Your job contains 1 sequence.
>022299
MTMLSLNSASWGSASCTKGLQFSPTKIPFGVFKILRARCSSSSSGGNNREPIANYAGVQL
EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC
TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT
LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSE
QFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASIK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 022299
(299 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2204355 - symbol:AT1G76050 species:3702 "Arabi... 908 4.5e-91 1
TIGR_CMR|GSU_0082 - symbol:GSU_0082 "ribosomal large subu... 235 7.5e-42 2
TIGR_CMR|CHY_1505 - symbol:CHY_1505 "ribosomal large subu... 243 9.3e-38 2
TIGR_CMR|DET_1375 - symbol:DET_1375 "ribosomal large subu... 212 2.2e-36 2
UNIPROTKB|Q4K5V9 - symbol:rluD "Pseudouridine synthase" s... 224 2.1e-32 2
UNIPROTKB|P33643 - symbol:rluD "23S rRNA pseudouridine sy... 230 5.5e-32 2
TIGR_CMR|CPS_3915 - symbol:CPS_3915 "ribosomal large subu... 228 2.3e-31 2
UNIPROTKB|Q9KU20 - symbol:rluD "Ribosomal large subunit p... 232 1.3e-30 2
TIGR_CMR|VC_0709 - symbol:VC_0709 "ribosomal large subuni... 232 1.3e-30 2
TIGR_CMR|SPO_1408 - symbol:SPO_1408 "ribosomal large subu... 319 1.2e-28 1
TIGR_CMR|CBU_0757 - symbol:CBU_0757 "ribosomal large subu... 187 1.7e-25 2
TIGR_CMR|ECH_0486 - symbol:ECH_0486 "ribosomal large subu... 163 1.5e-22 2
TIGR_CMR|APH_0362 - symbol:APH_0362 "ribosomal large subu... 170 8.5e-22 2
TIGR_CMR|NSE_0146 - symbol:NSE_0146 "ribosomal large subu... 160 1.1e-21 2
TIGR_CMR|CJE_1416 - symbol:CJE_1416 "ribosomal large subu... 152 8.7e-21 2
TIGR_CMR|APH_0549 - symbol:APH_0549 "ribosomal large subu... 135 4.5e-14 2
TIGR_CMR|GSU_3353 - symbol:GSU_3353 "RNA pseudouridine sy... 135 9.2e-14 2
UNIPROTKB|Q9KQH0 - symbol:rluC "Ribosomal large subunit p... 111 2.6e-11 2
TIGR_CMR|VC_2028 - symbol:VC_2028 "ribosomal large subuni... 111 2.6e-11 2
DICTYBASE|DDB_G0280463 - symbol:DDB_G0280463 "Ribosomal l... 156 5.9e-11 3
TIGR_CMR|ECH_0774 - symbol:ECH_0774 "ribosomal large subu... 121 1.3e-10 2
TIGR_CMR|SPO_0516 - symbol:SPO_0516 "ribosomal large subu... 118 1.9e-10 2
UNIPROTKB|Q4KFS5 - symbol:rluC "Pseudouridine synthase" s... 121 2.4e-10 2
TIGR_CMR|CPS_0536 - symbol:CPS_0536 "RNA pseudouridine sy... 132 8.8e-10 2
UNIPROTKB|P0AA39 - symbol:rluC species:83333 "Escherichia... 113 1.1e-09 2
TIGR_CMR|CHY_1119 - symbol:CHY_1119 "ribosomal large subu... 102 1.7e-09 2
TIGR_CMR|CBU_0487 - symbol:CBU_0487 "ribosomal large subu... 115 1.9e-09 2
UNIPROTKB|Q9KN61 - symbol:VC_A0104 "Pseudouridine synthas... 119 4.6e-09 2
TIGR_CMR|VC_A0104 - symbol:VC_A0104 "ribosomal large subu... 119 4.6e-09 2
UNIPROTKB|Q9KP71 - symbol:rluA "Ribosomal large subunit p... 126 7.6e-09 2
TIGR_CMR|VC_2505 - symbol:VC_2505 "ribosomal large subuni... 126 7.6e-09 2
TIGR_CMR|CPS_2290 - symbol:CPS_2290 "ribosomal large subu... 102 1.0e-08 2
ZFIN|ZDB-GENE-040801-238 - symbol:zgc:92006 "zgc:92006" s... 132 1.4e-08 2
TIGR_CMR|SPO_3392 - symbol:SPO_3392 "ribosomal large subu... 111 5.5e-08 2
TIGR_CMR|GSU_0671 - symbol:GSU_0671 "ribosomal large subu... 101 6.0e-08 2
SGD|S000002194 - symbol:PUS9 "Mitochondrial tRNA:pseudour... 107 1.2e-07 2
TIGR_CMR|CPS_4520 - symbol:CPS_4520 "ribosomal large subu... 115 1.6e-07 2
UNIPROTKB|P0AA37 - symbol:rluA species:83333 "Escherichia... 111 2.5e-07 2
SGD|S000005427 - symbol:RIB2 "Bifunctional DRAP deaminase... 97 1.0e-06 2
UNIPROTKB|E1BYI6 - symbol:RPUSD4 "Uncharacterized protein... 109 1.1e-06 2
MGI|MGI:1919239 - symbol:Rpusd4 "RNA pseudouridylate synt... 106 3.9e-06 2
UNIPROTKB|E9PML2 - symbol:RPUSD4 "RNA pseudouridylate syn... 104 5.1e-06 2
RGD|1311268 - symbol:Rpusd4 "RNA pseudouridylate synthase... 106 6.3e-06 2
UNIPROTKB|Q96CM3 - symbol:RPUSD4 "RNA pseudouridylate syn... 104 6.7e-06 2
UNIPROTKB|F1S6H1 - symbol:LOC100737111 "Uncharacterized p... 100 1.5e-05 2
TIGR_CMR|NSE_0556 - symbol:NSE_0556 "ribosomal large subu... 85 1.6e-05 2
DICTYBASE|DDB_G0281097 - symbol:DDB_G0281097 "pseudouridi... 104 2.2e-05 2
UNIPROTKB|E2R2N3 - symbol:RPUSD4 "Uncharacterized protein... 100 4.0e-05 2
UNIPROTKB|F1P0G3 - symbol:RPUSD2 "Uncharacterized protein... 92 4.1e-05 2
FB|FBgn0032256 - symbol:RluA-2 "RluA-2" species:7227 "Dro... 100 4.3e-05 2
UNIPROTKB|G4MYD1 - symbol:MGG_08117 "DRAP deaminase" spec... 99 5.1e-05 2
CGD|CAL0002400 - symbol:orf19.3177 species:5476 "Candida ... 107 5.4e-05 2
TIGR_CMR|GSU_3160 - symbol:GSU_3160 "RNA pseudouridine sy... 98 6.6e-05 2
UNIPROTKB|Q5E9Z1 - symbol:RPUSD4 "RNA pseudouridylate syn... 98 6.7e-05 2
UNIPROTKB|F6XEH2 - symbol:RPUSD4 "Uncharacterized protein... 100 8.0e-05 2
RGD|1306147 - symbol:Rpusd2 "RNA pseudouridylate synthase... 95 0.00010 2
SGD|S000003401 - symbol:PUS6 "tRNA:pseudouridine synthase... 86 0.00011 2
UNIPROTKB|F1N088 - symbol:RPUSD2 "Uncharacterized protein... 95 0.00016 2
MGI|MGI:1918066 - symbol:Rpusd2 "RNA pseudouridylate synt... 93 0.00017 2
FB|FBgn0051719 - symbol:RluA-1 "RluA-1" species:7227 "Dro... 89 0.00018 2
WB|WBGene00019498 - symbol:K07E8.7 species:6239 "Caenorha... 88 0.00020 2
UNIPROTKB|Q8IZ73 - symbol:RPUSD2 "RNA pseudouridylate syn... 92 0.00021 2
CGD|CAL0004292 - symbol:orf19.2788 species:5476 "Candida ... 85 0.00037 2
UNIPROTKB|Q59PV5 - symbol:CaO19.2788 "Putative uncharacte... 85 0.00037 2
TIGR_CMR|CJE_0808 - symbol:CJE_0808 "RNA pseudouridine sy... 95 0.00049 2
UNIPROTKB|Q9KRH4 - symbol:VC1668 "Pseudouridine synthase"... 103 0.00053 2
TIGR_CMR|VC_1668 - symbol:VC_1668 "pseudouridine synthase... 103 0.00053 2
UNIPROTKB|F1PK69 - symbol:RPUSD2 "Uncharacterized protein... 88 0.00061 2
POMBASE|SPAC18B11.02c - symbol:SPAC18B11.02c "tRNA pseudo... 104 0.00084 2
ASPGD|ASPL0000068180 - symbol:AN10936 species:162425 "Eme... 87 0.00086 2
>TAIR|locus:2204355 [details] [associations]
symbol:AT1G76050 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 EMBL:AC007396 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 KO:K15452 EMBL:BX816325
EMBL:AK117781 IPI:IPI00528093 IPI:IPI00545612 RefSeq:NP_177732.2
RefSeq:NP_974151.1 UniGene:At.34707 UniGene:At.68569
UniGene:At.71876 ProteinModelPortal:Q3ECD0 SMR:Q3ECD0 STRING:Q3ECD0
PRIDE:Q3ECD0 EnsemblPlants:AT1G76050.2 GeneID:843937
KEGG:ath:AT1G76050 TAIR:At1g76050 InParanoid:Q3ECD0 OMA:GHCTDLS
PhylomeDB:Q3ECD0 ProtClustDB:CLSN2918520 Genevestigator:Q3ECD0
TIGRFAMs:TIGR00005 Uniprot:Q3ECD0
Length = 430
Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
Identities = 179/251 (71%), Positives = 201/251 (80%)
Query: 51 PIANYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSH 110
P N AG+++EE VD GK+RLD+WISSRI+G+SRARVQSSIR GLV++NG+VV KVSH
Sbjct: 62 PRVNNAGLRIEEIVDAAKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVSH 121
Query: 111 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 170
NVK GD VNCTISELQPL+AEAEDIPLDIVYED +VLVVNKPAHMVVHPAPGN TGTLVN
Sbjct: 122 NVKSGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVN 181
Query: 171 GILHHCSLPTLASSNQXXXXXXXXXXXXX----XXXXXXXGASIRPGIVHRLDKGTSGLL 226
GILHHCSLP + SN AS+RPGIVHRLDKGT+GLL
Sbjct: 182 GILHHCSLPCVDYSNSEEDDDSDEETFSDDEEMTTSPSSYAASVRPGIVHRLDKGTTGLL 241
Query: 227 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 286
VVAKDEHSHAHL+EQFKLHTIERVY+SLT+GVPS GRIE+PI RD +NRIRMAAIPG
Sbjct: 242 VVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRDSSNRIRMAAIPGG 301
Query: 287 NKHGQARHAAS 297
+ G+ARHAAS
Sbjct: 302 VRGGRARHAAS 312
>TIGR_CMR|GSU_0082 [details] [associations]
symbol:GSU_0082 "ribosomal large subunit pseudouridine
synthase D" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT RefSeq:NP_951144.1
ProteinModelPortal:Q74H11 GeneID:2688326 KEGG:gsu:GSU0082
PATRIC:22022908 ProtClustDB:CLSK827625
BioCyc:GSUL243231:GH27-34-MONOMER Uniprot:Q74H11
Length = 322
Score = 235 (87.8 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 49/115 (42%), Positives = 75/115 (65%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
+V T+ RLD +++ + GI+R+ Q I G V+++ ++ K S ++GG+ V T+
Sbjct: 11 SVPTEGEAERLDQFVARSVQGITRSAAQRLIEEGRVTVDDRL-EKPSLKLRGGERVVVTV 69
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
P EAE+IPL +++ED +V+VV+KPA MVVHPA GN GTLVN +L HC+
Sbjct: 70 PPPAPAVPEAEEIPLVVLHEDGDVVVVDKPAGMVVHPAAGNPGGTLVNALLAHCT 124
Score = 225 (84.3 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 46/91 (50%), Positives = 62/91 (68%)
Query: 207 GASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRI 266
G IRPGIVHR+DK TSG+LVVAK + +H LS QF HT++RVY++L G P + GRI
Sbjct: 130 GGEIRPGIVHRIDKDTSGVLVVAKSDRAHESLSRQFHDHTVKRVYLALVYGSPREDKGRI 189
Query: 267 EVPISRDPNNRIRMAAIPGSNKHGQARHAAS 297
E I R P +R +M+ G+ +HG +HA +
Sbjct: 190 EGAIGRHPTDRKKMS---GAARHG--KHAVT 215
>TIGR_CMR|CHY_1505 [details] [associations]
symbol:CHY_1505 "ribosomal large subunit pseudouridine
synthase, RluA family" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0001522 "pseudouridine synthesis"
evidence=ISS] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0009982 "pseudouridine synthase activity" evidence=ISS]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT
RefSeq:YP_360337.1 ProteinModelPortal:Q3ABZ7 STRING:Q3ABZ7
GeneID:3727865 KEGG:chy:CHY_1505 PATRIC:21276139
BioCyc:CHYD246194:GJCN-1504-MONOMER Uniprot:Q3ABZ7
Length = 305
Score = 243 (90.6 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
Identities = 49/119 (41%), Positives = 82/119 (68%)
Query: 59 QLEETVDTKAGKLRLDAWISSRID-GISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
+++ V+++ LRLD +++ + + +SR+ ++ I G V++NG + K S+ V+GG++
Sbjct: 4 EIKVVVNSEYSGLRLDKFLAEQEELELSRSFIKKLIEEGKVTVNG-LHRKASYKVRGGEI 62
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176
+ + + L + E+IPLDIVYED++++VVNK A MVVHPA GN GTLVN +L+HC
Sbjct: 63 IAVLLPPPRELSVKPEEIPLDIVYEDEDLVVVNKKAGMVVHPAEGNWDGTLVNALLYHC 121
Score = 178 (67.7 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
Identities = 37/77 (48%), Positives = 49/77 (63%)
Query: 207 GASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRI 266
G +RPGIVHRLDK TSGLLVVAK++ +H L+EQ K R Y ++ G G I
Sbjct: 128 GGVLRPGIVHRLDKDTSGLLVVAKNDLAHQSLAEQIKEKKAVREYWTIVHGYLKNKEGII 187
Query: 267 EVPISRDPNNRIRMAAI 283
++PI R P +R +MA +
Sbjct: 188 DLPIGRHPRDRQKMAVV 204
>TIGR_CMR|DET_1375 [details] [associations]
symbol:DET_1375 "ribosomal large subunit pseudouridine
synthase, RluA family" species:243164 "Dehalococcoides ethenogenes
195" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_182086.1
ProteinModelPortal:Q3Z6R3 STRING:Q3Z6R3 GeneID:3229324
KEGG:det:DET1375 PATRIC:21609777 OMA:DTITIEI ProtClustDB:CLSK836936
BioCyc:DETH243164:GJNF-1376-MONOMER Uniprot:Q3Z6R3
Length = 300
Score = 212 (79.7 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 40/102 (39%), Positives = 67/102 (65%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +I+ + +SR+ +Q + +G + +NG+ +K S +K GD + I P +
Sbjct: 14 RLDKYITQKETDLSRSFIQELVEAGHIQVNGKN-AKPSLKLKNGDTITIEIPPETPPELK 72
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGIL 173
AEDIPL+I+++D ++L++NKP + VHPAPG+ TL+NG+L
Sbjct: 73 AEDIPLEIIFQDKDLLLINKPPGLTVHPAPGHPDHTLINGVL 114
Score = 196 (74.1 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 38/74 (51%), Positives = 52/74 (70%)
Query: 210 IRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVP 269
+RPGIVHRLDK TSGLL+VAK+ + A+LS QFK T+ + Y++L G + G IE P
Sbjct: 127 LRPGIVHRLDKDTSGLLLVAKNREALANLSAQFKERTVRKYYLTLVQGELHPAEGFIEAP 186
Query: 270 ISRDPNNRIRMAAI 283
+ RDP NR ++A +
Sbjct: 187 LGRDPQNRQKIAVV 200
>UNIPROTKB|Q4K5V9 [details] [associations]
symbol:rluD "Pseudouridine synthase" species:220664
"Pseudomonas protegens Pf-5" [GO:0006364 "rRNA processing"
evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:CP000076 GO:GO:0006364
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
RefSeq:YP_262374.2 GeneID:3479698 KEGG:pfl:PFL_5306 PATRIC:19880091
ProtClustDB:CLSK868730 BioCyc:PFLU220664:GIX8-5347-MONOMER
Uniprot:Q4K5V9
Length = 320
Score = 224 (83.9 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
Identities = 48/118 (40%), Positives = 74/118 (62%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
++L V ++ G RLD + SR+R+ + I+ G ++++G V+ + V GG +
Sbjct: 5 IELRAEVPSELGGQRLDQVAAQLFAEHSRSRLSAWIKDGRLTVDGAVI-RPRDIVHGGSI 63
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 175
+ T + A+DI LDIVYEDD++LV+NKPA +VVHPA G+A GTL+N +LHH
Sbjct: 64 LELTAEQEAQGEWIAQDIELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHH 121
Score = 146 (56.5 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
Identities = 32/78 (41%), Positives = 45/78 (57%)
Query: 211 RPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPI 270
R GIVHRLDK T+GL+VVAK + L Q + ++ R+Y + GV + + G+I PI
Sbjct: 130 RAGIVHRLDKDTTGLMVVAKTIQAQTQLVAQLQSRSVSRIYECIVIGVVT-AGGKINAPI 188
Query: 271 SRDPNNRIRMAAIPGSNK 288
R R RMA + G +
Sbjct: 189 GRHGQQRQRMAVMEGGKQ 206
>UNIPROTKB|P33643 [details] [associations]
symbol:rluD "23S rRNA pseudouridine synthase" species:83333
"Escherichia coli K-12" [GO:0000455 "enzyme-directed rRNA
pseudouridine synthesis" evidence=IMP] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IDA]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0000027 GO:GO:0009982 SUPFAM:SSF55120
EMBL:X57620 EMBL:U50134 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 GO:GO:0000455 PIR:E65037
RefSeq:NP_417085.1 RefSeq:YP_490818.1 PDB:1PRZ PDB:1QYU PDB:1V9F
PDB:2IST PDBsum:1PRZ PDBsum:1QYU PDBsum:1V9F PDBsum:2IST
ProteinModelPortal:P33643 SMR:P33643 DIP:DIP-10721N IntAct:P33643
PRIDE:P33643 EnsemblBacteria:EBESCT00000000818
EnsemblBacteria:EBESCT00000015233 GeneID:12934203 GeneID:947087
KEGG:ecj:Y75_p2543 KEGG:eco:b2594 PATRIC:32120591 EchoBASE:EB2022
EcoGene:EG12098 KO:K06180 OMA:KTIPAQT ProtClustDB:PRK11180
BioCyc:EcoCyc:EG12098-MONOMER BioCyc:ECOL316407:JW2576-MONOMER
BioCyc:MetaCyc:EG12098-MONOMER EvolutionaryTrace:P33643
Genevestigator:P33643 Uniprot:P33643
Length = 326
Score = 230 (86.0 bits), Expect = 5.5e-32, Sum P(2) = 5.5e-32
Identities = 48/119 (40%), Positives = 72/119 (60%)
Query: 58 VQLEETV-DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
VQL TV + + G+ RLD ++ SR+R++ I V +NG+V K V GG+
Sbjct: 5 VQLTATVSENQLGQ-RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGE 63
Query: 117 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 175
V + R E +DIPLDIVYED++++++NKP +VVHP GN GT++N +LH+
Sbjct: 64 QVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY 122
Score = 136 (52.9 bits), Expect = 5.5e-32, Sum P(2) = 5.5e-32
Identities = 32/74 (43%), Positives = 42/74 (56%)
Query: 211 RPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPI 270
R GIVHRLDK T+GL+VVAK + L E + I R Y ++ G + + G ++ PI
Sbjct: 131 RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVDEPI 189
Query: 271 SRDPNNRIRMAAIP 284
SR P R MA P
Sbjct: 190 SRHPTKRTHMAVHP 203
Score = 43 (20.2 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 228 VAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQ---SSGRIEVPISRDP 274
+ K +H + E F++HT R+ + L +G Q I P+ DP
Sbjct: 204 MGKPAVTHYRIMEHFRVHT--RLRLRLETGRTHQIRVHMAHITHPLVGDP 251
>TIGR_CMR|CPS_3915 [details] [associations]
symbol:CPS_3915 "ribosomal large subunit pseudouridine
synthase D" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT
ProtClustDB:PRK11180 RefSeq:YP_270573.1 ProteinModelPortal:Q47X97
SMR:Q47X97 STRING:Q47X97 GeneID:3521018 KEGG:cps:CPS_3915
PATRIC:21470721 BioCyc:CPSY167879:GI48-3928-MONOMER Uniprot:Q47X97
Length = 324
Score = 228 (85.3 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 58 VQLEETV-DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
+Q ++ V ++ GK R D ++ SR+R++ I +G V +NG V+ + GG+
Sbjct: 5 IQHQDIVPESCLGK-RFDQSLAIMFPDYSRSRIKDWILAGQVKVNGDVLLIPREKMYGGE 63
Query: 117 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 175
++ +R EA++IPL+IVYEDD +LV+NKPA +VVHP GN GTL+N +LHH
Sbjct: 64 EIDINAKVEAEIRFEAQNIPLNIVYEDDYILVINKPAGLVVHPGAGNPDGTLLNALLHH 122
Score = 132 (51.5 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 211 RPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPI 270
R GIVHRLDK T+GL+VVAK + +L + +L I R Y ++ +GV + + G ++ PI
Sbjct: 131 RAGIVHRLDKDTTGLMVVAKTIAAQTNLVDALQLREITREYEAVANGVMT-AGGLVDEPI 189
Query: 271 SRDPNNRIRMA 281
R R +MA
Sbjct: 190 GRHSTKRTQMA 200
Score = 44 (20.5 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
Identities = 14/62 (22%), Positives = 27/62 (43%)
Query: 216 HRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQ---SSGRIEVPISR 272
H + + + + +H + E+++LHT R+ + L +G Q I P+
Sbjct: 192 HSTKRTQMAVSYIGRPSVTHYRVMEKYRLHT--RLRLRLETGRTHQIRVHMSHITHPLVG 249
Query: 273 DP 274
DP
Sbjct: 250 DP 251
>UNIPROTKB|Q9KU20 [details] [associations]
symbol:rluD "Ribosomal large subunit pseudouridine synthase
D" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 ProtClustDB:PRK11180 PIR:G82289
RefSeq:NP_230358.1 ProteinModelPortal:Q9KU20 SMR:Q9KU20
DNASU:2615713 GeneID:2615713 KEGG:vch:VC0709 PATRIC:20080531
OMA:HEYVRER Uniprot:Q9KU20
Length = 324
Score = 232 (86.7 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 48/122 (39%), Positives = 80/122 (65%)
Query: 58 VQLEETV-DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
++L +TV D++ G+ RLD ++ SR+R++ + G +++NG V++K V GG+
Sbjct: 5 IELTQTVKDSQLGQ-RLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGE 63
Query: 117 MVNCTISELQP-LRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 175
++ +EL+ R EA+D+PL+IVYEDD+++V+NKP VVHP G A T++N +L H
Sbjct: 64 VITVQ-AELEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFH 122
Query: 176 CS 177
S
Sbjct: 123 YS 124
Score = 121 (47.7 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 30/79 (37%), Positives = 41/79 (51%)
Query: 211 RPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPI 270
R GIVHRLDK T+GL+VVAK + L + + R Y ++ G + + G I+ PI
Sbjct: 131 RAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMT-AGGMIDKPI 189
Query: 271 SRDPNNRIRMAAIPGSNKH 289
R R M+ P KH
Sbjct: 190 GRHSTKRTLMSVSP-MGKH 207
>TIGR_CMR|VC_0709 [details] [associations]
symbol:VC_0709 "ribosomal large subunit pseudouridine
synthase D" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 ProtClustDB:PRK11180 PIR:G82289
RefSeq:NP_230358.1 ProteinModelPortal:Q9KU20 SMR:Q9KU20
DNASU:2615713 GeneID:2615713 KEGG:vch:VC0709 PATRIC:20080531
OMA:HEYVRER Uniprot:Q9KU20
Length = 324
Score = 232 (86.7 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 48/122 (39%), Positives = 80/122 (65%)
Query: 58 VQLEETV-DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
++L +TV D++ G+ RLD ++ SR+R++ + G +++NG V++K V GG+
Sbjct: 5 IELTQTVKDSQLGQ-RLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGE 63
Query: 117 MVNCTISELQP-LRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 175
++ +EL+ R EA+D+PL+IVYEDD+++V+NKP VVHP G A T++N +L H
Sbjct: 64 VITVQ-AELEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFH 122
Query: 176 CS 177
S
Sbjct: 123 YS 124
Score = 121 (47.7 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 30/79 (37%), Positives = 41/79 (51%)
Query: 211 RPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPI 270
R GIVHRLDK T+GL+VVAK + L + + R Y ++ G + + G I+ PI
Sbjct: 131 RAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMT-AGGMIDKPI 189
Query: 271 SRDPNNRIRMAAIPGSNKH 289
R R M+ P KH
Sbjct: 190 GRHSTKRTLMSVSP-MGKH 207
>TIGR_CMR|SPO_1408 [details] [associations]
symbol:SPO_1408 "ribosomal large subunit pseudouridine
synthase D" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_166649.1
ProteinModelPortal:Q5LTK6 GeneID:3193242 KEGG:sil:SPO1408
PATRIC:23376131 OMA:CAHIGHP ProtClustDB:CLSK933544 Uniprot:Q5LTK6
Length = 342
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 92/251 (36%), Positives = 122/251 (48%)
Query: 62 ETVDTKAGKLRLDAWISSRID---GISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
E V A RLD +S + +SR R+ I G VS++GQVV+ V G V
Sbjct: 7 EFVIAAAPPPRLDKALSRDVPETAALSRTRLARLITEGAVSVDGQVVTDPKARVVEGAQV 66
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
++E + E IPL +VYEDD+++V++KPA MVVHPAPG +GTLVN +L HC
Sbjct: 67 AIALTEAEESHIAPEAIPLVVVYEDDDLIVIDKPAGMVVHPAPGTPSGTLVNALLAHCG- 125
Query: 179 PTLASSNQXXXXXXXXXXXXXXXXXXXXGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHL 238
N G RPGIVHR+DK TSGLLVVAK + +H L
Sbjct: 126 -----DN-----------------LSGVGGVKRPGIVHRIDKDTSGLLVVAKSDAAHHGL 163
Query: 239 SEQFKLHTIERVYISLTSGVPSQSSGRIE----------------VPISRDPNNRIRMAA 282
+ QF H+ ER Y +L GVP S R+ ++R P +R R A
Sbjct: 164 AAQFAAHSAERHYTALCYGVPDGSDPRLRGVKGASFEPGNILRLTTQLTRHPTDRQRQAV 223
Query: 283 IPGSNKHGQAR 293
+ +H R
Sbjct: 224 VFHGGRHAVTR 234
>TIGR_CMR|CBU_0757 [details] [associations]
symbol:CBU_0757 "ribosomal large subunit pseudouridine
synthase D" species:227377 "Coxiella burnetii RSA 493" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016829 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT RefSeq:YP_338280.2
GeneID:1208648 KEGG:cbu:CBU_0757 PATRIC:17930207
ProtClustDB:CLSK940427 BioCyc:CBUR227377:GJ7S-755-MONOMER
Uniprot:Q4AAY0
Length = 327
Score = 187 (70.9 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 38/119 (31%), Positives = 69/119 (57%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
++L++ + + RLD ++ SR+++Q+ IR G V ++G +K V+
Sbjct: 10 IELKKIIPPELAGARLDQVLAKLFPDYSRSQLQNWIRGGHVKVDGIQKTKAREKVRENQF 69
Query: 118 VNCTISELQPL-RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 175
+ ++L+P R + IPLD++YED+ +LV+NKP ++VHP G TL+N +LH+
Sbjct: 70 IEIE-AQLEPNERWVPQPIPLDVIYEDETLLVINKPVGLIVHPGAGVRDQTLINALLHY 127
Score = 146 (56.5 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 35/74 (47%), Positives = 45/74 (60%)
Query: 211 RPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGR-IEVP 269
R GI+HRLDK TSGLL++A+ SH L + K I R Y ++ GV SGR IE P
Sbjct: 136 RAGIIHRLDKDTSGLLLIARTLASHHALIKAMKARQIVREYEAIVKGV--LISGRTIEAP 193
Query: 270 ISRDPNNRIRMAAI 283
+ R P +R RMA +
Sbjct: 194 VGRHPIHRTRMAVV 207
>TIGR_CMR|ECH_0486 [details] [associations]
symbol:ECH_0486 "ribosomal large subunit pseudouridine
synthase, RluA family" species:205920 "Ehrlichia chaffeensis str.
Arkansas" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
OMA:HEYVRER RefSeq:YP_507302.1 ProteinModelPortal:Q2GGY1
STRING:Q2GGY1 GeneID:3927534 KEGG:ech:ECH_0486 PATRIC:20576444
ProtClustDB:CLSK749443 BioCyc:ECHA205920:GJNR-488-MONOMER
Uniprot:Q2GGY1
Length = 337
Score = 163 (62.4 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 39/126 (30%), Positives = 67/126 (53%)
Query: 54 NYAGVQLEETVDTKAG--KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHN 111
NY LE+ + K+G RLD +I+S+++ ISR +VQ I+ + + ++ +H
Sbjct: 10 NYNIKMLEKKIFIKSGDENNRLDKFIASKLN-ISRNQVQQLIKDSKILLFDTIIRDNNHI 68
Query: 112 VKGGDMVNCTI--SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLV 169
K D+ N +I + IP+ +VYED +++++NK + VHP G TLV
Sbjct: 69 TKVNDIYNISIPIKTISDTITPNHYIPISVVYEDHDIIIINKAPGITVHPGAGTNNNTLV 128
Query: 170 NGILHH 175
N ++ H
Sbjct: 129 NALVAH 134
Score = 155 (59.6 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 34/84 (40%), Positives = 51/84 (60%)
Query: 207 GASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRI 266
G + RPGI+HRLDK TSGL+V+AK+E S+ LS+ I++ Y+++ G+P+ S I
Sbjct: 143 GKATRPGIIHRLDKDTSGLMVIAKNEKSYYFLSDLLLKKQIKKEYLAVVWGLPNPKSNTI 202
Query: 267 EVPISRDPNNRIRMAA--IPGSNK 288
+ I PNN+ M +P K
Sbjct: 203 KNYICVKPNNKQMMTVTHLPHKGK 226
>TIGR_CMR|APH_0362 [details] [associations]
symbol:APH_0362 "ribosomal large subunit pseudouridine
synthase, RluA family" species:212042 "Anaplasma phagocytophilum
HZ" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
OMA:GVIRREY RefSeq:YP_504969.1 ProteinModelPortal:Q2GKY2
STRING:Q2GKY2 GeneID:3930557 KEGG:aph:APH_0362 PATRIC:20949328
ProtClustDB:CLSK2463740 BioCyc:APHA212042:GHPM-391-MONOMER
Uniprot:Q2GKY2
Length = 324
Score = 170 (64.9 bits), Expect = 8.5e-22, Sum P(2) = 8.5e-22
Identities = 41/118 (34%), Positives = 63/118 (53%)
Query: 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISEL-QPL 128
K RLD IS+ ++ ISR++ Q I G V++ V SH GD+ T+ + Q
Sbjct: 15 KKRLDVLISASLN-ISRSKAQCIISDGGVTLLDTPVLNNSHLTNTGDVYTVTVPDTPQST 73
Query: 129 RAEAE-DIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSN 185
+ DIPL I+YED++++V++K ++ VHP G TL + +L HC A N
Sbjct: 74 SIDPNHDIPLHIIYEDEHIIVIDKAPNIAVHPGHGTKNDTLAHALLAHCGNALCAVGN 131
Score = 137 (53.3 bits), Expect = 8.5e-22, Sum P(2) = 8.5e-22
Identities = 30/88 (34%), Positives = 47/88 (53%)
Query: 207 GASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRI 266
G S RPGI+HRLDK TSGL+V+AK E ++ LS+ + + Y++L GVP+ I
Sbjct: 130 GNSHRPGIIHRLDKDTSGLMVIAKTEKAYLVLSQALEEKKFRKEYLALIWGVPTTKHCFI 189
Query: 267 EVPISRDPNNRIRMAAIPGSNKHGQARH 294
+ + +++ M KH +
Sbjct: 190 QTNLDVKRSDKTMMEVTLSRGKHANTEY 217
>TIGR_CMR|NSE_0146 [details] [associations]
symbol:NSE_0146 "ribosomal large subunit pseudouridine
synthases, RluA family" species:222891 "Neorickettsia sennetsu str.
Miyayama" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR006145 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_506045.1
ProteinModelPortal:Q2GEQ1 STRING:Q2GEQ1 GeneID:3931949
KEGG:nse:NSE_0146 PATRIC:22680393 OMA:GVIRREY
ProtClustDB:CLSK2527656 BioCyc:NSEN222891:GHFU-181-MONOMER
Uniprot:Q2GEQ1
Length = 330
Score = 160 (61.4 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 33/64 (51%), Positives = 41/64 (64%)
Query: 209 SIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEV 268
S RPGIVHRLDK T+G L+VAK +H LS+ K I R Y++L VP+ SG I+
Sbjct: 128 SSRPGIVHRLDKDTAGFLIVAKTNPAHLSLSQMIKEGVIRREYLALVHSVPASLSGEIKK 187
Query: 269 PISR 272
PI R
Sbjct: 188 PIKR 191
Score = 150 (57.9 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 40/116 (34%), Positives = 60/116 (51%)
Query: 68 AGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQP 127
AG RLD ++ + SR+ ++ I+ + G++ + S V G+ + L+
Sbjct: 11 AGN-RLDVFLHRCLPFFSRSFIKHCIKGSRIESEGKIQLEPSRRVVVGEEYHLFDLPLER 69
Query: 128 LRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
A PLD+ YEDD +LV+ KPA +VVHP GN TLVN + HH L+S
Sbjct: 70 KPRHAFVQPLDVRYEDDCLLVIYKPAGLVVHPGIGNREQTLVNILEHHYPTEKLSS 125
>TIGR_CMR|CJE_1416 [details] [associations]
symbol:CJE_1416 "ribosomal large subunit pseudouridine
synthases, RluA family" species:195099 "Campylobacter jejuni
RM1221" [GO:0009451 "RNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0004730 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
OMA:VSGREDR RefSeq:YP_179402.1 ProteinModelPortal:Q5HTI3
STRING:Q5HTI3 GeneID:3231922 KEGG:cjr:CJE1416 PATRIC:20044634
ProtClustDB:CLSK872435 BioCyc:CJEJ195099:GJC0-1443-MONOMER
Uniprot:Q5HTI3
Length = 322
Score = 152 (58.6 bits), Expect = 8.7e-21, Sum P(2) = 8.7e-21
Identities = 33/104 (31%), Positives = 64/104 (61%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISEL-QPLRA 130
RLD +++ +++ SR +V I V +N ++ K S +K GD+++ +L ++
Sbjct: 11 RLDVFLAKKLNQ-SRNQVALLIEKDCVQVNDKIQDKNSFKLKNGDIISIASLKLCNEIKP 69
Query: 131 EAE-DIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGIL 173
+ E D +D++YED+++LV+NKP+++VVH A TLV+ ++
Sbjct: 70 QFEVDFDIDVLYEDEDLLVLNKPSNLVVHGASSVKNATLVDWLI 113
Score = 151 (58.2 bits), Expect = 8.7e-21, Sum P(2) = 8.7e-21
Identities = 34/92 (36%), Positives = 52/92 (56%)
Query: 207 GASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRI 266
G IR G+VHRLDK TSG +++AK+ +H LSEQ ++ R+Y++L + +
Sbjct: 123 GGEIRAGLVHRLDKDTSGSILIAKNNFTHQKLSEQLADKSMGRIYLALIDLPLKEDKIIV 182
Query: 267 EVPISRDPNNRIRMAAIPGSNKHGQARHAASI 298
E + R P+N I+ AI NK + +A I
Sbjct: 183 EKFLMRSPSNAIKKIAIDKENKFSKNAKSAFI 214
>TIGR_CMR|APH_0549 [details] [associations]
symbol:APH_0549 "ribosomal large subunit pseudouridine
synthase C" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_505141.1
ProteinModelPortal:Q2GKG0 STRING:Q2GKG0 GeneID:3930562
KEGG:aph:APH_0549 PATRIC:20949758 OMA:YMIATIN
ProtClustDB:CLSK747316 BioCyc:APHA212042:GHPM-573-MONOMER
Uniprot:Q2GKG0
Length = 297
Score = 135 (52.6 bits), Expect = 4.5e-14, Sum P(2) = 4.5e-14
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 214 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRD 273
IVHRLD+ TSG+L++A+ + LSE+ + + + YI++T GVP+ S G I +PI
Sbjct: 121 IVHRLDRDTSGVLIIARGQSIARILSEELRFRRVRKEYIAVTKGVPAFSKGEITMPIYCK 180
Query: 274 PNNRIRMAAIPGSNK 288
+ + IP K
Sbjct: 181 KQSGVGETLIPKEAK 195
Score = 106 (42.4 bits), Expect = 4.5e-14, Sum P(2) = 4.5e-14
Identities = 26/93 (27%), Positives = 51/93 (54%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC-TISELQPLR 129
+RLD ++ S + G+ +A V+ +R G + +N + S V+ GD V+ + ++
Sbjct: 1 MRLDRYVRSILPGVPQALVEKLLRKGEIRLNSSK-ALASSRVQRGDTVSIRNVDKIASRS 59
Query: 130 AEAEDIPLD---------IVYEDDNVLVVNKPA 153
EA+++ D I+Y+D+N++ +NKPA
Sbjct: 60 KEAKEVHDDALLRLVSDNIIYKDENIIAINKPA 92
Score = 38 (18.4 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 111 NVKGGDMVNCTISEL 125
NV+GG V+ ++S+L
Sbjct: 95 NVQGGTKVSISLSDL 109
>TIGR_CMR|GSU_3353 [details] [associations]
symbol:GSU_3353 "RNA pseudouridine synthase family
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275914
RefSeq:NP_954393.1 ProteinModelPortal:Q747B4 GeneID:2686435
KEGG:gsu:GSU3353 PATRIC:22029561 OMA:WALLHRL ProtClustDB:CLSK829240
BioCyc:GSUL243231:GH27-3287-MONOMER Uniprot:Q747B4
Length = 296
Score = 135 (52.6 bits), Expect = 9.2e-14, Sum P(2) = 9.2e-14
Identities = 24/76 (31%), Positives = 47/76 (61%)
Query: 209 SIRPG-IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIE 267
S P ++HRLD+GTSG+++ + AH+S + K +E+VY +L +G+P S +++
Sbjct: 123 SAEPARVIHRLDRGTSGVMIFPASRRAAAHISRELKEGRVEKVYWALVAGMPLADSWQVD 182
Query: 268 VPISRDPNNRIRMAAI 283
P+++ +R +A +
Sbjct: 183 APVAKVGTSRYGVAPV 198
Score = 103 (41.3 bits), Expect = 9.2e-14, Sum P(2) = 9.2e-14
Identities = 30/109 (27%), Positives = 52/109 (47%)
Query: 67 KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ 126
+AG +RLD + +S+ R+++ I G ++ G +V S ++ GD + + E +
Sbjct: 11 QAG-VRLDEGAARLFPQLSKTRIRTIIDWGGCAVGGTMVRVASRRLQAGDEIVLGVMEPE 69
Query: 127 PLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 175
R E P DI++ED L VNK + + P GT+ + H
Sbjct: 70 RYR-EITLAPEDILFEDGGYLAVNKASGLNCQRTPYQLKGTVEYAVTLH 117
>UNIPROTKB|Q9KQH0 [details] [associations]
symbol:rluC "Ribosomal large subunit pseudouridine synthase
C" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06179 OMA:HAANIKF PIR:G82126
RefSeq:NP_231662.1 ProteinModelPortal:Q9KQH0 SMR:Q9KQH0
DNASU:2613407 GeneID:2613407 KEGG:vch:VC2028 PATRIC:20083088
ProtClustDB:CLSK874642 Uniprot:Q9KQH0
Length = 315
Score = 111 (44.1 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 33/121 (27%), Positives = 63/121 (52%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
VQ + + AG+ R+D ++ +++ I ++ V +R G V +N + V K + ++ GD+
Sbjct: 8 VQFIDIDEDMAGQ-RIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRV-KAEYKLEAGDV 65
Query: 118 VNCT-----ISELQPLR-----AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 167
V + E +P ++ ++ IVYEDD++L++NKP+ VH G G
Sbjct: 66 VRVPPVTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGA 125
Query: 168 L 168
+
Sbjct: 126 I 126
Score = 109 (43.4 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 22/65 (33%), Positives = 37/65 (56%)
Query: 214 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRD 273
+VHR+D+ TSG+L+VAK + HL QF+ T+++ Y +L G + P+ ++
Sbjct: 141 LVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHWDAECKVVNAPLLKN 200
Query: 274 PNNRI 278
N I
Sbjct: 201 EVNSI 205
>TIGR_CMR|VC_2028 [details] [associations]
symbol:VC_2028 "ribosomal large subunit pseudouridine
synthase C" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06179 OMA:HAANIKF PIR:G82126
RefSeq:NP_231662.1 ProteinModelPortal:Q9KQH0 SMR:Q9KQH0
DNASU:2613407 GeneID:2613407 KEGG:vch:VC2028 PATRIC:20083088
ProtClustDB:CLSK874642 Uniprot:Q9KQH0
Length = 315
Score = 111 (44.1 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 33/121 (27%), Positives = 63/121 (52%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
VQ + + AG+ R+D ++ +++ I ++ V +R G V +N + V K + ++ GD+
Sbjct: 8 VQFIDIDEDMAGQ-RIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRV-KAEYKLEAGDV 65
Query: 118 VNCT-----ISELQPLR-----AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 167
V + E +P ++ ++ IVYEDD++L++NKP+ VH G G
Sbjct: 66 VRVPPVTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGA 125
Query: 168 L 168
+
Sbjct: 126 I 126
Score = 109 (43.4 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 22/65 (33%), Positives = 37/65 (56%)
Query: 214 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRD 273
+VHR+D+ TSG+L+VAK + HL QF+ T+++ Y +L G + P+ ++
Sbjct: 141 LVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHWDAECKVVNAPLLKN 200
Query: 274 PNNRI 278
N I
Sbjct: 201 EVNSI 205
>DICTYBASE|DDB_G0280463 [details] [associations]
symbol:DDB_G0280463 "Ribosomal large subunit
pseudouridine synthase D" species:44689 "Dictyostelium discoideum"
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 SMART:SM00363
dictyBase:DDB_G0280463 GO:GO:0003723 EMBL:AAFI02000036
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.10.290.10
eggNOG:COG0564 RefSeq:XP_641190.1 ProteinModelPortal:Q54VB9
EnsemblProtists:DDB0205216 GeneID:8622571 KEGG:ddi:DDB_G0280463
InParanoid:Q54VB9 OMA:VHMASEN Uniprot:Q54VB9
Length = 746
Score = 156 (60.0 bits), Expect = 5.9e-11, Sum P(3) = 5.9e-11
Identities = 40/113 (35%), Positives = 56/113 (49%)
Query: 134 DIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQXXXXXXX 193
DI LDIVYED ++ ++NKPA M+VHP G+ I TL ++
Sbjct: 190 DIKLDIVYEDKDLAIINKPAGMLVHPT-ALTLGSNALVINKEDQTHTLVNA--------L 240
Query: 194 XXXXXXXXXXXXXGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHT 246
G RPGIVHRLDK T+G++++A++ H L F+ HT
Sbjct: 241 IHRYGGVENLSSVGGVERPGIVHRLDKDTAGMIIIARNNDVHQKLQTLFEKHT 293
Score = 52 (23.4 bits), Expect = 5.9e-11, Sum P(3) = 5.9e-11
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 246 TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRM 280
TI + Y + G P + G I ISR P ++ +M
Sbjct: 328 TISKKYHCIVLGKPKEQHGFINKKISRHPADKNKM 362
Score = 47 (21.6 bits), Expect = 5.9e-11, Sum P(3) = 5.9e-11
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 84 ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAE 133
++R+ + + VSING + S VK D++ ++ + + + +
Sbjct: 37 LTRSAIPKILALKSVSINGLPLKDKSTKVKPNDIITIQLANIDSFKVDQQ 86
>TIGR_CMR|ECH_0774 [details] [associations]
symbol:ECH_0774 "ribosomal large subunit pseudouridine
synthase C" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_507572.1
ProteinModelPortal:Q2GG61 STRING:Q2GG61 GeneID:3927994
KEGG:ech:ECH_0774 PATRIC:20576978 OMA:HAYFLSI
ProtClustDB:CLSK749111 BioCyc:ECHA205920:GJNR-777-MONOMER
Uniprot:Q2GG61
Length = 307
Score = 121 (47.7 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 25/67 (37%), Positives = 42/67 (62%)
Query: 207 GASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRI 266
G S++ IVHRLDK TSG+L++A++ + +FK +E+ Y++LT G+P G+I
Sbjct: 131 GESMK--IVHRLDKDTSGILMLARNARISRLIMHEFKNRRVEKKYLALTQGIPKNDIGQI 188
Query: 267 EVPISRD 273
I ++
Sbjct: 189 NHSIIKN 195
Score = 90 (36.7 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 34/101 (33%), Positives = 57/101 (56%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSI-NGQVVSKVSHNVKGGDMVNCT-----ISE 124
+R+D +I RI I ++ V+ +R G+V + N +V S V +K G+++ C I E
Sbjct: 15 IRIDKFIR-RILKIPQSLVEKFLRKGVVLLDNTKVKSDV--RIKAGNVI-CVRYDRVIYE 70
Query: 125 LQPLR--AEAED------IPLDIVYEDDNVLVVNKPAHMVV 157
+ +R +A+ I +VYEDD+VL++NKPA + V
Sbjct: 71 RKQIRKICKADSDFLVHLIRNSVVYEDDDVLIINKPAGISV 111
>TIGR_CMR|SPO_0516 [details] [associations]
symbol:SPO_0516 "ribosomal large subunit pseudouridine
synthase C" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003723
GO:GO:0016829 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.10.290.10 TIGRFAMs:TIGR00005 OMA:GEKMLCI
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_165778.1
ProteinModelPortal:Q5LW27 GeneID:3196070 KEGG:sil:SPO0516
PATRIC:23374295 ProtClustDB:CLSK933288 Uniprot:Q5LW27
Length = 347
Score = 118 (46.6 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 207 GASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRI 266
G P +VHRLDK TSG+LV+A+ + A L+ F+ ++Y +L +GVP+ G I
Sbjct: 131 GNDENPRLVHRLDKDTSGVLVLARTREAAARLTAAFRHRNTRKIYWALVAGVPTPYLGEI 190
Query: 267 E 267
+
Sbjct: 191 K 191
Score = 94 (38.1 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 29/117 (24%), Positives = 54/117 (46%)
Query: 56 AGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGG 115
+GVQ+ TV G RLD W + + R++ R G + ++G +K + ++ G
Sbjct: 2 SGVQMI-TVGEGDGDQRLDRWFRRMFPHVGQGRIEKMCRKGELRVDG-ARAKPATRLEVG 59
Query: 116 DMVNCTI-----SELQPLRAEAED-----IPLDIVYEDDNVLVVNKPAHMVVHPAPG 162
V +P+++ D I +++ DD+++V+NKPA + V G
Sbjct: 60 QQVRIPPLPAPGERPEPVKSRVSDSDAKLIRACVLHRDDDIIVLNKPAGLAVQGGSG 116
>UNIPROTKB|Q4KFS5 [details] [associations]
symbol:rluC "Pseudouridine synthase" species:220664
"Pseudomonas protegens Pf-5" [GO:0006364 "rRNA processing"
evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
GO:GO:0006364 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005
HOGENOM:HOG000275914 KO:K06179 OMA:HAANIKF RefSeq:YP_258908.1
ProteinModelPortal:Q4KFS5 SMR:Q4KFS5 STRING:Q4KFS5 GeneID:3477558
KEGG:pfl:PFL_1788 PATRIC:19872807 ProtClustDB:CLSK867667
BioCyc:PFLU220664:GIX8-1796-MONOMER Uniprot:Q4KFS5
Length = 318
Score = 121 (47.7 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 36/120 (30%), Positives = 63/120 (52%)
Query: 57 GVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSIN-GQVVSKVSHNVKGG 115
GVQL E AG+ R+D ++ +R+ G+ + + +R G V +N G++ K + ++ G
Sbjct: 10 GVQLLEVSPEYAGQ-RIDNFLLARLKGVPKTLIYRILRKGEVRVNKGRI--KPEYKLQAG 66
Query: 116 DMVNCT---ISELQ---PL-RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 168
D+V + E PL + + + IV+ED ++V+NKPA + VH G G +
Sbjct: 67 DVVRVPPVRVPERDEPVPLAQGLLQRLEASIVFEDKALIVINKPAGIAVHGGSGLNFGVI 126
Score = 88 (36.0 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 214 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPI 270
+VHRLD+ TSGLL++AK HL + +++ Y++L G + + ++ P+
Sbjct: 141 LVHRLDRDTSGLLMIAKKRSMLRHLHAALRGDGVDKRYMALVRGHWATAVKQVRAPL 197
>TIGR_CMR|CPS_0536 [details] [associations]
symbol:CPS_0536 "RNA pseudouridine synthase family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564 KO:K06177
RefSeq:YP_267294.1 ProteinModelPortal:Q489H0 STRING:Q489H0
GeneID:3520534 KEGG:cps:CPS_0536 PATRIC:21464415
HOGENOM:HOG000222064 OMA:MAEFWWG ProtClustDB:CLSK896118
BioCyc:CPSY167879:GI48-631-MONOMER Uniprot:Q489H0
Length = 567
Score = 132 (51.5 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 214 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRD 273
IVHRLD TSGLL++A +E +H HL +QF I + Y++ G ++SG I +P+ D
Sbjct: 410 IVHRLDMATSGLLMLALNERAHKHLQQQFMNKEINKRYVATIEGKLEKTSGEICLPLRGD 469
Query: 274 PNNRIRMAAIPGSNKHGQ 291
++R + ++HG+
Sbjct: 470 FDDRPKQMVC---HEHGK 484
Score = 78 (32.5 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 115 GDMVNCTISELQPLRAE-AEDIPLDIVYEDDNVLVVNKPAHMVVHP 159
G M+ + PL AE I L+IV++D++V+VVNKPA ++ P
Sbjct: 341 GHMLEGMEVDKNPLLINPAEGIDLEIVFQDEHVVVVNKPAGLLSVP 386
>UNIPROTKB|P0AA39 [details] [associations]
symbol:rluC species:83333 "Escherichia coli K-12"
[GO:0000455 "enzyme-directed rRNA pseudouridine synthesis"
evidence=IMP;IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;IDA]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 GO:GO:0000455 EMBL:M62747
EMBL:M96791 PIR:C64852 RefSeq:NP_415604.1 RefSeq:YP_489354.1
PDB:1V9K PDB:1XPI PDBsum:1V9K PDBsum:1XPI ProteinModelPortal:P0AA39
SMR:P0AA39 DIP:DIP-47832N IntAct:P0AA39 PRIDE:P0AA39
EnsemblBacteria:EBESCT00000000214 EnsemblBacteria:EBESCT00000014626
GeneID:12932031 GeneID:945637 KEGG:ecj:Y75_p1056 KEGG:eco:b1086
PATRIC:32117413 EchoBASE:EB1108 EcoGene:EG11118
HOGENOM:HOG000275914 KO:K06179 OMA:HAANIKF ProtClustDB:PRK11025
BioCyc:EcoCyc:EG11118-MONOMER BioCyc:ECOL316407:JW1072-MONOMER
BioCyc:MetaCyc:EG11118-MONOMER EvolutionaryTrace:P0AA39
Genevestigator:P0AA39 Uniprot:P0AA39
Length = 319
Score = 113 (44.8 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 33/118 (27%), Positives = 62/118 (52%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
T D +AG+ R+D ++ +++ G+ ++ + +R G V +N + + K + ++ GD V
Sbjct: 14 TAD-EAGQ-RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPP 70
Query: 123 SELQPLRAEAEDIPLD--------IVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI 172
+ EA L I+YEDD++LV+NKP+ VH G + G ++ G+
Sbjct: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGL 127
Score = 91 (37.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 214 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRD 273
+VHRLD+ TSG+L+VAK + L EQ + +++ Y++L G ++ P+ ++
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKN 198
>TIGR_CMR|CHY_1119 [details] [associations]
symbol:CHY_1119 "ribosomal large subunit pseudouridine
synthase, RluA family" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0001522 "pseudouridine synthesis"
evidence=ISS] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0009982 "pseudouridine synthase activity" evidence=ISS]
InterPro:IPR006145 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
eggNOG:COG0564 TIGRFAMs:TIGR00005 RefSeq:YP_359965.1
ProteinModelPortal:Q3AD19 STRING:Q3AD19 GeneID:3727661
KEGG:chy:CHY_1119 PATRIC:21275376 OMA:ITHILAC
BioCyc:CHYD246194:GJCN-1118-MONOMER Uniprot:Q3AD19
Length = 301
Score = 102 (41.0 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 21/77 (27%), Positives = 43/77 (55%)
Query: 83 GISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYE 142
G+S+ +++ V N + V SH G++V + P ++++ P+ ++YE
Sbjct: 24 GLSKRQLRKLKLQNAVFFNNRPVPLNSHLTTPGEVV-IKLPHTLPPAVQSQNAPVKVLYE 82
Query: 143 DDNVLVVNKPAHMVVHP 159
DD ++V++KPA ++ HP
Sbjct: 83 DDYLIVIDKPAGVLAHP 99
Score = 101 (40.6 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 215 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDP 274
++RLD+ TSG +++AK L+ + I ++Y++L G + SG I +P+
Sbjct: 129 IYRLDRNTSGPMLIAKFSLIAEMLNNSLRKRQINKIYLALIEGPLADKSGIINLPLGLLE 188
Query: 275 NNRIRMAAIPG 285
+ I+ A +PG
Sbjct: 189 GSIIKRAVVPG 199
>TIGR_CMR|CBU_0487 [details] [associations]
symbol:CBU_0487 "ribosomal large subunit pseudouridine
synthase C" species:227377 "Coxiella burnetii RSA 493" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016829 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 TIGRFAMs:TIGR00005
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_338279.1
ProteinModelPortal:Q4AAY1 GeneID:1208371 KEGG:cbu:CBU_0487
PATRIC:17929665 OMA:ERWPDYA ProtClustDB:CLSK940424
BioCyc:CBUR227377:GJ7S-484-MONOMER Uniprot:Q4AAY1
Length = 308
Score = 115 (45.5 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 34/111 (30%), Positives = 58/111 (52%)
Query: 65 DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT-IS 123
D AG+ RLD ++ +R+ G+ R+ +IR G V +N + V + + GD+V +
Sbjct: 10 DAHAGQ-RLDNFLITRLKGVPSTRIYRAIRKGEVRVNKRRVG-ADYRLVVGDLVRIPPVQ 67
Query: 124 ELQPLRAEAED----IPLD--IVYEDDNVLVVNKPAHMVVHPAPGNATGTL 168
P + D I L+ I+YE+ ++LV++KPA + VH G G +
Sbjct: 68 MAAPKKPATVDEKLLISLEMRILYEEADLLVIDKPAGLPVHGGSGIQGGVI 118
Score = 86 (35.3 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 214 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRD 273
+VHRLD+ TSG L+VAK + L + + Y+ L G R+EVP+ ++
Sbjct: 133 LVHRLDRETSGCLMVAKKRSTLVALHTLLTQRKVIKQYLLLVKGQWQGGECRVEVPLKKN 192
>UNIPROTKB|Q9KN61 [details] [associations]
symbol:VC_A0104 "Pseudouridine synthase" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 KO:K06177 PIR:C82498
RefSeq:NP_232505.1 HSSP:Q8X9F0 ProteinModelPortal:Q9KN61
DNASU:2612237 GeneID:2612237 KEGG:vch:VCA0104 PATRIC:20084787
OMA:FENNITQ ProtClustDB:CLSK788635 Uniprot:Q9KN61
Length = 221
Score = 119 (46.9 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 215 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDP 274
+HRLD TSGLLV A ++ L +QF +++ Y++L G S++ G I++P+ D
Sbjct: 65 LHRLDMSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDL 124
Query: 275 NNRIR 279
++R R
Sbjct: 125 DDRPR 129
Score = 70 (29.7 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHP 159
A+ +DI IVY+DD ++VVNKPA + P
Sbjct: 13 AQGQDIT--IVYQDDAIVVVNKPAEFLSVP 40
>TIGR_CMR|VC_A0104 [details] [associations]
symbol:VC_A0104 "ribosomal large subunit pseudouridine
synthase A" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154 KO:K06177 PIR:C82498
RefSeq:NP_232505.1 HSSP:Q8X9F0 ProteinModelPortal:Q9KN61
DNASU:2612237 GeneID:2612237 KEGG:vch:VCA0104 PATRIC:20084787
OMA:FENNITQ ProtClustDB:CLSK788635 Uniprot:Q9KN61
Length = 221
Score = 119 (46.9 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 215 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDP 274
+HRLD TSGLLV A ++ L +QF +++ Y++L G S++ G I++P+ D
Sbjct: 65 LHRLDMSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDL 124
Query: 275 NNRIR 279
++R R
Sbjct: 125 DDRPR 129
Score = 70 (29.7 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHP 159
A+ +DI IVY+DD ++VVNKPA + P
Sbjct: 13 AQGQDIT--IVYQDDAIVVVNKPAEFLSVP 40
>UNIPROTKB|Q9KP71 [details] [associations]
symbol:rluA "Ribosomal large subunit pseudouridine synthase
A" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154
eggNOG:COG0564 KO:K06177 OMA:CQIVHRL PIR:G82068 RefSeq:NP_232134.1
ProteinModelPortal:Q9KP71 SMR:Q9KP71 DNASU:2615169 GeneID:2615169
KEGG:vch:VC2505 PATRIC:20084039 ProtClustDB:CLSK874821
Uniprot:Q9KP71
Length = 245
Score = 126 (49.4 bits), Expect = 7.6e-09, Sum P(2) = 7.6e-09
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 214 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRD 273
+VHRLD TSGL++ AK +H + L +QF+ ++Y + GV Q+ G + +P+ D
Sbjct: 59 VVHRLDMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCD 118
Query: 274 PNNR 277
NR
Sbjct: 119 WPNR 122
Score = 62 (26.9 bits), Expect = 7.6e-09, Sum P(2) = 7.6e-09
Identities = 8/23 (34%), Positives = 18/23 (78%)
Query: 137 LDIVYEDDNVLVVNKPAHMVVHP 159
+D++YED++++ NKP+ ++ P
Sbjct: 14 IDVIYEDEHIIAANKPSGLLSVP 36
>TIGR_CMR|VC_2505 [details] [associations]
symbol:VC_2505 "ribosomal large subunit pseudouridine
synthase A" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154
eggNOG:COG0564 KO:K06177 OMA:CQIVHRL PIR:G82068 RefSeq:NP_232134.1
ProteinModelPortal:Q9KP71 SMR:Q9KP71 DNASU:2615169 GeneID:2615169
KEGG:vch:VC2505 PATRIC:20084039 ProtClustDB:CLSK874821
Uniprot:Q9KP71
Length = 245
Score = 126 (49.4 bits), Expect = 7.6e-09, Sum P(2) = 7.6e-09
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 214 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRD 273
+VHRLD TSGL++ AK +H + L +QF+ ++Y + GV Q+ G + +P+ D
Sbjct: 59 VVHRLDMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCD 118
Query: 274 PNNR 277
NR
Sbjct: 119 WPNR 122
Score = 62 (26.9 bits), Expect = 7.6e-09, Sum P(2) = 7.6e-09
Identities = 8/23 (34%), Positives = 18/23 (78%)
Query: 137 LDIVYEDDNVLVVNKPAHMVVHP 159
+D++YED++++ NKP+ ++ P
Sbjct: 14 IDVIYEDEHIIAANKPSGLLSVP 36
>TIGR_CMR|CPS_2290 [details] [associations]
symbol:CPS_2290 "ribosomal large subunit pseudouridine
synthase C" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 HOGENOM:HOG000275914 KO:K06179 OMA:HAANIKF
RefSeq:YP_269010.1 ProteinModelPortal:Q482K7 SMR:Q482K7
STRING:Q482K7 GeneID:3520678 KEGG:cps:CPS_2290 PATRIC:21467679
BioCyc:CPSY167879:GI48-2355-MONOMER Uniprot:Q482K7
Length = 360
Score = 102 (41.0 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 214 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSG 257
+VHRLD+ TSG L+VAK + HL EQF+ +++ Y +L G
Sbjct: 182 LVHRLDRDTSGCLMVAKKRSTLRHLHEQFRDKNVQKFYHALVKG 225
Score = 96 (38.9 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 26/113 (23%), Positives = 57/113 (50%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT- 121
T+D++ R+D ++ + G+ ++ + +R G + +N + + V + + D V
Sbjct: 56 TIDSEDAGQRIDNFLLRTLKGVPKSHLYRLMRKGEIRVNKKRIKPV-YKLLIDDEVRIAP 114
Query: 122 --ISELQPLRAEA----EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 168
+SE + + ++ I++EDD ++V+NKP+ M VH G + G +
Sbjct: 115 IRVSEEKDAVSTGLHIVANLEKQILFEDDRLIVINKPSGMAVHGGSGLSFGLI 167
>ZFIN|ZDB-GENE-040801-238 [details] [associations]
symbol:zgc:92006 "zgc:92006" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
ZFIN:ZDB-GENE-040801-238 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564
GeneTree:ENSGT00530000063800 HOVERGEN:HBG054698 EMBL:BC078405
IPI:IPI00495929 RefSeq:NP_001003495.1 UniGene:Dr.79840
ProteinModelPortal:Q6DBR0 STRING:Q6DBR0 Ensembl:ENSDART00000020283
GeneID:445101 KEGG:dre:445101 HOGENOM:HOG000136349
InParanoid:Q6DBR0 OMA:SKARYIP OrthoDB:EOG4FFD2H NextBio:20831865
ArrayExpress:Q6DBR0 Bgee:Q6DBR0 Uniprot:Q6DBR0
Length = 358
Score = 132 (51.5 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 30/84 (35%), Positives = 49/84 (58%)
Query: 209 SIRPG----IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSG 264
++RPG + H+L+K T+G+L++AK E + H+ + H +E Y+++T GVP S G
Sbjct: 132 NMRPGSQLHLCHKLEKETTGVLILAKTEEAAEHVQTLIQSHKVEMKYLAITVGVPVPSEG 191
Query: 265 RIEVP-ISR---DPNNRIRMAAIP 284
I++P I R P +MA P
Sbjct: 192 VIDIPVIERAVVGPQPHFKMALSP 215
Score = 60 (26.2 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 140 VYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
+YED N++ +NKP + +H N G + + C LP LA
Sbjct: 92 LYEDQNIIAINKPYDVPLH----NING--IRNSIAEC-LPLLA 127
Score = 38 (18.4 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 15/63 (23%), Positives = 24/63 (38%)
Query: 98 VSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 157
VS V SK K D+ N E + + + ++P+ + N L V
Sbjct: 19 VSDTQTVASKHKTAPKAADIANRLRKEKEKEKDDKNEVPVSPLQSRVNELKQFSQQLQSV 78
Query: 158 HPA 160
HP+
Sbjct: 79 HPS 81
>TIGR_CMR|SPO_3392 [details] [associations]
symbol:SPO_3392 "ribosomal large subunit pseudouridine
synthase A" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
TIGRFAMs:TIGR00005 KO:K06177 OMA:CQIVHRL RefSeq:YP_168588.1
ProteinModelPortal:Q5LN20 SMR:Q5LN20 GeneID:3194821
KEGG:sil:SPO3392 PATRIC:23380239 ProtClustDB:CLSK934145
Uniprot:Q5LN20
Length = 215
Score = 111 (44.1 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 212 PG--IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVP 269
PG +VHRLD+ TSG++V A+ H+ +L QF+ + Y++ G +G +++P
Sbjct: 53 PGALLVHRLDRDTSGVMVFAQTPHAQRNLGRQFEERKTRKTYVARLWGRLEPKTGTVDLP 112
Query: 270 ISRDPNNRIR 279
+ D NR R
Sbjct: 113 LIVDWPNRPR 122
Score = 69 (29.3 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 136 PLDIVYEDDNVLVVNKPAHMVVHPAPG 162
PLD+++ED ++V+NKPA ++ P G
Sbjct: 11 PLDVLHEDAELIVLNKPAGLLSVPGRG 37
>TIGR_CMR|GSU_0671 [details] [associations]
symbol:GSU_0671 "ribosomal large subunit pseudouridine
synthase C" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS50889
GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919 KO:K06179
RefSeq:NP_951728.1 ProteinModelPortal:Q74FD8 GeneID:2685543
KEGG:gsu:GSU0671 PATRIC:22024099 OMA:MKIEIGA ProtClustDB:CLSK827983
BioCyc:GSUL243231:GH27-690-MONOMER Uniprot:Q74FD8
Length = 296
Score = 101 (40.6 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 207 GASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSG-VPSQSSGR 265
G +++ V+RLD+GTSG ++AK S L K ++++Y+++T G +P +G
Sbjct: 121 GTAVKLRPVNRLDRGTSGATILAKSSSSAGMLGRYVKEEGLDKLYLAVTDGSLPD--AGT 178
Query: 266 IEVPIS-RDPNNRIRMAA 282
I+ P+ +D + R A
Sbjct: 179 IDTPLDGKDAHTDFRTLA 196
Score = 87 (35.7 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 24/85 (28%), Positives = 43/85 (50%)
Query: 74 DAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAE 133
++++ + + A ++ I +G + ING V+ + G + L A A+
Sbjct: 16 ESFLRNLLPAAPSAYIRKLISAGHLKINGGAVAPDTLLAAGNTATIKESDRTRQLLAAAK 75
Query: 134 DIPLDIVYEDDNVLVVNKPAHMVVH 158
LDI++EDD ++VNKPA + VH
Sbjct: 76 P-QLDILWEDDYCVIVNKPAGLPVH 99
>SGD|S000002194 [details] [associations]
symbol:PUS9 "Mitochondrial tRNA:pseudouridine synthase"
species:4932 "Saccharomyces cerevisiae" [GO:0009451 "RNA
modification" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA;ISM;IMP] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IMP;IDA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IMP;IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
SGD:S000002194 GO:GO:0005739 GO:GO:0005634 EMBL:BK006938
GO:GO:0003723 EMBL:Z71781 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 eggNOG:COG0564 TIGRFAMs:TIGR00005
HOGENOM:HOG000167783 EMBL:Z74084 EMBL:AY692682 PIR:S67569
RefSeq:NP_010248.1 ProteinModelPortal:Q12069 SMR:Q12069
DIP:DIP-5399N MINT:MINT-553402 STRING:Q12069 PaxDb:Q12069
EnsemblFungi:YDL036C GeneID:851525 KEGG:sce:YDL036C CYGD:YDL036c
GeneTree:ENSGT00420000029802 KO:K15454 OMA:GHPISND
OrthoDB:EOG4BK8C8 NextBio:968911 Genevestigator:Q12069
GermOnline:YDL036C Uniprot:Q12069
Length = 462
Score = 107 (42.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 26/90 (28%), Positives = 49/90 (54%)
Query: 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR 129
K +D +IS D S + +I +G V IN + +S ++ GD++ + +P
Sbjct: 126 KKLVDVFISEFRDRESEY-YKRTIENGDVHINDETAD-LSTVIRNGDLITHQVHRHEP-- 181
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHP 159
P+ +++EDDN++V++KP+ + VHP
Sbjct: 182 -PVTSRPIKVIFEDDNIMVIDKPSGIPVHP 210
Score = 83 (34.3 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 22/84 (26%), Positives = 46/84 (54%)
Query: 216 HRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISR-DP 274
+RLD+ TSGL+ +AK ++ +Q K + + Y++ G ++ +E P+ +P
Sbjct: 235 NRLDRLTSGLMFLAKTPKGADNIGDQLKAREVTKEYVAKVVGEFPETEVIVEKPLKLIEP 294
Query: 275 NNRIRMAAIPGSNKHGQARHAASI 298
R+ + A+ ++ G A+HA ++
Sbjct: 295 --RLALNAVCQMDEKG-AKHAKTV 315
>TIGR_CMR|CPS_4520 [details] [associations]
symbol:CPS_4520 "ribosomal large subunit pseudouridine
synthase A" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919 eggNOG:COG0564
KO:K06177 RefSeq:YP_271168.1 ProteinModelPortal:Q47VK4 SMR:Q47VK4
STRING:Q47VK4 GeneID:3518755 KEGG:cps:CPS_4520 PATRIC:21471863
OMA:FYATEEA ProtClustDB:CLSK757241
BioCyc:CPSY167879:GI48-4529-MONOMER Uniprot:Q47VK4
Length = 227
Score = 115 (45.5 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 21/64 (32%), Positives = 40/64 (62%)
Query: 214 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRD 273
IVHRLD TSG++++A ++ +H +S QF+ ++ Y++ G+ + G +++P+ D
Sbjct: 62 IVHRLDMATSGIMIMALNKPAHVAISRQFEQRKTQKSYLARVWGLVELNEGSVDLPLISD 121
Query: 274 PNNR 277
NR
Sbjct: 122 WPNR 125
Score = 61 (26.5 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 10/23 (43%), Positives = 19/23 (82%)
Query: 137 LDIVYEDDNVLVVNKPAHMVVHP 159
LDI+Y+DD+++V+NK + ++ P
Sbjct: 17 LDIIYQDDDIVVLNKASGILSVP 39
>UNIPROTKB|P0AA37 [details] [associations]
symbol:rluA species:83333 "Escherichia coli K-12"
[GO:0031118 "rRNA pseudouridine synthesis" evidence=IMP]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IMP]
[GO:0009451 "RNA modification" evidence=IMP] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IDA;IMP] [GO:0001522
"pseudouridine synthesis" evidence=IMP] [GO:0008033 "tRNA
processing" evidence=IMP] [GO:0006364 "rRNA processing"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000455
"enzyme-directed rRNA pseudouridine synthesis" evidence=IMP]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 HOGENOM:HOG000275919
GO:GO:0031119 eggNOG:COG0564 TIGRFAMs:TIGR00005 GO:GO:0000455
PIR:B64727 RefSeq:NP_414600.1 RefSeq:YP_488364.1 PDB:2I82
PDBsum:2I82 ProteinModelPortal:P0AA37 SMR:P0AA37 DIP:DIP-47988N
PRIDE:P0AA37 EnsemblBacteria:EBESCT00000004777
EnsemblBacteria:EBESCT00000017147 GeneID:12933046 GeneID:946262
KEGG:ecj:Y75_p0058 KEGG:eco:b0058 PATRIC:32115215 EchoBASE:EB2493
EcoGene:EG12609 KO:K06177 OMA:CQIVHRL ProtClustDB:PRK10158
BioCyc:EcoCyc:EG12609-MONOMER BioCyc:ECOL316407:JW0057-MONOMER
BioCyc:MetaCyc:EG12609-MONOMER EvolutionaryTrace:P0AA37
Genevestigator:P0AA37 Uniprot:P0AA37
Length = 219
Score = 111 (44.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 215 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDP 274
VHRLD TSG++VVA + + L QF+ ++ Y++ G PS + G +++P+ D
Sbjct: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119
Query: 275 NNRIRMAAIPGSNKHGQARH 294
NR + + K Q +
Sbjct: 120 PNRPKQKVCYETGKPAQTEY 139
Score = 63 (27.2 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 11/23 (47%), Positives = 19/23 (82%)
Query: 137 LDIVYEDDNVLVVNKPAHMVVHP 159
L I+Y+DD+++VVNKP+ ++ P
Sbjct: 14 LVILYQDDHIMVVNKPSGLLSVP 36
>SGD|S000005427 [details] [associations]
symbol:RIB2 "Bifunctional DRAP deaminase and
tRNA:pseudouridine synthase" species:4932 "Saccharomyces
cerevisiae" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA;ISS;IMP;IDA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IDA;IMP] [GO:0043723
"2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate
deaminase activity" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0009231 "riboflavin biosynthetic process"
evidence=IEA;IMP] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;ISM;IDA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR002125 InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR016193
InterPro:IPR020103 Pfam:PF00383 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 UniPathway:UPA00275 SGD:S000005427
GO:GO:0005737 EMBL:BK006948 GO:GO:0046872 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0003723 GO:GO:0009231 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 TIGRFAMs:TIGR00005
HOGENOM:HOG000167783 GeneTree:ENSGT00420000029802 OrthoDB:EOG4BK8C8
eggNOG:COG0117 KO:K14655 GO:GO:0008835 EMBL:Z21618 EMBL:Z74808
PIR:S50972 RefSeq:NP_014575.1 ProteinModelPortal:Q12362 SMR:Q12362
DIP:DIP-3840N MINT:MINT-495231 STRING:Q12362 PaxDb:Q12362
PeptideAtlas:Q12362 PRIDE:Q12362 EnsemblFungi:YOL066C GeneID:854088
KEGG:sce:YOL066C CYGD:YOL066c OMA:EQCALEK
BioCyc:MetaCyc:YOL066C-MONOMER NextBio:975737 Genevestigator:Q12362
GermOnline:YOL066C GO:GO:0043723 Uniprot:Q12362
Length = 591
Score = 97 (39.2 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 20/68 (29%), Positives = 40/68 (58%)
Query: 92 SIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNK 151
+I G V +N + + + ++ GD++ + +P P+DIV+ED+++LV++K
Sbjct: 120 TIAEGKVYLNDEPAN-LDTIIRDGDLITHKVHRHEP---PVTSKPIDIVFEDEDILVIDK 175
Query: 152 PAHMVVHP 159
P+ + VHP
Sbjct: 176 PSSIPVHP 183
Score = 88 (36.0 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 24/92 (26%), Positives = 45/92 (48%)
Query: 207 GASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRI 266
G S+ P +RLDK TSGL+ +AK + +Q K + + Y++ G +
Sbjct: 201 GYSVHP--CNRLDKPTSGLMFLAKTPLGADRMGDQMKAREVTKEYVARVKGEFPIGIVEV 258
Query: 267 EVPISRDPNNRIRMAAIPGSNKHGQARHAASI 298
+ P+ R N ++ + A+ + A+HA ++
Sbjct: 259 DKPV-RSVNPKVALNAVCEMSDEN-AKHAKTV 288
>UNIPROTKB|E1BYI6 [details] [associations]
symbol:RPUSD4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0005739
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GeneTree:ENSGT00530000063800 CTD:84881 OMA:SKARYIP
EMBL:AADN02042045 EMBL:AADN02042046 IPI:IPI00819761
RefSeq:XP_001231937.2 Ensembl:ENSGALT00000041115 GeneID:768808
KEGG:gga:768808 Uniprot:E1BYI6
Length = 354
Score = 109 (43.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 18/57 (31%), Positives = 38/57 (66%)
Query: 214 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPI 270
+ HRLDK T+G++V+A+++ + + FK +E++Y +++ G P + G +E+P+
Sbjct: 137 LCHRLDKETTGVMVLARNKEAADRIRLLFKTRQVEKIYWAISVGSPDPAEGIVEIPM 193
Score = 68 (29.0 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 140 VYEDDNVLVVNKPAHMVVHPAPG 162
VY+D+ V+V+NKP + VH PG
Sbjct: 89 VYQDEEVVVLNKPYGLPVHGGPG 111
>MGI|MGI:1919239 [details] [associations]
symbol:Rpusd4 "RNA pseudouridylate synthase domain
containing 4" species:10090 "Mus musculus" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009451
"RNA modification" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
MGI:MGI:1919239 GO:GO:0005739 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564
GeneTree:ENSGT00530000063800 CTD:84881 HOVERGEN:HBG054698
HOGENOM:HOG000136349 OMA:SKARYIP OrthoDB:EOG4FFD2H EMBL:AK010322
EMBL:AK156574 EMBL:BC061256 IPI:IPI00109744 RefSeq:NP_082316.1
UniGene:Mm.273515 UniGene:Mm.474966 ProteinModelPortal:Q9CWX4
SMR:Q9CWX4 STRING:Q9CWX4 PhosphoSite:Q9CWX4 PRIDE:Q9CWX4
Ensembl:ENSMUST00000034543 GeneID:71989 KEGG:mmu:71989
UCSC:uc009otc.1 InParanoid:Q9CWX4 NextBio:335146 Bgee:Q9CWX4
CleanEx:MM_RPUSD4 Genevestigator:Q9CWX4 Uniprot:Q9CWX4
Length = 377
Score = 106 (42.4 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 20/57 (35%), Positives = 37/57 (64%)
Query: 214 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPI 270
+ HRLDK T+G++V+A ++ + E F+ +E+ Y ++T VP S+G +++PI
Sbjct: 148 LCHRLDKETTGVMVLAWEKDMAHQVQELFRTRQVEKKYWAITVRVPLPSAGVVDIPI 204
Score = 67 (28.6 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 11/31 (35%), Positives = 23/31 (74%)
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPG 162
A+++ I+++D++++V+NKP + VH PG
Sbjct: 92 AKELSRRILHQDNDLVVINKPYGLPVHGGPG 122
>UNIPROTKB|E9PML2 [details] [associations]
symbol:RPUSD4 "RNA pseudouridylate synthase
domain-containing protein 4" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 CTD:84881
UniGene:Hs.150458 GeneID:84881 KEGG:hsa:84881 HGNC:HGNC:25898
GenomeRNAi:84881 NextBio:75193 EMBL:AP001893 IPI:IPI00921381
RefSeq:NP_001138299.1 ProteinModelPortal:E9PML2 SMR:E9PML2
Ensembl:ENST00000533628 UCSC:uc009zbz.3 ArrayExpress:E9PML2
Bgee:E9PML2 Uniprot:E9PML2
Length = 346
Score = 104 (41.7 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 20/57 (35%), Positives = 36/57 (63%)
Query: 214 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPI 270
+ HRLDK T+G++V+A D+ + E F+ + + Y ++T VP S+G +++PI
Sbjct: 148 LCHRLDKETTGVMVLAWDKDMAHQVQELFRTRQVVKKYWAITVHVPMPSAGVVDIPI 204
Score = 67 (28.6 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPG 162
A+ + I+++D N++V+NKP + VH PG
Sbjct: 92 AKALTRGILHQDKNLVVINKPYGLPVHGGPG 122
>RGD|1311268 [details] [associations]
symbol:Rpusd4 "RNA pseudouridylate synthase domain containing 4"
species:10116 "Rattus norvegicus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 RGD:1311268 GO:GO:0005739
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
HSSP:P0AA39 eggNOG:COG0564 GeneTree:ENSGT00530000063800 CTD:84881
HOVERGEN:HBG054698 HOGENOM:HOG000136349 OMA:SKARYIP
OrthoDB:EOG4FFD2H EMBL:BC098023 IPI:IPI00362584
RefSeq:NP_001020455.1 UniGene:Rn.232042 ProteinModelPortal:Q4QQT0
PRIDE:Q4QQT0 Ensembl:ENSRNOT00000015670 GeneID:315550
KEGG:rno:315550 UCSC:RGD:1311268 InParanoid:Q4QQT0 NextBio:669410
Genevestigator:Q4QQT0 Uniprot:Q4QQT0
Length = 377
Score = 106 (42.4 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 20/57 (35%), Positives = 37/57 (64%)
Query: 214 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPI 270
+ HRLDK T+G++V+A ++ + E F+ +E+ Y ++T VP S+G +++PI
Sbjct: 148 LCHRLDKETTGVMVLAWEKDMAHQVQELFRTRQVEKKYWAITVRVPLPSAGVVDIPI 204
Score = 65 (27.9 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPG 162
A+++ I+++D +++V+NKP + VH PG
Sbjct: 92 AKELSRRILHQDKDLVVINKPYGLPVHGGPG 122
>UNIPROTKB|Q96CM3 [details] [associations]
symbol:RPUSD4 "RNA pseudouridylate synthase
domain-containing protein 4" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0005739 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564 CTD:84881
HOVERGEN:HBG054698 HOGENOM:HOG000136349 OMA:SKARYIP
OrthoDB:EOG4FFD2H EMBL:AK027400 EMBL:BC014131 IPI:IPI00304069
RefSeq:NP_116184.2 UniGene:Hs.150458 ProteinModelPortal:Q96CM3
SMR:Q96CM3 STRING:Q96CM3 PhosphoSite:Q96CM3 DMDM:74731354
PaxDb:Q96CM3 PRIDE:Q96CM3 Ensembl:ENST00000298317 GeneID:84881
KEGG:hsa:84881 UCSC:uc001qde.3 GeneCards:GC11M126071
HGNC:HGNC:25898 HPA:HPA039689 neXtProt:NX_Q96CM3
PharmGKB:PA134875000 InParanoid:Q96CM3 PhylomeDB:Q96CM3
GenomeRNAi:84881 NextBio:75193 ArrayExpress:Q96CM3 Bgee:Q96CM3
CleanEx:HS_RPUSD4 Genevestigator:Q96CM3 Uniprot:Q96CM3
Length = 377
Score = 104 (41.7 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 20/57 (35%), Positives = 36/57 (63%)
Query: 214 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPI 270
+ HRLDK T+G++V+A D+ + E F+ + + Y ++T VP S+G +++PI
Sbjct: 148 LCHRLDKETTGVMVLAWDKDMAHQVQELFRTRQVVKKYWAITVHVPMPSAGVVDIPI 204
Score = 67 (28.6 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPG 162
A+ + I+++D N++V+NKP + VH PG
Sbjct: 92 AKALTRGILHQDKNLVVINKPYGLPVHGGPG 122
>UNIPROTKB|F1S6H1 [details] [associations]
symbol:LOC100737111 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GeneTree:ENSGT00530000063800 OMA:SKARYIP EMBL:CU466237
EMBL:FP102836 RefSeq:XP_003482691.1 Ensembl:ENSSSCT00000016599
Ensembl:ENSSSCT00000025330 GeneID:100737111 KEGG:ssc:100737111
Uniprot:F1S6H1
Length = 376
Score = 100 (40.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 19/57 (33%), Positives = 36/57 (63%)
Query: 214 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPI 270
+ HRLDK T+G++V+A ++ + E F+ + + Y ++T VP S+G +++PI
Sbjct: 147 LCHRLDKETTGVMVLAWEKEVAHQVQELFRTRQVAKKYWAITVRVPVPSAGVVDIPI 203
Score = 68 (29.0 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPG 162
A+ + IV++D ++LV+NKP + VH PG
Sbjct: 91 AKALSRGIVHQDKDLLVINKPYGLPVHGGPG 121
>TIGR_CMR|NSE_0556 [details] [associations]
symbol:NSE_0556 "ribosomal large subunit pseudouridine
synthase C" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_506438.1
ProteinModelPortal:Q2GDK8 STRING:Q2GDK8 GeneID:3931346
KEGG:nse:NSE_0556 PATRIC:22681159 OMA:DINDNNG
ProtClustDB:CLSK2527953 BioCyc:NSEN222891:GHFU-574-MONOMER
Uniprot:Q2GDK8
Length = 305
Score = 85 (35.0 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 209 SIRPG--IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRI 266
SI P +VHRLDK T+G+L+ AK + L F +++ Y+++ G + G +
Sbjct: 127 SINPEYRVVHRLDKHTTGVLIFAKTLDAARELWRLFSNRLVKKSYLAIVIGELKEKKGVV 186
Query: 267 EVPISR 272
+ I++
Sbjct: 187 DCYINK 192
Score = 82 (33.9 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 33/117 (28%), Positives = 53/117 (45%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ ++ +Q ++R V +N VV K S V GD + + + LQ L +
Sbjct: 12 RLDKYLRDTFGQFPQSALQKALRKKAVRLNNSVV-KASAAVLKGDSLTLSANFLQILSSP 70
Query: 132 AEDIPLD----------------IVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI 172
E IP D ++YED+NVL ++KP V G T ++ N +
Sbjct: 71 RE-IPSDSSKVVDSKFVEFIASLMLYEDENVLAISKPFGFPVQSGYG-ITASIDNAM 125
>DICTYBASE|DDB_G0281097 [details] [associations]
symbol:DDB_G0281097 "pseudouridine synthase family
protein" species:44689 "Dictyostelium discoideum" [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0009451 "RNA
modification" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
dictyBase:DDB_G0281097 EMBL:AAFI02000040 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.10.290.10
eggNOG:COG0564 KO:K15454 RefSeq:XP_640817.1
ProteinModelPortal:Q54UF9 STRING:Q54UF9 EnsemblProtists:DDB0238343
GeneID:8622871 KEGG:ddi:DDB_G0281097 OMA:FAKERWF Uniprot:Q54UF9
Length = 578
Score = 104 (41.7 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 32/91 (35%), Positives = 48/91 (52%)
Query: 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPL 128
G+ LD + S SR I+ GL+ +N Q+VS S+ +K D + T+ +P
Sbjct: 177 GQSILDMF-SQEFSTNSRDVYLKKIKRGLIKVNDQLVSP-SYKIKLNDTIIHTVHRHEP- 233
Query: 129 RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHP 159
E I IV D+NV+VV+KP+ + VHP
Sbjct: 234 PVTGESIK--IVSLDENVVVVDKPSSIPVHP 262
Score = 67 (28.6 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 215 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSG 257
VHRLD+ TSGLL++A+ S + Q + + + Y++ G
Sbjct: 287 VHRLDRLTSGLLLLARTPDSANKKANQIQSGLVSKQYLAKVIG 329
>UNIPROTKB|E2R2N3 [details] [associations]
symbol:RPUSD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Ensembl:ENSCAFT00000035707 Uniprot:E2R2N3
Length = 305
Score = 100 (40.3 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 19/58 (32%), Positives = 37/58 (63%)
Query: 214 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPIS 271
+ HRLDK T+G++V+A ++ + E F+ + + Y ++T VP S+G +++PI+
Sbjct: 149 LCHRLDKETTGVMVLAWEKEVAHQVQEFFRTRQVAKKYWAITVRVPVPSAGVVDIPIT 206
Score = 61 (26.5 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPG 162
A+ + ++++D +++V+NKP + VH PG
Sbjct: 93 AKALSRGVLHQDKDLVVINKPYGLPVHGGPG 123
>UNIPROTKB|F1P0G3 [details] [associations]
symbol:RPUSD2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 TIGRFAMs:TIGR00005
GeneTree:ENSGT00420000029802 OMA:HLNEEPV EMBL:AADN02040041
IPI:IPI00585299 Ensembl:ENSGALT00000040443 Uniprot:F1P0G3
Length = 456
Score = 92 (37.4 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 21/70 (30%), Positives = 41/70 (58%)
Query: 90 QSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVV 149
+++ R+G + +N + V + +K D + T+ +P A+ P+ I+ E+D V+VV
Sbjct: 90 RAAARAGRLRLNEEPVQDLDVVLKNNDFLRNTVHRHEP-PVTAQ--PIQILVENDEVVVV 146
Query: 150 NKPAHMVVHP 159
+KP+ + VHP
Sbjct: 147 DKPSSLPVHP 156
Score = 75 (31.5 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 215 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPI 270
+HRLD+ TSG+L+ AK + EQ + +E+ Y+ G + E PI
Sbjct: 181 IHRLDRMTSGVLMFAKTVEVSKRIDEQVRERQLEKEYVCRVVGEFPEHEVVCEEPI 236
>FB|FBgn0032256 [details] [associations]
symbol:RluA-2 "RluA-2" species:7227 "Drosophila melanogaster"
[GO:0043723 "2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone
5'-phosphate deaminase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 SMART:SM00363 EMBL:AE014134
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0564 TIGRFAMs:TIGR00005 GeneTree:ENSGT00420000029802
OrthoDB:EOG473N6H EMBL:AY058686 RefSeq:NP_609411.1 UniGene:Dm.4124
SMR:Q9VKU8 IntAct:Q9VKU8 MINT:MINT-935784 STRING:Q9VKU8
EnsemblMetazoa:FBtr0080032 GeneID:34440 KEGG:dme:Dmel_CG6187
UCSC:CG6187-RA CTD:34440 FlyBase:FBgn0032256 InParanoid:Q9VKU8
GenomeRNAi:34440 NextBio:788509 Uniprot:Q9VKU8
Length = 547
Score = 100 (40.3 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 24/81 (29%), Positives = 46/81 (56%)
Query: 90 QSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ-PLRAEAEDIPLDIVYEDDNVLV 148
+ S+ +G +++N + V K + +K D++ + + P+ ++ P+ IVY D +++V
Sbjct: 173 ERSLEAGKLTVNSEKVPK-DYKIKHNDLLANVVHRHEVPVTSQ----PIKIVYMDKDIVV 227
Query: 149 VNKPAHMVVHPAPGNATGTLV 169
VNKPA + VHP T+V
Sbjct: 228 VNKPASIPVHPCGRYRHNTVV 248
Score = 68 (29.0 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 215 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSG 257
+HRLD+ TSGLL+ + L Q + +++ Y+ G
Sbjct: 263 IHRLDRLTSGLLLFGRTAEKARELELQIRTRQVQKEYVCRVEG 305
>UNIPROTKB|G4MYD1 [details] [associations]
symbol:MGG_08117 "DRAP deaminase" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CM001232 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 TIGRFAMs:TIGR00005 KO:K15454 RefSeq:XP_003715073.1
ProteinModelPortal:G4MYD1 EnsemblFungi:MGG_08117T0 GeneID:2678399
KEGG:mgr:MGG_08117 Uniprot:G4MYD1
Length = 487
Score = 99 (39.9 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 22/68 (32%), Positives = 40/68 (58%)
Query: 93 IRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKP 152
+ G V +N + V +H +K G+++ +P A+ P+ +++EDD ++V+NKP
Sbjct: 112 MEKGSVLVNAKKVGP-NHILKNGELIAHICHRHEP-PCTAD--PVQVLHEDDEMIVINKP 167
Query: 153 AHMVVHPA 160
+ M VHPA
Sbjct: 168 SGMPVHPA 175
Score = 67 (28.6 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 216 HRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSG 257
+RLD+ TSG++ +AK + + EQ T+ + Y++ G
Sbjct: 201 NRLDRLTSGIMFIAKTPQAACKMGEQIMGRTVRKEYLARVIG 242
>CGD|CAL0002400 [details] [associations]
symbol:orf19.3177 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0043723
"2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate
deaminase activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0009231 "riboflavin biosynthetic
process" evidence=IEA] InterPro:IPR002125 InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR016193 InterPro:IPR020103 Pfam:PF00383 Pfam:PF00849
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 CGD:CAL0002400
GO:GO:0008270 SUPFAM:SSF53927 GO:GO:0003723 GO:GO:0016787
EMBL:AACQ01000100 EMBL:AACQ01000097 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 TIGRFAMs:TIGR00005 eggNOG:COG0117 KO:K14655
RefSeq:XP_714595.1 RefSeq:XP_714726.1 ProteinModelPortal:Q59YK3
STRING:Q59YK3 GeneID:3643617 GeneID:3643740 KEGG:cal:CaO19.10687
KEGG:cal:CaO19.3177 Uniprot:Q59YK3
Length = 589
Score = 107 (42.7 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 31/103 (30%), Positives = 52/103 (50%)
Query: 73 LDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEA 132
+D +I D A + ++ GLV +N QV + + ++ GD+++ +P +
Sbjct: 112 IDVFIDEFRDRTPDA-YRMAVEEGLVKVNSQVAN-LETILRNGDLISHRSYRREP-PVSS 168
Query: 133 EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 175
DI IV+EDD++LV++KP + VHP G V I H
Sbjct: 169 RDIK--IVFEDDDLLVIDKPGGIPVHPT-GRYRYNTVTKIFEH 208
Score = 60 (26.2 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 214 IVH---RLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSG 257
IVH RLD+ TSGL+ + K ++ Q + + + YI+ G
Sbjct: 213 IVHPCNRLDRLTSGLMFLGKSSKGANNMMSQIRDRNVTKEYIARVKG 259
>TIGR_CMR|GSU_3160 [details] [associations]
symbol:GSU_3160 "RNA pseudouridine synthase family
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275920 KO:K06175
OMA:FANHSIE RefSeq:NP_954201.1 ProteinModelPortal:Q747V5
GeneID:2686768 KEGG:gsu:GSU3160 PATRIC:22029179
ProtClustDB:CLSK763245 BioCyc:GSUL243231:GH27-3194-MONOMER
Uniprot:Q747V5
Length = 250
Score = 98 (39.6 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 207 GASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSG-VPSQSSGR 265
G + P VHRLDK TSG+LV A D + L + F + + Y+++T G VP + G
Sbjct: 43 GRRVYP--VHRLDKPTSGVLVFALDPATARSLGDAFAGGRVNKTYLAVTRGIVPPE--GI 98
Query: 266 IEVPISRDPN 275
I+ +S +P+
Sbjct: 99 IDHSLSEEPD 108
Score = 58 (25.5 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 137 LDIVYEDDNVLVVNKPAHMVVHPAP 161
++I++ D ++ V+KPA ++VH +P
Sbjct: 1 MEILFRDQYLVAVHKPAGLLVHRSP 25
>UNIPROTKB|Q5E9Z1 [details] [associations]
symbol:RPUSD4 "RNA pseudouridylate synthase
domain-containing protein 4" species:9913 "Bos taurus" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 GO:GO:0005739 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39
eggNOG:COG0564 GeneTree:ENSGT00530000063800 EMBL:BT020717
EMBL:BT020773 EMBL:BT020778 EMBL:BT021642 EMBL:BT021761
EMBL:BT025340 EMBL:BT025483 EMBL:BT026244 EMBL:BC134590
IPI:IPI00713333 RefSeq:NP_001015616.1 UniGene:Bt.31431
ProteinModelPortal:Q5E9Z1 Ensembl:ENSBTAT00000027843 GeneID:516934
KEGG:bta:516934 CTD:84881 HOVERGEN:HBG054698 InParanoid:Q5E9Z1
NextBio:20872338 Uniprot:Q5E9Z1
Length = 377
Score = 98 (39.6 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 20/65 (30%), Positives = 38/65 (58%)
Query: 207 GASIRP-GIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGR 265
G +P + HRLDK T+G++V+A ++ + E F+ + + Y ++T VP +G
Sbjct: 140 GPKAKPLHLCHRLDKETTGVMVLAWEKEVAHQVQELFRTRQVTKKYWAITVRVPVPEAGV 199
Query: 266 IEVPI 270
+++PI
Sbjct: 200 VDIPI 204
Score = 64 (27.6 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPG 162
A+ + IV++D ++V+NKP + VH PG
Sbjct: 92 AKALSRGIVHQDKELVVINKPYGLPVHGGPG 122
>UNIPROTKB|F6XEH2 [details] [associations]
symbol:RPUSD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GeneTree:ENSGT00530000063800 OMA:SKARYIP Ensembl:ENSCAFT00000035707
EMBL:AAEX03003379 ProteinModelPortal:F6XEH2 Uniprot:F6XEH2
Length = 378
Score = 100 (40.3 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 19/58 (32%), Positives = 37/58 (63%)
Query: 214 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPIS 271
+ HRLDK T+G++V+A ++ + E F+ + + Y ++T VP S+G +++PI+
Sbjct: 149 LCHRLDKETTGVMVLAWEKEVAHQVQEFFRTRQVAKKYWAITVRVPVPSAGVVDIPIT 206
Score = 61 (26.5 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPG 162
A+ + ++++D +++V+NKP + VH PG
Sbjct: 93 AKALSRGVLHQDKDLVVINKPYGLPVHGGPG 123
>RGD|1306147 [details] [associations]
symbol:Rpusd2 "RNA pseudouridylate synthase domain containing 2"
species:10116 "Rattus norvegicus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
RGD:1306147 GO:GO:0003723 EMBL:CH473949 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 TIGRFAMs:TIGR00005 GeneTree:ENSGT00420000029802
CTD:27079 OMA:HLNEEPV OrthoDB:EOG4DV5KW IPI:IPI00914730
RefSeq:NP_001129317.1 RefSeq:XP_003749602.1 UniGene:Rn.23750
Ensembl:ENSRNOT00000014129 GeneID:100911166 GeneID:311326
KEGG:rno:100911166 KEGG:rno:311326 UCSC:RGD:1306147 NextBio:663325
Uniprot:D4ACD4
Length = 553
Score = 95 (38.5 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 21/73 (28%), Positives = 45/73 (61%)
Query: 87 ARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNV 146
A ++++R+G + +N + V ++ +K D + T+ +P AE P+ ++ E+D+V
Sbjct: 189 AYYEAAVRAGRLHLNEEPVQDLNIVLKDNDFLRNTVHRHEP-PVTAE--PIRLLAENDDV 245
Query: 147 LVVNKPAHMVVHP 159
+V++KP+ + VHP
Sbjct: 246 VVIDKPSSIPVHP 258
Score = 70 (29.7 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 215 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSG 257
+HRLD+ TSG+L+ AK + EQ + +E+ Y+ +G
Sbjct: 283 LHRLDRLTSGVLMFAKTAAVSEKIHEQVRDRQLEKEYVCRVAG 325
>SGD|S000003401 [details] [associations]
symbol:PUS6 "tRNA:pseudouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IMP;IDA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IMP;IDA] [GO:0005739 "mitochondrion" evidence=IEA;IDA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
SGD:S000003401 GO:GO:0005739 EMBL:BK006941 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 RefSeq:NP_011690.3 GeneID:853085
KEGG:sce:YGR174C RefSeq:NP_011685.3 GeneID:853079 KEGG:sce:YGR169C
KO:K15453 GO:GO:0031119 eggNOG:COG0564 EMBL:Z72954 PIR:S64480
ProteinModelPortal:P53294 SMR:P53294 DIP:DIP-5429N MINT:MINT-544439
STRING:P53294 PaxDb:P53294 PeptideAtlas:P53294 EnsemblFungi:YGR169C
CYGD:YGR169c GeneTree:ENSGT00510000048339 HOGENOM:HOG000167783
OMA:KWYLARV OrthoDB:EOG40CMS0 BioCyc:MetaCyc:MONOMER-16704
NextBio:973044 Genevestigator:P53294 GermOnline:YGR169C
Uniprot:P53294
Length = 404
Score = 86 (35.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 23/79 (29%), Positives = 44/79 (55%)
Query: 93 IRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQP-------LRAEAEDIP-----LDIV 140
IR G+ + +++ + +K D++ T + +P EAED+P +IV
Sbjct: 66 IRDGVPLVPDHLMTTI---IKNHDVLETTTHKHEPPVKQWCSQEVEAEDLPGRIAGFNIV 122
Query: 141 YEDDNVLVVNKPAHMVVHP 159
+ED+++LV++KP+ + VHP
Sbjct: 123 FEDESILVIDKPSGIPVHP 141
Score = 76 (31.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 216 HRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSG 257
+RLDK TSGLL++AK+ S + + + + ++Y++ G
Sbjct: 165 YRLDKITSGLLILAKNSQSAGEIQKSIRSRDMIKIYLARVKG 206
>UNIPROTKB|F1N088 [details] [associations]
symbol:RPUSD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
TIGRFAMs:TIGR00005 GeneTree:ENSGT00420000029802 OMA:HLNEEPV
EMBL:DAAA02028551 IPI:IPI01002170 Ensembl:ENSBTAT00000004148
Uniprot:F1N088
Length = 552
Score = 95 (38.5 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 22/73 (30%), Positives = 45/73 (61%)
Query: 87 ARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNV 146
A ++++R+G + +N + V +S +K D + T+ +P AE P+ ++ E+++V
Sbjct: 183 AYYEAAVRAGRLHLNEEPVQDLSIVLKDNDFLRNTVHRHEP-PVTAE--PIRLLAENEDV 239
Query: 147 LVVNKPAHMVVHP 159
+VV+KP+ + VHP
Sbjct: 240 VVVDKPSSIPVHP 252
Score = 68 (29.0 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 215 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSG 257
+HRLD+ TSG+L+ AK + EQ + +E+ Y+ G
Sbjct: 277 LHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVVG 319
>MGI|MGI:1918066 [details] [associations]
symbol:Rpusd2 "RNA pseudouridylate synthase domain
containing 2" species:10090 "Mus musculus" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 MGI:MGI:1918066 GO:GO:0003723
EMBL:AL772264 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0564 TIGRFAMs:TIGR00005 HOGENOM:HOG000167783
GeneTree:ENSGT00420000029802 CTD:27079 HOVERGEN:HBG103625
OMA:HLNEEPV OrthoDB:EOG4DV5KW EMBL:AK044767 EMBL:BC117827
EMBL:BC117828 IPI:IPI00120035 RefSeq:NP_775626.1 UniGene:Mm.33617
ProteinModelPortal:Q149F1 SMR:Q149F1 STRING:Q149F1
PhosphoSite:Q149F1 PRIDE:Q149F1 Ensembl:ENSMUST00000028796
GeneID:271842 KEGG:mmu:271842 UCSC:uc008lsz.2 InParanoid:Q149F1
NextBio:393510 Bgee:Q149F1 CleanEx:MM_RPUSD2 Genevestigator:Q149F1
Uniprot:Q149F1
Length = 553
Score = 93 (37.8 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 20/70 (28%), Positives = 44/70 (62%)
Query: 90 QSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVV 149
++++R+G + +N + V +S +K D + T+ +P AE P+ ++ E+++V+V+
Sbjct: 192 EAAVRAGRLHLNEEPVQDLSIVLKDNDFLRNTVHRHEP-PVTAE--PIHLLAENNDVVVI 248
Query: 150 NKPAHMVVHP 159
+KP+ + VHP
Sbjct: 249 DKPSSIPVHP 258
Score = 70 (29.7 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 215 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSG 257
+HRLD+ TSG+L+ AK + EQ + +E+ Y+ +G
Sbjct: 283 LHRLDRLTSGVLMFAKTAAVSEKIHEQVRDRQLEKEYVCRVAG 325
>FB|FBgn0051719 [details] [associations]
symbol:RluA-1 "RluA-1" species:7227 "Drosophila melanogaster"
[GO:0008835 "diaminohydroxyphosphoribosylaminopyrimidine deaminase
activity" evidence=ISS] [GO:0009231 "riboflavin biosynthetic
process" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564
TIGRFAMs:TIGR00005 EMBL:BT003451 ProteinModelPortal:Q86P70
SMR:Q86P70 STRING:Q86P70 PaxDb:Q86P70 PRIDE:Q86P70
FlyBase:FBgn0051719 InParanoid:Q86P70 OrthoDB:EOG473N6H
ArrayExpress:Q86P70 Bgee:Q86P70 Uniprot:Q86P70
Length = 739
Score = 89 (36.4 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 23/78 (29%), Positives = 44/78 (56%)
Query: 93 IRSGLVSINGQVVSKVSHNVKGGDMV-NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNK 151
I++G +++N + V + + +K D++ N P+ + P+ IV+ D++++VVNK
Sbjct: 337 IQTGTLTVNFEKVP-IDYRLKHNDLLANIVHRHEVPVTCQ----PIKIVHMDEDIVVVNK 391
Query: 152 PAHMVVHPAPGNATGTLV 169
PA + VHP T+V
Sbjct: 392 PASIPVHPCGRYRHNTVV 409
Score = 77 (32.2 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 215 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGV 258
+HRLD+ TSGLL+ + + +Q + +E+ YI GV
Sbjct: 424 IHRLDRLTSGLLLFGRSPKKARQMEQQIRNRQVEKEYICRVEGV 467
>WB|WBGene00019498 [details] [associations]
symbol:K07E8.7 species:6239 "Caenorhabditis elegans"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564
TIGRFAMs:TIGR00005 GeneTree:ENSGT00420000029802 OMA:HLNEEPV
EMBL:FO081602 PIR:T32044 RefSeq:NP_493778.1
ProteinModelPortal:O16686 SMR:O16686 STRING:O16686 PaxDb:O16686
EnsemblMetazoa:K07E8.7 GeneID:173456 KEGG:cel:CELE_K07E8.7
UCSC:K07E8.7 CTD:173456 WormBase:K07E8.7 HOGENOM:HOG000155606
InParanoid:O16686 NextBio:879741 Uniprot:O16686
Length = 432
Score = 88 (36.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 22/86 (25%), Positives = 45/86 (52%)
Query: 85 SRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ-PLRAEAEDIPLDIVYED 143
+R + + + G + +NG+ ++ V + ++ GD V + P+R D+P+ ++ E
Sbjct: 99 NRNYAKIACKMGRIYVNGEQMTDVDYVMRNGDRVEHWAHRHEHPIR----DLPIRVISET 154
Query: 144 DNVLVVNKPAHMVVHPAPGNATGTLV 169
D++ VV KP + VH A T++
Sbjct: 155 DDLFVVEKPPSLPVHTCGQYAIHTVL 180
Score = 72 (30.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 214 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPI 270
++HRLD+ TSG+L+ AK+ + K + YI GV E PI
Sbjct: 194 VLHRLDRATSGVLLFAKNYETDLEFKTTLKQGEWSKEYICKVDGVFPDEEQVCEQPI 250
>UNIPROTKB|Q8IZ73 [details] [associations]
symbol:RPUSD2 "RNA pseudouridylate synthase
domain-containing protein 2" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564
TIGRFAMs:TIGR00005 HOGENOM:HOG000167783 EMBL:AK055971 EMBL:BC007697
EMBL:BC016967 EMBL:U67934 IPI:IPI00150963 RefSeq:NP_689473.1
UniGene:Hs.173311 ProteinModelPortal:Q8IZ73 SMR:Q8IZ73
IntAct:Q8IZ73 STRING:Q8IZ73 PhosphoSite:Q8IZ73 DMDM:158563848
PaxDb:Q8IZ73 PeptideAtlas:Q8IZ73 PRIDE:Q8IZ73
Ensembl:ENST00000315616 GeneID:27079 KEGG:hsa:27079 UCSC:uc001zmd.1
CTD:27079 GeneCards:GC15P040861 HGNC:HGNC:24180 HPA:HPA042079
HPA:HPA042194 neXtProt:NX_Q8IZ73 PharmGKB:PA134866412
HOVERGEN:HBG103625 InParanoid:Q8IZ73 OMA:HLNEEPV OrthoDB:EOG4DV5KW
PhylomeDB:Q8IZ73 GenomeRNAi:27079 NextBio:49685 ArrayExpress:Q8IZ73
Bgee:Q8IZ73 CleanEx:HS_RPUSD2 Genevestigator:Q8IZ73 Uniprot:Q8IZ73
Length = 545
Score = 92 (37.4 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 21/73 (28%), Positives = 45/73 (61%)
Query: 87 ARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNV 146
A ++++R+G + +N + V ++ +K D + T+ +P AE P+ ++ E+++V
Sbjct: 176 AYYEAAVRAGRLQLNEKPVQDLNIVLKDNDFLRNTVHRHEP-PVTAE--PIRLLAENEDV 232
Query: 147 LVVNKPAHMVVHP 159
+VV+KP+ + VHP
Sbjct: 233 VVVDKPSSIPVHP 245
Score = 70 (29.7 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 215 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSG 257
+HRLD+ TSG+L+ AK + EQ + +E+ Y+ G
Sbjct: 270 LHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEG 312
>CGD|CAL0004292 [details] [associations]
symbol:orf19.2788 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
CGD:CAL0004292 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 EMBL:AACQ01000185 RefSeq:XP_711730.1
ProteinModelPortal:Q59PV5 STRING:Q59PV5 GeneID:3646675
KEGG:cal:CaO19.2788 Uniprot:Q59PV5
Length = 402
Score = 85 (35.0 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 216 HRLDKGTSGLLVVAKDEHSHAHLSEQF---KLHTIERVYISLTSGVPSQSSGRIEVPI 270
HRLDK TSG+LV+AK ++ S+ K HT E+ Y++ SG + R PI
Sbjct: 155 HRLDKVTSGVLVLAKTKNGGVRFSKLMRDSKQHT-EKTYLARVSGKFPEGIHRYRCPI 211
Score = 72 (30.4 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 140 VYEDDNVLVVNKPAHMVVHPAPGN 163
VYEDD +LVV+KP+ + HP GN
Sbjct: 110 VYEDDEILVVDKPSGIPTHPT-GN 132
>UNIPROTKB|Q59PV5 [details] [associations]
symbol:CaO19.2788 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
CGD:CAL0004292 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 EMBL:AACQ01000185 RefSeq:XP_711730.1
ProteinModelPortal:Q59PV5 STRING:Q59PV5 GeneID:3646675
KEGG:cal:CaO19.2788 Uniprot:Q59PV5
Length = 402
Score = 85 (35.0 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 216 HRLDKGTSGLLVVAKDEHSHAHLSEQF---KLHTIERVYISLTSGVPSQSSGRIEVPI 270
HRLDK TSG+LV+AK ++ S+ K HT E+ Y++ SG + R PI
Sbjct: 155 HRLDKVTSGVLVLAKTKNGGVRFSKLMRDSKQHT-EKTYLARVSGKFPEGIHRYRCPI 211
Score = 72 (30.4 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 140 VYEDDNVLVVNKPAHMVVHPAPGN 163
VYEDD +LVV+KP+ + HP GN
Sbjct: 110 VYEDDEILVVDKPSGIPTHPT-GN 132
>TIGR_CMR|CJE_0808 [details] [associations]
symbol:CJE_0808 "RNA pseudouridine synthase family
protein" species:195099 "Campylobacter jejuni RM1221" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564 KO:K06180
RefSeq:YP_178812.1 ProteinModelPortal:Q5HV73 STRING:Q5HV73
GeneID:3230758 KEGG:cjr:CJE0808 PATRIC:20043361
HOGENOM:HOG000275921 OMA:YITSEEI ProtClustDB:CLSK872473
BioCyc:CJEJ195099:GJC0-823-MONOMER Uniprot:Q5HV73
Length = 250
Score = 95 (38.5 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 214 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPI 270
+++RLDK TSG++++ KDE E+FK H + + YI++ GV ++ + PI
Sbjct: 88 LLNRLDKETSGVILLCKDEDFRKLCIEEFKKHRVYKSYIAVLDGVLAEEV-EVNEPI 143
Score = 53 (23.7 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 139 IVYEDDNVLVVNKP 152
I++EDD ++ +NKP
Sbjct: 59 IIFEDDKIIAINKP 72
>UNIPROTKB|Q9KRH4 [details] [associations]
symbol:VC1668 "Pseudouridine synthase" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0009451 "RNA
modification" evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0009451 KO:K06177 OMA:GWVIGDM
InterPro:IPR006508 TIGRFAMs:TIGR01621 EMBL:AE004244 PIR:E82173
RefSeq:NP_231304.1 ProteinModelPortal:Q9KRH4 DNASU:2613799
GeneID:2613799 KEGG:vch:VC1668 PATRIC:20082398
ProtClustDB:CLSK2298316 Uniprot:Q9KRH4
Length = 235
Score = 103 (41.3 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 214 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRI 266
+VHRLDK TSG+L++A++ + + LS+ F +E+ Y+++ S P + G I
Sbjct: 46 LVHRLDKMTSGILLLARNATAASELSQGFAKRKVEKFYLAIGSKKPKKKQGLI 98
Score = 42 (19.8 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 138 DIVYEDDNVLVVNKPAHMVVHPAPGN 163
DI++ + L++NK ++ VH G+
Sbjct: 3 DILFTHPDFLLINKHPNVSVHKDDGD 28
>TIGR_CMR|VC_1668 [details] [associations]
symbol:VC_1668 "pseudouridine synthase Rlu family protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0009451 KO:K06177 OMA:GWVIGDM
InterPro:IPR006508 TIGRFAMs:TIGR01621 EMBL:AE004244 PIR:E82173
RefSeq:NP_231304.1 ProteinModelPortal:Q9KRH4 DNASU:2613799
GeneID:2613799 KEGG:vch:VC1668 PATRIC:20082398
ProtClustDB:CLSK2298316 Uniprot:Q9KRH4
Length = 235
Score = 103 (41.3 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 214 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRI 266
+VHRLDK TSG+L++A++ + + LS+ F +E+ Y+++ S P + G I
Sbjct: 46 LVHRLDKMTSGILLLARNATAASELSQGFAKRKVEKFYLAIGSKKPKKKQGLI 98
Score = 42 (19.8 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 138 DIVYEDDNVLVVNKPAHMVVHPAPGN 163
DI++ + L++NK ++ VH G+
Sbjct: 3 DILFTHPDFLLINKHPNVSVHKDDGD 28
>UNIPROTKB|F1PK69 [details] [associations]
symbol:RPUSD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 TIGRFAMs:TIGR00005
GeneTree:ENSGT00420000029802 OMA:HLNEEPV EMBL:AAEX03016068
Ensembl:ENSCAFT00000014582 Uniprot:F1PK69
Length = 552
Score = 88 (36.0 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 20/70 (28%), Positives = 43/70 (61%)
Query: 90 QSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVV 149
++++R+G + +N + V +S +K D + + +P AE P+ ++ E+++V+VV
Sbjct: 186 EAAVRAGRLHLNEEPVQDLSIMLKDNDFLRNRVHRHEP-PVTAE--PVRLLAENEDVVVV 242
Query: 150 NKPAHMVVHP 159
+KP+ + VHP
Sbjct: 243 DKPSSIPVHP 252
Score = 70 (29.7 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 215 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSG 257
+HRLD+ TSG+L+ AK + EQ + +E+ Y+ G
Sbjct: 277 LHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEG 319
>POMBASE|SPAC18B11.02c [details] [associations]
symbol:SPAC18B11.02c "tRNA pseudouridine synthase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0009982
"pseudouridine synthase activity" evidence=ISO] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=ISO] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PomBase:SPAC18B11.02c GO:GO:0005829
GO:GO:0005739 GO:GO:0005634 EMBL:CU329670 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 eggNOG:COG0564
TIGRFAMs:TIGR00005 HOGENOM:HOG000167783 KO:K15454 OrthoDB:EOG4BK8C8
PIR:T37912 RefSeq:NP_592881.1 ProteinModelPortal:Q09709
STRING:Q09709 EnsemblFungi:SPAC18B11.02c.1 GeneID:2542607
KEGG:spo:SPAC18B11.02c OMA:YRKNTVV NextBio:20803656 Uniprot:Q09709
Length = 394
Score = 104 (41.7 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 27/91 (29%), Positives = 51/91 (56%)
Query: 90 QSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVV 149
+ +IR+G V +N Q+ V ++ G +V+ +P D P+ IV+ED++ +V+
Sbjct: 62 EKAIRNGQVKVNNQI-GNVDTLIENGYIVSHHAHRHEP---PVSDQPVGIVHEDESYVVI 117
Query: 150 NKPAHMVVHPAPGNATGTLVNGIL--HHCSL 178
+KPA + VHP T+++ ++ + CSL
Sbjct: 118 DKPAGVPVHPTGRYNHNTVLHILMKENKCSL 148
Score = 47 (21.6 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 216 HRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIER 249
+RLD+ TSGL+ +K + +E+ ++H I +
Sbjct: 153 NRLDRLTSGLMFFSKSPKA----AEEMRVHMISK 182
>ASPGD|ASPL0000068180 [details] [associations]
symbol:AN10936 species:162425 "Emericella nidulans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0043723
"2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate
deaminase activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0009231 "riboflavin biosynthetic
process" evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:BN001304 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 TIGRFAMs:TIGR00005 OMA:GHPISND
EnsemblFungi:CADANIAT00000078 Uniprot:C8VCJ6
Length = 572
Score = 87 (35.7 bits), Expect = 0.00087, Sum P(2) = 0.00086
Identities = 22/70 (31%), Positives = 41/70 (58%)
Query: 90 QSSIRSGLVSINGQVVSKVSHNV-KGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLV 148
+ ++ SG V +NG+ H V K G++++ T+ +P E + I++E D++LV
Sbjct: 82 KKALESGNVCVNGKPAGP--HTVLKNGEVISHTLHRHEPPVTGNE---IGIIHETDDLLV 136
Query: 149 VNKPAHMVVH 158
++KPA + VH
Sbjct: 137 IDKPAGVPVH 146
Score = 70 (29.7 bits), Expect = 0.00087, Sum P(2) = 0.00086
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 207 GASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRI 266
G + P +RLD+ TSG++ V K ++ + K T+++ Y++ G +
Sbjct: 165 GGAYVPRPCNRLDRLTSGVMFVGKTAQGADRMTVKLKERTVQKEYVARVKGRFPDGVVVV 224
Query: 267 EVPI-SRDPN---NRIR 279
+ PI S P NR+R
Sbjct: 225 DQPIMSVSPKVGLNRVR 241
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.131 0.379 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 299 270 0.00097 114 3 11 22 0.37 34
32 0.40 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 70
No. of states in DFA: 606 (64 KB)
Total size of DFA: 182 KB (2105 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.24u 0.10s 19.34t Elapsed: 00:00:01
Total cpu time: 19.24u 0.11s 19.35t Elapsed: 00:00:01
Start: Tue May 21 01:39:00 2013 End: Tue May 21 01:39:01 2013