP~~~~nRDlsvl~~~~~~~~~~~~-----~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~-~~i~~ 92 (377)
T PF02005_consen 19 PVFYNPVMEFNRDLSVLAIRYLAVLKEKR-----KGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAV-ELIKR 92 (377)
T ss_dssp SSS--GGGHHHHHHHHHH---HHHHHHCH------S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHH-HHHHH
T ss_pred CcccCcchhcccceeehhHHHHHHhhhhh-----cCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHH-HHHHH
Confidence 3467998875332 22 34433320 13458999999999999997764 788999999999998 99999
Q ss_pred HHHHhCCCC-cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298 198 NLEWTGFLD-VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV 244 (299)
Q Consensus 198 N~~~~g~~~-~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~ 244 (299)
|++.|++.+ ++++.+.|+..++.. ....||+|-+|| |+..
T Consensus 93 N~~~N~~~~~~~~v~~~DAn~ll~~------~~~~fD~IDlDP-fGSp 133 (377)
T PF02005_consen 93 NLELNGLEDERIEVSNMDANVLLYS------RQERFDVIDLDP-FGSP 133 (377)
T ss_dssp HHHHCT-SGCCEEEEES-HHHHHCH------STT-EEEEEE---SS--
T ss_pred hHhhccccCceEEEehhhHHHHhhh------ccccCCEEEeCC-CCCc
Confidence 999999987 789999999988732 247899999998 9864
No 114
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.56 E-value=4.2e-07 Score=68.20 Aligned_cols=78 Identities=23% Similarity=0.259 Sum_probs=60.8
Q ss_pred EEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEE
Q 022298 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV 237 (299)
Q Consensus 158 ~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~i 237 (299)
+++|+|||+|.++..++..+..+++++|.++.++ ..++++.+..+. ...+++..|+.+.... ...+||+|++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~d~i~~ 72 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVAL-ELARKAAAALLA-DNVEVLKGDAEELPPE------ADESFDVIIS 72 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHhcccc-cceEEEEcChhhhccc------cCCceEEEEE
Confidence 4899999999999888775667899999999997 788765444433 3578899998876431 1367999999
Q ss_pred cCCCCC
Q 022298 238 TPPYTA 243 (299)
Q Consensus 238 DPPY~~ 243 (299)
++|+..
T Consensus 73 ~~~~~~ 78 (107)
T cd02440 73 DPPLHH 78 (107)
T ss_pred ccceee
Confidence 999764
No 115
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.55 E-value=2.2e-07 Score=88.68 Aligned_cols=78 Identities=17% Similarity=0.154 Sum_probs=69.3
Q ss_pred CCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298 153 SLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (299)
Q Consensus 153 ~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f 232 (299)
++.+..|||+|||||.++.-|+..||++|++||-+.-| +.+++-++.|.+.+++.++.|.+++.. ..++.
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MA--qyA~~Lv~~N~~~~rItVI~GKiEdie--------LPEk~ 244 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMA--QYARKLVASNNLADRITVIPGKIEDIE--------LPEKV 244 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHH--HHHHHHHhcCCccceEEEccCcccccc--------Cchhc
Confidence 47899999999999999999999999999999998865 789999999999999999999988752 24789
Q ss_pred eEEEEcCC
Q 022298 233 DYMSVTPP 240 (299)
Q Consensus 233 DlI~iDPP 240 (299)
|+|+..|-
T Consensus 245 DviISEPM 252 (517)
T KOG1500|consen 245 DVIISEPM 252 (517)
T ss_pred cEEEeccc
Confidence 99999984
No 116
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.55 E-value=5.1e-07 Score=86.48 Aligned_cols=75 Identities=19% Similarity=0.053 Sum_probs=61.1
Q ss_pred CCCEEEEECCccchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa--~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f 232 (299)
++.+|||+|||+|.+++.++.... .+|+++|.++.++ +.+++|++.++.. ++.++++|+.+.... ...|
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l-~~Ar~~l~~~g~~-nV~~i~gD~~~~~~~-------~~~f 150 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKIC-EIAKRNVRRLGIE-NVIFVCGDGYYGVPE-------FAPY 150 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-cEEEEeCChhhcccc-------cCCc
Confidence 578999999999999988766432 3699999999998 9999999999985 488899997654321 2579
Q ss_pred eEEEEc
Q 022298 233 DYMSVT 238 (299)
Q Consensus 233 DlI~iD 238 (299)
|+|+++
T Consensus 151 D~Ii~~ 156 (322)
T PRK13943 151 DVIFVT 156 (322)
T ss_pred cEEEEC
Confidence 999995
No 117
>PLN02366 spermidine synthase
Probab=98.55 E-value=2.2e-06 Score=81.61 Aligned_cols=81 Identities=23% Similarity=0.304 Sum_probs=66.2
Q ss_pred CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHh--CC-CCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWT--GF-LDVSSIHTVRVETFLERAEQFVGKDG 230 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~--g~-~~~~~vi~~D~~~~l~~~~~~~~~~~ 230 (299)
...+||++|||.|.+..+++.. +..+|+.||+|+..+ +.+++.+... ++ .++++++.+|+..+++.. ..+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi-~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~-----~~~ 164 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVI-DVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA-----PEG 164 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHH-HHHHHhhhhhccccCCCceEEEEChHHHHHhhc-----cCC
Confidence 4689999999999999998876 467899999999998 9999987653 23 247999999999988642 136
Q ss_pred CeeEEEEcCCC
Q 022298 231 PFDYMSVTPPY 241 (299)
Q Consensus 231 ~fDlI~iDPPY 241 (299)
+||+|++|.+-
T Consensus 165 ~yDvIi~D~~d 175 (308)
T PLN02366 165 TYDAIIVDSSD 175 (308)
T ss_pred CCCEEEEcCCC
Confidence 89999999643
No 118
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.54 E-value=2.5e-07 Score=88.56 Aligned_cols=76 Identities=21% Similarity=0.218 Sum_probs=66.6
Q ss_pred CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
+.++.|||+|||||.+++.|+..||.+|++||-+.-+ +.+++.++.|++++.++++++.+++.. + +-++.|
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia--~~a~~iv~~N~~~~ii~vi~gkvEdi~-----L--P~eKVD 129 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA--DFARKIVKDNGLEDVITVIKGKVEDIE-----L--PVEKVD 129 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH--HHHHHHHHhcCccceEEEeecceEEEe-----c--Ccccee
Confidence 5799999999999999999999999999999998865 799999999999999999999988762 1 136888
Q ss_pred EEEEc
Q 022298 234 YMSVT 238 (299)
Q Consensus 234 lI~iD 238 (299)
+|+..
T Consensus 130 iIvSE 134 (346)
T KOG1499|consen 130 IIVSE 134 (346)
T ss_pred EEeeh
Confidence 88853
No 119
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.54 E-value=5.3e-07 Score=89.92 Aligned_cols=75 Identities=20% Similarity=0.196 Sum_probs=58.6
Q ss_pred CCEEEEECCccchHHHHHHHcC-----CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298 156 PGRWLDLYSGTGSVGIEAISRG-----CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230 (299)
Q Consensus 156 ~~~VLDLfaGSGalgIEAlSrG-----a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~ 230 (299)
+..|+|+|||+|.++..|+..| +.+|++||.|+.|+ ..+++-++.++..++++++++|++++-. ..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~-~~l~~~v~~n~w~~~V~vi~~d~r~v~l--------pe 257 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAV-VTLQKRVNANGWGDKVTVIHGDMREVEL--------PE 257 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHH-HHHHHHHHHTTTTTTEEEEES-TTTSCH--------SS
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHH-HHHHHHHHhcCCCCeEEEEeCcccCCCC--------CC
Confidence 5789999999999998877655 67999999999997 6666666889998899999999998742 36
Q ss_pred CeeEEEEcC
Q 022298 231 PFDYMSVTP 239 (299)
Q Consensus 231 ~fDlI~iDP 239 (299)
++|+|+.-.
T Consensus 258 kvDIIVSEl 266 (448)
T PF05185_consen 258 KVDIIVSEL 266 (448)
T ss_dssp -EEEEEE--
T ss_pred ceeEEEEec
Confidence 899999766
No 120
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.53 E-value=8.4e-07 Score=83.09 Aligned_cols=71 Identities=23% Similarity=0.306 Sum_probs=55.8
Q ss_pred CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
+|.+|||+|||-|++++.++.+ |+ +|++|.+|+.-. +.+++.++..|+.+++++...|..++ ..+||
T Consensus 62 ~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~-~~a~~~~~~~gl~~~v~v~~~D~~~~----------~~~fD 129 (273)
T PF02353_consen 62 PGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQA-EYARERIREAGLEDRVEVRLQDYRDL----------PGKFD 129 (273)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHH-HHHHHHHHCSTSSSTEEEEES-GGG-------------S-S
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHH-HHHHHHHHhcCCCCceEEEEeecccc----------CCCCC
Confidence 6889999999999999999988 87 699999999998 99999999999999999999997764 24788
Q ss_pred EEEE
Q 022298 234 YMSV 237 (299)
Q Consensus 234 lI~i 237 (299)
.|+.
T Consensus 130 ~IvS 133 (273)
T PF02353_consen 130 RIVS 133 (273)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8774
No 121
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.53 E-value=4.4e-07 Score=90.97 Aligned_cols=81 Identities=20% Similarity=0.242 Sum_probs=67.2
Q ss_pred CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f 232 (299)
++.+|||+|||.|+-+..++++ +...++++|+++.-+ +.+++|++.+|+.+ +.+.+.|+..+.... ...|
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~-~~L~~nl~r~G~~n-v~v~~~D~~~~~~~~------~~~f 184 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRV-KVLHANISRCGVSN-VALTHFDGRVFGAAL------PETF 184 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCe-EEEEeCchhhhhhhc------hhhc
Confidence 6789999999999998887664 234799999999998 99999999999966 788889987654322 3579
Q ss_pred eEEEEcCCCCC
Q 022298 233 DYMSVTPPYTA 243 (299)
Q Consensus 233 DlI~iDPPY~~ 243 (299)
|.|++|+|...
T Consensus 185 D~ILvDaPCSG 195 (470)
T PRK11933 185 DAILLDAPCSG 195 (470)
T ss_pred CeEEEcCCCCC
Confidence 99999999874
No 122
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.50 E-value=1.7e-07 Score=83.22 Aligned_cols=77 Identities=19% Similarity=0.236 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 022298 133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (299)
Q Consensus 133 td~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~ 212 (299)
.|--|-++|..+-.. .....+.|||+|||.+++-|+.. |.+|++||.||... +++.+|++..|..| ++++.
T Consensus 16 ~D~eRlavF~~ai~~------va~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a-~~a~eN~~v~g~~n-~evv~ 86 (252)
T COG4076 16 RDVERLAVFTSAIAE------VAEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRA-RLAEENLHVPGDVN-WEVVV 86 (252)
T ss_pred hhHHHHHHHHHHHHH------HhhhceeeccCCcchHHHHHHhh-hceEEEEecCcHHH-HHhhhcCCCCCCcc-eEEEe
Confidence 344455666554332 34578999999999999977665 88999999999997 99999998888754 89999
Q ss_pred cchhhH
Q 022298 213 VRVETF 218 (299)
Q Consensus 213 ~D~~~~ 218 (299)
+|+.++
T Consensus 87 gDA~~y 92 (252)
T COG4076 87 GDARDY 92 (252)
T ss_pred cccccc
Confidence 998865
No 123
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.48 E-value=1.4e-06 Score=80.70 Aligned_cols=76 Identities=17% Similarity=0.143 Sum_probs=57.3
Q ss_pred CCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHH--hCCCCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEW--TGFLDVSSIHTVRVETFLERAEQFVGKDG 230 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~--~g~~~~~~vi~~D~~~~l~~~~~~~~~~~ 230 (299)
++.+|||+|||||.+++.++.+ | ..+|+++|+++.++ +.++++... .+..++++++++|+.++- ..++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml-~~A~~r~~~~~~~~~~~i~~~~~d~~~lp-------~~~~ 144 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQL-AVAASRQELKAKSCYKNIEWIEGDATDLP-------FDDC 144 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhhhhccCCCeEEEEcccccCC-------CCCC
Confidence 5789999999999999877664 4 24799999999998 899876542 222245889999987641 1246
Q ss_pred CeeEEEEc
Q 022298 231 PFDYMSVT 238 (299)
Q Consensus 231 ~fDlI~iD 238 (299)
.||+|++.
T Consensus 145 sfD~V~~~ 152 (261)
T PLN02233 145 YFDAITMG 152 (261)
T ss_pred CEeEEEEe
Confidence 89999874
No 124
>PRK01581 speE spermidine synthase; Validated
Probab=98.48 E-value=6.9e-07 Score=86.73 Aligned_cols=81 Identities=21% Similarity=0.278 Sum_probs=64.3
Q ss_pred CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHH-----HHhCC-CCcEEEEEcchhhHHHHHhhhcC
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNL-----EWTGF-LDVSSIHTVRVETFLERAEQFVG 227 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~-----~~~g~-~~~~~vi~~D~~~~l~~~~~~~~ 227 (299)
...+||++|||+|....+++..+ ..+|++||+|++.+ +.++++- ....+ ..+++++.+|+.+++...
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVI-elAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~----- 223 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMI-NMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP----- 223 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHH-HHHHhccccchhccccCCCCceEEEECcHHHHHHhc-----
Confidence 46799999999999998888764 57899999999998 9998631 11122 357899999999998643
Q ss_pred CCCCeeEEEEcCCCC
Q 022298 228 KDGPFDYMSVTPPYT 242 (299)
Q Consensus 228 ~~~~fDlI~iDPPY~ 242 (299)
.++||+||+|.|-.
T Consensus 224 -~~~YDVIIvDl~DP 237 (374)
T PRK01581 224 -SSLYDVIIIDFPDP 237 (374)
T ss_pred -CCCccEEEEcCCCc
Confidence 46899999998643
No 125
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.47 E-value=2e-06 Score=77.98 Aligned_cols=74 Identities=8% Similarity=-0.080 Sum_probs=59.5
Q ss_pred CCCEEEEECCccchHHHHHHHc---CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR---GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr---Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~ 231 (299)
.+.+|||+|||+|...+.++.+ ...+++++|+++.++ +.++++++..+...+++++++|+.++. ...
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml-~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~ 122 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMV-ERCRQHIAAYHSEIPVEILCNDIRHVE---------IKN 122 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEEECChhhCC---------CCC
Confidence 5679999999999999888764 234799999999998 999999987766556889999987642 245
Q ss_pred eeEEEEc
Q 022298 232 FDYMSVT 238 (299)
Q Consensus 232 fDlI~iD 238 (299)
+|+|++.
T Consensus 123 ~d~v~~~ 129 (239)
T TIGR00740 123 ASMVILN 129 (239)
T ss_pred CCEEeee
Confidence 7887764
No 126
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=98.47 E-value=2e-07 Score=89.17 Aligned_cols=82 Identities=22% Similarity=0.202 Sum_probs=64.8
Q ss_pred CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHH-------HHHHHHHHhCCCCc-EEEEEcchhhHHHHHhhh
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSN-------VLIPNLEWTGFLDV-SSIHTVRVETFLERAEQF 225 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~-------~a~~N~~~~g~~~~-~~vi~~D~~~~l~~~~~~ 225 (299)
.+|..|.|.|.|||++-+.|+.-|| .|++-|||-..+ . .++.|.+..|...+ ..++.+|....--
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~v-ragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~----- 279 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTV-RAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPL----- 279 (421)
T ss_pred CCCCEEecCccccCceeeehhhhcc-eeeccccchhee-ecccCCCcchhHhHHHhCCcchhhheeeecccCcch-----
Confidence 4689999999999999999888898 699999998876 5 57889998886543 3566777654321
Q ss_pred cCCCCCeeEEEEcCCCCC
Q 022298 226 VGKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 226 ~~~~~~fDlI~iDPPY~~ 243 (299)
..+..||.|++||||+.
T Consensus 280 -rsn~~fDaIvcDPPYGV 296 (421)
T KOG2671|consen 280 -RSNLKFDAIVCDPPYGV 296 (421)
T ss_pred -hhcceeeEEEeCCCcch
Confidence 12468999999999984
No 127
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.47 E-value=1.1e-06 Score=83.93 Aligned_cols=75 Identities=15% Similarity=0.100 Sum_probs=56.8
Q ss_pred CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
+.+.+|||+|||+|.+++.++..|+..|+++|.++..+ ...+...+..+...+++++.+|+.+.- . .+.||
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l-~q~~a~~~~~~~~~~i~~~~~d~e~lp-------~-~~~FD 191 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFL-CQFEAVRKLLGNDQRAHLLPLGIEQLP-------A-LKAFD 191 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHHHHhcCCCCCeEEEeCCHHHCC-------C-cCCcC
Confidence 56889999999999999999999988899999999875 433333233333345888889887642 1 46899
Q ss_pred EEEE
Q 022298 234 YMSV 237 (299)
Q Consensus 234 lI~i 237 (299)
+|++
T Consensus 192 ~V~s 195 (322)
T PRK15068 192 TVFS 195 (322)
T ss_pred EEEE
Confidence 9997
No 128
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.46 E-value=1.9e-06 Score=78.28 Aligned_cols=79 Identities=20% Similarity=0.190 Sum_probs=66.5
Q ss_pred CCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE-cchhhHHHHHhhhcCCCCC
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT-VRVETFLERAEQFVGKDGP 231 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~-~D~~~~l~~~~~~~~~~~~ 231 (299)
..+++|++|.+.|.-++..+.. . ..+++.||.|++.+ +.+++|++..|+.++++++. +|+.+.+... ..+.
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~-~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~-----~~~~ 132 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERA-EIARENLAEAGVDDRIELLLGGDALDVLSRL-----LDGS 132 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHH-HHHHHHHHHcCCcceEEEEecCcHHHHHHhc-----cCCC
Confidence 5789999999999999876642 2 34799999999998 99999999999999888888 5988877641 2589
Q ss_pred eeEEEEcC
Q 022298 232 FDYMSVTP 239 (299)
Q Consensus 232 fDlI~iDP 239 (299)
||+||+|-
T Consensus 133 fDliFIDa 140 (219)
T COG4122 133 FDLVFIDA 140 (219)
T ss_pred ccEEEEeC
Confidence 99999985
No 129
>PLN02823 spermine synthase
Probab=98.46 E-value=4.3e-06 Score=80.60 Aligned_cols=78 Identities=21% Similarity=0.216 Sum_probs=65.6
Q ss_pred CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhC--C-CCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLERAEQFVGKDG 230 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g--~-~~~~~vi~~D~~~~l~~~~~~~~~~~ 230 (299)
...+||-+|+|.|..+.|+++. +..+|++||+|++.+ +++++++..++ + ..+++++.+|+..++... .+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv-~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~------~~ 175 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVV-DFCRKHLTVNREAFCDKRLELIINDARAELEKR------DE 175 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHH-HHHHHhcccccccccCCceEEEEChhHHHHhhC------CC
Confidence 4579999999999999999984 577899999999998 99999876432 1 357899999999998542 46
Q ss_pred CeeEEEEcC
Q 022298 231 PFDYMSVTP 239 (299)
Q Consensus 231 ~fDlI~iDP 239 (299)
+||+||+|.
T Consensus 176 ~yDvIi~D~ 184 (336)
T PLN02823 176 KFDVIIGDL 184 (336)
T ss_pred CccEEEecC
Confidence 899999995
No 130
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=6.9e-07 Score=82.42 Aligned_cols=80 Identities=18% Similarity=0.124 Sum_probs=67.9
Q ss_pred CCCCEEEEECCccchHHHHHHH-cC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298 154 LRPGRWLDLYSGTGSVGIEAIS-RG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlS-rG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~ 231 (299)
.++.+|||.|.|||+++..++. .| ..+|+.+|+..+-+ +.+++|++.+++.|++++..+|+.+... .+.
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~-k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~--------~~~ 163 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFA-KTARENLSEFGLGDRVTLKLGDVREGID--------EED 163 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHH-HHHHHHHHHhccccceEEEecccccccc--------ccc
Confidence 4689999999999999986552 33 36899999999998 9999999999998888888899887652 358
Q ss_pred eeEEEEcCCCC
Q 022298 232 FDYMSVTPPYT 242 (299)
Q Consensus 232 fDlI~iDPPY~ 242 (299)
||.||+|-|=-
T Consensus 164 vDav~LDmp~P 174 (256)
T COG2519 164 VDAVFLDLPDP 174 (256)
T ss_pred cCEEEEcCCCh
Confidence 99999999844
No 131
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.45 E-value=1.2e-06 Score=80.87 Aligned_cols=77 Identities=23% Similarity=0.171 Sum_probs=61.8
Q ss_pred CCCEEEEECCccchHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr-Ga-~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f 232 (299)
.+.+|||+|||+|..++.++.. |. .+|+++|+++.++ +.+++|.+.+++. +++++.+|+.+.. ...+.|
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l-~~A~~~~~~~g~~-~v~~~~~d~~~l~-------~~~~~f 147 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEML-AKARANARKAGYT-NVEFRLGEIEALP-------VADNSV 147 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHH-HHHHHHHHHcCCC-CEEEEEcchhhCC-------CCCCce
Confidence 5789999999999988876653 54 3799999999998 9999999998875 5788889976531 124589
Q ss_pred eEEEEcCC
Q 022298 233 DYMSVTPP 240 (299)
Q Consensus 233 DlI~iDPP 240 (299)
|+|+.+--
T Consensus 148 D~Vi~~~v 155 (272)
T PRK11873 148 DVIISNCV 155 (272)
T ss_pred eEEEEcCc
Confidence 99998753
No 132
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.45 E-value=3e-06 Score=78.40 Aligned_cols=85 Identities=11% Similarity=0.086 Sum_probs=68.1
Q ss_pred CCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f 232 (299)
...++|++|+++|.-++..++. + -.+++.+|.|++.+ +.+++|++..|+.++++++.+|+.+.+..+.......++|
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~-~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENY-ELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHH-HHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 5689999999999888865532 1 24799999999997 9999999999999999999999999887642100012589
Q ss_pred eEEEEcCC
Q 022298 233 DYMSVTPP 240 (299)
Q Consensus 233 DlI~iDPP 240 (299)
|+||+|--
T Consensus 158 D~iFiDad 165 (247)
T PLN02589 158 DFIFVDAD 165 (247)
T ss_pred cEEEecCC
Confidence 99999964
No 133
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.44 E-value=7.4e-07 Score=77.76 Aligned_cols=85 Identities=26% Similarity=0.377 Sum_probs=53.7
Q ss_pred CCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhC--CCCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG--FLDVSSIHTVRVETFLERAEQFVGKDG 230 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g--~~~~~~vi~~D~~~~l~~~~~~~~~~~ 230 (299)
..+.+||+||||+|..|+.++.. |+.+|++-|.++ ++ +.++.|++.|+ ..+++.+...|..+..... .. ...
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l-~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~--~~-~~~ 118 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VL-ELLRRNIELNGSLLDGRVSVRPLDWGDELDSD--LL-EPH 118 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HH-HHHHHHHHTT--------EEEE--TTS-HHHH--HH-S-S
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hh-HHHHHHHHhccccccccccCcEEEecCccccc--cc-ccc
Confidence 56899999999999999998888 778999999999 87 99999999987 4456777776654422111 11 235
Q ss_pred CeeEEE-EcCCCCC
Q 022298 231 PFDYMS-VTPPYTA 243 (299)
Q Consensus 231 ~fDlI~-iDPPY~~ 243 (299)
+||+|+ .|-=|..
T Consensus 119 ~~D~IlasDv~Y~~ 132 (173)
T PF10294_consen 119 SFDVILASDVLYDE 132 (173)
T ss_dssp SBSEEEEES--S-G
T ss_pred cCCEEEEecccchH
Confidence 899988 6776664
No 134
>PRK08317 hypothetical protein; Provisional
Probab=98.44 E-value=2.3e-06 Score=75.85 Aligned_cols=95 Identities=16% Similarity=0.099 Sum_probs=69.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 022298 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDV 207 (299)
Q Consensus 130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG--a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~ 207 (299)
||-....++.++..+.. ..+.+|||+|||+|.++..++.+. ..+++++|.++..+ +.+++|.... ..+
T Consensus 1 ~~~~~~~~~~~~~~~~~-------~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~-~~a~~~~~~~--~~~ 70 (241)
T PRK08317 1 LPDFRRYRARTFELLAV-------QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAML-ALAKERAAGL--GPN 70 (241)
T ss_pred CchHHHHHHHHHHHcCC-------CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHH-HHHHHHhhCC--CCc
Confidence 46666777777766653 257899999999999999887653 45799999999998 8898884322 234
Q ss_pred EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCC
Q 022298 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPY 241 (299)
Q Consensus 208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY 241 (299)
+++...|+.... ...+.||+|+++--+
T Consensus 71 ~~~~~~d~~~~~-------~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 71 VEFVRGDADGLP-------FPDGSFDAVRSDRVL 97 (241)
T ss_pred eEEEecccccCC-------CCCCCceEEEEechh
Confidence 778888876531 124689999986433
No 135
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.43 E-value=1.5e-06 Score=77.41 Aligned_cols=76 Identities=21% Similarity=0.194 Sum_probs=61.6
Q ss_pred CCCEEEEECCccchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrG--a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f 232 (299)
++.+|||+|||+|.+++.++..+ ..+++++|+++.++ +.+++|+...+..+++.++.+|+.+.. ...+.|
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~~ 122 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGML-AVGREKLRDLGLSGNVEFVQGDAEALP-------FPDNSF 122 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHH-HHHHHhhcccccccCeEEEecccccCC-------CCCCCc
Confidence 46899999999999999988876 36899999999998 999999887666556888888886642 123679
Q ss_pred eEEEEc
Q 022298 233 DYMSVT 238 (299)
Q Consensus 233 DlI~iD 238 (299)
|+|++.
T Consensus 123 D~I~~~ 128 (239)
T PRK00216 123 DAVTIA 128 (239)
T ss_pred cEEEEe
Confidence 999873
No 136
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.43 E-value=1.4e-06 Score=83.15 Aligned_cols=76 Identities=12% Similarity=0.072 Sum_probs=56.4
Q ss_pred CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
..+.+|||+|||+|.+.+.++..|+..|++||.++.++ ..++...+..+...++.+...++.+.- ....||
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml-~q~~~~~~~~~~~~~v~~~~~~ie~lp--------~~~~FD 190 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFL-CQFEAVRKLLDNDKRAILEPLGIEQLH--------ELYAFD 190 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHHHHHhccCCCeEEEECCHHHCC--------CCCCcC
Confidence 56889999999999999998889988899999999886 544333333333345677778876542 124799
Q ss_pred EEEEc
Q 022298 234 YMSVT 238 (299)
Q Consensus 234 lI~iD 238 (299)
+||+.
T Consensus 191 ~V~s~ 195 (314)
T TIGR00452 191 TVFSM 195 (314)
T ss_pred EEEEc
Confidence 99864
No 137
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.41 E-value=1.3e-06 Score=77.87 Aligned_cols=86 Identities=24% Similarity=0.356 Sum_probs=61.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 022298 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208 (299)
Q Consensus 129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~ 208 (299)
..|+-..|.+++ +. ++.+++|||+||.|--++.++++|. .|+++|+|+.++ +.+++-++..+++ +
T Consensus 15 ~~~~hs~v~~a~-~~----------~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al-~~l~~~a~~~~l~--i 79 (192)
T PF03848_consen 15 LTPTHSEVLEAV-PL----------LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVAL-EKLQRLAEEEGLD--I 79 (192)
T ss_dssp B----HHHHHHC-TT----------S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHH-HHHHHHHHHTT-T--E
T ss_pred CCCCcHHHHHHH-hh----------cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHH-HHHHHHHhhcCce--e
Confidence 455556666553 21 4578999999999999999999998 599999999998 8888877777774 7
Q ss_pred EEEEcchhhHHHHHhhhcCCCCCeeEEEE
Q 022298 209 SIHTVRVETFLERAEQFVGKDGPFDYMSV 237 (299)
Q Consensus 209 ~vi~~D~~~~l~~~~~~~~~~~~fDlI~i 237 (299)
+....|+.++. ..+.||+|+.
T Consensus 80 ~~~~~Dl~~~~--------~~~~yD~I~s 100 (192)
T PF03848_consen 80 RTRVADLNDFD--------FPEEYDFIVS 100 (192)
T ss_dssp EEEE-BGCCBS---------TTTEEEEEE
T ss_pred EEEEecchhcc--------ccCCcCEEEE
Confidence 88888987653 1367999974
No 138
>PRK04266 fibrillarin; Provisional
Probab=98.41 E-value=2e-06 Score=78.49 Aligned_cols=78 Identities=14% Similarity=-0.035 Sum_probs=58.0
Q ss_pred CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
++.+|||+|||||.+++.++.+ +..+|+++|+++.++ +.+.++++.. .++.++.+|+....... ...+.||
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml-~~l~~~a~~~---~nv~~i~~D~~~~~~~~----~l~~~~D 143 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPM-RELLEVAEER---KNIIPILADARKPERYA----HVVEKVD 143 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHH-HHHHHHhhhc---CCcEEEECCCCCcchhh----hccccCC
Confidence 5789999999999999988765 334799999999998 8888887653 23778889986421100 0124699
Q ss_pred EEEEcCC
Q 022298 234 YMSVTPP 240 (299)
Q Consensus 234 lI~iDPP 240 (299)
+|+.|-+
T Consensus 144 ~i~~d~~ 150 (226)
T PRK04266 144 VIYQDVA 150 (226)
T ss_pred EEEECCC
Confidence 9998865
No 139
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.40 E-value=1.3e-06 Score=78.24 Aligned_cols=69 Identities=17% Similarity=0.081 Sum_probs=53.3
Q ss_pred CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
.+.+|||+|||+|.+...+... +..++++||+|+.++ +.+++|.. .+.++++|+.+.. ..++||
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l-~~A~~~~~------~~~~~~~d~~~~~--------~~~sfD 107 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAV-EKAKAYLP------NINIIQGSLFDPF--------KDNFFD 107 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHH-HHHHhhCC------CCcEEEeeccCCC--------CCCCEE
Confidence 4678999999999999887765 445799999999998 89988742 2456778876521 246899
Q ss_pred EEEEc
Q 022298 234 YMSVT 238 (299)
Q Consensus 234 lI~iD 238 (299)
+|+++
T Consensus 108 ~V~~~ 112 (204)
T TIGR03587 108 LVLTK 112 (204)
T ss_pred EEEEC
Confidence 99964
No 140
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.40 E-value=1.4e-06 Score=77.62 Aligned_cols=69 Identities=26% Similarity=0.282 Sum_probs=52.8
Q ss_pred CCCEEEEECCccchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
++.+|||||||.|.+--.+.. +++ .+++||+|++.+ ..+.+ .| +.++++|+.+.+... .++.||
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v-~g~GvEid~~~v-~~cv~----rG----v~Viq~Dld~gL~~f-----~d~sFD 77 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQV-DGYGVEIDPDNV-AACVA----RG----VSVIQGDLDEGLADF-----PDQSFD 77 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCC-eEEEEecCHHHH-HHHHH----cC----CCEEECCHHHhHhhC-----CCCCcc
Confidence 589999999999998865544 455 699999999877 33333 24 458999999987654 368999
Q ss_pred EEEEc
Q 022298 234 YMSVT 238 (299)
Q Consensus 234 lI~iD 238 (299)
+|++.
T Consensus 78 ~VIls 82 (193)
T PF07021_consen 78 YVILS 82 (193)
T ss_pred EEehH
Confidence 99974
No 141
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.40 E-value=1.8e-06 Score=84.49 Aligned_cols=80 Identities=11% Similarity=0.091 Sum_probs=66.6
Q ss_pred CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
.+..+||+|||+|.+.+.++.+. ...++|+|+++.++ +.+.+++...++.| +.++++|+..++... ..+.+|
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i-~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~-----~~~s~D 194 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSI-EQVLKQIELLNLKN-LLIINYDARLLLELL-----PSNSVE 194 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHH-HHHHHHHHHcCCCc-EEEEECCHHHhhhhC-----CCCcee
Confidence 35689999999999999987763 34699999999998 99999999999866 899999998765432 257899
Q ss_pred EEEEcCCC
Q 022298 234 YMSVTPPY 241 (299)
Q Consensus 234 lI~iDPPY 241 (299)
.|+++.|.
T Consensus 195 ~I~lnFPd 202 (390)
T PRK14121 195 KIFVHFPV 202 (390)
T ss_pred EEEEeCCC
Confidence 99998764
No 142
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.39 E-value=1.8e-06 Score=77.95 Aligned_cols=92 Identities=21% Similarity=0.190 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 022298 136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (299)
Q Consensus 136 Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga-~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~ 213 (299)
+-..++..|.. .++.+|||+|||||..+--++.. |. .+|++||.++..+ +.+++|++.++..+ ++++.+
T Consensus 60 ~~a~~l~~L~l-------~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~-~~A~~~l~~~~~~n-v~~~~g 130 (209)
T PF01135_consen 60 MVARMLEALDL-------KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELA-ERARRNLARLGIDN-VEVVVG 130 (209)
T ss_dssp HHHHHHHHTTC--------TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHH-HHHHHHHHHHTTHS-EEEEES
T ss_pred HHHHHHHHHhc-------CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHH-HHHHHHHHHhccCc-eeEEEc
Confidence 33344455553 36889999999999988654433 43 3699999999987 99999999999864 889999
Q ss_pred chhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298 214 RVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 214 D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~ 243 (299)
|....+.. ..+||.|++..-...
T Consensus 131 dg~~g~~~-------~apfD~I~v~~a~~~ 153 (209)
T PF01135_consen 131 DGSEGWPE-------EAPFDRIIVTAAVPE 153 (209)
T ss_dssp -GGGTTGG-------G-SEEEEEESSBBSS
T ss_pred chhhcccc-------CCCcCEEEEeeccch
Confidence 98765422 368999999876543
No 143
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.37 E-value=9.9e-07 Score=66.86 Aligned_cols=67 Identities=22% Similarity=0.259 Sum_probs=50.8
Q ss_pred EEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEc
Q 022298 160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVT 238 (299)
Q Consensus 160 LDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iD 238 (299)
||+|||+|..+..+++++..+|+++|.++.++ +.++++....+ ..++++|+.++. -..+.||+|++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~-~~~~~~~~~~~----~~~~~~d~~~l~-------~~~~sfD~v~~~ 67 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEML-EQARKRLKNEG----VSFRQGDAEDLP-------FPDNSFDVVFSN 67 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHH-HHHHHHTTTST----EEEEESBTTSSS-------S-TT-EEEEEEE
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHH-HHHHhcccccC----chheeehHHhCc-------cccccccccccc
Confidence 89999999999988888667899999999998 88888765433 458889987652 235789999864
No 144
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.37 E-value=2.1e-06 Score=79.38 Aligned_cols=85 Identities=19% Similarity=0.074 Sum_probs=63.1
Q ss_pred CCCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~ 231 (299)
.+|.+||+.|.|||+++..++.. ...+|+.+|.+.+.+ +.+++|++.+|+.+++++.+.|+.+.--. ......
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~-~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~----~~~~~~ 113 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRA-EKARKNFERHGLDDNVTVHHRDVCEEGFD----EELESD 113 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHTTCCTTEEEEES-GGCG--S----TT-TTS
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHH-HHHHHHHHHcCCCCCceeEecceeccccc----ccccCc
Confidence 36899999999999999866542 245899999999998 99999999999988899999998632100 011367
Q ss_pred eeEEEEcCCCCC
Q 022298 232 FDYMSVTPPYTA 243 (299)
Q Consensus 232 fDlI~iDPPY~~ 243 (299)
+|.||+|-|--.
T Consensus 114 ~DavfLDlp~Pw 125 (247)
T PF08704_consen 114 FDAVFLDLPDPW 125 (247)
T ss_dssp EEEEEEESSSGG
T ss_pred ccEEEEeCCCHH
Confidence 999999999643
No 145
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.37 E-value=1.5e-06 Score=79.23 Aligned_cols=73 Identities=15% Similarity=0.086 Sum_probs=56.5
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl 234 (299)
...+|||+|||+|.++..+..+|. +|+++|+|+.++ +.++++... ..++++|+.... ...+.||+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l-~~a~~~~~~------~~~~~~d~~~~~-------~~~~~fD~ 106 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPML-AQARQKDAA------DHYLAGDIESLP-------LATATFDL 106 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHH-HHHHhhCCC------CCEEEcCcccCc-------CCCCcEEE
Confidence 467999999999999987777775 799999999998 888877421 346788876532 12468999
Q ss_pred EEEcCCCC
Q 022298 235 MSVTPPYT 242 (299)
Q Consensus 235 I~iDPPY~ 242 (299)
|+++.+..
T Consensus 107 V~s~~~l~ 114 (251)
T PRK10258 107 AWSNLAVQ 114 (251)
T ss_pred EEECchhh
Confidence 99987754
No 146
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.34 E-value=1.9e-06 Score=78.99 Aligned_cols=72 Identities=17% Similarity=0.111 Sum_probs=56.5
Q ss_pred CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
.+.+|||+|||+|.++..++.+. ..+|+++|+++.++ +.++++ .++++++|+.++. ..+.||
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~-~~a~~~--------~~~~~~~d~~~~~--------~~~~fD 91 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMV-AAARER--------GVDARTGDVRDWK--------PKPDTD 91 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHhc--------CCcEEEcChhhCC--------CCCCce
Confidence 57899999999999999887762 24799999999998 887653 2567889987642 136899
Q ss_pred EEEEcCCCCC
Q 022298 234 YMSVTPPYTA 243 (299)
Q Consensus 234 lI~iDPPY~~ 243 (299)
+|+++..+..
T Consensus 92 ~v~~~~~l~~ 101 (255)
T PRK14103 92 VVVSNAALQW 101 (255)
T ss_pred EEEEehhhhh
Confidence 9999887543
No 147
>PRK04148 hypothetical protein; Provisional
Probab=98.33 E-value=4.1e-06 Score=70.67 Aligned_cols=73 Identities=12% Similarity=0.059 Sum_probs=56.8
Q ss_pred CCCEEEEECCccch-HHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGS-VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGa-lgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
.+.++||+|||+|. ++..+...|. .|+++|+|+.++ +.+++| + +.++.+|+++.-... -+.+|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV-~~a~~~----~----~~~v~dDlf~p~~~~------y~~a~ 79 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAV-EKAKKL----G----LNAFVDDLFNPNLEI------YKNAK 79 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHh----C----CeEEECcCCCCCHHH------HhcCC
Confidence 46789999999995 8887777786 699999999998 777665 2 457888987654322 25799
Q ss_pred EEE-EcCCCCC
Q 022298 234 YMS-VTPPYTA 243 (299)
Q Consensus 234 lI~-iDPPY~~ 243 (299)
+|+ +.||...
T Consensus 80 liysirpp~el 90 (134)
T PRK04148 80 LIYSIRPPRDL 90 (134)
T ss_pred EEEEeCCCHHH
Confidence 999 7888775
No 148
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.32 E-value=2.2e-06 Score=76.52 Aligned_cols=72 Identities=19% Similarity=0.090 Sum_probs=58.9
Q ss_pred CEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEE
Q 022298 157 GRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235 (299)
Q Consensus 157 ~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI 235 (299)
++|||+|||+|.+++.++... ..+|+++|+++..+ +.+++|++..++.++++++..|+.... ..++||+|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~-~~a~~~~~~~gl~~~i~~~~~d~~~~~--------~~~~fD~I 71 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQA-EVGRERIRALGLQGRIRIFYRDSAKDP--------FPDTYDLV 71 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHhcCCCcceEEEecccccCC--------CCCCCCEe
Confidence 379999999999999887753 34799999999998 999999999888888889988875431 12579998
Q ss_pred EE
Q 022298 236 SV 237 (299)
Q Consensus 236 ~i 237 (299)
++
T Consensus 72 ~~ 73 (224)
T smart00828 72 FG 73 (224)
T ss_pred eh
Confidence 85
No 149
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.32 E-value=3.7e-06 Score=75.67 Aligned_cols=76 Identities=18% Similarity=0.195 Sum_probs=61.2
Q ss_pred CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
..+.+|||+|||+|.++..++++|+ +++++|.++.++ +.+++|+...+. .++++..|+.++... ..++||
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~-~~a~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~fD 116 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENI-EVARLHALESGL--KIDYRQTTAEELAAE------HPGQFD 116 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHH-HHHHHHHHHcCC--ceEEEecCHHHhhhh------cCCCcc
Confidence 3578999999999999998888876 699999999998 899999887765 367788888766432 236899
Q ss_pred EEEEcC
Q 022298 234 YMSVTP 239 (299)
Q Consensus 234 lI~iDP 239 (299)
+|++.-
T Consensus 117 ~Ii~~~ 122 (233)
T PRK05134 117 VVTCME 122 (233)
T ss_pred EEEEhh
Confidence 998853
No 150
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.31 E-value=2.8e-06 Score=77.73 Aligned_cols=73 Identities=12% Similarity=0.182 Sum_probs=58.2
Q ss_pred CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
.+.+|||+|||+|.++..++.+ +..+|++||+++.++ +.++++. .++.++.+|+..+. ...+||
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i-~~a~~~~------~~~~~~~~d~~~~~--------~~~~fD 95 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAML-AEARSRL------PDCQFVEADIASWQ--------PPQALD 95 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHhC------CCCeEEECchhccC--------CCCCcc
Confidence 4789999999999999887765 345899999999998 8888774 23678889987653 135899
Q ss_pred EEEEcCCCC
Q 022298 234 YMSVTPPYT 242 (299)
Q Consensus 234 lI~iDPPY~ 242 (299)
+|+++..+.
T Consensus 96 ~v~~~~~l~ 104 (258)
T PRK01683 96 LIFANASLQ 104 (258)
T ss_pred EEEEccChh
Confidence 999998764
No 151
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.31 E-value=3.4e-06 Score=79.28 Aligned_cols=71 Identities=21% Similarity=0.207 Sum_probs=61.9
Q ss_pred CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
+|.+|||+|||-|++++.|+.+ |+ +|++|++|++.. +.+++-++..|++++++++-.|..++. ++||
T Consensus 72 ~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~-~~~~~r~~~~gl~~~v~v~l~d~rd~~----------e~fD 139 (283)
T COG2230 72 PGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQL-AYAEKRIAARGLEDNVEVRLQDYRDFE----------EPFD 139 (283)
T ss_pred CCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHH-HHHHHHHHHcCCCcccEEEeccccccc----------cccc
Confidence 6899999999999999999987 55 699999999998 999999999999878999888877653 4588
Q ss_pred EEEE
Q 022298 234 YMSV 237 (299)
Q Consensus 234 lI~i 237 (299)
-|+.
T Consensus 140 rIvS 143 (283)
T COG2230 140 RIVS 143 (283)
T ss_pred eeee
Confidence 7763
No 152
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=98.30 E-value=8.9e-07 Score=82.76 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=57.6
Q ss_pred EEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEE
Q 022298 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV 237 (299)
Q Consensus 158 ~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~i 237 (299)
+|+|||||.|++.+.+...|...|+++|+|+.|+ +..+.|.... ++++|+.++.... ....+|+++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~-~~~~~N~~~~-------~~~~Di~~~~~~~-----~~~~~D~l~~ 68 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAA-ETYEANFPNK-------LIEGDITKIDEKD-----FIPDIDLLTG 68 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHH-HHHHHhCCCC-------CccCccccCchhh-----cCCCCCEEEe
Confidence 6999999999998877778998899999999997 9999986321 4567776654321 0257999999
Q ss_pred cCCCCC
Q 022298 238 TPPYTA 243 (299)
Q Consensus 238 DPPY~~ 243 (299)
+||+..
T Consensus 69 gpPCq~ 74 (275)
T cd00315 69 GFPCQP 74 (275)
T ss_pred CCCChh
Confidence 999973
No 153
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=4.2e-06 Score=77.82 Aligned_cols=78 Identities=17% Similarity=0.155 Sum_probs=63.2
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl 234 (299)
++..||++|+|.|++..+++.+++ +|++||+|+..+ ..+++... ..++++++++|+.++--.. ...++.
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~-~~L~~~~~---~~~n~~vi~~DaLk~d~~~------l~~~~~ 98 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLA-EVLKERFA---PYDNLTVINGDALKFDFPS------LAQPYK 98 (259)
T ss_pred CCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHH-HHHHHhcc---cccceEEEeCchhcCcchh------hcCCCE
Confidence 478999999999999999999987 599999999987 88877654 2356899999998763110 016899
Q ss_pred EEEcCCCCC
Q 022298 235 MSVTPPYTA 243 (299)
Q Consensus 235 I~iDPPY~~ 243 (299)
|+.|.||+-
T Consensus 99 vVaNlPY~I 107 (259)
T COG0030 99 VVANLPYNI 107 (259)
T ss_pred EEEcCCCcc
Confidence 999999985
No 154
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=2.9e-06 Score=76.52 Aligned_cols=76 Identities=18% Similarity=0.166 Sum_probs=62.4
Q ss_pred CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
.++.+||++|||||..+--.+.. +.+|+.||+++.-+ +.+++|++.+|+.| +.++++|....+. ...+||
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L~-~~A~~~L~~lg~~n-V~v~~gDG~~G~~-------~~aPyD 140 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARL-VGRVVSIERIEELA-EQARRNLETLGYEN-VTVRHGDGSKGWP-------EEAPYD 140 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHHH-HHHHHHHHHcCCCc-eEEEECCcccCCC-------CCCCcC
Confidence 36899999999999887544344 34899999999987 99999999999977 9999999876543 236899
Q ss_pred EEEEcC
Q 022298 234 YMSVTP 239 (299)
Q Consensus 234 lI~iDP 239 (299)
.|++.-
T Consensus 141 ~I~Vta 146 (209)
T COG2518 141 RIIVTA 146 (209)
T ss_pred EEEEee
Confidence 999754
No 155
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.28 E-value=6.6e-06 Score=79.43 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=67.6
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 022298 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208 (299)
Q Consensus 130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~ 208 (299)
++.++.+++.++..+... ..+.+|||+|||+|.+++.++.+ +..+|+++|.++.++ +.+++|... .++
T Consensus 94 ~~~~e~~r~~~l~~~~l~------~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL-~~A~~k~~~----~~i 162 (340)
T PLN02490 94 GHWTEDMRDDALEPADLS------DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQL-AKAKQKEPL----KEC 162 (340)
T ss_pred CcchHHHHHHHHhhcccC------CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHhhhc----cCC
Confidence 345666766666554321 24679999999999999887664 445899999999998 888888642 236
Q ss_pred EEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCC
Q 022298 209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT 242 (299)
Q Consensus 209 ~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~ 242 (299)
+++.+|+.+.- ...+.||+|++.....
T Consensus 163 ~~i~gD~e~lp-------~~~~sFDvVIs~~~L~ 189 (340)
T PLN02490 163 KIIEGDAEDLP-------FPTDYADRYVSAGSIE 189 (340)
T ss_pred eEEeccHHhCC-------CCCCceeEEEEcChhh
Confidence 78889987531 1246799999876543
No 156
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.28 E-value=8e-06 Score=76.79 Aligned_cols=83 Identities=17% Similarity=0.234 Sum_probs=67.4
Q ss_pred CCCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~ 231 (299)
.++.+|||+||+.|+=+..++.. +-..++++|+++..+ +.+++|++.+|..+ +.+...|......... ...
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl-~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~-----~~~ 156 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRL-KRLKENLKRLGVFN-VIVINADARKLDPKKP-----ESK 156 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHH-HHHHHHHHHTT-SS-EEEEESHHHHHHHHHH-----TTT
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHH-HHHHHHHHhcCCce-EEEEeecccccccccc-----ccc
Confidence 36789999999999988776653 345899999999998 99999999999876 7777789887754432 246
Q ss_pred eeEEEEcCCCCC
Q 022298 232 FDYMSVTPPYTA 243 (299)
Q Consensus 232 fDlI~iDPPY~~ 243 (299)
||.|++|+|...
T Consensus 157 fd~VlvDaPCSg 168 (283)
T PF01189_consen 157 FDRVLVDAPCSG 168 (283)
T ss_dssp EEEEEEECSCCC
T ss_pred cchhhcCCCccc
Confidence 999999999986
No 157
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.28 E-value=4e-06 Score=83.55 Aligned_cols=73 Identities=12% Similarity=0.083 Sum_probs=57.7
Q ss_pred CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
.+.+|||+|||+|.+++.++.+ |+ +|+++|+++.++ +.+++|.. +...++++..+|+.... ...++||
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvDiS~~~l-~~A~~~~~--~~~~~v~~~~~d~~~~~-------~~~~~fD 334 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDV-HVVGIDLSVNMI-SFALERAI--GRKCSVEFEVADCTKKT-------YPDNSFD 334 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCC-EEEEEECCHHHH-HHHHHHhh--cCCCceEEEEcCcccCC-------CCCCCEE
Confidence 4679999999999999887765 54 799999999998 99999875 33345888999976531 1246899
Q ss_pred EEEEc
Q 022298 234 YMSVT 238 (299)
Q Consensus 234 lI~iD 238 (299)
+|++.
T Consensus 335 ~I~s~ 339 (475)
T PLN02336 335 VIYSR 339 (475)
T ss_pred EEEEC
Confidence 99985
No 158
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.27 E-value=5.1e-06 Score=74.00 Aligned_cols=75 Identities=19% Similarity=0.151 Sum_probs=60.5
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl 234 (299)
.+.+|||+|||+|.++..++..++ +++++|.++.++ +.+++|+...+.. ++++...|+.++... ..++||+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~-~~a~~~~~~~~~~-~~~~~~~d~~~~~~~------~~~~~D~ 115 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENI-EVAKLHAKKDPLL-KIEYRCTSVEDLAEK------GAKSFDV 115 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHH-HHHHHHHHHcCCC-ceEEEeCCHHHhhcC------CCCCccE
Confidence 478999999999999998877776 599999999998 8999999877653 377888888766421 1368999
Q ss_pred EEEc
Q 022298 235 MSVT 238 (299)
Q Consensus 235 I~iD 238 (299)
|+++
T Consensus 116 i~~~ 119 (224)
T TIGR01983 116 VTCM 119 (224)
T ss_pred EEeh
Confidence 9875
No 159
>PLN03075 nicotianamine synthase; Provisional
Probab=98.26 E-value=3.7e-06 Score=79.61 Aligned_cols=76 Identities=17% Similarity=0.125 Sum_probs=59.2
Q ss_pred CCCEEEEECCccchH-HHHHHH-c-CCCEEEEEeCCHHHHHHHHHHHHHH-hCCCCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298 155 RPGRWLDLYSGTGSV-GIEAIS-R-GCSEVHFVEMDPWVVSNVLIPNLEW-TGFLDVSSIHTVRVETFLERAEQFVGKDG 230 (299)
Q Consensus 155 ~~~~VLDLfaGSGal-gIEAlS-r-Ga~~V~~VD~n~~Al~~~a~~N~~~-~g~~~~~~vi~~D~~~~l~~~~~~~~~~~ 230 (299)
.+.+|+|+|||.|.+ ++-++. . ...+++++|+|++++ +.++++++. .++.+++++..+|+.+... ..+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai-~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-------~l~ 194 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSAN-DVARRLVSSDPDLSKRMFFHTADVMDVTE-------SLK 194 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHhhhccCccCCcEEEECchhhccc-------ccC
Confidence 578999999998844 332332 2 345799999999998 999999965 7888889999999877431 136
Q ss_pred CeeEEEEc
Q 022298 231 PFDYMSVT 238 (299)
Q Consensus 231 ~fDlI~iD 238 (299)
.||+||++
T Consensus 195 ~FDlVF~~ 202 (296)
T PLN03075 195 EYDVVFLA 202 (296)
T ss_pred CcCEEEEe
Confidence 89999998
No 160
>PRK05785 hypothetical protein; Provisional
Probab=98.25 E-value=7.2e-06 Score=74.47 Aligned_cols=68 Identities=16% Similarity=0.110 Sum_probs=50.6
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl 234 (299)
.+.+|||+|||||.++.+++.++..+|+++|.++.++ +.++++. ..+++|+.+. .-..++||+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml-~~a~~~~---------~~~~~d~~~l-------p~~d~sfD~ 113 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENML-KMNLVAD---------DKVVGSFEAL-------PFRDKSFDV 113 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHH-HHHHhcc---------ceEEechhhC-------CCCCCCEEE
Confidence 3679999999999999988777324799999999998 8776531 2356776643 123578999
Q ss_pred EEEcC
Q 022298 235 MSVTP 239 (299)
Q Consensus 235 I~iDP 239 (299)
|++.-
T Consensus 114 v~~~~ 118 (226)
T PRK05785 114 VMSSF 118 (226)
T ss_pred EEecC
Confidence 99844
No 161
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.23 E-value=6.8e-06 Score=77.41 Aligned_cols=61 Identities=13% Similarity=0.174 Sum_probs=53.2
Q ss_pred CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~ 217 (299)
.+.++||+|||+|.++++++.+. ..+++++|. +.++ +.+++|++..++.++++++.+|+++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~gl~~rv~~~~~d~~~ 210 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAI-DLVNENAAEKGVADRMRGIAVDIYK 210 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHH-HHHHHHHHhCCccceEEEEecCccC
Confidence 45799999999999999998874 347999998 6787 9999999999998889999999875
No 162
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.21 E-value=1e-05 Score=76.78 Aligned_cols=82 Identities=13% Similarity=0.080 Sum_probs=65.8
Q ss_pred CCCEEEEECCccchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrG--a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f 232 (299)
++..+||+.||.|..+.+++... ..+|+++|.|+.++ +.+++++.. .++++++++|..++..... ..-..+
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al-~~ak~~L~~---~~ri~~i~~~f~~l~~~l~---~~~~~v 91 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAI-AAAKDRLKP---FGRFTLVHGNFSNLKEVLA---EGLGKV 91 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHH-HHHHHhhcc---CCcEEEEeCCHHHHHHHHH---cCCCcc
Confidence 46799999999999999998874 35799999999998 999988755 3579999999988865442 111279
Q ss_pred eEEEEcCCCCC
Q 022298 233 DYMSVTPPYTA 243 (299)
Q Consensus 233 DlI~iDPPY~~ 243 (299)
|.|++|.=...
T Consensus 92 DgIl~DLGvSs 102 (296)
T PRK00050 92 DGILLDLGVSS 102 (296)
T ss_pred CEEEECCCccc
Confidence 99999986554
No 163
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.21 E-value=9.2e-06 Score=75.37 Aligned_cols=72 Identities=18% Similarity=0.098 Sum_probs=55.5
Q ss_pred CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
++.+|||+|||+|..+..++.. |+ +|+++|+++.++ +.++++... .+++.+..+|+.... ...+.||
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~~~-~v~giD~s~~~~-~~a~~~~~~---~~~i~~~~~D~~~~~-------~~~~~FD 119 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKYGA-HVHGVDICEKMV-NIAKLRNSD---KNKIEFEANDILKKD-------FPENTFD 119 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhcCC-EEEEEECCHHHH-HHHHHHcCc---CCceEEEECCcccCC-------CCCCCeE
Confidence 5789999999999998876654 44 799999999998 888887643 345888888876421 1246899
Q ss_pred EEEEc
Q 022298 234 YMSVT 238 (299)
Q Consensus 234 lI~iD 238 (299)
+|++.
T Consensus 120 ~V~s~ 124 (263)
T PTZ00098 120 MIYSR 124 (263)
T ss_pred EEEEh
Confidence 99984
No 164
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.20 E-value=5e-06 Score=73.18 Aligned_cols=74 Identities=20% Similarity=0.138 Sum_probs=53.4
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl 234 (299)
.+.+|||+|||+|.++..++.++...++++|.++.++ +.++++ +++++++|+.+.+... ..++||+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i-~~a~~~--------~~~~~~~d~~~~l~~~-----~~~sfD~ 78 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGV-LACVAR--------GVNVIQGDLDEGLEAF-----PDKSFDY 78 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHH-HHHHHc--------CCeEEEEEhhhccccc-----CCCCcCE
Confidence 4679999999999998876655444689999999987 666432 2467788876533111 2468999
Q ss_pred EEEcCCCC
Q 022298 235 MSVTPPYT 242 (299)
Q Consensus 235 I~iDPPY~ 242 (299)
|++.....
T Consensus 79 Vi~~~~l~ 86 (194)
T TIGR02081 79 VILSQTLQ 86 (194)
T ss_pred EEEhhHhH
Confidence 99987654
No 165
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=7.9e-06 Score=79.26 Aligned_cols=84 Identities=19% Similarity=0.188 Sum_probs=64.8
Q ss_pred CCCCEEEEECCccchHHHHHHHc--C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISR--G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSr--G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~ 230 (299)
.++.+|||+||+-|+=..-.+.. + ...|+++|.++.-+ +.+++|++.+|+.+ +.+++.|...+.... ....
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl-~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~----~~~~ 228 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRL-KRLRENLKRLGVRN-VIVVNKDARRLAELL----PGGE 228 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHH-HHHHHHHHHcCCCc-eEEEecccccccccc----cccC
Confidence 46899999999999766554443 2 23479999999998 99999999999987 778888876554322 1123
Q ss_pred CeeEEEEcCCCCC
Q 022298 231 PFDYMSVTPPYTA 243 (299)
Q Consensus 231 ~fDlI~iDPPY~~ 243 (299)
+||.|++|+|...
T Consensus 229 ~fD~iLlDaPCSg 241 (355)
T COG0144 229 KFDRILLDAPCSG 241 (355)
T ss_pred cCcEEEECCCCCC
Confidence 6999999999985
No 166
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.17 E-value=1.5e-05 Score=70.26 Aligned_cols=73 Identities=21% Similarity=0.240 Sum_probs=57.4
Q ss_pred CCCEEEEECCccchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa--~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f 232 (299)
.+.+|||+|||+|.++..++..+. .+++++|+++.++ +.+++|.. ..++++++.+|+.+.. ...++|
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~-~~~~~~~~---~~~~i~~~~~d~~~~~-------~~~~~~ 107 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEML-EVAKKKSE---LPLNIEFIQADAEALP-------FEDNSF 107 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHH-HHHHHHhc---cCCCceEEecchhcCC-------CCCCcE
Confidence 578999999999999988877665 3799999999998 88988876 2345788888887642 123579
Q ss_pred eEEEEc
Q 022298 233 DYMSVT 238 (299)
Q Consensus 233 DlI~iD 238 (299)
|+|++.
T Consensus 108 D~i~~~ 113 (223)
T TIGR01934 108 DAVTIA 113 (223)
T ss_pred EEEEEe
Confidence 999863
No 167
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.16 E-value=5.7e-06 Score=74.70 Aligned_cols=74 Identities=16% Similarity=0.013 Sum_probs=52.2
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHh-----------CCCCcEEEEEcchhhHHHHHh
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT-----------GFLDVSSIHTVRVETFLERAE 223 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~-----------g~~~~~~vi~~D~~~~l~~~~ 223 (299)
.+.+|||+|||.|.-++.++.+|. .|++||+++.|+ +.+....... .-..+++++++|++++...
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-- 109 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAV-EQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA-- 109 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHH-HHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc--
Confidence 467999999999999999999998 499999999998 7643211000 0013478889998775311
Q ss_pred hhcCCCCCeeEEE
Q 022298 224 QFVGKDGPFDYMS 236 (299)
Q Consensus 224 ~~~~~~~~fDlI~ 236 (299)
..+.||.|+
T Consensus 110 ----~~~~fD~i~ 118 (213)
T TIGR03840 110 ----DLGPVDAVY 118 (213)
T ss_pred ----cCCCcCEEE
Confidence 124677766
No 168
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.14 E-value=2.1e-06 Score=76.64 Aligned_cols=70 Identities=29% Similarity=0.417 Sum_probs=58.1
Q ss_pred CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
+.+++|||+|+|||-.+|.|+..||..|+..|++|... ..++-|++.||+. +.+...|... ....||
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~-~ai~lNa~angv~--i~~~~~d~~g----------~~~~~D 144 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE-QAIRLNAAANGVS--ILFTHADLIG----------SPPAFD 144 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHH-HHhhcchhhccce--eEEeeccccC----------CCccee
Confidence 57999999999999999999999999999999999998 8999999999864 5566655332 245677
Q ss_pred EEE
Q 022298 234 YMS 236 (299)
Q Consensus 234 lI~ 236 (299)
+|+
T Consensus 145 l~L 147 (218)
T COG3897 145 LLL 147 (218)
T ss_pred EEE
Confidence 765
No 169
>PRK06922 hypothetical protein; Provisional
Probab=98.13 E-value=1e-05 Score=83.77 Aligned_cols=80 Identities=9% Similarity=0.020 Sum_probs=61.1
Q ss_pred CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
.+.+|||+|||+|.++..++.+ ...+|+++|+++.++ +.+++|....+. ++.++++|+.++.... ..+.||
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ML-e~Ararl~~~g~--~ie~I~gDa~dLp~~f-----edeSFD 489 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVI-DTLKKKKQNEGR--SWNVIKGDAINLSSSF-----EKESVD 489 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhcCC--CeEEEEcchHhCcccc-----CCCCEE
Confidence 5789999999999998766654 335799999999998 999998766543 4778889987632111 246899
Q ss_pred EEEEcCCCC
Q 022298 234 YMSVTPPYT 242 (299)
Q Consensus 234 lI~iDPPY~ 242 (299)
+|++++++.
T Consensus 490 vVVsn~vLH 498 (677)
T PRK06922 490 TIVYSSILH 498 (677)
T ss_pred EEEEchHHH
Confidence 999998764
No 170
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.13 E-value=7.4e-06 Score=74.23 Aligned_cols=74 Identities=16% Similarity=-0.032 Sum_probs=53.4
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHH-HHHHHh----------CCCCcEEEEEcchhhHHHHHh
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLI-PNLEWT----------GFLDVSSIHTVRVETFLERAE 223 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~-~N~~~~----------g~~~~~~vi~~D~~~~l~~~~ 223 (299)
.+.+|||++||.|.-++.++.+|. +|++||+++.|+ +.+. +|-... -...++++.++|++++...
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai-~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~-- 112 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAV-EQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA-- 112 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHH-HHHHHHcCCCccccccccccccccCceEEEECcccCCCcc--
Confidence 467999999999999999999998 499999999998 6543 221000 0124578889998876321
Q ss_pred hhcCCCCCeeEEE
Q 022298 224 QFVGKDGPFDYMS 236 (299)
Q Consensus 224 ~~~~~~~~fDlI~ 236 (299)
....||.|+
T Consensus 113 ----~~~~fd~v~ 121 (218)
T PRK13255 113 ----DLADVDAVY 121 (218)
T ss_pred ----cCCCeeEEE
Confidence 125788887
No 171
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.13 E-value=1.9e-05 Score=70.18 Aligned_cols=73 Identities=18% Similarity=0.180 Sum_probs=55.3
Q ss_pred CCCEEEEECCccchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa-~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
.+.+|||+|||+|.++..++..+. .+++++|+++.++ +.++++.. .++.++.+|+.+.. ...+.||
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~-~~~~~~~~-----~~~~~~~~d~~~~~-------~~~~~fD 100 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGML-AQAKTKLS-----ENVQFICGDAEKLP-------LEDSSFD 100 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHH-HHHHHhcC-----CCCeEEecchhhCC-------CCCCcee
Confidence 357899999999999998887763 4589999999987 77776543 24678888877542 1246799
Q ss_pred EEEEcCC
Q 022298 234 YMSVTPP 240 (299)
Q Consensus 234 lI~iDPP 240 (299)
+|+++=.
T Consensus 101 ~vi~~~~ 107 (240)
T TIGR02072 101 LIVSNLA 107 (240)
T ss_pred EEEEhhh
Confidence 9998643
No 172
>PRK06202 hypothetical protein; Provisional
Probab=98.12 E-value=5.3e-06 Score=74.95 Aligned_cols=74 Identities=23% Similarity=0.345 Sum_probs=52.0
Q ss_pred CCCEEEEECCccchHHHHHHH----cCC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCC
Q 022298 155 RPGRWLDLYSGTGSVGIEAIS----RGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlS----rGa-~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~ 229 (299)
.+.+|||+|||+|.++..++. .|. .+|+++|+++.++ +.++++....+ +++...++.... ...
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l-~~a~~~~~~~~----~~~~~~~~~~l~-------~~~ 127 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAV-AFARANPRRPG----VTFRQAVSDELV-------AEG 127 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHH-HHHHhccccCC----CeEEEEeccccc-------ccC
Confidence 467999999999999887653 242 3799999999998 89988765443 334444443321 124
Q ss_pred CCeeEEEEcCC
Q 022298 230 GPFDYMSVTPP 240 (299)
Q Consensus 230 ~~fDlI~iDPP 240 (299)
++||+|+++--
T Consensus 128 ~~fD~V~~~~~ 138 (232)
T PRK06202 128 ERFDVVTSNHF 138 (232)
T ss_pred CCccEEEECCe
Confidence 68999998743
No 173
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.11 E-value=5.7e-06 Score=75.64 Aligned_cols=46 Identities=24% Similarity=0.188 Sum_probs=38.3
Q ss_pred CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~ 199 (299)
..+.+|||+|||||.++..++.+|+.+|++||.++..+...+++|.
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~ 119 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDE 119 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCC
Confidence 5688999999999999999999999999999999976623344443
No 174
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.11 E-value=1.1e-05 Score=75.33 Aligned_cols=79 Identities=22% Similarity=0.169 Sum_probs=67.4
Q ss_pred CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
.++..||++|-|||.+....+..|+ +|+++|+|+..+ .-+.+-.+....++..+++.+|+.+.. ...||
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmv-ael~krv~gtp~~~kLqV~~gD~lK~d---------~P~fd 125 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMV-AELEKRVQGTPKSGKLQVLHGDFLKTD---------LPRFD 125 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHH-HHHHHHhcCCCccceeeEEecccccCC---------Ccccc
Confidence 3678999999999999999999887 599999999998 778777776666688999999976531 36899
Q ss_pred EEEEcCCCCC
Q 022298 234 YMSVTPPYTA 243 (299)
Q Consensus 234 lI~iDPPY~~ 243 (299)
.++.|-||..
T Consensus 126 ~cVsNlPyqI 135 (315)
T KOG0820|consen 126 GCVSNLPYQI 135 (315)
T ss_pred eeeccCCccc
Confidence 9999999985
No 175
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.09 E-value=1.1e-05 Score=72.37 Aligned_cols=75 Identities=12% Similarity=0.010 Sum_probs=52.0
Q ss_pred CCCEEEEECCccchHHHHHHHcC-C-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHH--HHHhhhcCCCC
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRG-C-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL--ERAEQFVGKDG 230 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrG-a-~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l--~~~~~~~~~~~ 230 (299)
.+.+|||+|||+|.++..++.+. . .+|++||+++. . ...+ ++++++|+.+.. ..+.. ....+
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-~-----------~~~~-v~~i~~D~~~~~~~~~i~~-~~~~~ 116 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-D-----------PIVG-VDFLQGDFRDELVLKALLE-RVGDS 116 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-c-----------CCCC-cEEEecCCCChHHHHHHHH-HhCCC
Confidence 57799999999999999888763 2 47999999872 1 1223 678999987642 11100 01246
Q ss_pred CeeEEEEcC-CCCC
Q 022298 231 PFDYMSVTP-PYTA 243 (299)
Q Consensus 231 ~fDlI~iDP-PY~~ 243 (299)
.||+|++|+ |+..
T Consensus 117 ~~D~V~S~~~~~~~ 130 (209)
T PRK11188 117 KVQVVMSDMAPNMS 130 (209)
T ss_pred CCCEEecCCCCccC
Confidence 899999997 5443
No 176
>PHA01634 hypothetical protein
Probab=98.09 E-value=7.8e-06 Score=68.50 Aligned_cols=75 Identities=12% Similarity=0.011 Sum_probs=60.1
Q ss_pred CCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298 153 SLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (299)
Q Consensus 153 ~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f 232 (299)
++.+.+|+|+||+.|.-+|..+.+||++|+++|.++... +..++|++.+.+-+.. +... +|-. .-+.|
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~-k~~een~k~nnI~DK~-v~~~---eW~~-------~Y~~~ 93 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLR-KKWEEVCAYFNICDKA-VMKG---EWNG-------EYEDV 93 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHH-HHHHHHhhhheeeece-eecc---cccc-------cCCCc
Confidence 467999999999999999999999999999999999997 9999999998765543 2222 2211 13678
Q ss_pred eEEEEcC
Q 022298 233 DYMSVTP 239 (299)
Q Consensus 233 DlI~iDP 239 (299)
|+..+|=
T Consensus 94 Di~~iDC 100 (156)
T PHA01634 94 DIFVMDC 100 (156)
T ss_pred ceEEEEc
Confidence 9888874
No 177
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.07 E-value=2.3e-05 Score=76.75 Aligned_cols=70 Identities=19% Similarity=0.129 Sum_probs=55.8
Q ss_pred CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
++.+|||+|||+|.+++.++.+ |+ +|+++|+++.++ +.++++++. . .+++...|..+. .++||
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l-~~A~~~~~~--l--~v~~~~~D~~~l----------~~~fD 230 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQ-KLAQERCAG--L--PVEIRLQDYRDL----------NGQFD 230 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHhcc--C--eEEEEECchhhc----------CCCCC
Confidence 5789999999999999988875 55 799999999998 999998853 2 266777786542 26799
Q ss_pred EEEEcCC
Q 022298 234 YMSVTPP 240 (299)
Q Consensus 234 lI~iDPP 240 (299)
.|++..-
T Consensus 231 ~Ivs~~~ 237 (383)
T PRK11705 231 RIVSVGM 237 (383)
T ss_pred EEEEeCc
Confidence 9987543
No 178
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.07 E-value=1.5e-05 Score=75.67 Aligned_cols=75 Identities=20% Similarity=0.186 Sum_probs=50.7
Q ss_pred CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
+.|.+|||+|||.|..+.+++.+||+.|+++|-+...+ ...+.=.+..|....+..+-.-+++. .. .+.||
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~-~QF~~i~~~lg~~~~~~~lplgvE~L-------p~-~~~FD 184 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFY-LQFEAIKHFLGQDPPVFELPLGVEDL-------PN-LGAFD 184 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHH-HHHHHHHHHhCCCccEEEcCcchhhc-------cc-cCCcC
Confidence 68999999999999999999999999999999988765 22222123334333232222223322 11 47899
Q ss_pred EEEE
Q 022298 234 YMSV 237 (299)
Q Consensus 234 lI~i 237 (299)
+||+
T Consensus 185 tVF~ 188 (315)
T PF08003_consen 185 TVFS 188 (315)
T ss_pred EEEE
Confidence 9994
No 179
>PTZ00146 fibrillarin; Provisional
Probab=98.07 E-value=2.2e-05 Score=74.26 Aligned_cols=100 Identities=11% Similarity=-0.105 Sum_probs=67.4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 022298 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206 (299)
Q Consensus 129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~ 206 (299)
..|-.+++..++++-+.... ..++.+|||||||+|.+...++.. | ...|++||+++++. +.+.+-++.. .
T Consensus 110 w~p~rSKlaa~i~~g~~~l~----IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~-~dLl~~ak~r---~ 181 (293)
T PTZ00146 110 WNPFRSKLAAAIIGGVANIP----IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSG-RDLTNMAKKR---P 181 (293)
T ss_pred eCCcccHHHHHHHCCcceec----cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHH-HHHHHHhhhc---C
Confidence 46777788888877665431 135789999999999999988765 2 34799999998865 4443332221 2
Q ss_pred cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298 207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP 240 (299)
Q Consensus 207 ~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPP 240 (299)
++.++.+|+....... ...+.||+||+|-.
T Consensus 182 NI~~I~~Da~~p~~y~----~~~~~vDvV~~Dva 211 (293)
T PTZ00146 182 NIVPIIEDARYPQKYR----MLVPMVDVIFADVA 211 (293)
T ss_pred CCEEEECCccChhhhh----cccCCCCEEEEeCC
Confidence 3677888876432111 11257999999985
No 180
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.06 E-value=1.3e-05 Score=74.25 Aligned_cols=94 Identities=17% Similarity=0.124 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 022298 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (299)
Q Consensus 134 d~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~ 213 (299)
..+.+.+.+.+.. .++..|||+|+|+|.+.-+.+.++ .++++||+|+..+ +.+++... ...+++++.+
T Consensus 16 ~~~~~~Iv~~~~~-------~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~-~~L~~~~~---~~~~~~vi~~ 83 (262)
T PF00398_consen 16 PNIADKIVDALDL-------SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLA-KHLKERFA---SNPNVEVING 83 (262)
T ss_dssp HHHHHHHHHHHTC-------GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHH-HHHHHHCT---TCSSEEEEES
T ss_pred HHHHHHHHHhcCC-------CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHH-HHHHHHhh---hcccceeeec
Confidence 3466677676653 257899999999999999999888 6899999999987 88887654 3356999999
Q ss_pred chhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298 214 RVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 214 D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~ 243 (299)
|+.++..... .......|+.|.||..
T Consensus 84 D~l~~~~~~~----~~~~~~~vv~NlPy~i 109 (262)
T PF00398_consen 84 DFLKWDLYDL----LKNQPLLVVGNLPYNI 109 (262)
T ss_dssp -TTTSCGGGH----CSSSEEEEEEEETGTG
T ss_pred chhccccHHh----hcCCceEEEEEecccc
Confidence 9987642110 0235679999999964
No 181
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.06 E-value=5.4e-06 Score=76.92 Aligned_cols=71 Identities=20% Similarity=0.190 Sum_probs=53.2
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCC-----cEEEEEcchhhHHHHHhhhcCCC
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD-----VSSIHTVRVETFLERAEQFVGKD 229 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~-----~~~vi~~D~~~~l~~~~~~~~~~ 229 (299)
.|.+|||+|||+|-++..++..|+ .|++||.+++++ +.+++-....-..+ ++++...|++.. .
T Consensus 89 ~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V-~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----------~ 156 (282)
T KOG1270|consen 89 LGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMV-EVANEHKKMDPVLEGAIAYRLEYEDTDVEGL----------T 156 (282)
T ss_pred CCceEEEeccCccccchhhHhhCC-eeEeecccHHHH-HHHHHhhhcCchhccccceeeehhhcchhhc----------c
Confidence 467899999999999998888887 599999999998 99988844332222 234455555543 3
Q ss_pred CCeeEEEE
Q 022298 230 GPFDYMSV 237 (299)
Q Consensus 230 ~~fDlI~i 237 (299)
+.||.|++
T Consensus 157 ~~fDaVvc 164 (282)
T KOG1270|consen 157 GKFDAVVC 164 (282)
T ss_pred cccceeee
Confidence 56999885
No 182
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.06 E-value=1.2e-05 Score=76.13 Aligned_cols=138 Identities=15% Similarity=0.219 Sum_probs=64.7
Q ss_pred cccccccceEEEEeeeeCCeEE-ecCCCCCCCCCHHHHH--HHHHHHHHhcCCCCCCCCCCEEEEECCccchH-HHHHHH
Q 022298 100 QEERTTHRLLQVLGGKARRKKL-LSPKGMDVRPMMEVVK--GAAFDILQSAGGCPASLRPGRWLDLYSGTGSV-GIEAIS 175 (299)
Q Consensus 100 ~~p~~~~~~mrIi~Gk~~Gr~L-~~p~~~~~RPttd~Vr--ealfn~L~~~~~~~~~~~~~~VLDLfaGSGal-gIEAlS 175 (299)
.+|...+.+-+.+--...|..+ .+|++.-.-|-+.|+- ..+.+.|..... ......++||+|+|.-++ .|-+.+
T Consensus 46 ~~~~Av~~Ln~aLLk~dfgl~~wdiP~~~LcP~iP~R~nYi~~i~DlL~~~~~--~~~~~v~glDIGTGAscIYpLLg~~ 123 (299)
T PF05971_consen 46 SDPEAVRELNKALLKHDFGLDVWDIPEGRLCPPIPNRLNYIHWIADLLASSNP--GIPEKVRGLDIGTGASCIYPLLGAK 123 (299)
T ss_dssp TSHHHHHHHHHHHHHHHH--------TTS----HHHHHHHHHHHHHHHT--TC--GCS---EEEEES-TTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCccccCCCCCcCCCCchhHHHHHHHHHHhhcccc--ccccceEeecCCccHHHHHHHHhhh
Confidence 4455444333333334456666 7888765334443422 233344432210 001256899998887754 443333
Q ss_pred -cCCCEEEEEeCCHHHHHHHHHHHHHHh-CCCCcEEEEEcchh-hHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298 176 -RGCSEVHFVEMDPWVVSNVLIPNLEWT-GFLDVSSIHTVRVE-TFLERAEQFVGKDGPFDYMSVTPPYTAV 244 (299)
Q Consensus 176 -rGa~~V~~VD~n~~Al~~~a~~N~~~~-g~~~~~~vi~~D~~-~~l~~~~~~~~~~~~fDlI~iDPPY~~~ 244 (299)
.|. +.++.|+|+.++ +.+++|++.| +++++++++...-. ..+.. +....+.||+.++||||-..
T Consensus 124 ~~~W-~fvaTdID~~sl-~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~---i~~~~e~~dftmCNPPFy~s 190 (299)
T PF05971_consen 124 LYGW-SFVATDIDPKSL-ESARENVERNPNLESRIELRKQKNPDNIFDG---IIQPNERFDFTMCNPPFYSS 190 (299)
T ss_dssp HH---EEEEEES-HHHH-HHHHHHHHHT-T-TTTEEEEE--ST-SSTTT---STT--S-EEEEEE-----SS
T ss_pred hcCC-eEEEecCCHHHH-HHHHHHHHhccccccceEEEEcCCccccchh---hhcccceeeEEecCCccccC
Confidence 465 699999999998 9999999999 99999988765322 11111 12234689999999998763
No 183
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.05 E-value=3.6e-05 Score=72.77 Aligned_cols=104 Identities=9% Similarity=-0.120 Sum_probs=66.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 022298 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206 (299)
Q Consensus 129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG--a~~V~~VD~n~~Al~~~a~~N~~~~g~~~ 206 (299)
+|-..+.+.+..-.+.... ..+.+|||||||||.....++.++ ..+++++|+|+.++ +.+++++....-.-
T Consensus 43 tr~E~~il~~~~~~ia~~~------~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL-~~a~~~l~~~~p~~ 115 (301)
T TIGR03438 43 TRTEAAILERHADEIAAAT------GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADAL-KESAAALAADYPQL 115 (301)
T ss_pred HHHHHHHHHHHHHHHHHhh------CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHH-HHHHHHHHhhCCCc
Confidence 4444454554444444331 246799999999999999888764 24799999999998 89998876532112
Q ss_pred cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCC
Q 022298 207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPY 241 (299)
Q Consensus 207 ~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY 241 (299)
++..+++|+.+.+...... ......+++++-..
T Consensus 116 ~v~~i~gD~~~~~~~~~~~--~~~~~~~~~~gs~~ 148 (301)
T TIGR03438 116 EVHGICADFTQPLALPPEP--AAGRRLGFFPGSTI 148 (301)
T ss_pred eEEEEEEcccchhhhhccc--ccCCeEEEEecccc
Confidence 3667889987654322100 01134566666543
No 184
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.04 E-value=1.2e-05 Score=80.09 Aligned_cols=78 Identities=15% Similarity=0.051 Sum_probs=57.3
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl 234 (299)
.+.+|||+|||+|.++..++.++ .+|++||.++.++ +.+++ ..+...+++++++|+..... ....++||+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l-~~a~~---~~~~~~~i~~~~~d~~~~~~-----~~~~~~fD~ 106 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVI-KKNES---INGHYKNVKFMCADVTSPDL-----NISDGSVDL 106 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHH-HHHHH---HhccCCceEEEEeccccccc-----CCCCCCEEE
Confidence 46799999999999999877775 4799999999987 55433 33333457889999854210 112468999
Q ss_pred EEEcCCCC
Q 022298 235 MSVTPPYT 242 (299)
Q Consensus 235 I~iDPPY~ 242 (299)
|+++.+..
T Consensus 107 I~~~~~l~ 114 (475)
T PLN02336 107 IFSNWLLM 114 (475)
T ss_pred EehhhhHH
Confidence 99998754
No 185
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.02 E-value=8.1e-06 Score=72.33 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=53.7
Q ss_pred CEEEEECCccchHHHHHHHcCCCE-EEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhH
Q 022298 157 GRWLDLYSGTGSVGIEAISRGCSE-VHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (299)
Q Consensus 157 ~~VLDLfaGSGalgIEAlSrGa~~-V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~ 218 (299)
.+|||||||-|.+-..+++.|-.. .++||.++.|+ ++++.-+++.+++|.+++.+.|+.+.
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV-~LA~niAe~~~~~n~I~f~q~DI~~~ 130 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAV-ELAQNIAERDGFSNEIRFQQLDITDP 130 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHH-HHHHHHHHhcCCCcceeEEEeeccCC
Confidence 499999999999999999988654 99999999999 88877778889988899999998763
No 186
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=6.9e-05 Score=70.03 Aligned_cols=120 Identities=19% Similarity=0.076 Sum_probs=85.7
Q ss_pred eeeeCCeEEecCCCCC---CCCCHHHHHHHHH-----------HHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcC-
Q 022298 113 GGKARRKKLLSPKGMD---VRPMMEVVKGAAF-----------DILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG- 177 (299)
Q Consensus 113 ~Gk~~Gr~L~~p~~~~---~RPttd~Vrealf-----------n~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrG- 177 (299)
-|+..|.++.+.+|.. .|||.+.+..++= +.+....+ ..+|.+|++-|.|||+++.. ++|-
T Consensus 52 IGK~~G~~v~sskG~~vylL~PTpELWTl~LphRTQI~Yt~Dia~I~~~L~---i~PGsvV~EsGTGSGSlSha-iaraV 127 (314)
T KOG2915|consen 52 IGKPYGSKVASSKGKFVYLLQPTPELWTLALPHRTQILYTPDIAMILSMLE---IRPGSVVLESGTGSGSLSHA-IARAV 127 (314)
T ss_pred ecCCccceeeecCCcEEEEecCChHHhhhhccCcceEEecccHHHHHHHhc---CCCCCEEEecCCCcchHHHH-HHHhh
Confidence 4888899999877743 6999987554431 11111111 14689999999999999984 4542
Q ss_pred --CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCC
Q 022298 178 --CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT 242 (299)
Q Consensus 178 --a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~ 242 (299)
-.+++-.|....-. +-+++-.+..++.+.+++..-|+-..-- ..+...+|.||+|-|--
T Consensus 128 ~ptGhl~tfefH~~Ra-~ka~eeFr~hgi~~~vt~~hrDVc~~GF-----~~ks~~aDaVFLDlPaP 188 (314)
T KOG2915|consen 128 APTGHLYTFEFHETRA-EKALEEFREHGIGDNVTVTHRDVCGSGF-----LIKSLKADAVFLDLPAP 188 (314)
T ss_pred CcCcceEEEEecHHHH-HHHHHHHHHhCCCcceEEEEeecccCCc-----cccccccceEEEcCCCh
Confidence 25799999988776 7788888888998889998888754211 11246899999999854
No 187
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.91 E-value=8.9e-05 Score=68.23 Aligned_cols=93 Identities=22% Similarity=0.289 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHH-HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022298 136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIE-AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR 214 (299)
Q Consensus 136 Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIE-AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D 214 (299)
++++++ +..++ ++.|+++|=+|=+= .++|. |++....+|+.+|+|.+.+ +.+++.++..|+. ++.+..|
T Consensus 31 ~~Ra~~--~~~~g----dL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll-~fI~~~a~~~gl~--i~~~~~D 100 (243)
T PF01861_consen 31 LRRAAL--MAERG----DLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLL-DFINRVAEEEGLP--IEAVHYD 100 (243)
T ss_dssp HHHHHH--HHHTT-----STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHH-HHHHHHHHHHT----EEEE---
T ss_pred HHHHHH--HHhcC----cccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHH-HHHHHHHHHcCCc--eEEEEec
Confidence 666664 33333 36899999876443 33443 3556667899999999998 9999999999985 8899999
Q ss_pred hhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298 215 VETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 215 ~~~~l~~~~~~~~~~~~fDlI~iDPPY~~ 243 (299)
+...+... ..++||++|.||||..
T Consensus 101 lR~~LP~~-----~~~~fD~f~TDPPyT~ 124 (243)
T PF01861_consen 101 LRDPLPEE-----LRGKFDVFFTDPPYTP 124 (243)
T ss_dssp TTS---TT-----TSS-BSEEEE---SSH
T ss_pred ccccCCHH-----HhcCCCEEEeCCCCCH
Confidence 98877532 2479999999999984
No 188
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.90 E-value=4.8e-05 Score=70.17 Aligned_cols=80 Identities=21% Similarity=0.202 Sum_probs=63.3
Q ss_pred CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCC---CCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGF---LDVSSIHTVRVETFLERAEQFVGKDG 230 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~---~~~~~vi~~D~~~~l~~~~~~~~~~~ 230 (299)
+..+||=+|.|.|+..-|++... ..+|++||+|+..+ +.+++-+..... ..+++++.+|+..+++.. .+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv-~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~------~~ 148 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVV-ELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET------QE 148 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHH-HHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS------SS
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHH-HHHHHhchhhccccCCCceEEEEhhhHHHHHhc------cC
Confidence 57899999999999999887754 57899999999998 999987665432 357999999999999754 34
Q ss_pred -CeeEEEEcCCC
Q 022298 231 -PFDYMSVTPPY 241 (299)
Q Consensus 231 -~fDlI~iDPPY 241 (299)
+||+|++|.+-
T Consensus 149 ~~yDvIi~D~~d 160 (246)
T PF01564_consen 149 EKYDVIIVDLTD 160 (246)
T ss_dssp T-EEEEEEESSS
T ss_pred CcccEEEEeCCC
Confidence 89999999865
No 189
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.89 E-value=2.7e-05 Score=69.65 Aligned_cols=71 Identities=20% Similarity=0.276 Sum_probs=52.0
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl 234 (299)
.-.++||+|||.|.+...++.| +.+++++|+++.|+ +.+++.+... .++++++.|+..+. +.++||+
T Consensus 43 ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al-~~Ar~Rl~~~---~~V~~~~~dvp~~~--------P~~~FDL 109 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRAL-ARARERLAGL---PHVEWIQADVPEFW--------PEGRFDL 109 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHH-HHHHHHTTT----SSEEEEES-TTT-----------SS-EEE
T ss_pred ccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHH-HHHHHhcCCC---CCeEEEECcCCCCC--------CCCCeeE
Confidence 3568999999999999887777 46899999999998 8988877543 35899999998764 2579999
Q ss_pred EEEc
Q 022298 235 MSVT 238 (299)
Q Consensus 235 I~iD 238 (299)
|++=
T Consensus 110 IV~S 113 (201)
T PF05401_consen 110 IVLS 113 (201)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9863
No 190
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.87 E-value=0.00012 Score=61.00 Aligned_cols=39 Identities=33% Similarity=0.371 Sum_probs=34.7
Q ss_pred CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHH
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNV 194 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~ 194 (299)
..+.+|||+|||+|.+...+...|. +++++|+++.++ +.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~-~~ 59 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMI-EK 59 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHH-HH
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHH-hh
Confidence 3688999999999999998888888 799999999987 55
No 191
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.85 E-value=1.5e-06 Score=67.77 Aligned_cols=72 Identities=17% Similarity=0.154 Sum_probs=43.9
Q ss_pred EEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEc
Q 022298 160 LDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVT 238 (299)
Q Consensus 160 LDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iD 238 (299)
||+|||+|.+...++.. ...+++++|+|+.++ +.+++.+...+..+ ...+..+..+.... ...++||+|++-
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l-~~a~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSML-ERARERLAELGNDN-FERLRFDVLDLFDY-----DPPESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTT-STTCCCHHHCT----EEEEE--SSS---C-----CC----SEEEEE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhcCCcc-eeEEEeecCChhhc-----ccccccceehhh
Confidence 79999999999988876 334799999999998 88999888877543 33444443333211 012489999974
No 192
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.85 E-value=0.00012 Score=68.05 Aligned_cols=69 Identities=9% Similarity=0.042 Sum_probs=49.7
Q ss_pred CCCEEEEECCccchHHHHHHHcC----CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRG----CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrG----a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~ 230 (299)
...+|||+|||+|.++..++... ...++++|+++.++ +.++++. ..+.+..+|+.+.. -..+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l-~~A~~~~------~~~~~~~~d~~~lp-------~~~~ 150 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAI-KYAAKRY------PQVTFCVASSHRLP-------FADQ 150 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHH-HHHHHhC------CCCeEEEeecccCC-------CcCC
Confidence 35789999999999988765431 23699999999998 8887652 22567778866531 1246
Q ss_pred CeeEEEE
Q 022298 231 PFDYMSV 237 (299)
Q Consensus 231 ~fDlI~i 237 (299)
.||+|+.
T Consensus 151 sfD~I~~ 157 (272)
T PRK11088 151 SLDAIIR 157 (272)
T ss_pred ceeEEEE
Confidence 7999885
No 193
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.84 E-value=5.1e-05 Score=66.42 Aligned_cols=72 Identities=15% Similarity=0.078 Sum_probs=48.4
Q ss_pred CCCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHH--HHHhhhcCCC
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL--ERAEQFVGKD 229 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l--~~~~~~~~~~ 229 (299)
..+.+|||+|||+|.++..++.+ +..+|+++|+|+.. ... .++++++|+.+.. ...... ...
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------------~~~-~i~~~~~d~~~~~~~~~l~~~-~~~ 96 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------------PIE-NVDFIRGDFTDEEVLNKIRER-VGD 96 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------------cCC-CceEEEeeCCChhHHHHHHHH-hCC
Confidence 35789999999999999877665 34579999999842 112 2567777875431 111000 124
Q ss_pred CCeeEEEEcC
Q 022298 230 GPFDYMSVTP 239 (299)
Q Consensus 230 ~~fDlI~iDP 239 (299)
+.||+|++|+
T Consensus 97 ~~~D~V~~~~ 106 (188)
T TIGR00438 97 DKVDVVMSDA 106 (188)
T ss_pred CCccEEEcCC
Confidence 5799999995
No 194
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.81 E-value=7.2e-05 Score=61.93 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=49.1
Q ss_pred EEEEECCccchHHHHHHHcCCC-EEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022298 158 RWLDLYSGTGSVGIEAISRGCS-EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216 (299)
Q Consensus 158 ~VLDLfaGSGalgIEAlSrGa~-~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~ 216 (299)
.+||+|||.|.+++.++.++.. +|+++|.++.++ +.+++|++.+++.+ +++++..+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~-~~l~~~~~~n~~~~-v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAY-EILEENVKLNNLPN-VVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHH-HHHHHHHHHcCCCc-EEEEEeeee
Confidence 4899999999999998887654 899999999998 99999999998865 778776654
No 195
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.77 E-value=0.00011 Score=66.15 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=52.0
Q ss_pred EEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH
Q 022298 159 WLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220 (299)
Q Consensus 159 VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~ 220 (299)
|.|+||--|.+++.++.+| +.+|+++|+++..+ +.+++|++..++.++++++.+|.++.+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL-~~A~~~i~~~~l~~~i~~rlgdGL~~l~ 62 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPL-EKAKENIAKYGLEDRIEVRLGDGLEVLK 62 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHH-HHHHHHHHHTT-TTTEEEEE-SGGGG--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCcccEEEEECCcccccC
Confidence 6899999999999999998 45799999999998 9999999999999999999999877653
No 196
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.76 E-value=0.00018 Score=66.86 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=58.6
Q ss_pred CCCCEEEEECCccchHHHHHHHc-CC------CEEEEEeCCHHHHHHHHHHHHHHhCCCCc--EEEEEcchhhHHHHHhh
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISR-GC------SEVHFVEMDPWVVSNVLIPNLEWTGFLDV--SSIHTVRVETFLERAEQ 224 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSr-Ga------~~V~~VD~n~~Al~~~a~~N~~~~g~~~~--~~vi~~D~~~~l~~~~~ 224 (299)
..+.++||++||||-+++-.+.. +. .+|+.+|+|+..+ +..++-.+..++... +.++.+|+++.-
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL-~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp----- 172 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHML-AVGKQRAKKRPLKASSRVEWVEGDAEDLP----- 172 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHH-HHHHHHHhhcCCCcCCceEEEeCCcccCC-----
Confidence 35789999999999998877642 33 6899999999998 888888877777644 788999998742
Q ss_pred hcCCCCCeeEEEE
Q 022298 225 FVGKDGPFDYMSV 237 (299)
Q Consensus 225 ~~~~~~~fDlI~i 237 (299)
-....||...+
T Consensus 173 --Fdd~s~D~yTi 183 (296)
T KOG1540|consen 173 --FDDDSFDAYTI 183 (296)
T ss_pred --CCCCcceeEEE
Confidence 23567787554
No 197
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.76 E-value=0.00018 Score=63.00 Aligned_cols=99 Identities=18% Similarity=0.134 Sum_probs=76.4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 022298 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLD 206 (299)
Q Consensus 129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa--~~V~~VD~n~~Al~~~a~~N~~~~g~~~ 206 (299)
.-||++...+.+.+.+... .+.-||++|.|||.+.-..|++|. +.++++|.|++-+ ..+.+- + .
T Consensus 29 I~PsSs~lA~~M~s~I~pe-------sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~-~~L~~~---~--p- 94 (194)
T COG3963 29 ILPSSSILARKMASVIDPE-------SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFV-CHLNQL---Y--P- 94 (194)
T ss_pred ecCCcHHHHHHHHhccCcc-------cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHH-HHHHHh---C--C-
Confidence 6899999999998887652 467999999999999999999985 4699999999987 444332 2 2
Q ss_pred cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298 207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 207 ~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~ 243 (299)
...++++|+++.-.... ..+++.||.|++.-|...
T Consensus 95 ~~~ii~gda~~l~~~l~--e~~gq~~D~viS~lPll~ 129 (194)
T COG3963 95 GVNIINGDAFDLRTTLG--EHKGQFFDSVISGLPLLN 129 (194)
T ss_pred CccccccchhhHHHHHh--hcCCCeeeeEEecccccc
Confidence 25689999987653332 124578999999999865
No 198
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=97.76 E-value=6.1e-06 Score=77.82 Aligned_cols=76 Identities=22% Similarity=0.274 Sum_probs=60.7
Q ss_pred CCCCEEEEECCccchHHH-HHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298 154 LRPGRWLDLYSGTGSVGI-EAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgI-EAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f 232 (299)
..+..++|||||.|.+.+ ..++.||+.|+++|.||.++ +.+++|++.|+..+++.++.+|-... +.....
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~sv-EaLrR~~~~N~V~~r~~i~~gd~R~~--------~~~~~A 263 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSV-EALRRNAEANNVMDRCRITEGDNRNP--------KPRLRA 263 (351)
T ss_pred cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHH-HHHHHHHHhcchHHHHHhhhcccccc--------Cccccc
Confidence 356889999999999999 56788999999999999999 99999999998877777777764321 223456
Q ss_pred eEEEEc
Q 022298 233 DYMSVT 238 (299)
Q Consensus 233 DlI~iD 238 (299)
|-|.+-
T Consensus 264 drVnLG 269 (351)
T KOG1227|consen 264 DRVNLG 269 (351)
T ss_pred hheeec
Confidence 666643
No 199
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=97.74 E-value=8.1e-05 Score=69.27 Aligned_cols=72 Identities=21% Similarity=0.317 Sum_probs=54.5
Q ss_pred EEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEE
Q 022298 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV 237 (299)
Q Consensus 158 ~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~i 237 (299)
+++|||||.|.+.+-+-..|...|.++|+|+.|+ +..+.|.. .+..+|+.++.... +. . .+|+++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~-~~y~~N~~--------~~~~~Di~~~~~~~--l~--~-~~D~l~g 67 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDAC-ETYKANFP--------EVICGDITEIDPSD--LP--K-DVDLLIG 67 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHH-HHHHHHHT--------EEEESHGGGCHHHH--HH--H-T-SEEEE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHH-Hhhhhccc--------cccccccccccccc--cc--c-cceEEEe
Confidence 6999999999999877778888899999999997 99999974 46788988775432 11 1 5999999
Q ss_pred cCCCCC
Q 022298 238 TPPYTA 243 (299)
Q Consensus 238 DPPY~~ 243 (299)
-||...
T Consensus 68 gpPCQ~ 73 (335)
T PF00145_consen 68 GPPCQG 73 (335)
T ss_dssp E---TT
T ss_pred ccCCce
Confidence 999864
No 200
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.70 E-value=0.00011 Score=64.49 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 022298 133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP 197 (299)
Q Consensus 133 td~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~ 197 (299)
...+.+-++..... ++..|||.|||||+.+++|...|- +.+++|+++..+ +++++
T Consensus 177 P~~l~~~lI~~~t~--------~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~-~~a~~ 231 (231)
T PF01555_consen 177 PVELIERLIKASTN--------PGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYC-EIAKK 231 (231)
T ss_dssp -HHHHHHHHHHHS---------TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHH-HHHHH
T ss_pred CHHHHHHHHHhhhc--------cceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHH-HHhcC
Confidence 34555666555543 588999999999999999988875 699999999997 88764
No 201
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.67 E-value=0.00043 Score=61.72 Aligned_cols=77 Identities=18% Similarity=0.141 Sum_probs=59.7
Q ss_pred CCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298 156 PGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (299)
Q Consensus 156 ~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl 234 (299)
...+||+|||.|.+.++.+.+ .-..+++||+....+ ..+.+.+...++.| +.++++|+..++.... ..+.+|-
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v-~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~----~~~~v~~ 91 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRV-AKALRKAEKRGLKN-VRFLRGDARELLRRLF----PPGSVDR 91 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHH-HHHHHHHHHHTTSS-EEEEES-CTTHHHHHS----TTTSEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHH-HHHHHHHHhhcccc-eEEEEccHHHHHhhcc----cCCchhe
Confidence 348999999999999987654 455799999999998 88889999889866 8999999999886542 2467887
Q ss_pred EEEc
Q 022298 235 MSVT 238 (299)
Q Consensus 235 I~iD 238 (299)
|+++
T Consensus 92 i~i~ 95 (195)
T PF02390_consen 92 IYIN 95 (195)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7754
No 202
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.60 E-value=6.8e-05 Score=68.83 Aligned_cols=79 Identities=22% Similarity=0.303 Sum_probs=51.0
Q ss_pred CEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCC--------CCcEEEEEcchhhHHHHHhhhcCC
Q 022298 157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF--------LDVSSIHTVRVETFLERAEQFVGK 228 (299)
Q Consensus 157 ~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~--------~~~~~vi~~D~~~~l~~~~~~~~~ 228 (299)
.+|||.=||-|.=++-+++.|+ +|+++|.||-.. .+++.-++...- ..+++++++|..+++.. .
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia-~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~------~ 148 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIA-ALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQ------P 148 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHH-HHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCC------H
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHH-HHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhh------c
Confidence 4899999999999998888898 599999999876 777765554311 13689999999998752 2
Q ss_pred CCCeeEEEEcCCCCC
Q 022298 229 DGPFDYMSVTPPYTA 243 (299)
Q Consensus 229 ~~~fDlI~iDPPY~~ 243 (299)
...||+|++||-|..
T Consensus 149 ~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 149 DNSFDVVYFDPMFPE 163 (234)
T ss_dssp SS--SEEEE--S---
T ss_pred CCCCCEEEECCCCCC
Confidence 478999999999975
No 203
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.58 E-value=0.0011 Score=60.53 Aligned_cols=83 Identities=19% Similarity=0.194 Sum_probs=66.0
Q ss_pred CCCCEEEEECCccchHHHHH---HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298 154 LRPGRWLDLYSGTGSVGIEA---ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA---lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~ 230 (299)
...+++||+|.-||.-++.. ++.+. +|+++|+|+.+. ++..+=.+..|...+++++++++.+.+.++.+ ....+
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dG-rv~a~eid~~~~-~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~-~~~~~ 148 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDG-RVVAIEIDADAY-EIGLELVKLAGVDHKITFIEGPALESLDELLA-DGESG 148 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCc-eEEEEecChHHH-HHhHHHHHhccccceeeeeecchhhhHHHHHh-cCCCC
Confidence 35789999999999655542 23444 699999999998 99998888899998999999999988876531 12356
Q ss_pred CeeEEEEcC
Q 022298 231 PFDYMSVTP 239 (299)
Q Consensus 231 ~fDlI~iDP 239 (299)
.||++|+|-
T Consensus 149 tfDfaFvDa 157 (237)
T KOG1663|consen 149 TFDFAFVDA 157 (237)
T ss_pred ceeEEEEcc
Confidence 899999997
No 204
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.57 E-value=0.00043 Score=62.40 Aligned_cols=78 Identities=21% Similarity=0.130 Sum_probs=48.2
Q ss_pred CCCEEEEECCccchHHHHH-HHcCCCEEEEEeCCHHHHHHHHHHHHHHh-------CCC-CcEEEEEcchhhHH--HHHh
Q 022298 155 RPGRWLDLYSGTGSVGIEA-ISRGCSEVHFVEMDPWVVSNVLIPNLEWT-------GFL-DVSSIHTVRVETFL--ERAE 223 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEA-lSrGa~~V~~VD~n~~Al~~~a~~N~~~~-------g~~-~~~~vi~~D~~~~l--~~~~ 223 (299)
++..++|||||.|.+-+.| +..++.++++||+.+... +.++.+.+.+ |.. ..+++.++|+.+.. ...
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~-~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~- 119 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELH-DLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI- 119 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHH-HHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH-
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHH-HHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh-
Confidence 5789999999999887764 456898999999999986 7777655432 332 35778888876432 211
Q ss_pred hhcCCCCCeeEEEEcC
Q 022298 224 QFVGKDGPFDYMSVTP 239 (299)
Q Consensus 224 ~~~~~~~~fDlI~iDP 239 (299)
-...|+||+|=
T Consensus 120 -----~s~AdvVf~Nn 130 (205)
T PF08123_consen 120 -----WSDADVVFVNN 130 (205)
T ss_dssp -----GHC-SEEEE--
T ss_pred -----hcCCCEEEEec
Confidence 13568999864
No 205
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.54 E-value=0.00013 Score=67.94 Aligned_cols=73 Identities=11% Similarity=0.052 Sum_probs=45.8
Q ss_pred cCCCCCCCCC--HHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccch----HHHHHHHcC------CCEEEEEeCCHHH
Q 022298 123 SPKGMDVRPM--MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS----VGIEAISRG------CSEVHFVEMDPWV 190 (299)
Q Consensus 123 ~p~~~~~RPt--td~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGa----lgIEAlSrG------a~~V~~VD~n~~A 190 (299)
++...+.|-. .+.+++.+...+..... ...+.+|||+|||||- +++.++..+ ..+|+++|+|+.+
T Consensus 68 i~~T~FfR~~~~~~~l~~~vlp~l~~~~~---~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~ 144 (264)
T smart00138 68 TNETRFFRESKHFEALEEKVLPLLIASRR---HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKA 144 (264)
T ss_pred cCCCcccCCcHHHHHHHHHHhHHHHHhcC---CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHH
Confidence 3455555522 34455555544422110 0135799999999994 666554432 2379999999999
Q ss_pred HHHHHHHHH
Q 022298 191 VSNVLIPNL 199 (299)
Q Consensus 191 l~~~a~~N~ 199 (299)
+ +.+++++
T Consensus 145 L-~~Ar~~~ 152 (264)
T smart00138 145 L-EKARAGI 152 (264)
T ss_pred H-HHHHcCC
Confidence 8 9999864
No 206
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=97.54 E-value=5.1e-05 Score=74.61 Aligned_cols=64 Identities=20% Similarity=0.369 Sum_probs=59.1
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCc-EEEEEcchhhHHH
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV-SSIHTVRVETFLE 220 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~-~~vi~~D~~~~l~ 220 (299)
.|..|-|+|||.|-+++.|+..|+ +|++-|.|++++ ++++.|+..+.+... +++++.|+.+|++
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesi-k~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESI-KWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred CcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHH-HHHHHhccccccchhheeeecccHHHHhh
Confidence 578999999999999999999886 699999999998 999999999998765 8999999999985
No 207
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.54 E-value=0.0004 Score=65.50 Aligned_cols=75 Identities=23% Similarity=0.211 Sum_probs=63.0
Q ss_pred CEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhC--C-CCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298 157 GRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLERAEQFVGKDGPF 232 (299)
Q Consensus 157 ~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g--~-~~~~~vi~~D~~~~l~~~~~~~~~~~~f 232 (299)
.+||=+|.|-|++.-|++... ..++++||+|+..+ +++++=+.... . +.+++++..|..++++.. ..+|
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi-~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~------~~~f 150 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVI-ELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC------EEKF 150 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHH-HHHHHhccCcccccCCCceEEEeccHHHHHHhC------CCcC
Confidence 699999999999999999865 67899999999998 99988665432 2 368899999999999764 2489
Q ss_pred eEEEEc
Q 022298 233 DYMSVT 238 (299)
Q Consensus 233 DlI~iD 238 (299)
|+|++|
T Consensus 151 DvIi~D 156 (282)
T COG0421 151 DVIIVD 156 (282)
T ss_pred CEEEEc
Confidence 999976
No 208
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=6.1e-05 Score=75.23 Aligned_cols=85 Identities=20% Similarity=0.263 Sum_probs=71.3
Q ss_pred CCCEEEEECCccchHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298 155 RPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlS--rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f 232 (299)
.+.++||..|+||..+|-.+. -|+.+|++-|.|+.++ +.+++|++.|+.++.++..+.|+...+-.. ......|
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV-~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~---~~~~~~F 184 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAV-TSIQRNVELNGVEDIVEPHHSDANVLMYEH---PMVAKFF 184 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHH-HHHHhhhhhcCchhhcccccchHHHHHHhc---ccccccc
Confidence 467899999999999998765 3778899999999999 999999999999888888999988776332 1224689
Q ss_pred eEEEEcCCCCCC
Q 022298 233 DYMSVTPPYTAV 244 (299)
Q Consensus 233 DlI~iDPPY~~~ 244 (299)
|+|-+|| |+..
T Consensus 185 DvIDLDP-yGs~ 195 (525)
T KOG1253|consen 185 DVIDLDP-YGSP 195 (525)
T ss_pred ceEecCC-CCCc
Confidence 9999998 9863
No 209
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.49 E-value=0.00015 Score=65.78 Aligned_cols=74 Identities=19% Similarity=0.087 Sum_probs=53.3
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHH-HHHHHHhC---C-------CCcEEEEEcchhhHHHHHh
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL-IPNLEWTG---F-------LDVSSIHTVRVETFLERAE 223 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a-~~N~~~~g---~-------~~~~~vi~~D~~~~l~~~~ 223 (299)
.+.+||+++||.|.-.+.++.+|. +|+++|+++.|+ +.+ ++|..... . .++++++++|++++-..
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai-~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~-- 112 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAI-EQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE-- 112 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHH-HHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS--
T ss_pred CCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHH-HHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh--
Confidence 467999999999999999999997 699999999998 776 33332110 0 23578999999886421
Q ss_pred hhcCCCCCeeEEE
Q 022298 224 QFVGKDGPFDYMS 236 (299)
Q Consensus 224 ~~~~~~~~fDlI~ 236 (299)
..++||+|+
T Consensus 113 ----~~g~fD~iy 121 (218)
T PF05724_consen 113 ----DVGKFDLIY 121 (218)
T ss_dssp ----CHHSEEEEE
T ss_pred ----hcCCceEEE
Confidence 125799988
No 210
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.47 E-value=0.0023 Score=56.71 Aligned_cols=93 Identities=24% Similarity=0.151 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHH-HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEE
Q 022298 133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEA-ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211 (299)
Q Consensus 133 td~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEA-lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi 211 (299)
.+.+.+.+++.|....-+ ...+.+++|+|+|-|-=||-. +.+...+++.+|.+.+-+ ..++.=++.++++| ++++
T Consensus 28 ~~~~~~Hi~DSL~~~~~~--~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~-~FL~~~~~~L~L~n-v~v~ 103 (184)
T PF02527_consen 28 EEIWERHILDSLALLPFL--PDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKV-AFLKEVVRELGLSN-VEVI 103 (184)
T ss_dssp HHHHHHHHHHHHGGGGCS---CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHH-HHHHHHHHHHT-SS-EEEE
T ss_pred HHHHHHHHHHHHHhhhhh--ccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHH-HHHHHHHHHhCCCC-EEEE
Confidence 355667888887653211 112338999999999888874 346666899999999997 99999999999975 9999
Q ss_pred EcchhhHHHHHhhhcCCCCCeeEEEE
Q 022298 212 TVRVETFLERAEQFVGKDGPFDYMSV 237 (299)
Q Consensus 212 ~~D~~~~l~~~~~~~~~~~~fDlI~i 237 (299)
++++++. ....+||+|++
T Consensus 104 ~~R~E~~--------~~~~~fd~v~a 121 (184)
T PF02527_consen 104 NGRAEEP--------EYRESFDVVTA 121 (184)
T ss_dssp ES-HHHT--------TTTT-EEEEEE
T ss_pred Eeeeccc--------ccCCCccEEEe
Confidence 9999881 12478999996
No 211
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.46 E-value=0.00028 Score=64.55 Aligned_cols=75 Identities=17% Similarity=0.045 Sum_probs=54.0
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHH-H-H----H------HhCCCCcEEEEEcchhhHHHHH
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP-N-L----E------WTGFLDVSSIHTVRVETFLERA 222 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~-N-~----~------~~g~~~~~~vi~~D~~~~l~~~ 222 (299)
.+.+||+++||.|--.+.++++|.. |++||+++.|+ +.+.+ | + . ... ...++++++|++++-...
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai-~~~~~e~~~~~~~~~~~~~~~~~-~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAV-LSFFSQNTINYEVIHGNDYKLYK-GDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHH-HHHHHHcCCCcceecccccceec-cCceEEEEccCcCCCccc
Confidence 4689999999999999999999985 99999999998 66544 2 0 0 011 135789999998763100
Q ss_pred hhhcCCCCCeeEEE
Q 022298 223 EQFVGKDGPFDYMS 236 (299)
Q Consensus 223 ~~~~~~~~~fDlI~ 236 (299)
...++||+|+
T Consensus 120 ----~~~~~fD~Vy 129 (226)
T PRK13256 120 ----NNLPVFDIWY 129 (226)
T ss_pred ----cccCCcCeee
Confidence 1125788876
No 212
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.46 E-value=0.00033 Score=70.73 Aligned_cols=104 Identities=15% Similarity=0.159 Sum_probs=71.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc---C--CCEEEEEeCCHHHHHHHHHHHHHHhCC
Q 022298 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR---G--CSEVHFVEMDPWVVSNVLIPNLEWTGF 204 (299)
Q Consensus 130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr---G--a~~V~~VD~n~~Al~~~a~~N~~~~g~ 204 (299)
--|+..|.+.+..++... ...+|+|.+||||++-+.+... . -...++.|+++... ++++.|+-..|+
T Consensus 168 fyTP~~v~~liv~~l~~~-------~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~-~l~~mN~~lhgi 239 (489)
T COG0286 168 FYTPREVSELIVELLDPE-------PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTY-RLAKMNLILHGI 239 (489)
T ss_pred cCChHHHHHHHHHHcCCC-------CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHH-HHHHHHHHHhCC
Confidence 445555666666666541 3459999999999998887642 1 13589999999998 999999998888
Q ss_pred CCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298 205 LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 205 ~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~ 243 (299)
.....+..+|...-..... .....+||+|+.||||..
T Consensus 240 ~~~~~i~~~dtl~~~~~~~--~~~~~~~D~viaNPPf~~ 276 (489)
T COG0286 240 EGDANIRHGDTLSNPKHDD--KDDKGKFDFVIANPPFSG 276 (489)
T ss_pred CccccccccccccCCcccc--cCCccceeEEEeCCCCCc
Confidence 6324455555432111000 012367999999999983
No 213
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.37 E-value=0.0047 Score=56.26 Aligned_cols=153 Identities=15% Similarity=0.091 Sum_probs=78.5
Q ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHH-H-HHHc-CCCEEEEEeCCHHHHHHH
Q 022298 118 RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGI-E-AISR-GCSEVHFVEMDPWVVSNV 194 (299)
Q Consensus 118 Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgI-E-AlSr-Ga~~V~~VD~n~~Al~~~ 194 (299)
|+-|...+|.-.-| -|+.--+|...-.... .-....+.|.|||+|.+-- - ++.+ -...|++-|+|++++ ++
T Consensus 19 G~VL~sApG~p~FP--VRLAsEi~qR~l~~l~---~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL-~l 92 (246)
T PF11599_consen 19 GRVLYSAPGFPAFP--VRLASEIFQRALHYLE---GKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDAL-EL 92 (246)
T ss_dssp TTSS--BTTB------HHHHHHHHHHHHCTSS---S-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHH-HH
T ss_pred CeEEecCCCCCCcc--HHHHHHHHHHHHHhhc---CCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHH-HH
Confidence 55555555432222 2455555555422210 1245689999999996542 2 2332 345799999999998 99
Q ss_pred HHHHHHHhCC-----------------------------------------CCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 195 LIPNLEWTGF-----------------------------------------LDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 195 a~~N~~~~g~-----------------------------------------~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
+++|+..+.. ..-..+.+.|++++-.... + ......|
T Consensus 93 A~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~-~-~~~~~~d 170 (246)
T PF11599_consen 93 ARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAV-L-DAGFTPD 170 (246)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHH-H-HTT---S
T ss_pred HHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhh-h-ccCCCCC
Confidence 9999865411 1124567777777543221 1 1133469
Q ss_pred EEEEcCCCCCC--Ce------------------------EEEEecCCCCCCCCCCCeEEEEEeeecceEEEEee
Q 022298 234 YMSVTPPYTAV--DY------------------------EVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYG 281 (299)
Q Consensus 234 lI~iDPPY~~~--~~------------------------~~vE~~~~~~~~~~~~~l~~~~~r~YG~t~l~~y~ 281 (299)
+|+.|-||+.. +. ..+ ..+...++ .+.+.-++.-+.|+-.+.||+
T Consensus 171 iViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~v-~~k~~Ki~--~~~~r~~~rlKvGkR~~~l~r 241 (246)
T PF11599_consen 171 IVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVAV-SDKGRKIP--HDRFRRLERLKVGKRQAALFR 241 (246)
T ss_dssp EEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEEE-EESSSS-----TTS--SEEEEETTEEEEEEE
T ss_pred EEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEEEE-ecCCcccc--cchhHHHHHHhccceEEEEEe
Confidence 99999999852 11 114 44444444 245666777788999999985
No 214
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.35 E-value=0.00042 Score=66.39 Aligned_cols=76 Identities=21% Similarity=0.259 Sum_probs=59.3
Q ss_pred CCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCC-CeeE
Q 022298 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG-PFDY 234 (299)
Q Consensus 156 ~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~-~fDl 234 (299)
.-+++|||||.|.+.+-+-..|.+-+.++|+|+.|+ +..+.|... ..++..|+..+..... .. .+|+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~-~ty~~n~~~------~~~~~~di~~~~~~~~-----~~~~~Dv 70 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAV-ATYKANFPH------GDIILGDIKELDGEAL-----RKSDVDV 70 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHH-HHHHHhCCC------CceeechHhhcChhhc-----cccCCCE
Confidence 358999999999999877777888899999999998 888888653 2356677776653321 12 7999
Q ss_pred EEEcCCCCC
Q 022298 235 MSVTPPYTA 243 (299)
Q Consensus 235 I~iDPPY~~ 243 (299)
++.-||...
T Consensus 71 ligGpPCQ~ 79 (328)
T COG0270 71 LIGGPPCQD 79 (328)
T ss_pred EEeCCCCcc
Confidence 999999874
No 215
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.34 E-value=0.00035 Score=66.65 Aligned_cols=71 Identities=17% Similarity=0.267 Sum_probs=55.2
Q ss_pred EEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEc
Q 022298 159 WLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVT 238 (299)
Q Consensus 159 VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iD 238 (299)
|+|||||.|.+++-+-..|..-+.++|+++.|+ +..+.|.. + .++.+|+.++.... -..+|+++.-
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~-~ty~~N~~-----~--~~~~~Di~~~~~~~------~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQ-KTYEANFG-----N--KVPFGDITKISPSD------IPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHH-HHHHHhCC-----C--CCCccChhhhhhhh------CCCcCEEEec
Confidence 689999999999877777887788999999997 89888852 2 24567877764211 2468999999
Q ss_pred CCCCC
Q 022298 239 PPYTA 243 (299)
Q Consensus 239 PPY~~ 243 (299)
||...
T Consensus 67 ~PCq~ 71 (315)
T TIGR00675 67 FPCQP 71 (315)
T ss_pred CCCcc
Confidence 99863
No 216
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.30 E-value=0.0017 Score=58.98 Aligned_cols=94 Identities=23% Similarity=0.163 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCC--CCEEEEECCccchHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 022298 130 RPMMEVVKGAAFDILQSAGGCPASLR--PGRWLDLYSGTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206 (299)
Q Consensus 130 RPttd~Vrealfn~L~~~~~~~~~~~--~~~VLDLfaGSGalgIEAl-SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~ 206 (299)
|-..+.+.+.+++.++.... .. +.+|+|+|+|.|-=|+-.+ .+-..+|+.+|.+.+-+ ..++.=.+.+++.|
T Consensus 44 ~~~~e~~~rHilDSl~~~~~----~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~-~FL~~~~~eL~L~n 118 (215)
T COG0357 44 RDPEELWQRHILDSLVLLPY----LDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKI-AFLREVKKELGLEN 118 (215)
T ss_pred CCHHHHHHHHHHHHhhhhhc----ccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHH-HHHHHHHHHhCCCC
Confidence 44456788888888865321 22 5899999999998888744 55444599999999997 89999999999976
Q ss_pred cEEEEEcchhhHHHHHhhhcCCCCC-eeEEEE
Q 022298 207 VSSIHTVRVETFLERAEQFVGKDGP-FDYMSV 237 (299)
Q Consensus 207 ~~~vi~~D~~~~l~~~~~~~~~~~~-fDlI~i 237 (299)
++++++.++++-.. .+ ||+|.+
T Consensus 119 -v~i~~~RaE~~~~~--------~~~~D~vts 141 (215)
T COG0357 119 -VEIVHGRAEEFGQE--------KKQYDVVTS 141 (215)
T ss_pred -eEEehhhHhhcccc--------cccCcEEEe
Confidence 89999999987522 23 999884
No 217
>PRK11524 putative methyltransferase; Provisional
Probab=97.29 E-value=0.00091 Score=62.72 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=39.9
Q ss_pred CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHH
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEW 201 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~ 201 (299)
.+|..|||.|||||+.++.|...|- +.+++|++++.+ +++++-++.
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~-~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYI-KMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHH-HHHHHHHHh
Confidence 3689999999999999998888875 589999999997 888887653
No 218
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.26 E-value=0.00041 Score=63.15 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=54.0
Q ss_pred CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
...+|.|||||+|.-.--.+.| ....++++|.|++++ +-++.- +.+ +++.++|+..|- ....+|
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Ml-a~Aa~r-----lp~-~~f~~aDl~~w~--------p~~~~d 94 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAML-AKAAQR-----LPD-ATFEEADLRTWK--------PEQPTD 94 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHH-HHHHHh-----CCC-CceecccHhhcC--------CCCccc
Confidence 3578999999999876444445 455799999999997 555332 223 678899998873 346899
Q ss_pred EEEEcCCCC
Q 022298 234 YMSVTPPYT 242 (299)
Q Consensus 234 lI~iDPPY~ 242 (299)
++|.|--+.
T Consensus 95 llfaNAvlq 103 (257)
T COG4106 95 LLFANAVLQ 103 (257)
T ss_pred hhhhhhhhh
Confidence 999987655
No 219
>PRK13699 putative methylase; Provisional
Probab=97.24 E-value=0.0014 Score=59.73 Aligned_cols=46 Identities=20% Similarity=0.144 Sum_probs=40.0
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHh
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~ 202 (299)
++..|||.|||||+.++.|...|- +.+++|+++..+ +.+.+-++..
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~-~~~~~r~~~~ 208 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYH-RAGQQRLAAV 208 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHH-HHHHHHHHHH
Confidence 588999999999999998888775 589999999987 8888777654
No 220
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.21 E-value=0.00078 Score=65.14 Aligned_cols=69 Identities=17% Similarity=0.073 Sum_probs=53.2
Q ss_pred CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
..+.++|||||++|.+.-.++.+|+ +|++||..+-+- . +.. .++++.++.|...+... .+.+|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~--~----L~~---~~~V~h~~~d~fr~~p~-------~~~vD 272 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQ--S----LMD---TGQVEHLRADGFKFRPP-------RKNVD 272 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCH--h----hhC---CCCEEEEeccCcccCCC-------CCCCC
Confidence 4688999999999999999999999 799999766432 2 211 24588888888776421 36799
Q ss_pred EEEEcC
Q 022298 234 YMSVTP 239 (299)
Q Consensus 234 lI~iDP 239 (299)
++++|-
T Consensus 273 wvVcDm 278 (357)
T PRK11760 273 WLVCDM 278 (357)
T ss_pred EEEEec
Confidence 999986
No 221
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.10 E-value=0.0063 Score=58.09 Aligned_cols=84 Identities=14% Similarity=0.152 Sum_probs=65.6
Q ss_pred CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
++..++|.=+|-|.-+.+.+.+ +..+|+++|.|+.|+ +.++++++.+ .+++++++++..++...+... ....+|
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al-~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~--~~~~vD 94 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAI-AFAKERLSDF--EGRVVLIHDNFANFFEHLDEL--LVTKID 94 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhc--CCCccc
Confidence 5779999999999999988875 336799999999998 9999988765 467899999988776543211 124799
Q ss_pred EEEEcCCCCC
Q 022298 234 YMSVTPPYTA 243 (299)
Q Consensus 234 lI~iDPPY~~ 243 (299)
.|++|-=...
T Consensus 95 gIl~DLGvSS 104 (305)
T TIGR00006 95 GILVDLGVSS 104 (305)
T ss_pred EEEEeccCCH
Confidence 9999985543
No 222
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.07 E-value=0.00013 Score=66.93 Aligned_cols=75 Identities=24% Similarity=0.325 Sum_probs=51.7
Q ss_pred CCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEE
Q 022298 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235 (299)
Q Consensus 156 ~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI 235 (299)
-.++||||||||-+|.+.-.+ +.+.++||+|..++ +.+.+- |.-+ ++.+.|+..|+... ..++||+|
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl-~kA~eK----g~YD--~L~~Aea~~Fl~~~-----~~er~DLi 192 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENML-AKAHEK----GLYD--TLYVAEAVLFLEDL-----TQERFDLI 192 (287)
T ss_pred cceeeecccCcCcccHhHHHH-HhhccCCchhHHHH-HHHHhc----cchH--HHHHHHHHHHhhhc-----cCCcccch
Confidence 368999999999999765455 56799999999987 655442 2222 35667777776532 25789998
Q ss_pred EEc--CCCCC
Q 022298 236 SVT--PPYTA 243 (299)
Q Consensus 236 ~iD--PPY~~ 243 (299)
..- -||-.
T Consensus 193 ~AaDVl~YlG 202 (287)
T COG4976 193 VAADVLPYLG 202 (287)
T ss_pred hhhhHHHhhc
Confidence 742 25554
No 223
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.02 E-value=0.0018 Score=63.92 Aligned_cols=122 Identities=19% Similarity=0.245 Sum_probs=79.5
Q ss_pred eeeCCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCC-C----CCCCCCEEEEECCccchHH--HHHHHcCCCEEEEEeC
Q 022298 114 GKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGC-P----ASLRPGRWLDLYSGTGSVG--IEAISRGCSEVHFVEM 186 (299)
Q Consensus 114 Gk~~Gr~L~~p~~~~~RPttd~Vrealfn~L~~~~~~-~----~~~~~~~VLDLfaGSGalg--IEAlSrGa~~V~~VD~ 186 (299)
|+|.+.-+.+-++..+-|.+..+.+-.+ +||....+ + ...++.|+||+||-.|.=. |.++-.+-..+++.|.
T Consensus 196 ~~ws~vgl~v~~s~vpigat~e~lag~~-~LQ~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~ 274 (460)
T KOG1122|consen 196 GKWSKVGLVVFDSVVPIGATPEYLAGHY-MLQNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDS 274 (460)
T ss_pred cccccceEEEecCccccCCchhhcccce-eeccCcccceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEeccc
Confidence 4565555554444444555554332221 22221100 0 1246899999999999544 4444444456999999
Q ss_pred CHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298 187 DPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 187 n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~ 243 (299)
|...+ +.++.|+..+|+.+ ..+.+.|..+|-... ..++||-|++|-|...
T Consensus 275 n~~r~-~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~-----~~~~fDRVLLDAPCSG 324 (460)
T KOG1122|consen 275 NENRL-KSLKANLHRLGVTN-TIVSNYDGREFPEKE-----FPGSFDRVLLDAPCSG 324 (460)
T ss_pred chHHH-HHHHHHHHHhCCCc-eEEEccCcccccccc-----cCcccceeeecCCCCC
Confidence 99998 99999999999976 567788887653221 1248999999999986
No 224
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.98 E-value=0.0044 Score=60.42 Aligned_cols=81 Identities=19% Similarity=0.197 Sum_probs=65.7
Q ss_pred CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHh---C--C-CCcEEEEEcchhhHHHHHhhhcC
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWT---G--F-LDVSSIHTVRVETFLERAEQFVG 227 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~---g--~-~~~~~vi~~D~~~~l~~~~~~~~ 227 (299)
...+||=+|.|-|--.-|.+.. +..+++-||.||+++ +.+++|.-.- + + +.+++++..|++.|++..
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~mi-ela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a----- 362 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMI-ELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA----- 362 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHH-HHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh-----
Confidence 3568999999999988888876 478999999999998 9999765322 1 2 247899999999999765
Q ss_pred CCCCeeEEEEcCCCC
Q 022298 228 KDGPFDYMSVTPPYT 242 (299)
Q Consensus 228 ~~~~fDlI~iDPPY~ 242 (299)
.+.||.|++|-|=-
T Consensus 363 -~~~fD~vIVDl~DP 376 (508)
T COG4262 363 -ADMFDVVIVDLPDP 376 (508)
T ss_pred -cccccEEEEeCCCC
Confidence 46999999998743
No 225
>PRK10458 DNA cytosine methylase; Provisional
Probab=96.97 E-value=0.0021 Score=64.76 Aligned_cols=83 Identities=17% Similarity=0.148 Sum_probs=56.0
Q ss_pred CCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH----------Hhhh
Q 022298 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER----------AEQF 225 (299)
Q Consensus 156 ~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~----------~~~~ 225 (299)
.-+++|||||.|.+.+-+-..|..-|.++|+|+.|+ +..+.|.... ....++.+|+.++... ...+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~-~TY~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~ 163 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAV-RTYKANWYCD---PATHRFNEDIRDITLSHKEGVSDEEAAEHI 163 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHH-HHHHHHcCCC---CccceeccChhhCccccccccchhhhhhhh
Confidence 458999999999999877667888889999999997 8988885211 1123445555544210 0000
Q ss_pred cCCCCCeeEEEEcCCCC
Q 022298 226 VGKDGPFDYMSVTPPYT 242 (299)
Q Consensus 226 ~~~~~~fDlI~iDPPY~ 242 (299)
......+|+++.-||..
T Consensus 164 ~~~~p~~DvL~gGpPCQ 180 (467)
T PRK10458 164 RQHIPDHDVLLAGFPCQ 180 (467)
T ss_pred hccCCCCCEEEEcCCCC
Confidence 00113689999999986
No 226
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0021 Score=58.23 Aligned_cols=90 Identities=22% Similarity=0.184 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHH-cCCCE--EEEEeCCHHHHHHHHHHHHHHhCC--------
Q 022298 136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSE--VHFVEMDPWVVSNVLIPNLEWTGF-------- 204 (299)
Q Consensus 136 Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlS-rGa~~--V~~VD~n~~Al~~~a~~N~~~~g~-------- 204 (299)
+-..+|+.|.... .+|.++||+|+|||.++-.+.. -|+.- +++||.-++.+ +..++|++..-.
T Consensus 68 mha~~le~L~~~L-----~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLV-e~Sk~nl~k~i~~~e~~~~~ 141 (237)
T KOG1661|consen 68 MHATALEYLDDHL-----QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELV-EYSKKNLDKDITTSESSSKL 141 (237)
T ss_pred HHHHHHHHHHHhh-----ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHH-HHHHHHHHhhccCchhhhhh
Confidence 3345556665321 3689999999999988765442 23322 49999999998 999999987641
Q ss_pred -CCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEc
Q 022298 205 -LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVT 238 (299)
Q Consensus 205 -~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iD 238 (299)
..+..++.+|...... ...+||.|++-
T Consensus 142 ~~~~l~ivvGDgr~g~~-------e~a~YDaIhvG 169 (237)
T KOG1661|consen 142 KRGELSIVVGDGRKGYA-------EQAPYDAIHVG 169 (237)
T ss_pred ccCceEEEeCCccccCC-------ccCCcceEEEc
Confidence 1346677788765432 24689999986
No 227
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.92 E-value=0.013 Score=55.53 Aligned_cols=80 Identities=19% Similarity=0.169 Sum_probs=64.1
Q ss_pred CCCEEEEECCccchHHHHHHHcC---CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRG---CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrG---a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~ 231 (299)
...+|||++||.|-.-++++... ..+|...|.++..+ +..++-++..|+.+.+++.++|+++..... ....+
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv-~~g~~li~~~gL~~i~~f~~~dAfd~~~l~----~l~p~ 209 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINV-EKGRALIAERGLEDIARFEQGDAFDRDSLA----ALDPA 209 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHH-HHHHHHHHHcCCccceEEEecCCCCHhHhh----ccCCC
Confidence 46799999999999999998642 46899999999998 999999999999987799999998864322 22345
Q ss_pred eeEEEEcC
Q 022298 232 FDYMSVTP 239 (299)
Q Consensus 232 fDlI~iDP 239 (299)
++++++-=
T Consensus 210 P~l~iVsG 217 (311)
T PF12147_consen 210 PTLAIVSG 217 (311)
T ss_pred CCEEEEec
Confidence 66666543
No 228
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=96.81 E-value=0.01 Score=54.37 Aligned_cols=76 Identities=14% Similarity=0.100 Sum_probs=60.4
Q ss_pred CEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEE
Q 022298 157 GRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235 (299)
Q Consensus 157 ~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI 235 (299)
..+||+|||.|.+-++.+.+- -...+|||+....+ ..+.+-+...++. ++.+++.|+..++..+. .++..|-|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v-~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~----~~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGV-AKALKKIKELGLK-NLRLLCGDAVEVLDYLI----PDGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHH-HHHHHHHHHcCCC-cEEEEcCCHHHHHHhcC----CCCCeeEE
Confidence 589999999999999977653 34699999999988 7888888888886 48999999999987652 23366655
Q ss_pred EEc
Q 022298 236 SVT 238 (299)
Q Consensus 236 ~iD 238 (299)
+++
T Consensus 124 ~i~ 126 (227)
T COG0220 124 YIN 126 (227)
T ss_pred EEE
Confidence 543
No 229
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.80 E-value=0.0024 Score=63.45 Aligned_cols=55 Identities=22% Similarity=0.222 Sum_probs=50.7
Q ss_pred CEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 022298 157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (299)
Q Consensus 157 ~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~ 212 (299)
..|||+|+|||-+++.|+..||+.|+++|.-..++ +++++=..++|..+++++++
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~-d~arkI~~kng~SdkI~vIn 122 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMV-DLARKIMHKNGMSDKINVIN 122 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHH-HHHHHHHhcCCCccceeeec
Confidence 46899999999999999999999999999999998 99999999999988887765
No 230
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.80 E-value=0.0065 Score=55.35 Aligned_cols=74 Identities=16% Similarity=0.118 Sum_probs=62.8
Q ss_pred CCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298 156 PGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (299)
Q Consensus 156 ~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl 234 (299)
+.++.|+||--|.++++++..+ +..++++|+++..+ +.+.+|+..+++.+++++..+|.+..+. .+..+|+
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl-~~a~~~v~~~~l~~~i~vr~~dgl~~l~-------~~d~~d~ 88 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPL-ESAIRNVKKNNLSERIDVRLGDGLAVLE-------LEDEIDV 88 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHH-HHHHHHHHhcCCcceEEEeccCCccccC-------ccCCcCE
Confidence 5669999999999999999876 77899999999998 9999999999999999999999866542 2346776
Q ss_pred EEE
Q 022298 235 MSV 237 (299)
Q Consensus 235 I~i 237 (299)
|++
T Consensus 89 ivI 91 (226)
T COG2384 89 IVI 91 (226)
T ss_pred EEE
Confidence 665
No 231
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.0013 Score=56.69 Aligned_cols=88 Identities=22% Similarity=0.289 Sum_probs=63.4
Q ss_pred eEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHH
Q 022298 119 KKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPN 198 (299)
Q Consensus 119 r~L~~p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N 198 (299)
|++++|.- -.|++.+ +.+++.+.. ....+.+|||+|-|-+-+.|+..|+...++||+|+.-+ ...+-.
T Consensus 47 RR~cvPYV---pAtteQv-~nVLSll~~-------n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLV-aysrl~ 114 (199)
T KOG4058|consen 47 RRLCVPYV---PATTEQV-ENVLSLLRG-------NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLV-AYSRLH 114 (199)
T ss_pred heeccccc---CccHHHH-HHHHHHccC-------CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHH-HHHHHH
Confidence 46666652 2344433 344455543 24578999999999999988888988899999999988 788777
Q ss_pred HHHhCCCCcEEEEEcchhhH
Q 022298 199 LEWTGFLDVSSIHTVRVETF 218 (299)
Q Consensus 199 ~~~~g~~~~~~vi~~D~~~~ 218 (299)
.-..|+.....+.+.|..++
T Consensus 115 a~R~g~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 115 AWRAGCAKSTRFRRKDLWKV 134 (199)
T ss_pred HHHHhcccchhhhhhhhhhc
Confidence 66667766666777776554
No 232
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.72 E-value=0.0055 Score=51.42 Aligned_cols=59 Identities=17% Similarity=0.021 Sum_probs=44.9
Q ss_pred CCCEEEEECCccchHHHHHHH-----cCCCEEEEEeCCHHHHHHHHHHHHHHhC--CCCcEEEEEcc
Q 022298 155 RPGRWLDLYSGTGSVGIEAIS-----RGCSEVHFVEMDPWVVSNVLIPNLEWTG--FLDVSSIHTVR 214 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlS-----rGa~~V~~VD~n~~Al~~~a~~N~~~~g--~~~~~~vi~~D 214 (299)
....|+|+|||-|.++..++. .-..+|++||.|+..+ +.+.+..+..+ +..+.+...++
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ 90 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLV-ESAQKRAQKLGSDLEKRLSFIQGD 90 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHH-HHHHHHHHHhcchhhccchhhccc
Confidence 567999999999999987766 3345799999999997 88888888777 33334444444
No 233
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.0013 Score=60.48 Aligned_cols=80 Identities=14% Similarity=0.059 Sum_probs=52.4
Q ss_pred CCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE-cchhhHHHHHhhhcCCCC
Q 022298 152 ASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT-VRVETFLERAEQFVGKDG 230 (299)
Q Consensus 152 ~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~-~D~~~~l~~~~~~~~~~~ 230 (299)
+++.+..+||+||-||.|.--++.+||++|++||....-+ .+= +..+.++.++. .++..+.... -.+
T Consensus 76 l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql-~~k------LR~d~rV~~~E~tN~r~l~~~~-----~~~ 143 (245)
T COG1189 76 LDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQL-HWK------LRNDPRVIVLERTNVRYLTPED-----FTE 143 (245)
T ss_pred cCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCcc-CHh------HhcCCcEEEEecCChhhCCHHH-----ccc
Confidence 3578999999999999999999999999999999977544 221 11123333332 3433322111 124
Q ss_pred CeeEEEEcCCCCC
Q 022298 231 PFDYMSVTPPYTA 243 (299)
Q Consensus 231 ~fDlI~iDPPY~~ 243 (299)
..|++++|--|..
T Consensus 144 ~~d~~v~DvSFIS 156 (245)
T COG1189 144 KPDLIVIDVSFIS 156 (245)
T ss_pred CCCeEEEEeehhh
Confidence 6778888877664
No 234
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=96.69 E-value=0.0031 Score=57.72 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=50.4
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl 234 (299)
...-+||++||||-.|-.....| ...++||+++.++ +.+.+ +... + .++.+|+-.-+. ...+.||-
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML-~~a~~--~e~e--g--dlil~DMG~Glp------frpGtFDg 115 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSML-EQAVE--RELE--G--DLILCDMGEGLP------FRPGTFDG 115 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHH-HHHHH--hhhh--c--CeeeeecCCCCC------CCCCccce
Confidence 46789999999999886655567 5789999999998 88876 3332 1 367788775542 23578997
Q ss_pred EE
Q 022298 235 MS 236 (299)
Q Consensus 235 I~ 236 (299)
++
T Consensus 116 ~I 117 (270)
T KOG1541|consen 116 VI 117 (270)
T ss_pred EE
Confidence 76
No 235
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=96.64 E-value=0.0053 Score=62.15 Aligned_cols=83 Identities=18% Similarity=0.160 Sum_probs=57.2
Q ss_pred CCCEEEEECCccchHHHHHHH---cC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCC-cEEEEEcchhhHHHHHhhhcCC
Q 022298 155 RPGRWLDLYSGTGSVGIEAIS---RG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLD-VSSIHTVRVETFLERAEQFVGK 228 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlS---rG--a~~V~~VD~n~~Al~~~a~~N~~~~g~~~-~~~vi~~D~~~~l~~~~~~~~~ 228 (299)
.++.+.|++||||.+-+++.. .| ....++-|.++... ..++.|+...+... ...+..+|-..-... ..
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~-~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~-----~~ 290 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTY-NLCRMNMILHNIDYANFNIINADTLTTKEW-----EN 290 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHH-HHHHHHHHHcCCCccccCcccCCcCCCccc-----cc
Confidence 357899999999999987653 22 24689999999997 89999987666532 233334443221000 01
Q ss_pred CCCeeEEEEcCCCCC
Q 022298 229 DGPFDYMSVTPPYTA 243 (299)
Q Consensus 229 ~~~fDlI~iDPPY~~ 243 (299)
..+||.|++||||..
T Consensus 291 ~~~~D~v~~NpPf~~ 305 (501)
T TIGR00497 291 ENGFEVVVSNPPYSI 305 (501)
T ss_pred cccCCEEeecCCccc
Confidence 356999999999986
No 236
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.62 E-value=0.0048 Score=58.12 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=65.2
Q ss_pred CCCCCEEEEECCccchHHHH-HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298 153 SLRPGRWLDLYSGTGSVGIE-AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (299)
Q Consensus 153 ~~~~~~VLDLfaGSGalgIE-AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~ 231 (299)
++.|+.++=+| ----.||. ||++-+.+|..||+|.+-+ +.+.+-++..|+.| ++.+.-|+...+..-. ..+
T Consensus 150 DL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli-~fi~k~aee~g~~~-ie~~~~Dlr~plpe~~-----~~k 221 (354)
T COG1568 150 DLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLI-KFIEKVAEELGYNN-IEAFVFDLRNPLPEDL-----KRK 221 (354)
T ss_pred CcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHH-HHHHHHHHHhCccc-hhheeehhcccChHHH-----Hhh
Confidence 47888888776 34455665 3455678999999999998 99999999999865 7788888887765431 478
Q ss_pred eeEEEEcCCCCC
Q 022298 232 FDYMSVTPPYTA 243 (299)
Q Consensus 232 fDlI~iDPPY~~ 243 (299)
||+++.|||+..
T Consensus 222 FDvfiTDPpeTi 233 (354)
T COG1568 222 FDVFITDPPETI 233 (354)
T ss_pred CCeeecCchhhH
Confidence 999999999974
No 237
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.45 E-value=0.0076 Score=54.61 Aligned_cols=63 Identities=14% Similarity=0.047 Sum_probs=46.7
Q ss_pred CCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298 156 PGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (299)
Q Consensus 156 ~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl 234 (299)
..+|+|+|+|+|.++++++.+ ..-+++..|. |..+ +.+++ .++++++.+|+++-+ .. +|+
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~-~~~~~-------~~rv~~~~gd~f~~~---------P~-~D~ 161 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVI-EQAKE-------ADRVEFVPGDFFDPL---------PV-ADV 161 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHH-CCHHH-------TTTEEEEES-TTTCC---------SS-ESE
T ss_pred ccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhh-hcccc-------ccccccccccHHhhh---------cc-ccc
Confidence 468999999999999998875 3347999999 6666 66666 578999999987432 23 999
Q ss_pred EEE
Q 022298 235 MSV 237 (299)
Q Consensus 235 I~i 237 (299)
+++
T Consensus 162 ~~l 164 (241)
T PF00891_consen 162 YLL 164 (241)
T ss_dssp EEE
T ss_pred eee
Confidence 887
No 238
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.39 E-value=0.019 Score=55.33 Aligned_cols=101 Identities=12% Similarity=-0.012 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC---------CCC
Q 022298 136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG---------FLD 206 (299)
Q Consensus 136 Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g---------~~~ 206 (299)
|+..+.+....... ....+.+|||||||=|.--.=-...+..+++++|++..++ +-+++=.+.+. ..=
T Consensus 45 vKs~LI~~~~~~~~--~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si-~ea~~Ry~~~~~~~~~~~~~~~f 121 (331)
T PF03291_consen 45 VKSVLIQKYAKKVK--QNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESI-EEARERYKQLKKRNNSKQYRFDF 121 (331)
T ss_dssp HHHHHHHHHCHCCC--CTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHH-HHHHHHHHHHHTSTT-HTSEECC
T ss_pred HHHHHHHHHHHhhh--ccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHH-HHHHHHHHHhccccccccccccc
Confidence 55555555433210 0125789999999988755444556889999999999998 77777552221 111
Q ss_pred cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298 207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP 240 (299)
Q Consensus 207 ~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPP 240 (299)
...++.+|...-.- ...+.....+||+|-+-=-
T Consensus 122 ~a~f~~~D~f~~~l-~~~~~~~~~~FDvVScQFa 154 (331)
T PF03291_consen 122 IAEFIAADCFSESL-REKLPPRSRKFDVVSCQFA 154 (331)
T ss_dssp EEEEEESTTCCSHH-HCTSSSTTS-EEEEEEES-
T ss_pred hhheeccccccchh-hhhccccCCCcceeehHHH
Confidence 24567777653211 0111112258999987643
No 239
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=96.32 E-value=0.011 Score=53.74 Aligned_cols=94 Identities=17% Similarity=0.117 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchH-HHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEE
Q 022298 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV-GIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (299)
Q Consensus 134 d~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGal-gIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~ 212 (299)
+.-++.+|+-+....+ ......||++|||||+- -..-.+++. +|+++|-|+.+- +++.+.++...-.+-..++.
T Consensus 58 ~~ykrelFs~i~~~~g---k~~K~~vLEvgcGtG~Nfkfy~~~p~~-svt~lDpn~~me-e~~~ks~~E~k~~~~~~fvv 132 (252)
T KOG4300|consen 58 DSYKRELFSGIYYFLG---KSGKGDVLEVGCGTGANFKFYPWKPIN-SVTCLDPNEKME-EIADKSAAEKKPLQVERFVV 132 (252)
T ss_pred HHHHHHHHhhhHHHhc---ccCccceEEecccCCCCcccccCCCCc-eEEEeCCcHHHH-HHHHHHHhhccCcceEEEEe
Confidence 3456778877653311 01234579999999963 332234666 699999999996 99999888775444233777
Q ss_pred cchhhHHHHHhhhcCCCCCeeEEEEc
Q 022298 213 VRVETFLERAEQFVGKDGPFDYMSVT 238 (299)
Q Consensus 213 ~D~~~~l~~~~~~~~~~~~fDlI~iD 238 (299)
++.++.-.. .++++|.|+.-
T Consensus 133 a~ge~l~~l------~d~s~DtVV~T 152 (252)
T KOG4300|consen 133 ADGENLPQL------ADGSYDTVVCT 152 (252)
T ss_pred echhcCccc------ccCCeeeEEEE
Confidence 887765321 25789998853
No 240
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.23 E-value=0.0053 Score=48.39 Aligned_cols=74 Identities=16% Similarity=0.136 Sum_probs=29.7
Q ss_pred EEECCccchHHHHHH---HcCC-CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEE
Q 022298 160 LDLYSGTGSVGIEAI---SRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235 (299)
Q Consensus 160 LDLfaGSGalgIEAl---SrGa-~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI 235 (299)
|++|+..|.-++..+ ..+. .++++||..+. . +..+++++..++.+++++++++..+.+.... .++||+|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~-~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-----~~~~dli 73 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-D-EQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-----DGPIDLI 73 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHH-----H--EEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-c-cccchhhhhcCCCCeEEEEEcCcHHHHHHcC-----CCCEEEE
Confidence 577877776654433 2222 37999999995 2 4556666666777779999999988876552 3689999
Q ss_pred EEcCC
Q 022298 236 SVTPP 240 (299)
Q Consensus 236 ~iDPP 240 (299)
++|=.
T Consensus 74 ~iDg~ 78 (106)
T PF13578_consen 74 FIDGD 78 (106)
T ss_dssp EEES-
T ss_pred EECCC
Confidence 99975
No 241
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=96.14 E-value=0.0078 Score=55.78 Aligned_cols=48 Identities=17% Similarity=0.309 Sum_probs=43.1
Q ss_pred CCCCEEEEECCccchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHh
Q 022298 154 LRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWT 202 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~ 202 (299)
.++..+||+||-+|.+++..++ -|+..+.+||||+.-+ +.|++|++..
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI-~~Ark~~r~~ 105 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLI-QRARKEIRFP 105 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHH-HHHHHhcccc
Confidence 4678999999999999998776 5899999999999998 9999999865
No 242
>PRK00536 speE spermidine synthase; Provisional
Probab=96.02 E-value=0.044 Score=51.29 Aligned_cols=124 Identities=10% Similarity=-0.022 Sum_probs=76.0
Q ss_pred ccccccceEEEEeeeeCCeEEecCCCCCCCCCHH--HHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCC
Q 022298 101 EERTTHRLLQVLGGKARRKKLLSPKGMDVRPMME--VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC 178 (299)
Q Consensus 101 ~p~~~~~~mrIi~Gk~~Gr~L~~p~~~~~RPttd--~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa 178 (299)
.-+..++-+.|..-...|+-|... +... -+.| .=-|.+....... .-..++||=+|.|=|...-|.+...
T Consensus 23 ~~kS~~Q~i~i~es~~fGr~LvLD-~~~~-te~dEfiYHEmLvHppl~~-----h~~pk~VLIiGGGDGg~~REvLkh~- 94 (262)
T PRK00536 23 DVRSEHNILEIFKSKDFGEIAMLN-KQLL-FKNFLHIESELLAHMGGCT-----KKELKEVLIVDGFDLELAHQLFKYD- 94 (262)
T ss_pred ccCCCCcEEEEEEccccccEEEEe-eeee-ecchhhhHHHHHHHHHHhh-----CCCCCeEEEEcCCchHHHHHHHCcC-
Confidence 334445556666666667777766 4331 1112 1123332221110 1246899999999999999999875
Q ss_pred CEEEEEeCCHHHHHHHHHHHHHHh--CCC-CcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298 179 SEVHFVEMDPWVVSNVLIPNLEWT--GFL-DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 179 ~~V~~VD~n~~Al~~~a~~N~~~~--g~~-~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~ 243 (299)
.+|+.||+|++.+ +.+++-+-.+ +++ .+++++. +.... ..++||+|++|-.|..
T Consensus 95 ~~v~mVeID~~Vv-~~~k~~lP~~~~~~~DpRv~l~~-----~~~~~-----~~~~fDVIIvDs~~~~ 151 (262)
T PRK00536 95 THVDFVQADEKIL-DSFISFFPHFHEVKNNKNFTHAK-----QLLDL-----DIKKYDLIICLQEPDI 151 (262)
T ss_pred CeeEEEECCHHHH-HHHHHHCHHHHHhhcCCCEEEee-----hhhhc-----cCCcCCEEEEcCCCCh
Confidence 3899999999998 9999833222 233 4677764 12111 1368999999955554
No 243
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.99 E-value=0.039 Score=56.12 Aligned_cols=79 Identities=13% Similarity=0.047 Sum_probs=58.3
Q ss_pred CCCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
.+..+||+|||.|.+.++.+.+- -..+++||+....+ ..+.+-++..++.| +.+++.|+..+.... ....+|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~-~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~-----~~~sv~ 419 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGV-ANVLKLAGEQNITN-FLLFPNNLDLILNDL-----PNNSLD 419 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHH-HHHHHHHHHcCCCe-EEEEcCCHHHHHHhc-----Cccccc
Confidence 46789999999999999977653 34699999999987 66666677777765 778888876554332 245677
Q ss_pred EEEEcCC
Q 022298 234 YMSVTPP 240 (299)
Q Consensus 234 lI~iDPP 240 (299)
-|+++=|
T Consensus 420 ~i~i~FP 426 (506)
T PRK01544 420 GIYILFP 426 (506)
T ss_pred EEEEECC
Confidence 7776544
No 244
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=95.80 E-value=0.021 Score=52.97 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=44.5
Q ss_pred EEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcC
Q 022298 160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP 239 (299)
Q Consensus 160 LDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDP 239 (299)
|..|.||=.++..+ .|..++.+++|+.+... +.+++|+.. ..++++++.|.++.+... .-+..+=-+|++||
T Consensus 62 l~~YPGSP~ia~~l-lR~qDrl~l~ELHp~d~-~~L~~~~~~---~~~v~v~~~DG~~~l~al---lPP~~rRglVLIDP 133 (245)
T PF04378_consen 62 LRFYPGSPAIAARL-LREQDRLVLFELHPQDF-EALKKNFRR---DRRVRVHHRDGYEGLKAL---LPPPERRGLVLIDP 133 (245)
T ss_dssp --EEE-HHHHHHHH-S-TTSEEEEE--SHHHH-HHHTTS--T---TS-EEEE-S-HHHHHHHH----S-TTS-EEEEE--
T ss_pred cCcCCCCHHHHHHh-CCccceEEEEecCchHH-HHHHHHhcc---CCccEEEeCchhhhhhhh---CCCCCCCeEEEECC
Confidence 77888887777654 45678899999999998 999999764 246899999999887654 12234456999999
Q ss_pred CCCCC
Q 022298 240 PYTAV 244 (299)
Q Consensus 240 PY~~~ 244 (299)
||...
T Consensus 134 pYE~~ 138 (245)
T PF04378_consen 134 PYEQK 138 (245)
T ss_dssp ---ST
T ss_pred CCCCc
Confidence 99974
No 245
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.72 E-value=0.053 Score=51.91 Aligned_cols=84 Identities=12% Similarity=0.032 Sum_probs=58.6
Q ss_pred CCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
.+..++|.=-|.|.-+-+.|.. +..+++++|.|+.|+ +.++++++.+ .+++.+++++..++...+... .....+|
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~-~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~-~~~~~~d 95 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEAL-ERAKERLKKF--DDRFIFIHGNFSNLDEYLKEL-NGINKVD 95 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHH-HHHHCCTCCC--CTTEEEEES-GGGHHHHHHHT-TTTS-EE
T ss_pred CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHH-HHHHHHHhhc--cceEEEEeccHHHHHHHHHHc-cCCCccC
Confidence 5789999999999999988875 336899999999998 8888887644 578999998877665544322 1235899
Q ss_pred EEEEcCCCC
Q 022298 234 YMSVTPPYT 242 (299)
Q Consensus 234 lI~iDPPY~ 242 (299)
-|++|.=..
T Consensus 96 giL~DLGvS 104 (310)
T PF01795_consen 96 GILFDLGVS 104 (310)
T ss_dssp EEEEE-S--
T ss_pred EEEEccccC
Confidence 999998544
No 246
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=95.72 E-value=0.011 Score=54.69 Aligned_cols=58 Identities=17% Similarity=0.151 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCC-CEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 022298 129 VRPMMEVVKGAAFDILQSAGGCPASLRP-GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP 197 (299)
Q Consensus 129 ~RPttd~Vrealfn~L~~~~~~~~~~~~-~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~ 197 (299)
.||.=. -..|+.+... -++ ...+|+|||+|.-++-+++. .++|+++|.|..++ +.+++
T Consensus 15 ARP~YP---tdw~~~ia~~------~~~h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL-~~a~k 73 (261)
T KOG3010|consen 15 ARPSYP---TDWFKKIASR------TEGHRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAML-KVAKK 73 (261)
T ss_pred cCCCCc---HHHHHHHHhh------CCCcceEEEeccCCCcchHHHHHh-hhhheeecCCHHHH-HHhhc
Confidence 466644 2455666543 123 37999999999666655554 67899999999998 88876
No 247
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=95.55 E-value=0.054 Score=50.74 Aligned_cols=61 Identities=21% Similarity=0.180 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHHHH
Q 022298 136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLE 200 (299)
Q Consensus 136 Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlS--rGa~~V~~VD~n~~Al~~~a~~N~~ 200 (299)
+...+|+-+..+.. ++...+|||+|||+|+....+.. ....++++||.|+.+. ++.+.=++
T Consensus 17 ~~~~vl~El~~r~p---~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~-~l~~~l~~ 79 (274)
T PF09243_consen 17 AVYRVLSELRKRLP---DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEML-ELAKRLLR 79 (274)
T ss_pred HHHHHHHHHHHhCc---CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHH-HHHHHHHh
Confidence 44455555554321 35678999999999986654443 2467899999999997 77665443
No 248
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=95.53 E-value=0.09 Score=48.92 Aligned_cols=94 Identities=14% Similarity=0.124 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022298 136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV 215 (299)
Q Consensus 136 Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~ 215 (299)
+.+...+.++.. ..+.. |+.|+||=-++-. +-|+.++..++|..|.-. ..++.|+.. ..++++.++|-
T Consensus 76 ~l~~yl~~i~~l------N~~~~-l~~YpGSP~lA~~-llR~qDRl~l~ELHp~D~-~~L~~~f~~---d~~vrv~~~DG 143 (279)
T COG2961 76 ELEPYLDAVRQL------NPGGG-LRYYPGSPLLARQ-LLREQDRLVLTELHPSDA-PLLRNNFAG---DRRVRVLRGDG 143 (279)
T ss_pred HHHHHHHHHHHh------CCCCC-cccCCCCHHHHHH-HcchhceeeeeecCccHH-HHHHHHhCC---CcceEEEecCc
Confidence 444555555542 12233 9999999777653 457788999999999997 899999762 34688999998
Q ss_pred hhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298 216 ETFLERAEQFVGKDGPFDYMSVTPPYTAV 244 (299)
Q Consensus 216 ~~~l~~~~~~~~~~~~fDlI~iDPPY~~~ 244 (299)
+..+... + .+.++=-+|++||||...
T Consensus 144 ~~~l~a~--L-PP~erRglVLIDPPfE~~ 169 (279)
T COG2961 144 FLALKAH--L-PPKERRGLVLIDPPFELK 169 (279)
T ss_pred HHHHhhh--C-CCCCcceEEEeCCCcccc
Confidence 7766432 1 223455799999999974
No 249
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=95.44 E-value=0.033 Score=50.74 Aligned_cols=75 Identities=21% Similarity=0.210 Sum_probs=49.7
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl 234 (299)
...++||+|||.|-++-..|..-+.+|..||.++.-+ +.+++.+...+ ....++++.-+.+|... ..+||+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl-~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~-------~~~YDl 125 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFL-EQAKEYLGKDN-PRVGEFYCVGLQDFTPE-------EGKYDL 125 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHH-HHHHHHTCCGG-CCEEEEEES-GGG-----------TT-EEE
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHH-HHHHHHhcccC-CCcceEEecCHhhccCC-------CCcEeE
Confidence 4579999999999999877777789999999999987 77876543311 22356788888887532 368999
Q ss_pred EEEc
Q 022298 235 MSVT 238 (299)
Q Consensus 235 I~iD 238 (299)
|.+.
T Consensus 126 IW~Q 129 (218)
T PF05891_consen 126 IWIQ 129 (218)
T ss_dssp EEEE
T ss_pred EEeh
Confidence 9873
No 250
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=94.97 E-value=0.022 Score=60.06 Aligned_cols=46 Identities=35% Similarity=0.518 Sum_probs=40.4
Q ss_pred CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHH
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEW 201 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~ 201 (299)
.++..++|.|||-|++.+||+..|. .|++||.||-|. -.+++-++.
T Consensus 89 ~~~~~~lDPfAG~GSIPlEAlRLG~-~v~AvelnPvAy-lfLKavlEy 134 (875)
T COG1743 89 FEGPKLLDPFAGGGSIPLEALRLGL-EVVAVELNPVAY-LFLKAVLEY 134 (875)
T ss_pred ccCCcccccccCCCccchHHHhcCc-eeEEEecccHHH-HHHHHHHhc
Confidence 3578999999999999999999997 599999999997 777777654
No 251
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=94.86 E-value=0.039 Score=51.99 Aligned_cols=76 Identities=18% Similarity=0.151 Sum_probs=42.4
Q ss_pred CCEEEEECCccchHHHHHHH--cC-CCEEEEEeCCHHHHHHHHHHHHH-HhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298 156 PGRWLDLYSGTGSVGIEAIS--RG-CSEVHFVEMDPWVVSNVLIPNLE-WTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (299)
Q Consensus 156 ~~~VLDLfaGSGalgIEAlS--rG-a~~V~~VD~n~~Al~~~a~~N~~-~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~ 231 (299)
..+|+=+|||.=-++.-.+. .| ...|+++|+|+.|+ +.+++=++ ..++.++.+++.+|+.+.... -..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~-~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d-------l~~ 192 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEAN-ELARRLVASDLGLSKRMSFITADVLDVTYD-------LKE 192 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHH-HHHHHHHH---HH-SSEEEEES-GGGG-GG----------
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHH-HHHHHHHhhcccccCCeEEEecchhccccc-------ccc
Confidence 35888776554333322232 23 23689999999998 89988666 567777899999998765322 257
Q ss_pred eeEEEEcC
Q 022298 232 FDYMSVTP 239 (299)
Q Consensus 232 fDlI~iDP 239 (299)
||+||+--
T Consensus 193 ~DvV~lAa 200 (276)
T PF03059_consen 193 YDVVFLAA 200 (276)
T ss_dssp -SEEEE-T
T ss_pred CCEEEEhh
Confidence 99999765
No 252
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.77 E-value=0.41 Score=45.76 Aligned_cols=82 Identities=12% Similarity=0.114 Sum_probs=64.8
Q ss_pred CCCCEEEEECCccchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSrG--a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~ 231 (299)
.+++..+|.=-|-|.-+-+.|+.+ ..+++++|.|+.|+ +.+++-+..++ ++++++++....+...+... .-.+
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai-~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~--~i~~ 96 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAI-AIAKERLKEFD--GRVTLVHGNFANLAEALKEL--GIGK 96 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHH-HHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc--CCCc
Confidence 357899999999999999888875 35699999999998 99998887765 67999998876665443211 1358
Q ss_pred eeEEEEcCC
Q 022298 232 FDYMSVTPP 240 (299)
Q Consensus 232 fDlI~iDPP 240 (299)
+|-|++|-=
T Consensus 97 vDGiL~DLG 105 (314)
T COG0275 97 VDGILLDLG 105 (314)
T ss_pred eeEEEEecc
Confidence 999999874
No 253
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=94.55 E-value=0.044 Score=52.70 Aligned_cols=81 Identities=20% Similarity=0.211 Sum_probs=56.2
Q ss_pred EEEECCccchHHHHHHHc---CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhH-HHHHhhhcCCCCCeeE
Q 022298 159 WLDLYSGTGSVGIEAISR---GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF-LERAEQFVGKDGPFDY 234 (299)
Q Consensus 159 VLDLfaGSGalgIEAlSr---Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~-l~~~~~~~~~~~~fDl 234 (299)
=+|+ |||+..|+.|-. -.-.-.+.|++...+ +.++.|+..+++.+.+.+++...-+. +.... ....+..||+
T Consensus 106 GiDI--gtgasci~~llg~rq~n~~f~~teidd~s~-~~a~snV~qn~lss~ikvV~~~~~ktll~d~~-~~~~e~~ydF 181 (419)
T KOG2912|consen 106 GIDI--GTGASCIYPLLGARQNNWYFLATEIDDMSF-NYAKSNVEQNNLSSLIKVVKVEPQKTLLMDAL-KEESEIIYDF 181 (419)
T ss_pred eeec--cCchhhhHHhhhchhccceeeeeecccccc-chhhccccccccccceeeEEecchhhcchhhh-ccCccceeeE
Confidence 3677 677788887642 113478899999998 99999999999988888877643222 11110 0112346999
Q ss_pred EEEcCCCCC
Q 022298 235 MSVTPPYTA 243 (299)
Q Consensus 235 I~iDPPY~~ 243 (299)
+.+||||-.
T Consensus 182 cMcNPPFfe 190 (419)
T KOG2912|consen 182 CMCNPPFFE 190 (419)
T ss_pred EecCCchhh
Confidence 999999865
No 254
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=94.39 E-value=0.036 Score=47.95 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=30.3
Q ss_pred CCCEEEEECCccchHHHHHHHcC--CCEEEEEeCCHH
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPW 189 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrG--a~~V~~VD~n~~ 189 (299)
.+.+||||||+.|+++-.++.++ +.+|++||+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 35899999999999999888888 678999999886
No 255
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=94.08 E-value=0.24 Score=45.77 Aligned_cols=47 Identities=28% Similarity=0.380 Sum_probs=39.0
Q ss_pred CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHh
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~ 202 (299)
..+..|||.|+|||+.++.|...|- ..+++|++++-+ +.+.+=+...
T Consensus 221 ~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~-~~~~~r~~~~ 267 (302)
T COG0863 221 FPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYV-EVALKRLQEG 267 (302)
T ss_pred CCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHH-HHHHHHHHhh
Confidence 4689999999999999998877765 589999999987 7776655543
No 256
>PRK11524 putative methyltransferase; Provisional
Probab=94.07 E-value=0.046 Score=51.23 Aligned_cols=31 Identities=23% Similarity=0.316 Sum_probs=25.6
Q ss_pred EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~ 243 (299)
.+++++|+.+++..+ ..++||+||+||||..
T Consensus 9 ~~i~~gD~~~~l~~l-----~~~siDlIitDPPY~~ 39 (284)
T PRK11524 9 KTIIHGDALTELKKI-----PSESVDLIFADPPYNI 39 (284)
T ss_pred CEEEeccHHHHHHhc-----ccCcccEEEECCCccc
Confidence 578999999988654 2568999999999975
No 257
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=94.02 E-value=0.13 Score=50.15 Aligned_cols=88 Identities=18% Similarity=0.153 Sum_probs=58.3
Q ss_pred CCCEEEEECCccchHH---HHHHHcCCC--EEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHh-hh-cC
Q 022298 155 RPGRWLDLYSGTGSVG---IEAISRGCS--EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE-QF-VG 227 (299)
Q Consensus 155 ~~~~VLDLfaGSGalg---IEAlSrGa~--~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~-~~-~~ 227 (299)
++.+|||+||--|+=. +||+..+.. .|++-|.++.-+ ..++.-+...... ...+.+.|+..+-.... .. ..
T Consensus 155 p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~-~~L~~q~~~l~~~-~~~v~~~~~~~~p~~~~~~~~~~ 232 (375)
T KOG2198|consen 155 PGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRL-NMLVHQLKRLPSP-NLLVTNHDASLFPNIYLKDGNDK 232 (375)
T ss_pred CCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHH-HHHHHHHhccCCc-ceeeecccceeccccccccCchh
Confidence 5889999999999776 455554433 699999999987 7777766655433 35566666544322110 00 00
Q ss_pred CCCCeeEEEEcCCCCCC
Q 022298 228 KDGPFDYMSVTPPYTAV 244 (299)
Q Consensus 228 ~~~~fDlI~iDPPY~~~ 244 (299)
....||-|++|-|....
T Consensus 233 ~~~~fDrVLvDVPCS~D 249 (375)
T KOG2198|consen 233 EQLKFDRVLVDVPCSGD 249 (375)
T ss_pred hhhhcceeEEecccCCC
Confidence 12479999999999863
No 258
>PRK13699 putative methylase; Provisional
Probab=93.91 E-value=0.046 Score=49.87 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=25.2
Q ss_pred EEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298 209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 209 ~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~ 243 (299)
+++++|..+.++.+ +.+++|+||.||||+.
T Consensus 3 ~l~~gD~le~l~~l-----pd~SVDLIiTDPPY~i 32 (227)
T PRK13699 3 RFILGNCIDVMARF-----PDNAVDFILTDPPYLV 32 (227)
T ss_pred eEEechHHHHHHhC-----CccccceEEeCCCccc
Confidence 57899999988765 3688999999999973
No 259
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.83 E-value=0.2 Score=45.24 Aligned_cols=75 Identities=12% Similarity=-0.017 Sum_probs=49.1
Q ss_pred CCCEEEEECCccchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHH--HHHhhhcCCCC
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL--ERAEQFVGKDG 230 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa--~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l--~~~~~~~~~~~ 230 (299)
.+.+|+||||--|+.+-.|..+.. ..|++||++|-.. + .+ +.++++|+..-- ..+... -...
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~---~---------~~-V~~iq~d~~~~~~~~~l~~~-l~~~ 110 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP---I---------PG-VIFLQGDITDEDTLEKLLEA-LGGA 110 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc---C---------CC-ceEEeeeccCccHHHHHHHH-cCCC
Confidence 578999999999999998877532 2499999998653 1 12 566777764321 111100 1134
Q ss_pred CeeEEEEcCCCCC
Q 022298 231 PFDYMSVTPPYTA 243 (299)
Q Consensus 231 ~fDlI~iDPPY~~ 243 (299)
++|+|+.|+--+.
T Consensus 111 ~~DvV~sD~ap~~ 123 (205)
T COG0293 111 PVDVVLSDMAPNT 123 (205)
T ss_pred CcceEEecCCCCc
Confidence 5799999985544
No 260
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=93.50 E-value=0.07 Score=48.40 Aligned_cols=36 Identities=19% Similarity=0.434 Sum_probs=25.9
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHH
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVV 191 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al 191 (299)
...+++|+|||+|++++.+..++ ..|+.-|+|+..+
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~~-~~vi~ND~~~~l~ 55 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQPG-KRVIINDINPDLI 55 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC---S-SEEEEEES-HHHH
T ss_pred CCCEEEEEecchhHHHHHhcccc-cceeeeechHHHH
Confidence 47899999999999999876654 4799999999764
No 261
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=93.43 E-value=0.36 Score=46.71 Aligned_cols=82 Identities=17% Similarity=0.055 Sum_probs=55.0
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC-CCC----cEEEEEcchhhHHHHHhhhc-CC
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG-FLD----VSSIHTVRVETFLERAEQFV-GK 228 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g-~~~----~~~vi~~D~~~~l~~~~~~~-~~ 228 (299)
.+..++||+||-|.=.+---..|+...+++||..-.+ +.+++--+... ... .+.++.+|.+... +..+. ..
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI-~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~--l~d~~e~~ 193 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSI-NQARKRYRDMKNRFKKFIFTAVFIAADCFKER--LMDLLEFK 193 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccH-HHHHHHHHHHHhhhhcccceeEEEEeccchhH--HHHhccCC
Confidence 4678999999999988777778899999999999988 88876443221 111 2567888865432 11111 12
Q ss_pred CCCeeEEEEcC
Q 022298 229 DGPFDYMSVTP 239 (299)
Q Consensus 229 ~~~fDlI~iDP 239 (299)
..+||+|-+-=
T Consensus 194 dp~fDivScQF 204 (389)
T KOG1975|consen 194 DPRFDIVSCQF 204 (389)
T ss_pred CCCcceeeeee
Confidence 23489887654
No 262
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=93.21 E-value=0.32 Score=45.28 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=42.0
Q ss_pred CCEEEEECCccchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022298 156 PGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216 (299)
Q Consensus 156 ~~~VLDLfaGSGalgIEAlSrG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~ 216 (299)
..+|+|++||.=-+++-..... ....+++|+|...+ +.+..=+..++... ++...|..
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~v-e~l~~~l~~l~~~~--~~~v~Dl~ 164 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLV-EFLNAFLAVLGVPH--DARVRDLL 164 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHH-HHHHHHHHHTT-CE--EEEEE-TT
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHH-HHHHHHHHhhCCCc--ceeEeeee
Confidence 6799999999999998765442 23799999999998 99999988888753 44444543
No 263
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=93.09 E-value=0.24 Score=44.78 Aligned_cols=83 Identities=17% Similarity=0.110 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE
Q 022298 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208 (299)
Q Consensus 130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~ 208 (299)
-|..+|=|+.+++.|..... -.+.+||+++||||.-+...++. ..-.=.--|.+.... ..++..++..+..|..
T Consensus 4 spAaeRNk~pIl~vL~~~l~----~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~-~sI~a~~~~~~~~Nv~ 78 (204)
T PF06080_consen 4 SPAAERNKDPILEVLKQYLP----DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLR-PSIRAWIAEAGLPNVR 78 (204)
T ss_pred ChhhhhCHhHHHHHHHHHhC----ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHH-hhHHHHHHhcCCcccC
Confidence 35567777788888776421 12335999999999999887764 222344568988886 7888888888876644
Q ss_pred EEEEcchhh
Q 022298 209 SIHTVRVET 217 (299)
Q Consensus 209 ~vi~~D~~~ 217 (299)
.-+..|+.+
T Consensus 79 ~P~~lDv~~ 87 (204)
T PF06080_consen 79 PPLALDVSA 87 (204)
T ss_pred CCeEeecCC
Confidence 445556543
No 264
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.07 E-value=0.5 Score=43.85 Aligned_cols=116 Identities=18% Similarity=0.230 Sum_probs=71.3
Q ss_pred EEecCCCCCCCCCHHH--HHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHH
Q 022298 120 KLLSPKGMDVRPMMEV--VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSN 193 (299)
Q Consensus 120 ~L~~p~~~~~RPttd~--Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~ 193 (299)
...+|++.-.-|-..| -...+-+.|..-.+ ..+-.+.+.||+| +|+--|.-+ ..|- +-++-|+|+.++ +
T Consensus 42 ~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g-~~~~~~i~~LDIG--vGAnCIYPliG~~eYgw-rfvGseid~~sl-~ 116 (292)
T COG3129 42 YWDIPEGFLCPPVPGRADYIHHLADLLASTSG-QIPGKNIRILDIG--VGANCIYPLIGVHEYGW-RFVGSEIDSQSL-S 116 (292)
T ss_pred EecCCCCCcCCCCCChhHHHHHHHHHHHhcCC-CCCcCceEEEeec--cCcccccccccceeecc-eeecCccCHHHH-H
Confidence 3678888653333322 33344455544211 1112456789995 555545433 2355 478999999998 9
Q ss_pred HHHHHHHHh-CCCCcEEEEE-cchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298 194 VLIPNLEWT-GFLDVSSIHT-VRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 194 ~a~~N~~~~-g~~~~~~vi~-~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~ 243 (299)
.++.|+..| +++..+++.. .|-...+.. ....++.||...+||||..
T Consensus 117 sA~~ii~~N~~l~~~I~lr~qk~~~~if~g---iig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 117 SAKAIISANPGLERAIRLRRQKDSDAIFNG---IIGKNERYDATLCNPPFHD 165 (292)
T ss_pred HHHHHHHcCcchhhheeEEeccCccccccc---cccccceeeeEecCCCcch
Confidence 999999988 7776666654 332222211 1234679999999999975
No 265
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=93.03 E-value=0.88 Score=41.78 Aligned_cols=100 Identities=15% Similarity=-0.003 Sum_probs=58.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHH-cC-CCEEEEEeCCHHHHHHHHHHHHHHhCCCC
Q 022298 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206 (299)
Q Consensus 129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlS-rG-a~~V~~VD~n~~Al~~~a~~N~~~~g~~~ 206 (299)
..|-.+++..++++-+.... ..++.+||-|||.||+.---..- -| -..|++||.+++.. +.+- ++..-. .
T Consensus 51 W~P~RSKLaAai~~Gl~~~~----ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~-rdL~-~la~~R--~ 122 (229)
T PF01269_consen 51 WNPFRSKLAAAILKGLENIP----IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM-RDLL-NLAKKR--P 122 (229)
T ss_dssp E-TTT-HHHHHHHTT-S--S------TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHH-HHHHHS--T
T ss_pred cCchhhHHHHHHHcCccccC----CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH-HHHH-HHhccC--C
Confidence 46777788888887765321 13588999999999976543322 13 33599999999987 4443 333322 2
Q ss_pred cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298 207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP 240 (299)
Q Consensus 207 ~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPP 240 (299)
++-.+-.|+....+.. ..-+.+|+||.|=.
T Consensus 123 NIiPIl~DAr~P~~Y~----~lv~~VDvI~~DVa 152 (229)
T PF01269_consen 123 NIIPILEDARHPEKYR----MLVEMVDVIFQDVA 152 (229)
T ss_dssp TEEEEES-TTSGGGGT----TTS--EEEEEEE-S
T ss_pred ceeeeeccCCChHHhh----cccccccEEEecCC
Confidence 3666788987654321 12358999999975
No 266
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.88 E-value=0.56 Score=44.68 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=59.9
Q ss_pred CCCCCEEEEECCccc---hHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhH---HHHHhhhc
Q 022298 153 SLRPGRWLDLYSGTG---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF---LERAEQFV 226 (299)
Q Consensus 153 ~~~~~~VLDLfaGSG---algIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~---l~~~~~~~ 226 (299)
++.+..||==|+|+| .+++|++.||+ ++..+|+|.+.. +-..++++..| ++..+.+|+.+. .....+..
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~-~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk 109 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGN-EETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVK 109 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccch-HHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHH
Confidence 467999999999999 78899999999 689999999997 77777777666 356666665433 22222223
Q ss_pred CCCCCeeEEEEcC
Q 022298 227 GKDGPFDYMSVTP 239 (299)
Q Consensus 227 ~~~~~fDlI~iDP 239 (299)
+.-+..|+++-|-
T Consensus 110 ~e~G~V~ILVNNA 122 (300)
T KOG1201|consen 110 KEVGDVDILVNNA 122 (300)
T ss_pred HhcCCceEEEecc
Confidence 3346789888665
No 267
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=92.80 E-value=0.48 Score=41.24 Aligned_cols=74 Identities=18% Similarity=0.161 Sum_probs=44.6
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl 234 (299)
.+.+|+-++|=|-...+..-.....+++..|.|.+=. . ++ +. .++.-|......-... ..++||+
T Consensus 25 ~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~--~-------~~--~~-~F~fyD~~~p~~~~~~---l~~~~d~ 89 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFE--Q-------FG--GD-EFVFYDYNEPEELPEE---LKGKFDV 89 (162)
T ss_pred CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHH--h-------cC--Cc-ceEECCCCChhhhhhh---cCCCceE
Confidence 4679999988887666654122345699999998743 2 12 11 1233343333221111 1468999
Q ss_pred EEEcCCCCC
Q 022298 235 MSVTPPYTA 243 (299)
Q Consensus 235 I~iDPPY~~ 243 (299)
|++||||-.
T Consensus 90 vv~DPPFl~ 98 (162)
T PF10237_consen 90 VVIDPPFLS 98 (162)
T ss_pred EEECCCCCC
Confidence 999999954
No 268
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=92.70 E-value=0.18 Score=47.22 Aligned_cols=36 Identities=28% Similarity=0.230 Sum_probs=30.2
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHH
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVV 191 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al 191 (299)
...++||+|||-|.+...... -.++|++-|.|+.+.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~-~f~~v~aTE~S~~Mr 129 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAP-LFKEVYATEASPPMR 129 (265)
T ss_pred cCCceEEecCCCcHHHHHHHh-hcceEEeecCCHHHH
Confidence 467899999999999987644 356799999999886
No 269
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=92.33 E-value=0.1 Score=48.34 Aligned_cols=45 Identities=11% Similarity=0.208 Sum_probs=37.8
Q ss_pred EEEEECCccchHHHHHHHcCC---CEEEEEeCCHHHHHHHHHHHHHHhC
Q 022298 158 RWLDLYSGTGSVGIEAISRGC---SEVHFVEMDPWVVSNVLIPNLEWTG 203 (299)
Q Consensus 158 ~VLDLfaGSGalgIEAlSrGa---~~V~~VD~n~~Al~~~a~~N~~~~g 203 (299)
++|++|||.|......+.--. -.|+++|-++.|+ +..++|.....
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai-~~vk~~~~~~e 121 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAI-ELVKKSSGYDE 121 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHH-HHHHhccccch
Confidence 799999999999988876432 3799999999998 99999976553
No 270
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=92.32 E-value=1.1 Score=43.12 Aligned_cols=90 Identities=17% Similarity=0.097 Sum_probs=56.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchH---HHHHHHc-C-CCEEEEEeCCHHHHHHHHHHH
Q 022298 124 PKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV---GIEAISR-G-CSEVHFVEMDPWVVSNVLIPN 198 (299)
Q Consensus 124 p~~~~~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGal---gIEAlSr-G-a~~V~~VD~n~~Al~~~a~~N 198 (299)
|.=+-+|-..+.+++..-++.... -.+..++|||||+|.= -++++.+ + ...-+.||+|..++ +.+..+
T Consensus 51 pEYYptr~E~~iL~~~~~~Ia~~i------~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L-~~a~~~ 123 (319)
T TIGR03439 51 PEYYLTNDEIEILKKHSSDIAASI------PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSEL-QRTLAE 123 (319)
T ss_pred CccCChHHHHHHHHHHHHHHHHhc------CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHH-HHHHHh
Confidence 443334555555666555555542 2466899999999964 3344432 1 23589999999998 888888
Q ss_pred HHHhCCCC-cEEEEEcchhhHHH
Q 022298 199 LEWTGFLD-VSSIHTVRVETFLE 220 (299)
Q Consensus 199 ~~~~g~~~-~~~vi~~D~~~~l~ 220 (299)
+..-.+.. .+.-+.+|..+.+.
T Consensus 124 L~~~~~p~l~v~~l~gdy~~~l~ 146 (319)
T TIGR03439 124 LPLGNFSHVRCAGLLGTYDDGLA 146 (319)
T ss_pred hhhccCCCeEEEEEEecHHHHHh
Confidence 87333332 13336777766543
No 271
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=91.70 E-value=0.95 Score=41.66 Aligned_cols=91 Identities=22% Similarity=0.162 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEE
Q 022298 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209 (299)
Q Consensus 130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~ 209 (299)
+|-+.+..++++ ..+.+||.+|-|.|.+.-..-.+...+=+.||-+|..+ +.++.+.= .-.+++.
T Consensus 88 tpiMha~A~ai~------------tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~-krmr~~gw--~ek~nVi 152 (271)
T KOG1709|consen 88 TPIMHALAEAIS------------TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVL-KRMRDWGW--REKENVI 152 (271)
T ss_pred hHHHHHHHHHHh------------hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHH-HHHHhccc--ccccceE
Confidence 666666666664 25889999999999887644445555668889999997 77777642 2234577
Q ss_pred EEEcchhhHHHHHhhhcCCCCCeeEEEEcCCC
Q 022298 210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPPY 241 (299)
Q Consensus 210 vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY 241 (299)
++.+...+.+..+ ..+.||=|+-|- |
T Consensus 153 il~g~WeDvl~~L-----~d~~FDGI~yDT-y 178 (271)
T KOG1709|consen 153 ILEGRWEDVLNTL-----PDKHFDGIYYDT-Y 178 (271)
T ss_pred EEecchHhhhccc-----cccCcceeEeec-h
Confidence 8888888877654 256799999997 5
No 272
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=90.13 E-value=0.23 Score=46.91 Aligned_cols=38 Identities=32% Similarity=0.462 Sum_probs=34.6
Q ss_pred CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHH
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVV 191 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al 191 (299)
..+++|||||||+|--++.+...|+..+.+.|.|.+.+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence 46899999999999999999888988899999998865
No 273
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=89.99 E-value=3.9 Score=37.35 Aligned_cols=76 Identities=17% Similarity=0.194 Sum_probs=53.9
Q ss_pred CCCEEEEECCccc----hHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcc-hhhHHHHHhhhcC
Q 022298 155 RPGRWLDLYSGTG----SVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR-VETFLERAEQFVG 227 (299)
Q Consensus 155 ~~~~VLDLfaGSG----algIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D-~~~~l~~~~~~~~ 227 (299)
....+++.+|+-| ++|+.++++ |. ++++|--+.+.. ...++.+...+..+..+++.++ ..+.+..+
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgG-R~vCIvp~~~~~-~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~----- 113 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGG-RHVCIVPDEQSL-SEYKKALGEAGLSDVVEFVVGEAPEEVMPGL----- 113 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCC-eEEEEcCChhhH-HHHHHHHhhccccccceEEecCCHHHHHhhc-----
Confidence 4567888866533 677776665 44 588888888876 6788888878887767888887 45566443
Q ss_pred CCCCeeEEEEcC
Q 022298 228 KDGPFDYMSVTP 239 (299)
Q Consensus 228 ~~~~fDlI~iDP 239 (299)
...|++++|=
T Consensus 114 --~~iDF~vVDc 123 (218)
T PF07279_consen 114 --KGIDFVVVDC 123 (218)
T ss_pred --cCCCEEEEeC
Confidence 4678888775
No 274
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=89.63 E-value=0.75 Score=47.12 Aligned_cols=79 Identities=16% Similarity=0.163 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCC-CCCCCCCCEEEEECCccchHHHHHH------HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEE
Q 022298 137 KGAAFDILQSAGG-CPASLRPGRWLDLYSGTGSVGIEAI------SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209 (299)
Q Consensus 137 realfn~L~~~~~-~~~~~~~~~VLDLfaGSGalgIEAl------SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~ 209 (299)
-+|++..|..+.. .+. ....+++=+|||-|-++-..+ .|.. ++++||+||.|+ ...+|.+.-..+++++
T Consensus 349 q~Ai~~AL~Drvpd~~a-~~~tVimvlGaGRGPLv~~~lkaa~~~~RkV-klyavEKNPNAi--vtL~~~n~~~W~~~Vt 424 (649)
T KOG0822|consen 349 QQAILKALLDRVPDESA-KTTTVIMVLGAGRGPLVDASLKAAEETDRKV-KLYAVEKNPNAI--VTLQNRNFECWDNRVT 424 (649)
T ss_pred HHHHHHHHHhhCccccc-CceEEEEEecCCCccHHHHHHHHHHHhcCce-EEEEEecCcchh--hhhhhhchhhhcCeeE
Confidence 3566666655421 000 113467889999998875443 2433 699999999998 4455665556678899
Q ss_pred EEEcchhhHH
Q 022298 210 IHTVRVETFL 219 (299)
Q Consensus 210 vi~~D~~~~l 219 (299)
++.+|+.+|-
T Consensus 425 ii~~DMR~w~ 434 (649)
T KOG0822|consen 425 IISSDMRKWN 434 (649)
T ss_pred EEeccccccC
Confidence 9999998875
No 275
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=87.88 E-value=1.1 Score=38.20 Aligned_cols=49 Identities=8% Similarity=-0.035 Sum_probs=35.6
Q ss_pred EEEeCCHHHHHHHHHHHHHHh--CCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEc
Q 022298 182 HFVEMDPWVVSNVLIPNLEWT--GFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVT 238 (299)
Q Consensus 182 ~~VD~n~~Al~~~a~~N~~~~--g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iD 238 (299)
+++|.++.++ +.++++.+.. +..++++++++|+.+.. ...+.||+|++.
T Consensus 1 ~GvD~S~~ML-~~A~~~~~~~~~~~~~~i~~~~~d~~~lp-------~~~~~fD~v~~~ 51 (160)
T PLN02232 1 MGLDFSSEQL-AVAATRQSLKARSCYKCIEWIEGDAIDLP-------FDDCEFDAVTMG 51 (160)
T ss_pred CeEcCCHHHH-HHHHHhhhcccccCCCceEEEEechhhCC-------CCCCCeeEEEec
Confidence 4799999998 9998766532 22345889999987642 234689999974
No 276
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=87.53 E-value=3.2 Score=37.85 Aligned_cols=100 Identities=13% Similarity=-0.011 Sum_probs=65.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCc
Q 022298 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV 207 (299)
Q Consensus 129 ~RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~ 207 (299)
..|--+++..++++-|.... ..++.+||=|||-||+-.-...- -|...+++||.+++...+++ .=++. .++
T Consensus 54 Wnp~RSKLaAaIl~Gl~~~p----i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl-~~a~~---R~N 125 (231)
T COG1889 54 WNPRRSKLAAAILKGLKNFP----IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELL-DVAEK---RPN 125 (231)
T ss_pred eCcchhHHHHHHHcCcccCC----cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHH-HHHHh---CCC
Confidence 57888888888888876431 13689999999999976543322 24445999999999873333 22222 233
Q ss_pred EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP 240 (299)
Q Consensus 208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPP 240 (299)
+-.+-+|+....+... --+..|+||.|=-
T Consensus 126 i~PIL~DA~~P~~Y~~----~Ve~VDviy~DVA 154 (231)
T COG1889 126 IIPILEDARKPEKYRH----LVEKVDVIYQDVA 154 (231)
T ss_pred ceeeecccCCcHHhhh----hcccccEEEEecC
Confidence 5567788876543321 1257999999863
No 277
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=87.53 E-value=3 Score=31.37 Aligned_cols=74 Identities=20% Similarity=0.130 Sum_probs=41.7
Q ss_pred EEEECCccchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhH-HHHHhhhcCCC-CCeeE
Q 022298 159 WLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF-LERAEQFVGKD-GPFDY 234 (299)
Q Consensus 159 VLDLfaGSGalgIEAlSrGa--~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~-l~~~~~~~~~~-~~fDl 234 (299)
++|++||+|... .+..... ..++++|.++.++ ...+.+... .....+.+...|.... +. ... ..||+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~d~ 122 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEML-ALARARAEG-AGLGLVDFVVADALGGVLP------FEDSASFDL 122 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHH-HHHHhhhhh-cCCCceEEEEeccccCCCC------CCCCCceeE
Confidence 999999999865 2222221 3689999999987 664443322 1111145566665431 11 112 36888
Q ss_pred EEEcCCC
Q 022298 235 MSVTPPY 241 (299)
Q Consensus 235 I~iDPPY 241 (299)
+......
T Consensus 123 ~~~~~~~ 129 (257)
T COG0500 123 VISLLVL 129 (257)
T ss_pred Eeeeeeh
Confidence 7554443
No 278
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=87.49 E-value=0.45 Score=48.06 Aligned_cols=81 Identities=21% Similarity=0.173 Sum_probs=58.6
Q ss_pred CCEEEEECCccchHHHHH-HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298 156 PGRWLDLYSGTGSVGIEA-ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (299)
Q Consensus 156 ~~~VLDLfaGSGalgIEA-lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDl 234 (299)
+...|-++=|+|.++.-. .+++-.++++||++|.++ +.+..+.....-. +..++..|..+++.+..+.......||+
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l-~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEML-EVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHh-hccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCcE
Confidence 566777777778777532 356767899999999998 9999987655432 4566778888888766433234568999
Q ss_pred EEEc
Q 022298 235 MSVT 238 (299)
Q Consensus 235 I~iD 238 (299)
++.|
T Consensus 374 l~~d 377 (482)
T KOG2352|consen 374 LMVD 377 (482)
T ss_pred EEEE
Confidence 9977
No 279
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.23 E-value=0.79 Score=40.40 Aligned_cols=80 Identities=16% Similarity=0.079 Sum_probs=45.1
Q ss_pred CCCCEEEEECCccchHH-HHH-HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298 154 LRPGRWLDLYSGTGSVG-IEA-ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalg-IEA-lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~ 231 (299)
+.+.++|+||+|--+++ +.. .+.....|+.-|-|.+++ +..++-...|.... +-.+.+.++...-.+.......
T Consensus 28 ~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~sv-rnv~ki~~~n~~s~---~tsc~vlrw~~~~aqsq~eq~t 103 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESV-RNVEKIRNSNMASS---LTSCCVLRWLIWGAQSQQEQHT 103 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHH-HHHHHHHhcccccc---cceehhhHHHHhhhHHHHhhCc
Confidence 45789999998854443 332 233456799999999998 77766554442211 1122233333221122223458
Q ss_pred eeEEEE
Q 022298 232 FDYMSV 237 (299)
Q Consensus 232 fDlI~i 237 (299)
||+|++
T Consensus 104 FDiIla 109 (201)
T KOG3201|consen 104 FDIILA 109 (201)
T ss_pred ccEEEe
Confidence 998874
No 280
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.29 E-value=3.9 Score=39.67 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=34.8
Q ss_pred CCCEEEEECCcc-chHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 022298 155 RPGRWLDLYSGT-GSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL 205 (299)
Q Consensus 155 ~~~~VLDLfaGS-GalgIEAl-SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~ 205 (299)
.+.+||=+|||. |-+.+-++ ..||.+|+++|.++..+ +.+++ +|..
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rl-e~Ak~----~Ga~ 216 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRL-ELAKK----FGAT 216 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHH-HHHHH----hCCe
Confidence 588999998875 33333333 36999999999999998 88877 6764
No 281
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=85.09 E-value=2.5 Score=35.98 Aligned_cols=59 Identities=19% Similarity=0.145 Sum_probs=41.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCC
Q 022298 180 EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV 244 (299)
Q Consensus 180 ~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~ 244 (299)
+|+++|+.++|+ +.+++.++..+..++++++..+=..+.... . .+++|+++.|-=|--+
T Consensus 1 kVyaFDIQ~~Ai-~~T~~rL~~~~~~~~v~li~~sHe~l~~~i----~-~~~v~~~iFNLGYLPg 59 (140)
T PF06962_consen 1 KVYAFDIQEEAI-ENTRERLEEAGLEDRVTLILDSHENLDEYI----P-EGPVDAAIFNLGYLPG 59 (140)
T ss_dssp EEEEEES-HHHH-HHHHHHHHHTT-GSGEEEEES-GGGGGGT-------S--EEEEEEEESB-CT
T ss_pred CEEEEECHHHHH-HHHHHHHHhcCCCCcEEEEECCHHHHHhhC----c-cCCcCEEEEECCcCCC
Confidence 599999999998 999999999998888998886544433211 1 2489999999877643
No 282
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=84.92 E-value=1.4 Score=41.00 Aligned_cols=46 Identities=35% Similarity=0.236 Sum_probs=33.7
Q ss_pred CCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhC
Q 022298 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG 203 (299)
Q Consensus 156 ~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g 203 (299)
..++|+||+|||-.|+.|+..+...|+.-|.-. .+ ..++.|.+.++
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-~~-~~L~~~~~~~~ 132 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPK-VV-ENLKFNRDKNN 132 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchh-hH-HHHHHhhhhhh
Confidence 457999999999999987775444677767644 44 67777766554
No 283
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=84.84 E-value=0.85 Score=42.41 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=20.1
Q ss_pred EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCC
Q 022298 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT 242 (299)
Q Consensus 208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~ 242 (299)
+++.+.|..+.+... ..=|+||+||||.
T Consensus 156 v~i~~~Df~~~i~~~-------~~~dfvYlDPPY~ 183 (266)
T TIGR00571 156 TTFLCGSFEKILAMV-------DDDSFVYCDPPYL 183 (266)
T ss_pred CEEEECCHHHHHhhc-------CCCCEEEECCCCC
Confidence 567777877776432 3447999999995
No 284
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=82.92 E-value=2.8 Score=34.54 Aligned_cols=51 Identities=24% Similarity=0.212 Sum_probs=31.1
Q ss_pred EECCccc--hHHHHHH-H-cC-CCEEEEEeCCHHHHHHHHHHH--HHHhCCCCcEEEEE
Q 022298 161 DLYSGTG--SVGIEAI-S-RG-CSEVHFVEMDPWVVSNVLIPN--LEWTGFLDVSSIHT 212 (299)
Q Consensus 161 DLfaGSG--algIEAl-S-rG-a~~V~~VD~n~~Al~~~a~~N--~~~~g~~~~~~vi~ 212 (299)
|+||+.| +..+..+ + .+ ..+|+++|-++..+ +.+++| +..++..+.++++.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~-~~l~~~~~~~l~~~~~~~~~~~ 58 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNF-EKLKRNLNLALNDKDGEVEFHP 58 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHH-HHHHHH--HHHTTTSTTGGEEE
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHH-HHHhHHHHHHhcCCCceEEEEE
Confidence 8999999 6555543 2 22 45799999999997 999999 66664433344443
No 285
>PRK10904 DNA adenine methylase; Provisional
Probab=82.35 E-value=1.3 Score=41.45 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=21.8
Q ss_pred EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCC
Q 022298 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT 242 (299)
Q Consensus 208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~ 242 (299)
+++.+.|..+.+... ..=|+|++||||.
T Consensus 158 v~i~~~Df~~~i~~~-------~~~~fvYlDPPY~ 185 (271)
T PRK10904 158 AFFYCESYADSMARA-------DKGSVVYCDPPYA 185 (271)
T ss_pred CEEEECCHHHHHhhc-------CCCcEEEECCCCC
Confidence 678899988887542 3458999999995
No 286
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=80.71 E-value=1.1 Score=42.25 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=28.9
Q ss_pred CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHH
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPW 189 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~ 189 (299)
..++.|.|+|+|||.+|-++-..|. .|++-|+-.-
T Consensus 26 ~s~k~f~DiFaGtGVV~~~fkk~~n-~iiaNDle~y 60 (330)
T COG3392 26 LSGKIFCDIFAGTGVVGRFFKKAGN-KIIANDLEYY 60 (330)
T ss_pred cCCCeeeeeccCccHHHHHHHHhcc-hhhhchHHHH
Confidence 4678999999999999999888876 4888887543
No 287
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=79.98 E-value=1.7 Score=40.59 Aligned_cols=76 Identities=22% Similarity=0.365 Sum_probs=48.0
Q ss_pred CCEEEEECCccchHHH--HHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 156 PGRWLDLYSGTGSVGI--EAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 156 ~~~VLDLfaGSGalgI--EAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
..+||++++|.|.+-- +-+.-.|.-|.++|+|+.|- ++-..|- +-++.....+....+.+|. .-.+|
T Consensus 3 pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvAN-evY~~N~-h~~L~k~~~I~~lt~kefd---------~l~~~ 71 (338)
T KOG0919|consen 3 PLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVAN-EVYAHNY-HSNLVKTRNIQSLTVKEFD---------KLQAN 71 (338)
T ss_pred ceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHH-HHHhcCc-ccchhhccccceeeHhhhh---------hcccc
Confidence 4589999999998753 33334566799999999985 7777772 1111111112222333332 13689
Q ss_pred EEEEcCCCC
Q 022298 234 YMSVTPPYT 242 (299)
Q Consensus 234 lI~iDPPY~ 242 (299)
++.|-||..
T Consensus 72 m~lMSPpCQ 80 (338)
T KOG0919|consen 72 MLLMSPPCQ 80 (338)
T ss_pred eEeeCCCCC
Confidence 999999986
No 288
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=79.68 E-value=2.8 Score=38.34 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=57.7
Q ss_pred CCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHHhC-------CCCcEEEEEcchhhHHHHHhhhcC
Q 022298 156 PGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG-------FLDVSSIHTVRVETFLERAEQFVG 227 (299)
Q Consensus 156 ~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g-------~~~~~~vi~~D~~~~l~~~~~~~~ 227 (299)
..-+.|+|||-|.+-+++.-. .-.-+.+.||--+.. +..++-++.++ +. ++.+.+.++..++.+.- .
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVs-dYVk~RI~ALR~~~a~~~~~-ni~vlr~namk~lpn~f---~ 135 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVS-DYVKERIQALRRTSAEGQYP-NISVLRTNAMKFLPNFF---E 135 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHH-HHHHHHHHHHhccccccccc-cceeeeccchhhccchh---h
Confidence 356899999999999876543 344689999988875 99999998886 33 36678888888876542 1
Q ss_pred CCC--CeeEEEEcCCCCC
Q 022298 228 KDG--PFDYMSVTPPYTA 243 (299)
Q Consensus 228 ~~~--~fDlI~iDPPY~~ 243 (299)
.++ +.=+.|-||=|..
T Consensus 136 kgqLskmff~fpdpHfk~ 153 (249)
T KOG3115|consen 136 KGQLSKMFFLFPDPHFKA 153 (249)
T ss_pred hcccccceeecCChhHhh
Confidence 111 2224456776654
No 289
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=79.33 E-value=4.7 Score=42.19 Aligned_cols=110 Identities=14% Similarity=-0.017 Sum_probs=61.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhcC-C--CC-CCCCCCEEEEECCccchHHHHHHH-------cC------CCEEEEEeCCHH
Q 022298 127 MDVRPMMEVVKGAAFDILQSAG-G--CP-ASLRPGRWLDLYSGTGSVGIEAIS-------RG------CSEVHFVEMDPW 189 (299)
Q Consensus 127 ~~~RPttd~Vrealfn~L~~~~-~--~~-~~~~~~~VLDLfaGSGalgIEAlS-------rG------a~~V~~VD~n~~ 189 (299)
..+..+.+-+.|+..--+.... . .. .....-+|+|+|-|+|.--+.++. ++ .-+.+.+|..|-
T Consensus 25 d~y~s~~~~~~e~~~~f~~~~~l~~r~~~~~~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~ 104 (662)
T PRK01747 25 DVYFSNDNGLEETRYVFLGGNGLPERWAEHPRRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPL 104 (662)
T ss_pred CcccCCCCHHHHhhhhhhcCCCHHHHHhcCCCCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCC
Confidence 3455666666766553332110 0 00 012246899999999976655542 11 137899998774
Q ss_pred HHHHHHHHHHHH-------------------hCC-----C-C--cEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcC--C
Q 022298 190 VVSNVLIPNLEW-------------------TGF-----L-D--VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP--P 240 (299)
Q Consensus 190 Al~~~a~~N~~~-------------------~g~-----~-~--~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDP--P 240 (299)
.. +.+.+-.+. .|+ . + +.+++.+|+.+.+..+ ...||++|+|+ |
T Consensus 105 ~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~l~l~~gd~~~~~~~~------~~~~d~~~lD~FsP 177 (662)
T PRK01747 105 TR-ADLARAHQHWPELAPLAEQLQAQWPLLLPGCHRLLFDDGRVTLDLWFGDANELLPQL------DARADAWFLDGFAP 177 (662)
T ss_pred CH-HHHHHHHhhCcccHHHHHHHHHhCCccCCCceEEEecCCcEEEEEEecCHHHHHHhc------cccccEEEeCCCCC
Confidence 43 223222110 122 1 2 3457889999887654 25699999997 5
Q ss_pred CCC
Q 022298 241 YTA 243 (299)
Q Consensus 241 Y~~ 243 (299)
...
T Consensus 178 ~~n 180 (662)
T PRK01747 178 AKN 180 (662)
T ss_pred ccC
Confidence 443
No 290
>PRK05854 short chain dehydrogenase; Provisional
Probab=79.18 E-value=24 Score=33.04 Aligned_cols=84 Identities=12% Similarity=0.089 Sum_probs=49.1
Q ss_pred CCCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~ 226 (299)
+.+.++|=.|| +|.+|.+.+ .+|+ +|+.+..+.... +-+.+.+....-..++.++..|+.+...- ...+.
T Consensus 12 l~gk~~lITGa-s~GIG~~~a~~La~~G~-~Vil~~R~~~~~-~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 12 LSGKRAVVTGA-SDGLGLGLARRLAAAGA-EVILPVRNRAKG-EAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred cCCCEEEEeCC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHH
Confidence 45667775555 566676644 4687 699999988765 55555554332122467788887543211 11112
Q ss_pred CCCCCeeEEEEcCC
Q 022298 227 GKDGPFDYMSVTPP 240 (299)
Q Consensus 227 ~~~~~fDlI~iDPP 240 (299)
...++.|+++.+.-
T Consensus 89 ~~~~~iD~li~nAG 102 (313)
T PRK05854 89 AEGRPIHLLINNAG 102 (313)
T ss_pred HhCCCccEEEECCc
Confidence 22457899997653
No 291
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=79.13 E-value=4.1 Score=37.97 Aligned_cols=41 Identities=10% Similarity=0.049 Sum_probs=35.6
Q ss_pred CCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 022298 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP 197 (299)
Q Consensus 156 ~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~ 197 (299)
...++|+|||-|.+.-....+|..+.+.+|.+..++ +.++.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~-~s~~~ 113 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMI-KSCRD 113 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHH-HHhhc
Confidence 468999999999999988889999999999999887 65543
No 292
>PRK07102 short chain dehydrogenase; Provisional
Probab=78.96 E-value=16 Score=32.22 Aligned_cols=80 Identities=14% Similarity=0.097 Sum_probs=47.9
Q ss_pred EEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 158 RWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 158 ~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
+++ +-.|+|.+|.+. +++|+ +|++++.++... +.+.+++...+. .+++++.+|+.+.......+......+|
T Consensus 3 ~vl-ItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~-~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~d 78 (243)
T PRK07102 3 KIL-IIGATSDIARACARRYAAAGA-RLYLAARDVERL-ERLADDLRARGA-VAVSTHELDILDTASHAAFLDSLPALPD 78 (243)
T ss_pred EEE-EEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHH-HHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence 455 344677777764 35676 599999998876 555555544332 3577888887654321110111123579
Q ss_pred EEEEcCCC
Q 022298 234 YMSVTPPY 241 (299)
Q Consensus 234 lI~iDPPY 241 (299)
+++.+..+
T Consensus 79 ~vv~~ag~ 86 (243)
T PRK07102 79 IVLIAVGT 86 (243)
T ss_pred EEEECCcC
Confidence 99987654
No 293
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=78.42 E-value=1.5 Score=39.60 Aligned_cols=30 Identities=30% Similarity=0.629 Sum_probs=17.6
Q ss_pred EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~ 243 (299)
+++.+.|....+... ..+-|+|++||||..
T Consensus 160 ~~i~~~d~~~~~~~~------~~~~d~vYlDPPY~~ 189 (260)
T PF02086_consen 160 VEIENRDFDEVIERY------DSPNDFVYLDPPYYS 189 (260)
T ss_dssp EEEEEC-CHGGGTT--------TTE-EEEE--S-TT
T ss_pred ceeEehhHHHHHhhc------cCCCeEEEEcCcccc
Confidence 678888887765321 356789999999987
No 294
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=78.37 E-value=27 Score=31.33 Aligned_cols=97 Identities=20% Similarity=0.139 Sum_probs=54.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCc-cchHHHHHHH-cCCCEEEEEeCC-------------------H
Q 022298 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSG-TGSVGIEAIS-RGCSEVHFVEMD-------------------P 188 (299)
Q Consensus 130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaG-SGalgIEAlS-rGa~~V~~VD~n-------------------~ 188 (299)
+|..+.+.+.++..+.... ...+...+|+=+||| .|+--.+.|. .|..+++.+|.| +
T Consensus 4 ~~~~~~~~~~~~~~~g~~~--q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~ 81 (212)
T PRK08644 4 IPSMEEFEAMLASRHTPKL--LEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMP 81 (212)
T ss_pred cCcHHHHHHHHHhhcCHHH--HHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCCh
Confidence 5667766666665432110 001457788888776 3554444444 588899999999 3
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEcchhhH-HHHHhhhcCCCCCeeEEE
Q 022298 189 WVVSNVLIPNLEWTGFLDVSSIHTVRVETF-LERAEQFVGKDGPFDYMS 236 (299)
Q Consensus 189 ~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~-l~~~~~~~~~~~~fDlI~ 236 (299)
++ +.+.++++.++-.-.++.+...+... .... -..||+|+
T Consensus 82 Ka--~~a~~~l~~lnp~v~v~~~~~~i~~~~~~~~------~~~~DvVI 122 (212)
T PRK08644 82 KV--EALKENLLEINPFVEIEAHNEKIDEDNIEEL------FKDCDIVV 122 (212)
T ss_pred HH--HHHHHHHHHHCCCCEEEEEeeecCHHHHHHH------HcCCCEEE
Confidence 33 46677776665432344444333221 1111 14689888
No 295
>PTZ00357 methyltransferase; Provisional
Probab=78.01 E-value=4.3 Score=43.19 Aligned_cols=62 Identities=13% Similarity=0.011 Sum_probs=42.2
Q ss_pred CEEEEECCccchHHHHHH---Hc-CC-CEEEEEeCCHHHHHHHHHHHHHHh-CC-------CCcEEEEEcchhhHH
Q 022298 157 GRWLDLYSGTGSVGIEAI---SR-GC-SEVHFVEMDPWVVSNVLIPNLEWT-GF-------LDVSSIHTVRVETFL 219 (299)
Q Consensus 157 ~~VLDLfaGSGalgIEAl---Sr-Ga-~~V~~VD~n~~Al~~~a~~N~~~~-g~-------~~~~~vi~~D~~~~l 219 (299)
..|+=+|||=|-+-=.++ +. |. -++++||+|+.++ ..++.+.+.. .. .++++++..|+..|.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA-~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~ 776 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAA-AFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIA 776 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchH-HHHHHHHhcccccccccccCCCeEEEEeCcccccc
Confidence 358999999997765444 32 33 2799999997765 4555554221 22 346899999999884
No 296
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=77.45 E-value=1.1 Score=42.26 Aligned_cols=31 Identities=19% Similarity=0.416 Sum_probs=23.1
Q ss_pred EEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCCeE
Q 022298 209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYE 247 (299)
Q Consensus 209 ~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~~~ 247 (299)
++.+.|+....+. -++|++++||||+.-.|.
T Consensus 189 kv~qeDaN~Likk--------I~~DilYLDpPYN~rqYs 219 (330)
T COG3392 189 KVYQEDANELIKK--------ISGDILYLDPPYNARQYS 219 (330)
T ss_pred HHHHhhHHHHHHh--------cCCCEEEeCCCccccccc
Confidence 4667777776643 367999999999986554
No 297
>PRK07063 short chain dehydrogenase; Provisional
Probab=77.40 E-value=28 Score=30.99 Aligned_cols=84 Identities=12% Similarity=0.028 Sum_probs=49.9
Q ss_pred CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~ 226 (299)
+.++++|=.|+ +|.+|.+. +++|+ +|+.++.+++.+ +.+.+.++..+...++.++.+|+.+.... .....
T Consensus 5 l~~k~vlVtGa-s~gIG~~~a~~l~~~G~-~vv~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 81 (260)
T PRK07063 5 LAGKVALVTGA-AQGIGAAIARAFAREGA-AVALADLDAALA-ERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAE 81 (260)
T ss_pred cCCCEEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 35677886665 45666553 45787 599999998876 66655555422223466788886543211 11111
Q ss_pred CCCCCeeEEEEcCC
Q 022298 227 GKDGPFDYMSVTPP 240 (299)
Q Consensus 227 ~~~~~fDlI~iDPP 240 (299)
...+..|+++.+.-
T Consensus 82 ~~~g~id~li~~ag 95 (260)
T PRK07063 82 EAFGPLDVLVNNAG 95 (260)
T ss_pred HHhCCCcEEEECCC
Confidence 12257899997754
No 298
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=76.69 E-value=5.6 Score=35.54 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=28.4
Q ss_pred CCCEEEEECCccc----hHHHHHHH---cCCC---EEEEEeCCHHHHHHHHHH
Q 022298 155 RPGRWLDLYSGTG----SVGIEAIS---RGCS---EVHFVEMDPWVVSNVLIP 197 (299)
Q Consensus 155 ~~~~VLDLfaGSG----algIEAlS---rGa~---~V~~VD~n~~Al~~~a~~ 197 (299)
..-+|+..+|+|| ++++.+.. .... ++++.|+|+.++ +.+++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L-~~Ar~ 82 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSAL-EKARA 82 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHH-HHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHH-HHHHh
Confidence 3569999999999 55554433 1222 799999999998 87775
No 299
>PRK05867 short chain dehydrogenase; Provisional
Probab=76.45 E-value=23 Score=31.51 Aligned_cols=83 Identities=14% Similarity=0.106 Sum_probs=50.6
Q ss_pred CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~ 226 (299)
+.++++|=.|++ |.+|.+. +.+|+ +|+.++.+.+.+ +.+.+.++..+ .++..+.+|+.+...- .....
T Consensus 7 ~~~k~vlVtGas-~gIG~~ia~~l~~~G~-~V~~~~r~~~~~-~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 81 (253)
T PRK05867 7 LHGKRALITGAS-TGIGKRVALAYVEAGA-QVAIAARHLDAL-EKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVT 81 (253)
T ss_pred CCCCEEEEECCC-chHHHHHHHHHHHCCC-EEEEEcCCHHHH-HHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHH
Confidence 457788877764 4555553 35687 599999998876 66666665544 3466777776543211 01111
Q ss_pred CCCCCeeEEEEcCCC
Q 022298 227 GKDGPFDYMSVTPPY 241 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY 241 (299)
...++.|+++.+.-.
T Consensus 82 ~~~g~id~lv~~ag~ 96 (253)
T PRK05867 82 AELGGIDIAVCNAGI 96 (253)
T ss_pred HHhCCCCEEEECCCC
Confidence 112578999988754
No 300
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=76.34 E-value=2.2 Score=40.32 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=20.7
Q ss_pred EEEEEcchhhHHHHHhhhcCCCCCe-eEEEEcCCCCC
Q 022298 208 SSIHTVRVETFLERAEQFVGKDGPF-DYMSVTPPYTA 243 (299)
Q Consensus 208 ~~vi~~D~~~~l~~~~~~~~~~~~f-DlI~iDPPY~~ 243 (299)
+++.++|..+.+... .+= |+|++||||..
T Consensus 157 ~~i~~~df~~v~~~a-------~~~~dfvY~DPPY~~ 186 (274)
T COG0338 157 ATIENGDFEEVLADA-------DSGDDFVYCDPPYLP 186 (274)
T ss_pred CeEEcCCHHHHHhhc-------cCCCcEEEeCCCCCc
Confidence 567777777766432 334 89999999986
No 301
>PRK08339 short chain dehydrogenase; Provisional
Probab=76.13 E-value=32 Score=31.10 Aligned_cols=81 Identities=10% Similarity=0.023 Sum_probs=48.3
Q ss_pred CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH--H-hhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER--A-EQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~--~-~~~~ 226 (299)
+.++++|=.|+++ .+|.+ ++++|+ +|+.++.++..+ +.+.+.++... ..++.++.+|+.+...- . ...
T Consensus 6 l~~k~~lItGas~-gIG~aia~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~- 80 (263)
T PRK08339 6 LSGKLAFTTASSK-GIGFGVARVLARAGA-DVILLSRNEENL-KKAREKIKSES-NVDVSYIVADLTKREDLERTVKEL- 80 (263)
T ss_pred CCCCEEEEeCCCC-cHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHH-
Confidence 4567777666554 44554 446787 599999998876 66666554331 12466778886643211 1 111
Q ss_pred CCCCCeeEEEEcC
Q 022298 227 GKDGPFDYMSVTP 239 (299)
Q Consensus 227 ~~~~~fDlI~iDP 239 (299)
...+..|+++.+.
T Consensus 81 ~~~g~iD~lv~na 93 (263)
T PRK08339 81 KNIGEPDIFFFST 93 (263)
T ss_pred HhhCCCcEEEECC
Confidence 1125689988775
No 302
>PRK06172 short chain dehydrogenase; Provisional
Probab=75.77 E-value=31 Score=30.51 Aligned_cols=83 Identities=16% Similarity=0.089 Sum_probs=51.6
Q ss_pred CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~ 226 (299)
+.++++|=.|+ +|.+|.+. +.+|+ +|+.++.+++.+ +.+.+.++..+ .++.++.+|+.+...- .....
T Consensus 5 l~~k~ilItGa-s~~iG~~ia~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~ 79 (253)
T PRK06172 5 FSGKVALVTGG-AAGIGRATALAFAREGA-KVVVADRDAAGG-EETVALIREAG--GEALFVACDVTRDAEVKALVEQTI 79 (253)
T ss_pred CCCCEEEEeCC-CchHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHH
Confidence 45678887775 55666654 34676 599999998876 66666665554 3467788887543211 11111
Q ss_pred CCCCCeeEEEEcCCC
Q 022298 227 GKDGPFDYMSVTPPY 241 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY 241 (299)
...++.|+|+.+.-+
T Consensus 80 ~~~g~id~li~~ag~ 94 (253)
T PRK06172 80 AAYGRLDYAFNNAGI 94 (253)
T ss_pred HHhCCCCEEEECCCC
Confidence 112568999987654
No 303
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.06 E-value=3.9 Score=39.63 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=30.9
Q ss_pred CCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC
Q 022298 155 RPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL 205 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~ 205 (299)
++..+.=. |-|++|+.++ .+||+++++||+|++-. +.++ .+|..
T Consensus 192 ~GstvAVf--GLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf-~~ak----~fGaT 239 (375)
T KOG0022|consen 192 PGSTVAVF--GLGGVGLAVAMGAKAAGASRIIGVDINPDKF-EKAK----EFGAT 239 (375)
T ss_pred CCCEEEEE--ecchHHHHHHHhHHhcCcccEEEEecCHHHH-HHHH----hcCcc
Confidence 45555544 4566777654 47999999999999986 6654 36654
No 304
>PRK07062 short chain dehydrogenase; Provisional
Probab=75.05 E-value=31 Score=30.81 Aligned_cols=85 Identities=12% Similarity=-0.037 Sum_probs=48.8
Q ss_pred CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~ 226 (299)
+.++.+|=.||++ .+|.+ ++++|+ +|+.++.+++.+ +.+.+.+....-..++.++..|+.+...- .....
T Consensus 6 l~~k~~lItGas~-giG~~ia~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 82 (265)
T PRK07062 6 LEGRVAVVTGGSS-GIGLATVELLLEAGA-SVAICGRDEERL-ASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVE 82 (265)
T ss_pred cCCCEEEEeCCCc-hHHHHHHHHHHHCCC-eEEEEeCCHHHH-HHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 4577788777554 44544 446787 599999998776 55555443322112466677776554211 11111
Q ss_pred CCCCCeeEEEEcCCC
Q 022298 227 GKDGPFDYMSVTPPY 241 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY 241 (299)
...+..|+++.+.-.
T Consensus 83 ~~~g~id~li~~Ag~ 97 (265)
T PRK07062 83 ARFGGVDMLVNNAGQ 97 (265)
T ss_pred HhcCCCCEEEECCCC
Confidence 123568999877643
No 305
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=74.09 E-value=20 Score=37.33 Aligned_cols=77 Identities=13% Similarity=0.069 Sum_probs=47.6
Q ss_pred CCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCC-------CCcEEEEEcchhhHHHHHhh
Q 022298 156 PGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF-------LDVSSIHTVRVETFLERAEQ 224 (299)
Q Consensus 156 ~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~-------~~~~~vi~~D~~~~l~~~~~ 224 (299)
+.++| +..|+|.+|... +.+|+ +|++++.+...+ +.+.+++...++ ..+++++.+|+.+......
T Consensus 80 gKvVL-VTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl-~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~- 155 (576)
T PLN03209 80 EDLAF-VAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRA-ESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP- 155 (576)
T ss_pred CCEEE-EECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHH-HHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH-
Confidence 44444 566678788664 35676 699999998876 555555543221 1347788899876432211
Q ss_pred hcCCCCCeeEEEEcC
Q 022298 225 FVGKDGPFDYMSVTP 239 (299)
Q Consensus 225 ~~~~~~~fDlI~iDP 239 (299)
.-+..|+||.+-
T Consensus 156 ---aLggiDiVVn~A 167 (576)
T PLN03209 156 ---ALGNASVVICCI 167 (576)
T ss_pred ---HhcCCCEEEEcc
Confidence 124689988775
No 306
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=73.65 E-value=11 Score=35.40 Aligned_cols=44 Identities=25% Similarity=0.194 Sum_probs=36.1
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHh
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~ 202 (299)
...+||-+|||.|-++.|.+.+|. .|.+.|.|--++ +-.|.-.+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Ml---l~s~fiLn 99 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFML---LASNFILN 99 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHH---HHHHHHHc
Confidence 467999999999999999999998 599999998775 44454434
No 307
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=73.60 E-value=5.3 Score=38.86 Aligned_cols=42 Identities=21% Similarity=0.184 Sum_probs=34.8
Q ss_pred CEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH
Q 022298 157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200 (299)
Q Consensus 157 ~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~ 200 (299)
...+|+|+|.|.+.=..++ -..+|-++|.+...+ -....++.
T Consensus 179 ~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v-~~~a~~~~ 220 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFV-LAAAPYLA 220 (342)
T ss_pred ceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHH-Hhhhhhhc
Confidence 5789999999999999999 566799999998877 55556654
No 308
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=73.59 E-value=6.5 Score=36.75 Aligned_cols=37 Identities=27% Similarity=0.468 Sum_probs=29.0
Q ss_pred CCCEEEEEC-CccchHHHHHHHc-CCCEEEEEeCCHHHH
Q 022298 155 RPGRWLDLY-SGTGSVGIEAISR-GCSEVHFVEMDPWVV 191 (299)
Q Consensus 155 ~~~~VLDLf-aGSGalgIEAlSr-Ga~~V~~VD~n~~Al 191 (299)
...+|+=+| .|.|++.+|||.| |..+++.||.|.-.+
T Consensus 29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~v 67 (263)
T COG1179 29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCV 67 (263)
T ss_pred hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccc
Confidence 345665555 4789999999987 888999999987554
No 309
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=73.49 E-value=9 Score=39.12 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.2
Q ss_pred EEEEECCccchHHHHHHHcCCC
Q 022298 158 RWLDLYSGTGSVGIEAISRGCS 179 (299)
Q Consensus 158 ~VLDLfaGSGalgIEAlSrGa~ 179 (299)
.+||+|||+|++|-.+++|+..
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~V~ 141 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERNVT 141 (506)
T ss_pred EEEeccceeehhHHHHhhCCce
Confidence 6799999999999999999874
No 310
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=73.42 E-value=20 Score=34.63 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=24.7
Q ss_pred CCCCEEEEECCc-cchHHHHHHH-cCCCEEEEEeCCH
Q 022298 154 LRPGRWLDLYSG-TGSVGIEAIS-RGCSEVHFVEMDP 188 (299)
Q Consensus 154 ~~~~~VLDLfaG-SGalgIEAlS-rGa~~V~~VD~n~ 188 (299)
+.+.+||=+||| .|+...+.|. .|..+++.||.|.
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 457889988876 3444444444 5888999999984
No 311
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=73.37 E-value=24 Score=28.94 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=49.5
Q ss_pred ECCccchHHHHHH----HcCCCEEEEEeCC--HHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH---HHhhhcCCCCCe
Q 022298 162 LYSGTGSVGIEAI----SRGCSEVHFVEMD--PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFVGKDGPF 232 (299)
Q Consensus 162 LfaGSGalgIEAl----SrGa~~V~~VD~n--~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~---~~~~~~~~~~~f 232 (299)
+..|+|.+|.+.+ ++|+..|+.+..+ .... +.+...++..+ .++.+++.|+.+.-. ............
T Consensus 5 ItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~-~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~l 81 (167)
T PF00106_consen 5 ITGASSGIGRALARALARRGARVVILTSRSEDSEGA-QELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKRFGPL 81 (167)
T ss_dssp EETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHH-HHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHHHSSE
T ss_pred EECCCCHHHHHHHHHHHhcCceEEEEeeeccccccc-ccccccccccc--cccccccccccccccccccccccccccccc
Confidence 4556777887754 5688889999998 4444 45555566555 458888888653311 001111123689
Q ss_pred eEEEEcCCCCC
Q 022298 233 DYMSVTPPYTA 243 (299)
Q Consensus 233 DlI~iDPPY~~ 243 (299)
|++|.+.....
T Consensus 82 d~li~~ag~~~ 92 (167)
T PF00106_consen 82 DILINNAGIFS 92 (167)
T ss_dssp SEEEEECSCTT
T ss_pred ccccccccccc
Confidence 99998876554
No 312
>PRK06914 short chain dehydrogenase; Provisional
Probab=73.03 E-value=39 Score=30.42 Aligned_cols=82 Identities=11% Similarity=0.063 Sum_probs=49.1
Q ss_pred CEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH--HhhhcCCCC
Q 022298 157 GRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER--AEQFVGKDG 230 (299)
Q Consensus 157 ~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~--~~~~~~~~~ 230 (299)
.++|=.| |+|.+|... +.+|+ +|++++.+++.+ +.+.+.+...+...++.++.+|+.+.... ........+
T Consensus 4 k~~lItG-asg~iG~~la~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 80 (280)
T PRK06914 4 KIAIVTG-ASSGFGLLTTLELAKKGY-LVIATMRNPEKQ-ENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIG 80 (280)
T ss_pred CEEEEEC-CCchHHHHHHHHHHhCCC-EEEEEeCCHHHH-HHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcC
Confidence 4555444 566666654 45687 599999988876 55555555444444577888887654211 111111225
Q ss_pred CeeEEEEcCCC
Q 022298 231 PFDYMSVTPPY 241 (299)
Q Consensus 231 ~fDlI~iDPPY 241 (299)
+.|.|+.++-+
T Consensus 81 ~id~vv~~ag~ 91 (280)
T PRK06914 81 RIDLLVNNAGY 91 (280)
T ss_pred CeeEEEECCcc
Confidence 68999988754
No 313
>PRK09242 tropinone reductase; Provisional
Probab=72.43 E-value=42 Score=29.82 Aligned_cols=85 Identities=12% Similarity=-0.049 Sum_probs=51.8
Q ss_pred CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~ 226 (299)
+.++++|=.|+ +|.+|.+. +++|+ +|++++.+.+.+ +.+.+++....-..++.++.+|+.+.... .....
T Consensus 7 ~~~k~~lItGa-~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (257)
T PRK09242 7 LDGQTALITGA-SKGIGLAIAREFLGLGA-DVLIVARDADAL-AQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVE 83 (257)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 45778887766 44555543 45687 599999998876 66767765542123466778887543211 00011
Q ss_pred CCCCCeeEEEEcCCC
Q 022298 227 GKDGPFDYMSVTPPY 241 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY 241 (299)
...++.|+|+...-+
T Consensus 84 ~~~g~id~li~~ag~ 98 (257)
T PRK09242 84 DHWDGLHILVNNAGG 98 (257)
T ss_pred HHcCCCCEEEECCCC
Confidence 123578999988765
No 314
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=72.28 E-value=12 Score=36.06 Aligned_cols=80 Identities=23% Similarity=0.275 Sum_probs=61.2
Q ss_pred CCCCEEEEECCccchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHH--hCCC-CcEEEEEcchhhHHHHHhhhcCCC
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEW--TGFL-DVSSIHTVRVETFLERAEQFVGKD 229 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSr-Ga~~V~~VD~n~~Al~~~a~~N~~~--~g~~-~~~~vi~~D~~~~l~~~~~~~~~~ 229 (299)
.+.++||=+|.|-|.+--|-+.. -...++.+|++...+ +.-++=+.. +|++ .++.++.||...|++... .
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vi-e~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~-----~ 193 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVI-ESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK-----E 193 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHH-HHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc-----c
Confidence 35789999999999998876543 345699999999887 777765543 3554 357888999999997652 5
Q ss_pred CCeeEEEEcC
Q 022298 230 GPFDYMSVTP 239 (299)
Q Consensus 230 ~~fDlI~iDP 239 (299)
++||+|+.|-
T Consensus 194 ~~~dVii~ds 203 (337)
T KOG1562|consen 194 NPFDVIITDS 203 (337)
T ss_pred CCceEEEEec
Confidence 7899999764
No 315
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=71.98 E-value=21 Score=32.71 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=26.6
Q ss_pred CCCEEEEECCc-cchHHHHHHHc-CCCEEEEEeCCH
Q 022298 155 RPGRWLDLYSG-TGSVGIEAISR-GCSEVHFVEMDP 188 (299)
Q Consensus 155 ~~~~VLDLfaG-SGalgIEAlSr-Ga~~V~~VD~n~ 188 (299)
...+|+=+||| .|+...++|.| |..+++.+|.|.
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 46788888775 77777777765 888999999774
No 316
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=71.95 E-value=6.8 Score=38.78 Aligned_cols=84 Identities=15% Similarity=0.061 Sum_probs=60.0
Q ss_pred CCCCEEEEECCccchHHHHHH--HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298 154 LRPGRWLDLYSGTGSVGIEAI--SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAl--SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~ 231 (299)
..+..|+|.||-.|.=.+-.+ -+.-.++++.|.+++-+ +..++-++..|... ++...+|..... .. ..-..
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~-~tl~~~l~~ag~~~-~~~~~~df~~t~-~~----~~~~~ 284 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRA-ATLRKLLKIAGVSI-VESVEGDFLNTA-TP----EKFRD 284 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHH-HHHHHHHHHcCCCc-cccccccccCCC-Cc----ccccc
Confidence 357899999999997665544 34445699999999998 89999888888754 555677755421 11 01134
Q ss_pred eeEEEEcCCCCCC
Q 022298 232 FDYMSVTPPYTAV 244 (299)
Q Consensus 232 fDlI~iDPPY~~~ 244 (299)
.-.|++||+....
T Consensus 285 v~~iL~DpscSgS 297 (413)
T KOG2360|consen 285 VTYILVDPSCSGS 297 (413)
T ss_pred eeEEEeCCCCCCC
Confidence 5689999998763
No 317
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=71.90 E-value=12 Score=35.67 Aligned_cols=78 Identities=13% Similarity=-0.050 Sum_probs=42.3
Q ss_pred CCccchHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcE----EEEEcchhhHHHHHhhhcCCCCCeeE
Q 022298 163 YSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS----SIHTVRVETFLERAEQFVGKDGPFDY 234 (299)
Q Consensus 163 faGSGalgIEAlS----rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~----~vi~~D~~~~l~~~~~~~~~~~~fDl 234 (299)
-.|+|++|-|... .+..+++.+|.|+..+ -.+++.++...-..++ ..+.+|+.+...... . -...++|+
T Consensus 4 TGa~GSIGseL~rql~~~~p~~lil~d~~E~~l-~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~-~-~~~~~pdi 80 (293)
T PF02719_consen 4 TGAGGSIGSELVRQLLRYGPKKLILFDRDENKL-YELERELRSRFPDPKVRFEIVPVIGDVRDKERLNR-I-FEEYKPDI 80 (293)
T ss_dssp ETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHH-HHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHH-H-TT--T-SE
T ss_pred EccccHHHHHHHHHHHhcCCCeEEEeCCChhHH-HHHHHHHhhcccccCcccccCceeecccCHHHHHH-H-HhhcCCCE
Confidence 3689999998764 4677899999999998 6777766432211223 345688876543221 1 12347999
Q ss_pred EEEcCCCCC
Q 022298 235 MSVTPPYTA 243 (299)
Q Consensus 235 I~iDPPY~~ 243 (299)
||-=--|..
T Consensus 81 VfHaAA~Kh 89 (293)
T PF02719_consen 81 VFHAAALKH 89 (293)
T ss_dssp EEE------
T ss_pred EEEChhcCC
Confidence 997666654
No 318
>PRK06125 short chain dehydrogenase; Provisional
Probab=71.45 E-value=42 Score=29.89 Aligned_cols=82 Identities=21% Similarity=0.274 Sum_probs=49.1
Q ss_pred CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCC
Q 022298 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~ 229 (299)
+.++++|=.|+ +|.+|.+. +++|+ +|++++.+++.. +.+.+.++... ..++.++..|+.+... ...+....
T Consensus 5 ~~~k~vlItG~-~~giG~~ia~~l~~~G~-~V~~~~r~~~~~-~~~~~~l~~~~-~~~~~~~~~D~~~~~~-~~~~~~~~ 79 (259)
T PRK06125 5 LAGKRVLITGA-SKGIGAAAAEAFAAEGC-HLHLVARDADAL-EALAADLRAAH-GVDVAVHALDLSSPEA-REQLAAEA 79 (259)
T ss_pred CCCCEEEEeCC-CchHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHhhc-CCceEEEEecCCCHHH-HHHHHHHh
Confidence 35666666664 55667653 45788 799999998876 55555554432 1246677777754321 11111112
Q ss_pred CCeeEEEEcCC
Q 022298 230 GPFDYMSVTPP 240 (299)
Q Consensus 230 ~~fDlI~iDPP 240 (299)
++.|+++.++-
T Consensus 80 g~id~lv~~ag 90 (259)
T PRK06125 80 GDIDILVNNAG 90 (259)
T ss_pred CCCCEEEECCC
Confidence 57899998764
No 319
>PRK07904 short chain dehydrogenase; Provisional
Probab=71.24 E-value=33 Score=30.85 Aligned_cols=82 Identities=12% Similarity=0.079 Sum_probs=47.3
Q ss_pred CCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHH-HHHHHHHHHHHhCCCCcEEEEEcchhhHHH---HHhhhcC
Q 022298 156 PGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWV-VSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFVG 227 (299)
Q Consensus 156 ~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~A-l~~~a~~N~~~~g~~~~~~vi~~D~~~~l~---~~~~~~~ 227 (299)
+.++|=.|| +|.+|.+.+ ++|..+|+.++.++.. + +.+.+.++..+. .+++++++|+.+... .......
T Consensus 8 ~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~-~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 8 PQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRR-DAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhH-HHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHHHHh
Confidence 456666665 566676543 4554479999988764 4 444455555442 247788888754321 1111111
Q ss_pred CCCCeeEEEEcCCC
Q 022298 228 KDGPFDYMSVTPPY 241 (299)
Q Consensus 228 ~~~~fDlI~iDPPY 241 (299)
.+..|+++.+-..
T Consensus 85 -~g~id~li~~ag~ 97 (253)
T PRK07904 85 -GGDVDVAIVAFGL 97 (253)
T ss_pred -cCCCCEEEEeeec
Confidence 2578998876544
No 320
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=71.07 E-value=4.6 Score=37.61 Aligned_cols=70 Identities=13% Similarity=0.044 Sum_probs=42.5
Q ss_pred CEEEEECCccchHHHHHHH--------cCCC--EEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhc
Q 022298 157 GRWLDLYSGTGSVGIEAIS--------RGCS--EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226 (299)
Q Consensus 157 ~~VLDLfaGSGalgIEAlS--------rGa~--~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~ 226 (299)
.+++||||..|+.+--+.. .|.. .+++||+.+-|= +.+ +.-+++|+...-.....+.
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP------------I~G-V~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP------------IEG-VIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc------------cCc-eEEeecccCCHhHHHHHHH
Confidence 5899999999999965432 1222 399999987542 222 4456677643321111010
Q ss_pred -CCCCCeeEEEEcC
Q 022298 227 -GKDGPFDYMSVTP 239 (299)
Q Consensus 227 -~~~~~fDlI~iDP 239 (299)
-.+++.|+|++|=
T Consensus 110 hfggekAdlVvcDG 123 (294)
T KOG1099|consen 110 HFGGEKADLVVCDG 123 (294)
T ss_pred HhCCCCccEEEeCC
Confidence 1246889999984
No 321
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=69.84 E-value=2.8 Score=36.44 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=9.5
Q ss_pred eeEEEEcCCCCCCCe
Q 022298 232 FDYMSVTPPYTAVDY 246 (299)
Q Consensus 232 fDlI~iDPPY~~~~~ 246 (299)
.|+|++||||+....
T Consensus 1 VdliitDPPY~~~~~ 15 (231)
T PF01555_consen 1 VDLIITDPPYNIGKD 15 (231)
T ss_dssp EEEEEE---TSSSCS
T ss_pred CCEEEECCCCCCCCC
Confidence 489999999997544
No 322
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=69.31 E-value=15 Score=33.85 Aligned_cols=69 Identities=23% Similarity=0.305 Sum_probs=36.3
Q ss_pred HHHHHHHcCCCEEEEEeCCHHHH-HHHHHHHHHHhC-CCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298 169 VGIEAISRGCSEVHFVEMDPWVV-SNVLIPNLEWTG-FLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP 240 (299)
Q Consensus 169 lgIEAlSrGa~~V~~VD~n~~Al-~~~a~~N~~~~g-~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPP 240 (299)
++.+++.+|. +|..+|-||.-- .+| ++|....+ +.+.+.+...+=...+.....-. ....||+|++|-+
T Consensus 22 LAs~la~~G~-~V~lIDaDpn~pl~~W-~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a-~~~~~d~VlvDle 92 (231)
T PF07015_consen 22 LASELAARGA-RVALIDADPNQPLAKW-AENAQRPGAWPDRIEVYEADELTILEDAYEAA-EASGFDFVLVDLE 92 (231)
T ss_pred HHHHHHHCCC-eEEEEeCCCCCcHHHH-HHhccccCCCCCCeeEEeccchhhHHHHHHHH-HhcCCCEEEEeCC
Confidence 3344556786 599999887632 133 33443333 34456666543222222211000 1235999999996
No 323
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=69.27 E-value=37 Score=31.74 Aligned_cols=59 Identities=12% Similarity=0.169 Sum_probs=32.8
Q ss_pred HHc-CCCEEEEEeCCHH---HHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298 174 ISR-GCSEVHFVEMDPW---VVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP 240 (299)
Q Consensus 174 lSr-Ga~~V~~VD~n~~---Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPP 240 (299)
..+ |..+|..|+.|+. +. +.++...+..++. +... .+..++...... ...+|+|++|-|
T Consensus 219 ~~~~g~~~V~li~~D~~r~~a~-eql~~~~~~~~~p--~~~~-~~~~~l~~~l~~----~~~~d~vliDt~ 281 (282)
T TIGR03499 219 VLEHGNKKVALITTDTYRIGAV-EQLKTYAKILGVP--VKVA-RDPKELRKALDR----LRDKDLILIDTA 281 (282)
T ss_pred HHHcCCCeEEEEECCccchhHH-HHHHHHHHHhCCc--eecc-CCHHHHHHHHHH----ccCCCEEEEeCC
Confidence 344 5467999999884 44 5566666666653 2222 222222222211 246899999975
No 324
>PRK06139 short chain dehydrogenase; Provisional
Probab=69.27 E-value=49 Score=31.51 Aligned_cols=83 Identities=12% Similarity=0.041 Sum_probs=51.3
Q ss_pred CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH--HH-hhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--RA-EQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~--~~-~~~~ 226 (299)
+.+.++|=.|| ||.+|.+. +.+|+ +|+.++.+++.+ +.+.++++..+. ++.++..|+.+... .+ ....
T Consensus 5 l~~k~vlITGA-s~GIG~aia~~la~~G~-~Vvl~~R~~~~l-~~~~~~~~~~g~--~~~~~~~Dv~d~~~v~~~~~~~~ 79 (330)
T PRK06139 5 LHGAVVVITGA-SSGIGQATAEAFARRGA-RLVLAARDEEAL-QAVAEECRALGA--EVLVVPTDVTDADQVKALATQAA 79 (330)
T ss_pred CCCCEEEEcCC-CCHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHH
Confidence 35667775554 56667654 45787 599999999887 777777766653 35667777653221 11 1111
Q ss_pred CCCCCeeEEEEcCCC
Q 022298 227 GKDGPFDYMSVTPPY 241 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY 241 (299)
...+.+|++|.+.-+
T Consensus 80 ~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 80 SFGGRIDVWVNNVGV 94 (330)
T ss_pred HhcCCCCEEEECCCc
Confidence 112578999987654
No 325
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=69.08 E-value=25 Score=34.67 Aligned_cols=63 Identities=16% Similarity=0.238 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHH---c------CCCEEEEEeCCHHHHHHHHHHHHHHh
Q 022298 135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS---R------GCSEVHFVEMDPWVVSNVLIPNLEWT 202 (299)
Q Consensus 135 ~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlS---r------Ga~~V~~VD~n~~Al~~~a~~N~~~~ 202 (299)
.+.+.+.+.++..+. ...-.++++|+|+|.+.--.|+ + .+.++..||.|++-. +.=+++++..
T Consensus 61 lla~~~~~~wq~~g~----p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~-~~Qk~~L~~~ 132 (370)
T COG1565 61 LLAEQFLQLWQELGR----PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELR-ARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHHHHhcC----CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHH-HHHHHHHhcc
Confidence 477777777776421 1245799999999999876653 2 256799999999864 5555555544
No 326
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=68.84 E-value=2.8 Score=33.45 Aligned_cols=14 Identities=36% Similarity=0.764 Sum_probs=12.6
Q ss_pred CeeEEEEcCCCCCC
Q 022298 231 PFDYMSVTPPYTAV 244 (299)
Q Consensus 231 ~fDlI~iDPPY~~~ 244 (299)
+||+|+-||||...
T Consensus 2 kFD~VIGNPPY~~~ 15 (106)
T PF07669_consen 2 KFDVVIGNPPYIKI 15 (106)
T ss_pred CcCEEEECCCChhh
Confidence 59999999999874
No 327
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=68.77 E-value=42 Score=31.54 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=27.3
Q ss_pred CCCCEEEEECCc-cchHHHHHHHc-CCCEEEEEeCCH
Q 022298 154 LRPGRWLDLYSG-TGSVGIEAISR-GCSEVHFVEMDP 188 (299)
Q Consensus 154 ~~~~~VLDLfaG-SGalgIEAlSr-Ga~~V~~VD~n~ 188 (299)
+.+.+|+=+||| .|+...++|.| |..+++.+|.|.
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 456788888777 67777887765 778999999873
No 328
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=68.71 E-value=59 Score=28.76 Aligned_cols=83 Identities=13% Similarity=0.081 Sum_probs=50.6
Q ss_pred CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~ 226 (299)
+++.++|=.|+ +|.+|... +.+|+ +|+.++.+++.+ +.+.+.++..+ .++.++.+|+.+.... .....
T Consensus 9 ~~~k~ilItGa-s~~IG~~la~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (256)
T PRK06124 9 LAGQVALVTGS-ARGLGFEIARALAGAGA-HVLVNGRNAATL-EAAVAALRAAG--GAAEALAFDIADEEAVAAAFARID 83 (256)
T ss_pred CCCCEEEEECC-CchHHHHHHHHHHHcCC-eEEEEeCCHHHH-HHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHH
Confidence 46788887664 56666553 45687 699999998776 66666665544 2366778776543211 11111
Q ss_pred CCCCCeeEEEEcCCC
Q 022298 227 GKDGPFDYMSVTPPY 241 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY 241 (299)
...++.|.++.+.-+
T Consensus 84 ~~~~~id~vi~~ag~ 98 (256)
T PRK06124 84 AEHGRLDILVNNVGA 98 (256)
T ss_pred HhcCCCCEEEECCCC
Confidence 112468999977654
No 329
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=68.51 E-value=10 Score=37.38 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=34.0
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~ 200 (299)
++.+||-+ ++.|.-.+..+..+.++|++||+||.-. .+++--+.
T Consensus 35 ~~d~vl~I-tSaG~N~L~yL~~~P~~I~aVDlNp~Q~-aLleLKlA 78 (380)
T PF11899_consen 35 PDDRVLTI-TSAGCNALDYLLAGPKRIHAVDLNPAQN-ALLELKLA 78 (380)
T ss_pred CCCeEEEE-ccCCchHHHHHhcCCceEEEEeCCHHHH-HHHHHHHH
Confidence 56788888 5567778888999989999999999865 56554433
No 330
>PRK08862 short chain dehydrogenase; Provisional
Probab=68.21 E-value=46 Score=29.61 Aligned_cols=82 Identities=6% Similarity=-0.104 Sum_probs=48.2
Q ss_pred CCCCEEEEECCccch---HHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH---HHhhhcC
Q 022298 154 LRPGRWLDLYSGTGS---VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFVG 227 (299)
Q Consensus 154 ~~~~~VLDLfaGSGa---lgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~---~~~~~~~ 227 (299)
+.++++|=.|+++|. ++.+++.+|+ +|+.++.++..+ +-+.+.++..+. ....+..|+.+... ......+
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l-~~~~~~i~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~ 78 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSAL-KDTYEQCSALTD--NVYSFQLKDFSQESIRHLFDAIEQ 78 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHH-HHHHHHHHhcCC--CeEEEEccCCCHHHHHHHHHHHHH
Confidence 456788877777652 3444556787 599999998886 655555555442 24455566443211 1111111
Q ss_pred CCC-CeeEEEEcC
Q 022298 228 KDG-PFDYMSVTP 239 (299)
Q Consensus 228 ~~~-~fDlI~iDP 239 (299)
..+ ..|+++.+.
T Consensus 79 ~~g~~iD~li~na 91 (227)
T PRK08862 79 QFNRAPDVLVNNW 91 (227)
T ss_pred HhCCCCCEEEECC
Confidence 124 799999886
No 331
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=67.82 E-value=32 Score=30.48 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=23.4
Q ss_pred CCCCEEEEECCc-cchHHHHHH-HcCCCEEEEEeCC
Q 022298 154 LRPGRWLDLYSG-TGSVGIEAI-SRGCSEVHFVEMD 187 (299)
Q Consensus 154 ~~~~~VLDLfaG-SGalgIEAl-SrGa~~V~~VD~n 187 (299)
+...+||=+||| .|+.-...| ..|..+++.+|.|
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 457788888766 344444434 3588899999988
No 332
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=67.55 E-value=10 Score=35.25 Aligned_cols=32 Identities=9% Similarity=0.180 Sum_probs=26.0
Q ss_pred CEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHH
Q 022298 157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVV 191 (299)
Q Consensus 157 ~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al 191 (299)
.+.+|+|||+|++.+.. ....++.-|+|+..+
T Consensus 27 ~~yvEPF~Gggsv~l~~---~~~~~~lND~n~~Li 58 (266)
T TIGR00571 27 NCLVEPFVGGGAVFFNL---NPKRYLLNDINEDLI 58 (266)
T ss_pred CEEEEecCCcchhheee---cCcEEEEecCCHHHH
Confidence 58999999999999853 234588899999865
No 333
>PRK06949 short chain dehydrogenase; Provisional
Probab=67.39 E-value=66 Score=28.36 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=50.0
Q ss_pred CCCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHH---HHHhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL---ERAEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l---~~~~~~~ 226 (299)
..+.++|=.| |+|.+|..++ +.|+ +|+.++.+++.+ +.+...++..+ .++.++.+|+.+.. .......
T Consensus 7 ~~~k~ilItG-asg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~-~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 81 (258)
T PRK06949 7 LEGKVALVTG-ASSGLGARFAQVLAQAGA-KVVLASRRVERL-KELRAEIEAEG--GAAHVVSLDVTDYQSIKAAVAHAE 81 (258)
T ss_pred CCCCEEEEEC-CCcHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHH
Confidence 4567777766 5666666543 4677 699999998876 66666655433 23667777764321 1111111
Q ss_pred CCCCCeeEEEEcCCC
Q 022298 227 GKDGPFDYMSVTPPY 241 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY 241 (299)
...+..|+|+.+.-.
T Consensus 82 ~~~~~~d~li~~ag~ 96 (258)
T PRK06949 82 TEAGTIDILVNNSGV 96 (258)
T ss_pred HhcCCCCEEEECCCC
Confidence 123568999876643
No 334
>PRK07035 short chain dehydrogenase; Provisional
Probab=67.29 E-value=73 Score=28.08 Aligned_cols=83 Identities=10% Similarity=0.042 Sum_probs=47.9
Q ss_pred CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~ 226 (299)
+.++++|=.|+ +|.+|.+ ++++|+ +|+.++.+...+ +.+.+.+...+ .+..++..|+.+.... .....
T Consensus 6 l~~k~vlItGa-s~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 80 (252)
T PRK07035 6 LTGKIALVTGA-SRGIGEAIAKLLAQQGA-HVIVSSRKLDGC-QAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIR 80 (252)
T ss_pred cCCCEEEEECC-CcHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHH
Confidence 34566666654 4555655 345687 699999998776 66666555443 2355677776443211 11111
Q ss_pred CCCCCeeEEEEcCCC
Q 022298 227 GKDGPFDYMSVTPPY 241 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY 241 (299)
...++.|+++.+..+
T Consensus 81 ~~~~~id~li~~ag~ 95 (252)
T PRK07035 81 ERHGRLDILVNNAAA 95 (252)
T ss_pred HHcCCCCEEEECCCc
Confidence 112468999876654
No 335
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=67.10 E-value=35 Score=30.73 Aligned_cols=77 Identities=18% Similarity=0.120 Sum_probs=42.2
Q ss_pred CCCCEEEEECCc-cchHHHHHHH-cCCCEEEEEeCC-------------------HHHHHHHHHHHHHHhCCCCcEEEEE
Q 022298 154 LRPGRWLDLYSG-TGSVGIEAIS-RGCSEVHFVEMD-------------------PWVVSNVLIPNLEWTGFLDVSSIHT 212 (299)
Q Consensus 154 ~~~~~VLDLfaG-SGalgIEAlS-rGa~~V~~VD~n-------------------~~Al~~~a~~N~~~~g~~~~~~vi~ 212 (299)
+...+|+=+||| .|+--+..|. .|..+++.+|-| ..-+ +.+.++++..+-.-+++.+.
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka-~~~~~~l~~~np~~~i~~~~ 97 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKA-EAAAERLRAINPDVEIEAYN 97 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHH-HHHHHHHHHhCCCCEEEEec
Confidence 346788888766 4444444444 488889998543 3333 56667776665322344444
Q ss_pred cchhh-HHHHHhhhcCCCCCeeEEEE
Q 022298 213 VRVET-FLERAEQFVGKDGPFDYMSV 237 (299)
Q Consensus 213 ~D~~~-~l~~~~~~~~~~~~fDlI~i 237 (299)
.++.. .+... -..+|+|+.
T Consensus 98 ~~i~~~~~~~~------~~~~DvVi~ 117 (228)
T cd00757 98 ERLDAENAEEL------IAGYDLVLD 117 (228)
T ss_pred ceeCHHHHHHH------HhCCCEEEE
Confidence 33311 11111 145899883
No 336
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=66.82 E-value=12 Score=35.58 Aligned_cols=42 Identities=19% Similarity=0.166 Sum_probs=31.9
Q ss_pred CCEEEEECCccc----hHHHHHHHc-C----CCEEEEEeCCHHHHHHHHHHH
Q 022298 156 PGRWLDLYSGTG----SVGIEAISR-G----CSEVHFVEMDPWVVSNVLIPN 198 (299)
Q Consensus 156 ~~~VLDLfaGSG----algIEAlSr-G----a~~V~~VD~n~~Al~~~a~~N 198 (299)
..+|+..+|.|| ++++.+... + .-+|++.|+|+.++ +.+++.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL-~~Ar~G 166 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVL-EKARSG 166 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHH-HHHHhC
Confidence 469999999999 455544332 1 23699999999998 888876
No 337
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.47 E-value=2.6 Score=37.60 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=41.1
Q ss_pred CCCEEEEECCccchH--HHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298 155 RPGRWLDLYSGTGSV--GIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (299)
Q Consensus 155 ~~~~VLDLfaGSGal--gIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f 232 (299)
++.++--+-|-|=.+ -..-..++..+|+..|.|.+- +. .| -+++.-|....+.....+ ...|
T Consensus 73 e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDkRF--e~-------yg----~eFvfYDyN~p~dlp~~l---k~~f 136 (217)
T KOG3350|consen 73 EGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDKRF--EL-------YG----TEFVFYDYNCPLDLPDEL---KAHF 136 (217)
T ss_pred cCceEEEEeCchHHhhhhhhhccCCceeEEEEEehhhH--Hh-------cc----ceeEEeccCCCCCCHHHH---Hhcc
Confidence 467777666655221 111122456789999998863 22 22 123444433332222111 2579
Q ss_pred eEEEEcCCCCCC
Q 022298 233 DYMSVTPPYTAV 244 (299)
Q Consensus 233 DlI~iDPPY~~~ 244 (299)
|+|++||||-..
T Consensus 137 diivaDPPfL~~ 148 (217)
T KOG3350|consen 137 DIIVADPPFLSE 148 (217)
T ss_pred cEEEeCCccccc
Confidence 999999999863
No 338
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=66.44 E-value=8.3 Score=37.72 Aligned_cols=49 Identities=20% Similarity=0.307 Sum_probs=33.6
Q ss_pred HHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHH
Q 022298 139 AAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIP 197 (299)
Q Consensus 139 alfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~ 197 (299)
+++|.+.- ..+..|.=. |.|.+|+.++ ..||.++++||+|++.+ +++++
T Consensus 176 av~nta~v-------~~G~tvaV~--GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl-~~A~~ 228 (366)
T COG1062 176 AVVNTAKV-------EPGDTVAVF--GLGGVGLAAIQGAKAAGAGRIIAVDINPEKL-ELAKK 228 (366)
T ss_pred HhhhcccC-------CCCCeEEEE--eccHhHHHHHHHHHHcCCceEEEEeCCHHHH-HHHHh
Confidence 55566543 245555555 4456776654 46999999999999987 77754
No 339
>PRK05875 short chain dehydrogenase; Provisional
Probab=66.37 E-value=63 Score=28.99 Aligned_cols=83 Identities=11% Similarity=0.043 Sum_probs=48.2
Q ss_pred CCCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~ 226 (299)
.++.++|=.|+ +|.+|.+.+ .+|+ +|++++.++... +...+.+...+...++.++.+|+.+.... .....
T Consensus 5 ~~~k~vlItGa-sg~IG~~la~~l~~~G~-~V~~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 81 (276)
T PRK05875 5 FQDRTYLVTGG-GSGIGKGVAAGLVAAGA-AVMIVGRNPDKL-AAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAAT 81 (276)
T ss_pred CCCCEEEEECC-CcHHHHHHHHHHHHCCC-eEEEEeCCHHHH-HHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 45678886664 455666543 5687 699999987765 55555554332223467777887543211 11111
Q ss_pred CCCCCeeEEEEcC
Q 022298 227 GKDGPFDYMSVTP 239 (299)
Q Consensus 227 ~~~~~fDlI~iDP 239 (299)
...++.|+++.+.
T Consensus 82 ~~~~~~d~li~~a 94 (276)
T PRK05875 82 AWHGRLHGVVHCA 94 (276)
T ss_pred HHcCCCCEEEECC
Confidence 1124689999765
No 340
>PRK06197 short chain dehydrogenase; Provisional
Probab=66.08 E-value=72 Score=29.39 Aligned_cols=84 Identities=7% Similarity=0.013 Sum_probs=49.0
Q ss_pred CCCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~ 226 (299)
..+.++| +-.|+|.+|.+++ .+|+ +|+.+..+.... +.+.+.+........+.++.+|+.+...- ...+.
T Consensus 14 ~~~k~vl-ItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 90 (306)
T PRK06197 14 QSGRVAV-VTGANTGLGYETAAALAAKGA-HVVLAVRNLDKG-KAAAARITAATPGADVTLQELDLTSLASVRAAADALR 90 (306)
T ss_pred CCCCEEE-EcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHH
Confidence 4566777 5556777787654 4687 688899887765 44444444321123467788887654311 11111
Q ss_pred CCCCCeeEEEEcCC
Q 022298 227 GKDGPFDYMSVTPP 240 (299)
Q Consensus 227 ~~~~~fDlI~iDPP 240 (299)
...++.|+++.+.-
T Consensus 91 ~~~~~iD~li~nAg 104 (306)
T PRK06197 91 AAYPRIDLLINNAG 104 (306)
T ss_pred hhCCCCCEEEECCc
Confidence 12356899997764
No 341
>PLN02780 ketoreductase/ oxidoreductase
Probab=66.04 E-value=37 Score=32.13 Aligned_cols=59 Identities=10% Similarity=-0.015 Sum_probs=37.4
Q ss_pred CCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022298 155 RPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~ 216 (299)
.+..+|=.||.+ .+|.+ ++.+|+ +|+.++.|++.+ +.+.+.++...-..++..+..|+.
T Consensus 52 ~g~~~lITGAs~-GIG~alA~~La~~G~-~Vil~~R~~~~l-~~~~~~l~~~~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 52 YGSWALVTGPTD-GIGKGFAFQLARKGL-NLVLVARNPDKL-KDVSDSIQSKYSKTQIKTVVVDFS 114 (320)
T ss_pred cCCEEEEeCCCc-HHHHHHHHHHHHCCC-CEEEEECCHHHH-HHHHHHHHHHCCCcEEEEEEEECC
Confidence 467777777644 44544 456788 599999999987 666666654321123555566654
No 342
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=65.94 E-value=18 Score=32.72 Aligned_cols=82 Identities=12% Similarity=-0.082 Sum_probs=41.4
Q ss_pred CCCEEEEECCccchHHHHHHH----c-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcC--
Q 022298 155 RPGRWLDLYSGTGSVGIEAIS----R-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG-- 227 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlS----r-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~-- 227 (299)
+...++++|.--|.-.+..++ . +..+|++||++.+.. . ++-++...+.+++++++||..+..... +...
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~-~--~~a~e~hp~~~rI~~i~Gds~d~~~~~-~v~~~~ 107 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH-N--RKAIESHPMSPRITFIQGDSIDPEIVD-QVRELA 107 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT-----S-GGGG----TTEEEEES-SSSTHHHH-TSGSS-
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh-c--hHHHhhccccCceEEEECCCCCHHHHH-HHHHhh
Confidence 568999999998876665443 1 445899999977653 2 233333344578999999876543221 1111
Q ss_pred CCCCeeEEEEcCC
Q 022298 228 KDGPFDYMSVTPP 240 (299)
Q Consensus 228 ~~~~fDlI~iDPP 240 (299)
......+|+.|-=
T Consensus 108 ~~~~~vlVilDs~ 120 (206)
T PF04989_consen 108 SPPHPVLVILDSS 120 (206)
T ss_dssp ---SSEEEEESS-
T ss_pred ccCCceEEEECCC
Confidence 1235678888875
No 343
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=65.53 E-value=35 Score=29.55 Aligned_cols=30 Identities=20% Similarity=0.157 Sum_probs=18.5
Q ss_pred EEEECCc-cchHHHHHH-HcCCCEEEEEeCCH
Q 022298 159 WLDLYSG-TGSVGIEAI-SRGCSEVHFVEMDP 188 (299)
Q Consensus 159 VLDLfaG-SGalgIEAl-SrGa~~V~~VD~n~ 188 (299)
|+=+||| .|+.-...+ ..|..+++.+|.|.
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4445554 344333333 45888899999986
No 344
>PRK05876 short chain dehydrogenase; Provisional
Probab=65.53 E-value=73 Score=29.03 Aligned_cols=83 Identities=14% Similarity=0.066 Sum_probs=48.9
Q ss_pred CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH---hhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA---EQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~---~~~~ 226 (299)
+.+.++|=-|+ +|.+|.+ ++++|+ +|+.++.++..+ +.+.+.++..+. ++.++..|+.+...-. ....
T Consensus 4 ~~~k~vlVTGa-s~gIG~ala~~La~~G~-~Vv~~~r~~~~l-~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~ 78 (275)
T PRK05876 4 FPGRGAVITGG-ASGIGLATGTEFARRGA-RVVLGDVDKPGL-RQAVNHLRAEGF--DVHGVMCDVRHREEVTHLADEAF 78 (275)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcCC--eEEEEeCCCCCHHHHHHHHHHHH
Confidence 45677776655 4555655 345787 599999998776 555555544332 3667788875432111 1011
Q ss_pred CCCCCeeEEEEcCCC
Q 022298 227 GKDGPFDYMSVTPPY 241 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY 241 (299)
...++.|+++.+.-+
T Consensus 79 ~~~g~id~li~nAg~ 93 (275)
T PRK05876 79 RLLGHVDVVFSNAGI 93 (275)
T ss_pred HHcCCCCEEEECCCc
Confidence 112468999988754
No 345
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=65.10 E-value=24 Score=33.20 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=29.4
Q ss_pred CCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHH
Q 022298 155 RPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIP 197 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~ 197 (299)
.+.+||=.| .|.+|+.++ .+|+.+|+++|.+++.. +.+++
T Consensus 169 ~g~~VlV~G--~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~-~~a~~ 212 (343)
T PRK09880 169 QGKRVFVSG--VGPIGCLIVAAVKTLGAAEIVCADVSPRSL-SLARE 212 (343)
T ss_pred CCCEEEEEC--CCHHHHHHHHHHHHcCCcEEEEEeCCHHHH-HHHHH
Confidence 577887664 478887654 36887899999999886 66643
No 346
>PRK08589 short chain dehydrogenase; Validated
Probab=65.07 E-value=64 Score=29.18 Aligned_cols=83 Identities=13% Similarity=0.081 Sum_probs=47.1
Q ss_pred CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~ 226 (299)
+.++++|=.|+ +|.+|.+ ++++|+ +|+.++.+ ..+ +.+.+.++..+ .++.++.+|+.+...- .....
T Consensus 4 l~~k~vlItGa-s~gIG~aia~~l~~~G~-~vi~~~r~-~~~-~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~ 77 (272)
T PRK08589 4 LENKVAVITGA-STGIGQASAIALAQEGA-YVLAVDIA-EAV-SETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIK 77 (272)
T ss_pred CCCCEEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCc-HHH-HHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHH
Confidence 34667776555 4555655 345787 69999999 444 44444454433 2466777776543211 11111
Q ss_pred CCCCCeeEEEEcCCCC
Q 022298 227 GKDGPFDYMSVTPPYT 242 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY~ 242 (299)
...+..|+++.+.-+.
T Consensus 78 ~~~g~id~li~~Ag~~ 93 (272)
T PRK08589 78 EQFGRVDVLFNNAGVD 93 (272)
T ss_pred HHcCCcCEEEECCCCC
Confidence 1235689999887543
No 347
>PRK07890 short chain dehydrogenase; Provisional
Probab=64.95 E-value=88 Score=27.55 Aligned_cols=81 Identities=9% Similarity=-0.030 Sum_probs=48.5
Q ss_pred CCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH--H-hhhcC
Q 022298 155 RPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER--A-EQFVG 227 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~--~-~~~~~ 227 (299)
.+.++|=.| |+|.+|.. ++++|+ +|+.++.++... +.+.+.++..+ .++..+..|+.+.... . .....
T Consensus 4 ~~k~vlItG-a~~~IG~~la~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (258)
T PRK07890 4 KGKVVVVSG-VGPGLGRTLAVRAARAGA-DVVLAARTAERL-DEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALE 78 (258)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHH
Confidence 466777444 56666765 446787 699999998776 55655554433 2466788887543211 0 00111
Q ss_pred CCCCeeEEEEcCC
Q 022298 228 KDGPFDYMSVTPP 240 (299)
Q Consensus 228 ~~~~fDlI~iDPP 240 (299)
..+..|+|+.+.-
T Consensus 79 ~~g~~d~vi~~ag 91 (258)
T PRK07890 79 RFGRVDALVNNAF 91 (258)
T ss_pred HcCCccEEEECCc
Confidence 1256899998763
No 348
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=64.90 E-value=40 Score=32.61 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=23.8
Q ss_pred CCCCEEEEECCc-cchHHHHHHH-cCCCEEEEEeCC
Q 022298 154 LRPGRWLDLYSG-TGSVGIEAIS-RGCSEVHFVEMD 187 (299)
Q Consensus 154 ~~~~~VLDLfaG-SGalgIEAlS-rGa~~V~~VD~n 187 (299)
+...+||=+||| .|+--...|. .|..+++.||.|
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 456789888876 3444344443 588899999987
No 349
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=64.60 E-value=5.1 Score=36.88 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=25.7
Q ss_pred EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCCCC
Q 022298 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD 245 (299)
Q Consensus 208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~~~ 245 (299)
.+++++|....+.... ...+|+|+.||||....
T Consensus 17 ~~i~~~d~~~~l~~~~-----~~svDli~tdppy~~~~ 49 (302)
T COG0863 17 SKIYKGDCLEILKSLP-----ENSVDLIFTDPPYNNVK 49 (302)
T ss_pred hheecchHHHHHhhcc-----ccceeEEEcCCCccccc
Confidence 4578899888776542 35899999999999853
No 350
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=64.51 E-value=55 Score=29.41 Aligned_cols=83 Identities=13% Similarity=0.066 Sum_probs=47.3
Q ss_pred CCCCEEEEECCccc-hHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhh
Q 022298 154 LRPGRWLDLYSGTG-SVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQF 225 (299)
Q Consensus 154 ~~~~~VLDLfaGSG-algIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~ 225 (299)
+.++.+|=.|+++| .+|.+. ++.|+ +|+.++.+.+.. +.+++-.+..+ ...++.+|+.+...- ....
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~-~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~ 82 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKAR-PYVEPLAEELD---APIFLPLDVREPGQLEAVFARI 82 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhH-HHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHH
Confidence 46788999998873 667654 35687 588889886543 33333323222 134566776543211 1111
Q ss_pred cCCCCCeeEEEEcCCC
Q 022298 226 VGKDGPFDYMSVTPPY 241 (299)
Q Consensus 226 ~~~~~~fDlI~iDPPY 241 (299)
....++.|+++.+.-+
T Consensus 83 ~~~~g~ld~lv~nAg~ 98 (258)
T PRK07533 83 AEEWGRLDFLLHSIAF 98 (258)
T ss_pred HHHcCCCCEEEEcCcc
Confidence 1123578999987643
No 351
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=64.11 E-value=68 Score=28.25 Aligned_cols=82 Identities=17% Similarity=0.147 Sum_probs=47.4
Q ss_pred CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhh-----HHHHHhh
Q 022298 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET-----FLERAEQ 224 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~-----~l~~~~~ 224 (299)
+++.++|=.| |+|.+|... +.+|+ +|++++.++... +.+.+.++..+. .+..++.+|+.. .......
T Consensus 10 ~~~k~vlItG-~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~-~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~ 85 (247)
T PRK08945 10 LKDRIILVTG-AGDGIGREAALTYARHGA-TVILLGRTEEKL-EAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADT 85 (247)
T ss_pred cCCCEEEEeC-CCchHHHHHHHHHHHCCC-cEEEEeCCHHHH-HHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHH
Confidence 3466777665 577777654 34677 699999998876 666666655443 235566666531 1110001
Q ss_pred hcCCCCCeeEEEEcC
Q 022298 225 FVGKDGPFDYMSVTP 239 (299)
Q Consensus 225 ~~~~~~~fDlI~iDP 239 (299)
+....++.|.|+.+-
T Consensus 86 ~~~~~~~id~vi~~A 100 (247)
T PRK08945 86 IEEQFGRLDGVLHNA 100 (247)
T ss_pred HHHHhCCCCEEEECC
Confidence 111125789998764
No 352
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=63.98 E-value=14 Score=29.34 Aligned_cols=63 Identities=11% Similarity=0.045 Sum_probs=38.8
Q ss_pred ccchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc---chhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298 165 GTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV---RVETFLERAEQFVGKDGPFDYMSVTPP 240 (299)
Q Consensus 165 GSGalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~---D~~~~l~~~~~~~~~~~~fDlI~iDPP 240 (299)
|.|.+++.++. .| .+|+++|.++... +.+++ +|.. .++.. |..+.+... . .+..+|+||-...
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~-~~~~~----~Ga~---~~~~~~~~~~~~~i~~~---~-~~~~~d~vid~~g 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKL-ELAKE----LGAD---HVIDYSDDDFVEQIREL---T-GGRGVDVVIDCVG 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHH-HHHHH----TTES---EEEETTTSSHHHHHHHH---T-TTSSEEEEEESSS
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHH-HHHHh----hccc---ccccccccccccccccc---c-ccccceEEEEecC
Confidence 56777777664 68 6899999999886 77654 5632 23333 233333332 1 2347999886654
No 353
>PRK06194 hypothetical protein; Provisional
Probab=63.33 E-value=75 Score=28.70 Aligned_cols=84 Identities=7% Similarity=0.058 Sum_probs=48.6
Q ss_pred CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH--HH-hhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--RA-EQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~--~~-~~~~ 226 (299)
..+.++| +-.|+|.+|.++ +.+|+ +|+.+|.+...+ +.+.+.+...+ .++.++.+|+.+... .. ....
T Consensus 4 ~~~k~vl-VtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~ 78 (287)
T PRK06194 4 FAGKVAV-ITGAASGFGLAFARIGAALGM-KLVLADVQQDAL-DRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAAL 78 (287)
T ss_pred CCCCEEE-EeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHH-HHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHH
Confidence 3456777 555667777664 35687 699999987765 44444443322 246778888754321 11 1011
Q ss_pred CCCCCeeEEEEcCCCC
Q 022298 227 GKDGPFDYMSVTPPYT 242 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY~ 242 (299)
...+..|+||.+.-..
T Consensus 79 ~~~g~id~vi~~Ag~~ 94 (287)
T PRK06194 79 ERFGAVHLLFNNAGVG 94 (287)
T ss_pred HHcCCCCEEEECCCCC
Confidence 1124689999877543
No 354
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=62.84 E-value=91 Score=28.03 Aligned_cols=82 Identities=13% Similarity=0.106 Sum_probs=47.5
Q ss_pred CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~ 226 (299)
+.++++|=.|+ +|.+|.+. +++|+ +|+.++.+.... +.+.+.++..+ .++.++.+|+.+...- .....
T Consensus 8 ~~~k~vlVtGa-s~giG~~ia~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~ 82 (278)
T PRK08277 8 LKGKVAVITGG-GGVLGGAMAKELARAGA-KVAILDRNQEKA-EAVVAEIKAAG--GEALAVKADVLDKESLEQARQQIL 82 (278)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHH
Confidence 34666665554 45566553 35687 699999998775 55555554433 2466778886543211 11111
Q ss_pred CCCCCeeEEEEcCC
Q 022298 227 GKDGPFDYMSVTPP 240 (299)
Q Consensus 227 ~~~~~fDlI~iDPP 240 (299)
...+++|+++.+.-
T Consensus 83 ~~~g~id~li~~ag 96 (278)
T PRK08277 83 EDFGPCDILINGAG 96 (278)
T ss_pred HHcCCCCEEEECCC
Confidence 11257899998754
No 355
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=62.61 E-value=76 Score=28.40 Aligned_cols=84 Identities=13% Similarity=0.055 Sum_probs=51.4
Q ss_pred CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH---hhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA---EQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~---~~~~ 226 (299)
+.++++|=.|+++ .+|.+ ++.+|+ +|+.++.++..+ +.+.++++..+. ++.++.+|+.+...-. ....
T Consensus 8 ~~~k~~lItGa~~-~iG~~ia~~l~~~G~-~vv~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~ 82 (265)
T PRK07097 8 LKGKIALITGASY-GIGFAIAKAYAKAGA-TIVFNDINQELV-DKGLAAYRELGI--EAHGYVCDVTDEDGVQAMVSQIE 82 (265)
T ss_pred CCCCEEEEeCCCc-hHHHHHHHHHHHCCC-eEEEEeCCHHHH-HHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHH
Confidence 4567788777655 44544 445787 488889998876 666666665442 4677888875432111 1111
Q ss_pred CCCCCeeEEEEcCCCC
Q 022298 227 GKDGPFDYMSVTPPYT 242 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY~ 242 (299)
...++.|.++.+.-+.
T Consensus 83 ~~~~~id~li~~ag~~ 98 (265)
T PRK07097 83 KEVGVIDILVNNAGII 98 (265)
T ss_pred HhCCCCCEEEECCCCC
Confidence 1125689999877653
No 356
>PRK08267 short chain dehydrogenase; Provisional
Probab=61.84 E-value=49 Score=29.44 Aligned_cols=78 Identities=12% Similarity=0.100 Sum_probs=45.7
Q ss_pred EEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHh---hhcCC-C
Q 022298 158 RWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE---QFVGK-D 229 (299)
Q Consensus 158 ~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~---~~~~~-~ 229 (299)
++|=.| |||.+|.+. +++|+ +|+.++.+++.+ +.+.+.+. + .++.++++|+.+...-.. ..... .
T Consensus 3 ~vlItG-asg~iG~~la~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~--~--~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 75 (260)
T PRK08267 3 SIFITG-AASGIGRATALLFAAEGW-RVGAYDINEAGL-AALAAELG--A--GNAWTGALDVTDRAAWDAALADFAAATG 75 (260)
T ss_pred EEEEeC-CCchHHHHHHHHHHHCCC-eEEEEeCCHHHH-HHHHHHhc--C--CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 355444 456666654 35687 699999998876 55544432 1 346788888765331110 01111 3
Q ss_pred CCeeEEEEcCCCC
Q 022298 230 GPFDYMSVTPPYT 242 (299)
Q Consensus 230 ~~fDlI~iDPPY~ 242 (299)
+++|+|+.+.-+.
T Consensus 76 ~~id~vi~~ag~~ 88 (260)
T PRK08267 76 GRLDVLFNNAGIL 88 (260)
T ss_pred CCCCEEEECCCCC
Confidence 5789999877554
No 357
>KOG2356 consensus Transcriptional activator, adenine-specific DNA methyltransferase [Transcription; Signal transduction mechanisms]
Probab=61.79 E-value=6.3 Score=37.81 Aligned_cols=71 Identities=14% Similarity=0.060 Sum_probs=42.8
Q ss_pred CEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEE
Q 022298 157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMS 236 (299)
Q Consensus 157 ~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~ 236 (299)
..+.+++-|.+.-+++. +| .++.-+|-+.... +=+.++..++.+|+.+....+. .....+|+|+
T Consensus 126 ~~~~~m~n~~~~n~~~~--s~-qk~~~~dGs~g~k----------YyIPpkSsF~~gDv~~~~qll~---~H~llpdlII 189 (366)
T KOG2356|consen 126 SLSNLMSNGMINNWVRC--SG-QKPGIIDGSDGTK----------YYIPPKSSFHVGDVKDIEQLLR---AHDLLPDLII 189 (366)
T ss_pred chHHHHHhHhhhhhhcc--cc-cceeEeeCCCcce----------EEeCCccceecccHHHHHHHhH---HHhhcCCeEE
Confidence 34566666665554432 33 3466677654432 2234567789999877654331 1234579999
Q ss_pred EcCCCCC
Q 022298 237 VTPPYTA 243 (299)
Q Consensus 237 iDPPY~~ 243 (299)
+|||+..
T Consensus 190 iDPPW~N 196 (366)
T KOG2356|consen 190 IDPPWFN 196 (366)
T ss_pred eCCCCCC
Confidence 9999875
No 358
>PRK08303 short chain dehydrogenase; Provisional
Probab=61.64 E-value=64 Score=30.18 Aligned_cols=81 Identities=15% Similarity=0.015 Sum_probs=45.4
Q ss_pred CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCH----------HHHHHHHHHHHHHhCCCCcEEEEEcchhhHH
Q 022298 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDP----------WVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~----------~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l 219 (299)
+.++++|-.|+++| +|.+. ++.|+ +|+.++.+. +.+ +.+.+.++..+ .++.++++|+.+..
T Consensus 6 l~~k~~lITGgs~G-IG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~-~~~~~~l~~~~--~~~~~~~~Dv~~~~ 80 (305)
T PRK08303 6 LRGKVALVAGATRG-AGRGIAVELGAAGA-TVYVTGRSTRARRSEYDRPETI-EETAELVTAAG--GRGIAVQVDHLVPE 80 (305)
T ss_pred CCCCEEEEeCCCch-HHHHHHHHHHHCCC-EEEEEecccccccccccccchH-HHHHHHHHhcC--CceEEEEcCCCCHH
Confidence 45778887876554 56553 35687 588888873 233 33334444433 23556778865432
Q ss_pred HHH---hhhcCCCCCeeEEEEcC
Q 022298 220 ERA---EQFVGKDGPFDYMSVTP 239 (299)
Q Consensus 220 ~~~---~~~~~~~~~fDlI~iDP 239 (299)
.-. .......++.|+++.+.
T Consensus 81 ~v~~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 81 QVRALVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHHHHHcCCccEEEECC
Confidence 111 11111235789999887
No 359
>PRK07576 short chain dehydrogenase; Provisional
Probab=61.60 E-value=88 Score=28.11 Aligned_cols=81 Identities=14% Similarity=0.148 Sum_probs=47.5
Q ss_pred CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH--H-Hhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--R-AEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~--~-~~~~~ 226 (299)
+.+.++|=.|+ +|.+|.+ ++.+|+ +|+.++.+++.+ +...+.+...+ .++.++.+|+.+.-. . .....
T Consensus 7 ~~~k~ilItGa-sggIG~~la~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (264)
T PRK07576 7 FAGKNVVVVGG-TSGINLGIAQAFARAGA-NVAVASRSQEKV-DAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIA 81 (264)
T ss_pred CCCCEEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHH
Confidence 45678887764 6666665 345787 599999988765 55544454433 235677777653221 1 11011
Q ss_pred CCCCCeeEEEEcC
Q 022298 227 GKDGPFDYMSVTP 239 (299)
Q Consensus 227 ~~~~~fDlI~iDP 239 (299)
...+..|+++.+.
T Consensus 82 ~~~~~iD~vi~~a 94 (264)
T PRK07576 82 DEFGPIDVLVSGA 94 (264)
T ss_pred HHcCCCCEEEECC
Confidence 1124689999776
No 360
>PRK07109 short chain dehydrogenase; Provisional
Probab=60.90 E-value=84 Score=29.78 Aligned_cols=82 Identities=13% Similarity=0.044 Sum_probs=50.5
Q ss_pred CCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH---hhhcC
Q 022298 155 RPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA---EQFVG 227 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~---~~~~~ 227 (299)
.+.++|=.| |+|.+|.+. +.+|+ +|+.++.+++.+ +.+.+.++..+. ++.++.+|+.+...-. .....
T Consensus 7 ~~k~vlITG-as~gIG~~la~~la~~G~-~Vvl~~R~~~~l-~~~~~~l~~~g~--~~~~v~~Dv~d~~~v~~~~~~~~~ 81 (334)
T PRK07109 7 GRQVVVITG-ASAGVGRATARAFARRGA-KVVLLARGEEGL-EALAAEIRAAGG--EALAVVADVADAEAVQAAADRAEE 81 (334)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHHcCC--cEEEEEecCCCHHHHHHHHHHHHH
Confidence 455666555 566677664 35787 599999998887 667777765553 4667788865432111 11111
Q ss_pred CCCCeeEEEEcCCC
Q 022298 228 KDGPFDYMSVTPPY 241 (299)
Q Consensus 228 ~~~~fDlI~iDPPY 241 (299)
..++.|+++.+.-.
T Consensus 82 ~~g~iD~lInnAg~ 95 (334)
T PRK07109 82 ELGPIDTWVNNAMV 95 (334)
T ss_pred HCCCCCEEEECCCc
Confidence 23578999977643
No 361
>PRK06720 hypothetical protein; Provisional
Probab=60.50 E-value=1.1e+02 Score=26.26 Aligned_cols=83 Identities=12% Similarity=0.079 Sum_probs=47.8
Q ss_pred CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH---HHhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~---~~~~~~ 226 (299)
+.+..+|--|++.| +|.+ ++..|+ +|+.+|.+.... +.+.+.+...+ ....++..|+.+... ...+..
T Consensus 14 l~gk~~lVTGa~~G-IG~aia~~l~~~G~-~V~l~~r~~~~~-~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~v~~~~ 88 (169)
T PRK06720 14 LAGKVAIVTGGGIG-IGRNTALLLAKQGA-KVIVTDIDQESG-QATVEEITNLG--GEALFVSYDMEKQGDWQRVISITL 88 (169)
T ss_pred cCCCEEEEecCCCh-HHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHH
Confidence 34677777776654 4443 345676 599999988776 55555554433 235567777643321 111111
Q ss_pred CCCCCeeEEEEcCCC
Q 022298 227 GKDGPFDYMSVTPPY 241 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY 241 (299)
...++.|+++.+.-.
T Consensus 89 ~~~G~iDilVnnAG~ 103 (169)
T PRK06720 89 NAFSRIDMLFQNAGL 103 (169)
T ss_pred HHcCCCCEEEECCCc
Confidence 123578999988653
No 362
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.08 E-value=1.2e+02 Score=26.47 Aligned_cols=83 Identities=8% Similarity=0.048 Sum_probs=48.4
Q ss_pred CCCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH--H-Hhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--R-AEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~--~-~~~~~ 226 (299)
+.+.++|=.|+ +|.+|..++ ++|+ +|+.++.++..+ +.+.+.++..+ .++.+++.|+.+.-. . .....
T Consensus 3 ~~~~~~lItG~-~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 77 (253)
T PRK08217 3 LKDKVIVITGG-AQGLGRAMAEYLAQKGA-KLALIDLNQEKL-EEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIA 77 (253)
T ss_pred CCCCEEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHH
Confidence 35678886654 666676643 5687 699999998765 55555454433 246677787643211 1 11011
Q ss_pred CCCCCeeEEEEcCCC
Q 022298 227 GKDGPFDYMSVTPPY 241 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY 241 (299)
...+.+|.||.+.-+
T Consensus 78 ~~~~~id~vi~~ag~ 92 (253)
T PRK08217 78 EDFGQLNGLINNAGI 92 (253)
T ss_pred HHcCCCCEEEECCCc
Confidence 112468999987653
No 363
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=60.00 E-value=75 Score=28.08 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=21.6
Q ss_pred CCCEEEEECCccchHHHHHH---H-cCCCEEEEEeCC
Q 022298 155 RPGRWLDLYSGTGSVGIEAI---S-RGCSEVHFVEMD 187 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAl---S-rGa~~V~~VD~n 187 (299)
...+|+=+||| ++|.|.+ . .|..+++.+|-+
T Consensus 18 ~~s~VlviG~g--glGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 18 RSAKVLIIGAG--ALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred hhCcEEEECCC--HHHHHHHHHHHHcCCCEEEEEECC
Confidence 45788877665 4555543 3 488899999866
No 364
>PRK05866 short chain dehydrogenase; Provisional
Probab=59.95 E-value=1.1e+02 Score=28.38 Aligned_cols=82 Identities=15% Similarity=0.116 Sum_probs=48.8
Q ss_pred CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH--HH-hhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--RA-EQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~--~~-~~~~ 226 (299)
+.+.++|=.|+ +|.+|.+. +++|+ +|+.++.+.+.+ +-+.+.+...+ ..+.++.+|+.+... .. ....
T Consensus 38 ~~~k~vlItGa-sggIG~~la~~La~~G~-~Vi~~~R~~~~l-~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~ 112 (293)
T PRK05866 38 LTGKRILLTGA-SSGIGEAAAEQFARRGA-TVVAVARREDLL-DAVADRITRAG--GDAMAVPCDLSDLDAVDALVADVE 112 (293)
T ss_pred CCCCEEEEeCC-CcHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHH
Confidence 34567775554 56666654 35676 699999998876 66666665443 236677888654321 11 1011
Q ss_pred CCCCCeeEEEEcCC
Q 022298 227 GKDGPFDYMSVTPP 240 (299)
Q Consensus 227 ~~~~~fDlI~iDPP 240 (299)
...+..|+++.+.-
T Consensus 113 ~~~g~id~li~~AG 126 (293)
T PRK05866 113 KRIGGVDILINNAG 126 (293)
T ss_pred HHcCCCCEEEECCC
Confidence 11247899998763
No 365
>PRK07478 short chain dehydrogenase; Provisional
Probab=59.70 E-value=1e+02 Score=27.29 Aligned_cols=83 Identities=13% Similarity=0.064 Sum_probs=50.1
Q ss_pred CCCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~ 226 (299)
+.+.++| +-.|+|.+|.+.+ ++|+ +|+.++.++..+ +.+.+.++..+ .++.++.+|+.+.... .....
T Consensus 4 ~~~k~~l-ItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 78 (254)
T PRK07478 4 LNGKVAI-ITGASSGIGRAAAKLFAREGA-KVVVGARRQAEL-DQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAV 78 (254)
T ss_pred CCCCEEE-EeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHH
Confidence 3456676 4455666776643 4687 699999998886 66666665554 2366777776543211 11111
Q ss_pred CCCCCeeEEEEcCCC
Q 022298 227 GKDGPFDYMSVTPPY 241 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY 241 (299)
...++.|+++.+.-.
T Consensus 79 ~~~~~id~li~~ag~ 93 (254)
T PRK07478 79 ERFGGLDIAFNNAGT 93 (254)
T ss_pred HhcCCCCEEEECCCC
Confidence 122578999977644
No 366
>PRK08251 short chain dehydrogenase; Provisional
Probab=59.49 E-value=1.1e+02 Score=26.84 Aligned_cols=82 Identities=12% Similarity=0.039 Sum_probs=48.2
Q ss_pred CEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---HhhhcCCC
Q 022298 157 GRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFVGKD 229 (299)
Q Consensus 157 ~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~~~~ 229 (299)
+++|=.| |+|.+|.+.+ ..|+ +|+.++.++... +.+...+....-..++.++.+|+.+.... ...+....
T Consensus 3 k~vlItG-as~giG~~la~~l~~~g~-~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK08251 3 QKILITG-ASSGLGAGMAREFAAKGR-DLALCARRTDRL-EELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDEL 79 (248)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4566444 6788887643 4576 699999998876 66655554332122467788887654211 11111123
Q ss_pred CCeeEEEEcCCC
Q 022298 230 GPFDYMSVTPPY 241 (299)
Q Consensus 230 ~~fDlI~iDPPY 241 (299)
+..|+|+.+.-+
T Consensus 80 ~~id~vi~~ag~ 91 (248)
T PRK08251 80 GGLDRVIVNAGI 91 (248)
T ss_pred CCCCEEEECCCc
Confidence 568999987643
No 367
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=59.31 E-value=88 Score=31.22 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=31.0
Q ss_pred cCCCEEEEEeCCHH---HHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCC
Q 022298 176 RGCSEVHFVEMDPW---VVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP 240 (299)
Q Consensus 176 rGa~~V~~VD~n~~---Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPP 240 (299)
.+..+|..|+.|+. +. +.++...+..++. +.. ..+..++...... ...+|+|++|-|
T Consensus 249 ~~g~~V~li~~D~~r~~a~-eqL~~~a~~~~vp--~~~-~~~~~~l~~~l~~----~~~~DlVlIDt~ 308 (424)
T PRK05703 249 YGKKKVALITLDTYRIGAV-EQLKTYAKIMGIP--VEV-VYDPKELAKALEQ----LRDCDVILIDTA 308 (424)
T ss_pred cCCCeEEEEECCccHHHHH-HHHHHHHHHhCCc--eEc-cCCHHhHHHHHHH----hCCCCEEEEeCC
Confidence 45567999999985 33 4455445555553 111 1222222222211 246899999977
No 368
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.98 E-value=86 Score=27.38 Aligned_cols=81 Identities=7% Similarity=-0.001 Sum_probs=48.3
Q ss_pred CCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH---hhhcC
Q 022298 155 RPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA---EQFVG 227 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~---~~~~~ 227 (299)
.+.++|=. .|+|.+|.+. +++|+. |+.++.++... +.+..++.. ...+.++.+|+.+...-. .....
T Consensus 4 ~~~~vlIt-Gasg~iG~~l~~~l~~~G~~-V~~~~r~~~~~-~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 77 (251)
T PRK07231 4 EGKVAIVT-GASSGIGEGIARRFAAEGAR-VVVTDRNEEAA-ERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALE 77 (251)
T ss_pred CCcEEEEE-CCCChHHHHHHHHHHHCCCE-EEEEeCCHHHH-HHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 45666655 4556667653 457874 99999998775 555555543 234677888765432111 10111
Q ss_pred CCCCeeEEEEcCCC
Q 022298 228 KDGPFDYMSVTPPY 241 (299)
Q Consensus 228 ~~~~fDlI~iDPPY 241 (299)
..+.+|.|+...-+
T Consensus 78 ~~~~~d~vi~~ag~ 91 (251)
T PRK07231 78 RFGSVDILVNNAGT 91 (251)
T ss_pred HhCCCCEEEECCCC
Confidence 23578999987755
No 369
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=58.85 E-value=66 Score=26.42 Aligned_cols=76 Identities=17% Similarity=0.157 Sum_probs=46.4
Q ss_pred CCCCEEEEECCccchHHHH--HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298 154 LRPGRWLDLYSGTGSVGIE--AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIE--AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~ 231 (299)
+.+.++|=+|||-=+-++. ++.+|+.+++.+..+.+.+ +.+.+.+ +- ..+.++..+ +..... ..
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra-~~l~~~~---~~-~~~~~~~~~--~~~~~~-------~~ 75 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERA-EALAEEF---GG-VNIEAIPLE--DLEEAL-------QE 75 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHH-HHHHHHH---TG-CSEEEEEGG--GHCHHH-------HT
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHH-HHHHHHc---Cc-cccceeeHH--HHHHHH-------hh
Confidence 5789999998864332222 3357999999999998765 5554444 21 124444432 222111 47
Q ss_pred eeEEEEcCCCCC
Q 022298 232 FDYMSVTPPYTA 243 (299)
Q Consensus 232 fDlI~iDPPY~~ 243 (299)
+|+|+.-.|-..
T Consensus 76 ~DivI~aT~~~~ 87 (135)
T PF01488_consen 76 ADIVINATPSGM 87 (135)
T ss_dssp ESEEEE-SSTTS
T ss_pred CCeEEEecCCCC
Confidence 999998888664
No 370
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=58.22 E-value=24 Score=32.90 Aligned_cols=63 Identities=19% Similarity=0.142 Sum_probs=49.6
Q ss_pred CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHH
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l 219 (299)
+....|.+++-|.|.+.-..+..|+++...||+|++-+ .-++.-.+.. ..+..++.+|+..+.
T Consensus 49 ~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFi-p~LQ~L~EAa--~~~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 49 LTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFI-PGLQMLSEAA--PGKLRIHHGDVLRFK 111 (326)
T ss_pred cccceeEEecCCCCchhHHHHhcchhheeeeeeccccC-hHHHHHhhcC--CcceEEeccccceeh
Confidence 56789999999999999888889999999999999876 6555444432 345778888887653
No 371
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=57.98 E-value=5.5 Score=34.55 Aligned_cols=13 Identities=31% Similarity=0.736 Sum_probs=11.3
Q ss_pred eeEEEEcCCCCCC
Q 022298 232 FDYMSVTPPYTAV 244 (299)
Q Consensus 232 fDlI~iDPPY~~~ 244 (299)
||+|++|||....
T Consensus 1 fdvI~~DPPW~~~ 13 (176)
T PF05063_consen 1 FDVIYADPPWPNK 13 (176)
T ss_pred CCEEEEeCCCCCc
Confidence 8999999998764
No 372
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=57.95 E-value=19 Score=33.81 Aligned_cols=59 Identities=17% Similarity=0.117 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccc----hHHHHHHHcC------CCEEEEEeCCHHHHHHHHHH
Q 022298 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG----SVGIEAISRG------CSEVHFVEMDPWVVSNVLIP 197 (299)
Q Consensus 134 d~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSG----algIEAlSrG------a~~V~~VD~n~~Al~~~a~~ 197 (299)
+.+++.+...|..... ...-+|+-.+|+|| ++++.+...+ .-+|+|.|+|..++ +.|+.
T Consensus 79 ~~l~~~v~p~l~~~~~----~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L-~~A~~ 147 (268)
T COG1352 79 EELRDEVLPELVKRKK----GRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVL-EKARA 147 (268)
T ss_pred HHHHHHHHHHHHhhcc----CCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHH-HHHhc
Confidence 3455555554433210 13579999999999 6666554432 23799999999998 77764
No 373
>PRK08703 short chain dehydrogenase; Provisional
Probab=57.82 E-value=1.2e+02 Score=26.57 Aligned_cols=81 Identities=12% Similarity=0.077 Sum_probs=46.7
Q ss_pred CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhh--------HHHH
Q 022298 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET--------FLER 221 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~--------~l~~ 221 (299)
+.+.++|=.| |+|.+|.+. +.+|+ +|+.++.++... +.+...+...+.. ...++..|+.+ +...
T Consensus 4 l~~k~vlItG-~sggiG~~la~~l~~~g~-~V~~~~r~~~~~-~~~~~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~ 79 (239)
T PRK08703 4 LSDKTILVTG-ASQGLGEQVAKAYAAAGA-TVILVARHQKKL-EKVYDAIVEAGHP-EPFAIRFDLMSAEEKEFEQFAAT 79 (239)
T ss_pred CCCCEEEEEC-CCCcHHHHHHHHHHHcCC-EEEEEeCChHHH-HHHHHHHHHcCCC-CcceEEeeecccchHHHHHHHHH
Confidence 4567888777 567777664 35687 599999999876 6565555443321 23445555421 1211
Q ss_pred HhhhcCCCCCeeEEEEcCC
Q 022298 222 AEQFVGKDGPFDYMSVTPP 240 (299)
Q Consensus 222 ~~~~~~~~~~fDlI~iDPP 240 (299)
.. ....+..|.|+.+.-
T Consensus 80 i~--~~~~~~id~vi~~ag 96 (239)
T PRK08703 80 IA--EATQGKLDGIVHCAG 96 (239)
T ss_pred HH--HHhCCCCCEEEEecc
Confidence 11 011146799987664
No 374
>PRK07831 short chain dehydrogenase; Provisional
Probab=57.79 E-value=1.3e+02 Score=26.85 Aligned_cols=84 Identities=13% Similarity=0.102 Sum_probs=47.4
Q ss_pred CCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHH-hCCCCcEEEEEcchhhHHH--HH-hhhc
Q 022298 155 RPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEW-TGFLDVSSIHTVRVETFLE--RA-EQFV 226 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~-~g~~~~~~vi~~D~~~~l~--~~-~~~~ 226 (299)
.+.++|=.|+....+|.+ ++.+|+ +|+.+|.+.+.+ +.+.+.++. .+. .++.++.+|+.+... .. ....
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~ 92 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRL-GETADELAAELGL-GRVEAVVCDVTSEAQVDALIDAAV 92 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHHhcCC-ceEEEEEccCCCHHHHHHHHHHHH
Confidence 466777776521134444 345687 499999988776 555555543 232 246678888754321 11 0011
Q ss_pred CCCCCeeEEEEcCCC
Q 022298 227 GKDGPFDYMSVTPPY 241 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY 241 (299)
...++.|+++.+.-+
T Consensus 93 ~~~g~id~li~~ag~ 107 (262)
T PRK07831 93 ERLGRLDVLVNNAGL 107 (262)
T ss_pred HHcCCCCEEEECCCC
Confidence 112578999988754
No 375
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=57.78 E-value=10 Score=31.05 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=26.1
Q ss_pred CCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHH
Q 022298 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWV 190 (299)
Q Consensus 156 ~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~A 190 (299)
...++|+|||.|-+---+.+.|.. =+++|.-.+.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~-G~GiD~R~Rk 92 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYP-GWGIDARRRK 92 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCC-cccccccccc
Confidence 457999999999988767778874 5788865443
No 376
>PRK07814 short chain dehydrogenase; Provisional
Probab=57.68 E-value=1.1e+02 Score=27.34 Aligned_cols=82 Identities=12% Similarity=0.052 Sum_probs=49.7
Q ss_pred CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH---hhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA---EQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~---~~~~ 226 (299)
+.+.++|=.|+ +|.+|.+. +++|+ +|+.++.+++.. +.+.+.++..+ .++.++.+|+.+..... ....
T Consensus 8 ~~~~~vlItGa-sggIG~~~a~~l~~~G~-~Vi~~~r~~~~~-~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 82 (263)
T PRK07814 8 LDDQVAVVTGA-GRGLGAAIALAFAEAGA-DVLIAARTESQL-DEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAV 82 (263)
T ss_pred CCCCEEEEECC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHH
Confidence 45677777764 66677653 46788 799999998776 55555554433 34677778865432111 1011
Q ss_pred CCCCCeeEEEEcCC
Q 022298 227 GKDGPFDYMSVTPP 240 (299)
Q Consensus 227 ~~~~~fDlI~iDPP 240 (299)
...+++|+||...=
T Consensus 83 ~~~~~id~vi~~Ag 96 (263)
T PRK07814 83 EAFGRLDIVVNNVG 96 (263)
T ss_pred HHcCCCCEEEECCC
Confidence 11247899997653
No 377
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=57.51 E-value=1.2e+02 Score=26.38 Aligned_cols=81 Identities=10% Similarity=0.122 Sum_probs=48.8
Q ss_pred CCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH--H-HhhhcCC
Q 022298 156 PGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--R-AEQFVGK 228 (299)
Q Consensus 156 ~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~--~-~~~~~~~ 228 (299)
+.++|=.|+ +|.+|.+. +++|+ +|+.++.+.... ..+...++..+ .++.++.+|+.+... . .......
T Consensus 3 ~~~ilItGa-s~~iG~~la~~l~~~g~-~v~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~ 77 (250)
T TIGR03206 3 DKTAIVTGG-GGGIGGATCRRFAEEGA-KVAVFDLNREAA-EKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQA 77 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCC-EEEEecCCHHHH-HHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 566766654 56677664 35676 699999998876 66666665443 246778888654321 1 1000111
Q ss_pred CCCeeEEEEcCCC
Q 022298 229 DGPFDYMSVTPPY 241 (299)
Q Consensus 229 ~~~fDlI~iDPPY 241 (299)
.+..|++|....+
T Consensus 78 ~~~~d~vi~~ag~ 90 (250)
T TIGR03206 78 LGPVDVLVNNAGW 90 (250)
T ss_pred cCCCCEEEECCCC
Confidence 2468999988765
No 378
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=57.46 E-value=32 Score=31.24 Aligned_cols=21 Identities=24% Similarity=0.150 Sum_probs=14.8
Q ss_pred HHHHHHHcCCCEEEEEeCCHHH
Q 022298 169 VGIEAISRGCSEVHFVEMDPWV 190 (299)
Q Consensus 169 lgIEAlSrGa~~V~~VD~n~~A 190 (299)
++.++.++|. +|..||.|+..
T Consensus 22 LA~~la~~G~-~VlliD~DpQ~ 42 (231)
T PRK13849 22 LCAALASDGK-RVALFEADENR 42 (231)
T ss_pred HHHHHHhCCC-cEEEEeCCCCC
Confidence 4444556675 69999998875
No 379
>PRK05717 oxidoreductase; Validated
Probab=57.17 E-value=94 Score=27.55 Aligned_cols=81 Identities=14% Similarity=0.147 Sum_probs=46.9
Q ss_pred CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~ 226 (299)
++++++|=.| |+|.+|.++ +++|+ +|+.++.++... ..+.+. .+ +++.++.+|+.+...- .....
T Consensus 8 ~~~k~vlItG-~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~-~~~~~~---~~--~~~~~~~~Dl~~~~~~~~~~~~~~ 79 (255)
T PRK05717 8 HNGRVALVTG-AARGIGLGIAAWLIAEGW-QVVLADLDRERG-SKVAKA---LG--ENAWFIAMDVADEAQVAAGVAEVL 79 (255)
T ss_pred cCCCEEEEeC-CcchHHHHHHHHHHHcCC-EEEEEcCCHHHH-HHHHHH---cC--CceEEEEccCCCHHHHHHHHHHHH
Confidence 5677888555 456777654 35676 699999887654 333222 22 3466778887653211 11111
Q ss_pred CCCCCeeEEEEcCCCC
Q 022298 227 GKDGPFDYMSVTPPYT 242 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY~ 242 (299)
...+++|++|.+.-+.
T Consensus 80 ~~~g~id~li~~ag~~ 95 (255)
T PRK05717 80 GQFGRLDALVCNAAIA 95 (255)
T ss_pred HHhCCCCEEEECCCcc
Confidence 1124689999877654
No 380
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=57.03 E-value=24 Score=33.62 Aligned_cols=100 Identities=17% Similarity=0.090 Sum_probs=65.4
Q ss_pred EecCCCCCCCCCHHHHHHHHHHHHHhc-CCCCCCCCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH
Q 022298 121 LLSPKGMDVRPMMEVVKGAAFDILQSA-GGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199 (299)
Q Consensus 121 L~~p~~~~~RPttd~Vrealfn~L~~~-~~~~~~~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~ 199 (299)
|+.|.+.-.|.|. ++-||+...+... .+ .--.++...+||||-.|...--+..|+. .|++||.-+-|. |+
T Consensus 178 LKfp~dAPSRStL-KLEEA~~tfip~~E~~-~rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~------sL 248 (358)
T COG2933 178 LKFPADAPSRSTL-KLEEAFHTFIPRDEWD-KRLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQ------SL 248 (358)
T ss_pred ccCCCCCCchhhh-hHHHHHHHhcChhhhh-hhhcCCceeeecccCCCccchhhhhcce-EEEEeccchhhh------hh
Confidence 5555543334443 4667776655321 00 0012578899999999999998889987 699999877653 33
Q ss_pred HHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcC
Q 022298 200 EWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP 239 (299)
Q Consensus 200 ~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDP 239 (299)
-..| +++-...|-++|-.. ..+.|-.++|.
T Consensus 249 ~dtg---~v~h~r~DGfk~~P~-------r~~idWmVCDm 278 (358)
T COG2933 249 MDTG---QVTHLREDGFKFRPT-------RSNIDWMVCDM 278 (358)
T ss_pred hccc---ceeeeeccCcccccC-------CCCCceEEeeh
Confidence 3333 466677888877431 35788888886
No 381
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=56.97 E-value=59 Score=31.69 Aligned_cols=71 Identities=14% Similarity=0.011 Sum_probs=43.5
Q ss_pred CCCEEEEECCc-cchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCe
Q 022298 155 RPGRWLDLYSG-TGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (299)
Q Consensus 155 ~~~~VLDLfaG-SGalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~f 232 (299)
++.+|+=.|+| .|.+++..+. .|| +|+++|.+++.. +.+++ +|.+ .++...-.+..+.. .+.|
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~-e~a~~----lGAd---~~i~~~~~~~~~~~------~~~~ 230 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKL-ELAKK----LGAD---HVINSSDSDALEAV------KEIA 230 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHH-HHHHH----hCCc---EEEEcCCchhhHHh------HhhC
Confidence 57788777665 4456666555 785 799999999986 66654 6643 23443222233222 1349
Q ss_pred eEEEEcCC
Q 022298 233 DYMSVTPP 240 (299)
Q Consensus 233 DlI~iDPP 240 (299)
|+|+.--|
T Consensus 231 d~ii~tv~ 238 (339)
T COG1064 231 DAIIDTVG 238 (339)
T ss_pred cEEEECCC
Confidence 98886655
No 382
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=56.73 E-value=1.2e+02 Score=26.87 Aligned_cols=83 Identities=19% Similarity=0.205 Sum_probs=50.9
Q ss_pred CCCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH--H-Hhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--R-AEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~--~-~~~~~ 226 (299)
+.++++|=.| |+|.+|.+.+ ++|+ +|+.++.++... +.+.+.++..+. ++.++.+|+.+... . .....
T Consensus 8 ~~~k~vlItG-a~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~-~~~~~~i~~~~~--~~~~~~~D~~~~~~~~~~~~~~~ 82 (255)
T PRK07523 8 LTGRRALVTG-SSQGIGYALAEGLAQAGA-EVILNGRDPAKL-AAAAESLKGQGL--SAHALAFDVTDHDAVRAAIDAFE 82 (255)
T ss_pred CCCCEEEEEC-CcchHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHhcCc--eEEEEEccCCCHHHHHHHHHHHH
Confidence 4577888555 5777777643 4687 699999998876 556566654442 36677777654221 1 11111
Q ss_pred CCCCCeeEEEEcCCC
Q 022298 227 GKDGPFDYMSVTPPY 241 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY 241 (299)
...+..|.||.+.-.
T Consensus 83 ~~~~~~d~li~~ag~ 97 (255)
T PRK07523 83 AEIGPIDILVNNAGM 97 (255)
T ss_pred HhcCCCCEEEECCCC
Confidence 123568999987754
No 383
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=56.44 E-value=1.1e+02 Score=26.94 Aligned_cols=82 Identities=7% Similarity=-0.050 Sum_probs=45.5
Q ss_pred CEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---HhhhcCCC
Q 022298 157 GRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFVGKD 229 (299)
Q Consensus 157 ~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~~~~ 229 (299)
+++|=.| |+|.+|.+ ++++|+ +|+.++.+.... +.+...++...-..++.++.+|+.+...- ........
T Consensus 3 k~ilItG-~~~~IG~~la~~l~~~g~-~vi~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 79 (259)
T PRK12384 3 QVAVVIG-GGQTLGAFLCHGLAEEGY-RVAVADINSEKA-ANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIF 79 (259)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4566666 45666654 345787 699999988765 44444443321112367778886543211 11111112
Q ss_pred CCeeEEEEcCCC
Q 022298 230 GPFDYMSVTPPY 241 (299)
Q Consensus 230 ~~fDlI~iDPPY 241 (299)
++.|.|+.+.-+
T Consensus 80 ~~id~vv~~ag~ 91 (259)
T PRK12384 80 GRVDLLVYNAGI 91 (259)
T ss_pred CCCCEEEECCCc
Confidence 568999987643
No 384
>PHA02518 ParA-like protein; Provisional
Probab=56.44 E-value=24 Score=30.45 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=13.2
Q ss_pred HHHHHcCCCEEEEEeCCHHH
Q 022298 171 IEAISRGCSEVHFVEMDPWV 190 (299)
Q Consensus 171 IEAlSrGa~~V~~VD~n~~A 190 (299)
.++.++|. +|..||.|+..
T Consensus 23 ~~la~~g~-~vlliD~D~q~ 41 (211)
T PHA02518 23 SWLHADGH-KVLLVDLDPQG 41 (211)
T ss_pred HHHHhCCC-eEEEEeCCCCC
Confidence 33344564 69999999875
No 385
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=56.20 E-value=17 Score=34.97 Aligned_cols=40 Identities=23% Similarity=0.241 Sum_probs=29.2
Q ss_pred CCCEEEEECCccchHHHHH---H-HcCCCEEEEEeCCHHHHHHHHHH
Q 022298 155 RPGRWLDLYSGTGSVGIEA---I-SRGCSEVHFVEMDPWVVSNVLIP 197 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEA---l-SrGa~~V~~VD~n~~Al~~~a~~ 197 (299)
.+.+|+=+||| .+|+-+ + ..|+.+|+.+|.++.-+ +.+++
T Consensus 168 ~~~~V~V~GaG--pIGLla~~~a~~~Ga~~Viv~d~~~~Rl-~~A~~ 211 (350)
T COG1063 168 PGGTVVVVGAG--PIGLLAIALAKLLGASVVIVVDRSPERL-ELAKE 211 (350)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHHcCCceEEEeCCCHHHH-HHHHH
Confidence 34478887665 455543 3 35999999999999987 77766
No 386
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=56.16 E-value=50 Score=32.13 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=24.0
Q ss_pred CCCCEEEEECCc-cchHHHHHHH-cCCCEEEEEeCC
Q 022298 154 LRPGRWLDLYSG-TGSVGIEAIS-RGCSEVHFVEMD 187 (299)
Q Consensus 154 ~~~~~VLDLfaG-SGalgIEAlS-rGa~~V~~VD~n 187 (299)
+.+.+|+=+||| .|+..+..|. .|..+++.+|-+
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 346788888775 4554444444 588899999998
No 387
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.08 E-value=1.1e+02 Score=28.47 Aligned_cols=82 Identities=11% Similarity=0.051 Sum_probs=46.0
Q ss_pred CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCH-HHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH--HH-hhh
Q 022298 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDP-WVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--RA-EQF 225 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~-~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~--~~-~~~ 225 (299)
+++.++|=.|++. .+|.+ ++++|+ +|+.+|.+. ..+ +.+.+.++..+ .++.++.+|+.+... .. ...
T Consensus 10 l~~k~~lVTGas~-gIG~~ia~~L~~~Ga-~Vv~~~~~~~~~~-~~~~~~i~~~g--~~~~~~~~Dv~d~~~~~~~~~~~ 84 (306)
T PRK07792 10 LSGKVAVVTGAAA-GLGRAEALGLARLGA-TVVVNDVASALDA-SDVLDEIRAAG--AKAVAVAGDISQRATADELVATA 84 (306)
T ss_pred CCCCEEEEECCCC-hHHHHHHHHHHHCCC-EEEEecCCchhHH-HHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHH
Confidence 5677888666554 44544 456788 588888753 333 34444444433 346678888754321 11 111
Q ss_pred cCCCCCeeEEEEcCCC
Q 022298 226 VGKDGPFDYMSVTPPY 241 (299)
Q Consensus 226 ~~~~~~fDlI~iDPPY 241 (299)
.. .++.|+++.+.-.
T Consensus 85 ~~-~g~iD~li~nAG~ 99 (306)
T PRK07792 85 VG-LGGLDIVVNNAGI 99 (306)
T ss_pred HH-hCCCCEEEECCCC
Confidence 11 3578999977543
No 388
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=55.95 E-value=85 Score=27.73 Aligned_cols=76 Identities=18% Similarity=0.111 Sum_probs=43.0
Q ss_pred CCCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHH-------------------HHHHHHHHHHHHhCCCCcEEE
Q 022298 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPW-------------------VVSNVLIPNLEWTGFLDVSSI 210 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~-------------------Al~~~a~~N~~~~g~~~~~~v 210 (299)
+...+|+=+|| |++|.|.+ ..|..+++.+|-+.- -+ +.+.++++.++-.-+++.
T Consensus 19 L~~s~VlIiG~--gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka-~a~~~~L~~lNp~v~i~~ 95 (197)
T cd01492 19 LRSARILLIGL--KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRA-EASLERLRALNPRVKVSV 95 (197)
T ss_pred HHhCcEEEEcC--CHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHH-HHHHHHHHHHCCCCEEEE
Confidence 34678877754 55777754 358999999987632 12 455666666653323444
Q ss_pred EEcchhhHHHHHhhhcCCCCCeeEEEEc
Q 022298 211 HTVRVETFLERAEQFVGKDGPFDYMSVT 238 (299)
Q Consensus 211 i~~D~~~~l~~~~~~~~~~~~fDlI~iD 238 (299)
+...+.+..... -..||+|+..
T Consensus 96 ~~~~~~~~~~~~------~~~~dvVi~~ 117 (197)
T cd01492 96 DTDDISEKPEEF------FSQFDVVVAT 117 (197)
T ss_pred EecCccccHHHH------HhCCCEEEEC
Confidence 443332211111 1578998853
No 389
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=55.50 E-value=47 Score=33.24 Aligned_cols=39 Identities=21% Similarity=0.206 Sum_probs=29.0
Q ss_pred CCEEEEECCccchHHHHHHHcCC-CEEEEEeCCHHHHHHHHH
Q 022298 156 PGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLI 196 (299)
Q Consensus 156 ~~~VLDLfaGSGalgIEAlSrGa-~~V~~VD~n~~Al~~~a~ 196 (299)
-..|+|+|+|.|-++- .+|.|. -.|.+||-|.... +.++
T Consensus 154 i~~vvD~GaG~G~LSr-~lSl~y~lsV~aIegsq~~~-~ra~ 193 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSR-FLSLGYGLSVKAIEGSQRLV-ERAQ 193 (476)
T ss_pred CCeeEEcCCCchHHHH-HHhhccCceEEEeccchHHH-HHHH
Confidence 3589999999999996 455432 3699999997765 4443
No 390
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=55.40 E-value=1.1e+02 Score=26.65 Aligned_cols=83 Identities=17% Similarity=0.070 Sum_probs=49.2
Q ss_pred CCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH--HH-hhhcC
Q 022298 155 RPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--RA-EQFVG 227 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~--~~-~~~~~ 227 (299)
.+.++|=. .|+|.+|... +++|+ +|++++.++... ..+...+...+ .++.++.+|+.+... .. .....
T Consensus 5 ~~~~ilIt-Gasg~iG~~l~~~l~~~g~-~V~~~~r~~~~~-~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (251)
T PRK12826 5 EGRVALVT-GAARGIGRAIAVRLAADGA-EVIVVDICGDDA-AATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVE 79 (251)
T ss_pred CCCEEEEc-CCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHH
Confidence 46678744 4577777654 45677 699999997765 44555554433 236778888754321 10 00011
Q ss_pred CCCCeeEEEEcCCCC
Q 022298 228 KDGPFDYMSVTPPYT 242 (299)
Q Consensus 228 ~~~~fDlI~iDPPY~ 242 (299)
..+.+|.|+......
T Consensus 80 ~~~~~d~vi~~ag~~ 94 (251)
T PRK12826 80 DFGRLDILVANAGIF 94 (251)
T ss_pred HhCCCCEEEECCCCC
Confidence 124689999887543
No 391
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=55.36 E-value=56 Score=31.73 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=24.4
Q ss_pred CCCCEEEEECCc-cchHHHHHHH-cCCCEEEEEeCCH
Q 022298 154 LRPGRWLDLYSG-TGSVGIEAIS-RGCSEVHFVEMDP 188 (299)
Q Consensus 154 ~~~~~VLDLfaG-SGalgIEAlS-rGa~~V~~VD~n~ 188 (299)
+...+||=+||| .|+-.+..|. .|..+++.+|-|.
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 456789888776 3444444443 5888999999885
No 392
>PRK07454 short chain dehydrogenase; Provisional
Probab=55.33 E-value=1.3e+02 Score=26.28 Aligned_cols=81 Identities=14% Similarity=0.091 Sum_probs=48.4
Q ss_pred CCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---HhhhcCC
Q 022298 156 PGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFVGK 228 (299)
Q Consensus 156 ~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~~~ 228 (299)
.+++|=.| |+|.+|.++ +++|+ +|+.++.++... +.+.+.++..+ .++.++.+|+.+.... .......
T Consensus 6 ~k~vlItG-~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (241)
T PRK07454 6 MPRALITG-ASSGIGKATALAFAKAGW-DLALVARSQDAL-EALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQ 80 (241)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 44566665 567777654 45787 699999998776 55555554333 3467788887653211 1111111
Q ss_pred CCCeeEEEEcCCC
Q 022298 229 DGPFDYMSVTPPY 241 (299)
Q Consensus 229 ~~~fDlI~iDPPY 241 (299)
.++.|.++.+.-+
T Consensus 81 ~~~id~lv~~ag~ 93 (241)
T PRK07454 81 FGCPDVLINNAGM 93 (241)
T ss_pred cCCCCEEEECCCc
Confidence 2468999987644
No 393
>PRK08265 short chain dehydrogenase; Provisional
Probab=54.91 E-value=1e+02 Score=27.56 Aligned_cols=80 Identities=14% Similarity=0.105 Sum_probs=45.3
Q ss_pred CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~ 226 (299)
+.+.++|=.| |+|.+|.+. +.+|+ +|+.++.+++.+ +.+.+ ..+ .++.++.+|+.+...- .....
T Consensus 4 ~~~k~vlItG-as~gIG~~ia~~l~~~G~-~V~~~~r~~~~~-~~~~~---~~~--~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (261)
T PRK08265 4 LAGKVAIVTG-GATLIGAAVARALVAAGA-RVAIVDIDADNG-AAVAA---SLG--ERARFIATDITDDAAIERAVATVV 75 (261)
T ss_pred CCCCEEEEEC-CCChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHH---HhC--CeeEEEEecCCCHHHHHHHHHHHH
Confidence 3466777665 455566553 45687 699999988754 33322 222 3466778887543211 11111
Q ss_pred CCCCCeeEEEEcCCC
Q 022298 227 GKDGPFDYMSVTPPY 241 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY 241 (299)
...+..|+++.+.-+
T Consensus 76 ~~~g~id~lv~~ag~ 90 (261)
T PRK08265 76 ARFGRVDILVNLACT 90 (261)
T ss_pred HHhCCCCEEEECCCC
Confidence 112568999987643
No 394
>PRK07791 short chain dehydrogenase; Provisional
Probab=54.79 E-value=1e+02 Score=28.21 Aligned_cols=83 Identities=11% Similarity=0.100 Sum_probs=45.7
Q ss_pred CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCH---------HHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH
Q 022298 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDP---------WVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~---------~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~ 220 (299)
+.+.++|=.|+++ .+|.+ ++..|+ +|+.++.+. ..+ +-+.+.++..+ .++.++..|+.+...
T Consensus 4 l~~k~~lITGas~-GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~-~~~~~~l~~~~--~~~~~~~~Dv~~~~~ 78 (286)
T PRK07791 4 LDGRVVIVTGAGG-GIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAA-QAVVDEIVAAG--GEAVANGDDIADWDG 78 (286)
T ss_pred cCCCEEEEECCCc-hHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHH-HHHHHHHHhcC--CceEEEeCCCCCHHH
Confidence 3567788777655 45554 345787 588888764 443 33334443333 235667777754321
Q ss_pred H---HhhhcCCCCCeeEEEEcCCC
Q 022298 221 R---AEQFVGKDGPFDYMSVTPPY 241 (299)
Q Consensus 221 ~---~~~~~~~~~~fDlI~iDPPY 241 (299)
- ........++.|+++.+.-.
T Consensus 79 v~~~~~~~~~~~g~id~lv~nAG~ 102 (286)
T PRK07791 79 AANLVDAAVETFGGLDVLVNNAGI 102 (286)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 1 11111123578999987643
No 395
>PRK06198 short chain dehydrogenase; Provisional
Probab=54.77 E-value=1.1e+02 Score=26.91 Aligned_cols=83 Identities=16% Similarity=0.084 Sum_probs=47.2
Q ss_pred CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH--H-Hhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--R-AEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~--~-~~~~~ 226 (299)
+.++++|=.| |+|.+|..+ +.+|+..|+.++.++... ..+...+...+ .++.++..|+.+... . .....
T Consensus 4 ~~~k~vlItG-a~g~iG~~la~~l~~~G~~~V~~~~r~~~~~-~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 79 (260)
T PRK06198 4 LDGKVALVTG-GTQGLGAAIARAFAERGAAGLVICGRNAEKG-EAQAAELEALG--AKAVFVQADLSDVEDCRRVVAAAD 79 (260)
T ss_pred CCCcEEEEeC-CCchHHHHHHHHHHHCCCCeEEEEcCCHHHH-HHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHH
Confidence 4567777555 466677654 357886699999987665 44444443332 346667777654221 1 11011
Q ss_pred CCCCCeeEEEEcCC
Q 022298 227 GKDGPFDYMSVTPP 240 (299)
Q Consensus 227 ~~~~~fDlI~iDPP 240 (299)
...+..|.|+..+-
T Consensus 80 ~~~g~id~li~~ag 93 (260)
T PRK06198 80 EAFGRLDALVNAAG 93 (260)
T ss_pred HHhCCCCEEEECCC
Confidence 11246899987764
No 396
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=54.56 E-value=66 Score=33.59 Aligned_cols=87 Identities=15% Similarity=-0.004 Sum_probs=61.0
Q ss_pred CCCCEEEEECCccchHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCC
Q 022298 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlS----rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~ 229 (299)
+.+++||=- .|+|++|-|.+. .+.++++.+|.|+.++ ..++.+++..--..+...+-+|+.+...-... -.+
T Consensus 248 ~~gK~vLVT-GagGSiGsel~~qil~~~p~~i~l~~~~E~~~-~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~--~~~ 323 (588)
T COG1086 248 LTGKTVLVT-GGGGSIGSELCRQILKFNPKEIILFSRDEYKL-YLIDMELREKFPELKLRFYIGDVRDRDRVERA--MEG 323 (588)
T ss_pred cCCCEEEEe-CCCCcHHHHHHHHHHhcCCCEEEEecCchHHH-HHHHHHHHhhCCCcceEEEecccccHHHHHHH--Hhc
Confidence 356777755 567999998754 5888999999999998 78888876532133467888998776432211 123
Q ss_pred CCeeEEEEcCCCCCC
Q 022298 230 GPFDYMSVTPPYTAV 244 (299)
Q Consensus 230 ~~fDlI~iDPPY~~~ 244 (299)
-+.|+||----|..+
T Consensus 324 ~kvd~VfHAAA~KHV 338 (588)
T COG1086 324 HKVDIVFHAAALKHV 338 (588)
T ss_pred CCCceEEEhhhhccC
Confidence 468999987777653
No 397
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=54.16 E-value=1.3e+02 Score=28.12 Aligned_cols=81 Identities=6% Similarity=0.043 Sum_probs=43.1
Q ss_pred CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCH---HHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDP---WVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~---~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~ 226 (299)
..+.++|=+||| | .|.. ++..|+.+|+.++.+. +.. +.+.+.+...+ ..+.+...|+.+... ..
T Consensus 124 ~~~k~vlI~GAG-G-agrAia~~La~~G~~~V~I~~R~~~~~~~a-~~l~~~l~~~~--~~~~~~~~d~~~~~~-~~--- 194 (289)
T PRK12548 124 VKGKKLTVIGAG-G-AATAIQVQCALDGAKEITIFNIKDDFYERA-EQTAEKIKQEV--PECIVNVYDLNDTEK-LK--- 194 (289)
T ss_pred cCCCEEEEECCc-H-HHHHHHHHHHHCCCCEEEEEeCCchHHHHH-HHHHHHHhhcC--CCceeEEechhhhhH-HH---
Confidence 457788888876 4 3332 2357998899999985 333 33334443222 123344455433211 00
Q ss_pred CCCCCeeEEEEcCCCCC
Q 022298 227 GKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY~~ 243 (299)
..-..+|+|+-.=|-+.
T Consensus 195 ~~~~~~DilINaTp~Gm 211 (289)
T PRK12548 195 AEIASSDILVNATLVGM 211 (289)
T ss_pred hhhccCCEEEEeCCCCC
Confidence 00135799887666544
No 398
>PRK06138 short chain dehydrogenase; Provisional
Probab=53.96 E-value=1.4e+02 Score=25.97 Aligned_cols=83 Identities=10% Similarity=0.042 Sum_probs=48.9
Q ss_pred CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~ 226 (299)
++++++|=.|| +|.+|... +++|+ +|+.++.+.+.. .....++. . ..++.++.+|+.+...- .....
T Consensus 3 ~~~k~~lItG~-sg~iG~~la~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~-~--~~~~~~~~~D~~~~~~~~~~~~~i~ 76 (252)
T PRK06138 3 LAGRVAIVTGA-GSGIGRATAKLFAREGA-RVVVADRDAEAA-ERVAAAIA-A--GGRAFARQGDVGSAEAVEALVDFVA 76 (252)
T ss_pred CCCcEEEEeCC-CchHHHHHHHHHHHCCC-eEEEecCCHHHH-HHHHHHHh-c--CCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 35666666655 56666653 45686 599999988765 55555554 2 23467788887543211 11111
Q ss_pred CCCCCeeEEEEcCCCC
Q 022298 227 GKDGPFDYMSVTPPYT 242 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY~ 242 (299)
...+++|+|+.+..+.
T Consensus 77 ~~~~~id~vi~~ag~~ 92 (252)
T PRK06138 77 ARWGRLDVLVNNAGFG 92 (252)
T ss_pred HHcCCCCEEEECCCCC
Confidence 1125789999877653
No 399
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=53.94 E-value=1.2e+02 Score=27.35 Aligned_cols=85 Identities=11% Similarity=0.010 Sum_probs=46.3
Q ss_pred CCCCEEEEECCcc-chHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhh
Q 022298 154 LRPGRWLDLYSGT-GSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQF 225 (299)
Q Consensus 154 ~~~~~VLDLfaGS-GalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~ 225 (299)
+.++++|=.|+++ +.+|.+.+ .+|+ +|+.++.+.+.. +.+++-.+.++ ..++.++..|+.+...- ....
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~-~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~ 81 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLE-KEVRELADTLE-GQESLLLPCDVTSDEEITACFETI 81 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccch-HHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHH
Confidence 4578899888873 67776643 4687 588886543221 22222222222 13466777786543211 1111
Q ss_pred cCCCCCeeEEEEcCCC
Q 022298 226 VGKDGPFDYMSVTPPY 241 (299)
Q Consensus 226 ~~~~~~fDlI~iDPPY 241 (299)
....++.|+++.+.-+
T Consensus 82 ~~~~g~ld~lv~nag~ 97 (257)
T PRK08594 82 KEEVGVIHGVAHCIAF 97 (257)
T ss_pred HHhCCCccEEEECccc
Confidence 1223679999987644
No 400
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=53.77 E-value=1.2e+02 Score=26.95 Aligned_cols=80 Identities=18% Similarity=0.151 Sum_probs=45.9
Q ss_pred CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~ 226 (299)
+.+.++|=.|+ +|.+|.+. +.+|+ +|+.++.+++.+ +.+.+- .+ +++.++.+|+.+.... .....
T Consensus 4 ~~~k~vlVtGa-s~gIG~~ia~~l~~~G~-~V~~~~r~~~~~-~~~~~~---~~--~~~~~~~~D~~~~~~~~~~~~~~~ 75 (263)
T PRK06200 4 LHGQVALITGG-GSGIGRALVERFLAEGA-RVAVLERSAEKL-ASLRQR---FG--DHVLVVEGDVTSYADNQRAVDQTV 75 (263)
T ss_pred CCCCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHH---hC--CcceEEEccCCCHHHHHHHHHHHH
Confidence 34667777765 45556553 45687 599999988765 443322 22 2356777776543211 11111
Q ss_pred CCCCCeeEEEEcCCC
Q 022298 227 GKDGPFDYMSVTPPY 241 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY 241 (299)
...++.|+++.+.-+
T Consensus 76 ~~~g~id~li~~ag~ 90 (263)
T PRK06200 76 DAFGKLDCFVGNAGI 90 (263)
T ss_pred HhcCCCCEEEECCCC
Confidence 123578999987654
No 401
>PRK08328 hypothetical protein; Provisional
Probab=53.58 E-value=78 Score=28.69 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=24.4
Q ss_pred CCCCEEEEECCc-cchHHHHHHH-cCCCEEEEEeCCH
Q 022298 154 LRPGRWLDLYSG-TGSVGIEAIS-RGCSEVHFVEMDP 188 (299)
Q Consensus 154 ~~~~~VLDLfaG-SGalgIEAlS-rGa~~V~~VD~n~ 188 (299)
+.+.+|+=+||| .|+--++.|. .|..+++.+|.|.
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 456789888877 4555444444 5889999998553
No 402
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=53.54 E-value=31 Score=33.18 Aligned_cols=43 Identities=12% Similarity=0.058 Sum_probs=31.0
Q ss_pred CCCEEEEECCcc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHH
Q 022298 155 RPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPN 198 (299)
Q Consensus 155 ~~~~VLDLfaGS-GalgIEAlS-rGa~~V~~VD~n~~Al~~~a~~N 198 (299)
.+.+||..+||+ |.+.+.+++ +|+.+|++++.++... +.+++.
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~-~~~~~~ 228 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERL-EMARSH 228 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHc
Confidence 578999997655 555555444 5776799999998886 776653
No 403
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=53.40 E-value=1.1e+02 Score=24.87 Aligned_cols=23 Identities=26% Similarity=0.661 Sum_probs=16.3
Q ss_pred ccchHHHHHH----HcCCCEEEEEeCC
Q 022298 165 GTGSVGIEAI----SRGCSEVHFVEMD 187 (299)
Q Consensus 165 GSGalgIEAl----SrGa~~V~~VD~n 187 (299)
|.|++|.+.+ ..|..+++.+|.+
T Consensus 6 G~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 6 GLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 5566666643 3588889999877
No 404
>PRK07677 short chain dehydrogenase; Provisional
Probab=53.27 E-value=72 Score=28.24 Aligned_cols=78 Identities=13% Similarity=0.003 Sum_probs=44.4
Q ss_pred CEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH--H-HhhhcCCC
Q 022298 157 GRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--R-AEQFVGKD 229 (299)
Q Consensus 157 ~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~--~-~~~~~~~~ 229 (299)
+++|=.|+ +|.+|.. ++++|+ +|+.++.+...+ +.+.+.++..+ .++.++.+|+.+.-. . ........
T Consensus 2 k~~lItG~-s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (252)
T PRK07677 2 KVVIITGG-SSGMGKAMAKRFAEEGA-NVVITGRTKEKL-EEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKF 76 (252)
T ss_pred CEEEEeCC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 45665555 4555554 345787 699999998776 55555554433 346778887643211 1 00011112
Q ss_pred CCeeEEEEcC
Q 022298 230 GPFDYMSVTP 239 (299)
Q Consensus 230 ~~fDlI~iDP 239 (299)
+..|+++.+.
T Consensus 77 ~~id~lI~~a 86 (252)
T PRK07677 77 GRIDALINNA 86 (252)
T ss_pred CCccEEEECC
Confidence 4689998775
No 405
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.13 E-value=1.5e+02 Score=25.72 Aligned_cols=82 Identities=17% Similarity=0.132 Sum_probs=50.3
Q ss_pred CCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH---hhhcC
Q 022298 155 RPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA---EQFVG 227 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~---~~~~~ 227 (299)
.+.++|=.| |+|.+|... +++|+ +|+.++.++... +.+...++..+ .++.++.+|+.+..... .....
T Consensus 6 ~~~~vlVtG-~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (239)
T PRK07666 6 QGKNALITG-AGRGIGRAVAIALAKEGV-NVGLLARTEENL-KAVAEEVEAYG--VKVVIATADVSDYEEVTAAIEQLKN 80 (239)
T ss_pred CCCEEEEEc-CCchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHHhC--CeEEEEECCCCCHHHHHHHHHHHHH
Confidence 456777776 477778764 45687 799999998775 55555554433 34777888865432111 00011
Q ss_pred CCCCeeEEEEcCCC
Q 022298 228 KDGPFDYMSVTPPY 241 (299)
Q Consensus 228 ~~~~fDlI~iDPPY 241 (299)
..+..|.||.....
T Consensus 81 ~~~~id~vi~~ag~ 94 (239)
T PRK07666 81 ELGSIDILINNAGI 94 (239)
T ss_pred HcCCccEEEEcCcc
Confidence 12468999987654
No 406
>PRK09186 flagellin modification protein A; Provisional
Probab=53.07 E-value=1.3e+02 Score=26.34 Aligned_cols=82 Identities=16% Similarity=0.044 Sum_probs=45.6
Q ss_pred CCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---HhhhcC
Q 022298 155 RPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFVG 227 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~~ 227 (299)
.++++|=.|+ +|.+|.+. +.+|+ +|+.++.+++.+ +.+...+........+.++.+|+.+.-.- ......
T Consensus 3 ~~k~vlItGa-s~giG~~~a~~l~~~g~-~v~~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (256)
T PRK09186 3 KGKTILITGA-GGLIGSALVKAILEAGG-IVIAADIDKEAL-NELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAE 79 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCC-EEEEEecChHHH-HHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHH
Confidence 3566665555 56667654 34677 599999988776 55555553221122355667776543211 111111
Q ss_pred CCCCeeEEEEcC
Q 022298 228 KDGPFDYMSVTP 239 (299)
Q Consensus 228 ~~~~fDlI~iDP 239 (299)
..+..|+|+.+.
T Consensus 80 ~~~~id~vi~~A 91 (256)
T PRK09186 80 KYGKIDGAVNCA 91 (256)
T ss_pred HcCCccEEEECC
Confidence 124589999775
No 407
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=52.96 E-value=20 Score=35.74 Aligned_cols=79 Identities=16% Similarity=0.002 Sum_probs=50.1
Q ss_pred CCCEEEEECCccchHHHHH-HHcCCCEEEEEeCCHHHHHHHHHHHHHH-------hCC-CCcEEEEEcchhhHHHHHhhh
Q 022298 155 RPGRWLDLYSGTGSVGIEA-ISRGCSEVHFVEMDPWVVSNVLIPNLEW-------TGF-LDVSSIHTVRVETFLERAEQF 225 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEA-lSrGa~~V~~VD~n~~Al~~~a~~N~~~-------~g~-~~~~~vi~~D~~~~l~~~~~~ 225 (299)
.+..+.|||+|.|.....+ +..|+..-+|+|+..... +++..|.+. +|- .+..+.++++....-....
T Consensus 192 ~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS-~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~e-- 268 (419)
T KOG3924|consen 192 PADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPS-QCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTE-- 268 (419)
T ss_pred CCCcccCCCcccchhhHHHHHhhccccccceeeecCcH-HHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHH--
Confidence 5778999999999877654 455677788999877664 666666543 344 2446677777543321110
Q ss_pred cCCCCCeeEEEEc
Q 022298 226 VGKDGPFDYMSVT 238 (299)
Q Consensus 226 ~~~~~~fDlI~iD 238 (299)
-....++||+|
T Consensus 269 --I~~eatvi~vN 279 (419)
T KOG3924|consen 269 --IQTEATVIFVN 279 (419)
T ss_pred --HhhcceEEEEe
Confidence 02346777754
No 408
>PRK07326 short chain dehydrogenase; Provisional
Probab=52.89 E-value=1.4e+02 Score=25.93 Aligned_cols=79 Identities=14% Similarity=0.088 Sum_probs=46.7
Q ss_pred CCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---HhhhcC
Q 022298 155 RPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFVG 227 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~~ 227 (299)
.+.++|=.| |+|.+|.+++ .+|+ +|++++.++... +.+.+.+... .++.++.+|+.+.... ......
T Consensus 5 ~~~~ilItG-atg~iG~~la~~l~~~g~-~V~~~~r~~~~~-~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (237)
T PRK07326 5 KGKVALITG-GSKGIGFAIAEALLAEGY-KVAITARDQKEL-EEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVA 78 (237)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHCCC-EEEEeeCCHHHH-HHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 356677666 5777787654 4677 599999998775 5555544332 3467778876543211 111111
Q ss_pred CCCCeeEEEEcC
Q 022298 228 KDGPFDYMSVTP 239 (299)
Q Consensus 228 ~~~~fDlI~iDP 239 (299)
..+.+|+||...
T Consensus 79 ~~~~~d~vi~~a 90 (237)
T PRK07326 79 AFGGLDVLIANA 90 (237)
T ss_pred HcCCCCEEEECC
Confidence 124689988664
No 409
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=52.75 E-value=65 Score=30.70 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=28.2
Q ss_pred CCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHH
Q 022298 155 RPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIP 197 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~ 197 (299)
.+.+||=.+ .|.+|+.++ .+|+.+|+++|.++... +.+++
T Consensus 191 ~g~~VlV~G--~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~-~~a~~ 234 (371)
T cd08281 191 PGQSVAVVG--LGGVGLSALLGAVAAGASQVVAVDLNEDKL-ALARE 234 (371)
T ss_pred CCCEEEEEC--CCHHHHHHHHHHHHcCCCcEEEEcCCHHHH-HHHHH
Confidence 466777665 467776653 36887799999998876 66643
No 410
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.24 E-value=67 Score=31.56 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=41.6
Q ss_pred CCCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCH-HHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCC
Q 022298 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDP-WVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~-~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~ 228 (299)
+.+++|+=+|+|. +|.+++ .+|+ .|+++|.+. ..+ +...+.+...+ ++++.+|..+-.
T Consensus 3 ~~~k~v~iiG~g~--~G~~~A~~l~~~G~-~V~~~d~~~~~~~-~~~~~~l~~~~----~~~~~~~~~~~~--------- 65 (450)
T PRK14106 3 LKGKKVLVVGAGV--SGLALAKFLKKLGA-KVILTDEKEEDQL-KEALEELGELG----IELVLGEYPEEF--------- 65 (450)
T ss_pred cCCCEEEEECCCH--HHHHHHHHHHHCCC-EEEEEeCCchHHH-HHHHHHHHhcC----CEEEeCCcchhH---------
Confidence 3567887776665 555433 4687 599999985 332 22222333333 346666655421
Q ss_pred CCCeeEEEEcCCC
Q 022298 229 DGPFDYMSVTPPY 241 (299)
Q Consensus 229 ~~~fDlI~iDPPY 241 (299)
.+.+|+|+..|=.
T Consensus 66 ~~~~d~vv~~~g~ 78 (450)
T PRK14106 66 LEGVDLVVVSPGV 78 (450)
T ss_pred hhcCCEEEECCCC
Confidence 1468999987643
No 411
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=51.90 E-value=40 Score=26.32 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=24.1
Q ss_pred HHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCC
Q 022298 195 LIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPY 241 (299)
Q Consensus 195 a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY 241 (299)
+++-++..|++ +++...++.+.... ...+|+|++-|=.
T Consensus 19 i~~~~~~~~~~--~~v~~~~~~~~~~~-------~~~~Diil~~Pqv 56 (96)
T cd05564 19 MKKAAEKRGID--AEIEAVPESELEEY-------IDDADVVLLGPQV 56 (96)
T ss_pred HHHHHHHCCCc--eEEEEecHHHHHHh-------cCCCCEEEEChhH
Confidence 34444555663 67777777665422 3578999998843
No 412
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=51.88 E-value=1.8e+02 Score=27.07 Aligned_cols=88 Identities=15% Similarity=0.046 Sum_probs=57.4
Q ss_pred CCCCEEEEECCccc---hHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCC-CcEEEEEcchhhHH--HHHh-hhc
Q 022298 154 LRPGRWLDLYSGTG---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFL--ERAE-QFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSG---algIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~-~~~~vi~~D~~~~l--~~~~-~~~ 226 (299)
+.+..+|=-|+.+| +++.+++..|+ +|+..+.+.+.+ +.+..-+...+.. .++..+.+|+.+.- ..+. ...
T Consensus 6 l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~ 83 (270)
T KOG0725|consen 6 LAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERL-EETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAV 83 (270)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHH
Confidence 56778888887777 55566777898 599999999987 6666666655553 45667778875332 1111 111
Q ss_pred CC-CCCeeEEEEcCCCCC
Q 022298 227 GK-DGPFDYMSVTPPYTA 243 (299)
Q Consensus 227 ~~-~~~fDlI~iDPPY~~ 243 (299)
.. .++.|+++.|.-...
T Consensus 84 ~~~~GkidiLvnnag~~~ 101 (270)
T KOG0725|consen 84 EKFFGKIDILVNNAGALG 101 (270)
T ss_pred HHhCCCCCEEEEcCCcCC
Confidence 22 478999997775554
No 413
>PLN02253 xanthoxin dehydrogenase
Probab=51.79 E-value=1.4e+02 Score=26.90 Aligned_cols=81 Identities=19% Similarity=0.098 Sum_probs=46.5
Q ss_pred CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH---hhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA---EQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~---~~~~ 226 (299)
+.+.++|=.| |+|.+|.+. +++|+ +|+.++.+.+.. +-+.+.+ +...++.++++|+.+...-. ....
T Consensus 16 l~~k~~lItG-as~gIG~~la~~l~~~G~-~v~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 89 (280)
T PLN02253 16 LLGKVALVTG-GATGIGESIVRLFHKHGA-KVCIVDLQDDLG-QNVCDSL---GGEPNVCFFHCDVTVEDDVSRAVDFTV 89 (280)
T ss_pred cCCCEEEEEC-CCchHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHh---cCCCceEEEEeecCCHHHHHHHHHHHH
Confidence 3567777666 566677654 35687 699999887664 4333333 22234677888876442111 1111
Q ss_pred CCCCCeeEEEEcCC
Q 022298 227 GKDGPFDYMSVTPP 240 (299)
Q Consensus 227 ~~~~~fDlI~iDPP 240 (299)
...++.|+++.+.-
T Consensus 90 ~~~g~id~li~~Ag 103 (280)
T PLN02253 90 DKFGTLDIMVNNAG 103 (280)
T ss_pred HHhCCCCEEEECCC
Confidence 11246899987653
No 414
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=51.36 E-value=1.6e+02 Score=26.03 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=48.9
Q ss_pred CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH---hhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA---EQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~---~~~~ 226 (299)
+.+.++|=.|+ +|.+|.+. +.+|+ +++.++.+...+ +.+...++..+ .++.++..|+.+...-. ....
T Consensus 9 l~~k~vlVtG~-s~gIG~~la~~l~~~G~-~vv~~~r~~~~~-~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~ 83 (255)
T PRK06113 9 LDGKCAIITGA-GAGIGKEIAITFATAGA-SVVVSDINADAA-NHVVDEIQQLG--GQAFACRCDITSEQELSALADFAL 83 (255)
T ss_pred cCCCEEEEECC-CchHHHHHHHHHHHCCC-eEEEEeCCHHHH-HHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHH
Confidence 45778888875 55566653 34677 588889887776 55555454433 23667788876443111 0011
Q ss_pred CCCCCeeEEEEcCCC
Q 022298 227 GKDGPFDYMSVTPPY 241 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY 241 (299)
...+.+|.++.+.-+
T Consensus 84 ~~~~~~d~li~~ag~ 98 (255)
T PRK06113 84 SKLGKVDILVNNAGG 98 (255)
T ss_pred HHcCCCCEEEECCCC
Confidence 112568999887654
No 415
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=51.18 E-value=69 Score=30.77 Aligned_cols=24 Identities=33% Similarity=0.850 Sum_probs=18.5
Q ss_pred ccchHHHHHHH----cCCCEEEEEeCCH
Q 022298 165 GTGSVGIEAIS----RGCSEVHFVEMDP 188 (299)
Q Consensus 165 GSGalgIEAlS----rGa~~V~~VD~n~ 188 (299)
|.|++|.|.+. .|..+++.+|.|.
T Consensus 6 GaGGlG~EiaKnLal~Gvg~ItIvD~D~ 33 (312)
T cd01489 6 GAGGIGCELLKNLVLTGFGEIHIIDLDT 33 (312)
T ss_pred CCCHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 66788888653 5888999999654
No 416
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=50.94 E-value=62 Score=24.31 Aligned_cols=50 Identities=24% Similarity=0.303 Sum_probs=35.0
Q ss_pred EEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEc
Q 022298 181 VHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVT 238 (299)
Q Consensus 181 V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iD 238 (299)
|..||-++... +.++.-++..|+.. + ....+..+.+.... ...||+|++|
T Consensus 1 Ilivd~~~~~~-~~l~~~l~~~~~~~-v-~~~~~~~~~~~~~~-----~~~~d~iiid 50 (112)
T PF00072_consen 1 ILIVDDDPEIR-ELLEKLLERAGYEE-V-TTASSGEEALELLK-----KHPPDLIIID 50 (112)
T ss_dssp EEEEESSHHHH-HHHHHHHHHTTEEE-E-EEESSHHHHHHHHH-----HSTESEEEEE
T ss_pred cEEEECCHHHH-HHHHHHHHhCCCCE-E-EEECCHHHHHHHhc-----ccCceEEEEE
Confidence 46789999986 88988888666521 2 24466666665543 3569999999
No 417
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=50.72 E-value=1.7e+02 Score=25.76 Aligned_cols=83 Identities=16% Similarity=0.127 Sum_probs=48.5
Q ss_pred CCCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~ 226 (299)
+.+.++|=.| |+|.+|...+ ..|+ +|+.++.++..+ +.+...++..+ .++.++.+|+.+...- .....
T Consensus 7 l~~k~~lItG-as~giG~~ia~~L~~~G~-~vvl~~r~~~~~-~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~ 81 (254)
T PRK08085 7 LAGKNILITG-SAQGIGFLLATGLAEYGA-EIIINDITAERA-ELAVAKLRQEG--IKAHAAPFNVTHKQEVEAAIEHIE 81 (254)
T ss_pred CCCCEEEEEC-CCChHHHHHHHHHHHcCC-EEEEEcCCHHHH-HHHHHHHHhcC--CeEEEEecCCCCHHHHHHHHHHHH
Confidence 3466777665 5566666543 4676 699999988775 55555555433 2356677776543211 11111
Q ss_pred CCCCCeeEEEEcCCC
Q 022298 227 GKDGPFDYMSVTPPY 241 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY 241 (299)
...+.+|+|+.+.-+
T Consensus 82 ~~~~~id~vi~~ag~ 96 (254)
T PRK08085 82 KDIGPIDVLINNAGI 96 (254)
T ss_pred HhcCCCCEEEECCCc
Confidence 123568999987754
No 418
>PRK05650 short chain dehydrogenase; Provisional
Probab=50.63 E-value=1.7e+02 Score=26.19 Aligned_cols=79 Identities=11% Similarity=0.067 Sum_probs=46.0
Q ss_pred EEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH--HH-hhhcCCCC
Q 022298 158 RWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--RA-EQFVGKDG 230 (299)
Q Consensus 158 ~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~--~~-~~~~~~~~ 230 (299)
++|=.| |+|.+|.+. +++|+ +|+.++.+.... +.+...++..+ +++.++.+|+.+... .. .......+
T Consensus 2 ~vlVtG-asggIG~~la~~l~~~g~-~V~~~~r~~~~~-~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 76 (270)
T PRK05650 2 RVMITG-AASGLGRAIALRWAREGW-RLALADVNEEGG-EETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWG 76 (270)
T ss_pred EEEEec-CCChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 345444 566666654 45687 599999988776 55555555443 346678888754321 10 00111125
Q ss_pred CeeEEEEcCCC
Q 022298 231 PFDYMSVTPPY 241 (299)
Q Consensus 231 ~fDlI~iDPPY 241 (299)
.+|+++.+.-.
T Consensus 77 ~id~lI~~ag~ 87 (270)
T PRK05650 77 GIDVIVNNAGV 87 (270)
T ss_pred CCCEEEECCCC
Confidence 78999987654
No 419
>PRK09291 short chain dehydrogenase; Provisional
Probab=50.23 E-value=1.7e+02 Score=25.62 Aligned_cols=76 Identities=14% Similarity=0.095 Sum_probs=45.6
Q ss_pred EEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 158 RWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 158 ~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
++|=. .|||.+|...+ .+|+ +|+++..++... +.+.......+. .+.++.+|+.+...... . .....|
T Consensus 4 ~vlVt-Gasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~-~--~~~~id 75 (257)
T PRK09291 4 TILIT-GAGSGFGREVALRLARKGH-NVIAGVQIAPQV-TALRAEAARRGL--ALRVEKLDLTDAIDRAQ-A--AEWDVD 75 (257)
T ss_pred EEEEe-CCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcCC--cceEEEeeCCCHHHHHH-H--hcCCCC
Confidence 45544 45677776643 4676 588988887765 555554444443 36778888765432211 1 124789
Q ss_pred EEEEcCCC
Q 022298 234 YMSVTPPY 241 (299)
Q Consensus 234 lI~iDPPY 241 (299)
+||.+.-+
T Consensus 76 ~vi~~ag~ 83 (257)
T PRK09291 76 VLLNNAGI 83 (257)
T ss_pred EEEECCCc
Confidence 99987543
No 420
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=50.19 E-value=22 Score=33.26 Aligned_cols=45 Identities=16% Similarity=0.078 Sum_probs=31.4
Q ss_pred CCCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH
Q 022298 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~ 199 (299)
+.+.++||+|||.-..-+-.+++-+.++++.|..+... +.+++=+
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~-~el~kWl 99 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNR-EELEKWL 99 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHH-HHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhH-HHHHHHH
Confidence 56789999999996665545556678899999999886 6555544
No 421
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=50.16 E-value=22 Score=32.51 Aligned_cols=45 Identities=20% Similarity=0.334 Sum_probs=31.7
Q ss_pred CCEEEEECCccchHHHHHHHc---------CCCEEEEEeCCHHHHHHHHHHHHHH
Q 022298 156 PGRWLDLYSGTGSVGIEAISR---------GCSEVHFVEMDPWVVSNVLIPNLEW 201 (299)
Q Consensus 156 ~~~VLDLfaGSGalgIEAlSr---------Ga~~V~~VD~n~~Al~~~a~~N~~~ 201 (299)
..+++++|+|+|.++.-.+.. ..-+.+.||.++... +.-++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~-~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLR-ERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCH-HHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHH-HHHHHHhhh
Confidence 369999999999999876641 124799999999875 666666543
No 422
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=49.53 E-value=1.1e+02 Score=28.13 Aligned_cols=25 Identities=32% Similarity=0.755 Sum_probs=18.5
Q ss_pred ccchHHHHHHH----cCCCEEEEEeCCHH
Q 022298 165 GTGSVGIEAIS----RGCSEVHFVEMDPW 189 (299)
Q Consensus 165 GSGalgIEAlS----rGa~~V~~VD~n~~ 189 (299)
|.|++|.|.+. .|..+++.+|.|.-
T Consensus 6 G~GGlG~eilk~La~~Gvg~i~ivD~D~V 34 (234)
T cd01484 6 GAGGIGCELLKNLALMGFGQIHVIDMDTI 34 (234)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 67788877653 58888999887653
No 423
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=49.40 E-value=78 Score=31.47 Aligned_cols=73 Identities=15% Similarity=0.084 Sum_probs=44.0
Q ss_pred EEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCee
Q 022298 158 RWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (299)
Q Consensus 158 ~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fD 233 (299)
++|=+|| |.+|-.+ +.+|..+|+..|.+++.+ +.+..+... +++..+.|+.+.-.....+ ..+|
T Consensus 3 ~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~-~~i~~~~~~-----~v~~~~vD~~d~~al~~li----~~~d 70 (389)
T COG1748 3 KILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKC-ARIAELIGG-----KVEALQVDAADVDALVALI----KDFD 70 (389)
T ss_pred cEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHH-HHHHhhccc-----cceeEEecccChHHHHHHH----hcCC
Confidence 5677777 5555443 346767899999999886 666555321 4666777766543221111 3568
Q ss_pred EEEEcCCCC
Q 022298 234 YMSVTPPYT 242 (299)
Q Consensus 234 lI~iDPPY~ 242 (299)
+|+.--|+.
T Consensus 71 ~VIn~~p~~ 79 (389)
T COG1748 71 LVINAAPPF 79 (389)
T ss_pred EEEEeCCch
Confidence 888544443
No 424
>PRK07024 short chain dehydrogenase; Provisional
Probab=49.20 E-value=1.3e+02 Score=26.62 Aligned_cols=76 Identities=13% Similarity=0.125 Sum_probs=43.0
Q ss_pred EEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---HhhhcCCCC
Q 022298 158 RWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFVGKDG 230 (299)
Q Consensus 158 ~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~~~~~ 230 (299)
++|=.| |+|.+|.+. +++|+ +|+.++.+++.+ +.+.+.+... .++.++.+|+.+...- ........+
T Consensus 4 ~vlItG-as~gIG~~la~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~---~~~~~~~~Dl~~~~~i~~~~~~~~~~~g 77 (257)
T PRK07024 4 KVFITG-ASSGIGQALAREYARQGA-TLGLVARRTDAL-QAFAARLPKA---ARVSVYAADVRDADALAAAAADFIAAHG 77 (257)
T ss_pred EEEEEc-CCcHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHhcccC---CeeEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 444444 466777664 35687 699999998776 5444433221 1467788887543211 111111234
Q ss_pred CeeEEEEcC
Q 022298 231 PFDYMSVTP 239 (299)
Q Consensus 231 ~fDlI~iDP 239 (299)
..|+++.+.
T Consensus 78 ~id~lv~~a 86 (257)
T PRK07024 78 LPDVVIANA 86 (257)
T ss_pred CCCEEEECC
Confidence 689999765
No 425
>PRK06057 short chain dehydrogenase; Provisional
Probab=48.97 E-value=1.3e+02 Score=26.66 Aligned_cols=78 Identities=13% Similarity=0.036 Sum_probs=43.3
Q ss_pred CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHH---HHHhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL---ERAEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l---~~~~~~~ 226 (299)
+.+.++|=.|+ +|.+|... +++|+ +|+.++.++... +...+.+ +. .++++|+.+.. .......
T Consensus 5 ~~~~~vlItGa-sggIG~~~a~~l~~~G~-~v~~~~r~~~~~-~~~~~~~---~~----~~~~~D~~~~~~~~~~~~~~~ 74 (255)
T PRK06057 5 LAGRVAVITGG-GSGIGLATARRLAAEGA-TVVVGDIDPEAG-KAAADEV---GG----LFVPTDVTDEDAVNALFDTAA 74 (255)
T ss_pred CCCCEEEEECC-CchHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHc---CC----cEEEeeCCCHHHHHHHHHHHH
Confidence 45778887776 45666654 35687 599999987764 4333332 21 24555554321 1111111
Q ss_pred CCCCCeeEEEEcCCC
Q 022298 227 GKDGPFDYMSVTPPY 241 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY 241 (299)
...+++|.|+.+.-+
T Consensus 75 ~~~~~id~vi~~ag~ 89 (255)
T PRK06057 75 ETYGSVDIAFNNAGI 89 (255)
T ss_pred HHcCCCCEEEECCCc
Confidence 112568999987754
No 426
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=48.84 E-value=23 Score=37.30 Aligned_cols=54 Identities=22% Similarity=0.103 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHH-cCC-CEEEEEeCCHH
Q 022298 136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGC-SEVHFVEMDPW 189 (299)
Q Consensus 136 Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlS-rGa-~~V~~VD~n~~ 189 (299)
..++.|..|+........-.+..||||||..|+..--|.. .+. +-|++||+-|-
T Consensus 25 rsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 25 RSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred hHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 4567778776532111123467899999999998766653 442 35999998763
No 427
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=48.82 E-value=76 Score=30.18 Aligned_cols=67 Identities=19% Similarity=0.210 Sum_probs=38.9
Q ss_pred ccchHHHHHHH----cCCCEEEEEeCCHHHH------------------HHHHHHHHHHhCCCCcEEEEEcchhhHHHHH
Q 022298 165 GTGSVGIEAIS----RGCSEVHFVEMDPWVV------------------SNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222 (299)
Q Consensus 165 GSGalgIEAlS----rGa~~V~~VD~n~~Al------------------~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~ 222 (299)
|.|++|.|.+. .|..+++.+|.|.-.. .+.+.+.++..+-.-+++.+..++.++....
T Consensus 6 GaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~~~~~f 85 (291)
T cd01488 6 GAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQDKDEEF 85 (291)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCchhHHH
Confidence 66788888653 5888999998764321 0345555555443223455555554432221
Q ss_pred hhhcCCCCCeeEEEE
Q 022298 223 EQFVGKDGPFDYMSV 237 (299)
Q Consensus 223 ~~~~~~~~~fDlI~i 237 (299)
-..||+|+.
T Consensus 86 ------~~~fdvVi~ 94 (291)
T cd01488 86 ------YRQFNIIIC 94 (291)
T ss_pred ------hcCCCEEEE
Confidence 157999885
No 428
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=48.77 E-value=1.7e+02 Score=25.50 Aligned_cols=81 Identities=12% Similarity=-0.018 Sum_probs=45.8
Q ss_pred CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH---hhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA---EQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~---~~~~ 226 (299)
+.++++|=.|++ |.+|.. ++++|+ +|+.++.+.. ..+.+.++..+ ..+.++..|+.+..... ....
T Consensus 3 ~~~k~vlItGas-~gIG~~ia~~l~~~G~-~vi~~~r~~~---~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 75 (248)
T TIGR01832 3 LEGKVALVTGAN-TGLGQGIAVGLAEAGA-DIVGAGRSEP---SETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAV 75 (248)
T ss_pred CCCCEEEEECCC-chHHHHHHHHHHHCCC-EEEEEcCchH---HHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHH
Confidence 457788877764 445654 345787 6999988652 22333444333 34677788865432111 1111
Q ss_pred CCCCCeeEEEEcCCC
Q 022298 227 GKDGPFDYMSVTPPY 241 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY 241 (299)
...+..|+++.+.-+
T Consensus 76 ~~~~~~d~li~~ag~ 90 (248)
T TIGR01832 76 EEFGHIDILVNNAGI 90 (248)
T ss_pred HHcCCCCEEEECCCC
Confidence 112468999987644
No 429
>PRK07060 short chain dehydrogenase; Provisional
Probab=48.77 E-value=1.3e+02 Score=26.24 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=44.5
Q ss_pred CCCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCC
Q 022298 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~ 229 (299)
+.+.++| +..|+|.+|...+ ++|+ +|+.++.+++.+ +.+.+. .+ ..++.+|+.+... ........
T Consensus 7 ~~~~~~l-ItGa~g~iG~~~a~~l~~~g~-~V~~~~r~~~~~-~~~~~~---~~----~~~~~~D~~~~~~-v~~~~~~~ 75 (245)
T PRK07060 7 FSGKSVL-VTGASSGIGRACAVALAQRGA-RVVAAARNAAAL-DRLAGE---TG----CEPLRLDVGDDAA-IRAALAAA 75 (245)
T ss_pred cCCCEEE-EeCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHH---hC----CeEEEecCCCHHH-HHHHHHHh
Confidence 4566777 5666677776643 4677 699999988765 433322 22 2355666654321 11111112
Q ss_pred CCeeEEEEcCCCC
Q 022298 230 GPFDYMSVTPPYT 242 (299)
Q Consensus 230 ~~fDlI~iDPPY~ 242 (299)
+++|+||.+..+.
T Consensus 76 ~~~d~vi~~ag~~ 88 (245)
T PRK07060 76 GAFDGLVNCAGIA 88 (245)
T ss_pred CCCCEEEECCCCC
Confidence 4689999877553
No 430
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=48.57 E-value=87 Score=27.45 Aligned_cols=82 Identities=13% Similarity=0.111 Sum_probs=49.6
Q ss_pred CCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH---hhhcC
Q 022298 155 RPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA---EQFVG 227 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~---~~~~~ 227 (299)
.+.++| +..|||.+|.+.+ ++|+ +|+.++.++... +.+...++..+ .++.++.+|+.+...-. ..+..
T Consensus 3 ~~~~vl-ItG~sg~iG~~la~~l~~~g~-~v~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 77 (258)
T PRK12429 3 KGKVAL-VTGAASGIGLEIALALAKEGA-KVVIADLNDEAA-AAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVE 77 (258)
T ss_pred CCCEEE-EECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHH-HHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 345666 5566888888754 4676 699999998876 66655555443 34677888865432110 00111
Q ss_pred CCCCeeEEEEcCCC
Q 022298 228 KDGPFDYMSVTPPY 241 (299)
Q Consensus 228 ~~~~fDlI~iDPPY 241 (299)
..+.+|+|+.+--+
T Consensus 78 ~~~~~d~vi~~a~~ 91 (258)
T PRK12429 78 TFGGVDILVNNAGI 91 (258)
T ss_pred HcCCCCEEEECCCC
Confidence 12468999876543
No 431
>PLN02740 Alcohol dehydrogenase-like
Probab=48.51 E-value=94 Score=29.81 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=29.2
Q ss_pred CCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHH
Q 022298 155 RPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIP 197 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~ 197 (299)
.+.+||=.+ .|.+|+.++ .+|+.+|+++|.+++.+ +.+++
T Consensus 198 ~g~~VlV~G--~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~-~~a~~ 241 (381)
T PLN02740 198 AGSSVAIFG--LGAVGLAVAEGARARGASKIIGVDINPEKF-EKGKE 241 (381)
T ss_pred CCCEEEEEC--CCHHHHHHHHHHHHCCCCcEEEEcCChHHH-HHHHH
Confidence 467787774 478887654 36887799999998876 66643
No 432
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=48.18 E-value=1.7e+02 Score=25.82 Aligned_cols=80 Identities=18% Similarity=0.150 Sum_probs=44.4
Q ss_pred CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH---HHhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~---~~~~~~ 226 (299)
+.++++|=.|+ +|.+|.+ ++.+|+ +|+.++.++.. ..+.+.+...+ ..+.++.+|+.+... ......
T Consensus 6 ~~~k~vlVtGa-s~gIG~~la~~l~~~G~-~v~~~~r~~~~--~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 79 (260)
T PRK12823 6 FAGKVVVVTGA-AQGIGRGVALRAAAEGA-RVVLVDRSELV--HEVAAELRAAG--GEALALTADLETYAGAQAAMAAAV 79 (260)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCchHH--HHHHHHHHhcC--CeEEEEEEeCCCHHHHHHHHHHHH
Confidence 34667776665 4555554 345787 59999998643 33444444333 235667777654321 111111
Q ss_pred CCCCCeeEEEEcC
Q 022298 227 GKDGPFDYMSVTP 239 (299)
Q Consensus 227 ~~~~~fDlI~iDP 239 (299)
...+.+|+++.+-
T Consensus 80 ~~~~~id~lv~nA 92 (260)
T PRK12823 80 EAFGRIDVLINNV 92 (260)
T ss_pred HHcCCCeEEEECC
Confidence 1235789998765
No 433
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=48.17 E-value=96 Score=30.36 Aligned_cols=34 Identities=21% Similarity=0.450 Sum_probs=23.5
Q ss_pred CCCCEEEEECCc-cchHHHHHHH-cCCCEEEEEeCC
Q 022298 154 LRPGRWLDLYSG-TGSVGIEAIS-RGCSEVHFVEMD 187 (299)
Q Consensus 154 ~~~~~VLDLfaG-SGalgIEAlS-rGa~~V~~VD~n 187 (299)
+...+||=+||| .|+..+..|. .|..+++.+|-|
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 457788888776 3444444443 488899999988
No 434
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=48.16 E-value=1.3e+02 Score=26.76 Aligned_cols=76 Identities=12% Similarity=0.066 Sum_probs=43.8
Q ss_pred EEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH--H-HhhhcCCCCC
Q 022298 159 WLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--R-AEQFVGKDGP 231 (299)
Q Consensus 159 VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~--~-~~~~~~~~~~ 231 (299)
+|=.|+ +|.+|.+. +.+|+ +|+.++.++..+ +.+.+.++..+ .+.++.+|+.+... . ........+.
T Consensus 3 vlItGa-s~gIG~aia~~l~~~G~-~V~~~~r~~~~~-~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~~g~ 76 (259)
T PRK08340 3 VLVTAS-SRGIGFNVARELLKKGA-RVVISSRNEENL-EKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWELLGG 76 (259)
T ss_pred EEEEcC-CcHHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 444444 45566553 45787 599999998876 55555554332 35677788653221 1 1111112357
Q ss_pred eeEEEEcCC
Q 022298 232 FDYMSVTPP 240 (299)
Q Consensus 232 fDlI~iDPP 240 (299)
.|+++.+.-
T Consensus 77 id~li~naG 85 (259)
T PRK08340 77 IDALVWNAG 85 (259)
T ss_pred CCEEEECCC
Confidence 899997764
No 435
>PRK12939 short chain dehydrogenase; Provisional
Probab=48.08 E-value=1e+02 Score=26.87 Aligned_cols=81 Identities=16% Similarity=0.100 Sum_probs=48.3
Q ss_pred CCCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH---hhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA---EQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~---~~~~ 226 (299)
..+.++| +..|+|.+|.+.+ ++|+ +|++++.+++.+ +.+.+.++..+ .++.++.+|+.+..... ....
T Consensus 5 ~~~~~vl-ItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~ 79 (250)
T PRK12939 5 LAGKRAL-VTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEA-RELAAALEAAG--GRAHAIAADLADPASVQRFFDAAA 79 (250)
T ss_pred CCCCEEE-EeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHH
Confidence 3466777 5556788887753 4677 588999988875 55555554333 34777888875432111 0001
Q ss_pred CCCCCeeEEEEcC
Q 022298 227 GKDGPFDYMSVTP 239 (299)
Q Consensus 227 ~~~~~fDlI~iDP 239 (299)
...++.|.|+...
T Consensus 80 ~~~~~id~vi~~a 92 (250)
T PRK12939 80 AALGGLDGLVNNA 92 (250)
T ss_pred HHcCCCCEEEECC
Confidence 1124689988664
No 436
>PRK05872 short chain dehydrogenase; Provisional
Probab=47.80 E-value=1.2e+02 Score=27.90 Aligned_cols=82 Identities=20% Similarity=0.179 Sum_probs=46.7
Q ss_pred CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~ 226 (299)
+.+.++|=.| |+|.+|.++ +.+|+ +|+.++.+++.+ +.+.+.+ +....+..+.+|+.+...- .....
T Consensus 7 l~gk~vlItG-as~gIG~~ia~~l~~~G~-~V~~~~r~~~~l-~~~~~~l---~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 80 (296)
T PRK05872 7 LAGKVVVVTG-AARGIGAELARRLHARGA-KLALVDLEEAEL-AALAAEL---GGDDRVLTVVADVTDLAAMQAAAEEAV 80 (296)
T ss_pred CCCCEEEEEC-CCchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHh---cCCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 4577888655 455666654 35687 699999998876 5444433 2122344555776543211 11111
Q ss_pred CCCCCeeEEEEcCCC
Q 022298 227 GKDGPFDYMSVTPPY 241 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY 241 (299)
...++.|+++.+.-.
T Consensus 81 ~~~g~id~vI~nAG~ 95 (296)
T PRK05872 81 ERFGGIDVVVANAGI 95 (296)
T ss_pred HHcCCCCEEEECCCc
Confidence 122578999988754
No 437
>PRK10904 DNA adenine methylase; Provisional
Probab=47.77 E-value=26 Score=32.62 Aligned_cols=32 Identities=16% Similarity=0.305 Sum_probs=25.9
Q ss_pred CEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHH
Q 022298 157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVV 191 (299)
Q Consensus 157 ~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al 191 (299)
.+.+|+|||+|++.+. + ...+++.-|+|++.+
T Consensus 29 ~~yvEPF~GggaV~l~-~--~~~~~ilND~n~~Li 60 (271)
T PRK10904 29 ECLIEPFVGAGSVFLN-T--DFSRYILADINSDLI 60 (271)
T ss_pred CcEEeccCCcceeeEe-c--CCCeEEEEeCCHHHH
Confidence 5899999999999984 2 235688889999865
No 438
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=47.59 E-value=29 Score=31.52 Aligned_cols=76 Identities=18% Similarity=0.013 Sum_probs=47.8
Q ss_pred CCCEEEEECCccchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEc-chhhHHHHHhhh-cCCCC
Q 022298 155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV-RVETFLERAEQF-VGKDG 230 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSr--Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~-D~~~~l~~~~~~-~~~~~ 230 (299)
++.+|||+||..|+.+--|..+ ....|.+||+-+-. ...+ .+++++ |+.+.......+ ..++.
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~------------p~~G-a~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE------------PPEG-ATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc------------CCCC-cccccccccCCHHHHHHHHHhCCCC
Confidence 5889999999999999888775 23459999985422 1112 344554 554433221111 11356
Q ss_pred CeeEEEEcCCCCC
Q 022298 231 PFDYMSVTPPYTA 243 (299)
Q Consensus 231 ~fDlI~iDPPY~~ 243 (299)
+.|+|+.|.--+.
T Consensus 136 ~VdvVlSDMapna 148 (232)
T KOG4589|consen 136 PVDVVLSDMAPNA 148 (232)
T ss_pred cccEEEeccCCCC
Confidence 8999999985443
No 439
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=47.50 E-value=23 Score=34.78 Aligned_cols=59 Identities=8% Similarity=-0.077 Sum_probs=37.8
Q ss_pred CCCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022298 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR 214 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D 214 (299)
++..++|++||.|-...+...-+...+++++.|+.-+ .....-.....+.++..++.+|
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~-~~~~~~~~~~~l~~k~~~~~~~ 168 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEA-FRANELAKKAYLDNKCNFVVAD 168 (364)
T ss_pred ccccccccCcCcCchhHHHHHhccCCccCCCcCHHHH-HHHHHHHHHHHhhhhcceehhh
Confidence 4668999999999999887665545699999988754 3332222223344444444334
No 440
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=47.07 E-value=25 Score=33.18 Aligned_cols=62 Identities=21% Similarity=0.155 Sum_probs=33.6
Q ss_pred CEEEEECCccchHH--HHHHH--cCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH
Q 022298 157 GRWLDLYSGTGSVG--IEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220 (299)
Q Consensus 157 ~~VLDLfaGSGalg--IEAlS--rGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~ 220 (299)
..+||+|||-=+.+ -|.+. .-..+|+.||.||-++ ...+.=+..+.- ++..++++|+.+.-.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~-ah~ralL~~~~~-g~t~~v~aD~r~p~~ 135 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVL-AHARALLADNPR-GRTAYVQADLRDPEA 135 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHH-HCCHHHHTT-TT-SEEEEEE--TT-HHH
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHH-HHHHhhhcCCCC-ccEEEEeCCCCCHHH
Confidence 47999999965322 23332 2234799999999886 666655443321 247899999876543
No 441
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=46.85 E-value=1e+02 Score=29.07 Aligned_cols=39 Identities=26% Similarity=0.228 Sum_probs=28.5
Q ss_pred CCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHH
Q 022298 155 RPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLI 196 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~ 196 (299)
.+.+||=.+ .|.+|..++ .+|+.+|+++|.++... +.++
T Consensus 176 ~g~~VlV~G--~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~-~~~~ 218 (358)
T TIGR03451 176 RGDSVAVIG--CGGVGDAAIAGAALAGASKIIAVDIDDRKL-EWAR 218 (358)
T ss_pred CCCEEEEEC--CCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHH
Confidence 477888764 477887654 35887799999998876 6664
No 442
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=46.71 E-value=1.6e+02 Score=26.21 Aligned_cols=82 Identities=11% Similarity=0.071 Sum_probs=46.8
Q ss_pred CCCCEEEEECCcc-chHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhh
Q 022298 154 LRPGRWLDLYSGT-GSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQF 225 (299)
Q Consensus 154 ~~~~~VLDLfaGS-GalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~ 225 (299)
+.++++|=.|+++ +.+|.+. +.+|+ +|+.++.+.+.. +.+++.. + ..+.+++.|+.+...- ....
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~-~~~~~~~---~--~~~~~~~~Dl~~~~~v~~~~~~~ 77 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMK-KSLQKLV---D--EEDLLVECDVASDESIERAFATI 77 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHH-HHHHhhc---c--CceeEEeCCCCCHHHHHHHHHHH
Confidence 4578899888874 4566543 45687 588888875443 3333221 1 2366778887543211 1111
Q ss_pred cCCCCCeeEEEEcCCCC
Q 022298 226 VGKDGPFDYMSVTPPYT 242 (299)
Q Consensus 226 ~~~~~~fDlI~iDPPY~ 242 (299)
....+++|+++.+.-+.
T Consensus 78 ~~~~g~iD~lv~nAg~~ 94 (252)
T PRK06079 78 KERVGKIDGIVHAIAYA 94 (252)
T ss_pred HHHhCCCCEEEEccccc
Confidence 11235789999887543
No 443
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=46.35 E-value=1.7e+02 Score=26.03 Aligned_cols=81 Identities=14% Similarity=-0.007 Sum_probs=45.1
Q ss_pred CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH---hhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA---EQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~---~~~~ 226 (299)
+.++++|-.|| +|.+|.+. +++|+ +|+.++.+.. +.+.+.++..+ .++.++..|+.+...-. ....
T Consensus 6 l~~k~~lItGa-s~gIG~aia~~l~~~G~-~vv~~~~~~~---~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~ 78 (251)
T PRK12481 6 LNGKVAIITGC-NTGLGQGMAIGLAKAGA-DIVGVGVAEA---PETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAV 78 (251)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEecCchH---HHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHH
Confidence 45778887765 45566553 45687 5888876542 22334444443 34667788865432111 1111
Q ss_pred CCCCCeeEEEEcCCC
Q 022298 227 GKDGPFDYMSVTPPY 241 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY 241 (299)
...++.|+++.+.-.
T Consensus 79 ~~~g~iD~lv~~ag~ 93 (251)
T PRK12481 79 EVMGHIDILINNAGI 93 (251)
T ss_pred HHcCCCCEEEECCCc
Confidence 123578999987644
No 444
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=46.24 E-value=1.3e+02 Score=27.54 Aligned_cols=35 Identities=23% Similarity=0.410 Sum_probs=23.4
Q ss_pred CCCCEEEEECCc-cchHHHHHHH-cCCCEEEEEeCCH
Q 022298 154 LRPGRWLDLYSG-TGSVGIEAIS-RGCSEVHFVEMDP 188 (299)
Q Consensus 154 ~~~~~VLDLfaG-SGalgIEAlS-rGa~~V~~VD~n~ 188 (299)
+...+|+=+||| .|+-.+..|. .|..+++.+|-|.
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 457889888775 3444444444 4888899987764
No 445
>PRK05599 hypothetical protein; Provisional
Probab=46.18 E-value=1.7e+02 Score=25.94 Aligned_cols=79 Identities=16% Similarity=0.111 Sum_probs=45.6
Q ss_pred EEEECCccchHHHHHH---HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---HhhhcCCCCCe
Q 022298 159 WLDLYSGTGSVGIEAI---SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFVGKDGPF 232 (299)
Q Consensus 159 VLDLfaGSGalgIEAl---SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~~~~~~f 232 (299)
+|=.|+ ++.+|.+.+ ..|+ +|+.++.+.+.+ +.+.+.++..+- +.+.++.+|+.+...- ........++.
T Consensus 3 vlItGa-s~GIG~aia~~l~~g~-~Vil~~r~~~~~-~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 78 (246)
T PRK05599 3 ILILGG-TSDIAGEIATLLCHGE-DVVLAARRPEAA-QGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQELAGEI 78 (246)
T ss_pred EEEEeC-ccHHHHHHHHHHhCCC-EEEEEeCCHHHH-HHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHhcCCC
Confidence 454444 455665543 3565 699999988876 666666655442 2356777776543211 11111223578
Q ss_pred eEEEEcCCC
Q 022298 233 DYMSVTPPY 241 (299)
Q Consensus 233 DlI~iDPPY 241 (299)
|+++.+.-+
T Consensus 79 d~lv~nag~ 87 (246)
T PRK05599 79 SLAVVAFGI 87 (246)
T ss_pred CEEEEecCc
Confidence 999987644
No 446
>PRK07832 short chain dehydrogenase; Provisional
Probab=46.02 E-value=1.4e+02 Score=26.75 Aligned_cols=76 Identities=12% Similarity=0.174 Sum_probs=43.0
Q ss_pred CCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---HhhhcCCCCCeeEE
Q 022298 163 YSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFVGKDGPFDYM 235 (299)
Q Consensus 163 faGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~~~~~~fDlI 235 (299)
..|+|.+|.++ +++|+ +|+.++.+.+.+ +.+.+.++..+- +...++.+|+.+...- ........++.|++
T Consensus 6 tGas~giG~~la~~la~~G~-~vv~~~r~~~~~-~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~l 82 (272)
T PRK07832 6 TGAASGIGRATALRLAAQGA-ELFLTDRDADGL-AQTVADARALGG-TVPEHRALDISDYDAVAAFAADIHAAHGSMDVV 82 (272)
T ss_pred eCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcCC-CcceEEEeeCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 45577777764 45687 589999988776 555555554432 2234456676432210 11111123568999
Q ss_pred EEcCCC
Q 022298 236 SVTPPY 241 (299)
Q Consensus 236 ~iDPPY 241 (299)
+.+.-.
T Consensus 83 v~~ag~ 88 (272)
T PRK07832 83 MNIAGI 88 (272)
T ss_pred EECCCC
Confidence 987743
No 447
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=45.78 E-value=1.5e+02 Score=26.96 Aligned_cols=82 Identities=18% Similarity=0.134 Sum_probs=45.0
Q ss_pred CCCCEEEEECCcc-chHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH---HHhhh
Q 022298 154 LRPGRWLDLYSGT-GSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQF 225 (299)
Q Consensus 154 ~~~~~VLDLfaGS-GalgIE----AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~---~~~~~ 225 (299)
+.++++|=.|+++ +.+|.+ ++..|+ +|+.++.+.... +.+++-.+..+. ...+.+|+.+... .....
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~-~~~~~~~~~~g~---~~~~~~Dv~d~~~v~~~~~~~ 79 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALG-KRVKPLAESLGS---DFVLPCDVEDIASVDAVFEAL 79 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHH-HHHHHHHHhcCC---ceEEeCCCCCHHHHHHHHHHH
Confidence 4577889888875 234443 456787 588888775443 333333333332 2356777654321 11111
Q ss_pred cCCCCCeeEEEEcCC
Q 022298 226 VGKDGPFDYMSVTPP 240 (299)
Q Consensus 226 ~~~~~~fDlI~iDPP 240 (299)
....++.|+++.+.-
T Consensus 80 ~~~~g~iD~lVnnAG 94 (271)
T PRK06505 80 EKKWGKLDFVVHAIG 94 (271)
T ss_pred HHHhCCCCEEEECCc
Confidence 112357899997764
No 448
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=45.29 E-value=52 Score=33.60 Aligned_cols=69 Identities=14% Similarity=0.240 Sum_probs=50.7
Q ss_pred EEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEE
Q 022298 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMS 236 (299)
Q Consensus 158 ~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~ 236 (299)
++|-++||-=-+..+.-.-|...++.+|.|+-++......|++.. ....+...|+.... -..+.||+|+
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~---~~~~~~~~d~~~l~-------fedESFdiVI 119 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER---PEMQMVEMDMDQLV-------FEDESFDIVI 119 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC---cceEEEEecchhcc-------CCCcceeEEE
Confidence 899999999988888778899899999999999854555565322 22566777765432 2357788776
No 449
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=44.99 E-value=1.2e+02 Score=27.24 Aligned_cols=81 Identities=11% Similarity=0.060 Sum_probs=46.1
Q ss_pred CCCCEEEEECCc-cchHHHHHH----HcCCCEEEEEeCCH--HHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH--H-h
Q 022298 154 LRPGRWLDLYSG-TGSVGIEAI----SRGCSEVHFVEMDP--WVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER--A-E 223 (299)
Q Consensus 154 ~~~~~VLDLfaG-SGalgIEAl----SrGa~~V~~VD~n~--~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~--~-~ 223 (299)
+.++++|=.|+| ++.+|.+.+ .+|+ +|+.++.+. +.+ +.+.+ .++ .+..++..|+.+...- . .
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~-~~~~~---~~~--~~~~~~~~Dv~~~~~i~~~~~ 77 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGFGRALRLT-ERIAK---RLP--EPAPVLELDVTNEEHLASLAD 77 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecCccchhHH-HHHHH---hcC--CCCcEEeCCCCCHHHHHHHHH
Confidence 457789999985 677777644 4687 588888764 333 32322 222 1345677776543211 1 1
Q ss_pred hhcCCCCCeeEEEEcCCC
Q 022298 224 QFVGKDGPFDYMSVTPPY 241 (299)
Q Consensus 224 ~~~~~~~~fDlI~iDPPY 241 (299)
......+++|+++.+.-+
T Consensus 78 ~~~~~~g~iD~li~nAG~ 95 (256)
T PRK07889 78 RVREHVDGLDGVVHSIGF 95 (256)
T ss_pred HHHHHcCCCcEEEEcccc
Confidence 111123679999987643
No 450
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=44.88 E-value=26 Score=28.99 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=19.0
Q ss_pred EEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCC
Q 022298 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT 242 (299)
Q Consensus 208 ~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~ 242 (299)
.++..+|+.+.+... ...||+||.|+ |.
T Consensus 33 L~L~~gDa~~~l~~l------~~~~Da~ylDg-Fs 60 (124)
T PF05430_consen 33 LTLWFGDAREMLPQL------DARFDAWYLDG-FS 60 (124)
T ss_dssp EEEEES-HHHHHHHB-------T-EEEEEE-S-S-
T ss_pred EEEEEcHHHHHHHhC------cccCCEEEecC-CC
Confidence 567889999988764 37899999997 44
No 451
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=44.87 E-value=1e+02 Score=27.07 Aligned_cols=83 Identities=12% Similarity=0.130 Sum_probs=49.0
Q ss_pred CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH---hhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA---EQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~---~~~~ 226 (299)
..+.++| +-.|+|.+|..+ ++.|+ +|+.++.++... +.+.+-++..+ .++.++.+|+.+..... ....
T Consensus 5 ~~~~~vl-ItGasg~iG~~la~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~ 79 (262)
T PRK13394 5 LNGKTAV-VTGAASGIGKEIALELARAGA-AVAIADLNQDGA-NAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVA 79 (262)
T ss_pred CCCCEEE-EECCCChHHHHHHHHHHHCCC-eEEEEeCChHHH-HHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHH
Confidence 3466777 556667777654 35687 599999999775 55555555443 34667888865432111 0001
Q ss_pred CCCCCeeEEEEcCCC
Q 022298 227 GKDGPFDYMSVTPPY 241 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY 241 (299)
...+..|+|+.+.-+
T Consensus 80 ~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 80 ERFGSVDILVSNAGI 94 (262)
T ss_pred HHcCCCCEEEECCcc
Confidence 112468988876643
No 452
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=44.81 E-value=23 Score=29.96 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=29.0
Q ss_pred HHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCCCC
Q 022298 173 AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (299)
Q Consensus 173 AlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY~~ 243 (299)
+++.|. +|..||.|+..- ..... ... . .....+..++... ....||+|++|=|-..
T Consensus 24 la~~g~-~vllvD~D~q~~-~~~~~----~~~-~---~~~~~l~~~~~~~-----~~~~yD~VIiD~pp~~ 79 (169)
T cd02037 24 LAKLGY-KVGLLDADIYGP-SIPKM----WRG-P---MKMGAIKQFLTDV-----DWGELDYLVIDMPPGT 79 (169)
T ss_pred HHHcCC-cEEEEeCCCCCC-CchHH----HhC-c---chHHHHHHHHHHh-----hcCCCCEEEEeCCCCC
Confidence 345675 699999998762 21111 110 0 0111223333221 1258999999988654
No 453
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=44.67 E-value=2.2e+02 Score=25.14 Aligned_cols=83 Identities=10% Similarity=0.002 Sum_probs=46.3
Q ss_pred CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~ 226 (299)
+.+.++|=.|++ |.+|... +..|+ +|+.++.+.. . +.+.+.+...+ .++.++.+|+.+...- .....
T Consensus 13 l~~k~vlItGas-~gIG~~ia~~l~~~G~-~v~~~~~~~~-~-~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~ 86 (258)
T PRK06935 13 LDGKVAIVTGGN-TGLGQGYAVALAKAGA-DIIITTHGTN-W-DETRRLIEKEG--RKVTFVQVDLTKPESAEKVVKEAL 86 (258)
T ss_pred CCCCEEEEeCCC-chHHHHHHHHHHHCCC-EEEEEeCCcH-H-HHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHH
Confidence 456778777664 4555443 45687 5888888743 2 33444444333 3467788887643211 11111
Q ss_pred CCCCCeeEEEEcCCCC
Q 022298 227 GKDGPFDYMSVTPPYT 242 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY~ 242 (299)
...+..|.++.+.-+.
T Consensus 87 ~~~g~id~li~~ag~~ 102 (258)
T PRK06935 87 EEFGKIDILVNNAGTI 102 (258)
T ss_pred HHcCCCCEEEECCCCC
Confidence 1124689999877543
No 454
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=44.37 E-value=1.4e+02 Score=28.27 Aligned_cols=88 Identities=16% Similarity=0.102 Sum_probs=59.8
Q ss_pred CCCCEEEEECCccc---hHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH---hhhcC
Q 022298 154 LRPGRWLDLYSGTG---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA---EQFVG 227 (299)
Q Consensus 154 ~~~~~VLDLfaGSG---algIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~---~~~~~ 227 (299)
..++.||==||-+| +++.|.+++|+. ++-+-...+.+ +.+.+-++..+-.+++.++++|+.+...-. .....
T Consensus 10 ~~~kvVvITGASsGIG~~lA~~la~~G~~-l~lvar~~rrl-~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~ 87 (282)
T KOG1205|consen 10 LAGKVVLITGASSGIGEALAYELAKRGAK-LVLVARRARRL-ERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIR 87 (282)
T ss_pred hCCCEEEEeCCCcHHHHHHHHHHHhCCCc-eEEeehhhhhH-HHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHH
Confidence 45788888888887 567777889985 66666777776 777666666554445888999976543211 01112
Q ss_pred CCCCeeEEEEcCCCCC
Q 022298 228 KDGPFDYMSVTPPYTA 243 (299)
Q Consensus 228 ~~~~fDlI~iDPPY~~ 243 (299)
.-+..|+.+.|-=+..
T Consensus 88 ~fg~vDvLVNNAG~~~ 103 (282)
T KOG1205|consen 88 HFGRVDVLVNNAGISL 103 (282)
T ss_pred hcCCCCEEEecCcccc
Confidence 3478999999887666
No 455
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=44.28 E-value=1.7e+02 Score=26.04 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=43.5
Q ss_pred CCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH---HHhhhcC
Q 022298 155 RPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFVG 227 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~---~~~~~~~ 227 (299)
.+.++|=.|+ +|.+|.+. +..|+ +|+.++.+.+.+ +.+.+. .+ +++..+.+|+.+... .......
T Consensus 4 ~~k~vlItGa-s~gIG~~ia~~l~~~G~-~V~~~~r~~~~~-~~l~~~---~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (262)
T TIGR03325 4 KGEVVLVTGG-ASGLGRAIVDRFVAEGA-RVAVLDKSAAGL-QELEAA---HG--DAVVGVEGDVRSLDDHKEAVARCVA 75 (262)
T ss_pred CCcEEEEECC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHhh---cC--CceEEEEeccCCHHHHHHHHHHHHH
Confidence 4566666655 55666654 35687 599999988765 444321 22 235667777654321 1111111
Q ss_pred CCCCeeEEEEcC
Q 022298 228 KDGPFDYMSVTP 239 (299)
Q Consensus 228 ~~~~fDlI~iDP 239 (299)
..+..|+++.+.
T Consensus 76 ~~g~id~li~~A 87 (262)
T TIGR03325 76 AFGKIDCLIPNA 87 (262)
T ss_pred HhCCCCEEEECC
Confidence 125689998876
No 456
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=43.98 E-value=2e+02 Score=25.61 Aligned_cols=81 Identities=11% Similarity=0.052 Sum_probs=44.0
Q ss_pred CCCCEEEEECCccchHHHH----HHHcCCCEEEEEe-CCHHHHHHHHHHHHHH-hCCCCcEEEEEcchhhHHHH---Hhh
Q 022298 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVE-MDPWVVSNVLIPNLEW-TGFLDVSSIHTVRVETFLER---AEQ 224 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD-~n~~Al~~~a~~N~~~-~g~~~~~~vi~~D~~~~l~~---~~~ 224 (299)
+.++++|=.|+ +|.+|.+ ++++|+. |+.+. .+.+.+ +.+.+.++. .+ .++.++..|+.+...- ...
T Consensus 6 l~~k~vlItGa-s~gIG~~ia~~l~~~G~~-v~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~ 80 (260)
T PRK08416 6 MKGKTLVISGG-TRGIGKAIVYEFAQSGVN-IAFTYNSNVEEA-NKIAEDLEQKYG--IKAKAYPLNILEPETYKELFKK 80 (260)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCCE-EEEEcCCCHHHH-HHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHH
Confidence 45777775554 4555554 4457874 77764 455554 444444432 22 2467788887653211 111
Q ss_pred hcCCCCCeeEEEEcC
Q 022298 225 FVGKDGPFDYMSVTP 239 (299)
Q Consensus 225 ~~~~~~~fDlI~iDP 239 (299)
+....+++|+++.+.
T Consensus 81 ~~~~~g~id~lv~nA 95 (260)
T PRK08416 81 IDEDFDRVDFFISNA 95 (260)
T ss_pred HHHhcCCccEEEECc
Confidence 111225789999775
No 457
>PRK08264 short chain dehydrogenase; Validated
Probab=43.19 E-value=1.5e+02 Score=25.70 Aligned_cols=75 Identities=13% Similarity=-0.003 Sum_probs=45.1
Q ss_pred CCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298 155 RPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~ 230 (299)
.+.++|=.| |+|.+|.++ +++|+.+|+.++.+.... +. . .+.+.++.+|+.+..... .+....+
T Consensus 5 ~~~~vlItG-gsg~iG~~la~~l~~~G~~~V~~~~r~~~~~-~~-------~--~~~~~~~~~D~~~~~~~~-~~~~~~~ 72 (238)
T PRK08264 5 KGKVVLVTG-ANRGIGRAFVEQLLARGAAKVYAAARDPESV-TD-------L--GPRVVPLQLDVTDPASVA-AAAEAAS 72 (238)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCcccEEEEecChhhh-hh-------c--CCceEEEEecCCCHHHHH-HHHHhcC
Confidence 456666555 577777663 457875799999987654 22 2 234677888876543211 1111124
Q ss_pred CeeEEEEcCCC
Q 022298 231 PFDYMSVTPPY 241 (299)
Q Consensus 231 ~fDlI~iDPPY 241 (299)
..|+|+...-.
T Consensus 73 ~id~vi~~ag~ 83 (238)
T PRK08264 73 DVTILVNNAGI 83 (238)
T ss_pred CCCEEEECCCc
Confidence 68999877644
No 458
>PRK07825 short chain dehydrogenase; Provisional
Probab=43.10 E-value=2.1e+02 Score=25.61 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=44.4
Q ss_pred CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~ 226 (299)
+.+.++|=.| |||.+|.+. +++|+ +|+.++.+++.+ +.+.+.+ + ++.++.+|+.+.... .....
T Consensus 3 ~~~~~ilVtG-asggiG~~la~~l~~~G~-~v~~~~r~~~~~-~~~~~~~---~---~~~~~~~D~~~~~~~~~~~~~~~ 73 (273)
T PRK07825 3 LRGKVVAITG-GARGIGLATARALAALGA-RVAIGDLDEALA-KETAAEL---G---LVVGGPLDVTDPASFAAFLDAVE 73 (273)
T ss_pred CCCCEEEEeC-CCchHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHh---c---cceEEEccCCCHHHHHHHHHHHH
Confidence 3456777554 456677654 45687 489999988765 4443332 2 245667776543211 11111
Q ss_pred CCCCCeeEEEEcCCC
Q 022298 227 GKDGPFDYMSVTPPY 241 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY 241 (299)
...+..|+++.+.-.
T Consensus 74 ~~~~~id~li~~ag~ 88 (273)
T PRK07825 74 ADLGPIDVLVNNAGV 88 (273)
T ss_pred HHcCCCCEEEECCCc
Confidence 112568999987643
No 459
>PRK10037 cell division protein; Provisional
Probab=42.88 E-value=1.2e+02 Score=27.25 Aligned_cols=14 Identities=21% Similarity=0.543 Sum_probs=11.7
Q ss_pred CCeeEEEEcCCCCC
Q 022298 230 GPFDYMSVTPPYTA 243 (299)
Q Consensus 230 ~~fDlI~iDPPY~~ 243 (299)
..||+|++|-|=..
T Consensus 116 ~~yD~iiIDtpp~~ 129 (250)
T PRK10037 116 GRYQWILLDLPRGA 129 (250)
T ss_pred CCCCEEEEECCCCc
Confidence 57999999988664
No 460
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.33 E-value=93 Score=30.97 Aligned_cols=73 Identities=14% Similarity=0.091 Sum_probs=41.7
Q ss_pred CCCCEEEEECCccchHHH--HHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcch-hhHHHHHhhhcCCCC
Q 022298 154 LRPGRWLDLYSGTGSVGI--EAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV-ETFLERAEQFVGKDG 230 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgI--EAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~-~~~l~~~~~~~~~~~ 230 (299)
+.+.+|+=+|.|-..+++ .+..+|+ .|++.|.++........+.++..|+ .+..++- .+.+ .
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~~~~~~~~~l~~~gi----~~~~~~~~~~~~----------~ 76 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKSEEELGEVSNELKELGV----KLVLGENYLDKL----------D 76 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCCCccchHHHHHHHhCCC----EEEeCCCChHHh----------c
Confidence 346788877777766665 3446787 6999998764220111223555553 3443332 1211 4
Q ss_pred CeeEEEEcCCC
Q 022298 231 PFDYMSVTPPY 241 (299)
Q Consensus 231 ~fDlI~iDPPY 241 (299)
.+|+|+.-|-.
T Consensus 77 ~~dlVV~Spgi 87 (458)
T PRK01710 77 GFDVIFKTPSM 87 (458)
T ss_pred cCCEEEECCCC
Confidence 68999988733
No 461
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=42.11 E-value=1.3e+02 Score=28.51 Aligned_cols=32 Identities=25% Similarity=0.445 Sum_probs=23.3
Q ss_pred CCCEEEEECCccchHHHHHHH----cCCCEEEEEeCCH
Q 022298 155 RPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDP 188 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlS----rGa~~V~~VD~n~ 188 (299)
...+||=+ |.|.+|.|++. .|..+++.+|-+.
T Consensus 18 ~~s~VLIv--G~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 18 QKSNVLIS--GLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred hcCcEEEE--cCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 35677766 55678888653 5888999999764
No 462
>PRK07074 short chain dehydrogenase; Provisional
Probab=41.97 E-value=2.2e+02 Score=24.99 Aligned_cols=77 Identities=13% Similarity=0.105 Sum_probs=43.2
Q ss_pred EEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---HhhhcCCCC
Q 022298 158 RWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFVGKDG 230 (299)
Q Consensus 158 ~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~~~~~ 230 (299)
++|=.| |+|.+|.+. +++|+ +|+.++.++... +.+.+.+. ..++.++.+|+.+.... ........+
T Consensus 4 ~ilItG-at~~iG~~la~~L~~~g~-~v~~~~r~~~~~-~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 76 (257)
T PRK07074 4 TALVTG-AAGGIGQALARRFLAAGD-RVLALDIDAAAL-AAFADALG----DARFVPVACDLTDAASLAAALANAAAERG 76 (257)
T ss_pred EEEEEC-CcchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 455444 455567653 35676 699999988765 44444331 12466778887544321 111111124
Q ss_pred CeeEEEEcCCC
Q 022298 231 PFDYMSVTPPY 241 (299)
Q Consensus 231 ~fDlI~iDPPY 241 (299)
.+|.|+...-.
T Consensus 77 ~~d~vi~~ag~ 87 (257)
T PRK07074 77 PVDVLVANAGA 87 (257)
T ss_pred CCCEEEECCCC
Confidence 68999987743
No 463
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.89 E-value=36 Score=30.99 Aligned_cols=70 Identities=19% Similarity=0.210 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCc-cchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHH
Q 022298 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSG-TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEW 201 (299)
Q Consensus 130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaG-SGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~ 201 (299)
++--|.|+|......+...++....+.+++|=+|+. +|++--++||. +.+|+.+|++|..- .++..|++-
T Consensus 19 ~~v~Dvv~eI~~~K~~ai~~~~~~~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r-~~lp~~v~F 89 (254)
T COG4017 19 TRVVDVVNEIAKKKYQAIRDFLEGEEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMR-GFLPNNVKF 89 (254)
T ss_pred CcHHHHHHHHHHHHHHHhhhhhcccCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHH-hcCCCCccH
Confidence 566676766554443332222122467888888876 78888888988 66899999999874 777767653
No 464
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=41.71 E-value=2.7e+02 Score=25.75 Aligned_cols=81 Identities=16% Similarity=0.164 Sum_probs=46.4
Q ss_pred CCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---HhhhcC
Q 022298 155 RPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFVG 227 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~~ 227 (299)
.+.++|=.| |+|.+|.+.+ .+|+ +|+.++.+.... +.+.+.+... ..++.++..|+.+...- ...+..
T Consensus 5 ~~k~vlVTG-as~gIG~~~a~~L~~~G~-~V~~~~r~~~~~-~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (322)
T PRK07453 5 AKGTVIITG-ASSGVGLYAAKALAKRGW-HVIMACRNLKKA-EAAAQELGIP--PDSYTIIHIDLGDLDSVRRFVDDFRA 79 (322)
T ss_pred CCCEEEEEc-CCChHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHhhcc--CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 456666555 5677777644 4686 699999988765 4444444321 23467778886543211 111111
Q ss_pred CCCCeeEEEEcCC
Q 022298 228 KDGPFDYMSVTPP 240 (299)
Q Consensus 228 ~~~~fDlI~iDPP 240 (299)
...+.|+++.+.-
T Consensus 80 ~~~~iD~li~nAg 92 (322)
T PRK07453 80 LGKPLDALVCNAA 92 (322)
T ss_pred hCCCccEEEECCc
Confidence 2346899997754
No 465
>PRK05855 short chain dehydrogenase; Validated
Probab=41.33 E-value=2.1e+02 Score=28.45 Aligned_cols=83 Identities=16% Similarity=0.075 Sum_probs=50.4
Q ss_pred CCCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH---hhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA---EQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~---~~~~ 226 (299)
..+.++|= -.|||.+|.+. +.+|+ +|+.++.+.... +.+.+.++..+. ++.++.+|+.+...-. ....
T Consensus 313 ~~~~~~lv-~G~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~ 387 (582)
T PRK05855 313 FSGKLVVV-TGAGSGIGRETALAFAREGA-EVVASDIDEAAA-ERTAELIRAAGA--VAHAYRVDVSDADAMEAFAEWVR 387 (582)
T ss_pred CCCCEEEE-ECCcCHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHH
Confidence 34566664 45577777664 35687 499999998876 555555555443 4677888876543211 1111
Q ss_pred CCCCCeeEEEEcCCC
Q 022298 227 GKDGPFDYMSVTPPY 241 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY 241 (299)
...+..|+++.+.=.
T Consensus 388 ~~~g~id~lv~~Ag~ 402 (582)
T PRK05855 388 AEHGVPDIVVNNAGI 402 (582)
T ss_pred HhcCCCcEEEECCcc
Confidence 123568999987643
No 466
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=41.15 E-value=2.2e+02 Score=24.84 Aligned_cols=73 Identities=11% Similarity=0.048 Sum_probs=43.0
Q ss_pred CCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---HhhhcCCCCCeeEE
Q 022298 163 YSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFVGKDGPFDYM 235 (299)
Q Consensus 163 faGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~~~~~~fDlI 235 (299)
..|+|.+|.+.+ .+|+ +|++++.++... +.+..-++..+ .++.++.+|+.+...- ...+.......|.|
T Consensus 7 tGa~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v 82 (255)
T TIGR01963 7 TGAASGIGLAIALALAAAGA-NVVVNDLGEAGA-EAAAKVATDAG--GSVIYLVADVTKEDEIADMIAAAAAEFGGLDIL 82 (255)
T ss_pred cCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 346788887654 4687 699999988765 55555444333 3467788887643210 00011112457988
Q ss_pred EEcC
Q 022298 236 SVTP 239 (299)
Q Consensus 236 ~iDP 239 (299)
|.+.
T Consensus 83 i~~a 86 (255)
T TIGR01963 83 VNNA 86 (255)
T ss_pred EECC
Confidence 8765
No 467
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=41.08 E-value=1.7e+02 Score=27.85 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=28.2
Q ss_pred CCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHH
Q 022298 155 RPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLI 196 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~ 196 (299)
.+.+||=.+ .|.+|+.++ .+|+.+|+++|.+++.. +.++
T Consensus 186 ~g~~VlV~G--~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~-~~~~ 228 (368)
T cd08300 186 PGSTVAVFG--LGAVGLAVIQGAKAAGASRIIGIDINPDKF-ELAK 228 (368)
T ss_pred CCCEEEEEC--CCHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHH
Confidence 467777774 478887754 36887799999998876 5553
No 468
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.03 E-value=1.2e+02 Score=26.37 Aligned_cols=83 Identities=16% Similarity=0.153 Sum_probs=49.1
Q ss_pred CCCEEEEECCccchHHHHHH----HcCCCEEEEE-eCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298 155 RPGRWLDLYSGTGSVGIEAI----SRGCSEVHFV-EMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAl----SrGa~~V~~V-D~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~ 226 (299)
.+.++|=.| |+|.+|.+.+ ++|+ +|+.+ +.++... +.+...+...+ .++.++.+|+.+.... .....
T Consensus 4 ~~~~ilI~G-asg~iG~~la~~l~~~g~-~v~~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 78 (247)
T PRK05565 4 MGKVAIVTG-ASGGIGRAIAELLAKEGA-KVVIAYDINEEAA-QELLEEIKEEG--GDAIAVKADVSSEEDVENLVEQIV 78 (247)
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCC-EEEEEcCCCHHHH-HHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHH
Confidence 455565554 5788887643 4677 47777 8888775 55555555432 3467788887543211 10011
Q ss_pred CCCCCeeEEEEcCCCC
Q 022298 227 GKDGPFDYMSVTPPYT 242 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY~ 242 (299)
...+.+|+||..+-+.
T Consensus 79 ~~~~~id~vi~~ag~~ 94 (247)
T PRK05565 79 EKFGKIDILVNNAGIS 94 (247)
T ss_pred HHhCCCCEEEECCCcC
Confidence 1123689999888654
No 469
>PRK07774 short chain dehydrogenase; Provisional
Probab=41.02 E-value=2.4e+02 Score=24.52 Aligned_cols=83 Identities=14% Similarity=0.141 Sum_probs=48.1
Q ss_pred CCCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~ 226 (299)
+++.++|=. .|+|.+|...+ ++|+ +|+.++.++... +.+...++..+ .....+..|+.+...- .....
T Consensus 4 ~~~k~vlIt-Gasg~iG~~la~~l~~~g~-~vi~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~ 78 (250)
T PRK07774 4 FDDKVAIVT-GAAGGIGQAYAEALAREGA-SVVVADINAEGA-ERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATV 78 (250)
T ss_pred cCCCEEEEE-CCCchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHH
Confidence 356677644 46777776644 5676 699999988765 55555444322 2355677776543211 00011
Q ss_pred CCCCCeeEEEEcCCC
Q 022298 227 GKDGPFDYMSVTPPY 241 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY 241 (299)
...+..|+||.+--+
T Consensus 79 ~~~~~id~vi~~ag~ 93 (250)
T PRK07774 79 SAFGGIDYLVNNAAI 93 (250)
T ss_pred HHhCCCCEEEECCCC
Confidence 112468999987654
No 470
>PRK07201 short chain dehydrogenase; Provisional
Probab=40.93 E-value=2e+02 Score=29.50 Aligned_cols=83 Identities=14% Similarity=0.220 Sum_probs=49.9
Q ss_pred CCCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH---hhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA---EQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~---~~~~ 226 (299)
+.+.++| +..|+|.+|.+.+ .+|+ +|+.++.++..+ +.+.+.+...+ .++.++.+|+.+..... ....
T Consensus 369 ~~~k~vl-ItGas~giG~~la~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~ 443 (657)
T PRK07201 369 LVGKVVL-ITGASSGIGRATAIKVAEAGA-TVFLVARNGEAL-DELVAEIRAKG--GTAHAYTCDLTDSAAVDHTVKDIL 443 (657)
T ss_pred CCCCEEE-EeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHH
Confidence 3455666 4555677777654 5687 699999998876 55555554433 34677888876432111 1111
Q ss_pred CCCCCeeEEEEcCCC
Q 022298 227 GKDGPFDYMSVTPPY 241 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY 241 (299)
...+..|+++.+.-+
T Consensus 444 ~~~g~id~li~~Ag~ 458 (657)
T PRK07201 444 AEHGHVDYLVNNAGR 458 (657)
T ss_pred HhcCCCCEEEECCCC
Confidence 122468999987754
No 471
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=40.83 E-value=26 Score=34.69 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=30.4
Q ss_pred CCCCCEEEEECCccchHHHHHHHc---CCCEEEEEeCCHHHHHHHHHHHHHHh
Q 022298 153 SLRPGRWLDLYSGTGSVGIEAISR---GCSEVHFVEMDPWVVSNVLIPNLEWT 202 (299)
Q Consensus 153 ~~~~~~VLDLfaGSGalgIEAlSr---Ga~~V~~VD~n~~Al~~~a~~N~~~~ 202 (299)
++...++||+|+|.|+-.. |+.- --..++.+|.|+. + +-+-..+..+
T Consensus 111 dfapqsiLDvG~GPgtgl~-A~n~i~Pdl~sa~ile~sp~-l-rkV~~tl~~n 160 (484)
T COG5459 111 DFAPQSILDVGAGPGTGLW-ALNDIWPDLKSAVILEASPA-L-RKVGDTLAEN 160 (484)
T ss_pred CcCcchhhccCCCCchhhh-hhcccCCCchhhhhhccCHH-H-HHHHHHHHhh
Confidence 4667889999999998544 4321 2346889999885 3 3343444443
No 472
>PRK06101 short chain dehydrogenase; Provisional
Probab=40.77 E-value=1.6e+02 Score=25.94 Aligned_cols=71 Identities=10% Similarity=0.002 Sum_probs=39.5
Q ss_pred ECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEE
Q 022298 162 LYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV 237 (299)
Q Consensus 162 LfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~i 237 (299)
+-.|+|.+|.+.+ .+|+ +|+.++.+++.. +.+... + .++.++.+|+.+...-...+.......|.++.
T Consensus 6 ItGas~giG~~la~~L~~~G~-~V~~~~r~~~~~-~~~~~~----~--~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~ 77 (240)
T PRK06101 6 ITGATSGIGKQLALDYAKQGW-QVIACGRNQSVL-DELHTQ----S--ANIFTLAFDVTDHPGTKAALSQLPFIPELWIF 77 (240)
T ss_pred EEcCCcHHHHHHHHHHHhCCC-EEEEEECCHHHH-HHHHHh----c--CCCeEEEeeCCCHHHHHHHHHhcccCCCEEEE
Confidence 4456788887643 5787 599999998765 433221 1 23567778876543211111111123577777
Q ss_pred cCC
Q 022298 238 TPP 240 (299)
Q Consensus 238 DPP 240 (299)
+..
T Consensus 78 ~ag 80 (240)
T PRK06101 78 NAG 80 (240)
T ss_pred cCc
Confidence 764
No 473
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=40.48 E-value=19 Score=35.66 Aligned_cols=20 Identities=35% Similarity=0.346 Sum_probs=16.7
Q ss_pred CCEEEEECCccchHHHHHHH
Q 022298 156 PGRWLDLYSGTGSVGIEAIS 175 (299)
Q Consensus 156 ~~~VLDLfaGSGalgIEAlS 175 (299)
..+++|+|||+|..++.+++
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs 83 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIID 83 (386)
T ss_pred ceeEEEecCCCCccHHHHHH
Confidence 45899999999988877654
No 474
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=40.00 E-value=2.6e+02 Score=29.59 Aligned_cols=84 Identities=13% Similarity=0.116 Sum_probs=48.5
Q ss_pred CCCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHH-hCCCCcEEEEEcchhhHHHH---Hhhh
Q 022298 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEW-TGFLDVSSIHTVRVETFLER---AEQF 225 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~-~g~~~~~~vi~~D~~~~l~~---~~~~ 225 (299)
+.++++|=. .|+|.+|.+.+ ++|+ +|++++.+...+ +.+.+.+.. .+ .+.+..+++|+.+...- ....
T Consensus 412 l~gkvvLVT-GasggIG~aiA~~La~~Ga-~Vvi~~r~~~~~-~~~~~~l~~~~~-~~~~~~v~~Dvtd~~~v~~a~~~i 487 (676)
T TIGR02632 412 LARRVAFVT-GGAGGIGRETARRLAAEGA-HVVLADLNLEAA-EAVAAEINGQFG-AGRAVALKMDVTDEQAVKAAFADV 487 (676)
T ss_pred CCCCEEEEe-CCCcHHHHHHHHHHHhCCC-EEEEEeCCHHHH-HHHHHHHHhhcC-CCcEEEEECCCCCHHHHHHHHHHH
Confidence 346667744 45677776643 5687 699999998876 555444432 22 22356677887543211 1111
Q ss_pred cCCCCCeeEEEEcCCC
Q 022298 226 VGKDGPFDYMSVTPPY 241 (299)
Q Consensus 226 ~~~~~~fDlI~iDPPY 241 (299)
....+.+|+|+.+.-+
T Consensus 488 ~~~~g~iDilV~nAG~ 503 (676)
T TIGR02632 488 ALAYGGVDIVVNNAGI 503 (676)
T ss_pred HHhcCCCcEEEECCCC
Confidence 1122478999877754
No 475
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=39.96 E-value=2e+02 Score=25.46 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=22.1
Q ss_pred CCCCEEEEECCccchHHHHH---H-HcCCCEEEEEeCC
Q 022298 154 LRPGRWLDLYSGTGSVGIEA---I-SRGCSEVHFVEMD 187 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEA---l-SrGa~~V~~VD~n 187 (299)
+...+|+=+||| .+|.+. + ..|..+++.+|.|
T Consensus 19 L~~~~V~IvG~G--glGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGLG--GLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HhCCcEEEECcC--HHHHHHHHHHHHcCCCEEEEECCC
Confidence 346788888775 444442 3 4588889999998
No 476
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=39.95 E-value=2.6e+02 Score=25.96 Aligned_cols=82 Identities=15% Similarity=0.101 Sum_probs=45.2
Q ss_pred CCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH---HHhhhcCC
Q 022298 156 PGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFVGK 228 (299)
Q Consensus 156 ~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~---~~~~~~~~ 228 (299)
+.++|=.| |++.+|.+. +++|+.+|+.+..+.+.. +-+.+.+... ..++.++..|+.+... ....+...
T Consensus 3 ~k~vlITG-as~GIG~aia~~L~~~G~~~V~l~~r~~~~~-~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 78 (314)
T TIGR01289 3 KPTVIITG-ASSGLGLYAAKALAATGEWHVIMACRDFLKA-EQAAKSLGMP--KDSYTIMHLDLGSLDSVRQFVQQFRES 78 (314)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHcCCCEEEEEeCCHHHH-HHHHHHhcCC--CCeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 34566555 455566653 356844799999888765 4444443321 1346677777654321 11111112
Q ss_pred CCCeeEEEEcCCC
Q 022298 229 DGPFDYMSVTPPY 241 (299)
Q Consensus 229 ~~~fDlI~iDPPY 241 (299)
.+..|+++.+.-+
T Consensus 79 ~~~iD~lI~nAG~ 91 (314)
T TIGR01289 79 GRPLDALVCNAAV 91 (314)
T ss_pred CCCCCEEEECCCc
Confidence 3578999988653
No 477
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=39.88 E-value=58 Score=25.30 Aligned_cols=66 Identities=18% Similarity=0.139 Sum_probs=40.8
Q ss_pred CCccchHHHHHH---HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcC
Q 022298 163 YSGTGSVGIEAI---SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP 239 (299)
Q Consensus 163 faGSGalgIEAl---SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDP 239 (299)
-||.|.+|.+.+ +.+...|+.+|.|++.+ +.+++. + +.++.+|..+...... ..-.+.|.|++.-
T Consensus 3 I~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~-~~~~~~----~----~~~i~gd~~~~~~l~~---a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 3 IIGYGRIGREIAEQLKEGGIDVVVIDRDPERV-EELREE----G----VEVIYGDATDPEVLER---AGIEKADAVVILT 70 (116)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSHHHH-HHHHHT----T----SEEEES-TTSHHHHHH---TTGGCESEEEEES
T ss_pred EEcCCHHHHHHHHHHHhCCCEEEEEECCcHHH-HHHHhc----c----cccccccchhhhHHhh---cCccccCEEEEcc
Confidence 478888887755 34545799999999986 555432 2 4578899875532211 0124688887765
Q ss_pred C
Q 022298 240 P 240 (299)
Q Consensus 240 P 240 (299)
+
T Consensus 71 ~ 71 (116)
T PF02254_consen 71 D 71 (116)
T ss_dssp S
T ss_pred C
Confidence 4
No 478
>PRK06196 oxidoreductase; Provisional
Probab=39.54 E-value=2.9e+02 Score=25.49 Aligned_cols=79 Identities=15% Similarity=0.182 Sum_probs=46.2
Q ss_pred CCCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~ 226 (299)
..+.++|=.| |+|.+|.+++ .+|+ +|++++.+++.. +.+...+. .+.++.+|+.+...- .....
T Consensus 24 l~~k~vlITG-asggIG~~~a~~L~~~G~-~Vv~~~R~~~~~-~~~~~~l~------~v~~~~~Dl~d~~~v~~~~~~~~ 94 (315)
T PRK06196 24 LSGKTAIVTG-GYSGLGLETTRALAQAGA-HVIVPARRPDVA-REALAGID------GVEVVMLDLADLESVRAFAERFL 94 (315)
T ss_pred CCCCEEEEeC-CCchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHhh------hCeEEEccCCCHHHHHHHHHHHH
Confidence 3566777665 5566776644 4677 599999988765 44433332 145677776543211 11111
Q ss_pred CCCCCeeEEEEcCCC
Q 022298 227 GKDGPFDYMSVTPPY 241 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY 241 (299)
...++.|+++.+..+
T Consensus 95 ~~~~~iD~li~nAg~ 109 (315)
T PRK06196 95 DSGRRIDILINNAGV 109 (315)
T ss_pred hcCCCCCEEEECCCC
Confidence 123578999987654
No 479
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=39.31 E-value=1.6e+02 Score=27.15 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=25.2
Q ss_pred CCCEEEEECCccchHHHHH---HH-cCCCEEEEEeCCHHHHHHHHHH
Q 022298 155 RPGRWLDLYSGTGSVGIEA---IS-RGCSEVHFVEMDPWVVSNVLIP 197 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEA---lS-rGa~~V~~VD~n~~Al~~~a~~ 197 (299)
.+.+||-.++ |++|..+ ++ +|+..+++++.+.... +.+++
T Consensus 167 ~~~~VlI~g~--g~vg~~~iqlak~~g~~~v~~~~~~~~~~-~~~~~ 210 (347)
T cd05278 167 PGSTVAVIGA--GPVGLCAVAGARLLGAARIIAVDSNPERL-DLAKE 210 (347)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEEeCCHHHH-HHHHH
Confidence 4678888654 5555433 33 5765788888887665 55543
No 480
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=39.26 E-value=1.9e+02 Score=24.95 Aligned_cols=35 Identities=31% Similarity=0.271 Sum_probs=22.6
Q ss_pred CCEEEEECCccc-------hHHHHHHHcCCCEEEEEeCCHHHH
Q 022298 156 PGRWLDLYSGTG-------SVGIEAISRGCSEVHFVEMDPWVV 191 (299)
Q Consensus 156 ~~~VLDLfaGSG-------algIEAlSrGa~~V~~VD~n~~Al 191 (299)
.-++||+-.|+| -+..|+++++. +|...+-....+
T Consensus 5 ~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~-rvLvL~PTRvva 46 (148)
T PF07652_consen 5 ELTVLDLHPGAGKTRRVLPEIVREAIKRRL-RVLVLAPTRVVA 46 (148)
T ss_dssp EEEEEE--TTSSTTTTHHHHHHHHHHHTT---EEEEESSHHHH
T ss_pred ceeEEecCCCCCCcccccHHHHHHHHHccC-eEEEecccHHHH
Confidence 358999999999 34457788876 477777766554
No 481
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=38.83 E-value=2.8e+02 Score=24.50 Aligned_cols=83 Identities=17% Similarity=0.091 Sum_probs=50.9
Q ss_pred CCCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhhc
Q 022298 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~ 226 (299)
+.+.++|=.| |+|.+|...+ ++|+ +|+.++.+.... +.+.+.++..+ .++.++.+|+.+...- .....
T Consensus 10 ~~~k~ilItG-a~g~IG~~la~~l~~~G~-~V~~~~r~~~~~-~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~ 84 (259)
T PRK08213 10 LSGKTALVTG-GSRGLGLQIAEALGEAGA-RVVLSARKAEEL-EEAAAHLEALG--IDALWIAADVADEADIERLAEETL 84 (259)
T ss_pred cCCCEEEEEC-CCchHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHH
Confidence 4567777666 5777776643 5687 699999998776 66666555443 2466788887643211 01011
Q ss_pred CCCCCeeEEEEcCCC
Q 022298 227 GKDGPFDYMSVTPPY 241 (299)
Q Consensus 227 ~~~~~fDlI~iDPPY 241 (299)
...+..|.|+.....
T Consensus 85 ~~~~~id~vi~~ag~ 99 (259)
T PRK08213 85 ERFGHVDILVNNAGA 99 (259)
T ss_pred HHhCCCCEEEECCCC
Confidence 112468999987654
No 482
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=38.77 E-value=2.1e+02 Score=23.19 Aligned_cols=73 Identities=18% Similarity=0.155 Sum_probs=40.9
Q ss_pred CCCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCC
Q 022298 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~ 229 (299)
..+.+++-+|+ |.+|...+ ..|...|+.+|.+++.. +.+.+...... ......|..+. -
T Consensus 17 ~~~~~i~iiG~--G~~g~~~a~~l~~~g~~~v~v~~r~~~~~-~~~~~~~~~~~----~~~~~~~~~~~----------~ 79 (155)
T cd01065 17 LKGKKVLILGA--GGAARAVAYALAELGAAKIVIVNRTLEKA-KALAERFGELG----IAIAYLDLEEL----------L 79 (155)
T ss_pred CCCCEEEEECC--cHHHHHHHHHHHHCCCCEEEEEcCCHHHH-HHHHHHHhhcc----cceeecchhhc----------c
Confidence 45678887766 55665433 34556799999998765 44444332111 11111232221 1
Q ss_pred CCeeEEEEcCCCCC
Q 022298 230 GPFDYMSVTPPYTA 243 (299)
Q Consensus 230 ~~fDlI~iDPPY~~ 243 (299)
+..|+|++.=|...
T Consensus 80 ~~~Dvvi~~~~~~~ 93 (155)
T cd01065 80 AEADLIINTTPVGM 93 (155)
T ss_pred ccCCEEEeCcCCCC
Confidence 56899987766554
No 483
>PRK06701 short chain dehydrogenase; Provisional
Probab=38.45 E-value=2.6e+02 Score=25.68 Aligned_cols=83 Identities=17% Similarity=0.109 Sum_probs=44.8
Q ss_pred CCCCEEEEECCccchHHHH----HHHcCCCEEEEEeCCHH-HHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhh
Q 022298 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPW-VVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQF 225 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIE----AlSrGa~~V~~VD~n~~-Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~ 225 (299)
+.+.++|=.|+ +|.+|.+ ++++|+ +|+.++.+.. .. +.+...++..+ .++.++.+|+.+.... ....
T Consensus 44 ~~~k~iLItGa-sggIG~~la~~l~~~G~-~V~l~~r~~~~~~-~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i 118 (290)
T PRK06701 44 LKGKVALITGG-DSGIGRAVAVLFAKEGA-DIAIVYLDEHEDA-NETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEET 118 (290)
T ss_pred CCCCEEEEeCC-CcHHHHHHHHHHHHCCC-EEEEEeCCcchHH-HHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHH
Confidence 45678887776 4455554 345787 5888887643 22 33333333333 2466778886543211 1111
Q ss_pred cCCCCCeeEEEEcCCC
Q 022298 226 VGKDGPFDYMSVTPPY 241 (299)
Q Consensus 226 ~~~~~~fDlI~iDPPY 241 (299)
......+|+|+.+.-+
T Consensus 119 ~~~~~~iD~lI~~Ag~ 134 (290)
T PRK06701 119 VRELGRLDILVNNAAF 134 (290)
T ss_pred HHHcCCCCEEEECCcc
Confidence 1112468999977644
No 484
>COG4889 Predicted helicase [General function prediction only]
Probab=38.37 E-value=50 Score=36.61 Aligned_cols=46 Identities=26% Similarity=0.318 Sum_probs=30.5
Q ss_pred CCCEEEEECCccchHHHHHHH---------cC-CCEEEEEeCCHHHHHHHHHHHHHH
Q 022298 155 RPGRWLDLYSGTGSVGIEAIS---------RG-CSEVHFVEMDPWVVSNVLIPNLEW 201 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAlS---------rG-a~~V~~VD~n~~Al~~~a~~N~~~ 201 (299)
++.+|||.|+|||+|-...|+ |. .....+.|+--.+. -++.-|++.
T Consensus 845 ~~vhilDpFtGTGtFi~RlL~alIs~edl~rKf~~eLhA~eIvLLsY-YIAaiNIe~ 900 (1518)
T COG4889 845 QSVHILDPFTGTGTFIVRLLSALISDEDLKRKFQKELHAFEIVLLSY-YIAAINIEQ 900 (1518)
T ss_pred CCeeeecCCCCccHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHH-HHHHhhHHH
Confidence 578999999999999876665 21 22355555555554 456666654
No 485
>PLN02827 Alcohol dehydrogenase-like
Probab=38.33 E-value=1.5e+02 Score=28.48 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=27.6
Q ss_pred CCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHH
Q 022298 155 RPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVL 195 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a 195 (299)
.+.+||=.+ .|.+|+.++ .+|+..|+++|.+++.. +.+
T Consensus 193 ~g~~VlV~G--~G~vG~~~iqlak~~G~~~vi~~~~~~~~~-~~a 234 (378)
T PLN02827 193 KGSSVVIFG--LGTVGLSVAQGAKLRGASQIIGVDINPEKA-EKA 234 (378)
T ss_pred CCCEEEEEC--CCHHHHHHHHHHHHcCCCeEEEECCCHHHH-HHH
Confidence 477888774 577887654 36887799999888765 555
No 486
>PRK06114 short chain dehydrogenase; Provisional
Probab=38.32 E-value=2.8e+02 Score=24.46 Aligned_cols=83 Identities=10% Similarity=0.035 Sum_probs=46.8
Q ss_pred CCCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHH-HHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhh
Q 022298 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPW-VVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQF 225 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~-Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~ 225 (299)
+.++++|=.| |+|.+|.+.+ ..|+ +|+.++.+.. .+ +.+.+.++..+ .++.++..|+.+...- ....
T Consensus 6 ~~~k~~lVtG-~s~gIG~~ia~~l~~~G~-~v~~~~r~~~~~~-~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~ 80 (254)
T PRK06114 6 LDGQVAFVTG-AGSGIGQRIAIGLAQAGA-DVALFDLRTDDGL-AETAEHIEAAG--RRAIQIAADVTSKADLRAAVART 80 (254)
T ss_pred CCCCEEEEEC-CCchHHHHHHHHHHHCCC-EEEEEeCCcchHH-HHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHH
Confidence 4567777555 5666776644 4687 6888888643 33 44445554443 2456677776543211 1111
Q ss_pred cCCCCCeeEEEEcCCC
Q 022298 226 VGKDGPFDYMSVTPPY 241 (299)
Q Consensus 226 ~~~~~~fDlI~iDPPY 241 (299)
....++.|+++.+.-+
T Consensus 81 ~~~~g~id~li~~ag~ 96 (254)
T PRK06114 81 EAELGALTLAVNAAGI 96 (254)
T ss_pred HHHcCCCCEEEECCCC
Confidence 1112568999987754
No 487
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=37.82 E-value=2e+02 Score=28.87 Aligned_cols=80 Identities=16% Similarity=0.079 Sum_probs=46.6
Q ss_pred CCCCEEEEECCccchHHHHHHH----cCCCEEEEEeCCHH-------------------HHHHHHHHHHHHhCCCCcEEE
Q 022298 154 LRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPW-------------------VVSNVLIPNLEWTGFLDVSSI 210 (299)
Q Consensus 154 ~~~~~VLDLfaGSGalgIEAlS----rGa~~V~~VD~n~~-------------------Al~~~a~~N~~~~g~~~~~~v 210 (299)
++..+||=+|| |++|.|.+. .|..+++.+|-+.- -+ +.+.+++..++-.-.+++
T Consensus 18 L~~s~VlliG~--gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA-~~~~~~L~eLNp~V~i~~ 94 (425)
T cd01493 18 LESAHVCLLNA--TATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRA-EATCELLQELNPDVNGSA 94 (425)
T ss_pred HhhCeEEEEcC--cHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHH-HHHHHHHHHHCCCCEEEE
Confidence 45678888854 569999764 48888999986531 22 355666766654323455
Q ss_pred EEcchhhHHHHHhhhcCCCCCeeEEEEcC
Q 022298 211 HTVRVETFLERAEQFVGKDGPFDYMSVTP 239 (299)
Q Consensus 211 i~~D~~~~l~~~~~~~~~~~~fDlI~iDP 239 (299)
+..+....+.....+ -..||+|+...
T Consensus 95 ~~e~~~~ll~~~~~f---~~~fdiVI~t~ 120 (425)
T cd01493 95 VEESPEALLDNDPSF---FSQFTVVIATN 120 (425)
T ss_pred EecccchhhhhHHHH---hcCCCEEEECC
Confidence 555544332211001 15789888543
No 488
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=37.08 E-value=99 Score=30.08 Aligned_cols=60 Identities=17% Similarity=0.171 Sum_probs=37.9
Q ss_pred CCEEEEECCccchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH
Q 022298 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER 221 (299)
Q Consensus 156 ~~~VLDLfaGSGalgIEAlSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~ 221 (299)
+.+|+-+|+|- +--+..++|.-.+|.+||+|+..+ .+-+--+..+.--. .+.|+..+...
T Consensus 64 ghrivtigSGG-cn~L~ylsr~Pa~id~VDlN~ahi-Aln~lklaA~R~Lp----~h~dl~r~~a~ 123 (414)
T COG5379 64 GHRIVTIGSGG-CNMLAYLSRAPARIDVVDLNPAHI-ALNRLKLAAFRHLP----SHEDLVRFFAL 123 (414)
T ss_pred CcEEEEecCCc-chHHHHhhcCCceeEEEeCCHHHH-HHHHHHHHHHhhcc----cchhhHHHhhh
Confidence 56777776553 325567888777899999999876 55555555443211 23466666543
No 489
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=37.06 E-value=39 Score=31.83 Aligned_cols=97 Identities=14% Similarity=0.073 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCCEEEEECCccchHHHHHHH-----cCCCEEEEEeCCHHHHHHHHHHHHHHhCC
Q 022298 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-----RGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204 (299)
Q Consensus 130 RPttd~Vrealfn~L~~~~~~~~~~~~~~VLDLfaGSGalgIEAlS-----rGa~~V~~VD~n~~Al~~~a~~N~~~~g~ 204 (299)
.|-..++..+++--+.+.. ...+.+||=|+|++|.--- -.| .|. |++||.++++= +.+ -|+.+-.
T Consensus 135 nPfrSKLAA~I~gGvdnih----ikpGsKVLYLGAasGttVS-HvSDiVGpeG~--VYAVEfs~rsG-RdL-~nmAkkR- 204 (317)
T KOG1596|consen 135 NPFRSKLAAGILGGVDNIH----IKPGSKVLYLGAASGTTVS-HVSDIVGPEGC--VYAVEFSHRSG-RDL-INMAKKR- 204 (317)
T ss_pred ChHHHHHHHHhhcCcccee----ecCCceEEEeeccCCceee-hhhcccCCCce--EEEEEecccch-HHH-HHHhhcc-
Confidence 4444555555544333210 1358999999999996432 233 244 99999999875 333 3443322
Q ss_pred CCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcCCC
Q 022298 205 LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPY 241 (299)
Q Consensus 205 ~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDPPY 241 (299)
.| +..+.-|+...-+. ..+ -...|+||.|-|-
T Consensus 205 tN-iiPIiEDArhP~KY-Rml---VgmVDvIFaDvaq 236 (317)
T KOG1596|consen 205 TN-IIPIIEDARHPAKY-RML---VGMVDVIFADVAQ 236 (317)
T ss_pred CC-ceeeeccCCCchhe-eee---eeeEEEEeccCCC
Confidence 23 44455676543221 111 2468999998764
No 490
>PRK09072 short chain dehydrogenase; Provisional
Probab=36.83 E-value=2e+02 Score=25.46 Aligned_cols=80 Identities=13% Similarity=0.106 Sum_probs=46.4
Q ss_pred CCCEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH--H-hhhcC
Q 022298 155 RPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER--A-EQFVG 227 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~--~-~~~~~ 227 (299)
.+.++|=.| |+|.+|.+. +.+|+ +|+.++.++..+ +.+..-+ ...+++.++.+|+.+...- . .....
T Consensus 4 ~~~~vlItG-~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~-~~~~~~~---~~~~~~~~~~~D~~d~~~~~~~~~~~~~ 77 (263)
T PRK09072 4 KDKRVLLTG-ASGGIGQALAEALAAAGA-RLLLVGRNAEKL-EALAARL---PYPGRHRWVVADLTSEAGREAVLARARE 77 (263)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHH---hcCCceEEEEccCCCHHHHHHHHHHHHh
Confidence 455666554 456667653 45787 599999998765 5444333 2233567788887543211 0 00111
Q ss_pred CCCCeeEEEEcCCC
Q 022298 228 KDGPFDYMSVTPPY 241 (299)
Q Consensus 228 ~~~~fDlI~iDPPY 241 (299)
.+..|.++.+.-+
T Consensus 78 -~~~id~lv~~ag~ 90 (263)
T PRK09072 78 -MGGINVLINNAGV 90 (263)
T ss_pred -cCCCCEEEECCCC
Confidence 2568999987654
No 491
>PRK07041 short chain dehydrogenase; Provisional
Probab=36.33 E-value=2.3e+02 Score=24.43 Aligned_cols=72 Identities=17% Similarity=0.267 Sum_probs=43.0
Q ss_pred CccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEEcC
Q 022298 164 SGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP 239 (299)
Q Consensus 164 aGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~iDP 239 (299)
.|+|.+|... +++|+ +|+.++.++..+ +.+.+.++. + .+++++.+|+.+...... .....+++|.++.+.
T Consensus 4 Gas~~iG~~~a~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~-~--~~~~~~~~Dl~~~~~~~~-~~~~~~~id~li~~a 77 (230)
T PRK07041 4 GGSSGIGLALARAFAAEGA-RVTIASRSRDRL-AAAARALGG-G--APVRTAALDITDEAAVDA-FFAEAGPFDHVVITA 77 (230)
T ss_pred cCCChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHhc-C--CceEEEEccCCCHHHHHH-HHHhcCCCCEEEECC
Confidence 4567777654 35687 599999998765 555444431 2 346677888765432111 111225689999877
Q ss_pred CC
Q 022298 240 PY 241 (299)
Q Consensus 240 PY 241 (299)
-.
T Consensus 78 g~ 79 (230)
T PRK07041 78 AD 79 (230)
T ss_pred CC
Confidence 54
No 492
>PRK12743 oxidoreductase; Provisional
Probab=36.17 E-value=2.9e+02 Score=24.43 Aligned_cols=80 Identities=10% Similarity=0.103 Sum_probs=45.2
Q ss_pred CEEEEECCccchHHHHHH----HcCCCEEEEEe-CCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---HhhhcCC
Q 022298 157 GRWLDLYSGTGSVGIEAI----SRGCSEVHFVE-MDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFVGK 228 (299)
Q Consensus 157 ~~VLDLfaGSGalgIEAl----SrGa~~V~~VD-~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~~~ 228 (299)
+++|=.| |+|.+|.+++ ..|+ +|+.+. .+.... +.+.+.++..+ .++.++.+|+.+...- .......
T Consensus 3 k~vlItG-as~giG~~~a~~l~~~G~-~V~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (256)
T PRK12743 3 QVAIVTA-SDSGIGKACALLLAQQGF-DIGITWHSDEEGA-KETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQR 77 (256)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCC-EEEEEeCCChHHH-HHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 4566565 4666787754 4677 476664 455554 55555555554 3467788886543211 1111112
Q ss_pred CCCeeEEEEcCCC
Q 022298 229 DGPFDYMSVTPPY 241 (299)
Q Consensus 229 ~~~fDlI~iDPPY 241 (299)
.++.|.|+.+.-+
T Consensus 78 ~~~id~li~~ag~ 90 (256)
T PRK12743 78 LGRIDVLVNNAGA 90 (256)
T ss_pred cCCCCEEEECCCC
Confidence 2568999988754
No 493
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=35.54 E-value=2e+02 Score=26.50 Aligned_cols=77 Identities=10% Similarity=-0.113 Sum_probs=41.7
Q ss_pred CCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCC
Q 022298 156 PGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (299)
Q Consensus 156 ~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~ 231 (299)
+.++|=.| |+|.+|-.++ .+|. +|+++..++... ..........+...+++++.+|+.+...... . -+.
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~---~~~ 77 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGY-TINATVRDPKDR-KKTDHLLALDGAKERLKLFKADLLDEGSFEL-A---IDG 77 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCC-EEEEEEcCCcch-hhHHHHHhccCCCCceEEEeCCCCCchHHHH-H---HcC
Confidence 56677554 6777776543 4576 587777766543 2222111111222357788888875432111 1 135
Q ss_pred eeEEEEcC
Q 022298 232 FDYMSVTP 239 (299)
Q Consensus 232 fDlI~iDP 239 (299)
.|+||..-
T Consensus 78 ~d~vih~A 85 (325)
T PLN02989 78 CETVFHTA 85 (325)
T ss_pred CCEEEEeC
Confidence 78888654
No 494
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=35.19 E-value=2.2e+02 Score=23.66 Aligned_cols=63 Identities=17% Similarity=0.049 Sum_probs=41.4
Q ss_pred ECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCCCeeEEEE
Q 022298 162 LYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV 237 (299)
Q Consensus 162 LfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~~fDlI~i 237 (299)
++.|||.+|-..+ ++|. +|+++=.++... .. ..+++++.+|+.+...-...+ ..+|.||.
T Consensus 3 V~GatG~vG~~l~~~L~~~~~-~V~~~~R~~~~~-~~----------~~~~~~~~~d~~d~~~~~~al----~~~d~vi~ 66 (183)
T PF13460_consen 3 VFGATGFVGRALAKQLLRRGH-EVTALVRSPSKA-ED----------SPGVEIIQGDLFDPDSVKAAL----KGADAVIH 66 (183)
T ss_dssp EETTTSHHHHHHHHHHHHTTS-EEEEEESSGGGH-HH----------CTTEEEEESCTTCHHHHHHHH----TTSSEEEE
T ss_pred EECCCChHHHHHHHHHHHCCC-EEEEEecCchhc-cc----------ccccccceeeehhhhhhhhhh----hhcchhhh
Confidence 4677898886643 5674 799998888764 32 235889999987653211111 36888886
Q ss_pred cCC
Q 022298 238 TPP 240 (299)
Q Consensus 238 DPP 240 (299)
--+
T Consensus 67 ~~~ 69 (183)
T PF13460_consen 67 AAG 69 (183)
T ss_dssp CCH
T ss_pred hhh
Confidence 554
No 495
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=34.28 E-value=1.8e+02 Score=26.57 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=25.7
Q ss_pred CCCEEEEECCc-cchHHHHHHH-cCCCEEEEEeCCHHHHHHHHH
Q 022298 155 RPGRWLDLYSG-TGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLI 196 (299)
Q Consensus 155 ~~~~VLDLfaG-SGalgIEAlS-rGa~~V~~VD~n~~Al~~~a~ 196 (299)
.+.+||..++| .|...+++++ +|+ +|++++.+++.. +.++
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~-~~~~ 206 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKL-ELAK 206 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHH-HHHH
Confidence 46788886543 2444444444 576 499999988775 5554
No 496
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=33.88 E-value=2.4e+02 Score=25.32 Aligned_cols=83 Identities=11% Similarity=-0.028 Sum_probs=44.3
Q ss_pred CCCCEEEEECC-ccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---Hhhh
Q 022298 154 LRPGRWLDLYS-GTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQF 225 (299)
Q Consensus 154 ~~~~~VLDLfa-GSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~ 225 (299)
+.+..+|=-|+ |++.+|.+.+ .+|+ +|+.+..+.+.. +.+++-.+..+ ....+++|+.+.-.- ....
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~ 78 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVVDKLE-ERVRKMAAELD---SELVFRCDVASDDEINQVFADL 78 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCcHHHH-HHHHHHHhccC---CceEEECCCCCHHHHHHHHHHH
Confidence 35677887776 4666776644 5787 577776554332 33333222222 133567776543211 1111
Q ss_pred cCCCCCeeEEEEcCCC
Q 022298 226 VGKDGPFDYMSVTPPY 241 (299)
Q Consensus 226 ~~~~~~fDlI~iDPPY 241 (299)
....++.|+++.|.-.
T Consensus 79 ~~~~g~iD~lVnnAG~ 94 (261)
T PRK08690 79 GKHWDGLDGLVHSIGF 94 (261)
T ss_pred HHHhCCCcEEEECCcc
Confidence 1123579999988744
No 497
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=33.82 E-value=1.9e+02 Score=24.81 Aligned_cols=82 Identities=15% Similarity=0.144 Sum_probs=47.4
Q ss_pred CCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHH--H-HhhhcC
Q 022298 155 RPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--R-AEQFVG 227 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~--~-~~~~~~ 227 (299)
.+.++| +-.|+|.+|.+.+ ++|.. |+.++.++... +.+...++..+ .+..++.+|+.+... . ......
T Consensus 4 ~~~~il-ItGasg~iG~~l~~~l~~~g~~-v~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (246)
T PRK05653 4 QGKTAL-VTGASRGIGRAIALRLAADGAK-VVIYDSNEEAA-EALAAELRAAG--GEARVLVFDVSDEAAVRALIEAAVE 78 (246)
T ss_pred CCCEEE-EECCCcHHHHHHHHHHHHCCCE-EEEEeCChhHH-HHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence 356777 4455888887753 56874 99999998775 54444444333 236677787653321 1 000001
Q ss_pred CCCCeeEEEEcCCC
Q 022298 228 KDGPFDYMSVTPPY 241 (299)
Q Consensus 228 ~~~~fDlI~iDPPY 241 (299)
.....|.|+...-+
T Consensus 79 ~~~~id~vi~~ag~ 92 (246)
T PRK05653 79 AFGALDILVNNAGI 92 (246)
T ss_pred HhCCCCEEEECCCc
Confidence 12457888876543
No 498
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=33.70 E-value=2.3e+02 Score=24.41 Aligned_cols=80 Identities=11% Similarity=-0.007 Sum_probs=46.1
Q ss_pred CCCEEEEECCccchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH---hhhcC
Q 022298 155 RPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA---EQFVG 227 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAl----SrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~---~~~~~ 227 (299)
.+.++|=.|+ +|.+|..++ +.|+ +|++++.++... ..+.+.+... .++.++.+|+.+..... .....
T Consensus 4 ~~~~vlItGa-~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~ 77 (238)
T PRK05786 4 KGKKVAIIGV-SEGLGYAVAYFALKEGA-QVCINSRNENKL-KRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAK 77 (238)
T ss_pred CCcEEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHH
Confidence 4678887776 466666543 4687 699999998876 5554444332 23667778765432111 00000
Q ss_pred CCCCeeEEEEcCC
Q 022298 228 KDGPFDYMSVTPP 240 (299)
Q Consensus 228 ~~~~fDlI~iDPP 240 (299)
..+..|.++.+..
T Consensus 78 ~~~~id~ii~~ag 90 (238)
T PRK05786 78 VLNAIDGLVVTVG 90 (238)
T ss_pred HhCCCCEEEEcCC
Confidence 1245688886664
No 499
>PRK08643 acetoin reductase; Validated
Probab=33.32 E-value=3.3e+02 Score=23.84 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=47.0
Q ss_pred CEEEEECCccchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH---HhhhcCCC
Q 022298 157 GRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFVGKD 229 (299)
Q Consensus 157 ~~VLDLfaGSGalgIEA----lSrGa~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~---~~~~~~~~ 229 (299)
+++| +-.|+|.+|.+. +++|+ +|+.++.+.... +.+...+...+ .++.++.+|+.+.... ........
T Consensus 3 k~~l-ItGas~giG~~la~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (256)
T PRK08643 3 KVAL-VTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETA-QAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTF 77 (256)
T ss_pred CEEE-EECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3445 345666677654 35687 699999998776 56666665443 2356778887543211 11111112
Q ss_pred CCeeEEEEcCCC
Q 022298 230 GPFDYMSVTPPY 241 (299)
Q Consensus 230 ~~fDlI~iDPPY 241 (299)
++.|+++.+.-+
T Consensus 78 ~~id~vi~~ag~ 89 (256)
T PRK08643 78 GDLNVVVNNAGV 89 (256)
T ss_pred CCCCEEEECCCC
Confidence 568999987654
No 500
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=33.26 E-value=1.7e+02 Score=28.52 Aligned_cols=74 Identities=18% Similarity=0.094 Sum_probs=42.7
Q ss_pred CCCEEEEECCccchHHHHHH---Hc-CCCEEEEEeCCHHHHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHhhhcCCCC
Q 022298 155 RPGRWLDLYSGTGSVGIEAI---SR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230 (299)
Q Consensus 155 ~~~~VLDLfaGSGalgIEAl---Sr-Ga~~V~~VD~n~~Al~~~a~~N~~~~g~~~~~~vi~~D~~~~l~~~~~~~~~~~ 230 (299)
...+++=+ |.|.+|...+ +. |. .|+.+|.|++.+ +.+++.. . .+.++.+|+.+...... ..-.
T Consensus 230 ~~~~iiIi--G~G~~g~~l~~~L~~~~~-~v~vid~~~~~~-~~~~~~~-----~-~~~~i~gd~~~~~~L~~---~~~~ 296 (453)
T PRK09496 230 PVKRVMIV--GGGNIGYYLAKLLEKEGY-SVKLIERDPERA-EELAEEL-----P-NTLVLHGDGTDQELLEE---EGID 296 (453)
T ss_pred CCCEEEEE--CCCHHHHHHHHHHHhCCC-eEEEEECCHHHH-HHHHHHC-----C-CCeEEECCCCCHHHHHh---cCCc
Confidence 35667655 4577776543 33 55 699999999986 6555431 1 24567788754321110 0124
Q ss_pred CeeEEEEcCCC
Q 022298 231 PFDYMSVTPPY 241 (299)
Q Consensus 231 ~fDlI~iDPPY 241 (299)
.+|.|++-.+-
T Consensus 297 ~a~~vi~~~~~ 307 (453)
T PRK09496 297 EADAFIALTND 307 (453)
T ss_pred cCCEEEECCCC
Confidence 67777776553
Done!