Query 022299
Match_columns 299
No_of_seqs 187 out of 1726
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 03:13:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022299.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022299hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v9f_A Ribosomal large subunit 100.0 5.5E-39 1.9E-43 303.0 14.4 196 60-283 6-201 (325)
2 1ksk_A Ribosomal small subunit 100.0 1.3E-32 4.3E-37 248.1 10.9 144 69-262 2-146 (234)
3 1vio_A Ribosomal small subunit 100.0 8.2E-32 2.8E-36 244.3 10.1 143 70-262 2-145 (243)
4 3dh3_A Ribosomal large subunit 100.0 1.9E-30 6.6E-35 241.3 12.8 144 68-261 4-147 (290)
5 2i82_A Ribosomal large subunit 99.9 2.7E-26 9.2E-31 204.8 13.7 105 137-274 12-117 (217)
6 1v9k_A Ribosomal large subunit 99.9 2.2E-25 7.5E-30 200.3 14.6 106 138-274 3-108 (228)
7 2oml_A Ribosomal large subunit 99.9 3.8E-24 1.3E-28 186.9 5.1 98 137-271 4-102 (189)
8 2olw_A Ribosomal large subunit 99.9 8.4E-24 2.9E-28 188.9 5.1 99 135-270 30-129 (217)
9 2gml_A Ribosomal large subunit 99.7 2.9E-18 9.8E-23 154.9 7.6 82 143-261 13-94 (237)
10 2k6p_A Uncharacterized protein 98.8 5.9E-10 2E-14 85.9 -0.4 75 71-146 1-83 (92)
11 1dm9_A Hypothetical 15.5 KD pr 98.6 7E-08 2.4E-12 79.5 7.5 57 66-123 4-60 (133)
12 2vqe_D 30S ribosomal protein S 98.5 5.3E-08 1.8E-12 86.1 3.5 81 69-162 97-180 (209)
13 1p9k_A ORF, hypothetical prote 98.4 3.3E-08 1.1E-12 74.0 0.8 54 68-122 18-72 (79)
14 1c05_A Ribosomal protein S4 de 98.4 5.4E-07 1.8E-11 76.4 6.6 82 69-162 49-130 (159)
15 2cqj_A BRMS2, U3 small nucleol 98.2 8.1E-07 2.8E-11 65.4 2.9 51 70-120 7-59 (71)
16 3r8n_D 30S ribosomal protein S 98.2 5E-07 1.7E-11 79.5 1.8 55 69-123 93-147 (205)
17 3hp7_A Hemolysin, putative; st 98.1 2.9E-06 1E-10 78.5 4.9 55 69-123 5-61 (291)
18 3bbn_D Ribosomal protein S4; s 98.0 1.8E-06 6.3E-11 75.7 3.3 54 70-123 88-141 (201)
19 3j20_D 30S ribosomal protein S 97.8 1.1E-05 3.7E-10 69.6 3.5 53 70-122 102-156 (180)
20 2xzm_D Ribosomal protein S4 co 97.7 1.6E-05 5.5E-10 68.6 3.8 52 70-121 106-157 (181)
21 3u5c_J 40S ribosomal protein S 97.4 6.1E-05 2.1E-09 65.7 2.8 51 70-120 106-158 (197)
22 1k8w_A TRNA pseudouridine synt 96.9 0.00098 3.3E-08 62.4 5.5 72 144-258 25-97 (327)
23 1r3e_A TRNA pseudouridine synt 96.8 0.00085 2.9E-08 62.3 4.5 72 144-258 3-75 (309)
24 2aus_C Pseudouridine synthase; 96.8 0.00092 3.1E-08 62.8 4.5 71 143-256 45-115 (334)
25 3iz6_C 40S ribosomal protein S 96.8 9.7E-06 3.3E-10 70.6 -8.4 53 70-123 108-161 (195)
26 3j20_E 30S ribosomal protein S 96.7 0.0031 1.1E-07 56.5 7.2 55 68-122 40-95 (243)
27 1sgv_A TRNA pseudouridine synt 96.7 0.0012 4.1E-08 61.5 4.3 73 143-258 5-78 (316)
28 2apo_A Probable tRNA pseudouri 96.5 0.0017 5.7E-08 61.6 4.3 71 143-256 65-135 (357)
29 3kbg_A 30S ribosomal protein S 96.3 0.0052 1.8E-07 54.0 6.0 53 68-120 5-58 (213)
30 3u28_A H/ACA ribonucleoprotein 96.3 0.0058 2E-07 58.6 6.4 73 143-258 58-131 (400)
31 3iz6_D 40S ribosomal protein S 93.7 0.073 2.5E-06 48.2 5.1 54 69-122 40-94 (265)
32 2xzm_W 40S ribosomal protein S 93.6 0.16 5.6E-06 45.7 7.3 55 68-122 39-96 (260)
33 3u5c_E RP5, S7, YS6, 40S ribos 91.6 0.075 2.6E-06 48.0 2.3 54 69-122 40-94 (261)
34 1fm0_D Molybdopterin convertin 89.7 0.75 2.6E-05 33.1 5.9 51 68-121 23-75 (81)
35 1jil_A Tyrrs, tyrosyl-tRNA syn 89.4 0.068 2.3E-06 51.6 0.0 49 70-118 352-400 (420)
36 1h3f_A Tyrosyl-tRNA synthetase 88.3 0.61 2.1E-05 45.1 5.8 47 70-116 368-414 (432)
37 2jan_A Tyrosyl-tRNA synthetase 87.0 0.43 1.5E-05 46.1 3.9 45 72-116 357-401 (432)
38 2ktl_A Tyrosyl-tRNA synthetase 82.0 1.1 3.9E-05 37.6 3.8 36 70-105 49-84 (164)
39 2ts1_A Tyrosyl-tRNA synthetase 80.4 0.34 1.2E-05 46.7 0.0 49 70-118 351-399 (419)
40 2hj1_A Hypothetical protein; s 74.3 0.4 1.4E-05 36.8 -1.1 52 69-123 34-85 (97)
41 3rpf_C Molybdopterin convertin 74.2 1.6 5.4E-05 31.2 2.1 49 70-121 20-68 (74)
42 1wv3_A Similar to DNA segregat 73.3 4 0.00014 35.9 5.0 41 94-149 133-174 (238)
43 3fm8_A Kinesin-like protein KI 69.3 5.5 0.00019 31.6 4.5 25 96-121 90-114 (124)
44 2q5w_D Molybdopterin convertin 69.1 3.7 0.00012 29.1 3.1 24 97-121 48-71 (77)
45 1rws_A Hypothetical protein PF 68.0 2.9 0.0001 30.0 2.4 43 69-121 29-71 (77)
46 3po0_A Small archaeal modifier 66.7 4.8 0.00016 29.4 3.4 25 96-121 59-83 (89)
47 3hvz_A Uncharacterized protein 60.9 6.3 0.00022 28.7 3.1 24 98-122 44-67 (78)
48 1ryj_A Unknown; beta/alpha pro 59.3 7.7 0.00026 27.2 3.2 43 69-121 22-64 (70)
49 2cu3_A Unknown function protei 57.2 8.7 0.0003 26.4 3.1 44 69-121 12-58 (64)
50 1vjk_A Molybdopterin convertin 56.8 5.2 0.00018 30.0 2.1 24 97-121 69-92 (98)
51 3dwg_C 9.5 kDa culture filtrat 56.4 8 0.00027 28.4 3.0 25 97-121 60-87 (93)
52 1tyg_B YJBS; alpha beta barrel 55.7 9.8 0.00034 28.3 3.4 44 69-121 34-81 (87)
53 4egx_A Kinesin-like protein KI 54.6 11 0.00037 31.9 3.9 24 96-120 140-163 (184)
54 1f0z_A THis protein; ubiquitin 53.7 7.2 0.00025 26.9 2.3 45 68-121 13-60 (66)
55 2kl0_A Putative thiamin biosyn 53.3 6.5 0.00022 28.1 2.0 45 69-122 13-60 (73)
56 2g1e_A Hypothetical protein TA 52.8 24 0.00081 25.4 5.1 50 70-121 24-84 (90)
57 2k5p_A THis protein, thiamine- 51.6 7.3 0.00025 28.2 2.1 46 69-122 16-64 (78)
58 4ejq_A Kinesin-like protein KI 47.8 13 0.00044 30.3 3.2 24 96-120 110-133 (154)
59 2kmm_A Guanosine-3',5'-BIS(dip 46.9 14 0.00047 25.5 2.9 46 69-122 17-62 (73)
60 2k9x_A Tburm1, uncharacterized 45.8 13 0.00045 28.8 2.8 44 73-120 40-95 (110)
61 2og0_A Excisionase; protein-DN 40.5 29 0.001 23.2 3.6 29 71-99 3-31 (52)
62 1wgk_A Riken cDNA 2900073H19 p 40.3 5.6 0.00019 31.1 -0.1 45 73-120 48-101 (114)
63 3uv0_A Mutator 2, isoform B; F 39.9 9.3 0.00032 29.5 1.0 23 94-118 60-82 (102)
64 2l32_A Small archaeal modifier 39.4 9.5 0.00033 27.3 1.0 43 68-121 18-60 (74)
65 2rsx_A Uncharacterized protein 38.0 73 0.0025 26.3 6.3 53 50-105 42-95 (159)
66 3hx1_A SLR1951 protein; P74513 36.1 24 0.00081 27.8 3.0 24 96-121 82-105 (131)
67 1wln_A Afadin; beta sandwich, 35.9 16 0.00056 28.2 2.0 26 95-121 79-104 (120)
68 2qjl_A URM1, ubiquitin-related 34.5 29 0.001 25.8 3.1 25 97-121 66-93 (99)
69 3gqs_A Adenylate cyclase-like 34.0 20 0.00068 26.9 2.1 25 96-121 69-93 (106)
70 2l52_A Methanosarcina acetivor 33.6 16 0.00053 27.4 1.4 25 97-121 66-93 (99)
71 1vc3_B L-aspartate-alpha-decar 33.5 31 0.0011 26.2 3.1 23 95-121 42-64 (96)
72 3oug_A Aspartate 1-decarboxyla 33.5 39 0.0013 26.4 3.7 23 95-121 69-91 (114)
73 1v8c_A MOAD related protein; r 32.0 30 0.001 28.7 3.0 25 97-121 54-81 (168)
74 1uhe_A Aspartate 1-decarboxyla 28.3 31 0.0011 26.3 2.3 23 95-121 40-62 (97)
75 4h87_A Kanadaptin; FHA domain 28.2 45 0.0015 26.2 3.4 25 96-121 94-120 (130)
76 3po8_A RV0020C protein, putati 28.2 33 0.0011 25.3 2.4 24 96-121 65-88 (100)
77 1pqh_A Aspartate 1-decarboxyla 27.9 39 0.0013 27.4 2.9 23 95-121 83-105 (143)
78 2jqj_A DNA damage response pro 26.0 39 0.0013 27.1 2.7 28 94-121 85-112 (151)
79 1r21_A Antigen KI-67; beta san 26.0 34 0.0012 26.5 2.3 25 96-121 75-99 (128)
80 1pm6_A Excisionase; antiparall 25.8 56 0.0019 23.3 3.2 29 71-99 3-31 (72)
81 3p42_A Predicted protein; beta 24.8 35 0.0012 29.8 2.3 49 68-123 145-203 (236)
82 3plx_B Aspartate 1-decarboxyla 23.7 38 0.0013 26.0 2.0 23 95-121 41-63 (102)
83 2xt9_B Putative signal transdu 22.7 52 0.0018 24.9 2.7 24 96-121 73-96 (115)
84 2c45_A Aspartate 1-decarboxyla 20.8 51 0.0017 26.7 2.3 23 95-121 66-88 (139)
85 2pie_A E3 ubiquitin-protein li 20.4 72 0.0024 25.1 3.2 26 96-122 75-102 (138)
No 1
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=100.00 E-value=5.5e-39 Score=303.02 Aligned_cols=196 Identities=39% Similarity=0.611 Sum_probs=107.8
Q ss_pred EEEEEcCCCccchHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEeccccccccCCCEEeeeccccCCcccccCCCCeeE
Q 022299 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDI 139 (299)
Q Consensus 60 ~~~~v~~~~~g~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~GD~I~v~~~~~~~~~~~~~~~~~~I 139 (299)
++.+|+..+.++|||+||++.++.+||+.++++|++|+|+|||+++.++++.|++||.|.+......+....++..+++|
T Consensus 6 ~~~~v~~~~~g~RLd~~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~~~~~~~~~~~~~~~~i 85 (325)
T 1v9f_A 6 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDI 85 (325)
T ss_dssp ----------------------------------------------------------------------CCCCCCCCCE
T ss_pred EEEEECCccCCchHHHHHHhhccccCHHHHHHHHHCCCEEECCEEccCCCCEeCCCCEEEEeccccccccCCcccCCCeE
Confidence 44567788899999999999876899999999999999999999855899999999999997654332233355667899
Q ss_pred EEeCCcEEEEeCCCCceeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccccCC
Q 022299 140 VYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLD 219 (299)
Q Consensus 140 lyeD~~llvvnKPaGl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~VhRLD 219 (299)
||||++++|+|||+||+||+.+++...|+++.|..++.. .. ...++++|||||
T Consensus 86 lyed~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~--~~-------------------------~~~~~~~vhRLD 138 (325)
T 1v9f_A 86 VYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP--IA-------------------------DVPRAGIVHRLD 138 (325)
T ss_dssp EEECSSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGG--GG-------------------------GSGGGGBCCCCC
T ss_pred EEECCCEEEEECCCCCeEecCCCCCCccHHHHHHHHHHh--cC-------------------------CCCceeeecCCC
Confidence 999999999999999999998887778999999877531 00 123678999999
Q ss_pred CCCceEEEEEcCHHHHHHHHHHHhcCccceEEEEEEecccCCCCcEEEccceeCCCCCeeEEEc
Q 022299 220 KGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 283 (299)
Q Consensus 220 r~TSGLlL~Ak~~~a~~~l~~~f~~~~v~K~YlAlV~G~~~~~~g~I~~pi~~~~~~~~~~~~~ 283 (299)
++||||||||||..+++.|+.+|.++.++|+|+|+|.|.+.+ +|+|+.||.++..++.++.+.
T Consensus 139 ~~TSGlll~ak~~~~~~~l~~~~~~~~v~K~Y~a~v~G~~~~-~g~i~~~i~~~~~~~~~~~v~ 201 (325)
T 1v9f_A 139 KDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGTVDEPISRHPTKRTHMAVH 201 (325)
T ss_dssp TTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEEEESCCCC-CEEEECCEEECSSCTTCEEEC
T ss_pred CCCeeEEEEEcCHHHHHHHHHHHHcCCeeEEEEEEEeCCCCC-CCEEeeeeeECCCCCEEEEEC
Confidence 999999999999999999999999999999999999999977 899999999887666555554
No 2
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=99.98 E-value=1.3e-32 Score=248.12 Aligned_cols=144 Identities=20% Similarity=0.303 Sum_probs=122.4
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEeccccccccCCCEEeeeccccCCcccccCCCCeeEEEe-CCcEE
Q 022299 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYE-DDNVL 147 (299)
Q Consensus 69 ~g~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~GD~I~v~~~~~~~~~~~~~~~~~~Ilye-D~~ll 147 (299)
+++|||+||++. +.+||+.++++|++|+|+|||++++++++.|++||.|.+.. ..|+|| |++++
T Consensus 2 ~~~RLd~~L~~~-~~~SR~~~~~li~~G~V~VNG~~v~~~~~~v~~gD~I~v~~--------------~~i~~e~d~~~l 66 (234)
T 1ksk_A 2 SHMRLDKFIAQQ-LGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDG--------------NPLAQQHGPRYF 66 (234)
T ss_dssp CCEEHHHHHHHH-HTCCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEETT--------------EEECCCCCCCEE
T ss_pred CcccHHHHHHHc-CCCCHHHHHHHHHcCeEEECCEEeCCCCCCCCCCCEEEEeC--------------eEeecCCCCEEE
Confidence 578999999987 47999999999999999999999966899999999998852 148999 99999
Q ss_pred EEeCCCCceeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccccCCCCCceEEE
Q 022299 148 VVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 227 (299)
Q Consensus 148 vvnKPaGl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~VhRLDr~TSGLlL 227 (299)
|+|||+||+||+.++. ..|+++.|..++ ..++++|||||++||||||
T Consensus 67 vvnKP~G~~~~~~~~~-~~tl~~~l~~~~--------------------------------~~~~~~vhRLD~~TsGlll 113 (234)
T 1ksk_A 67 MLNKPQGYVCSTDDPD-HPTVLYFLDEPV--------------------------------AWKLHAAGRLDIDTTGLVL 113 (234)
T ss_dssp EEEECTTCBSSSSCSS-SCBGGGGCCCTT--------------------------------GGGCEESSCCCTTCEEEEE
T ss_pred EEECCCCCEeCCCCCC-CCcHHHHhhhhh--------------------------------cCCeeEcCCCCCCCeeEEE
Confidence 9999999999998774 668776543221 1257899999999999999
Q ss_pred EEcCHHHHHHHHHHHhcCccceEEEEEEecccCCC
Q 022299 228 VAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQS 262 (299)
Q Consensus 228 ~Ak~~~a~~~l~~~f~~~~v~K~YlAlV~G~~~~~ 262 (299)
||+|..++..|.. .++.++|+|+|+|.|.++++
T Consensus 114 ~ak~~~~~~~l~~--~~~~v~K~Y~a~v~g~~~~~ 146 (234)
T 1ksk_A 114 MTDDGQWSHRITS--PRHHCEKTYLVTLESPVADD 146 (234)
T ss_dssp EESCHHHHHHHHC--TTSCCCEEEEEEESSCCCTT
T ss_pred EEcCHHHHHHHhC--CCCCCCeEEEEEEccCCCHH
Confidence 9999887776654 57889999999999998654
No 3
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=99.97 E-value=8.2e-32 Score=244.32 Aligned_cols=143 Identities=22% Similarity=0.330 Sum_probs=118.7
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEeccccccccCCCEEeeeccccCCcccccCCCCeeEEEeCCc-EEE
Q 022299 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDN-VLV 148 (299)
Q Consensus 70 g~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~GD~I~v~~~~~~~~~~~~~~~~~~IlyeD~~-llv 148 (299)
.+|||+||++. +.+||+.++++|++|+|+|||++++++++.|++||.|.+.. ..|+|||++ ++|
T Consensus 2 ~~RLd~~L~~~-~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~--------------~~i~~ed~~~~lv 66 (243)
T 1vio_A 2 SLRLDKFIAEN-VGLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFED--------------ELLTWIEEGQYFM 66 (243)
T ss_dssp CEEHHHHHHHH-HTCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETT--------------EECCSSCCCCEEE
T ss_pred CccHHHHHHHc-CCCCHHHHHHHHHcCcEEECCEEeCCCCCCcCCCCEEEEec--------------cccccCCCCEEEE
Confidence 36999999987 47999999999999999999999966899999999887732 257999999 999
Q ss_pred EeCCCCceeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccccCCCCCceEEEE
Q 022299 149 VNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 228 (299)
Q Consensus 149 vnKPaGl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~VhRLDr~TSGLlL~ 228 (299)
+|||+||+||+.++. ..|+++.|..++ ..++++|||||++|||||||
T Consensus 67 vnKP~G~~~~~~~~~-~~tl~~~l~~~~--------------------------------~~~~~~vhRLD~~TsGlll~ 113 (243)
T 1vio_A 67 LNKPQGCVCSNDDGD-YPTIYQFFDYPL--------------------------------AGKLHSAGRLDVDTTGLVLL 113 (243)
T ss_dssp EEECTTCBSSCCC---CCBGGGGSCTTG--------------------------------GGGCEESSCCCTTCEEEEEE
T ss_pred EECCCCCEeCCCCCC-CCcHHHHHhHHh--------------------------------cCCEeEccCCCCCCeEEEEE
Confidence 999999999998764 567766543221 12578899999999999999
Q ss_pred EcCHHHHHHHHHHHhcCccceEEEEEEecccCCC
Q 022299 229 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQS 262 (299)
Q Consensus 229 Ak~~~a~~~l~~~f~~~~v~K~YlAlV~G~~~~~ 262 (299)
|+|..++..+.. .++.++|+|+|+|.|.++++
T Consensus 114 ak~~~~a~~l~~--~~~~v~K~Y~a~v~g~~~~~ 145 (243)
T 1vio_A 114 TDDGQWSHRITS--PKHHCEKTYLVTLADPVEEN 145 (243)
T ss_dssp ESCHHHHHHHHC--TTSCCCEEEEEEESSCCCTT
T ss_pred EECHHHHHHHhC--CCCCCCEEEEEEEeCCCCHH
Confidence 999876655543 57889999999999998654
No 4
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=99.97 E-value=1.9e-30 Score=241.31 Aligned_cols=144 Identities=25% Similarity=0.350 Sum_probs=122.6
Q ss_pred CccchHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEeccccccccCCCEEeeeccccCCcccccCCCCeeEEEeCCcEE
Q 022299 68 AGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVL 147 (299)
Q Consensus 68 ~~g~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~GD~I~v~~~~~~~~~~~~~~~~~~IlyeD~~ll 147 (299)
++++|||+||++. +.+||+.++++|++|+|+|||+++ ++++.|.+||.|.+......+ + .|||++||
T Consensus 4 ~~g~RLdk~La~~-g~~SR~~a~~lI~~G~V~VNG~~v-~~~~~V~~gD~I~v~~~~i~~-----~------~~ed~~~l 70 (290)
T 3dh3_A 4 DSSVRLNKYISES-GICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEP-----R------EAEDLVLI 70 (290)
T ss_dssp CCCEEHHHHHHTT-TSSCHHHHHHHHHTTCEEETTEEC-CTTCEECTTCCEEETTEEECC-----C------CGGGCCEE
T ss_pred ccchHHHHHHHhC-CCCCHHHHHHHHHCCCEEECCEEc-cCCcCcCCCCEEEeccccccc-----c------ccccceEE
Confidence 4689999999987 678999999999999999999999 799999999999997642211 1 37999999
Q ss_pred EEeCCCCceeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccccCCCCCceEEE
Q 022299 148 VVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 227 (299)
Q Consensus 148 vvnKPaGl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~VhRLDr~TSGLlL 227 (299)
|+|||+|++||+.+++ ..|+++.|.+ ..++++|||||++||||||
T Consensus 71 vvnKP~G~~~~~~~~~-~~tl~~~l~~----------------------------------~~~~~~VhRLD~dTSGLll 115 (290)
T 3dh3_A 71 ALNKPVGIVSTTEDGE-RDNIVDFVNH----------------------------------SKRVFPIGRLDKDSQGLIF 115 (290)
T ss_dssp EEEECTTCBCCCCSSC-TTBHHHHHTC----------------------------------SSCCEESSCCCTTCEEEEE
T ss_pred EEECCCccccCCCCCC-CCcHHHHhhc----------------------------------cCceeeeccCCCCCcceEE
Confidence 9999999999998765 5688877632 1367889999999999999
Q ss_pred EEcCHHHHHHHHHHHhcCccceEEEEEEecccCC
Q 022299 228 VAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQ 261 (299)
Q Consensus 228 ~Ak~~~a~~~l~~~f~~~~v~K~YlAlV~G~~~~ 261 (299)
||+|..++..|... .+.++|+|+|+|.|.+.+
T Consensus 116 la~d~~~~~~L~~~--~~~v~K~Y~a~V~G~~~~ 147 (290)
T 3dh3_A 116 LTNHGDLVNKILRA--GNDHEKEYLVTVDKPITE 147 (290)
T ss_dssp EESCTTHHHHHHCG--GGCCCEEEEEEESSCCCH
T ss_pred EcCCHHHHHHHHHh--hCCcCEEEEEEECCCCCH
Confidence 99998888888663 577999999999999864
No 5
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=99.94 E-value=2.7e-26 Score=204.80 Aligned_cols=105 Identities=31% Similarity=0.520 Sum_probs=94.2
Q ss_pred eeEEEeCCcEEEEeCCCCceeecCCC-CCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCcccc
Q 022299 137 LDIVYEDDNVLVVNKPAHMVVHPAPG-NATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIV 215 (299)
Q Consensus 137 ~~IlyeD~~llvvnKPaGl~v~~~~~-~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~V 215 (299)
++|||||++++|||||+|++||+..+ ....++++.|..++ ..+++|
T Consensus 12 ~~ilyed~~~lvvnKP~G~~~~~~~~~~~~~tl~~~l~~~~---------------------------------~~~~~v 58 (217)
T 2i82_A 12 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY---------------------------------PQAESV 58 (217)
T ss_dssp CCEEEECSSEEEEEECTTSBSSCCSSGGGCCBHHHHHHHHC---------------------------------TTCEES
T ss_pred ceEEEECCCEEEEECCCCCeEeCCCCCCchhHHHHHHHHHC---------------------------------CCCcee
Confidence 78999999999999999999998764 45678988887653 135689
Q ss_pred ccCCCCCceEEEEEcCHHHHHHHHHHHhcCccceEEEEEEecccCCCCcEEEccceeCC
Q 022299 216 HRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDP 274 (299)
Q Consensus 216 hRLDr~TSGLlL~Ak~~~a~~~l~~~f~~~~v~K~YlAlV~G~~~~~~g~I~~pi~~~~ 274 (299)
||||++||||||||||..+++.|+.+|+++.++|+|+|+|.|.+.+++|+|+.||.++.
T Consensus 59 hRLD~~TSGlll~ak~~~~~~~l~~~f~~~~v~K~Y~a~v~G~~~~~~g~i~~~l~~~~ 117 (217)
T 2i82_A 59 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 117 (217)
T ss_dssp SCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEEEESCCSSSEEEEECCEEECG
T ss_pred ecCCCCCeEEEEEEeCHHHHHHHHHHHHhCCeeEEEEEEEecccCCCCcEEecceeecC
Confidence 99999999999999999999999999999999999999999999888899999997754
No 6
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=99.93 E-value=2.2e-25 Score=200.32 Aligned_cols=106 Identities=31% Similarity=0.507 Sum_probs=92.8
Q ss_pred eEEEeCCcEEEEeCCCCceeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCcccccc
Q 022299 138 DIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 217 (299)
Q Consensus 138 ~IlyeD~~llvvnKPaGl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~VhR 217 (299)
+|+|||++++|||||+||+||+..+ ...++++.+...+. ...++++|||
T Consensus 3 ~Ilyed~~~lvvnKP~G~~~~~~~~-~~~~l~~~l~~~~~------------------------------~~~~~~~VhR 51 (228)
T 1v9k_A 3 VIMYEDDHILVLNKPSGTAVHGGSG-LSFGVIEGLRALRP------------------------------EARFLELVHR 51 (228)
T ss_dssp CEEEECSSEEEEEECTTSCSSCCSS-SBCCHHHHHHHHST------------------------------TCSCCEESSC
T ss_pred CEEEECCCEEEEECCCCCeEecCCC-hHHHHHHHHHHHcC------------------------------CCCccceEec
Confidence 6899999999999999999998765 45678887765431 1236788999
Q ss_pred CCCCCceEEEEEcCHHHHHHHHHHHhcCccceEEEEEEecccCCCCcEEEccceeCC
Q 022299 218 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDP 274 (299)
Q Consensus 218 LDr~TSGLlL~Ak~~~a~~~l~~~f~~~~v~K~YlAlV~G~~~~~~g~I~~pi~~~~ 274 (299)
||++||||||||+|..+++.|+.+|+++.++|+|+|+|.|.+.++.++|+.||.++.
T Consensus 52 LD~~TSGlll~ak~~~~~~~l~~~~~~~~v~K~Y~a~v~G~~~~~~~~i~~~l~~~~ 108 (228)
T 1v9k_A 52 LDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNI 108 (228)
T ss_dssp CCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEEEESCCCTTCCEECCCEEEEE
T ss_pred CCCCCeEEEEEEeCHHHHHHHHHHHHhCCeeEEEEEEEecccCCCCCEEeCceeccC
Confidence 999999999999999999999999999999999999999999988999999987653
No 7
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=99.89 E-value=3.8e-24 Score=186.94 Aligned_cols=98 Identities=20% Similarity=0.279 Sum_probs=77.6
Q ss_pred eeEEEeCCcEEEEeCCCCceeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccc
Q 022299 137 LDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVH 216 (299)
Q Consensus 137 ~~IlyeD~~llvvnKPaGl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~Vh 216 (299)
..|||||++++|+|||+||+||+.++....|+.+.|. ..++++||
T Consensus 4 ~~ilyed~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~-----------------------------------~~~~~~vh 48 (189)
T 2oml_A 4 RKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP-----------------------------------VQGVYAAG 48 (189)
T ss_dssp ----CCCCCEEEEEECTTBCSCSSCCTTCBCGGGTCC-----------------------------------CSSCEESS
T ss_pred cccccCCCeEEEEECCCCCEecCCCCCCCCCHHHHcC-----------------------------------CCCceECC
Confidence 3689999999999999999999988766667654321 12567899
Q ss_pred cCCCCCceEEEEEcCHHHHHHHHHHHhcCccceEEEEEEecccCCCC-cEEEccce
Q 022299 217 RLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSS-GRIEVPIS 271 (299)
Q Consensus 217 RLDr~TSGLlL~Ak~~~a~~~l~~~f~~~~v~K~YlAlV~G~~~~~~-g~I~~pi~ 271 (299)
|||++||||||||+|..+++.|+.+ .+.++|+|+|+|.|.+.++. +.|+.+|.
T Consensus 49 RLD~~TSGlll~ak~~~~~~~l~~~--~~~v~K~Y~a~v~G~~~~~~~~~i~~~i~ 102 (189)
T 2oml_A 49 RLDRDSEGLLVLTNNGALQARLTQP--GKRTGKIYYVQVEGIPTQDALEALRNGVT 102 (189)
T ss_dssp CCCTTCEEEEEEESCHHHHHHHHST--TSCCCEEEEEEEESCCCHHHHHHHHHCCE
T ss_pred CCCCCCeeEEEEEcCHHHHHHHhCc--cCCCcEEEEEEEcCCCCHHHHHHHHcCce
Confidence 9999999999999999999999987 68899999999999986544 34454543
No 8
>2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli}
Probab=99.88 E-value=8.4e-24 Score=188.91 Aligned_cols=99 Identities=20% Similarity=0.266 Sum_probs=76.2
Q ss_pred CCeeEEEeCCcEEEEeCCCCceeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccc
Q 022299 135 IPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGI 214 (299)
Q Consensus 135 ~~~~IlyeD~~llvvnKPaGl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 214 (299)
.++.|||||++++|||||+|++||+.++....|+.+.|. ..++++
T Consensus 30 ~~~~Ilyed~~~lvvnKP~Gl~~~~~~~~~~~tl~~~l~-----------------------------------~~~~~~ 74 (217)
T 2olw_A 30 TRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP-----------------------------------VQGVYA 74 (217)
T ss_dssp -------CCCCEEEEEECTTBCSCSSCCTTSBCGGGTCC-----------------------------------CCSCEE
T ss_pred ccCceEeeCCcEEEEECCCCCEeccCCCCCCccHHHHhC-----------------------------------cCCceE
Confidence 346899999999999999999999988766667654321 125678
Q ss_pred cccCCCCCceEEEEEcCHHHHHHHHHHHhcCccceEEEEEEecccCCCC-cEEEccc
Q 022299 215 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSS-GRIEVPI 270 (299)
Q Consensus 215 VhRLDr~TSGLlL~Ak~~~a~~~l~~~f~~~~v~K~YlAlV~G~~~~~~-g~I~~pi 270 (299)
|||||++||||||||+|..+++.|+.+ .+.++|+|+|+|.|.+.++. +.|+.+|
T Consensus 75 VhRLDr~TSGllllAk~~~~~~~L~~~--~~~v~K~Y~A~V~G~~~~~~~~~i~~~i 129 (217)
T 2olw_A 75 AGRLDRDSEGLLVLTNNGALQARLTQP--GKRTGKIYYVQVEGIPTQDALEALRNGV 129 (217)
T ss_dssp SSCCCTTCEEEEEEESCHHHHHHHHCT--TCCCCEEEEEEEESCCCHHHHHHHHHCC
T ss_pred CCCCCCCCeeEEEEEcCHHHHHHHHcc--cccCCEEEEEEEccCCCHHHHHHHhCCE
Confidence 999999999999999999999999986 57899999999999987554 3455555
No 9
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=99.73 E-value=2.9e-18 Score=154.90 Aligned_cols=82 Identities=22% Similarity=0.299 Sum_probs=68.3
Q ss_pred CCcEEEEeCCCCceeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccccCCCCC
Q 022299 143 DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGT 222 (299)
Q Consensus 143 D~~llvvnKPaGl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~VhRLDr~T 222 (299)
++.|||+|||+|++|++.+. ...|+++.|.. ..++++|||||++|
T Consensus 13 ~~~~lvlnKPaG~vs~~~~~-~~~tv~dll~~----------------------------------~~rl~~VgRLD~dT 57 (237)
T 2gml_A 13 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH----------------------------------SKRVFPIGRLDKDS 57 (237)
T ss_dssp CCCEEEEEECTTCBCCSSSS-CSSBHHHHSCC----------------------------------SSCCEEESCCCTTC
T ss_pred CCEEEEEECCCCCEeCCCCC-CCCCHHHHhhc----------------------------------cCCeeEecCCCCCC
Confidence 46799999999999998766 46688775421 13578999999999
Q ss_pred ceEEEEEcCHHHHHHHHHHHhcCccceEEEEEEecccCC
Q 022299 223 SGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQ 261 (299)
Q Consensus 223 SGLlL~Ak~~~a~~~l~~~f~~~~v~K~YlAlV~G~~~~ 261 (299)
|||||||+|..++..|... .+.|+|+|+|+|.|.+.+
T Consensus 58 SGLLLlT~dg~~a~~L~~p--~~~v~K~Y~a~V~G~~~~ 94 (237)
T 2gml_A 58 QGLIFLTNHGDLVNKILRA--GNDHEKEYLVTVDKPITE 94 (237)
T ss_dssp EEEEEEESCHHHHHHHHHH--HHHSCEEEEEEESSCCCH
T ss_pred eeEEEEEcCHHHHHHHhCc--cCCCCEEEEEEEcccCCH
Confidence 9999999999988888763 577999999999999864
No 10
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=98.78 E-value=5.9e-10 Score=85.88 Aligned_cols=75 Identities=19% Similarity=0.160 Sum_probs=56.7
Q ss_pred chHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEeccccccccCCCEEeeeccccCCcc-c-------ccCCCCeeEEEe
Q 022299 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR-A-------EAEDIPLDIVYE 142 (299)
Q Consensus 71 ~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~GD~I~v~~~~~~~~~-~-------~~~~~~~~Ilye 142 (299)
+|||+||++.....||+.++++|++|.|+|||+++ ++++.|++||.|.+...+..... . .+....+.++||
T Consensus 1 ~RLD~~L~~~~~~~sR~~~~~li~~G~V~VNg~~~-~~~~~v~~gd~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~lye 79 (92)
T 2k6p_A 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCA-KASKEVKAGDTISLHYLKGIEEYTILQIPALKNVPRKDTHLYIA 79 (92)
T ss_dssp CBHHHHSTTTTSCCCCCSSCCHHHHTCCEETTEEC-CTTCBCCTTCEEEECCSSCCEEEEECCCCCCSCCCSSSTTSSEE
T ss_pred ChHHHHHHHCCCCCCHHHHHHHHHCCcEEECCEEc-CCCCCcCCCCEEEEEeCCceEEEEEeccccccCCCHHHHHHHHH
Confidence 58999999864335999999999999999999998 79999999999999764322110 0 012234788999
Q ss_pred CCcE
Q 022299 143 DDNV 146 (299)
Q Consensus 143 D~~l 146 (299)
|.++
T Consensus 80 d~~~ 83 (92)
T 2k6p_A 80 PKTK 83 (92)
T ss_dssp ECCC
T ss_pred hcCC
Confidence 8763
No 11
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=98.62 E-value=7e-08 Score=79.51 Aligned_cols=57 Identities=28% Similarity=0.263 Sum_probs=50.0
Q ss_pred CCCccchHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEeccccccccCCCEEeeecc
Q 022299 66 TKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123 (299)
Q Consensus 66 ~~~~g~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~GD~I~v~~~ 123 (299)
..++++|||+||.......||+.++++|.+|.|+|||+.+ ++++.|++||.|.|...
T Consensus 4 ~~~~~~RLDk~L~~~~~~~SRs~a~~li~~G~V~VNG~~v-k~s~~V~~GD~I~I~~~ 60 (133)
T 1dm9_A 4 KPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQG 60 (133)
T ss_dssp -CTTCCBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEEC-CTTCBCCTTCEEEEEET
T ss_pred ccccchhHHHHHHHCCCCCCHHHHHHHHHCCcEEECCEEc-CCCCEeCCCCEEEEEeC
Confidence 3467899999999864457999999999999999999998 89999999999999764
No 12
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=98.49 E-value=5.3e-08 Score=86.13 Aligned_cols=81 Identities=21% Similarity=0.170 Sum_probs=61.7
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEeccccccccCCCEEeeeccccCCcccccCCCCeeEEEeCCcEEE
Q 022299 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLV 148 (299)
Q Consensus 69 ~g~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~GD~I~v~~~~~~~~~~~~~~~~~~IlyeD~~llv 148 (299)
.++|||+||.+.....||+.++++|.+|.|.|||++++++++.|++||.|.|......... -..++.
T Consensus 97 le~RLD~~L~~~g~~~SR~~arqLI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~~~r~~~~-------------~~~~l~ 163 (209)
T 2vqe_D 97 LESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLEL-------------IRQNLE 163 (209)
T ss_dssp HHTBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECGGGTTCHH-------------HHHHHH
T ss_pred HHHHHHHHHHHhcCcCCHHHHHHHHHCCCEEECCEEeCcCCcCcCCCCEEEEcCcccchHH-------------HHHHHH
Confidence 4689999999875467999999999999999999999789999999999999764221110 012233
Q ss_pred Ee---CCCCceeecCCC
Q 022299 149 VN---KPAHMVVHPAPG 162 (299)
Q Consensus 149 vn---KPaGl~v~~~~~ 162 (299)
.| ||+|.++...+.
T Consensus 164 ~~~~~kp~g~l~~d~~~ 180 (209)
T 2vqe_D 164 AMKGRKVGPWLSLDVEG 180 (209)
T ss_dssp HTTTCCCCTTCCEETTT
T ss_pred hcCCCCCCCeEEEeccc
Confidence 34 899998875543
No 13
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=98.44 E-value=3.3e-08 Score=74.04 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=47.7
Q ss_pred CccchHHHHHHhccCCC-CHHHHHHHHHCCcEEECCEEeccccccccCCCEEeeec
Q 022299 68 AGKLRLDAWISSRIDGI-SRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (299)
Q Consensus 68 ~~g~RLdk~L~~~~~~~-Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~GD~I~v~~ 122 (299)
.+++|||+||++. +.+ ||+.++++|++|+|+|||++++++++.|.+||.|.+..
T Consensus 18 ~~~~RLdk~L~~~-g~~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~gd~I~v~~ 72 (79)
T 1p9k_A 18 HPHVELCDLLKLE-GWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 72 (79)
T ss_dssp CSCCCHHHHHHHH-TSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEETT
T ss_pred CCCchHHHHHHHC-CCCCCHHHHHHHHHCCEEEECCEEecCCCCCCCCCCEEEECC
Confidence 4568999999987 433 99999999999999999999888999999999998854
No 14
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=98.36 E-value=5.4e-07 Score=76.38 Aligned_cols=82 Identities=15% Similarity=0.105 Sum_probs=61.3
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEeccccccccCCCEEeeeccccCCcccccCCCCeeEEEeCCcEEE
Q 022299 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLV 148 (299)
Q Consensus 69 ~g~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~GD~I~v~~~~~~~~~~~~~~~~~~IlyeD~~llv 148 (299)
-++|||++|.+.....||+.++++|.+|.|.|||++++++++.|.+||.|.+......... +.-.. +.+
T Consensus 49 le~RLD~~L~~~g~~~SR~~ar~lI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~~~~~~~k-------l~~al--~~~-- 117 (159)
T 1c05_A 49 LESRLDNLVYRLGLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVREKSRNLQV-------IKEAL--EAN-- 117 (159)
T ss_dssp HHHBHHHHHHHTTSCSSHHHHHHHHHTTCEEETTEECCCSSCBCCTTCEEEECGGGSSCHH-------HHHHH--HTC--
T ss_pred HHHHHHHHHHHcCCcCCHHHHHHHHHCCCEEECCEEeCcCCcEeCCCCEEEEeCceehHHH-------HHHHH--HHh--
Confidence 4589999999875567999999999999999999999889999999999999764221100 00000 012
Q ss_pred EeCCCCceeecCCC
Q 022299 149 VNKPAHMVVHPAPG 162 (299)
Q Consensus 149 vnKPaGl~v~~~~~ 162 (299)
+||+|.++...+.
T Consensus 118 -~~~~g~v~~d~~~ 130 (159)
T 1c05_A 118 -NYIPDYLSFDPEK 130 (159)
T ss_dssp -CCCCSSEEEETTT
T ss_pred -CCCCCeEEEecCC
Confidence 8999999885443
No 15
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=8.1e-07 Score=65.37 Aligned_cols=51 Identities=18% Similarity=0.123 Sum_probs=44.8
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEeccccccccC--CCEEee
Q 022299 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKG--GDMVNC 120 (299)
Q Consensus 70 g~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~--GD~I~v 120 (299)
.+|||.+|.+..-.-||+.++++|.+|+|+|||++++++++.|.+ +|.|.+
T Consensus 7 ~~RLD~~l~~~gla~SR~~A~~lI~~G~V~Vng~~v~kps~~V~~~~~d~I~~ 59 (71)
T 2cqj_A 7 GRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTW 59 (71)
T ss_dssp EEEHHHHHHHTTCSSSHHHHHHHHHTTCEEETTBCCCCTTCEEEHHHHTTEEE
T ss_pred HHHHHHHHHHhCCcCCHHHHHHHHHCCcEEECCEEECCCCCCCCCCCCcEEEE
Confidence 369999999874334999999999999999999999999999998 677764
No 16
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=98.15 E-value=5e-07 Score=79.49 Aligned_cols=55 Identities=25% Similarity=0.245 Sum_probs=49.3
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEeccccccccCCCEEeeecc
Q 022299 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123 (299)
Q Consensus 69 ~g~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~GD~I~v~~~ 123 (299)
.++|||+||.......||+.++++|..|.|.|||+.++.+++.|++||+|.|...
T Consensus 93 le~RLD~~L~r~g~~~SR~~ArqLI~~G~V~VNG~~V~~ps~~Vk~GD~I~V~~~ 147 (205)
T 3r8n_D 93 LEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREK 147 (205)
T ss_dssp HHTBTTHHHHTTSSCSSHHHHHHHHHTTCCBSSSSBCCCTTCBCCTTBCCBCCSS
T ss_pred hHhhHHHHHHHhcchhHHHHHHHHHHCCCEEECCEEEccCCcCcCCCCEEEecCc
Confidence 4589999999865467999999999999999999999889999999999998654
No 17
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=98.05 E-value=2.9e-06 Score=78.49 Aligned_cols=55 Identities=16% Similarity=0.075 Sum_probs=49.4
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHCCcEEECC-E-EeccccccccCCCEEeeecc
Q 022299 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSING-Q-VVSKVSHNVKGGDMVNCTIS 123 (299)
Q Consensus 69 ~g~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNG-k-~v~~~~~~l~~GD~I~v~~~ 123 (299)
.++|||+||.+.....||+.++++|++|+|+||| + +++++++.|.+||.|.+...
T Consensus 5 ~~~RLD~~L~~~g~~~SR~~a~~lI~~G~V~Vng~~~~v~kp~~~V~~~d~I~v~g~ 61 (291)
T 3hp7_A 5 PKERVDVLAYKQGLFETREQAKRGVMAGLVVNVINGERYDKPGEKIDDGTELKLKGE 61 (291)
T ss_dssp CEEEHHHHHHHTTSSSSHHHHHHHHHTTCEEETTTCCBCCCTTCEEETTCCEEETTC
T ss_pred chhhHHHHHHHcCCcccHHHHHHHHHCCeEEECCeEEEEccCCCCCCCCCEEEEccc
Confidence 4689999999876567999999999999999999 8 78899999999999998754
No 18
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=98.05 E-value=1.8e-06 Score=75.73 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=48.1
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEeccccccccCCCEEeeecc
Q 022299 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123 (299)
Q Consensus 70 g~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~GD~I~v~~~ 123 (299)
.+|||.||.......||+.++++|..|+|.|||+.++.+++.|++||.|.|...
T Consensus 88 e~RLD~~L~r~g~a~SR~~ArqLI~~G~V~VNG~~V~~pS~~V~~gD~I~V~~~ 141 (201)
T 3bbn_D 88 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDTIMARDE 141 (201)
T ss_dssp HSBTTTTTTTTTSSSSSHHHHHHHHTTCEEETTEECCCTTCBCCTTEEEEECSS
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHhCCcEEeCCEEEeecceecCCCCEEEEccc
Confidence 478999998774456999999999999999999999889999999999999754
No 19
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.79 E-value=1.1e-05 Score=69.58 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=46.5
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEeccccccccCC--CEEeeec
Q 022299 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGG--DMVNCTI 122 (299)
Q Consensus 70 g~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~G--D~I~v~~ 122 (299)
.+|||.||....-.-||+.++++|.+|+|.|||++|+++++.|.+| |.|.+..
T Consensus 102 e~RLD~~L~~~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~~eD~I~v~~ 156 (180)
T 3j20_D 102 ERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYAR 156 (180)
T ss_dssp HTSHHHHHHHHTSSSSHHHHHHHHHHTCCEESSSBCCCSSCCCCTGGGGCEECSS
T ss_pred hhhhhheeecCcccCcHHHHHHHHHcCCeEECCEEeCCCCcccCCCCCCEEEEeC
Confidence 4789999987633349999999999999999999999999999999 8898843
No 20
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=97.74 E-value=1.6e-05 Score=68.63 Aligned_cols=52 Identities=15% Similarity=0.068 Sum_probs=44.9
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEeccccccccCCCEEeee
Q 022299 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121 (299)
Q Consensus 70 g~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~GD~I~v~ 121 (299)
.+|||.+|....-..||+.++++|.+|+|.|||++|+++++.|.+||.+.|.
T Consensus 106 e~RLD~vL~~~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~d~~~I~ 157 (181)
T 2xzm_D 106 ERRLQTRVFKLNLANSIHHSRVLIRQRHIKVGKNLVNVPSFMVRTDSEKSID 157 (181)
T ss_dssp TTBHHHHHHHTTCSSSTTHHHHHTTTTCCEETTEECCCSCCBCCSTTSSCEE
T ss_pred ccchhHHHHhccccCCHHHHHHHHHCCEEEECCEEECCCCcCCCCCCceEEE
Confidence 4799999987743449999999999999999999999999999999854444
No 21
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=97.41 E-value=6.1e-05 Score=65.68 Aligned_cols=51 Identities=16% Similarity=0.089 Sum_probs=44.2
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEeccccccccCCC--EEee
Q 022299 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD--MVNC 120 (299)
Q Consensus 70 g~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~GD--~I~v 120 (299)
.+|||.+|...--.-||+.++++|.+|+|.|||++|+++++.|.+|+ .|.+
T Consensus 106 e~RLD~~L~r~G~a~Sr~~ArqLI~~GhV~VNG~~V~~Ps~~V~~g~ed~I~~ 158 (197)
T 3u5c_J 106 ERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDF 158 (197)
T ss_dssp TTSHHHHHHHSSTTSSHHHHHHHHHTSCCBSSSCBCCCTTCCCCSTTGGGCBC
T ss_pred HHHHHHHHHHccccCCHHHHHHHHHcCCEEECCEEeCCCccccCCCCccEEEE
Confidence 37899999987433499999999999999999999999999999995 5554
No 22
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=96.88 E-value=0.00098 Score=62.39 Aligned_cols=72 Identities=21% Similarity=0.337 Sum_probs=54.7
Q ss_pred CcEEEEeCCCCceeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccccCCCCCc
Q 022299 144 DNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 223 (299)
Q Consensus 144 ~~llvvnKPaGl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~VhRLDr~TS 223 (299)
+.+|+||||+||-+| .+++.+++.+. ..+.+..+.||...|
T Consensus 25 ~Gil~vdKP~G~TS~--------dvv~~vr~~l~-------------------------------~kKvGH~GTLDP~At 65 (327)
T 1k8w_A 25 NGVLLLDKPQGMSSN--------DALQKVKRIYN-------------------------------ANRAGHTGALDPLAT 65 (327)
T ss_dssp CEEEEEEECTTCCHH--------HHHHHHHHHTT-------------------------------CSCEEESSCCCTTCE
T ss_pred CeEEEEECCCCCCHH--------HHHHHHHHhhc-------------------------------cceeccCCCCCCCCe
Confidence 469999999998865 46777777653 246778999999999
Q ss_pred eEEEEEcCHHHHHHHHHHHhcCccceEEEEEEe-cc
Q 022299 224 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS-GV 258 (299)
Q Consensus 224 GLlL~Ak~~~a~~~l~~~f~~~~v~K~YlAlV~-G~ 258 (299)
|+|+++-.+.. ++.+.+.+ -.|+|.|.+. |.
T Consensus 66 GvL~i~~G~aT--Kl~~~l~~--~~K~Y~a~~~lG~ 97 (327)
T 1k8w_A 66 GMLPICLGEAT--KFSQYLLD--SDKRYRVIARLGQ 97 (327)
T ss_dssp EEEEEEEGGGG--GGTHHHHT--SCEEEEEEEEETE
T ss_pred eEEEEEECHHH--hHHHHhcc--CCcEEEEEEEECC
Confidence 99999998642 24455543 3899999986 54
No 23
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=96.82 E-value=0.00085 Score=62.35 Aligned_cols=72 Identities=22% Similarity=0.370 Sum_probs=54.9
Q ss_pred CcEEEEeCCCCceeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccccCCCCCc
Q 022299 144 DNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 223 (299)
Q Consensus 144 ~~llvvnKPaGl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~VhRLDr~TS 223 (299)
+.+|++|||+|+-+| .+++.+.+.+. ..+.+..+.||-..|
T Consensus 3 ~Gil~vdKP~G~TS~--------~vv~~vrr~l~-------------------------------~kKvGH~GTLDP~At 43 (309)
T 1r3e_A 3 HGILVAYKPKGPTSH--------DVVDEVRKKLK-------------------------------TRKVGHGGTLDPFAC 43 (309)
T ss_dssp CEEEEEEECSSSCHH--------HHHHHHHHHTT-------------------------------CSCEEESSCCCTTCE
T ss_pred CeEEEEECCCCCCHH--------HHHHHHHHHhc-------------------------------cceecccccCCCCcc
Confidence 469999999998876 47777877653 236778999999999
Q ss_pred eEEEEEcCHHHHHHHHHHHhcCccceEEEEEEe-cc
Q 022299 224 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS-GV 258 (299)
Q Consensus 224 GLlL~Ak~~~a~~~l~~~f~~~~v~K~YlAlV~-G~ 258 (299)
|+|+++-.+. .++.+.+.+ -.|+|.|.+. |.
T Consensus 44 GvL~i~iG~a--TKl~~~l~~--~~K~Y~a~~~lG~ 75 (309)
T 1r3e_A 44 GVLIIGVNQG--TRILEFYKD--LKKVYWVKMRLGL 75 (309)
T ss_dssp EEEEEEEGGG--GGGGGGGTT--SCEEEEEEEEETE
T ss_pred eeEEEEECHH--HhHHHHhCc--cCcEEEEEEEECC
Confidence 9999999863 344444443 4899999986 53
No 24
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=96.79 E-value=0.00092 Score=62.85 Aligned_cols=71 Identities=23% Similarity=0.271 Sum_probs=54.4
Q ss_pred CCcEEEEeCCCCceeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccccCCCCC
Q 022299 143 DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGT 222 (299)
Q Consensus 143 D~~llvvnKPaGl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~VhRLDr~T 222 (299)
.+.+|+||||+|+-+| .+++.+.+.+. ..+.+..+.||-..
T Consensus 45 ~~Gil~vdKP~g~tS~--------~vv~~vr~~~~-------------------------------~~KvGH~GTLDP~a 85 (334)
T 2aus_C 45 QYGVINLDKPPGPTSH--------EVVAWIKRILN-------------------------------LEKAGHGGTLDPKV 85 (334)
T ss_dssp HTEEEEEEECSSSCHH--------HHHHHHHHHTT-------------------------------CSCEEESSCCCTTC
T ss_pred cCcEEEEECCCCCCHH--------HHHHHHHHHhC-------------------------------cceeccccccCCcc
Confidence 4679999999999766 47777777653 23677899999999
Q ss_pred ceEEEEEcCHHHHHHHHHHHhcCccceEEEEEEe
Q 022299 223 SGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS 256 (299)
Q Consensus 223 SGLlL~Ak~~~a~~~l~~~f~~~~v~K~YlAlV~ 256 (299)
||+|+++-.+. . ++.+.+.+ ..|+|.|.+.
T Consensus 86 tGvL~v~~g~a-T-k~~~~l~~--~~K~Y~~~~~ 115 (334)
T 2aus_C 86 SGVLPVALERA-T-RVVQALLP--AGKEYVALMH 115 (334)
T ss_dssp EEEEEEEEGGG-G-GGGGGGTT--CCEEEEEEEE
T ss_pred ceeEEEEeChh-h-hhHHHhcc--cCcEEEEEEE
Confidence 99999999753 2 44444443 5899999986
No 25
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=96.78 E-value=9.7e-06 Score=70.64 Aligned_cols=53 Identities=19% Similarity=0.129 Sum_probs=47.1
Q ss_pred cchHHHHHHhccCCC-CHHHHHHHHHCCcEEECCEEeccccccccCCCEEeeecc
Q 022299 70 KLRLDAWISSRIDGI-SRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123 (299)
Q Consensus 70 g~RLdk~L~~~~~~~-Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~GD~I~v~~~ 123 (299)
.+|||.+|... +.. ||+.++++|..|+|.|||++|+++++.|.+||++.|.+.
T Consensus 108 e~RLD~~L~r~-G~a~SR~~ArqlI~~GhV~VNG~~V~~Ps~~V~~gde~~I~~~ 161 (195)
T 3iz6_C 108 ARRLQTLVFKA-GMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFS 161 (195)
T ss_dssp TSCCCSSCCCC-CCHHHHSCTTSHHHHHSTTTSCCCCCCCCCCCSSSCSSSSCSS
T ss_pred HhhhhHHHHhc-cccCCHHHHHHHHHcCCEEECCEEeCCCCcCcCCCCEEEEEec
Confidence 47999999876 344 999999999999999999999999999999999888654
No 26
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.73 E-value=0.0031 Score=56.55 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=49.2
Q ss_pred CccchHHHHHHhccCC-CCHHHHHHHHHCCcEEECCEEeccccccccCCCEEeeec
Q 022299 68 AGKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (299)
Q Consensus 68 ~~g~RLdk~L~~~~~~-~Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~GD~I~v~~ 122 (299)
.++..|.-||+..++. .+++++++.+.+|.|+|||++++.+++.+..+|+|.+..
T Consensus 40 ~~~lPL~i~LRdrLgyA~t~rEar~Iv~~~~I~VdGKvr~d~~ypvG~mDVIsI~k 95 (243)
T 3j20_E 40 RTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPE 95 (243)
T ss_dssp TTCEEHHHHHHTTSCCCSSHHHHHHHHHHCSCEETTEECCCSSCEECTTCEEEETT
T ss_pred ccceeehhhhhhhhccccCHHHHHHHHHCCcEEECCEEeccccCCcccceEEEecc
Confidence 3567799999998864 689999999999999999999999999999999999854
No 27
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Probab=96.67 E-value=0.0012 Score=61.51 Aligned_cols=73 Identities=22% Similarity=0.356 Sum_probs=55.4
Q ss_pred CCcEEEEeCCCCceeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccccCCCCC
Q 022299 143 DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGT 222 (299)
Q Consensus 143 D~~llvvnKPaGl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~VhRLDr~T 222 (299)
.+.+|++|||.|+-+| .+++.+++.+. ..+.+..+.||-..
T Consensus 5 ~~Gil~vdKP~G~TS~--------dvv~~vrr~l~-------------------------------~kKvGH~GTLDP~A 45 (316)
T 1sgv_A 5 GPGIVVIDKPAGMTSH--------DVVGRCRRIFA-------------------------------TRRVGHAGTLDPMA 45 (316)
T ss_dssp CSEEEEEEECTTCCHH--------HHHHHHHHHTT-------------------------------CSCEEESSCCCTTC
T ss_pred CCeEEEEECCCCCCHH--------HHHHHHHHHhc-------------------------------cccccccccCCCCC
Confidence 3579999999998876 47788877653 24677899999999
Q ss_pred ceEEEEEcCHHHHHHHHHHHhcCccceEEEEEEe-cc
Q 022299 223 SGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS-GV 258 (299)
Q Consensus 223 SGLlL~Ak~~~a~~~l~~~f~~~~v~K~YlAlV~-G~ 258 (299)
||||+++-.+. .++.+.+.+ -.|+|.|.+. |.
T Consensus 46 tGvL~i~iG~a--TKl~~~l~~--~~K~Y~~~~~lG~ 78 (316)
T 1sgv_A 46 TGVLVIGIERA--TKILGLLTA--APKSYAATIRLGQ 78 (316)
T ss_dssp EEEEEEEEGGG--GGGGGGTTT--SCEEEEEEEEETE
T ss_pred eEEEEEEECHH--HhHHHHhCc--CCcEEEEEEEECC
Confidence 99999999763 234444432 5999999986 53
No 28
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=96.52 E-value=0.0017 Score=61.55 Aligned_cols=71 Identities=21% Similarity=0.265 Sum_probs=54.6
Q ss_pred CCcEEEEeCCCCceeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccccCCCCC
Q 022299 143 DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGT 222 (299)
Q Consensus 143 D~~llvvnKPaGl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~VhRLDr~T 222 (299)
.+.+|+||||+|+-+| .+++.+.+.+. ..+.+..+-||-..
T Consensus 65 ~~Gil~vdKP~G~TS~--------~vv~~vr~~l~-------------------------------~~KvGH~GTLDP~A 105 (357)
T 2apo_A 65 KYGVVVVDKPRGPTSH--------EVSTWVKKILN-------------------------------LDKAGHGGTLDPKV 105 (357)
T ss_dssp HTEEEEEEECSSSCHH--------HHHHHHHHHTT-------------------------------CSCEEESSCCCTTC
T ss_pred cCcEEEEECCCCCCHH--------HHHHHHHHHhC-------------------------------ccccccccccCCCc
Confidence 4679999999998876 47777777653 23677899999999
Q ss_pred ceEEEEEcCHHHHHHHHHHHhcCccceEEEEEEe
Q 022299 223 SGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS 256 (299)
Q Consensus 223 SGLlL~Ak~~~a~~~l~~~f~~~~v~K~YlAlV~ 256 (299)
||+|+++-.+. . ++.+.+.+ ..|+|.|.+.
T Consensus 106 tGvL~v~~G~a-T-k~~~~l~~--~~K~Y~~~~~ 135 (357)
T 2apo_A 106 TGVLPVALERA-T-KTIPMWHI--PPKEYVCLMH 135 (357)
T ss_dssp EEEEEEEEGGG-G-GGGGGTTS--SCEEEEEEEE
T ss_pred eeEEEEEeCHH-H-hHHHHhcc--CCcEEEEEEE
Confidence 99999999753 3 44444443 6899999986
No 29
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=96.35 E-value=0.0052 Score=54.01 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=47.2
Q ss_pred CccchHHHHHHhccCC-CCHHHHHHHHHCCcEEECCEEeccccccccCCCEEee
Q 022299 68 AGKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120 (299)
Q Consensus 68 ~~g~RLdk~L~~~~~~-~Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~GD~I~v 120 (299)
.++..|--||+..++. .+++++++.+.+|.|+|||++++.+++.+..+|+|.+
T Consensus 5 ~eslPL~i~LRdrLgyA~t~rEarkIv~~~~I~VDGKvr~d~~ypvG~mDVIsI 58 (213)
T 3kbg_A 5 DQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI 58 (213)
T ss_dssp CSCEEHHHHHHHHHHTTTCGGGHHHHHHTTCEEETTEECCCTTCEECTTCEEEE
T ss_pred hhceeeHHHHhhhhcccccHHHHHHHHHCCCEEECCEEecccCCCccceeEEEe
Confidence 3456788899887763 6899999999999999999999999999999999999
No 30
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=96.26 E-value=0.0058 Score=58.60 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=54.5
Q ss_pred CCcEEEEeCCCCceeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccccCCCCC
Q 022299 143 DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGT 222 (299)
Q Consensus 143 D~~llvvnKPaGl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~VhRLDr~T 222 (299)
.+.+|++|||+|+-+| .++..+++.+. ..+.+..+.||-..
T Consensus 58 ~~Gil~ldKP~G~TS~--------dvv~~vrr~l~-------------------------------~kKvGH~GTLDP~A 98 (400)
T 3u28_A 58 SSGVINLDKPSNPSSH--------EVVAWIKRILR-------------------------------CEKTGHSGTLDPKV 98 (400)
T ss_dssp HTEEEEEEECSSSCHH--------HHHHHHHHHHT-------------------------------CSCEEESSCCCTTC
T ss_pred cCcEEEEECCCCCCHH--------HHHHHHHHHhC-------------------------------cCcccccCCCCCCC
Confidence 4689999999998876 46777777653 24677899999999
Q ss_pred ceEEEEEcCHHHHHHHHHHHhcCccceEEEEEEe-cc
Q 022299 223 SGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS-GV 258 (299)
Q Consensus 223 SGLlL~Ak~~~a~~~l~~~f~~~~v~K~YlAlV~-G~ 258 (299)
||||+++-.+. . ++...+.. -.|+|.|.+. |.
T Consensus 99 tGvL~v~iG~a-T-Kl~~~l~~--~~K~Y~a~~~lG~ 131 (400)
T 3u28_A 99 TGCLIVCIDRA-T-RLVKSQQG--AGKEYVCIVRLHD 131 (400)
T ss_dssp EEEEEEEEGGG-G-GGHHHHHH--SCEEEEEEEEESS
T ss_pred eEEEEEEEChH-H-hHhHHhcC--CCcEEEEEEEeCC
Confidence 99999998752 2 23333332 5899999985 54
No 31
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=93.68 E-value=0.073 Score=48.15 Aligned_cols=54 Identities=19% Similarity=0.127 Sum_probs=43.5
Q ss_pred ccchHHHHHHhccCC-CCHHHHHHHHHCCcEEECCEEeccccccccCCCEEeeec
Q 022299 69 GKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (299)
Q Consensus 69 ~g~RLdk~L~~~~~~-~Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~GD~I~v~~ 122 (299)
++..|.-||+..+.. .+.+++++.|.+|.|+|||++.+...+.+-.-|+|.+..
T Consensus 40 eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~k 94 (265)
T 3iz6_D 40 ECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPK 94 (265)
T ss_dssp ---CHHHHHHHHHTTSSCSSSTHHHHHTTCCEETTEECCCTTCCCCTTCEEECCS
T ss_pred hheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCcEEEEEEEcC
Confidence 456688899988764 577899999999999999999987777777779999854
No 32
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=93.58 E-value=0.16 Score=45.73 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=46.0
Q ss_pred CccchHHHHHHhccCC-CCHHHHHHHHHC--CcEEECCEEeccccccccCCCEEeeec
Q 022299 68 AGKLRLDAWISSRIDG-ISRARVQSSIRS--GLVSINGQVVSKVSHNVKGGDMVNCTI 122 (299)
Q Consensus 68 ~~g~RLdk~L~~~~~~-~Sr~~~~~lI~~--G~V~vNGk~v~~~~~~l~~GD~I~v~~ 122 (299)
.++..|--||+..+.. .+.+++++.|.+ |.|+|||++.+...+.+-.-|+|.+..
T Consensus 39 ~eslPL~i~LRd~LkyA~t~rEak~Il~q~~~~VkVDGkvr~D~~~PvG~MDVIsI~k 96 (260)
T 2xzm_W 39 RESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRIEK 96 (260)
T ss_dssp SSCEEHHHHHTTTTCSCCSHHHHHHHTTSTTCCEEETTEECCCTTCEECTTCEEEEGG
T ss_pred ceeehhHhhhhhhhccccchhHHHHHHhccCCeEEECCEEeccCCCCCcEEEEEeEcC
Confidence 3456799999988863 688999999999 999999999877777777779998753
No 33
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=91.57 E-value=0.075 Score=47.97 Aligned_cols=54 Identities=15% Similarity=0.221 Sum_probs=46.1
Q ss_pred ccchHHHHHHhccCC-CCHHHHHHHHHCCcEEECCEEeccccccccCCCEEeeec
Q 022299 69 GKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (299)
Q Consensus 69 ~g~RLdk~L~~~~~~-~Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~GD~I~v~~ 122 (299)
++..|.-||+..+.. .+.+++++.+.+|.|+|||++.+...+.+-.-|+|.+..
T Consensus 40 eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~k 94 (261)
T 3u5c_E 40 ESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLDA 94 (261)
T ss_dssp GEEEHHHHHHHTTCCCSSSHHHHHHHTTTCEEETTBCCCCTTCEEETTCEEEETT
T ss_pred hheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCceEEEEEEcC
Confidence 456789999998864 578999999999999999999987788888889999853
No 34
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=89.66 E-value=0.75 Score=33.14 Aligned_cols=51 Identities=24% Similarity=0.284 Sum_probs=36.2
Q ss_pred CccchHHHHHHhccCCCCHHHHHHHHHCC--cEEECCEEeccccccccCCCEEeee
Q 022299 68 AGKLRLDAWISSRIDGISRARVQSSIRSG--LVSINGQVVSKVSHNVKGGDMVNCT 121 (299)
Q Consensus 68 ~~g~RLdk~L~~~~~~~Sr~~~~~lI~~G--~V~vNGk~v~~~~~~l~~GD~I~v~ 121 (299)
.++.++.+++.... ... ..+++++..+ .|.|||+.+ ..+..|+.||+|.+.
T Consensus 23 ~~~~tv~~ll~~L~-~~~-p~~~~~l~~~~~~v~vN~~~v-~~~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 23 ADFPTVEALRQHMA-AQS-DRWALALEDGKLLAAVNQTLV-SFDHPLTDGDEVAFF 75 (81)
T ss_dssp SCCSBHHHHHHHHH-TTC-HHHHHHHCCTTCEEEETTEEC-CTTCBCCTTCEEEEE
T ss_pred CCCCCHHHHHHHHH-HHC-hhHHHHhcCCCEEEEECCEEC-CCCCCCCCCCEEEEe
Confidence 44567777776542 212 3566777555 488999998 578999999999884
No 35
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=89.42 E-value=0.068 Score=51.56 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=0.0
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEeccccccccCCCEE
Q 022299 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118 (299)
Q Consensus 70 g~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~GD~I 118 (299)
+..|.++|...--.-|+++++++|.+|.|+|||.+++..+..+.++|.+
T Consensus 352 ~i~l~~lL~~agl~~SksEARRlI~~GgV~VNgekv~d~~~~l~~~dl~ 400 (420)
T 1jil_A 352 TTNIVEVLIETGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKI 400 (420)
T ss_dssp -------------------------------------------------
T ss_pred cccHHHHHHHcCCccCHHHHHHHHHhCCEEECCEEecccccccCccccc
Confidence 4578888886622459999999999999999999998888888888755
No 36
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=88.26 E-value=0.61 Score=45.07 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=39.8
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEeccccccccCCC
Q 022299 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116 (299)
Q Consensus 70 g~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~GD 116 (299)
+..|-++|...--.-|+++++++|.+|.|+|||.+++.++..+..++
T Consensus 368 ~~~~~~~l~~~~l~~S~~earr~i~~ggv~vn~~~v~d~~~~~~~~~ 414 (432)
T 1h3f_A 368 RIWVARLFTLAGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDLSR 414 (432)
T ss_dssp EEEHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCEEECSS
T ss_pred cCcHHHHHHHhCCcccHHHHHHHHHhCCEEECCEEecCccceecCCC
Confidence 56788899876335699999999999999999999988888887765
No 37
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=86.99 E-value=0.43 Score=46.14 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=37.5
Q ss_pred hHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEeccccccccCCC
Q 022299 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116 (299)
Q Consensus 72 RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~GD 116 (299)
.|-++|...--.-|+++++++|.+|.|+|||.+++.++..+.++|
T Consensus 357 ~~~~ll~~~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~ 401 (432)
T 2jan_A 357 GIVDLLVASGLSASKGAARRTIHEGGVSVNNIRVDNEEWVPQSSD 401 (432)
T ss_dssp SHHHHHHHHTSCSSHHHHHHHHTTTCEEESSCEECCTTCCCCGGG
T ss_pred hHHHHHHHhCCcccHHHHHHHHHhCCEEECCEEccChhcccChhh
Confidence 688888876334699999999999999999999987777777654
No 38
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4}
Probab=82.03 E-value=1.1 Score=37.55 Aligned_cols=36 Identities=11% Similarity=-0.093 Sum_probs=30.0
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEe
Q 022299 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVV 105 (299)
Q Consensus 70 g~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v 105 (299)
+..|-++|...--.-|+++++++|.+|.|+|||.++
T Consensus 49 g~~ivdlLv~aGLa~SKsEARRlI~qGGv~VNg~kv 84 (164)
T 2ktl_A 49 DKTFSKVLWSAGLVASKSEGQRIINNNGAYVGSRPG 84 (164)
T ss_dssp SCSHHHHHHHHTSCSTHHHHHHHHHHTCEEEEECCS
T ss_pred CCcHHHHHHHhCcccCHHHHHHHHHhCCEEECCEec
Confidence 556888887663245999999999999999999776
No 39
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=80.37 E-value=0.34 Score=46.69 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=0.0
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEeccccccccCCCEE
Q 022299 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118 (299)
Q Consensus 70 g~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~GD~I 118 (299)
+..|-++|...--.-|+++++++|.+|.|+|||.+++..+..+.++|.+
T Consensus 351 ~~~~~~~l~~~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~~~ 399 (419)
T 2ts1_A 351 DVPLVELLVSAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHRL 399 (419)
T ss_dssp -------------------------------------------------
T ss_pred cccHHHHHHHhCCCCCHHHHHHHHHhCCEEECCEEecCcccccChhhcc
Confidence 4567788876522459999999999999999999998777777776543
No 40
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=74.30 E-value=0.4 Score=36.82 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=36.0
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEeccccccccCCCEEeeecc
Q 022299 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123 (299)
Q Consensus 69 ~g~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~GD~I~v~~~ 123 (299)
+|.++.+.|.+. ++....-.=-+....|-|||+.+ ..++.|+.||+|+|+.+
T Consensus 34 ~g~TV~daI~~~--gi~~~~peIdl~~~~V~Vng~~v-~~d~~L~dGDRVEIyrp 85 (97)
T 2hj1_A 34 EGITVQTAITQS--GILSQFPEIDLSTNKIGIFSRPI-KLTDVLKEGDRIEIYRP 85 (97)
T ss_dssp TTCBHHHHHHHH--THHHHCTTCCTTTSEEEEEECSC-CTTCBCCTTCEEEECCC
T ss_pred CCCcHHHHHHHc--CCCccCCcccccccEEEEcCEEC-CCCccCCCCCEEEEEec
Confidence 567899888865 23221100012246799999998 69999999999999753
No 41
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=74.16 E-value=1.6 Score=31.17 Aligned_cols=49 Identities=10% Similarity=0.179 Sum_probs=33.1
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEeccccccccCCCEEeee
Q 022299 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121 (299)
Q Consensus 70 g~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~GD~I~v~ 121 (299)
+.++.+++...- ..+ .+.+++..-.|.|||+.+...+..|+.||+|.+.
T Consensus 20 ~~tv~~ll~~L~-~~~--~l~~~l~~~~vavN~~~v~~~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 20 ANDLKELRAILQ-EKE--GLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLL 68 (74)
T ss_dssp CSSHHHHHHHHH-TCT--TTTTTTTTCEEEESSSEECCTTCCCCTTCEEEEE
T ss_pred CCcHHHHHHHHH-HCc--CHHHHhhccEEEECCEEcCCCCcCCCCCCEEEEE
Confidence 456666665432 111 2334456678899999855688999999999884
No 42
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=73.29 E-value=4 Score=35.94 Aligned_cols=41 Identities=20% Similarity=0.118 Sum_probs=31.4
Q ss_pred HCCcEEECCEEecccccccc-CCCEEeeeccccCCcccccCCCCeeEEEeCCcEEEE
Q 022299 94 RSGLVSINGQVVSKVSHNVK-GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVV 149 (299)
Q Consensus 94 ~~G~V~vNGk~v~~~~~~l~-~GD~I~v~~~~~~~~~~~~~~~~~~IlyeD~~llvv 149 (299)
.+|.|+|||++++ ....|+ .||.|.+.. +.+.+..+.++++
T Consensus 133 ~ngtvyvNg~~i~-~~~~L~~~GD~I~ig~--------------~~~~~~~~~l~i~ 174 (238)
T 1wv3_A 133 KNTDVYINYELQE-QLTNKAYIGDHIYVEG--------------IWLEVQADGLNVL 174 (238)
T ss_dssp TTCCEEETTEECC-SSEEEEETTCEEEETT--------------EEEEECSSEEEEE
T ss_pred CCCCEEECCEEec-cceeccCCcCEEEECC--------------EEEEEECCEEEEE
Confidence 3788999999994 566899 999998843 4566667777663
No 43
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=69.33 E-value=5.5 Score=31.58 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=20.9
Q ss_pred CcEEECCEEeccccccccCCCEEeee
Q 022299 96 GLVSINGQVVSKVSHNVKGGDMVNCT 121 (299)
Q Consensus 96 G~V~vNGk~v~~~~~~l~~GD~I~v~ 121 (299)
..++|||++++ ....|+.||+|.+-
T Consensus 90 ngt~VNG~~V~-~~~~L~~GD~I~lG 114 (124)
T 3fm8_A 90 TRTFVNGSSVS-SPIQLHHGDRILWG 114 (124)
T ss_dssp CCEEETTEECC-SCEEECTTCEEEET
T ss_pred CCEEECCEEcC-CcEECCCCCEEEEC
Confidence 46999999995 46789999999873
No 44
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=69.05 E-value=3.7 Score=29.08 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.1
Q ss_pred cEEECCEEeccccccccCCCEEeee
Q 022299 97 LVSINGQVVSKVSHNVKGGDMVNCT 121 (299)
Q Consensus 97 ~V~vNGk~v~~~~~~l~~GD~I~v~ 121 (299)
.|.|||+.+ ..+..|+.||+|.+.
T Consensus 48 ~v~vNg~~v-~~~~~L~~gD~V~i~ 71 (77)
T 2q5w_D 48 QVAVNEEFV-QKSDFIQPNDTVALI 71 (77)
T ss_dssp EEEETTEEE-CTTSEECTTCEEEEE
T ss_pred EEEECCEEC-CCCCCcCCCCEEEEE
Confidence 589999999 468999999999884
No 45
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=67.99 E-value=2.9 Score=30.05 Aligned_cols=43 Identities=23% Similarity=0.428 Sum_probs=32.0
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEeccccccccCCCEEeee
Q 022299 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121 (299)
Q Consensus 69 ~g~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~GD~I~v~ 121 (299)
++.++.++|... . ++ ...=.|.|||+.+ ..+..|+.||+|.+.
T Consensus 29 ~~~Tv~dLl~~L-~-~~-------~~~v~VavNg~~v-~~~~~L~dGD~V~i~ 71 (77)
T 1rws_A 29 EGMKVRDILRAV-G-FN-------TESAIAKVNGKVV-LEDDEVKDGDFVEVI 71 (77)
T ss_dssp SSCCHHHHHHTT-T-CS-------SCSSCEEETTEEE-CSSSCCCSSCCCBCS
T ss_pred CCCcHHHHHHHh-C-CC-------CcCEEEEECCEEC-CCCCCcCCCCEEEEE
Confidence 457899999864 2 33 1122589999999 468999999999884
No 46
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=66.71 E-value=4.8 Score=29.40 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=21.8
Q ss_pred CcEEECCEEeccccccccCCCEEeee
Q 022299 96 GLVSINGQVVSKVSHNVKGGDMVNCT 121 (299)
Q Consensus 96 G~V~vNGk~v~~~~~~l~~GD~I~v~ 121 (299)
-.|.|||+.+ ..++.|+.||+|.+.
T Consensus 59 ~~v~VN~~~v-~~~~~l~~gDeV~i~ 83 (89)
T 3po0_A 59 INVLRNGEAA-ALGEATAAGDELALF 83 (89)
T ss_dssp SEEEETTEEC-CTTSBCCTTCEEEEE
T ss_pred EEEEECCEEC-CCCcccCCCCEEEEE
Confidence 3688999999 579999999999885
No 47
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=60.90 E-value=6.3 Score=28.71 Aligned_cols=24 Identities=21% Similarity=0.589 Sum_probs=21.1
Q ss_pred EEECCEEeccccccccCCCEEeeec
Q 022299 98 VSINGQVVSKVSHNVKGGDMVNCTI 122 (299)
Q Consensus 98 V~vNGk~v~~~~~~l~~GD~I~v~~ 122 (299)
.+|||+.+ ..++.|+.||.|++..
T Consensus 44 AkVNG~~v-~L~~~L~~gd~VeIit 67 (78)
T 3hvz_A 44 AKVDGRIV-PIDYKVKTGEIIDVLT 67 (78)
T ss_dssp EEETTEEE-CTTCBCCTTCBEEEEE
T ss_pred EEECCEEc-CCCcccCCCCEEEEEc
Confidence 57899999 6899999999999854
No 48
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=59.34 E-value=7.7 Score=27.25 Aligned_cols=43 Identities=21% Similarity=0.313 Sum_probs=31.4
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEeccccccccCCCEEeee
Q 022299 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121 (299)
Q Consensus 69 ~g~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~GD~I~v~ 121 (299)
++.++.++|... .++. ..=.|.+||..+ ..+..|+.||+|.+.
T Consensus 22 ~~~tv~~Ll~~l--~~~~-------~~v~vavN~~~v-~~~~~L~~gD~V~ii 64 (70)
T 1ryj_A 22 APRRIKDVLGEL--EIPI-------ETVVVKKNGQIV-IDEEEIFDGDIIEVI 64 (70)
T ss_dssp SCCBHHHHHHHT--TCCT-------TTEEEEETTEEC-CTTSBCCTTCEEEEE
T ss_pred CCCcHHHHHHHh--CCCC-------CCEEEEECCEEC-CCcccCCCCCEEEEE
Confidence 457899999875 2331 111488999998 467799999999885
No 49
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=57.24 E-value=8.7 Score=26.38 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=31.3
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEecc---ccccccCCCEEeee
Q 022299 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSK---VSHNVKGGDMVNCT 121 (299)
Q Consensus 69 ~g~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v~~---~~~~l~~GD~I~v~ 121 (299)
++.++.++|... .+.. ..=.|.+||+.+.+ .++.|+.||+|.+.
T Consensus 12 ~~~tv~~ll~~l--~~~~-------~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~ 58 (64)
T 2cu3_A 12 EGKTLKEVLEEM--GVEL-------KGVAVLLNEEAFLGLEVPDRPLRDGDVVEVV 58 (64)
T ss_dssp TTCCHHHHHHHH--TBCG-------GGEEEEETTEEEEGGGCCCCCCCTTCEEEEE
T ss_pred CCCcHHHHHHHc--CCCC-------CcEEEEECCEECCccccCCcCCCCCCEEEEE
Confidence 457899999875 3442 11258899999843 24789999999985
No 50
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=56.81 E-value=5.2 Score=29.97 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=20.9
Q ss_pred cEEECCEEeccccccccCCCEEeee
Q 022299 97 LVSINGQVVSKVSHNVKGGDMVNCT 121 (299)
Q Consensus 97 ~V~vNGk~v~~~~~~l~~GD~I~v~ 121 (299)
.|.|||+.+ ..++.|+.||+|.+.
T Consensus 69 ~v~VNg~~v-~~~~~L~dGDeV~i~ 92 (98)
T 1vjk_A 69 NIAVNGRYV-SWDEELKDGDVVGVF 92 (98)
T ss_dssp EEEETTBCC-CTTCBCCTTCEEEEE
T ss_pred EEEECCEEC-CCCCCCCCCCEEEEE
Confidence 588999998 478999999999884
No 51
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=56.41 E-value=8 Score=28.44 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=20.8
Q ss_pred cEEECCEEecc---ccccccCCCEEeee
Q 022299 97 LVSINGQVVSK---VSHNVKGGDMVNCT 121 (299)
Q Consensus 97 ~V~vNGk~v~~---~~~~l~~GD~I~v~ 121 (299)
.|.|||+.+.. .++.|+.||+|.+.
T Consensus 60 ~v~VN~~~v~~~~~~~~~L~~gDeV~i~ 87 (93)
T 3dwg_C 60 NIYVNDEDVRFSGGLATAIADGDSVTIL 87 (93)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEEE
T ss_pred EEEECCEEccCcCCCCcCCCCCCEEEEE
Confidence 57899999843 58899999999874
No 52
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=55.67 E-value=9.8 Score=28.27 Aligned_cols=44 Identities=11% Similarity=0.187 Sum_probs=31.5
Q ss_pred cc-chHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEeccc---cccccCCCEEeee
Q 022299 69 GK-LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKV---SHNVKGGDMVNCT 121 (299)
Q Consensus 69 ~g-~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v~~~---~~~l~~GD~I~v~ 121 (299)
++ .+|.++|... .+.. ..=.|.|||+.+.+. ++.|+.||+|++.
T Consensus 34 ~~~~Tv~dLL~~L--~~~~-------~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~ 81 (87)
T 1tyg_B 34 KDTGTIQDLLASY--QLEN-------KIVIVERNKEIIGKERYHEVELCDRDVIEIV 81 (87)
T ss_dssp SSCCBHHHHHHHT--TCTT-------SCCEEEETTEEECGGGTTTSBCCSSSEEEEE
T ss_pred CCCCcHHHHHHHh--CCCC-------CCEEEEECCEECChhhcCCcCCCCCCEEEEE
Confidence 44 7899999875 3331 112478999998543 5789999999985
No 53
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=54.57 E-value=11 Score=31.90 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.6
Q ss_pred CcEEECCEEeccccccccCCCEEee
Q 022299 96 GLVSINGQVVSKVSHNVKGGDMVNC 120 (299)
Q Consensus 96 G~V~vNGk~v~~~~~~l~~GD~I~v 120 (299)
..++|||++|+ ....|+.||+|.+
T Consensus 140 a~t~VNG~~I~-~~~~L~~GDrI~l 163 (184)
T 4egx_A 140 ADTYVNGKKVT-EPSILRSGNRIIM 163 (184)
T ss_dssp CCEEETTEECC-SCEECCTTCEEEE
T ss_pred CeEEEcCEEcc-ccEEcCCCCEEEE
Confidence 46999999995 5678999999976
No 54
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=53.75 E-value=7.2 Score=26.94 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=31.5
Q ss_pred CccchHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEeccc---cccccCCCEEeee
Q 022299 68 AGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKV---SHNVKGGDMVNCT 121 (299)
Q Consensus 68 ~~g~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v~~~---~~~l~~GD~I~v~ 121 (299)
.++.++.++|... .+.+ ..=.|.|||..+.+. ++.|+.||+|.+.
T Consensus 13 ~~~~tv~~ll~~l--~~~~-------~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 13 AAGQTVHELLEQL--DQRQ-------AGAALAINQQIVPREQWAQHIVQDGDQILLF 60 (66)
T ss_dssp CTTCCHHHHHHHH--TCCC-------SSEEEEETTEEECHHHHTTCCCCTTEEECEE
T ss_pred CCCCcHHHHHHHc--CCCC-------CCEEEEECCEECCchhcCCcCCCCCCEEEEE
Confidence 3567899999875 2331 111478999998532 6789999999885
No 55
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=53.29 E-value=6.5 Score=28.12 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=32.7
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEeccc---cccccCCCEEeeec
Q 022299 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKV---SHNVKGGDMVNCTI 122 (299)
Q Consensus 69 ~g~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v~~~---~~~l~~GD~I~v~~ 122 (299)
++.+|.++|.+. ++.. +.=.|.+||..+.+. ++.|+.||+|++..
T Consensus 13 ~~~Tl~~LL~~l--~~~~-------~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 13 QSASVAALMTEL--DCTG-------GHFAVALNYDVVPRGKWDETPVTAGDEIEILT 60 (73)
T ss_dssp CCSBHHHHHHHT--TCCS-------SSCEEEESSSEECHHHHTTCBCCTTCEEEEEC
T ss_pred CCCcHHHHHHHc--CCCC-------CcEEEEECCEECChHHcCcccCCCCCEEEEEc
Confidence 568899999875 3442 112578999988543 57899999999853
No 56
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=52.78 E-value=24 Score=25.35 Aligned_cols=50 Identities=8% Similarity=0.203 Sum_probs=31.1
Q ss_pred cchHHHHHHhccCCCCHHHHHHH-H-------HCCcEEECCEEecc---ccccccCCCEEeee
Q 022299 70 KLRLDAWISSRIDGISRARVQSS-I-------RSGLVSINGQVVSK---VSHNVKGGDMVNCT 121 (299)
Q Consensus 70 g~RLdk~L~~~~~~~Sr~~~~~l-I-------~~G~V~vNGk~v~~---~~~~l~~GD~I~v~ 121 (299)
+.++.++|.......+ .+++. + ..=.|.|||+.+.. .++.|+.||+|.+.
T Consensus 24 ~~tv~~ll~~l~~~~p--~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 24 ISKISELLERLKVEYG--SEFTKQMYDGNNLFKNVIILVNGNNITSMKGLDTEIKDDDKIDLF 84 (90)
T ss_dssp CCBHHHHHHHHHHHSC--HHHHHHHCCSSCSTTTCEEEESSSBGGGTCSSSCBCCTTCEEEEE
T ss_pred CCcHHHHHHHHHHHCc--chhhhccccccCcCcceEEEECCEEccccCCCCcCCCCCCEEEEe
Confidence 4566666654321112 34443 3 22358899998842 68889999999874
No 57
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=51.63 E-value=7.3 Score=28.24 Aligned_cols=46 Identities=24% Similarity=0.372 Sum_probs=32.8
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEeccc---cccccCCCEEeeec
Q 022299 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKV---SHNVKGGDMVNCTI 122 (299)
Q Consensus 69 ~g~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v~~~---~~~l~~GD~I~v~~ 122 (299)
++.+|.++|.+. ++.+ .+.=.|.+||..+.+. ++.|+.||+|+|..
T Consensus 16 ~~~Tl~~LL~~l--~~~~------~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 16 ESLNVTELLSAL--KVAQ------AEYVTVELNGEVLEREAFDATTVKDGDAVEFLY 64 (78)
T ss_dssp SCEEHHHHHHHH--TCSC------TTTCCEEETTEECCTTHHHHCEECSSBCEEECC
T ss_pred CCCcHHHHHHHc--CCCC------CCcEEEEECCEECChHHcCcccCCCCCEEEEEe
Confidence 457899999875 3441 1112588999998544 47899999999853
No 58
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=47.77 E-value=13 Score=30.34 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.3
Q ss_pred CcEEECCEEeccccccccCCCEEee
Q 022299 96 GLVSINGQVVSKVSHNVKGGDMVNC 120 (299)
Q Consensus 96 G~V~vNGk~v~~~~~~l~~GD~I~v 120 (299)
..++|||++++ ....|+.||+|.+
T Consensus 110 ngt~VNG~~i~-~~~~L~~GD~I~~ 133 (154)
T 4ejq_A 110 ADTYVNGKKVT-EPSILRSGNRIIM 133 (154)
T ss_dssp CCEEETTEECC-SCEECCTTCEEEE
T ss_pred CceEECCEEcC-CceECCCCCEEEE
Confidence 46999999994 4567999999987
No 59
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=46.95 E-value=14 Score=25.55 Aligned_cols=46 Identities=15% Similarity=0.028 Sum_probs=29.7
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEeccccccccCCCEEeeec
Q 022299 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (299)
Q Consensus 69 ~g~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~GD~I~v~~ 122 (299)
.|.++.+++... +.....+. =.+.|||+.+ ..++.|+.||.|++..
T Consensus 17 ~g~T~~dla~~i----~~~l~~~~---vaa~vNg~lv-dl~~~L~~~~~Veivt 62 (73)
T 2kmm_A 17 QGATALDFAYSL----HSDLGDHC---IGAKVNHKLV-PLSYVLNSGDQVEVLS 62 (73)
T ss_dssp TTCBHHHHHHHH----CSHHHHTE---EEEEETTEEC-CTTCBCCSSSBEEEEE
T ss_pred CCCcHHHHHHHH----hhccccce---EEEEECCEEe-CCCcCcCCCCEEEEEE
Confidence 456777777653 11111111 1347899998 5899999999998754
No 60
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=45.77 E-value=13 Score=28.76 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=28.5
Q ss_pred HHHHHHhccCCCCHHHHHHHH-HCC--c------EEECCEEec---cccccccCCCEEee
Q 022299 73 LDAWISSRIDGISRARVQSSI-RSG--L------VSINGQVVS---KVSHNVKGGDMVNC 120 (299)
Q Consensus 73 Ldk~L~~~~~~~Sr~~~~~lI-~~G--~------V~vNGk~v~---~~~~~l~~GD~I~v 120 (299)
|-++|++.++.. |. +++ ..| . |.|||..+. ..++.|+.||+|.+
T Consensus 40 Ll~~L~~~~~~~-r~---~lf~~~g~~~lrpgIlVLVNg~d~e~l~gldt~L~dgD~V~f 95 (110)
T 2k9x_A 40 LVQLLKTNYVKE-RP---DLLVDQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEF 95 (110)
T ss_dssp HHHHHTTTTCCS-CH---HHHBCSSSSSBCTTEEEEESSSBHHHHTSSCCCCCSSCEEEE
T ss_pred HHHHHHHHcccc-ch---hhEecCCCcccCCCeEEEECCeeeeccCCcccCCCCcCEEEE
Confidence 556666665444 22 333 334 2 789997762 46789999999877
No 61
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=40.55 E-value=29 Score=23.18 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=24.3
Q ss_pred chHHHHHHhccCCCCHHHHHHHHHCCcEE
Q 022299 71 LRLDAWISSRIDGISRARVQSSIRSGLVS 99 (299)
Q Consensus 71 ~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~ 99 (299)
.+|++|-...|...|.+.+++++++|.|.
T Consensus 3 ltl~EwA~~~~~~~s~~Tl~r~ar~G~I~ 31 (52)
T 2og0_A 3 LTLQEWNARQRRPRSLETVRRWVRESRIF 31 (52)
T ss_dssp EEHHHHHHTSSSCCCHHHHHHHHHTTCEE
T ss_pred eeHHHHHHHhcCCCCHHHHHHHHHCCCCC
Confidence 36888888776458999999999999994
No 62
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=40.33 E-value=5.6 Score=31.09 Aligned_cols=45 Identities=18% Similarity=0.190 Sum_probs=29.1
Q ss_pred HHHHHHhccCCCCHHHHHHHHHCC------cEEECCEEec---cccccccCCCEEee
Q 022299 73 LDAWISSRIDGISRARVQSSIRSG------LVSINGQVVS---KVSHNVKGGDMVNC 120 (299)
Q Consensus 73 Ldk~L~~~~~~~Sr~~~~~lI~~G------~V~vNGk~v~---~~~~~l~~GD~I~v 120 (299)
|-++|.+.++...++.+. ..| .|+|||.-+. ..++.|+.||+|.+
T Consensus 48 Ll~~L~~~~~~~~~~lf~---~~g~lr~~i~VlVN~~di~~l~gldt~L~dGDeV~i 101 (114)
T 1wgk_A 48 LLVWIKKNLLKERPELFI---QGDSVRPGILVLINDADWELLGELDYQLQDQDSILF 101 (114)
T ss_dssp HHHHHTTTTCCSCHHHHC---CSSSCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEE
T ss_pred HHHHHHHHccchhHhhCc---cCCcccCCeEEEECCeeeeccCCcCcCCCCCCEEEE
Confidence 566666666555333221 223 3889997652 46789999999887
No 63
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=39.88 E-value=9.3 Score=29.47 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=18.3
Q ss_pred HCCcEEECCEEeccccccccCCCEE
Q 022299 94 RSGLVSINGQVVSKVSHNVKGGDMV 118 (299)
Q Consensus 94 ~~G~V~vNGk~v~~~~~~l~~GD~I 118 (299)
.+|.|+|||+++ ....|..||.|
T Consensus 60 ~nGtVFVNGqrv--~~~~I~~gDtI 82 (102)
T 3uv0_A 60 LVGKIFVNDQEE--TVVDIGMENAV 82 (102)
T ss_dssp SSSCEEETTEEE--SEEEECGGGCB
T ss_pred ccCcEEECCEEe--eeEEccCCccc
Confidence 368999999998 36678888864
No 64
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=39.37 E-value=9.5 Score=27.33 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=31.8
Q ss_pred CccchHHHHHHhccCCCCHHHHHHHHHCCcEEECCEEeccccccccCCCEEeee
Q 022299 68 AGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121 (299)
Q Consensus 68 ~~g~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~vNGk~v~~~~~~l~~GD~I~v~ 121 (299)
.++.++.++|.+. +++.+.+ .|.+||+.+ ..+..+. ||.|++.
T Consensus 18 ~~g~Tv~dLL~~L--gl~~~~V-------vV~vNG~~v-~~d~~l~-GD~VeIv 60 (74)
T 2l32_A 18 DDDGTYADLVRAV--DLSPHEV-------TVLVDGRPV-PEDQSVE-VDRVKVL 60 (74)
T ss_dssp STTCSHHHHHHTT--CCCSSCC-------CEECCCCCC-CTTSSSC-CCCEEEC
T ss_pred CCCCcHHHHHHHc--CCCcceE-------EEEECCEEC-CHHHCCC-CCEEEEE
Confidence 4567899999875 4655432 488999998 4677665 9999984
No 65
>2rsx_A Uncharacterized protein YOEB; inhibitor protein, hacksaw-like fold, autolysin inhibitor, D endopeptidase inhibitor, hydrolase inhibitor; NMR {Bacillus subtilis}
Probab=38.01 E-value=73 Score=26.35 Aligned_cols=53 Identities=8% Similarity=0.185 Sum_probs=40.1
Q ss_pred CCccCCCceEEEEEEcCCCccchHHHHHHhccCCCCHHHHHHHHHCC-cEEECCEEe
Q 022299 50 EPIANYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSG-LVSINGQVV 105 (299)
Q Consensus 50 ~~~~~~~~~~~~~~v~~~~~g~RLdk~L~~~~~~~Sr~~~~~lI~~G-~V~vNGk~v 105 (299)
.+.-.+.|..|....+.-.....|.++|.+. .+.+.+.+.|..- -+-+||+-+
T Consensus 42 ~~~f~~~g~~Y~~l~~d~nTkeKL~~YLn~y---fTk~ai~~~ik~~~f~e~nGkla 95 (159)
T 2rsx_A 42 SGTFEYQNLQYVYMCSDLGTKAKAVNYLTPI---FTKTAIEKGFKDYHFTVSKGKLA 95 (159)
T ss_dssp CCEEEETTEEEEECCTTSSSHHHHHHHHTTT---BCHHHHHHHHHTTTCEEETTEEE
T ss_pred cCceEECCEEeEEcccccCCHHHHHHHHHHH---HHHHHHHHHHhccceEEECCEEE
Confidence 3444567888886667777778899999975 5999999987554 555899865
No 66
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=36.12 E-value=24 Score=27.84 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.3
Q ss_pred CcEEECCEEeccccccccCCCEEeee
Q 022299 96 GLVSINGQVVSKVSHNVKGGDMVNCT 121 (299)
Q Consensus 96 G~V~vNGk~v~~~~~~l~~GD~I~v~ 121 (299)
..++|||+++.. ..|+.||+|.+-
T Consensus 82 NGT~vNg~~i~~--~~L~~GD~I~iG 105 (131)
T 3hx1_A 82 NGLMINGKKVQE--HIIQTGDEIVMG 105 (131)
T ss_dssp SCEEETTEEESE--EECCTTCEEECS
T ss_pred CceEECCEEeEe--EECCCCCEEEEC
Confidence 578999999953 889999999884
No 67
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=35.89 E-value=16 Score=28.15 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=20.8
Q ss_pred CCcEEECCEEeccccccccCCCEEeee
Q 022299 95 SGLVSINGQVVSKVSHNVKGGDMVNCT 121 (299)
Q Consensus 95 ~G~V~vNGk~v~~~~~~l~~GD~I~v~ 121 (299)
...++|||+++. ....|+.||+|.+-
T Consensus 79 ~ngt~vNg~~i~-~~~~L~~GD~I~iG 104 (120)
T 1wln_A 79 DAETYVDGQRIS-ETTMLQSGMRLQFG 104 (120)
T ss_dssp SSCEEETSCBCS-SCEEECTTCEEEET
T ss_pred CCCEEECCEEcC-CCEECCCCCEEEEC
Confidence 467899999994 44689999999873
No 68
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=34.47 E-value=29 Score=25.78 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=20.1
Q ss_pred cEEECCEEec---cccccccCCCEEeee
Q 022299 97 LVSINGQVVS---KVSHNVKGGDMVNCT 121 (299)
Q Consensus 97 ~V~vNGk~v~---~~~~~l~~GD~I~v~ 121 (299)
.|.||+.-+. ..++.|+.||+|.+.
T Consensus 66 ~v~VN~~~~~~~~~~d~~L~dgDeVa~~ 93 (99)
T 2qjl_A 66 ITLINDTDWELEGEKDYILEDGDIISFT 93 (99)
T ss_dssp EEEETTEEGGGGTGGGCBCCTTCEEEEE
T ss_pred EEEECCEEccccCCCCcCcCCCCEEEEE
Confidence 4889998763 367899999999874
No 69
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=33.98 E-value=20 Score=26.94 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=19.9
Q ss_pred CcEEECCEEeccccccccCCCEEeee
Q 022299 96 GLVSINGQVVSKVSHNVKGGDMVNCT 121 (299)
Q Consensus 96 G~V~vNGk~v~~~~~~l~~GD~I~v~ 121 (299)
..++|||+++. ....|+.||+|.+-
T Consensus 69 nGt~vng~~i~-~~~~L~~Gd~i~~G 93 (106)
T 3gqs_A 69 NGVIVEGRKIE-HQSTLSANQVVALG 93 (106)
T ss_dssp SCCEETTEECS-SEEECCTTCCEEET
T ss_pred CCeEECCEECC-CCeECCCCCEEEEC
Confidence 45789999984 35689999999874
No 70
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=33.58 E-value=16 Score=27.41 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=20.5
Q ss_pred cEEECCEEec---cccccccCCCEEeee
Q 022299 97 LVSINGQVVS---KVSHNVKGGDMVNCT 121 (299)
Q Consensus 97 ~V~vNGk~v~---~~~~~l~~GD~I~v~ 121 (299)
.|.|||+.+. ..++.|+.||+|.+.
T Consensus 66 ~v~VNg~~v~~~~~~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 66 NILINGNNIRHLEGLETLLKDSDEIGIL 93 (99)
T ss_dssp EEEETTSCGGGTTSTTSCCCTTEEEEEE
T ss_pred EEEECCEEccccCCCCCCCCCCCEEEEE
Confidence 6899998873 357889999999874
No 71
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=33.54 E-value=31 Score=26.18 Aligned_cols=23 Identities=48% Similarity=0.735 Sum_probs=18.1
Q ss_pred CCcEEECCEEeccccccccCCCEEeee
Q 022299 95 SGLVSINGQVVSKVSHNVKGGDMVNCT 121 (299)
Q Consensus 95 ~G~V~vNGk~v~~~~~~l~~GD~I~v~ 121 (299)
.|.|.+||- +...+++||.|.+-
T Consensus 42 SG~I~lNGA----AArl~~~GD~vII~ 64 (96)
T 1vc3_B 42 SGVIGINGA----AAHLVKPGDLVILV 64 (96)
T ss_dssp TTCEEEEGG----GGGTCCTTCEEEEE
T ss_pred CCeEEEchH----HHccCCCCCEEEEE
Confidence 478999993 45679999988864
No 72
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=33.50 E-value=39 Score=26.43 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=17.7
Q ss_pred CCcEEECCEEeccccccccCCCEEeee
Q 022299 95 SGLVSINGQVVSKVSHNVKGGDMVNCT 121 (299)
Q Consensus 95 ~G~V~vNGk~v~~~~~~l~~GD~I~v~ 121 (299)
.|.|.+||- +...+++||.|.+-
T Consensus 69 Sg~I~lNGA----AAr~~~~GD~vII~ 91 (114)
T 3oug_A 69 SKTIALNGP----AARRCEIGDQLFII 91 (114)
T ss_dssp SCCEEEEGG----GGGGCCTTCEEEEE
T ss_pred CCEEEeCCH----HHhccCCCCEEEEE
Confidence 478889993 45679999988874
No 73
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=32.00 E-value=30 Score=28.70 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=20.5
Q ss_pred cEEECCEEecc---ccccccCCCEEeee
Q 022299 97 LVSINGQVVSK---VSHNVKGGDMVNCT 121 (299)
Q Consensus 97 ~V~vNGk~v~~---~~~~l~~GD~I~v~ 121 (299)
.|.|||+.+.. .++.|+.||+|.+.
T Consensus 54 ~VaVNg~~v~~~~~~dt~L~dGDeVai~ 81 (168)
T 1v8c_A 54 SVFLEGRDVRYLQGLSTPLSPGATLDLF 81 (168)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEEE
T ss_pred EEEECCEECCCcCCCccCCCCCCEEEEE
Confidence 58899999843 27889999999884
No 74
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=28.29 E-value=31 Score=26.25 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=18.5
Q ss_pred CCcEEECCEEeccccccccCCCEEeee
Q 022299 95 SGLVSINGQVVSKVSHNVKGGDMVNCT 121 (299)
Q Consensus 95 ~G~V~vNGk~v~~~~~~l~~GD~I~v~ 121 (299)
+|.|.+||- +...+++||.|.+-
T Consensus 40 SG~I~lNGA----AArl~~~GD~vII~ 62 (97)
T 1uhe_A 40 RGEICVNGA----AARKVAIGDVVIIL 62 (97)
T ss_dssp TTCEEEEGG----GGGGCCTTCEEEEE
T ss_pred CCeEEEchH----HHccCCCCCEEEEE
Confidence 589999993 45679999988864
No 75
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=28.24 E-value=45 Score=26.20 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=18.5
Q ss_pred CcEEECCEEecccc--ccccCCCEEeee
Q 022299 96 GLVSINGQVVSKVS--HNVKGGDMVNCT 121 (299)
Q Consensus 96 G~V~vNGk~v~~~~--~~l~~GD~I~v~ 121 (299)
...+|||+++. .. ..|+.||+|.+-
T Consensus 94 NGT~vNg~ri~-~~~~~~L~~GD~I~~G 120 (130)
T 4h87_A 94 HGTFLNKTRIP-PRTYCRVHVGHVVRFG 120 (130)
T ss_dssp SCEEETTEECC-TTCCEECCTTCEEEET
T ss_pred CceEECCEECC-CCceeECCCCCEEEEC
Confidence 45668999884 43 358999999873
No 76
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=28.18 E-value=33 Score=25.34 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=19.8
Q ss_pred CcEEECCEEeccccccccCCCEEeee
Q 022299 96 GLVSINGQVVSKVSHNVKGGDMVNCT 121 (299)
Q Consensus 96 G~V~vNGk~v~~~~~~l~~GD~I~v~ 121 (299)
..++|||+++. ...|+.||+|.+-
T Consensus 65 nGt~vng~~i~--~~~L~~gd~i~iG 88 (100)
T 3po8_A 65 NGTTVNNAPVQ--EWQLADGDVIRLG 88 (100)
T ss_dssp SCCEETTEECS--EEECCTTCEEEET
T ss_pred CCEEECCEECc--eEECCCCCEEEEC
Confidence 46889999984 5789999999874
No 77
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=27.93 E-value=39 Score=27.43 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=17.4
Q ss_pred CCcEEECCEEeccccccccCCCEEeee
Q 022299 95 SGLVSINGQVVSKVSHNVKGGDMVNCT 121 (299)
Q Consensus 95 ~G~V~vNGk~v~~~~~~l~~GD~I~v~ 121 (299)
.|.|.+||- +...+++||.|.+-
T Consensus 83 SG~I~lNGA----AArl~~~GD~VII~ 105 (143)
T 1pqh_A 83 SRIISVNGA----AAHCASVGDIVIIA 105 (143)
T ss_dssp CCCEECCGG----GGGTCCTTCEEEEE
T ss_pred CceEEechH----HHccCCCCCEEEEE
Confidence 467888883 45679999988864
No 78
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=26.04 E-value=39 Score=27.09 Aligned_cols=28 Identities=25% Similarity=0.213 Sum_probs=21.1
Q ss_pred HCCcEEECCEEeccccccccCCCEEeee
Q 022299 94 RSGLVSINGQVVSKVSHNVKGGDMVNCT 121 (299)
Q Consensus 94 ~~G~V~vNGk~v~~~~~~l~~GD~I~v~ 121 (299)
.....+|||+++......|+.||+|.+-
T Consensus 85 S~NGT~VNg~~i~~~~~~L~~GD~I~lG 112 (151)
T 2jqj_A 85 SRNGTFINGNRLVKKDYILKNGDRIVFG 112 (151)
T ss_dssp CSSCEEETTEECCSSCEEECSSEEEEET
T ss_pred CCCCeEECCEEcCCCceECCCCCEEEEC
Confidence 3456889999984224779999999884
No 79
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=25.99 E-value=34 Score=26.49 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=20.2
Q ss_pred CcEEECCEEeccccccccCCCEEeee
Q 022299 96 GLVSINGQVVSKVSHNVKGGDMVNCT 121 (299)
Q Consensus 96 G~V~vNGk~v~~~~~~l~~GD~I~v~ 121 (299)
..++|||+++. ....|+.||+|.+-
T Consensus 75 nGt~vNg~~i~-~~~~L~~Gd~i~iG 99 (128)
T 1r21_A 75 NPTQVNGSVID-EPVRLKHGDVITII 99 (128)
T ss_dssp SCCEETTEECS-SCEECCTTEEEECS
T ss_pred CCEEECCEECC-CcEEcCCCCEEEEC
Confidence 45789999984 45789999999884
No 80
>1pm6_A Excisionase; antiparallel beta-sheet, winged-helix, CIS-trans-trans triproline, gene regulation; NMR {Enterobacteria phage HK022} SCOP: a.6.1.7
Probab=25.80 E-value=56 Score=23.32 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=24.5
Q ss_pred chHHHHHHhccCCCCHHHHHHHHHCCcEE
Q 022299 71 LRLDAWISSRIDGISRARVQSSIRSGLVS 99 (299)
Q Consensus 71 ~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~ 99 (299)
.+|++|-...|...|.+.+++++++|.|.
T Consensus 3 lTl~EwA~~~~~~~s~~Tl~r~ar~G~I~ 31 (72)
T 1pm6_A 3 LTLQEWNARQRRPRSLETVRRWVRESRIF 31 (72)
T ss_dssp EEHHHHHHHSSSCCCHHHHHHHHHHTCEE
T ss_pred eeHHHHHHHhcCCCCHHHHHHHHHCCCCC
Confidence 36888988876458999999999999995
No 81
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=24.77 E-value=35 Score=29.85 Aligned_cols=49 Identities=10% Similarity=0.119 Sum_probs=34.4
Q ss_pred CccchHHHHHHhccCCCCHHHHHHHHHCCcEEE---CCEEeccc-------cccccCCCEEeeecc
Q 022299 68 AGKLRLDAWISSRIDGISRARVQSSIRSGLVSI---NGQVVSKV-------SHNVKGGDMVNCTIS 123 (299)
Q Consensus 68 ~~g~RLdk~L~~~~~~~Sr~~~~~lI~~G~V~v---NGk~v~~~-------~~~l~~GD~I~v~~~ 123 (299)
..|+.+.+||... ++.++ -...+|+| ||.+.... ...+.|||+|.|...
T Consensus 145 ~~g~~~~dYi~~a-gg~~~------Ad~~~v~VI~~nG~v~~~~~a~Wn~~~~~l~PG~~I~Vp~~ 203 (236)
T 3p42_A 145 LAGRSVTDYLQDH-PRLAG------ADKNNVMVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFS 203 (236)
T ss_dssp CTTCCHHHHHTTS-CBCTT------BCSSEEEEECTTSCEEEEECSSTTCCCEECCTTCEEEECBC
T ss_pred cCCCCHHHHHHhC-CCCCC------CCCccEEEEeCCCCEEeccccccccCCCCCCCCCEEEEeCC
Confidence 4788999999987 55652 23667776 88765211 346999999988653
No 82
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=23.67 E-value=38 Score=26.02 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=18.3
Q ss_pred CCcEEECCEEeccccccccCCCEEeee
Q 022299 95 SGLVSINGQVVSKVSHNVKGGDMVNCT 121 (299)
Q Consensus 95 ~G~V~vNGk~v~~~~~~l~~GD~I~v~ 121 (299)
.|.|.+||- +...+++||.|.+-
T Consensus 41 SG~I~lNGA----AArl~~~GD~vII~ 63 (102)
T 3plx_B 41 EGVVCLNGA----AARLAEVGDKVIIM 63 (102)
T ss_dssp TTCEEEEGG----GGGGCCTTCEEEEE
T ss_pred CCEEEeCcH----HHhccCCCCEEEEE
Confidence 488999993 45679999998874
No 83
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=22.73 E-value=52 Score=24.93 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=19.6
Q ss_pred CcEEECCEEeccccccccCCCEEeee
Q 022299 96 GLVSINGQVVSKVSHNVKGGDMVNCT 121 (299)
Q Consensus 96 G~V~vNGk~v~~~~~~l~~GD~I~v~ 121 (299)
...+|||+++. ...|+.||+|.+-
T Consensus 73 nGt~vng~~i~--~~~L~~gd~i~iG 96 (115)
T 2xt9_B 73 NGTYVNREPVD--SAVLANGDEVQIG 96 (115)
T ss_dssp SCEEETTEECS--EEEECTTCEEEET
T ss_pred CCeEECCEEcc--eEECCCCCEEEEC
Confidence 46789999984 5789999999883
No 84
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=20.81 E-value=51 Score=26.65 Aligned_cols=23 Identities=43% Similarity=0.689 Sum_probs=17.9
Q ss_pred CCcEEECCEEeccccccccCCCEEeee
Q 022299 95 SGLVSINGQVVSKVSHNVKGGDMVNCT 121 (299)
Q Consensus 95 ~G~V~vNGk~v~~~~~~l~~GD~I~v~ 121 (299)
.|.|.+||- +...+++||.|.+-
T Consensus 66 SG~I~lNGA----AArl~~~GD~vII~ 88 (139)
T 2c45_A 66 SGVIGINGA----AAHLVHPGDLVILI 88 (139)
T ss_dssp TTCEEEESS----TTTTSCTTCEEEEE
T ss_pred CCEEEEchH----HHccCCCCCEEEEE
Confidence 478999993 45679999988874
No 85
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=20.39 E-value=72 Score=25.05 Aligned_cols=26 Identities=15% Similarity=0.200 Sum_probs=20.6
Q ss_pred CcEEECCEEeccc--cccccCCCEEeeec
Q 022299 96 GLVSINGQVVSKV--SHNVKGGDMVNCTI 122 (299)
Q Consensus 96 G~V~vNGk~v~~~--~~~l~~GD~I~v~~ 122 (299)
...+|||+++. . ...|+.||+|.+-.
T Consensus 75 NGT~vNg~~l~-~~~~~~L~~GD~I~lG~ 102 (138)
T 2pie_A 75 NGVWLNRARLE-PLRVYSIHQGDYIQLGV 102 (138)
T ss_dssp SCEEETTEECC-TTCCEECCTTCEEEESC
T ss_pred CCeEECCEEcC-CCCcEECCCCCEEEECC
Confidence 46789999984 4 36799999999854
Done!