Query 022300
Match_columns 299
No_of_seqs 125 out of 1536
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 02:28:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022300.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022300hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 1.2E-49 2.6E-54 361.3 27.0 252 17-284 42-312 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 1.6E-49 3.5E-54 354.8 24.4 261 17-287 53-331 (336)
3 COG0656 ARA1 Aldo/keto reducta 100.0 1.3E-48 2.8E-53 342.8 21.5 221 17-285 37-268 (280)
4 TIGR01293 Kv_beta voltage-depe 100.0 7.9E-47 1.7E-51 344.6 24.6 253 17-279 38-316 (317)
5 PRK09912 L-glyceraldehyde 3-ph 100.0 1.1E-46 2.4E-51 347.3 25.7 257 17-284 52-336 (346)
6 PRK10625 tas putative aldo-ket 100.0 7E-46 1.5E-50 342.3 25.9 251 18-281 40-339 (346)
7 PF00248 Aldo_ket_red: Aldo/ke 100.0 7.6E-46 1.6E-50 332.9 20.6 242 17-280 26-282 (283)
8 PLN02587 L-galactose dehydroge 100.0 6.1E-44 1.3E-48 325.3 26.2 241 17-284 40-303 (314)
9 PRK11172 dkgB 2,5-diketo-D-glu 100.0 2.6E-44 5.5E-49 320.5 22.9 219 17-284 25-255 (267)
10 cd06660 Aldo_ket_red Aldo-keto 100.0 6.5E-43 1.4E-47 314.2 25.3 233 17-278 38-284 (285)
11 KOG1577 Aldo/keto reductase fa 100.0 2.2E-43 4.9E-48 309.9 19.9 224 17-284 37-288 (300)
12 PRK10376 putative oxidoreducta 100.0 2E-42 4.4E-47 311.8 24.4 222 17-282 49-289 (290)
13 PRK14863 bifunctional regulato 100.0 6.3E-42 1.4E-46 308.4 20.4 230 17-278 41-279 (292)
14 PRK11565 dkgA 2,5-diketo-D-glu 100.0 2E-41 4.3E-46 303.0 21.8 217 18-282 38-263 (275)
15 COG4989 Predicted oxidoreducta 100.0 1.4E-41 3E-46 287.1 18.6 232 17-283 40-295 (298)
16 COG1453 Predicted oxidoreducta 100.0 2.9E-37 6.3E-42 274.3 17.8 225 17-283 43-287 (391)
17 KOG1576 Predicted oxidoreducta 100.0 4E-34 8.7E-39 243.6 20.9 252 17-296 63-339 (342)
18 KOG3023 Glutamate-cysteine lig 98.0 1.3E-05 2.9E-10 68.4 6.9 71 93-164 156-227 (285)
19 PF07021 MetW: Methionine bios 86.8 4.6 9.9E-05 34.1 8.1 112 56-170 44-172 (193)
20 PRK10558 alpha-dehydro-beta-de 86.3 8.5 0.00019 34.0 10.1 67 99-166 10-78 (256)
21 TIGR03239 GarL 2-dehydro-3-deo 83.7 13 0.00028 32.8 10.0 65 101-166 5-71 (249)
22 cd03174 DRE_TIM_metallolyase D 82.8 9.9 0.00022 33.3 9.1 106 55-164 15-135 (265)
23 PRK10128 2-keto-3-deoxy-L-rham 80.9 22 0.00048 31.7 10.4 66 99-165 9-76 (267)
24 COG1140 NarY Nitrate reductase 77.6 1.3 2.8E-05 41.0 1.5 56 105-160 263-318 (513)
25 TIGR02311 HpaI 2,4-dihydroxyhe 76.3 34 0.00075 30.0 10.2 66 99-165 3-70 (249)
26 PRK14461 ribosomal RNA large s 76.2 22 0.00048 33.2 9.2 88 80-168 232-352 (371)
27 PRK07535 methyltetrahydrofolat 75.8 57 0.0012 28.9 11.6 100 56-164 22-123 (261)
28 PRK09613 thiH thiamine biosynt 72.0 1E+02 0.0022 30.0 13.3 108 56-166 115-241 (469)
29 PRK13352 thiamine biosynthesis 71.9 92 0.002 29.6 12.9 96 54-171 138-233 (431)
30 PRK05692 hydroxymethylglutaryl 71.9 41 0.00088 30.3 9.8 108 55-165 22-141 (287)
31 TIGR00190 thiC thiamine biosyn 71.5 55 0.0012 30.9 10.5 96 54-171 135-230 (423)
32 cd00423 Pterin_binding Pterin 71.3 49 0.0011 29.2 10.0 103 56-165 21-128 (258)
33 COG2355 Zn-dependent dipeptida 68.2 54 0.0012 29.9 9.6 30 246-277 269-299 (313)
34 TIGR01496 DHPS dihydropteroate 67.9 87 0.0019 27.6 11.2 101 56-164 20-125 (257)
35 PRK13753 dihydropteroate synth 67.3 91 0.002 28.0 10.8 102 56-166 22-128 (279)
36 cd00739 DHPS DHPS subgroup of 63.3 1.1E+02 0.0023 27.1 12.2 102 56-164 21-127 (257)
37 PF07994 NAD_binding_5: Myo-in 63.1 61 0.0013 29.4 9.0 145 58-257 131-283 (295)
38 PF00809 Pterin_bind: Pterin b 62.4 19 0.0004 30.8 5.4 93 69-166 28-125 (210)
39 TIGR00048 radical SAM enzyme, 62.4 83 0.0018 29.3 10.0 89 80-168 219-333 (355)
40 PRK14457 ribosomal RNA large s 60.8 1.4E+02 0.0031 27.6 11.9 94 75-168 211-330 (345)
41 PLN02746 hydroxymethylglutaryl 60.0 1.2E+02 0.0026 28.1 10.6 103 56-163 65-181 (347)
42 COG2022 ThiG Uncharacterized e 59.6 39 0.00084 29.5 6.6 57 53-109 77-133 (262)
43 COG0135 TrpF Phosphoribosylant 59.4 70 0.0015 27.4 8.3 81 70-162 19-103 (208)
44 PRK06015 keto-hydroxyglutarate 58.2 45 0.00097 28.4 6.9 88 57-162 14-102 (201)
45 TIGR01182 eda Entner-Doudoroff 57.5 48 0.001 28.3 7.0 88 57-162 18-106 (204)
46 cd07948 DRE_TIM_HCS Saccharomy 56.1 98 0.0021 27.4 9.0 101 55-163 18-131 (262)
47 COG2102 Predicted ATPases of P 55.0 50 0.0011 28.5 6.6 98 92-229 75-177 (223)
48 TIGR02026 BchE magnesium-proto 54.7 2.1E+02 0.0046 27.8 12.2 103 55-163 221-342 (497)
49 TIGR01228 hutU urocanate hydra 54.6 35 0.00077 33.0 6.1 87 33-134 150-252 (545)
50 PRK04452 acetyl-CoA decarbonyl 54.5 1.8E+02 0.0038 26.8 11.6 94 69-167 85-185 (319)
51 PRK07328 histidinol-phosphatas 54.3 1.5E+02 0.0033 26.0 10.7 99 63-162 95-226 (269)
52 PRK01222 N-(5'-phosphoribosyl) 54.2 97 0.0021 26.4 8.4 74 57-139 12-86 (210)
53 PRK05414 urocanate hydratase; 53.5 40 0.00086 32.8 6.3 85 35-134 161-261 (556)
54 cd07944 DRE_TIM_HOA_like 4-hyd 53.4 99 0.0021 27.4 8.7 105 55-163 16-128 (266)
55 PF01081 Aldolase: KDPG and KH 53.4 52 0.0011 27.9 6.5 60 95-162 46-106 (196)
56 PRK13958 N-(5'-phosphoribosyl) 52.8 54 0.0012 27.9 6.6 74 57-139 10-84 (207)
57 COG2987 HutU Urocanate hydrata 52.5 28 0.00061 33.2 5.0 84 39-137 165-264 (561)
58 cd04728 ThiG Thiazole synthase 52.2 1.7E+02 0.0036 25.8 10.6 74 53-127 70-143 (248)
59 cd00740 MeTr MeTr subgroup of 52.1 1.7E+02 0.0036 25.8 11.2 103 56-165 23-127 (252)
60 TIGR00676 fadh2 5,10-methylene 52.0 1.7E+02 0.0037 25.9 12.2 106 56-171 70-193 (272)
61 PRK14464 ribosomal RNA large s 51.5 1.2E+02 0.0026 28.1 9.1 77 92-168 225-317 (344)
62 PRK00208 thiG thiazole synthas 51.0 1.8E+02 0.0038 25.7 10.7 74 53-127 70-143 (250)
63 cd07939 DRE_TIM_NifV Streptomy 50.8 1.7E+02 0.0037 25.6 10.5 99 55-161 16-127 (259)
64 PRK11613 folP dihydropteroate 50.5 1.1E+02 0.0024 27.5 8.4 100 56-163 35-139 (282)
65 PRK13796 GTPase YqeH; Provisio 50.3 2.1E+02 0.0047 26.6 11.4 106 18-125 73-180 (365)
66 PRK14459 ribosomal RNA large s 50.3 2.2E+02 0.0048 26.7 11.1 89 80-168 242-359 (373)
67 PRK00730 rnpA ribonuclease P; 50.2 98 0.0021 24.7 7.2 62 40-105 47-110 (138)
68 PRK14453 chloramphenicol/florf 49.7 2.2E+02 0.0047 26.4 10.6 94 75-168 203-330 (347)
69 PRK14456 ribosomal RNA large s 49.3 1.4E+02 0.003 28.0 9.2 78 91-168 260-353 (368)
70 PRK02399 hypothetical protein; 48.8 45 0.00098 31.5 5.8 63 61-133 200-276 (406)
71 PRK14462 ribosomal RNA large s 48.5 2.3E+02 0.005 26.4 10.6 77 92-168 246-338 (356)
72 TIGR03597 GTPase_YqeH ribosome 48.2 1.7E+02 0.0038 27.1 9.8 85 39-125 90-174 (360)
73 cd07943 DRE_TIM_HOA 4-hydroxy- 48.1 1.6E+02 0.0034 25.9 9.1 105 55-163 18-131 (263)
74 cd03319 L-Ala-DL-Glu_epimerase 47.7 69 0.0015 29.0 6.9 73 96-169 217-291 (316)
75 PRK01045 ispH 4-hydroxy-3-meth 46.9 1.4E+02 0.0031 27.1 8.6 109 106-261 156-275 (298)
76 PRK09856 fructoselysine 3-epim 46.7 1.1E+02 0.0023 26.8 7.9 21 147-167 93-113 (275)
77 PF11242 DUF2774: Protein of u 46.4 29 0.00063 23.5 3.0 23 216-238 15-37 (63)
78 PF05690 ThiG: Thiazole biosyn 46.3 54 0.0012 28.7 5.5 55 54-108 71-125 (247)
79 COG1751 Uncharacterized conser 45.8 1.7E+02 0.0036 23.9 9.7 78 92-169 12-95 (186)
80 PRK13352 thiamine biosynthesis 45.5 65 0.0014 30.6 6.3 93 95-227 123-221 (431)
81 TIGR01278 DPOR_BchB light-inde 45.5 3E+02 0.0066 26.9 13.3 85 40-131 86-191 (511)
82 COG1151 6Fe-6S prismane cluste 44.7 2E+02 0.0043 28.5 9.6 52 59-113 360-413 (576)
83 cd03315 MLE_like Muconate lact 43.9 2.2E+02 0.0048 24.9 10.1 73 96-169 169-243 (265)
84 cd01948 EAL EAL domain. This d 43.9 1.9E+02 0.0041 24.2 8.8 117 41-163 82-208 (240)
85 PRK06424 transcription factor; 43.8 71 0.0015 25.6 5.6 31 212-242 84-114 (144)
86 cd00308 enolase_like Enolase-s 43.1 2.1E+02 0.0046 24.4 9.8 87 77-169 120-208 (229)
87 PF02401 LYTB: LytB protein; 42.9 98 0.0021 27.8 6.9 116 99-261 146-274 (281)
88 PF06792 UPF0261: Uncharacteri 42.9 57 0.0012 30.9 5.6 112 17-144 141-286 (403)
89 PF00682 HMGL-like: HMGL-like 42.9 1.4E+02 0.003 25.6 7.8 98 56-160 11-124 (237)
90 PLN02363 phosphoribosylanthran 42.6 97 0.0021 27.4 6.8 83 47-140 49-132 (256)
91 PRK12323 DNA polymerase III su 42.1 3.4E+02 0.0075 27.7 11.1 69 56-127 104-174 (700)
92 PRK15108 biotin synthase; Prov 42.1 2.8E+02 0.0061 25.6 12.5 110 56-169 76-196 (345)
93 PRK00499 rnpA ribonuclease P; 41.8 1.2E+02 0.0027 22.9 6.5 64 39-105 38-104 (114)
94 cd06543 GH18_PF-ChiA-like PF-C 41.8 1.5E+02 0.0031 26.9 7.9 51 55-105 86-136 (294)
95 PRK06552 keto-hydroxyglutarate 41.6 1.1E+02 0.0025 26.1 6.9 88 57-162 23-114 (213)
96 PRK01313 rnpA ribonuclease P; 41.4 1.3E+02 0.0029 23.5 6.7 62 40-104 48-113 (129)
97 PF01175 Urocanase: Urocanase; 41.4 78 0.0017 30.8 6.2 92 32-138 148-257 (546)
98 TIGR01290 nifB nitrogenase cof 41.2 3.3E+02 0.0072 26.1 14.6 111 55-169 59-199 (442)
99 PRK03031 rnpA ribonuclease P; 40.6 1.6E+02 0.0034 22.7 7.0 64 40-105 48-114 (122)
100 cd01973 Nitrogenase_VFe_beta_l 39.8 3.5E+02 0.0077 26.0 14.7 90 41-130 89-190 (454)
101 PRK07114 keto-hydroxyglutarate 39.3 1E+02 0.0022 26.6 6.3 88 57-162 25-117 (222)
102 PF00762 Ferrochelatase: Ferro 38.7 1.8E+02 0.0039 26.5 8.1 92 58-168 206-299 (316)
103 TIGR00216 ispH_lytB (E)-4-hydr 38.7 2E+02 0.0042 25.9 8.1 44 215-261 224-273 (280)
104 PRK03459 rnpA ribonuclease P; 38.6 1.5E+02 0.0033 22.9 6.6 64 39-105 48-114 (122)
105 COG0820 Predicted Fe-S-cluster 38.6 3.3E+02 0.0071 25.3 9.8 76 92-168 238-330 (349)
106 cd03322 rpsA The starvation se 38.4 1.6E+02 0.0035 27.2 8.0 83 78-166 190-274 (361)
107 PRK04390 rnpA ribonuclease P; 38.1 1.8E+02 0.004 22.3 7.1 64 40-105 45-110 (120)
108 PRK08195 4-hyroxy-2-oxovalerat 38.1 3.3E+02 0.007 25.1 10.3 104 54-163 20-134 (337)
109 PRK02910 light-independent pro 37.9 4E+02 0.0087 26.1 13.0 83 41-131 87-191 (519)
110 CHL00162 thiG thiamin biosynth 37.5 1.7E+02 0.0036 26.0 7.2 56 53-108 78-139 (267)
111 PRK07003 DNA polymerase III su 37.4 5.1E+02 0.011 27.1 14.3 95 57-159 100-197 (830)
112 PRK12558 glutamyl-tRNA synthet 37.0 1.1E+02 0.0024 29.5 6.6 59 57-124 49-107 (445)
113 cd03316 MR_like Mandelate race 36.1 1.7E+02 0.0036 26.9 7.7 68 96-164 229-298 (357)
114 PRK14460 ribosomal RNA large s 35.1 3.7E+02 0.0081 24.9 10.6 77 92-168 240-332 (354)
115 PRK14463 ribosomal RNA large s 34.9 3.7E+02 0.0081 24.9 10.3 86 92-177 233-340 (349)
116 cd08319 Death_RAIDD Death doma 34.9 29 0.00064 25.0 1.9 67 59-133 10-78 (83)
117 cd03770 SR_TndX_transposase Se 34.4 77 0.0017 24.9 4.4 44 62-105 54-97 (140)
118 PRK07945 hypothetical protein; 34.2 3.7E+02 0.0081 24.7 10.4 82 74-161 191-288 (335)
119 PF03102 NeuB: NeuB family; I 34.1 1.8E+02 0.0039 25.5 7.0 31 232-264 105-135 (241)
120 TIGR00381 cdhD CO dehydrogenas 34.0 4.1E+02 0.0089 25.1 12.2 107 59-169 128-252 (389)
121 TIGR03822 AblA_like_2 lysine-2 33.7 3.7E+02 0.008 24.5 9.6 107 51-161 145-262 (321)
122 PF00356 LacI: Bacterial regul 33.7 64 0.0014 20.3 3.1 42 217-266 2-43 (46)
123 TIGR02090 LEU1_arch isopropylm 33.6 3.4E+02 0.0073 25.2 9.2 99 55-161 18-129 (363)
124 PF14871 GHL6: Hypothetical gl 33.2 46 0.00099 26.2 2.9 26 143-168 43-68 (132)
125 TIGR03822 AblA_like_2 lysine-2 33.1 3.8E+02 0.0082 24.4 11.6 109 58-170 121-240 (321)
126 COG1149 MinD superfamily P-loo 33.0 87 0.0019 28.0 4.8 90 69-169 156-251 (284)
127 PRK12360 4-hydroxy-3-methylbut 32.9 2.5E+02 0.0054 25.3 7.8 44 215-261 225-274 (281)
128 PRK04820 rnpA ribonuclease P; 32.9 2.6E+02 0.0056 22.4 7.4 65 40-106 49-115 (145)
129 TIGR03217 4OH_2_O_val_ald 4-hy 32.6 4E+02 0.0086 24.5 10.6 105 54-163 19-133 (333)
130 COG2185 Sbm Methylmalonyl-CoA 32.4 1.9E+02 0.0041 23.2 6.2 57 110-171 19-77 (143)
131 TIGR03070 couple_hipB transcri 32.3 48 0.001 21.0 2.5 22 215-236 5-26 (58)
132 PRK13803 bifunctional phosphor 32.2 3.4E+02 0.0073 27.3 9.5 96 57-161 12-108 (610)
133 PRK01492 rnpA ribonuclease P; 32.1 2.3E+02 0.0051 21.7 7.1 62 40-103 47-114 (118)
134 PRK14455 ribosomal RNA large s 31.9 3E+02 0.0066 25.5 8.6 77 92-168 245-337 (356)
135 PF02638 DUF187: Glycosyl hydr 31.8 81 0.0018 28.7 4.7 90 143-232 69-161 (311)
136 PF13378 MR_MLE_C: Enolase C-t 31.7 75 0.0016 23.6 3.8 54 114-169 3-57 (111)
137 PRK05571 ribose-5-phosphate is 31.2 2.8E+02 0.0061 22.3 9.0 96 57-164 10-108 (148)
138 TIGR00542 hxl6Piso_put hexulos 30.9 1.8E+02 0.004 25.5 6.8 17 147-163 97-113 (279)
139 TIGR00284 dihydropteroate synt 30.8 5.2E+02 0.011 25.3 11.2 93 59-163 165-257 (499)
140 cd03527 RuBisCO_small Ribulose 30.7 2.3E+02 0.005 21.2 6.2 63 54-116 10-86 (99)
141 TIGR02534 mucon_cyclo muconate 30.5 2E+02 0.0044 26.6 7.3 74 95-169 226-301 (368)
142 cd03318 MLE Muconate Lactonizi 30.5 2.3E+02 0.005 26.2 7.6 74 95-169 227-302 (365)
143 PRK15072 bifunctional D-altron 30.1 3.2E+02 0.007 25.7 8.6 71 95-166 245-317 (404)
144 PF14502 HTH_41: Helix-turn-he 30.0 49 0.0011 21.2 2.1 31 214-244 6-38 (48)
145 PRK10128 2-keto-3-deoxy-L-rham 29.7 2.4E+02 0.0053 25.0 7.2 71 72-144 165-246 (267)
146 TIGR02660 nifV_homocitr homoci 29.6 4.6E+02 0.01 24.3 10.7 99 55-161 19-130 (365)
147 TIGR00188 rnpA ribonuclease P 29.6 2E+02 0.0043 21.4 5.8 61 40-103 42-104 (105)
148 COG1564 THI80 Thiamine pyropho 29.4 1.2E+02 0.0025 26.1 4.9 42 223-264 74-115 (212)
149 PRK14017 galactonate dehydrata 29.2 3E+02 0.0064 25.7 8.1 69 96-165 217-287 (382)
150 PLN02444 HMP-P synthase 29.0 5.9E+02 0.013 25.4 12.6 92 54-169 295-386 (642)
151 TIGR00289 conserved hypothetic 29.0 3.8E+02 0.0082 23.1 11.7 61 215-283 101-170 (222)
152 COG2089 SpsE Sialic acid synth 28.9 1.4E+02 0.0031 27.4 5.5 102 41-169 13-114 (347)
153 PF13407 Peripla_BP_4: Peripla 28.8 2.7E+02 0.0058 23.6 7.4 73 58-137 13-89 (257)
154 PRK14466 ribosomal RNA large s 28.8 4.8E+02 0.01 24.2 9.7 90 79-168 210-325 (345)
155 COG2055 Malate/L-lactate dehyd 28.5 3.7E+02 0.0081 25.0 8.3 89 55-162 5-113 (349)
156 COG0761 lytB 4-Hydroxy-3-methy 28.0 3.7E+02 0.0079 24.3 7.9 44 215-261 228-277 (294)
157 cd00668 Ile_Leu_Val_MetRS_core 27.8 84 0.0018 28.4 4.1 49 58-110 81-131 (312)
158 TIGR02026 BchE magnesium-proto 27.7 5.8E+02 0.012 24.8 12.7 70 92-163 224-303 (497)
159 PF00749 tRNA-synt_1c: tRNA sy 27.6 1.5E+02 0.0032 27.0 5.7 62 57-127 48-110 (314)
160 PLN02775 Probable dihydrodipic 27.6 4.1E+02 0.0088 24.0 8.2 73 63-140 66-138 (286)
161 PF06506 PrpR_N: Propionate ca 27.5 66 0.0014 26.4 3.1 66 92-163 63-131 (176)
162 cd04742 NPD_FabD 2-Nitropropan 27.5 2.7E+02 0.0059 26.6 7.5 67 98-165 30-103 (418)
163 PRK08609 hypothetical protein; 27.2 4.7E+02 0.01 26.0 9.5 81 75-161 430-522 (570)
164 PRK02866 cyanate hydratase; Va 27.1 1.1E+02 0.0024 24.7 4.1 62 216-279 9-70 (147)
165 cd00338 Ser_Recombinase Serine 27.0 1.3E+02 0.0028 23.0 4.6 44 62-105 51-94 (137)
166 COG1678 Putative transcription 26.8 1.3E+02 0.0029 25.3 4.7 72 94-165 117-189 (194)
167 PRK10188 DNA-binding transcrip 26.8 2.3E+02 0.0051 24.5 6.6 86 56-159 21-116 (240)
168 PF08734 GYD: GYD domain; Int 26.8 2.5E+02 0.0054 20.3 6.7 67 59-125 19-90 (91)
169 TIGR00190 thiC thiamine biosyn 26.6 1.4E+02 0.003 28.3 5.2 80 112-227 133-218 (423)
170 PRK08392 hypothetical protein; 26.6 3.9E+02 0.0085 22.5 10.1 82 74-162 86-179 (215)
171 cd08568 GDPD_TmGDE_like Glycer 26.3 3.5E+02 0.0077 22.9 7.6 66 100-165 110-202 (226)
172 COG0673 MviM Predicted dehydro 26.2 2.1E+02 0.0045 25.7 6.5 68 215-284 41-118 (342)
173 PRK10508 hypothetical protein; 26.1 1.2E+02 0.0025 28.0 4.7 41 57-103 287-327 (333)
174 PRK06740 histidinol-phosphatas 26.1 5.1E+02 0.011 23.7 9.6 99 63-162 156-289 (331)
175 PF01402 RHH_1: Ribbon-helix-h 26.1 1.5E+02 0.0031 17.4 4.3 22 212-233 9-30 (39)
176 PRK09726 antitoxin HipB; Provi 25.8 82 0.0018 22.6 3.0 55 214-268 14-68 (88)
177 cd00248 Mth938-like Mth938-lik 25.7 2.2E+02 0.0047 21.4 5.4 52 114-166 37-88 (109)
178 PF05368 NmrA: NmrA-like famil 25.7 3.1E+02 0.0067 23.1 7.1 85 75-169 21-106 (233)
179 PRK14454 ribosomal RNA large s 25.5 5.4E+02 0.012 23.7 10.6 100 79-178 211-342 (342)
180 PF00292 PAX: 'Paired box' dom 25.4 9.7 0.00021 29.8 -2.1 72 212-289 21-97 (125)
181 TIGR01664 DNA-3'-Pase DNA 3'-p 25.3 3.7E+02 0.0079 21.7 8.8 90 41-130 59-157 (166)
182 COG0626 MetC Cystathionine bet 25.3 4.3E+02 0.0092 25.1 8.3 81 92-172 112-194 (396)
183 TIGR01502 B_methylAsp_ase meth 25.2 4.2E+02 0.009 25.2 8.3 70 96-166 281-357 (408)
184 PRK09454 ugpQ cytoplasmic glyc 25.2 4.4E+02 0.0095 22.8 8.1 59 106-164 140-216 (249)
185 COG2089 SpsE Sialic acid synth 25.1 3.8E+02 0.0082 24.8 7.5 75 41-126 148-224 (347)
186 PF13467 RHH_4: Ribbon-helix-h 24.9 85 0.0018 21.7 2.7 26 214-239 23-48 (67)
187 TIGR01378 thi_PPkinase thiamin 24.9 1.5E+02 0.0032 25.1 4.8 39 226-264 72-110 (203)
188 PLN02428 lipoic acid synthase 24.7 5.7E+02 0.012 23.8 9.0 99 66-166 195-323 (349)
189 PRK05718 keto-hydroxyglutarate 24.7 3.3E+02 0.0072 23.3 6.9 88 57-162 25-113 (212)
190 cd03327 MR_like_2 Mandelate ra 24.6 4.4E+02 0.0095 24.1 8.3 69 95-164 210-280 (341)
191 cd01965 Nitrogenase_MoFe_beta_ 24.6 6E+02 0.013 24.0 14.3 92 40-133 82-187 (428)
192 PF03102 NeuB: NeuB family; I 24.5 63 0.0014 28.3 2.5 68 41-119 114-183 (241)
193 PLN02389 biotin synthase 24.3 6E+02 0.013 23.8 10.4 107 56-167 116-236 (379)
194 PRK14470 ribosomal RNA large s 24.3 5.7E+02 0.012 23.6 9.3 77 92-168 230-322 (336)
195 PF01136 Peptidase_U32: Peptid 24.1 4.2E+02 0.0092 22.4 7.7 86 64-166 3-95 (233)
196 COG1104 NifS Cysteine sulfinat 24.1 3.2E+02 0.0068 25.9 7.1 71 93-163 102-177 (386)
197 TIGR00035 asp_race aspartate r 24.0 4.6E+02 0.0099 22.4 8.4 63 57-120 15-88 (229)
198 TIGR01928 menC_lowGC/arch o-su 24.0 2.8E+02 0.006 25.2 6.8 76 94-170 210-287 (324)
199 PRK09284 thiamine biosynthesis 23.7 7.4E+02 0.016 24.7 12.6 92 54-169 290-381 (607)
200 PRK09532 DNA polymerase III su 23.7 1.4E+02 0.0031 31.4 5.3 135 95-238 299-468 (874)
201 PF10668 Phage_terminase: Phag 23.4 76 0.0017 21.4 2.2 17 216-232 24-40 (60)
202 PF01053 Cys_Met_Meta_PP: Cys/ 23.4 3.2E+02 0.007 25.7 7.2 81 92-172 104-186 (386)
203 PRK11267 biopolymer transport 23.0 2.8E+02 0.006 21.8 5.8 56 54-115 79-134 (141)
204 PRK11024 colicin uptake protei 22.9 2.6E+02 0.0055 22.0 5.6 53 56-114 85-137 (141)
205 TIGR00433 bioB biotin syntheta 22.8 5.3E+02 0.012 22.7 11.2 107 56-166 62-180 (296)
206 cd03323 D-glucarate_dehydratas 22.8 2.5E+02 0.0054 26.4 6.4 73 96-169 250-324 (395)
207 PRK00396 rnpA ribonuclease P; 22.7 2.7E+02 0.0059 21.8 5.6 63 40-105 47-112 (130)
208 PRK11840 bifunctional sulfur c 22.6 6.1E+02 0.013 23.4 10.0 74 53-127 144-217 (326)
209 COG0773 MurC UDP-N-acetylmuram 22.6 1.1E+02 0.0023 29.6 3.8 28 221-248 113-141 (459)
210 TIGR01334 modD putative molybd 22.5 5.6E+02 0.012 22.9 8.2 69 96-169 198-268 (277)
211 PF13833 EF-hand_8: EF-hand do 22.4 1.6E+02 0.0035 18.4 3.7 32 253-284 6-38 (54)
212 KOG0059 Lipid exporter ABCA1 a 22.4 5E+02 0.011 27.4 9.0 71 55-127 669-767 (885)
213 PHA02128 hypothetical protein 22.4 3.5E+02 0.0076 20.5 5.8 72 92-163 59-150 (151)
214 PF04263 TPK_catalytic: Thiami 22.3 2.1E+02 0.0046 22.1 4.8 39 226-264 70-108 (123)
215 PRK14469 ribosomal RNA large s 22.1 6.2E+02 0.013 23.2 9.1 77 92-168 234-325 (343)
216 PF07745 Glyco_hydro_53: Glyco 22.0 2.7E+02 0.0058 25.7 6.2 63 209-281 213-278 (332)
217 cd00814 MetRS_core catalytic c 21.9 1.4E+02 0.0031 27.1 4.4 47 58-108 68-114 (319)
218 PRK15408 autoinducer 2-binding 21.9 6.1E+02 0.013 23.1 10.7 86 39-134 22-111 (336)
219 PF00578 AhpC-TSA: AhpC/TSA fa 21.8 3.3E+02 0.0072 20.0 6.9 45 88-132 37-85 (124)
220 COG0677 WecC UDP-N-acetyl-D-ma 21.8 4.4E+02 0.0094 25.2 7.5 109 7-127 93-219 (436)
221 PLN03233 putative glutamate-tR 21.6 1.9E+02 0.004 28.6 5.3 59 57-124 58-116 (523)
222 PF06819 Arc_PepC: Archaeal Pe 21.5 2E+02 0.0043 22.0 4.3 52 57-109 54-105 (110)
223 PLN02907 glutamate-tRNA ligase 21.3 3.3E+02 0.0071 28.1 7.2 60 57-125 260-319 (722)
224 TIGR01428 HAD_type_II 2-haloal 21.2 3.4E+02 0.0073 22.1 6.4 95 61-158 61-163 (198)
225 smart00633 Glyco_10 Glycosyl h 21.2 5.5E+02 0.012 22.3 7.9 104 58-164 102-225 (254)
226 smart00657 RPOL4c DNA-directed 21.1 3.8E+02 0.0083 20.4 7.9 59 214-284 57-115 (118)
227 TIGR01422 phosphonatase phosph 21.0 3.7E+02 0.0079 23.1 6.8 66 92-158 101-171 (253)
228 PRK14332 (dimethylallyl)adenos 21.0 7.5E+02 0.016 23.7 11.4 15 56-70 183-197 (449)
229 CHL00076 chlB photochlorophyll 20.9 8E+02 0.017 24.1 12.9 85 40-130 86-195 (513)
230 PF01301 Glyco_hydro_35: Glyco 20.8 1.7E+02 0.0037 26.7 4.7 42 122-163 31-82 (319)
231 COG3737 Uncharacterized conser 20.7 2.4E+02 0.0051 21.9 4.6 51 117-167 56-106 (127)
232 COG1197 Mfd Transcription-repa 20.6 3.9E+02 0.0085 29.0 7.7 77 39-127 774-850 (1139)
233 TIGR02814 pfaD_fam PfaD family 20.5 4.8E+02 0.01 25.2 7.7 67 98-165 35-108 (444)
234 PF12478 DUF3697: Ubiquitin-as 20.5 80 0.0017 18.4 1.5 21 7-27 11-32 (33)
235 cd00818 IleRS_core catalytic c 20.4 1.3E+02 0.0029 27.6 3.9 47 59-109 87-135 (338)
236 smart00857 Resolvase Resolvase 20.3 2.1E+02 0.0046 22.1 4.7 43 64-106 53-95 (148)
237 PRK00087 4-hydroxy-3-methylbut 20.2 5E+02 0.011 26.3 8.3 44 215-261 222-271 (647)
238 PRK09427 bifunctional indole-3 20.2 3.6E+02 0.0077 26.1 6.9 72 57-140 266-339 (454)
239 COG4381 Mu-like prophage prote 20.1 1.8E+02 0.0039 22.6 3.9 37 214-256 71-107 (135)
240 PLN03228 methylthioalkylmalate 20.1 6.5E+02 0.014 24.7 8.7 103 55-165 102-230 (503)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=1.2e-49 Score=361.31 Aligned_cols=252 Identities=23% Similarity=0.435 Sum_probs=216.8
Q ss_pred ceeeccccccCCC-----ccHHHhhhcC-----CCcEEEEecccCCC--------CCCCHHHHHHHHHHHHhhcCCCccc
Q 022300 17 PITMGLLKISMAS-----SSIEFVERGH-----QSSWISLTKWVPPP--------VKMTSSIVRESIDVSRRRMDVPCLD 78 (299)
Q Consensus 17 ~~~~g~~~~~~ag-----~sE~~lg~~~-----R~~i~I~tK~~~~~--------~~~~~~~i~~~ve~SL~~Lg~d~iD 78 (299)
.++.|++.||+|. .||+++|+++ |++|+|+||++... .+.++++|+++++.||+||||||||
T Consensus 42 A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~ID 121 (316)
T COG0667 42 ALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYID 121 (316)
T ss_pred HHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCcee
Confidence 4788999999864 6999999873 79999999998542 4579999999999999999999999
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHcCCCeeEeeecccccccChhhHHHHHHHHhCC
Q 022300 79 MLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGV 158 (299)
Q Consensus 79 l~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi 158 (299)
||++|+||...+ .++++++|.+|+++||||+||+||++.++++++.....+++++|.+||++++..+.+++++|+++||
T Consensus 122 l~~iH~~d~~~p-~~e~~~aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi 200 (316)
T COG0667 122 LYQLHRPDPETP-IEETLEALDELVREGKIRYIGVSNYSAEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGI 200 (316)
T ss_pred EEEeCCCCCCCC-HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCC
Confidence 999999999888 8999999999999999999999999999999998864579999999999998877789999999999
Q ss_pred eEEEcccccccccCCcccCCCCCCCCCCCCCCC-chhHHHHhhhhhcCCchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 022300 159 KLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNT-PSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYIL 237 (299)
Q Consensus 159 ~v~~~~pl~~G~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~aq~al~~~l 237 (299)
++++|+||++|+|++++... + ...+... ..... ...+....+...+.++|+++|+|++|+||+|++
T Consensus 201 ~~~~~spla~G~Ltgk~~~~----~-~~~r~~~~~~~~~--------~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl 267 (316)
T COG0667 201 GLLAYSPLASGLLTGKYLPG----P-EGSRASELPRFQR--------ELTERGLAILRALEELAKELGATPAQVALAWVL 267 (316)
T ss_pred eEEEecCccccccCCCcCCC----c-chhhccccccchh--------hhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999873 0 1111100 00000 011223456788999999999999999999999
Q ss_pred hCCCCceeeeccCCCCHHHHHHhHhhhcCCCCHHHHHHHHHHHhcCC
Q 022300 238 DQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGK 284 (299)
Q Consensus 238 ~~~~v~~~i~g~~~~~~e~l~enl~a~~~~Lt~e~~~~i~~~~~~~~ 284 (299)
++|.|+++|+|++ +++||++|+++++..|++++++.|++......
T Consensus 268 ~~~~v~~~I~Ga~--~~~qL~en~~A~~~~L~~~~~~~l~~~~~~~~ 312 (316)
T COG0667 268 AQPGVTSPIVGAS--KAEQLEENLAALDIKLSEEELAALDEISAEEP 312 (316)
T ss_pred hCCCCceEeecCC--CHHHHHHHHHHhcCCCCHHHHHHHHHHhhhcc
Confidence 9999999999999 99999999999999999999999998875443
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=1.6e-49 Score=354.76 Aligned_cols=261 Identities=23% Similarity=0.360 Sum_probs=225.7
Q ss_pred ceeeccccccCCC-----ccHHHhhhc------CCCcEEEEecccCC-----CCCCCHHHHHHHHHHHHhhcCCCcccEE
Q 022300 17 PITMGLLKISMAS-----SSIEFVERG------HQSSWISLTKWVPP-----PVKMTSSIVRESIDVSRRRMDVPCLDML 80 (299)
Q Consensus 17 ~~~~g~~~~~~ag-----~sE~~lg~~------~R~~i~I~tK~~~~-----~~~~~~~~i~~~ve~SL~~Lg~d~iDl~ 80 (299)
.++.|+++||+|. .||+++|++ .|++|+|+||++-. +.+.+...+...++.|+++||++|||||
T Consensus 53 a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~ 132 (336)
T KOG1575|consen 53 AYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLL 132 (336)
T ss_pred HHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEE
Confidence 5788999998854 799999986 59999999999743 3677899999999999999999999999
Q ss_pred EEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHc-CCCeeEeeecccccccCh-hhHHHHHHHHhCC
Q 022300 81 QFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRP-QQKMAELCQLTGV 158 (299)
Q Consensus 81 ~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi 158 (299)
++||+|+..+ +++++++|.+++++|||++||+|+++.++++++... .+++.++|++||++.|.. +.++++.|++.||
T Consensus 133 q~Hr~D~~~p-iee~m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi 211 (336)
T KOG1575|consen 133 QVHRWDPMVP-IEETMRALTDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGI 211 (336)
T ss_pred EEcccCCCCC-HHHHHHHHHHHHhcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCc
Confidence 9999999999 999999999999999999999999999999999887 467999999999999995 5569999999999
Q ss_pred eEEEcccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhhcCCchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 022300 159 KLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILD 238 (299)
Q Consensus 159 ~v~~~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~aq~al~~~l~ 238 (299)
++++|+||++|+||+++... ...+++..+... .....++......+.+++++.++|+++|+|++|+||+|+++
T Consensus 212 ~li~ysPL~~G~Ltgk~~~~-e~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~ 284 (336)
T KOG1575|consen 212 GLIAWSPLGRGLLTGKYKLG-EDSRNGDKRFQF------LGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLS 284 (336)
T ss_pred ceEEecccccceeccCcccc-cccccccccccc------cccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999999875 223333222211 11112222224566788999999999999999999999999
Q ss_pred CCCCceeeeccCCCCHHHHHHhHhhhcCCCCHHHHHHHHHHHhcCCCCC
Q 022300 239 QPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGKDLL 287 (299)
Q Consensus 239 ~~~v~~~i~g~~~~~~e~l~enl~a~~~~Lt~e~~~~i~~~~~~~~~~~ 287 (299)
++.|+++|||++ +++||+||++|+...||+++++.|+++......+.
T Consensus 285 ~~~v~~pIpG~s--~ve~l~eni~Al~~~Lt~e~~~~l~~~~~~~~~~~ 331 (336)
T KOG1575|consen 285 NGKVSSPIPGAS--KIEQLKENIGALSVKLTPEEIKELEEIIDKILGFG 331 (336)
T ss_pred hCCCEEecCCCC--cHHHHHHHHhhhhccCCHHHHHHHHHhhccccCcC
Confidence 999999999999 99999999999999999999999999987776543
No 3
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=1.3e-48 Score=342.81 Aligned_cols=221 Identities=22% Similarity=0.316 Sum_probs=196.1
Q ss_pred ceeeccccccCCCc--cHHHhhhc------CCCcEEEEecccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCC
Q 022300 17 PITMGLLKISMASS--SIEFVERG------HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS 88 (299)
Q Consensus 17 ~~~~g~~~~~~ag~--sE~~lg~~------~R~~i~I~tK~~~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~ 88 (299)
.|..|++-+|+|-. +|+.+|++ .|+++||+||+|+. ..+++.+.+++|+||++||+||+|||++|||.+.
T Consensus 37 Al~~Gyr~IDTA~~YgnE~~VG~aI~~s~v~ReelFittKvw~~--~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~ 114 (280)
T COG0656 37 ALELGYRLIDTAEIYGNEEEVGEAIKESGVPREELFITTKVWPS--DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPN 114 (280)
T ss_pred HHHhCcceEecHhHhcCHHHHHHHHHhcCCCHHHeEEEeecCCc--cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCc
Confidence 47778888887652 99999986 48999999999984 4578999999999999999999999999999764
Q ss_pred -CCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHc-CCCeeEeeecccccccChhhHHHHHHHHhCCeEEEcccc
Q 022300 89 -NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 166 (299)
Q Consensus 89 -~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~pl 166 (299)
...+.++|++|++++++|+||+||||||+...++++++. ++.|.++|++||++.+..+ ++++|+++||.+++|+||
T Consensus 115 ~~~~~~etw~alE~l~~~G~ir~IGVSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~e--l~~~~~~~gI~v~AysPL 192 (280)
T COG0656 115 KYVVIEETWKALEELVDEGLIRAIGVSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQPE--LLPFCQRHGIAVEAYSPL 192 (280)
T ss_pred cCccHHHHHHHHHHHHhcCCccEEEeeCCCHHHHHHHHHhcCCCCceEEEEeccCCCcHH--HHHHHHHcCCEEEEECCc
Confidence 111689999999999999999999999999999999998 7889999999999887764 999999999999999999
Q ss_pred cccc-cCCcccCCCCCCCCCCCCCCCchhHHHHhhhhhcCCchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCcee
Q 022300 167 MGGL-LSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGS 245 (299)
Q Consensus 167 ~~G~-L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~aq~al~~~l~~~~v~~~ 245 (299)
++|. |.. .+.+.+||++||.|++|++|+|+++++ ..+
T Consensus 193 ~~g~~l~~----------------------------------------~~~l~~Ia~k~g~t~AQv~L~W~i~~g--v~~ 230 (280)
T COG0656 193 AKGGKLLD----------------------------------------NPVLAEIAKKYGKTPAQVALRWHIQRG--VIV 230 (280)
T ss_pred cccccccc----------------------------------------ChHHHHHHHHhCCCHHHHHHHHHHhCC--cEE
Confidence 9653 211 278999999999999999999999999 457
Q ss_pred eeccCCCCHHHHHHhHhhhcCCCCHHHHHHHHHHHhcCCC
Q 022300 246 MIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGKD 285 (299)
Q Consensus 246 i~g~~~~~~e~l~enl~a~~~~Lt~e~~~~i~~~~~~~~~ 285 (299)
||.++ +++|+++|++++++.||+|||+.|+++......
T Consensus 231 Ipks~--~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~~ 268 (280)
T COG0656 231 IPKST--TPERIRENLAAFDFELSEEDMAAIDALDRGYGR 268 (280)
T ss_pred ecCCC--CHHHHHHHHhhhcCCCCHHHHHHHHhhccccCc
Confidence 99999 999999999999999999999999999776643
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=7.9e-47 Score=344.63 Aligned_cols=253 Identities=18% Similarity=0.249 Sum_probs=206.4
Q ss_pred ceeeccccccCC-----CccHHHhhhc------CCCcEEEEecccCC-----CCCCCHHHHHHHHHHHHhhcCCCcccEE
Q 022300 17 PITMGLLKISMA-----SSSIEFVERG------HQSSWISLTKWVPP-----PVKMTSSIVRESIDVSRRRMDVPCLDML 80 (299)
Q Consensus 17 ~~~~g~~~~~~a-----g~sE~~lg~~------~R~~i~I~tK~~~~-----~~~~~~~~i~~~ve~SL~~Lg~d~iDl~ 80 (299)
.++.|++.||+| |.||+++|++ .|++++|+||++.. ..+++++.+++++++||++|||||||+|
T Consensus 38 al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~ 117 (317)
T TIGR01293 38 AYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIV 117 (317)
T ss_pred HHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEE
Confidence 367899999986 4799999986 38899999998532 1346899999999999999999999999
Q ss_pred EEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHc----C-CCeeEeeecccccccCh-hhHHHHHHH
Q 022300 81 QFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN----G-IPVVSNQVQHSVVDMRP-QQKMAELCQ 154 (299)
Q Consensus 81 ~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~----~-~~~~~~q~~~n~~~~~~-~~~~~~~~~ 154 (299)
++|+|+...+ +++++++|++|+++||||+||+|||+.+++.++... + ++++++|++||++++.. +..++++|+
T Consensus 118 ~lH~~~~~~~-~~e~~~aL~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~ 196 (317)
T TIGR01293 118 FANRPDPNTP-MEETVRAMTYVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYH 196 (317)
T ss_pred EeccCCCCCC-HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHH
Confidence 9999998777 899999999999999999999999999998776543 2 57899999999999874 667999999
Q ss_pred HhCCeEEEcccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhhcCCc--hHHHHHHHHHHHHHHHhCCCHHHHH
Q 022300 155 LTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGW--SQFQVLLQTLKRIASKHGVSIPVVA 232 (299)
Q Consensus 155 ~~gi~v~~~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~la~~~~~s~aq~a 232 (299)
++||++++|+||++|+|++++... .+... +.......++. ..+... ......++.+.++|+++|+|++|+|
T Consensus 197 ~~gi~v~a~spl~~G~Ltg~~~~~---~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqla 269 (317)
T TIGR01293 197 KIGVGAMTWSPLACGLVSGKYDSG---IPPYS-RATLKGYQWLK---DKILSEEGRRQQARLKDLQAIAERLGCTLPQLA 269 (317)
T ss_pred HcCCeEEEeccccccccCCCCCCC---CCCcc-cccccccchhh---hhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 999999999999999999988643 11111 00000000110 000000 1123456789999999999999999
Q ss_pred HHHHHhCCCCceeeeccCCCCHHHHHHhHhhhcC--CCCHHHHHHHHHH
Q 022300 233 VRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFML--SLDEDDVNSIQEV 279 (299)
Q Consensus 233 l~~~l~~~~v~~~i~g~~~~~~e~l~enl~a~~~--~Lt~e~~~~i~~~ 279 (299)
|+|++++|+|+++|+|++ +++||++|+++++. +||+++++.|+++
T Consensus 270 l~w~l~~~~v~~~i~G~~--~~~ql~en~~a~~~~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 270 IAWCLRNEGVSSVLLGAS--SAEQLMENLGSLQVLPKLSSSIIHEIDSI 316 (317)
T ss_pred HHHHhcCCCCeEEEeCCC--CHHHHHHHHHHhhccCCCCHHHHHHHHhh
Confidence 999999999999999999 99999999999987 9999999999875
No 5
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1.1e-46 Score=347.33 Aligned_cols=257 Identities=20% Similarity=0.293 Sum_probs=209.6
Q ss_pred ceeeccccccCC-------CccHHHhhhcC-------CCcEEEEecccCC------CCCCCHHHHHHHHHHHHhhcCCCc
Q 022300 17 PITMGLLKISMA-------SSSIEFVERGH-------QSSWISLTKWVPP------PVKMTSSIVRESIDVSRRRMDVPC 76 (299)
Q Consensus 17 ~~~~g~~~~~~a-------g~sE~~lg~~~-------R~~i~I~tK~~~~------~~~~~~~~i~~~ve~SL~~Lg~d~ 76 (299)
.++.|++.||+| |.||+++|+++ |++++|+||+|.. ....+++.+++++++||++||+||
T Consensus 52 A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~ 131 (346)
T PRK09912 52 AFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEY 131 (346)
T ss_pred HHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccCCCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCc
Confidence 467899999987 46999999863 7899999998631 123579999999999999999999
Q ss_pred ccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHc----CCCeeEeeecccccccChh-hHHHH
Q 022300 77 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN----GIPVVSNQVQHSVVDMRPQ-QKMAE 151 (299)
Q Consensus 77 iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~----~~~~~~~q~~~n~~~~~~~-~~~~~ 151 (299)
||+|++|+|+...+ +++++++|++|+++|||++||+|||+.++++++.+. ++++.++|++||++++..+ .++++
T Consensus 132 iDl~~lH~~~~~~~-~~e~~~al~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~ 210 (346)
T PRK09912 132 VDIFYSHRVDENTP-MEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLD 210 (346)
T ss_pred EEEEEeCCCCCCCC-HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHH
Confidence 99999999988777 899999999999999999999999999998866543 5688999999999998654 46999
Q ss_pred HHHHhCCeEEEcccccccccCCcccCCCCCCCCCCCCCC--CchhHHHHhhhhhcCCchHHHHHHHHHHHHHHHhCCCHH
Q 022300 152 LCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLN--TPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIP 229 (299)
Q Consensus 152 ~~~~~gi~v~~~~pl~~G~L~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~a 229 (299)
+|+++||++++|+||++|+|++++.... +.+ .+.. ......+.. .+. ......+.+.+.++|+++|+|++
T Consensus 211 ~~~~~gI~via~spl~~G~Lt~~~~~~~---~~~-~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~l~~~a~~~g~t~a 282 (346)
T PRK09912 211 TLQNNGVGCIAFTPLAQGLLTGKYLNGI---PQD-SRMHREGNKVRGLTP---KML-TEANLNSLRLLNEMAQQRGQSMA 282 (346)
T ss_pred HHHHcCceEEEehhhcCccccCCCCCCC---CCC-ccccccccchhhhch---hhc-cHHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999885431 110 0000 000001110 000 01123456889999999999999
Q ss_pred HHHHHHHHhCCCCceeeeccCCCCHHHHHHhHhhh-cCCCCHHHHHHHHHHHhcCC
Q 022300 230 VVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF-MLSLDEDDVNSIQEVTKKGK 284 (299)
Q Consensus 230 q~al~~~l~~~~v~~~i~g~~~~~~e~l~enl~a~-~~~Lt~e~~~~i~~~~~~~~ 284 (299)
|+||+|++++|.|+++|+|++ +++||++|++++ +.+|++++++.|++++++..
T Consensus 283 q~AL~w~l~~~~v~~~i~G~~--~~~ql~en~~a~~~~~L~~e~~~~l~~~~~~~~ 336 (346)
T PRK09912 283 QMALSWLLKDERVTSVLIGAS--RAEQLEENVQALNNLTFSTEELAQIDQHIADGE 336 (346)
T ss_pred HHHHHHHHhCCCCeEEEeCCC--CHHHHHHHHhhhcCCCCCHHHHHHHHHhhCccc
Confidence 999999999999999999999 999999999998 47999999999999986654
No 6
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=7e-46 Score=342.29 Aligned_cols=251 Identities=24% Similarity=0.386 Sum_probs=205.7
Q ss_pred eeeccccccCC------------CccHHHhhhcC-----CCcEEEEecccCCC----------CCCCHHHHHHHHHHHHh
Q 022300 18 ITMGLLKISMA------------SSSIEFVERGH-----QSSWISLTKWVPPP----------VKMTSSIVRESIDVSRR 70 (299)
Q Consensus 18 ~~~g~~~~~~a------------g~sE~~lg~~~-----R~~i~I~tK~~~~~----------~~~~~~~i~~~ve~SL~ 70 (299)
++.|++.||+| |.||.++|+++ |++++|+||++... .+++++.+++++++||+
T Consensus 40 l~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~ 119 (346)
T PRK10625 40 VAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKRGSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLK 119 (346)
T ss_pred HHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhcCCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHH
Confidence 56788888876 56999999863 89999999985311 14689999999999999
Q ss_pred hcCCCcccEEEEecCCCC-----------------CCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHc----CC
Q 022300 71 RMDVPCLDMLQFHWWDYS-----------------NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN----GI 129 (299)
Q Consensus 71 ~Lg~d~iDl~~lH~pd~~-----------------~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~----~~ 129 (299)
+||+||||||++|+|+.. .+ ++++|++|++|+++|||++||+|||+.+++++++.. +.
T Consensus 120 rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~-~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~ 198 (346)
T PRK10625 120 RLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS-LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDL 198 (346)
T ss_pred HhCCCeEeEEEeeccCcccccccccccccccccCCCC-HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999752 23 789999999999999999999999999988776542 33
Q ss_pred -CeeEeeecccccccChhhHHHHHHHHhCCeEEEcccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhhcCCch
Q 022300 130 -PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWS 208 (299)
Q Consensus 130 -~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (299)
.+.++|++||++++..+.+++++|+++||++++|+||++|+|++++..... + ...+ +. ....| ..+. ..
T Consensus 199 ~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL~~G~Ltg~~~~~~~--~-~~~~-~~-~~~~~----~~~~-~~ 268 (346)
T PRK10625 199 PRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLAFGTLTGKYLNGAK--P-AGAR-NT-LFSRF----TRYS-GE 268 (346)
T ss_pred CCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccccCeeccCCCCCCCC--C-CCcc-cc-ccccc----cccc-ch
Confidence 588999999999988777899999999999999999999999998765311 1 0000 00 00001 0111 12
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceeeeccCCCCHHHHHHhHhhhcCCCCHHHHHHHHHHHh
Q 022300 209 QFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTK 281 (299)
Q Consensus 209 ~~~~~~~~l~~la~~~~~s~aq~al~~~l~~~~v~~~i~g~~~~~~e~l~enl~a~~~~Lt~e~~~~i~~~~~ 281 (299)
....+.+.+.++|+++|+|++|+||+|++++|.|+++|+|++ +++||++|+++++++||+++++.|+++.+
T Consensus 269 ~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~--~~~~l~en~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 269 QTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGAT--TMEQLKTNIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred hHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCC--CHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 234457889999999999999999999999999999999999 99999999999999999999999999864
No 7
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=7.6e-46 Score=332.91 Aligned_cols=242 Identities=27% Similarity=0.466 Sum_probs=202.6
Q ss_pred ceeeccccccCC-----CccHHHhhhc------CCCcEEEEeccc---CCCCCCCHHHHHHHHHHHHhhcCCCcccEEEE
Q 022300 17 PITMGLLKISMA-----SSSIEFVERG------HQSSWISLTKWV---PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQF 82 (299)
Q Consensus 17 ~~~~g~~~~~~a-----g~sE~~lg~~------~R~~i~I~tK~~---~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~l 82 (299)
.++.|++.||+| |.||+++|++ .|++++|+||+. ......+++.+++++++||++||+||||+|++
T Consensus 26 a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~l 105 (283)
T PF00248_consen 26 ALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGDGKPEPDYSPDSIRESLERSLERLGTDYIDLLLL 105 (283)
T ss_dssp HHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESSSSTGGGSSHHHHHHHHHHHHHHHTSSSEEEEEE
T ss_pred HHHcCCCeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhcccc
Confidence 367899999988 7899999986 489999999992 22356789999999999999999999999999
Q ss_pred ecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHc-CCCeeEeeecccccccChhhHHHHHHHHhCCeEE
Q 022300 83 HWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLI 161 (299)
Q Consensus 83 H~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~ 161 (299)
|+|+.......++|++|++|+++|+||+||||||+++.++.+... .++|+++|++||++++....+++++|+++||+++
T Consensus 106 H~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~ 185 (283)
T PF00248_consen 106 HWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVI 185 (283)
T ss_dssp SSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEE
T ss_pred ccccccccccchhhhhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999988776899999999999999999999999999999999555 6789999999999977777889999999999999
Q ss_pred EcccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhhcCCchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCC
Q 022300 162 TYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPA 241 (299)
Q Consensus 162 ~~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~aq~al~~~l~~~~ 241 (299)
+|+||++|+|++++.....+.++..... .+...+.+.++++++|+|++|+||+|+++++.
T Consensus 186 a~~~l~~G~l~~~~~~~~~~~~~~~~~~--------------------~~~~~~~l~~~a~~~g~s~~q~al~~~l~~~~ 245 (283)
T PF00248_consen 186 AYSPLAGGLLTGKYKSPPPPPSRASLRD--------------------AQELADALRELAEEHGVSPAQLALRWVLSHPG 245 (283)
T ss_dssp EESTTGGGCGGTTTTTTTTSTTTSGSST--------------------HGGGHHHHHHHHHHHTSSHHHHHHHHHHTSHT
T ss_pred cccccccCccccccccCCCcccccccch--------------------hhhhhhhhhhhhhhcccccchhhhhhhhhccc
Confidence 9999999999988876522222111100 22346889999999999999999999999999
Q ss_pred CceeeeccCCCCHHHHHHhHhhhcCCCCHHHHHHHHHHH
Q 022300 242 VAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVT 280 (299)
Q Consensus 242 v~~~i~g~~~~~~e~l~enl~a~~~~Lt~e~~~~i~~~~ 280 (299)
+.++|+|++ +++||++|+++++.+||+++++.|++++
T Consensus 246 ~~~~i~g~~--~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 246 VASVIVGAS--SPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp TEEEEEB-S--SHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred cccccCCCC--CHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 999999999 9999999999999999999999999864
No 8
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=6.1e-44 Score=325.27 Aligned_cols=241 Identities=17% Similarity=0.271 Sum_probs=200.4
Q ss_pred ceeeccccccCC-----CccHHHhhhc------CCCcEEEEecccCC--CCCCCHHHHHHHHHHHHhhcCCCcccEEEEe
Q 022300 17 PITMGLLKISMA-----SSSIEFVERG------HQSSWISLTKWVPP--PVKMTSSIVRESIDVSRRRMDVPCLDMLQFH 83 (299)
Q Consensus 17 ~~~~g~~~~~~a-----g~sE~~lg~~------~R~~i~I~tK~~~~--~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH 83 (299)
.+..|++.||+| |.||.++|++ .|++++|+||+++. ..+++++.+++++++||++||+||||+|++|
T Consensus 40 A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH 119 (314)
T PLN02587 40 AFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCH 119 (314)
T ss_pred HHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEec
Confidence 367899999987 4699999986 38899999999742 2357899999999999999999999999999
Q ss_pred cCCCCCC--cHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHc----CCCeeEeeecccccccChhhHHHHHHHHhC
Q 022300 84 WWDYSNP--GYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN----GIPVVSNQVQHSVVDMRPQQKMAELCQLTG 157 (299)
Q Consensus 84 ~pd~~~~--~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~----~~~~~~~q~~~n~~~~~~~~~~~~~~~~~g 157 (299)
+|+.... .++++|++|++|+++||||+||+|||+.+++..+... .+.+..+|+.||++++.. .+++++|+++|
T Consensus 120 ~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~g 198 (314)
T PLN02587 120 DIEFGSLDQIVNETIPALQKLKESGKVRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKG 198 (314)
T ss_pred CCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcC
Confidence 9975322 2578999999999999999999999999988777653 234566789999877644 47999999999
Q ss_pred CeEEEcccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhhcCCchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 022300 158 VKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYIL 237 (299)
Q Consensus 158 i~v~~~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~aq~al~~~l 237 (299)
|++++|+||++|+|+++.... +. . ..+.+..+.+.+.++|+++++|++|+||+|++
T Consensus 199 i~v~a~spl~~G~L~~~~~~~-----~~---~----------------~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l 254 (314)
T PLN02587 199 VGVISASPLAMGLLTENGPPE-----WH---P----------------APPELKSACAAAATHCKEKGKNISKLALQYSL 254 (314)
T ss_pred ceEEEechhhccccCCCCCCC-----CC---C----------------CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999998864211 00 0 01223455788999999999999999999999
Q ss_pred hCCCCceeeeccCCCCHHHHHHhHhhhcC----CCCHHHHHHHHHHHhcCC
Q 022300 238 DQPAVAGSMIGVRLGLAEHIQDTNAIFML----SLDEDDVNSIQEVTKKGK 284 (299)
Q Consensus 238 ~~~~v~~~i~g~~~~~~e~l~enl~a~~~----~Lt~e~~~~i~~~~~~~~ 284 (299)
++|.|+++|+|++ +++||++|+++++. +|+++++++|+++.....
T Consensus 255 ~~~~v~~~i~G~~--~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~~~~~ 303 (314)
T PLN02587 255 SNKDISTTLVGMN--SVQQVEENVAAATELETSGIDEELLSEVEAILAPVK 303 (314)
T ss_pred hCCCCeeEEecCC--CHHHHHHHHHHHhhcccCCCCHHHHHHHHHhhcccc
Confidence 9999999999999 99999999999763 799999999999875433
No 9
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=2.6e-44 Score=320.51 Aligned_cols=219 Identities=17% Similarity=0.271 Sum_probs=192.3
Q ss_pred ceeeccccccCCCc--cHHHhhhc------CCCcEEEEecccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCC
Q 022300 17 PITMGLLKISMASS--SIEFVERG------HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS 88 (299)
Q Consensus 17 ~~~~g~~~~~~ag~--sE~~lg~~------~R~~i~I~tK~~~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~ 88 (299)
.+..|++.||+|.. +|+.+|++ .|++++|+||+++ ...+++.+++++++||++||+||||+|++|+|++.
T Consensus 25 A~~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~R~~v~i~TK~~~--~~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~ 102 (267)
T PRK11172 25 ALELGYRAIDTAQIYDNEAAVGQAIAESGVPRDELFITTKIWI--DNLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPN 102 (267)
T ss_pred HHHcCCCEEEccchhCCHHHHHHHHHHcCCChhHeEEEEEeCC--CCCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCC
Confidence 36789999998742 79999986 3899999999965 35679999999999999999999999999999764
Q ss_pred --CCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHc-CC-CeeEeeecccccccChhhHHHHHHHHhCCeEEEcc
Q 022300 89 --NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GI-PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 164 (299)
Q Consensus 89 --~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~-~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~ 164 (299)
.+ .+++|++|++|+++||||+||+|||+.+++.++++. +. +++++|++||++++. .+++++|+++||++++|+
T Consensus 103 ~~~~-~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~s 179 (267)
T PRK11172 103 DEVS-VEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYM 179 (267)
T ss_pred CCCC-HHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHhcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEEC
Confidence 34 789999999999999999999999999999988875 33 689999999998864 579999999999999999
Q ss_pred cccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhhcCCchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCce
Q 022300 165 TVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAG 244 (299)
Q Consensus 165 pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~aq~al~~~l~~~~v~~ 244 (299)
||++|.+.. .+.+.++|+++|+|++|+||+|+++++. +
T Consensus 180 pl~~G~~~~----------------------------------------~~~l~~~a~~~~~s~aqval~w~l~~~~--~ 217 (267)
T PRK11172 180 TLAYGKVLK----------------------------------------DPVIARIAAKHNATPAQVILAWAMQLGY--S 217 (267)
T ss_pred CCCCCcccC----------------------------------------CHHHHHHHHHhCCCHHHHHHHHHHhCCC--E
Confidence 999985421 1568899999999999999999999973 4
Q ss_pred eeeccCCCCHHHHHHhHhhhcCCCCHHHHHHHHHHHhcCC
Q 022300 245 SMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGK 284 (299)
Q Consensus 245 ~i~g~~~~~~e~l~enl~a~~~~Lt~e~~~~i~~~~~~~~ 284 (299)
+|+|++ +++||++|+++++++||+++++.|+++.+..+
T Consensus 218 ~i~g~~--~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~~~ 255 (267)
T PRK11172 218 VIPSST--KRENLASNLLAQDLQLDAEDMAAIAALDRNGR 255 (267)
T ss_pred eecCCC--CHHHHHHHHhhcCCCcCHHHHHHHhhhccCCc
Confidence 899999 99999999999999999999999999865433
No 10
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=6.5e-43 Score=314.18 Aligned_cols=233 Identities=29% Similarity=0.521 Sum_probs=205.2
Q ss_pred ceeeccccccCC---C--ccHHHhhhc---C--CCcEEEEecccCCC---CCCCHHHHHHHHHHHHhhcCCCcccEEEEe
Q 022300 17 PITMGLLKISMA---S--SSIEFVERG---H--QSSWISLTKWVPPP---VKMTSSIVRESIDVSRRRMDVPCLDMLQFH 83 (299)
Q Consensus 17 ~~~~g~~~~~~a---g--~sE~~lg~~---~--R~~i~I~tK~~~~~---~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH 83 (299)
.++.|++.||+| | .||+.+|++ . |++++|+||+++.. .+++++.+++++++||++||+||||+|+||
T Consensus 38 A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh 117 (285)
T cd06660 38 ALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLH 117 (285)
T ss_pred HHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEec
Confidence 467888888876 3 499999997 2 89999999998643 247899999999999999999999999999
Q ss_pred cCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHc-CCCeeEeeecccccccChhhHHHHHHHHhCCeEEE
Q 022300 84 WWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 162 (299)
Q Consensus 84 ~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~ 162 (299)
+|+.......++|++|++++++|+||+||+|+|+.+.+.+++.. ..+|+++|++||++++....+++++|+++||++++
T Consensus 118 ~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~ 197 (285)
T cd06660 118 WPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIA 197 (285)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEE
Confidence 99876655789999999999999999999999999999999886 47899999999999988766799999999999999
Q ss_pred cccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhhcCCchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCC
Q 022300 163 YGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAV 242 (299)
Q Consensus 163 ~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~aq~al~~~l~~~~v 242 (299)
|+||++|.|+++........ .......+..++.+++.+++|+||+|++++|.+
T Consensus 198 ~~~l~~g~l~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~ 250 (285)
T cd06660 198 YSPLAGGLLTGKYLPGAPPP---------------------------EGDLLEALKEIAEKHGVTPAQVALRWLLQQPGV 250 (285)
T ss_pred eccccCceecCCCCCCCCCC---------------------------hhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCC
Confidence 99999999987655431000 001247899999999999999999999999999
Q ss_pred ceeeeccCCCCHHHHHHhHhhhcCCCCHHHHHHHHH
Q 022300 243 AGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQE 278 (299)
Q Consensus 243 ~~~i~g~~~~~~e~l~enl~a~~~~Lt~e~~~~i~~ 278 (299)
+++|+|++ +++||++|+++...+||+++++.|++
T Consensus 251 ~~~i~g~~--~~~~l~~n~~~~~~~L~~~~~~~l~~ 284 (285)
T cd06660 251 TSVIPGAS--SPERLEENLAALDFELSDEDLAALDA 284 (285)
T ss_pred eEEEeCCC--CHHHHHHHHhhccCCCCHHHHHHHhh
Confidence 99999999 99999999999999999999999875
No 11
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=2.2e-43 Score=309.90 Aligned_cols=224 Identities=19% Similarity=0.330 Sum_probs=193.6
Q ss_pred ceeeccccccCCCc--cHHHhhhc----------CCCcEEEEecccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEec
Q 022300 17 PITMGLLKISMASS--SIEFVERG----------HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHW 84 (299)
Q Consensus 17 ~~~~g~~~~~~ag~--sE~~lg~~----------~R~~i~I~tK~~~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~ 84 (299)
.|..|..-||+|-. .|+.+|++ .|+++||+||+|+. ...++.++.++++||++||+||+|||++||
T Consensus 37 Al~~GYRHIDtA~~Y~NE~evG~aik~~i~~~~v~RediFiTSKlw~~--~~~~~~v~~al~~sLk~L~ldYvDLyLiH~ 114 (300)
T KOG1577|consen 37 AIKAGYRHIDTAHVYGNEKEVGEAIKELLAEGGVKREDIFITSKLWPT--DHAPELVEKALEKSLKKLQLDYVDLYLIHW 114 (300)
T ss_pred HHHhCcceeechhhhCChHHHHHHHHHHhhhCCcchhhheeeeccCcc--ccChhhHHHHHHHHHHHhChhhhheeeEec
Confidence 57788888888873 88888876 49999999999984 357999999999999999999999999999
Q ss_pred CCCC---------------CCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHc-CCCeeEeeecccccccChhhH
Q 022300 85 WDYS---------------NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQK 148 (299)
Q Consensus 85 pd~~---------------~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~ 148 (299)
|-.. ..+..++|++||++++.|++|+||||||+..++++++.. .++|.++|+++++. ..+.+
T Consensus 115 P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~--~~Q~~ 192 (300)
T KOG1577|consen 115 PVAFKDSFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPY--LQQKK 192 (300)
T ss_pred ccccCCCCCcccccccccccchHHHHHHHHHHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCC--cChHH
Confidence 9654 113678999999999999999999999999999999998 78999999999994 44567
Q ss_pred HHHHHHHhCCeEEEcccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhhcCCchHHHHHHHHHHHHHHHhCCCH
Q 022300 149 MAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSI 228 (299)
Q Consensus 149 ~~~~~~~~gi~v~~~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~ 228 (299)
++++|+++||.|.||+||+++-- ++ +.++ .+.+.+||++|+.|+
T Consensus 193 L~~fCk~~~I~v~AYSpLg~~~~-~~---------------------------------~ll~--~~~l~~iA~K~~kt~ 236 (300)
T KOG1577|consen 193 LVEFCKSKGIVVTAYSPLGSPGR-GS---------------------------------DLLE--DPVLKEIAKKYNKTP 236 (300)
T ss_pred HHHHHhhCCcEEEEecCCCCCCC-cc---------------------------------cccc--CHHHHHHHHHhCCCH
Confidence 99999999999999999987621 00 1122 288999999999999
Q ss_pred HHHHHHHHHhCCCCceeeeccCCCCHHHHHHhHhhhcCCCCHHHHHHHHHHHhcCC
Q 022300 229 PVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGK 284 (299)
Q Consensus 229 aq~al~~~l~~~~v~~~i~g~~~~~~e~l~enl~a~~~~Lt~e~~~~i~~~~~~~~ 284 (299)
||++|||+++++ .++||.++ +++||+||++++++.||+||++.|+..-...+
T Consensus 237 aQIlLrw~~q~g--~~vipKS~--~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~~r 288 (300)
T KOG1577|consen 237 AQILLRWALQRG--VSVIPKSS--NPERIKENFKVFDFELTEEDMKKLDSLNSNER 288 (300)
T ss_pred HHHHHHHHHhCC--cEEEeccC--CHHHHHHHHhhccccCCHHHHHHHhhccccce
Confidence 999999999999 44788888 99999999999999999999999997644443
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=2e-42 Score=311.80 Aligned_cols=222 Identities=14% Similarity=0.227 Sum_probs=191.5
Q ss_pred ceeeccccccCC-----CccHHHhhhc---CCCcEEEEecccCC-------CCCCCHHHHHHHHHHHHhhcCCCcccEEE
Q 022300 17 PITMGLLKISMA-----SSSIEFVERG---HQSSWISLTKWVPP-------PVKMTSSIVRESIDVSRRRMDVPCLDMLQ 81 (299)
Q Consensus 17 ~~~~g~~~~~~a-----g~sE~~lg~~---~R~~i~I~tK~~~~-------~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~ 81 (299)
.++.|++.||+| |.+|+++|++ .|++++|+||++.. ....+++.+++++++||++|||||||+|+
T Consensus 49 A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~~R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~ 128 (290)
T PRK10376 49 AVALGVNHIDTSDFYGPHVTNQLIREALHPYPDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVN 128 (290)
T ss_pred HHHcCCCeEEChhhcCCCcHHHHHHHHHhcCCCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 477899999987 5689999987 49999999998631 23568999999999999999999999999
Q ss_pred EecCCC----CCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHcCCCeeEeeecccccccChhhHHHHHHHHhC
Q 022300 82 FHWWDY----SNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTG 157 (299)
Q Consensus 82 lH~pd~----~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~g 157 (299)
+|+++. ......++|++|++|+++||||+||+|||+.++++++.+. .+++++|++||++++.. .+++++|+++|
T Consensus 129 ~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~-~~~~~~~~~~g 206 (290)
T PRK10376 129 LRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRHIGLSNVTPTQVAEARKI-AEIVCVQNHYNLAHRAD-DALIDALARDG 206 (290)
T ss_pred EeccCCCCCCCCCCHHHHHHHHHHHHHCCceeEEEecCCCHHHHHHHHhh-CCeEEEecccCCCcCCh-HHHHHHHHHcC
Confidence 988521 1123789999999999999999999999999999998875 46899999999998764 46999999999
Q ss_pred CeEEEcccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhhcCCchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 022300 158 VKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYIL 237 (299)
Q Consensus 158 i~v~~~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~aq~al~~~l 237 (299)
|++++|+||+++.. . ..+.+.++|+++|+|++|+||+|++
T Consensus 207 i~v~a~~pL~g~~~--------------------------------------~--~~~~l~~ia~~~~~t~aq~al~w~l 246 (290)
T PRK10376 207 IAYVPFFPLGGFTP--------------------------------------L--QSSTLSDVAASLGATPMQVALAWLL 246 (290)
T ss_pred CEEEEeecCCCCCh--------------------------------------h--hhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999974310 0 0267899999999999999999999
Q ss_pred hCCCCceeeeccCCCCHHHHHHhHhhhcCCCCHHHHHHHHHHHhc
Q 022300 238 DQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKK 282 (299)
Q Consensus 238 ~~~~v~~~i~g~~~~~~e~l~enl~a~~~~Lt~e~~~~i~~~~~~ 282 (299)
+++.+.++|+|++ +++||++|+++++++|++++++.|+++.+.
T Consensus 247 ~~~~~~~~i~G~~--~~~~l~en~~a~~~~L~~e~~~~l~~~~~~ 289 (290)
T PRK10376 247 QRSPNILLIPGTS--SVAHLRENLAAAELVLSEEVLAELDGIARE 289 (290)
T ss_pred hCCCCeeEeeCCC--CHHHHHHHHhhccCCCCHHHHHHHHHHHhc
Confidence 9877778999999 999999999999999999999999998653
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=6.3e-42 Score=308.40 Aligned_cols=230 Identities=16% Similarity=0.124 Sum_probs=190.7
Q ss_pred ceeeccccccCC---CccHHHhhhcC----CCcEEEEecccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCC-
Q 022300 17 PITMGLLKISMA---SSSIEFVERGH----QSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS- 88 (299)
Q Consensus 17 ~~~~g~~~~~~a---g~sE~~lg~~~----R~~i~I~tK~~~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~- 88 (299)
.+..|++.||+| |.||+++|++. |++++|+||.. ..+++.+++++++||++||+||||+|++|+|+..
T Consensus 41 A~~~Gin~~DTA~~YG~SE~~lG~al~~~~~~~~~i~tk~~----~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~ 116 (292)
T PRK14863 41 AARAGLSVLDASGLFGRAETVLGQLIPRPVPFRVTLSTVRA----DRGPDFVEAEARASLRRMGVERADAILVHSPTELF 116 (292)
T ss_pred HHHcCCCEEecchhhhhHHHHHhhhhccCCceEeecccccc----cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhc
Confidence 367899999998 78999999974 24688888852 3468999999999999999999999999999753
Q ss_pred CCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHcCCCeeEeeecccccccChh-hHHHHHHHHhCCeEEEccccc
Q 022300 89 NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQ-QKMAELCQLTGVKLITYGTVM 167 (299)
Q Consensus 89 ~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~~~~pl~ 167 (299)
.+..++++++|++|+++||||+||+|||+++++..+... .+|+++|++||++++..+ .+++++|+++||++++|+||+
T Consensus 117 ~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~~-~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~ 195 (292)
T PRK14863 117 GPHGAALWERLQALKDQGLFAKIGVSAHASDDPVGVARR-FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFL 195 (292)
T ss_pred CcchHHHHHHHHHHHHcCCcceEeeeccCHHHHHHHHhc-CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhh
Confidence 332368899999999999999999999999998887654 689999999999998754 469999999999999999999
Q ss_pred ccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhhcCCchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceeee
Q 022300 168 GGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMI 247 (299)
Q Consensus 168 ~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~aq~al~~~l~~~~v~~~i~ 247 (299)
+|+|++.... .+ ..+. + ....+..+.+++++.++|++|+||+|++++|.|+++|+
T Consensus 196 ~G~L~~~~~~----~~-----------~~~~---------~-~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~ 250 (292)
T PRK14863 196 NGLLFLPPDR----VP-----------AQLK---------G-ASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLV 250 (292)
T ss_pred CccccCCccc----Cc-----------cchh---------h-hhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEE
Confidence 9999642110 00 0010 0 11234667778888899999999999999999999999
Q ss_pred ccCCCCHHHHHHhHhhhcCCCCHHHHHHHHH
Q 022300 248 GVRLGLAEHIQDTNAIFMLSLDEDDVNSIQE 278 (299)
Q Consensus 248 g~~~~~~e~l~enl~a~~~~Lt~e~~~~i~~ 278 (299)
|++ +++||++|+++.+.+++++.+++|.-
T Consensus 251 G~~--~~~ql~~n~~a~~~~~~~~~~~~l~~ 279 (292)
T PRK14863 251 GVN--SAAELSAVVAAASSPPPDLDWDDMAI 279 (292)
T ss_pred ecC--CHHHHHHHHHHHhcCCCccchhhccC
Confidence 999 99999999999998999988877653
No 14
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=2e-41 Score=303.03 Aligned_cols=217 Identities=20% Similarity=0.340 Sum_probs=189.1
Q ss_pred eeeccccccCCCc--cHHHhhhc------CCCcEEEEecccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCC
Q 022300 18 ITMGLLKISMASS--SIEFVERG------HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN 89 (299)
Q Consensus 18 ~~~g~~~~~~ag~--sE~~lg~~------~R~~i~I~tK~~~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~ 89 (299)
+..|++.||+|.. +|+.+|++ .|++++|+||+++ .+++.+++++++||++||+||||+|++|+|+...
T Consensus 38 ~~~Gi~~~DTA~~Yg~E~~lG~al~~~~~~R~~~~i~tK~~~----~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~ 113 (275)
T PRK11565 38 LEVGYRSIDTAAIYKNEEGVGKALKEASVAREELFITTKLWN----DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAI 113 (275)
T ss_pred HHhCCCEEEchhhhCCHHHHHHHHHHcCCCHHHEEEEEEecC----cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCc
Confidence 6678888998753 79999986 3789999999964 3578999999999999999999999999998755
Q ss_pred CcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHc-CCCeeEeeecccccccChhhHHHHHHHHhCCeEEEcccccc
Q 022300 90 PGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMG 168 (299)
Q Consensus 90 ~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~pl~~ 168 (299)
..+.++|++|++|+++|+||+||+|||+.+++.+++.. ++++.++|++||++.+. .+++++|+++||++++|+||++
T Consensus 114 ~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~ 191 (275)
T PRK11565 114 DHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQ 191 (275)
T ss_pred CcHHHHHHHHHHHHHcCCeeEEeeccCCHHHHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCC
Confidence 44789999999999999999999999999999998765 67799999999998764 5799999999999999999987
Q ss_pred cccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhhcCCchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceeeec
Q 022300 169 GLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIG 248 (299)
Q Consensus 169 G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~aq~al~~~l~~~~v~~~i~g 248 (299)
|.- ..+ . .+.+.++|+++|+|++|+||+|+++++.+ +|+|
T Consensus 192 G~~-~~~-~------------------------------------~~~l~~ia~~~g~s~aq~aL~w~l~~~~~--~I~g 231 (275)
T PRK11565 192 GGK-GVF-D------------------------------------QKVIRDLADKYGKTPAQIVIRWHLDSGLV--VIPK 231 (275)
T ss_pred CCc-ccc-c------------------------------------CHHHHHHHHHhCCCHHHHHHHHHHcCCCE--eeCC
Confidence 721 000 0 16789999999999999999999999743 7999
Q ss_pred cCCCCHHHHHHhHhhhcCCCCHHHHHHHHHHHhc
Q 022300 249 VRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKK 282 (299)
Q Consensus 249 ~~~~~~e~l~enl~a~~~~Lt~e~~~~i~~~~~~ 282 (299)
++ +++||++|+++++++||++++++|+++...
T Consensus 232 ~~--~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~ 263 (275)
T PRK11565 232 SV--TPSRIAENFDVFDFRLDKDELGEIAKLDQG 263 (275)
T ss_pred CC--CHHHHHHHHhccCCCcCHHHHHHHHhhccc
Confidence 99 999999999999999999999999998643
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.4e-41 Score=287.12 Aligned_cols=232 Identities=22% Similarity=0.300 Sum_probs=206.1
Q ss_pred ceeeccccccCCC-----ccHHHhhhc------CCCcEEEEecccC----------CCCCCCHHHHHHHHHHHHhhcCCC
Q 022300 17 PITMGLLKISMAS-----SSIEFVERG------HQSSWISLTKWVP----------PPVKMTSSIVRESIDVSRRRMDVP 75 (299)
Q Consensus 17 ~~~~g~~~~~~ag-----~sE~~lg~~------~R~~i~I~tK~~~----------~~~~~~~~~i~~~ve~SL~~Lg~d 75 (299)
-++.||++||-|. ..|+++|.+ +||++.|+||+|- ...++|.++|..++|+||++|+||
T Consensus 40 ~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lRekieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tD 119 (298)
T COG4989 40 ALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTD 119 (298)
T ss_pred HHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhheEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccc
Confidence 4788999998764 699999987 5999999999982 134779999999999999999999
Q ss_pred cccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHc-CCCeeEeeecccccccCh-hhHHHHHH
Q 022300 76 CLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRP-QQKMAELC 153 (299)
Q Consensus 76 ~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~-~~~~~~~~ 153 (299)
|+|+++||+||+-.+ -+++-+||..|++.||||++|||||++.++.-+.+. ..+...||+++|+++... .+..+++|
T Consensus 120 ylD~LLiHRPDpLmd-~eeVAeAf~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~ 198 (298)
T COG4989 120 YLDLLLIHRPDPLMD-AEEVAEAFTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYC 198 (298)
T ss_pred hhhhhhccCCcccCC-HHHHHHHHHHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHH
Confidence 999999999999888 899999999999999999999999999999988887 567999999999988654 45699999
Q ss_pred HHhCCeEEEcccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhhcCCchHHHHHHHHHHHHHHHhC-CCHHHHH
Q 022300 154 QLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHG-VSIPVVA 232 (299)
Q Consensus 154 ~~~gi~v~~~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~-~s~aq~a 232 (299)
+++.|..++||||++|.+. .. ....+.+..++..+|+++| .|..+++
T Consensus 199 q~~~v~pmaWSpl~gG~~F---~g-----------------------------~~~~q~l~~~l~~ia~e~ga~s~~~Va 246 (298)
T COG4989 199 QQLRVRPMAWSPLGGGGLF---LG-----------------------------DDKFQRLRKVLDRIAEEYGAVSITAVA 246 (298)
T ss_pred HHcCCCcccccccCCCccc---cC-----------------------------CcchHHHHHHHHHHHHHhCcccHHHHH
Confidence 9999999999999998542 21 1235677899999999999 7999999
Q ss_pred HHHHHhCCCCceeeeccCCCCHHHHHHhHhhhcCCCCHHHHHHHHHHHhcC
Q 022300 233 VRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKG 283 (299)
Q Consensus 233 l~~~l~~~~v~~~i~g~~~~~~e~l~enl~a~~~~Lt~e~~~~i~~~~~~~ 283 (299)
++|++.+|.-..+|+|+. ++++|++.+++++..||.+++-+|..+...+
T Consensus 247 iAWllR~Pa~~~PiiGt~--~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~G~ 295 (298)
T COG4989 247 IAWLLRHPAKPQPIIGTG--NLERIRAAIKALSLTLTRQQWFEIYTAAIGN 295 (298)
T ss_pred HHHHHhCcCcccceecCC--CHHHHHHHHHHhhccccHHHHHHHHHHhccC
Confidence 999999999999999999 9999999999999999999999998875443
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=2.9e-37 Score=274.32 Aligned_cols=225 Identities=19% Similarity=0.240 Sum_probs=192.1
Q ss_pred ceeeccccccCC-----CccHHHhhhc----CCCcEEEEecccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCC
Q 022300 17 PITMGLLKISMA-----SSSIEFVERG----HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY 87 (299)
Q Consensus 17 ~~~~g~~~~~~a-----g~sE~~lg~~----~R~~i~I~tK~~~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~ 87 (299)
.|+.|++++|+| |.||..+|++ .|++++++||+.. ..--+.+.+++-++++|++||+||+|+|+||....
T Consensus 43 aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~LaTKlp~-~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~ 121 (391)
T COG1453 43 AIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKLATKLPS-WPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNT 121 (391)
T ss_pred HHHcCCceEeecccccCCCchHHHHHHhhhcccceEEEEeecCC-ccccCHHHHHHHHHHHHHHhCCchhhhhhhccccH
Confidence 588999999986 7899999997 4999999999953 22347899999999999999999999999999876
Q ss_pred CCCc-H--HHHHHHHHHHHHcCcccEEEecCCCH-HHHHHHHHcCCCeeEeeecccccccChhh--HHHHHHHHhCCeEE
Q 022300 88 SNPG-Y--LDALNHLTDLKEEGKIKTVALTNFDT-ERLRIILENGIPVVSNQVQHSVVDMRPQQ--KMAELCQLTGVKLI 161 (299)
Q Consensus 88 ~~~~-~--~~~~~~L~~l~~~Gkir~iGvs~~~~-~~l~~~~~~~~~~~~~q~~~n~~~~~~~~--~~~~~~~~~gi~v~ 161 (299)
.... . .++++++++++++|+||++|+|.|+. +.+.+++.. .+++++|++||.++..... +.+++|.++|++|+
T Consensus 122 e~~~k~~~~g~~df~~kak~eGkIr~~GFSfHgs~e~~~~iv~a-~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~ 200 (391)
T COG1453 122 ETWEKIERLGVFDFLEKAKAEGKIRNAGFSFHGSTEVFKEIVDA-YPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIF 200 (391)
T ss_pred HHHHHHHccChHHHHHHHHhcCcEEEeeecCCCCHHHHHHHHhc-CCcceEEeeeeeeccchhcccHHHHHHHhCCCcEE
Confidence 4331 1 25799999999999999999999964 677888876 5699999999999877653 78999999999999
Q ss_pred EcccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhhcCCchHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHhC
Q 022300 162 TYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHG--VSIPVVAVRYILDQ 239 (299)
Q Consensus 162 ~~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~--~s~aq~al~~~l~~ 239 (299)
.++|+.+|.|..+.. +.+.+|++++. .||+..|+||++++
T Consensus 201 IMeP~~gG~l~~~vP--------------------------------------~~~~~l~~~~~~~~sP~~wa~R~~~sh 242 (391)
T COG1453 201 IMEPLDGGGLLYNVP--------------------------------------EKLEELCRPASPKRSPAEWALRYLLSH 242 (391)
T ss_pred EEeeCCCCCcccCCC--------------------------------------HHHHHHHHhcCCCCCcHHHHHHHHhcC
Confidence 999999997753211 67888888876 58999999999999
Q ss_pred CCCceeeeccCCCCHHHHHHhHhhhcC--C-CCHHHHHHHHHHHhcC
Q 022300 240 PAVAGSMIGVRLGLAEHIQDTNAIFML--S-LDEDDVNSIQEVTKKG 283 (299)
Q Consensus 240 ~~v~~~i~g~~~~~~e~l~enl~a~~~--~-Lt~e~~~~i~~~~~~~ 283 (299)
|.|+++++|++ +++||+||++.++. + ||++|+..|.++.+..
T Consensus 243 p~V~~vlsGm~--~~~~l~enLk~~~~~~p~lte~e~~il~~v~~~~ 287 (391)
T COG1453 243 PEVTTVLSGMN--TPEQLEENLKIASELEPSLTEEELQILEKVEEIY 287 (391)
T ss_pred CCeEEEecCCC--CHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHH
Confidence 99999999999 99999999998864 3 9999988887765444
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=4e-34 Score=243.62 Aligned_cols=252 Identities=19% Similarity=0.229 Sum_probs=202.9
Q ss_pred ceeeccccccCCC-----ccHHHhhhc----CCCcEEEEecccCC------CCCCCHHHHHHHHHHHHhhcCCCcccEEE
Q 022300 17 PITMGLLKISMAS-----SSIEFVERG----HQSSWISLTKWVPP------PVKMTSSIVRESIDVSRRRMDVPCLDMLQ 81 (299)
Q Consensus 17 ~~~~g~~~~~~ag-----~sE~~lg~~----~R~~i~I~tK~~~~------~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~ 81 (299)
.+..|||++|++. .||+.+|.+ +|+..||+||+|.- ..+++++.+++++++||++|++||+|+++
T Consensus 63 A~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilq 142 (342)
T KOG1576|consen 63 AFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQ 142 (342)
T ss_pred HHHccccceecCcccCcchhHHHHHHHHhhCChhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEE
Confidence 4668999999865 699999976 59999999999852 25789999999999999999999999999
Q ss_pred EecCCCC---CCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHcC---CCeeEeeecccccccChhhHHHHHHHH
Q 022300 82 FHWWDYS---NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG---IPVVSNQVQHSVVDMRPQQKMAELCQL 155 (299)
Q Consensus 82 lH~pd~~---~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~---~~~~~~q~~~n~~~~~~~~~~~~~~~~ 155 (299)
+|..+.. ...+.|++.+|+++|++||||+||++.++.+.+...++.+ +......++|++.+.. ....+++.+.
T Consensus 143 iHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~t-Ll~~~~~~~s 221 (342)
T KOG1576|consen 143 IHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNT-LLRYLKRLKS 221 (342)
T ss_pred eecccccccccHHHHHHHHHHHHHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHH-HHHHHHHHHh
Confidence 9988755 2235799999999999999999999999999999998872 2344445888886543 3467888899
Q ss_pred hCCeEEEcccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhhcCCchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Q 022300 156 TGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRY 235 (299)
Q Consensus 156 ~gi~v~~~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~aq~al~~ 235 (299)
+|++|++-++++.|+|+..-.+.|+|.. +.+.+...+-.++|++.|+..+.+|+.|
T Consensus 222 k~vgVi~AsalsmgLLt~~gp~~wHPaS------------------------~Elk~~a~~aa~~Cq~rnv~l~kLA~~Y 277 (342)
T KOG1576|consen 222 KGVGVINASALSMGLLTNQGPPPWHPAS------------------------DELKEAAKAAAEYCQSRNVELGKLAMYY 277 (342)
T ss_pred cCceEEehhhHHHHHhhcCCCCCCCCCC------------------------HHHHHHHHHHHHHHHHcCccHHHHHHHH
Confidence 9999999999999999987777666655 2344555677888999999999999999
Q ss_pred HHhCCCCceeeeccCCCCHHHHHHhHhhhcCCCCHHH----HHHHHHHHhcCCCCCcccCCCccc
Q 022300 236 ILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDD----VNSIQEVTKKGKDLLGVIGDCGDE 296 (299)
Q Consensus 236 ~l~~~~v~~~i~g~~~~~~e~l~enl~a~~~~Lt~e~----~~~i~~~~~~~~~~~~~~~~~~~~ 296 (299)
.++.+++.++++|++ +.++|+.|+++....||.-+ ...++++++... ...|++..=+.
T Consensus 278 am~~~~~~~~lvGm~--s~~~l~~nLdan~~~ls~~~~Qevl~~~r~~~~~~k-n~~W~g~~~~~ 339 (342)
T KOG1576|consen 278 AMSLPGVSTVLVGMS--SRQLLRINLDANFDRLSSKHEQEVLRILREILKETK-NEEWEGGILHP 339 (342)
T ss_pred HHccCCcceEEecCc--hHHHHHHHHHhhhccccchhHHHHHHHHHHHhhhhc-cCCCCCCCCcc
Confidence 999999999999999 99999999998766777622 223344443333 45586544333
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.04 E-value=1.3e-05 Score=68.42 Aligned_cols=71 Identities=24% Similarity=0.371 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHc-CCCeeEeeecccccccChhhHHHHHHHHhCCeEEEcc
Q 022300 93 LDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 164 (299)
Q Consensus 93 ~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~ 164 (299)
...|+.||+++.+|+|..||+|.|+..++++++.. .+.|.++|+++.-.+.-| .++..+|.+++|.+..++
T Consensus 156 kplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 156 KPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhhhcceeeeecC
Confidence 47899999999999999999999999999999987 789999999999877655 479999999999998864
No 19
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=86.78 E-value=4.6 Score=34.09 Aligned_cols=112 Identities=16% Similarity=0.163 Sum_probs=77.1
Q ss_pred CCHHHHHHHHH-----------HHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHH
Q 022300 56 MTSSIVRESID-----------VSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRII 124 (299)
Q Consensus 56 ~~~~~i~~~ve-----------~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~ 124 (299)
.+.+.+.+++. +.|....-+.+|.+.+..--- .+...-+.|+++.+=|+-.-|++.||.-+..+.-
T Consensus 44 id~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ---~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~ 120 (193)
T PF07021_consen 44 IDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQ---AVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQ 120 (193)
T ss_pred cCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHH---hHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHH
Confidence 45566665554 455555666667666654210 1223445577777788888899999988877665
Q ss_pred HHc-CCCeeEeeecccccccCh-----hhHHHHHHHHhCCeEEEcccccccc
Q 022300 125 LEN-GIPVVSNQVQHSVVDMRP-----QQKMAELCQLTGVKLITYGTVMGGL 170 (299)
Q Consensus 125 ~~~-~~~~~~~q~~~n~~~~~~-----~~~~~~~~~~~gi~v~~~~pl~~G~ 170 (299)
+-. |--|..-.++|+-.+... -.++-++|++.|+.|.-..++.++.
T Consensus 121 l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 121 LLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred HHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 553 666777888888765332 3578899999999999999998764
No 20
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=86.26 E-value=8.5 Score=34.04 Aligned_cols=67 Identities=4% Similarity=-0.054 Sum_probs=48.4
Q ss_pred HHHHHHcCcccEEEe--cCCCHHHHHHHHHcCCCeeEeeecccccccChhhHHHHHHHHhCCeEEEcccc
Q 022300 99 LTDLKEEGKIKTVAL--TNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 166 (299)
Q Consensus 99 L~~l~~~Gkir~iGv--s~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~pl 166 (299)
|.+-.++|+. .+|+ ..-++...+.+...|.+|.++-+++.+++......++..|+..|+..+.+.|-
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~ 78 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPT 78 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 4455555775 3553 33345555555555899999999999998877677899999999988887654
No 21
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=83.75 E-value=13 Score=32.75 Aligned_cols=65 Identities=5% Similarity=-0.151 Sum_probs=45.9
Q ss_pred HHHHcCcccEEEe--cCCCHHHHHHHHHcCCCeeEeeecccccccChhhHHHHHHHHhCCeEEEcccc
Q 022300 101 DLKEEGKIKTVAL--TNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 166 (299)
Q Consensus 101 ~l~~~Gkir~iGv--s~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~pl 166 (299)
+-.++|+. .+|+ ..-++...+.+...|.+|.++-+++.+++...-..++..++..|+..+.+.|-
T Consensus 5 ~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~ 71 (249)
T TIGR03239 5 QDLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPW 71 (249)
T ss_pred HHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 33344664 3443 33345555555555899999999999998777677888889999888887554
No 22
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=82.75 E-value=9.9 Score=33.26 Aligned_cols=106 Identities=14% Similarity=0.086 Sum_probs=69.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcC-cccEEEecCCCHHHHHHHHHcCCCeeE
Q 022300 55 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIPVVS 133 (299)
Q Consensus 55 ~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~G-kir~iGvs~~~~~~l~~~~~~~~~~~~ 133 (299)
.++.+...+-++. |..+|+++|.+-..-.+... +..++.++.+..+++.+ .++...++.-..+.++.+.+.+ .+.
T Consensus 15 ~~s~e~~~~i~~~-L~~~GV~~IEvg~~~~~~~~-p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g--~~~ 90 (265)
T cd03174 15 TFSTEDKLEIAEA-LDEAGVDSIEVGSGASPKAV-PQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG--VDE 90 (265)
T ss_pred CCCHHHHHHHHHH-HHHcCCCEEEeccCcCcccc-ccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC--cCE
Confidence 4566776666655 78899999998876654322 32456778888888888 5666666655577777777765 344
Q ss_pred eeecccccc--------c------ChhhHHHHHHHHhCCeEEEcc
Q 022300 134 NQVQHSVVD--------M------RPQQKMAELCQLTGVKLITYG 164 (299)
Q Consensus 134 ~q~~~n~~~--------~------~~~~~~~~~~~~~gi~v~~~~ 164 (299)
+++.+..-+ + ..-...++.+++.|+.+....
T Consensus 91 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 91 VRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 444444321 1 112357888999998876654
No 23
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=80.90 E-value=22 Score=31.69 Aligned_cols=66 Identities=8% Similarity=0.050 Sum_probs=46.7
Q ss_pred HHHHHHcCcccEEEe-c-CCCHHHHHHHHHcCCCeeEeeecccccccChhhHHHHHHHHhCCeEEEccc
Q 022300 99 LTDLKEEGKIKTVAL-T-NFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 165 (299)
Q Consensus 99 L~~l~~~Gkir~iGv-s-~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~p 165 (299)
|.+-.++|+.. +|+ . .-++...+.+...|.++.++-.++++++......++..++..|+..+.+.|
T Consensus 9 lk~~L~~G~~~-~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp 76 (267)
T PRK10128 9 FKEGLRKGEVQ-IGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPV 76 (267)
T ss_pred HHHHHHcCCce-EEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECC
Confidence 44555567754 443 3 334555555555589999999999999887766788889989988877655
No 24
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=77.60 E-value=1.3 Score=40.97 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=39.5
Q ss_pred cCcccEEEecCCCHHHHHHHHHcCCCeeEeeecccccccChhhHHHHHHHHhCCeE
Q 022300 105 EGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKL 160 (299)
Q Consensus 105 ~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v 160 (299)
-|+||++||--++.+++.++....-.-++.+-+..+|-...+..+++.|++.||.-
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip~ 318 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIPD 318 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCcH
Confidence 49999999999999999998876223334444444443444456888888888753
No 25
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=76.26 E-value=34 Score=30.03 Aligned_cols=66 Identities=14% Similarity=0.061 Sum_probs=44.9
Q ss_pred HHHHHHcCcccEEE--ecCCCHHHHHHHHHcCCCeeEeeecccccccChhhHHHHHHHHhCCeEEEccc
Q 022300 99 LTDLKEEGKIKTVA--LTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 165 (299)
Q Consensus 99 L~~l~~~Gkir~iG--vs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~p 165 (299)
|.+..++|+. .+| +..-++..++.+...+.++.++-+++++++......++..++..|+.++.+.|
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~ 70 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPA 70 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECC
Confidence 3444556775 344 33445666666766688999999999998665545577777777887777643
No 26
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=76.23 E-value=22 Score=33.24 Aligned_cols=88 Identities=15% Similarity=0.075 Sum_probs=63.2
Q ss_pred EEEecCCCC----------CCcHHHHHHHHHHHHHcCcccEEEec-------CCCHHHHHHHHHc--CC------CeeEe
Q 022300 80 LQFHWWDYS----------NPGYLDALNHLTDLKEEGKIKTVALT-------NFDTERLRIILEN--GI------PVVSN 134 (299)
Q Consensus 80 ~~lH~pd~~----------~~~~~~~~~~L~~l~~~Gkir~iGvs-------~~~~~~l~~~~~~--~~------~~~~~ 134 (299)
+-||.|+.. ...++++++++.+..+... |.|-+- |.+.+.++++.+. +. +..++
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~-rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VN 310 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTR-RRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVN 310 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhC-CEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEE
Confidence 568887522 1137899999988865532 344443 8888988888876 66 78999
Q ss_pred eecccccccCh--------hhHHHHHHHHhCCeEEEcccccc
Q 022300 135 QVQHSVVDMRP--------QQKMAELCQLTGVKLITYGTVMG 168 (299)
Q Consensus 135 q~~~n~~~~~~--------~~~~~~~~~~~gi~v~~~~pl~~ 168 (299)
-++||+..... -..+.+..+++|+.+..+...+.
T Consensus 311 LIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 311 LIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred EecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 99999964321 13567778899999999888766
No 27
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=75.79 E-value=57 Score=28.90 Aligned_cols=100 Identities=9% Similarity=0.061 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHc--CCCeeE
Q 022300 56 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN--GIPVVS 133 (299)
Q Consensus 56 ~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~--~~~~~~ 133 (299)
.+.+.+.+..++. ..-|.|.||+-.-- ..... .+.+...++.+++.-.+ -|.+-+++++.++++++. |.+ -+
T Consensus 22 ~d~~~i~~~A~~~-~~~GAdiIDVg~~~--~~~eE-~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~-iI 95 (261)
T PRK07535 22 KDAAFIQKLALKQ-AEAGADYLDVNAGT--AVEEE-PETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPP-LI 95 (261)
T ss_pred CCHHHHHHHHHHH-HHCCCCEEEECCCC--CchhH-HHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCC-EE
Confidence 3556666666554 36799999997531 11222 45566677777655333 378889999999999987 433 33
Q ss_pred eeecccccccChhhHHHHHHHHhCCeEEEcc
Q 022300 134 NQVQHSVVDMRPQQKMAELCQLTGVKLITYG 164 (299)
Q Consensus 134 ~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~ 164 (299)
|-+... . ....++++.+++.|+.++.+.
T Consensus 96 NsIs~~--~-~~~~~~~~l~~~~g~~vv~m~ 123 (261)
T PRK07535 96 NSVSAE--G-EKLEVVLPLVKKYNAPVVALT 123 (261)
T ss_pred EeCCCC--C-ccCHHHHHHHHHhCCCEEEEe
Confidence 332221 1 112468999999999999864
No 28
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=71.99 E-value=1e+02 Score=29.97 Aligned_cols=108 Identities=16% Similarity=0.127 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHH----cCcccEEEec--CCCHHHHHHHHHcCC
Q 022300 56 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE----EGKIKTVALT--NFDTERLRIILENGI 129 (299)
Q Consensus 56 ~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~----~Gkir~iGvs--~~~~~~l~~~~~~~~ 129 (299)
++.+.|.+.++. ++..|...+-|+.=..| ....++-+.+.+..+++ .|.++.++++ ..+.++++++.+.|+
T Consensus 115 Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p--~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~LkeaGv 191 (469)
T PRK09613 115 LTQEEIREEVKA-LEDMGHKRLALVAGEDP--PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEAGI 191 (469)
T ss_pred CCHHHHHHHHHH-HHHCCCCEEEEEeCCCC--CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHcCC
Confidence 578999999985 57899877766421222 22236767777777775 4777766664 678899999999876
Q ss_pred C-eeEeeeccccc-----cc-----Ch--hhHHHHHHHHhCCeEEEcccc
Q 022300 130 P-VVSNQVQHSVV-----DM-----RP--QQKMAELCQLTGVKLITYGTV 166 (299)
Q Consensus 130 ~-~~~~q~~~n~~-----~~-----~~--~~~~~~~~~~~gi~v~~~~pl 166 (299)
. +.+.|=-||.- +. .. -.+.++.|++.|+.-++.+.|
T Consensus 192 ~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L 241 (469)
T PRK09613 192 GTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVL 241 (469)
T ss_pred CEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEE
Confidence 4 55666665521 11 11 235788899999875554444
No 29
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=71.94 E-value=92 Score=29.56 Aligned_cols=96 Identities=16% Similarity=0.156 Sum_probs=66.7
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHcCCCeeE
Q 022300 54 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS 133 (299)
Q Consensus 54 ~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~ 133 (299)
.+++++.+.+.+|+..+ |-+|.+-+|.- -..+.++.++++|+ -.|+.+....-+...+..
T Consensus 138 ~~mt~d~~~~~ie~qa~----~GVDfmTiHcG--------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~------ 197 (431)
T PRK13352 138 VDMTEDDLFDVIEKQAK----DGVDFMTIHCG--------VTRETLERLKKSGR--IMGIVSRGGSFLAAWMLH------ 197 (431)
T ss_pred hhCCHHHHHHHHHHHHH----hCCCEEEEccc--------hhHHHHHHHHhcCC--ccCeecCCHHHHHHHHHH------
Confidence 46789999999998877 46899999973 23567888898884 567777777776666554
Q ss_pred eeecccccccChhhHHHHHHHHhCCeEEEccccccccc
Q 022300 134 NQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLL 171 (299)
Q Consensus 134 ~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G~L 171 (299)
...=|+|...+ ..+++.|+++++.+.---.|-.|-+
T Consensus 198 -n~~ENPlye~f-D~lLeI~~~yDVtlSLGDglRPG~i 233 (431)
T PRK13352 198 -NNKENPLYEHF-DYLLEILKEYDVTLSLGDGLRPGCI 233 (431)
T ss_pred -cCCcCchHHHH-HHHHHHHHHhCeeeeccCCcCCCcc
Confidence 11224443333 4799999999998865444444433
No 30
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=71.92 E-value=41 Score=30.27 Aligned_cols=108 Identities=16% Similarity=0.152 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHcCCCeeEe
Q 022300 55 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN 134 (299)
Q Consensus 55 ~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~ 134 (299)
.++.+...+ +-+.|.++|+++|.+-.+++|... +...+.++.+..+.+...++...+. .+...++.+.+.+.+...+
T Consensus 22 ~~s~e~k~~-ia~~L~~~Gv~~IEvgsf~~p~~~-p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g~~~v~i 98 (287)
T PRK05692 22 FIPTADKIA-LIDRLSAAGLSYIEVASFVSPKWV-PQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAGADEVAV 98 (287)
T ss_pred CcCHHHHHH-HHHHHHHcCCCEEEeCCCcCcccc-cccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcCCCEEEE
Confidence 355665544 445599999999999855555311 1122334555555544445555554 4788888888876553333
Q ss_pred eeccccc------ccCh------hhHHHHHHHHhCCeEEEccc
Q 022300 135 QVQHSVV------DMRP------QQKMAELCQLTGVKLITYGT 165 (299)
Q Consensus 135 q~~~n~~------~~~~------~~~~~~~~~~~gi~v~~~~p 165 (299)
-+..|.. .... -.+.+++++++|+.+.+.-.
T Consensus 99 ~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~ 141 (287)
T PRK05692 99 FASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVS 141 (287)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 3333311 1111 23589999999988865333
No 31
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=71.48 E-value=55 Score=30.90 Aligned_cols=96 Identities=14% Similarity=0.123 Sum_probs=65.5
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHcCCCeeE
Q 022300 54 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS 133 (299)
Q Consensus 54 ~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~ 133 (299)
.+++++.+.+.+|+..+ |-+|.+-+|.- -..+.++.++++|+ ..|+.+....-+...+..
T Consensus 135 ~~mt~d~~~~~ie~qa~----dGVDfmTiH~G--------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~------ 194 (423)
T TIGR00190 135 EDMDEDDMFRAIEKQAK----DGVDFMTIHAG--------VLLEYVERLKRSGR--ITGIVSRGGAILAAWMLH------ 194 (423)
T ss_pred hhCCHHHHHHHHHHHHH----hCCCEEEEccc--------hhHHHHHHHHhCCC--ccCeecCcHHHHHHHHHH------
Confidence 46789999999998877 46899999973 34567888999884 567777777766666554
Q ss_pred eeecccccccChhhHHHHHHHHhCCeEEEccccccccc
Q 022300 134 NQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLL 171 (299)
Q Consensus 134 ~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G~L 171 (299)
.-.=|++...+ ..+++.|+++++.+.---.|-.|-+
T Consensus 195 -~~~ENPlye~f-D~lLeI~~~yDVtlSLGDglRPG~i 230 (423)
T TIGR00190 195 -HHKENPLYKNF-DYILEIAKEYDVTLSLGDGLRPGCI 230 (423)
T ss_pred -cCCcCchHHHH-HHHHHHHHHhCeeeeccCCcCCCcc
Confidence 11223433333 4689999999988755444444433
No 32
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=71.29 E-value=49 Score=29.16 Aligned_cols=103 Identities=16% Similarity=0.105 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEE-EecCCCCC----CcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHcCCC
Q 022300 56 MTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSN----PGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 130 (299)
Q Consensus 56 ~~~~~i~~~ve~SL~~Lg~d~iDl~~-lH~pd~~~----~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~ 130 (299)
.+.+.+.+..++.+ .-|.|.||+-. --+|+... ...+.+...++.+++.-.+. |.+.+++++.++++++.+.+
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~p-iSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVP-ISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCe-EEEeCCcHHHHHHHHHhCCC
Confidence 46777777776654 67999999974 33454311 11345677777777663433 88899999999999998632
Q ss_pred eeEeeecccccccChhhHHHHHHHHhCCeEEEccc
Q 022300 131 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 165 (299)
Q Consensus 131 ~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~p 165 (299)
.++-+ +..... .++++.+++.|+.++.+..
T Consensus 99 -iINdi--s~~~~~--~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 99 -IINDV--SGGRGD--PEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred -EEEeC--CCCCCC--hHHHHHHHHcCCCEEEECc
Confidence 22222 222111 4689999999999988743
No 33
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=68.19 E-value=54 Score=29.94 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=23.6
Q ss_pred eeccCCCCHHHHHHhHhhhcC-CCCHHHHHHHH
Q 022300 246 MIGVRLGLAEHIQDTNAIFML-SLDEDDVNSIQ 277 (299)
Q Consensus 246 i~g~~~~~~e~l~enl~a~~~-~Lt~e~~~~i~ 277 (299)
..|.. ++..+...++++.. -+++++++.|-
T Consensus 269 p~gle--d~~~l~~l~~~L~~~G~~e~~i~~i~ 299 (313)
T COG2355 269 PDGLE--DVGKLPNLTAALIERGYSEEEIEKIA 299 (313)
T ss_pred chhhc--ChhHHHHHHHHHHHcCCCHHHHHHHH
Confidence 34677 88889888888866 49999988764
No 34
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=67.88 E-value=87 Score=27.65 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEE-EecCCCCCCcH----HHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHcCCC
Q 022300 56 MTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSNPGY----LDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 130 (299)
Q Consensus 56 ~~~~~i~~~ve~SL~~Lg~d~iDl~~-lH~pd~~~~~~----~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~ 130 (299)
.+++.+.+.+++.+ .-|.++||+-. --+|+...... +.+...++.+++.-.+ -+.+-+++++.++++++.|.+
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~-plsiDT~~~~vi~~al~~G~~ 97 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV-PISVDTYRAEVARAALEAGAD 97 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCCHHHHHHHHHcCCC
Confidence 46777777776654 66999999942 22343321112 2366666777666223 388889999999999998644
Q ss_pred eeEeeecccccccChhhHHHHHHHHhCCeEEEcc
Q 022300 131 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 164 (299)
Q Consensus 131 ~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~ 164 (299)
. ++-+ +... ..++++.+++.|..++.+.
T Consensus 98 i-INsi--s~~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 98 I-INDV--SGGQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred E-EEEC--CCCC---CchhHHHHHHcCCcEEEEe
Confidence 3 2222 2211 3468899999999999953
No 35
>PRK13753 dihydropteroate synthase; Provisional
Probab=67.26 E-value=91 Score=28.02 Aligned_cols=102 Identities=12% Similarity=0.089 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEe-cCCCCC-C---cHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHcCCC
Q 022300 56 MTSSIVRESIDVSRRRMDVPCLDMLQFH-WWDYSN-P---GYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 130 (299)
Q Consensus 56 ~~~~~i~~~ve~SL~~Lg~d~iDl~~lH-~pd~~~-~---~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~ 130 (299)
++.+.+.+..++.+ .-|.|-||+---- +|.... + .+..+...++.+++.+. .|.|-++.++.++++++.|..
T Consensus 22 ~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~aGad 98 (279)
T PRK13753 22 LDPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKRGVG 98 (279)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHcCCC
Confidence 46677777777644 5688888887643 454332 1 13455678888888753 489999999999999998765
Q ss_pred eeEeeecccccccChhhHHHHHHHHhCCeEEEcccc
Q 022300 131 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 166 (299)
Q Consensus 131 ~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~pl 166 (299)
+...... +. ...+.+.+.+.|+.++.+--.
T Consensus 99 iINDVsg---~~---d~~~~~vva~~~~~vVlmH~~ 128 (279)
T PRK13753 99 YLNDIQG---FP---DPALYPDIAEADCRLVVMHSA 128 (279)
T ss_pred EEEeCCC---CC---chHHHHHHHHcCCCEEEEecC
Confidence 4322222 21 346788888999999886543
No 36
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=63.26 E-value=1.1e+02 Score=27.08 Aligned_cols=102 Identities=17% Similarity=0.115 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEE-EecCCCCCCc----HHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHcCCC
Q 022300 56 MTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSNPG----YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 130 (299)
Q Consensus 56 ~~~~~i~~~ve~SL~~Lg~d~iDl~~-lH~pd~~~~~----~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~ 130 (299)
++.+.+.+..++.+ +-|.|.||+-. -.+|...... ++.+...++.+++.-.+. +.+-+++++.++++++.|.+
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCCC
Confidence 46677777666654 56899999964 3345433211 234555667777664443 88889999999999998633
Q ss_pred eeEeeecccccccChhhHHHHHHHHhCCeEEEcc
Q 022300 131 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 164 (299)
Q Consensus 131 ~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~ 164 (299)
+ +|-+ +.+... .++++.++++|+.++.+.
T Consensus 99 i-INdi--sg~~~~--~~~~~l~~~~~~~vV~m~ 127 (257)
T cd00739 99 I-INDV--SGGSDD--PAMLEVAAEYGAPLVLMH 127 (257)
T ss_pred E-EEeC--CCCCCC--hHHHHHHHHcCCCEEEEC
Confidence 2 2222 222211 468999999999999953
No 37
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=63.13 E-value=61 Score=29.36 Aligned_cols=145 Identities=19% Similarity=0.265 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhhcCCCcccEEEEecCCCCC---CcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHH--HHcCCCee
Q 022300 58 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN---PGYLDALNHLTDLKEEGKIKTVALTNFDTERLRII--LENGIPVV 132 (299)
Q Consensus 58 ~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~---~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~--~~~~~~~~ 132 (299)
.+.+++.+.+-+++.|+|++=++..-.-.... +...+.+++|++..+++.-. + ++..+... +..+.+|.
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~-~-----~aS~~YA~AAl~~g~~fv 204 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE-I-----SASMLYAYAALEAGVPFV 204 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT-H-----HHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc-C-----ChHHHHHHHHHHCCCCeE
Confidence 47788899999999998865555444322211 11335788888888876543 2 23333332 33343333
Q ss_pred EeeecccccccChhhHHHHHHHHhCCeEEEc---ccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhhcCCchH
Q 022300 133 SNQVQHSVVDMRPQQKMAELCQLTGVKLITY---GTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQ 209 (299)
Q Consensus 133 ~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~---~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (299)
|=.+=+. -.. ..+.+.++++|+.+..- ++++.|++
T Consensus 205 -N~tP~~~-a~~--P~l~ela~~~gvpi~GdD~KT~lAAplv-------------------------------------- 242 (295)
T PF07994_consen 205 -NGTPSNI-ADD--PALVELAEEKGVPIAGDDGKTPLAAPLV-------------------------------------- 242 (295)
T ss_dssp -E-SSSTT-TTS--HHHHHHHHHHTEEEEESSBS-HHHHHHH--------------------------------------
T ss_pred -eccCccc-cCC--HHHHHHHHHcCCCeecchHhhhhhhHHH--------------------------------------
Confidence 2222222 122 36899999999887762 23333322
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceeeeccCCCCHHHH
Q 022300 210 FQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHI 257 (299)
Q Consensus 210 ~~~~~~~l~~la~~~~~s~aq~al~~~l~~~~v~~~i~g~~~~~~e~l 257 (299)
-+ +-.+.++|.+.|..-.+-.++|....|.+. .|.. ....+
T Consensus 243 -lD-Lirl~~la~r~g~~Gv~~~ls~ffK~P~~~---~g~~--~~~~l 283 (295)
T PF07994_consen 243 -LD-LIRLAKLALRRGMGGVQEWLSFFFKSPMVP---PGPP--QEHDL 283 (295)
T ss_dssp -HH-HHHHHHHHHHTTS-EEHHHHHHHBSS-T-----TTST--T--HH
T ss_pred -HH-HHHHHHHHHHcCCCChhHHHHHHhcCCCcc---CCCC--CCCcH
Confidence 11 356889999999988999999999999643 3555 44444
No 38
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=62.40 E-value=19 Score=30.78 Aligned_cols=93 Identities=12% Similarity=0.115 Sum_probs=59.5
Q ss_pred HhhcCCCcccEEEEe-cCCCCCC----cHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHcCCCeeEeeeccccccc
Q 022300 69 RRRMDVPCLDMLQFH-WWDYSNP----GYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM 143 (299)
Q Consensus 69 L~~Lg~d~iDl~~lH-~pd~~~~----~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~ 143 (299)
+..-|.|+||+=--- +|....- .++.+...++.+++..-=--+.+-++.++.++++++.+.++..+...+..
T Consensus 28 ~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~g~~~ind~~~~~~--- 104 (210)
T PF00809_consen 28 QVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKAGADIINDISGFED--- 104 (210)
T ss_dssp HHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHTSSEEEETTTTSS---
T ss_pred HHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHcCcceEEecccccc---
Confidence 344699999986432 2322111 13456666666665111124777899999999999987766555444432
Q ss_pred ChhhHHHHHHHHhCCeEEEcccc
Q 022300 144 RPQQKMAELCQLTGVKLITYGTV 166 (299)
Q Consensus 144 ~~~~~~~~~~~~~gi~v~~~~pl 166 (299)
..++++.++++|..++.+---
T Consensus 105 --~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 --DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp --STTHHHHHHHHTSEEEEESES
T ss_pred --cchhhhhhhcCCCEEEEEecc
Confidence 357899999999999997444
No 39
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=62.38 E-value=83 Score=29.28 Aligned_cols=89 Identities=16% Similarity=0.132 Sum_probs=57.2
Q ss_pred EEEecCCCC----------CCcHHHHHHHHHHHHH-cCc---ccEEEec--CCCHHHHHHHHHc--CCCeeEeeeccccc
Q 022300 80 LQFHWWDYS----------NPGYLDALNHLTDLKE-EGK---IKTVALT--NFDTERLRIILEN--GIPVVSNQVQHSVV 141 (299)
Q Consensus 80 ~~lH~pd~~----------~~~~~~~~~~L~~l~~-~Gk---ir~iGvs--~~~~~~l~~~~~~--~~~~~~~q~~~n~~ 141 (299)
+-||.++.. ...++++++++.+..+ .|+ |+++=+. |.+.+.+.++.+. +.++.++-++||..
T Consensus 219 iSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~ 298 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPF 298 (355)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccC
Confidence 668987521 1126888888887654 442 2222222 5566777777665 56678888999986
Q ss_pred cc----Chh----hHHHHHHHHhCCeEEEcccccc
Q 022300 142 DM----RPQ----QKMAELCQLTGVKLITYGTVMG 168 (299)
Q Consensus 142 ~~----~~~----~~~~~~~~~~gi~v~~~~pl~~ 168 (299)
.. .+. ..+.+..+++|+.++.....+.
T Consensus 299 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~ 333 (355)
T TIGR00048 299 PEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGD 333 (355)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 42 111 2356667778999999877766
No 40
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=60.81 E-value=1.4e+02 Score=27.64 Aligned_cols=94 Identities=16% Similarity=0.116 Sum_probs=61.0
Q ss_pred CcccEEEEecCCCC----------CCcHHHHHHHHHH-HHHcCc---ccEEEec--CCCHHHHHHHHHc--CCCeeEeee
Q 022300 75 PCLDMLQFHWWDYS----------NPGYLDALNHLTD-LKEEGK---IKTVALT--NFDTERLRIILEN--GIPVVSNQV 136 (299)
Q Consensus 75 d~iDl~~lH~pd~~----------~~~~~~~~~~L~~-l~~~Gk---ir~iGvs--~~~~~~l~~~~~~--~~~~~~~q~ 136 (299)
+....+-||.++.. ...++++++++.+ +.+.|+ ++++=+. |.+.+.+.++.+. +.+..++-+
T Consensus 211 ~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~~VnLI 290 (345)
T PRK14457 211 QFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRGFQSHVNLI 290 (345)
T ss_pred ceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCCeEEEe
Confidence 34567888987522 1126777877766 455563 3444343 6677887777765 566788899
Q ss_pred ccccccc----Chh----hHHHHHHHHhCCeEEEcccccc
Q 022300 137 QHSVVDM----RPQ----QKMAELCQLTGVKLITYGTVMG 168 (299)
Q Consensus 137 ~~n~~~~----~~~----~~~~~~~~~~gi~v~~~~pl~~ 168 (299)
+||++.. .+. ..+.+..+++|+.+......+.
T Consensus 291 Pynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 291 PYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGL 330 (345)
T ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 9998642 111 2356667778999988777665
No 41
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=60.05 E-value=1.2e+02 Score=28.13 Aligned_cols=103 Identities=11% Similarity=0.057 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCC--CCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHcCCCeeE
Q 022300 56 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWD--YSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS 133 (299)
Q Consensus 56 ~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd--~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~ 133 (299)
++.+.- -.+-+.|.++|+++|++-..-+|. +..-+.+++++++.. ...++..++. .+...++.+++.+.....
T Consensus 65 ~s~e~K-i~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~---~~~~~~~~l~-~n~~die~A~~~g~~~v~ 139 (347)
T PLN02746 65 VPTSVK-VELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRN---LEGARFPVLT-PNLKGFEAAIAAGAKEVA 139 (347)
T ss_pred CCHHHH-HHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHh---ccCCceeEEc-CCHHHHHHHHHcCcCEEE
Confidence 455543 445556999999999997554542 111123455555543 2335555554 588899999988554333
Q ss_pred eeeccccc------ccCh------hhHHHHHHHHhCCeEEEc
Q 022300 134 NQVQHSVV------DMRP------QQKMAELCQLTGVKLITY 163 (299)
Q Consensus 134 ~q~~~n~~------~~~~------~~~~~~~~~~~gi~v~~~ 163 (299)
+-+.-|.. +... -.+++++|+++|+.+.++
T Consensus 140 i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~ 181 (347)
T PLN02746 140 VFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY 181 (347)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 32222211 1111 136889999999888543
No 42
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=59.63 E-value=39 Score=29.46 Aligned_cols=57 Identities=12% Similarity=0.075 Sum_probs=50.1
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCccc
Q 022300 53 PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK 109 (299)
Q Consensus 53 ~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir 109 (299)
..+.+.+....-..-+.+-++++.|-|=.+-..+.-.++..+++++-|.|+++|-+-
T Consensus 77 aGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~V 133 (262)
T COG2022 77 AGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVV 133 (262)
T ss_pred cccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEE
Confidence 346788999999999999999999999999888888888889999999999998643
No 43
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=59.35 E-value=70 Score=27.38 Aligned_cols=81 Identities=11% Similarity=0.071 Sum_probs=51.0
Q ss_pred hhcCCCcccEEEEe-cCCCCCCcHHHHHHHHHHHHHcCc-ccEEEec-CCCHHHHHHHHHcCCCeeEeeecccccccChh
Q 022300 70 RRMDVPCLDMLQFH-WWDYSNPGYLDALNHLTDLKEEGK-IKTVALT-NFDTERLRIILENGIPVVSNQVQHSVVDMRPQ 146 (299)
Q Consensus 70 ~~Lg~d~iDl~~lH-~pd~~~~~~~~~~~~L~~l~~~Gk-ir~iGvs-~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~ 146 (299)
..+|.||+=+.+.- +|- ... . + ...++.+... ++.+||. |.+.+.+.++++. ..++++|++-.. .
T Consensus 19 ~~~gad~iG~If~~~SpR-~Vs-~-~---~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~-~~ld~VQlHG~e-----~ 86 (208)
T COG0135 19 AKAGADYIGFIFVPKSPR-YVS-P-E---QAREIASAVPKVKVVGVFVNESIEEILEIAEE-LGLDAVQLHGDE-----D 86 (208)
T ss_pred HHcCCCEEEEEEcCCCCC-cCC-H-H---HHHHHHHhCCCCCEEEEECCCCHHHHHHHHHh-cCCCEEEECCCC-----C
Confidence 45788888776655 321 111 2 2 3333333333 8899988 7788888888885 679999998763 2
Q ss_pred hHHHHHHHHhC-CeEEE
Q 022300 147 QKMAELCQLTG-VKLIT 162 (299)
Q Consensus 147 ~~~~~~~~~~g-i~v~~ 162 (299)
.+.++..++.. +.|+-
T Consensus 87 ~~~~~~l~~~~~~~v~k 103 (208)
T COG0135 87 PEYIDQLKEELGVPVIK 103 (208)
T ss_pred HHHHHHHHhhcCCceEE
Confidence 34566666654 55554
No 44
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=58.18 E-value=45 Score=28.38 Aligned_cols=88 Identities=10% Similarity=0.108 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCC-CHHHHHHHHHcCCCeeEee
Q 022300 57 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF-DTERLRIILENGIPVVSNQ 135 (299)
Q Consensus 57 ~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~~~~~q 135 (299)
+++...+-++ .|.+-|+..+-+=+ . ..+.++.+++++++..=-.||..+- +.++++.+++.|-.|.+.
T Consensus 14 ~~~~a~~ia~-al~~gGi~~iEit~------~---tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivS- 82 (201)
T PRK06015 14 DVEHAVPLAR-ALAAGGLPAIEITL------R---TPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVS- 82 (201)
T ss_pred CHHHHHHHHH-HHHHCCCCEEEEeC------C---CccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEEC-
Confidence 4555555444 45555655554433 2 2356667777776644356888754 789999999987666532
Q ss_pred ecccccccChhhHHHHHHHHhCCeEEE
Q 022300 136 VQHSVVDMRPQQKMAELCQLTGVKLIT 162 (299)
Q Consensus 136 ~~~n~~~~~~~~~~~~~~~~~gi~v~~ 162 (299)
+....+++++|+++|+.++.
T Consensus 83 -------P~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 83 -------PGTTQELLAAANDSDVPLLP 102 (201)
T ss_pred -------CCCCHHHHHHHHHcCCCEeC
Confidence 23346899999999988776
No 45
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=57.53 E-value=48 Score=28.28 Aligned_cols=88 Identities=16% Similarity=0.130 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCC-CHHHHHHHHHcCCCeeEee
Q 022300 57 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF-DTERLRIILENGIPVVSNQ 135 (299)
Q Consensus 57 ~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~~~~~q 135 (299)
+++...+-+ +.|-+-|+..+-+=+ . .+..++.+++++++..=-.||..+- +.++++.+++.|-.|.+
T Consensus 18 ~~e~a~~~~-~al~~~Gi~~iEit~------~---t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fiv-- 85 (204)
T TIGR01182 18 DVDDALPLA-KALIEGGLRVLEVTL------R---TPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIV-- 85 (204)
T ss_pred CHHHHHHHH-HHHHHcCCCEEEEeC------C---CccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEE--
Confidence 455554444 456666765554433 2 2356667777777644466888854 78999999998766662
Q ss_pred ecccccccChhhHHHHHHHHhCCeEEE
Q 022300 136 VQHSVVDMRPQQKMAELCQLTGVKLIT 162 (299)
Q Consensus 136 ~~~n~~~~~~~~~~~~~~~~~gi~v~~ 162 (299)
+ +....+++++|+++|+.++.
T Consensus 86 ---s---P~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 86 ---S---PGLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred ---C---CCCCHHHHHHHHHcCCcEEC
Confidence 2 22345899999999997776
No 46
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=56.12 E-value=98 Score=27.40 Aligned_cols=101 Identities=13% Similarity=0.079 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCc-ccEEEecCCCHHHHHHHHHcCCCeeE
Q 022300 55 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 133 (299)
Q Consensus 55 ~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gk-ir~iGvs~~~~~~l~~~~~~~~~~~~ 133 (299)
.++.+...+-++. |.++|++.|.+-. |... ++..++.+.+.+.++ .+-+++...+.+.++.+.+.+++...
T Consensus 18 ~~s~~~k~~i~~~-L~~~Gv~~IEvG~---P~~~----~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~ 89 (262)
T cd07948 18 FFDTEDKIEIAKA-LDAFGVDYIELTS---PAAS----PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGVDGVD 89 (262)
T ss_pred CCCHHHHHHHHHH-HHHcCCCEEEEEC---CCCC----HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCcCEEE
Confidence 4566666555554 9999998888874 4322 333444455544443 34455667788889999888655333
Q ss_pred eeecccc------cccCh------hhHHHHHHHHhCCeEEEc
Q 022300 134 NQVQHSV------VDMRP------QQKMAELCQLTGVKLITY 163 (299)
Q Consensus 134 ~q~~~n~------~~~~~------~~~~~~~~~~~gi~v~~~ 163 (299)
+-+..|. +.+.. -.+++++++++|+.|...
T Consensus 90 i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~ 131 (262)
T cd07948 90 LVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS 131 (262)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 3332221 11111 134678889999876664
No 47
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=54.98 E-value=50 Score=28.53 Aligned_cols=98 Identities=19% Similarity=0.257 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHcCcccEEEec----CCCHHHHHHHHHc-CCCeeEeeecccccccChhhHHHHHHHHhCCeEEEcccc
Q 022300 92 YLDALNHLTDLKEEGKIKTVALT----NFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 166 (299)
Q Consensus 92 ~~~~~~~L~~l~~~Gkir~iGvs----~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~pl 166 (299)
.++..++|..|+ +.+|... .+...+++.+.+. |.. .|.++-...+.+++...-+.|..++..+.-
T Consensus 75 ve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~------~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vs 144 (223)
T COG2102 75 VEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLK------VYAPLWGRDPEELLEEMVEAGFEAIIVAVS 144 (223)
T ss_pred HHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCE------EeecccCCCHHHHHHHHHHcCCeEEEEEEe
Confidence 667788888887 4455433 3344455555554 432 233443333457888888999998888888
Q ss_pred cccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhhcCCchHHHHHHHHHHHHHHHhCCCHH
Q 022300 167 MGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIP 229 (299)
Q Consensus 167 ~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~a 229 (299)
+.|+- ..+... +.-.+..+.+..++++||+.|+
T Consensus 145 a~gL~-~~~lGr-----------------------------~i~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 145 AEGLD-ESWLGR-----------------------------RIDREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred ccCCC-hHHhCC-----------------------------ccCHHHHHHHHHHHHhcCCCcc
Confidence 88743 111110 0111335889999999998763
No 48
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=54.67 E-value=2.1e+02 Score=27.80 Aligned_cols=103 Identities=9% Similarity=0.024 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcC-cccEEEecC----C--CHHHHHHHHHc
Q 022300 55 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTN----F--DTERLRIILEN 127 (299)
Q Consensus 55 ~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~G-kir~iGvs~----~--~~~~l~~~~~~ 127 (299)
..+++.+.+.++...++.|+..+ .+...+.... ...+.+.++.+++.| .-..+++++ . +.+.+..+.+.
T Consensus 221 ~rs~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f~~~-~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~a 296 (497)
T TIGR02026 221 HRDPKKFVDEIEWLVRTHGVGFF---ILADEEPTIN-RKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRA 296 (497)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEE---EEEecccccC-HHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHh
Confidence 35889999999998888886543 3333222223 455667777888887 333444432 1 34555555555
Q ss_pred CCCeeEeeecccccc--------c----ChhhHHHHHHHHhCCeEEEc
Q 022300 128 GIPVVSNQVQHSVVD--------M----RPQQKMAELCQLTGVKLITY 163 (299)
Q Consensus 128 ~~~~~~~q~~~n~~~--------~----~~~~~~~~~~~~~gi~v~~~ 163 (299)
|. ..+++..--++ . ....+.++.++++||.+.+.
T Consensus 297 G~--~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~ 342 (497)
T TIGR02026 297 GL--VHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQ 342 (497)
T ss_pred CC--cEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEE
Confidence 43 22222221111 1 11235788999999987553
No 49
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=54.62 E-value=35 Score=32.98 Aligned_cols=87 Identities=17% Similarity=0.197 Sum_probs=63.4
Q ss_pred HHhhhcCCCcEEEEecccCCCC----------------CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHH
Q 022300 33 EFVERGHQSSWISLTKWVPPPV----------------KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDAL 96 (299)
Q Consensus 33 ~~lg~~~R~~i~I~tK~~~~~~----------------~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~ 96 (299)
+.+|..++..+|+++-+|.=.. ..++..| -+|+.+.|+|.+- .++++++
T Consensus 150 k~f~~~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~ri-------~kR~~~gyld~~~--------~~ldeal 214 (545)
T TIGR01228 150 QHFGGSLKGKWVLTAGLGGMGGAQPLAVTMNGGVSIAVEVDESRI-------DKRLETKYCDEQT--------DSLDEAL 214 (545)
T ss_pred HhcCCCCceeEEEEeCCCccccccHHHHHHcCceEEEEEECHHHH-------HHHHhcCcceeEc--------CCHHHHH
Confidence 3344446889999998874100 1233433 3566678888652 3389999
Q ss_pred HHHHHHHHcCcccEEEecCCCHHHHHHHHHcCCCeeEe
Q 022300 97 NHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN 134 (299)
Q Consensus 97 ~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~ 134 (299)
+-.++.+++|+..+||+-.--.+.+.++.+.++.|+++
T Consensus 215 ~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlv 252 (545)
T TIGR01228 215 ARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVV 252 (545)
T ss_pred HHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCc
Confidence 99999999999999999987888889998887666655
No 50
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=54.50 E-value=1.8e+02 Score=26.76 Aligned_cols=94 Identities=11% Similarity=0.105 Sum_probs=55.0
Q ss_pred HhhcCCCcccEEEEec-CCCCCCcHHHHHHHHHHHHHcCcccE-EEecC---CCHHHHHHHHHc--CCCeeEeeeccccc
Q 022300 69 RRRMDVPCLDMLQFHW-WDYSNPGYLDALNHLTDLKEEGKIKT-VALTN---FDTERLRIILEN--GIPVVSNQVQHSVV 141 (299)
Q Consensus 69 L~~Lg~d~iDl~~lH~-pd~~~~~~~~~~~~L~~l~~~Gkir~-iGvs~---~~~~~l~~~~~~--~~~~~~~q~~~n~~ 141 (299)
-+.+|.|+||+-+.-. |+......++..+.++.+.+.=.+-- |..|. -+++.++++++. +-++-++-....
T Consensus 85 ~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat~e-- 162 (319)
T PRK04452 85 VEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEED-- 162 (319)
T ss_pred HHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECCHH--
Confidence 3578888888775432 33222213444444444433322222 55552 278889888886 333544333321
Q ss_pred ccChhhHHHHHHHHhCCeEEEccccc
Q 022300 142 DMRPQQKMAELCQLTGVKLITYGTVM 167 (299)
Q Consensus 142 ~~~~~~~~~~~~~~~gi~v~~~~pl~ 167 (299)
.-..+.+.|+++|..|++.+|..
T Consensus 163 ---n~~~i~~lA~~y~~~Vva~s~~D 185 (319)
T PRK04452 163 ---NYKKIAAAAMAYGHAVIAWSPLD 185 (319)
T ss_pred ---HHHHHHHHHHHhCCeEEEEcHHH
Confidence 13469999999999999987653
No 51
>PRK07328 histidinol-phosphatase; Provisional
Probab=54.30 E-value=1.5e+02 Score=26.05 Aligned_cols=99 Identities=12% Similarity=0.223 Sum_probs=55.4
Q ss_pred HHHHHHHhhcCCCcccEEEEecCCCCC------------CcHHHHH----HHHHHHHHcCcccEEEecCC-------C--
Q 022300 63 ESIDVSRRRMDVPCLDMLQFHWWDYSN------------PGYLDAL----NHLTDLKEEGKIKTVALTNF-------D-- 117 (299)
Q Consensus 63 ~~ve~SL~~Lg~d~iDl~~lH~pd~~~------------~~~~~~~----~~L~~l~~~Gkir~iGvs~~-------~-- 117 (299)
..+++.|++-..||+ |.-+|+.+... ...++++ +.+.++.+.|.+.-+|--.. .
T Consensus 95 ~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~i~~~~~~~~~ 173 (269)
T PRK07328 95 EFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPDLIKKFGHRPRE 173 (269)
T ss_pred HHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHHcCCCCch
Confidence 445555666666777 77789853210 1122333 35777888899888884432 1
Q ss_pred ------HHHHHHHHHcCCCeeEeeecc--cccccChhhHHHHHHHHhCCeEEE
Q 022300 118 ------TERLRIILENGIPVVSNQVQH--SVVDMRPQQKMAELCQLTGVKLIT 162 (299)
Q Consensus 118 ------~~~l~~~~~~~~~~~~~q~~~--n~~~~~~~~~~~~~~~~~gi~v~~ 162 (299)
.+.++.+.+.+..+.+|-..+ ..-+.-+...+++.|++.|+.++.
T Consensus 174 ~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~~iti 226 (269)
T PRK07328 174 DLTELYEEALDVIAAAGLALEVNTAGLRKPVGEIYPSPALLRACRERGIPVVL 226 (269)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCHHHHHHHHHcCCCEEE
Confidence 112233333466666665322 111223345789999999987543
No 52
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=54.21 E-value=97 Score=26.40 Aligned_cols=74 Identities=14% Similarity=0.126 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEec-CCCHHHHHHHHHcCCCeeEee
Q 022300 57 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQ 135 (299)
Q Consensus 57 ~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs-~~~~~~l~~~~~~~~~~~~~q 135 (299)
+.+.++.+. .+|.|++=+.+...-..... .+....+.... .+.+..+||. +-+++.+.++++. ..++++|
T Consensus 12 ~~eda~~~~-----~~Gad~iGfI~~~~S~R~V~--~~~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~-~~~d~vQ 82 (210)
T PRK01222 12 TPEDAEAAA-----ELGADAIGFVFYPKSPRYVS--PEQAAELAAAL-PPFVKVVGVFVNASDEEIDEIVET-VPLDLLQ 82 (210)
T ss_pred cHHHHHHHH-----HcCCCEEEEccCCCCCCcCC--HHHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHh-cCCCEEE
Confidence 455554443 58999988864332111111 33334443332 3568999988 6688888888775 5689999
Q ss_pred eccc
Q 022300 136 VQHS 139 (299)
Q Consensus 136 ~~~n 139 (299)
++-+
T Consensus 83 LHg~ 86 (210)
T PRK01222 83 LHGD 86 (210)
T ss_pred ECCC
Confidence 9765
No 53
>PRK05414 urocanate hydratase; Provisional
Probab=53.55 E-value=40 Score=32.79 Aligned_cols=85 Identities=14% Similarity=0.085 Sum_probs=62.3
Q ss_pred hhhcCCCcEEEEecccCCCC----------------CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHH
Q 022300 35 VERGHQSSWISLTKWVPPPV----------------KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNH 98 (299)
Q Consensus 35 lg~~~R~~i~I~tK~~~~~~----------------~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~ 98 (299)
+|.-++.++|+++=+|.=.. ..++..| -+|+.+.|+|.+- .+++++++.
T Consensus 161 f~g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~ri-------~kR~~~gyld~~~--------~~Ldeal~~ 225 (556)
T PRK05414 161 FGGDLAGRLVLTAGLGGMGGAQPLAATMAGAVCLAVEVDESRI-------DKRLRTGYLDEKA--------DDLDEALAL 225 (556)
T ss_pred cCCCCceeEEEEecCCccccccHHHHHhcCceEEEEEECHHHH-------HHHHhCCcceeEc--------CCHHHHHHH
Confidence 33336889999999874100 1233433 4566778888652 238999999
Q ss_pred HHHHHHcCcccEEEecCCCHHHHHHHHHcCCCeeEe
Q 022300 99 LTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN 134 (299)
Q Consensus 99 L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~ 134 (299)
.++.+++|+..+||+-.--.+.+.++++.++.|+++
T Consensus 226 ~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlv 261 (556)
T PRK05414 226 AEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLV 261 (556)
T ss_pred HHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCcc
Confidence 999999999999999987888889998887666655
No 54
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=53.41 E-value=99 Score=27.39 Aligned_cols=105 Identities=8% Similarity=0.046 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCC-----cHHHHHHHHHHHHHcCcccEEEecCCC---HHHHHHHHH
Q 022300 55 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNP-----GYLDALNHLTDLKEEGKIKTVALTNFD---TERLRIILE 126 (299)
Q Consensus 55 ~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~-----~~~~~~~~L~~l~~~Gkir~iGvs~~~---~~~l~~~~~ 126 (299)
.++.+...+ +-+.|.++|+|+|++-+......... ...+.++.+.++.+ +..+-.+++... .+.+..+..
T Consensus 16 ~f~~~~~~~-ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~~ 93 (266)
T cd07944 16 DFGDEFVKA-IYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPASG 93 (266)
T ss_pred cCCHHHHHH-HHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHhc
Confidence 456666555 44559999999999987654321100 01355555555543 245555555333 456666655
Q ss_pred cCCCeeEeeecccccccChhhHHHHHHHHhCCeEEEc
Q 022300 127 NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 163 (299)
Q Consensus 127 ~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~ 163 (299)
.+++..-+....|. -..-.+.+++++++|+.|...
T Consensus 94 ~gv~~iri~~~~~~--~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 94 SVVDMIRVAFHKHE--FDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred CCcCEEEEeccccc--HHHHHHHHHHHHHCCCeEEEE
Confidence 55443333333332 222356889999999876653
No 55
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=53.41 E-value=52 Score=27.85 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCcccEEEecCC-CHHHHHHHHHcCCCeeEeeecccccccChhhHHHHHHHHhCCeEEE
Q 022300 95 ALNHLTDLKEEGKIKTVALTNF-DTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 162 (299)
Q Consensus 95 ~~~~L~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~ 162 (299)
.++.++.++++-.=-.||..+- +.++++.+++.|-.|.+. +....+++++|+++|+.++.
T Consensus 46 a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivS--------P~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 46 ALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVS--------PGFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp HHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEE--------SS--HHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEEC--------CCCCHHHHHHHHHcCCcccC
Confidence 3445555554422255888854 789999999987666532 33346899999999998887
No 56
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=52.84 E-value=54 Score=27.92 Aligned_cols=74 Identities=15% Similarity=0.243 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEec-CCCHHHHHHHHHcCCCeeEee
Q 022300 57 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQ 135 (299)
Q Consensus 57 ~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs-~~~~~~l~~~~~~~~~~~~~q 135 (299)
+.+.++. ...+|.||+=+.+...-..... .+....+.... .+.++.+||. |-+++.+.++.+. ..++++|
T Consensus 10 ~~eda~~-----~~~~GaD~iGfIf~~~SpR~V~--~~~a~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~-~~~d~vQ 80 (207)
T PRK13958 10 TIKDVTA-----ASQLPIDAIGFIHYEKSKRHQT--ITQIKKLASAV-PNHIDKVCVVVNPDLTTIEHILSN-TSINTIQ 80 (207)
T ss_pred cHHHHHH-----HHHcCCCEEEEecCCCCcccCC--HHHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHh-CCCCEEE
Confidence 4555544 4458999998874442111122 23334444433 3568899986 8889999998875 6689999
Q ss_pred eccc
Q 022300 136 VQHS 139 (299)
Q Consensus 136 ~~~n 139 (299)
++-+
T Consensus 81 LHG~ 84 (207)
T PRK13958 81 LHGT 84 (207)
T ss_pred ECCC
Confidence 9864
No 57
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=52.49 E-value=28 Score=33.25 Aligned_cols=84 Identities=18% Similarity=0.179 Sum_probs=62.1
Q ss_pred CCCcEEEEecccCCC--C--------------CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHH
Q 022300 39 HQSSWISLTKWVPPP--V--------------KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDL 102 (299)
Q Consensus 39 ~R~~i~I~tK~~~~~--~--------------~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l 102 (299)
++.++++++-+|.=. + ..+.+.| -+||.+.|+|.. ....+++++-.++.
T Consensus 165 L~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI-------~~Rl~t~y~d~~--------a~~ldeAl~~a~~~ 229 (561)
T COG2987 165 LKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRI-------DKRLRTGYLDEI--------AETLDEALALAEEA 229 (561)
T ss_pred ccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHH-------HHHHhcchhhhh--------cCCHHHHHHHHHHH
Confidence 588999999887310 0 1122222 356777888752 33489999999999
Q ss_pred HHcCcccEEEecCCCHHHHHHHHHcCCCeeEeeec
Q 022300 103 KEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQ 137 (299)
Q Consensus 103 ~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~ 137 (299)
.+.|+-.+||+-.--.+.+.++++.++.|+++-=+
T Consensus 230 ~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQ 264 (561)
T COG2987 230 TAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQ 264 (561)
T ss_pred HhcCCceEEEEeccHHHHHHHHHHcCCCCceeccc
Confidence 99999999999988888899999988777776433
No 58
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=52.21 E-value=1.7e+02 Score=25.83 Aligned_cols=74 Identities=11% Similarity=0.003 Sum_probs=60.9
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHc
Q 022300 53 PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN 127 (299)
Q Consensus 53 ~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~ 127 (299)
..+.+.+...+-.+-..+-++++.|=|=.+..+..-.++..+++++-+.|+++|.+-. =+++-++...+++.+.
T Consensus 70 aG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vl-pyc~dd~~~ar~l~~~ 143 (248)
T cd04728 70 AGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVL-PYCTDDPVLAKRLEDA 143 (248)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHc
Confidence 4577899999999999999999999999999888888889999999999999998543 3455566666666654
No 59
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=52.10 E-value=1.7e+02 Score=25.80 Aligned_cols=103 Identities=16% Similarity=0.048 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHc--CCCeeE
Q 022300 56 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN--GIPVVS 133 (299)
Q Consensus 56 ~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~--~~~~~~ 133 (299)
.+++.+.+..++.++ -|.|+||+-. .|. ..+..++....+..+++.-. .-|.+-+++++.++++++. |.. -+
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~-~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~G~~-iI 96 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYG-GLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQGKC-VV 96 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCC-CCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCCCCc-EE
Confidence 467888888887765 5999999865 233 22213333333333332212 2378889999999999986 532 33
Q ss_pred eeecccccccChhhHHHHHHHHhCCeEEEccc
Q 022300 134 NQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 165 (299)
Q Consensus 134 ~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~p 165 (299)
+-+.....+ .....+++.+++.|..++.+..
T Consensus 97 NsIs~~~~~-e~~~~~~~~~~~~~~~vV~m~~ 127 (252)
T cd00740 97 NSINLEDGE-ERFLKVARLAKEHGAAVVVLAF 127 (252)
T ss_pred EeCCCCCCc-cccHHHHHHHHHhCCCEEEecc
Confidence 332221111 1134678899999999998743
No 60
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=51.97 E-value=1.7e+02 Score=25.92 Aligned_cols=106 Identities=13% Similarity=0.224 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEec-CC-----CCCCcHHHHHHHHHHHHHcCcccEEEecCCCH---------HH
Q 022300 56 MTSSIVRESIDVSRRRMDVPCLDMLQFHW-WD-----YSNPGYLDALNHLTDLKEEGKIKTVALTNFDT---------ER 120 (299)
Q Consensus 56 ~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~-pd-----~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~---------~~ 120 (299)
.+...+...+.. +..+|++ +++.|-. +. .....+....+-++.+++..---+||+..+.. ++
T Consensus 70 ~n~~~l~~~L~~-~~~~Gi~--nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~ 146 (272)
T TIGR00676 70 ATREEIREILRE-YRELGIR--HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEED 146 (272)
T ss_pred CCHHHHHHHHHH-HHHCCCC--EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHH
Confidence 456667666664 3667743 2333432 21 01111334555555555542235788876421 23
Q ss_pred HHHHHH---cCCCeeEeeecccccccChhhHHHHHHHHhCCeEEEccccccccc
Q 022300 121 LRIILE---NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLL 171 (299)
Q Consensus 121 l~~~~~---~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G~L 171 (299)
++.+.+ .|-.+.+-|.-|+. ..-..+++.|++.|+++ |+--|++
T Consensus 147 ~~~L~~K~~aGA~f~iTQ~~fd~---~~~~~~~~~~~~~gi~~----PIi~Gi~ 193 (272)
T TIGR00676 147 IENLKRKVDAGADYAITQLFFDN---DDYYRFVDRCRAAGIDV----PIIPGIM 193 (272)
T ss_pred HHHHHHHHHcCCCeEeeccccCH---HHHHHHHHHHHHcCCCC----CEecccC
Confidence 333333 37789999999987 22346888999998775 6655643
No 61
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=51.54 E-value=1.2e+02 Score=28.12 Aligned_cols=77 Identities=18% Similarity=0.054 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHc-Ccc---cEEEe--cCCCHHHHHHHHHc--CCCeeEeeecccccccC-----hh---hHHHHHHHH
Q 022300 92 YLDALNHLTDLKEE-GKI---KTVAL--TNFDTERLRIILEN--GIPVVSNQVQHSVVDMR-----PQ---QKMAELCQL 155 (299)
Q Consensus 92 ~~~~~~~L~~l~~~-Gki---r~iGv--s~~~~~~l~~~~~~--~~~~~~~q~~~n~~~~~-----~~---~~~~~~~~~ 155 (299)
++++.+++.+..+. |+- -++=+ -|.+.+.+.++.+. +.++.++-++||+.... .. ..+.+..++
T Consensus 225 l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L~~ 304 (344)
T PRK14464 225 PEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARYLHR 304 (344)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHHHHH
Confidence 67888888777654 321 11112 27788888888876 67889999999985431 11 346777888
Q ss_pred hCCeEEEcccccc
Q 022300 156 TGVKLITYGTVMG 168 (299)
Q Consensus 156 ~gi~v~~~~pl~~ 168 (299)
+|+.+......+.
T Consensus 305 ~gi~~tiR~~~G~ 317 (344)
T PRK14464 305 RGVLTKVRNSAGQ 317 (344)
T ss_pred CCceEEEECCCCC
Confidence 9999999888766
No 62
>PRK00208 thiG thiazole synthase; Reviewed
Probab=50.96 E-value=1.8e+02 Score=25.72 Aligned_cols=74 Identities=12% Similarity=0.022 Sum_probs=61.2
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHc
Q 022300 53 PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN 127 (299)
Q Consensus 53 ~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~ 127 (299)
..+.+.+...+-.+-..+-++++.|=|=.+..+....++..+++++-+.|+++|.+-. =+++-++...+++.+.
T Consensus 70 aG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vl-pyc~~d~~~ak~l~~~ 143 (250)
T PRK00208 70 AGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVL-PYCTDDPVLAKRLEEA 143 (250)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHc
Confidence 4577899999999999999999999999999888888889999999999999998643 3455567776666664
No 63
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=50.82 E-value=1.7e+02 Score=25.59 Aligned_cols=99 Identities=7% Similarity=0.012 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHc-CcccEEEecCCCHHHHHHHHHcCCCeeE
Q 022300 55 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE-GKIKTVALTNFDTERLRIILENGIPVVS 133 (299)
Q Consensus 55 ~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~-Gkir~iGvs~~~~~~l~~~~~~~~~~~~ 133 (299)
.++.+...+-++ .|.++|+++|.+-+ |... +.-++.++.+.+. ..++..+++..+.+.++.+.+.+++..-
T Consensus 16 ~~~~~~k~~i~~-~L~~~Gv~~iE~g~---p~~~----~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~ 87 (259)
T cd07939 16 AFSREEKLAIAR-ALDEAGVDEIEVGI---PAMG----EEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVH 87 (259)
T ss_pred CCCHHHHHHHHH-HHHHcCCCEEEEec---CCCC----HHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEE
Confidence 456666655555 49999999999963 3211 1224556666663 3467777777778888888877554332
Q ss_pred eeecccccc------cCh------hhHHHHHHHHhCCeEE
Q 022300 134 NQVQHSVVD------MRP------QQKMAELCQLTGVKLI 161 (299)
Q Consensus 134 ~q~~~n~~~------~~~------~~~~~~~~~~~gi~v~ 161 (299)
+-+..|..+ ... -.+.+++|+++|+.+.
T Consensus 88 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 127 (259)
T cd07939 88 ISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS 127 (259)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 222222211 111 1357889999998765
No 64
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=50.48 E-value=1.1e+02 Score=27.54 Aligned_cols=100 Identities=9% Similarity=0.065 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEe-cCCCCC-C---cHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHcCCC
Q 022300 56 MTSSIVRESIDVSRRRMDVPCLDMLQFH-WWDYSN-P---GYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 130 (299)
Q Consensus 56 ~~~~~i~~~ve~SL~~Lg~d~iDl~~lH-~pd~~~-~---~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~ 130 (299)
.+.+.+.+..++.+ .-|.|-||+---- +|.... + .++.+...++.+++.-.+ -|.|-++.++.++++++.|..
T Consensus 35 ~~~~~a~~~a~~~~-~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~-~ISIDT~~~~va~~AL~~Gad 112 (282)
T PRK11613 35 NSLIDAVKHANLMI-NAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEV-WISVDTSKPEVIRESAKAGAH 112 (282)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEECCCHHHHHHHHHcCCC
Confidence 35666666666544 5588888886433 354322 1 133467777888765333 488889999999999998755
Q ss_pred eeEeeecccccccChhhHHHHHHHHhCCeEEEc
Q 022300 131 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 163 (299)
Q Consensus 131 ~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~ 163 (299)
+. |-+ .+ +. +.++++.+++.|..++.+
T Consensus 113 iI-NDI-~g-~~---d~~~~~~~a~~~~~vVlm 139 (282)
T PRK11613 113 II-NDI-RS-LS---EPGALEAAAETGLPVCLM 139 (282)
T ss_pred EE-EEC-CC-CC---CHHHHHHHHHcCCCEEEE
Confidence 42 222 12 21 236788899999999887
No 65
>PRK13796 GTPase YqeH; Provisional
Probab=50.34 E-value=2.1e+02 Score=26.55 Aligned_cols=106 Identities=14% Similarity=0.138 Sum_probs=68.4
Q ss_pred eeeccccccCCCccHHHhhh--cCCCcEEEEecccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHH
Q 022300 18 ITMGLLKISMASSSIEFVER--GHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDA 95 (299)
Q Consensus 18 ~~~g~~~~~~ag~sE~~lg~--~~R~~i~I~tK~~~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~ 95 (299)
|.+=+.-+|+.+.-...+.+ ..+.-++|.+|.--.......+.+.+-+..-.+.+|....|++++..-. . ..++++
T Consensus 73 Iv~VVD~~D~~~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~-g-~gI~eL 150 (365)
T PRK13796 73 VVNVVDIFDFNGSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQK-G-HGIDEL 150 (365)
T ss_pred EEEEEECccCCCchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCC-C-CCHHHH
Confidence 33334445544433333333 2456788999985322333456666666766777786656777775432 2 237889
Q ss_pred HHHHHHHHHcCcccEEEecCCCHHHHHHHH
Q 022300 96 LNHLTDLKEEGKIKTVALTNFDTERLRIIL 125 (299)
Q Consensus 96 ~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~ 125 (299)
++.+.+..+.+.+--+|.+|-....+...+
T Consensus 151 ~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L 180 (365)
T PRK13796 151 LEAIEKYREGRDVYVVGVTNVGKSTLINRI 180 (365)
T ss_pred HHHHHHhcCCCeEEEEcCCCCcHHHHHHHH
Confidence 999988888889999999999987765544
No 66
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=50.31 E-value=2.2e+02 Score=26.71 Aligned_cols=89 Identities=15% Similarity=0.072 Sum_probs=59.9
Q ss_pred EEEecCCCC----------CCcHHHHHHHHHHHHHc-Cc---ccEEEec--CCCHHHHHHHHHc--CC---CeeEeeecc
Q 022300 80 LQFHWWDYS----------NPGYLDALNHLTDLKEE-GK---IKTVALT--NFDTERLRIILEN--GI---PVVSNQVQH 138 (299)
Q Consensus 80 ~~lH~pd~~----------~~~~~~~~~~L~~l~~~-Gk---ir~iGvs--~~~~~~l~~~~~~--~~---~~~~~q~~~ 138 (299)
+-||.++.. ...++++++++.+..++ |+ |.++=+. |.+.+.+.++.+. +. ...++-++|
T Consensus 242 vSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpy 321 (373)
T PRK14459 242 VSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPL 321 (373)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEcc
Confidence 567877522 12378899998887744 54 3333333 6677777766665 44 689999999
Q ss_pred cccccC----h----hhHHHHHHHHhCCeEEEcccccc
Q 022300 139 SVVDMR----P----QQKMAELCQLTGVKLITYGTVMG 168 (299)
Q Consensus 139 n~~~~~----~----~~~~~~~~~~~gi~v~~~~pl~~ 168 (299)
|++... + -..+.+..+++|+.+......+.
T Consensus 322 Np~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 322 NPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCc
Confidence 986431 1 13477888899999999877765
No 67
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=50.19 E-value=98 Score=24.67 Aligned_cols=62 Identities=11% Similarity=0.141 Sum_probs=44.2
Q ss_pred CCcEEEEecccCCCCCCCHHHHHHHHHHHHhhc--CCCcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 022300 40 QSSWISLTKWVPPPVKMTSSIVRESIDVSRRRM--DVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 105 (299)
Q Consensus 40 R~~i~I~tK~~~~~~~~~~~~i~~~ve~SL~~L--g~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~ 105 (299)
|=.+.|+-|+|.. .....|++.+.++.+.. .....|++++...... ..++++...|..+..+
T Consensus 47 RlG~sVSKKvg~A---V~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~-~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 47 KVGITVSKKFGKA---HQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQ-PDFLKLLQDFLQQIPE 110 (138)
T ss_pred eEEEEEecccccc---hhHHHHHHHHHHHHHHhhcccCCceEEEEeccccC-CCHHHHHHHHHHHHHH
Confidence 5578888888763 34566666666666654 3457999999998776 4488887777777665
No 68
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=49.73 E-value=2.2e+02 Score=26.44 Aligned_cols=94 Identities=13% Similarity=0.104 Sum_probs=59.3
Q ss_pred CcccEEE-EecCCCC----------CCcHHHHHHHHHHHHHc-Cc---ccEEEec--CCCHHHHHHHHHc--CC-----C
Q 022300 75 PCLDMLQ-FHWWDYS----------NPGYLDALNHLTDLKEE-GK---IKTVALT--NFDTERLRIILEN--GI-----P 130 (299)
Q Consensus 75 d~iDl~~-lH~pd~~----------~~~~~~~~~~L~~l~~~-Gk---ir~iGvs--~~~~~~l~~~~~~--~~-----~ 130 (299)
.++||.+ ||.++.. ...++++++++.+..++ |. |+++=+. |.+.+.+.++.+. +. .
T Consensus 203 ~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~ 282 (347)
T PRK14453 203 PQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHL 282 (347)
T ss_pred cCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCc
Confidence 3577755 7766321 12266777776666553 43 2233232 6677787777765 22 4
Q ss_pred eeEeeecccccccC------h----hhHHHHHHHHhCCeEEEcccccc
Q 022300 131 VVSNQVQHSVVDMR------P----QQKMAELCQLTGVKLITYGTVMG 168 (299)
Q Consensus 131 ~~~~q~~~n~~~~~------~----~~~~~~~~~~~gi~v~~~~pl~~ 168 (299)
..++-++||.+... + -..+.+..+++|+.+......+.
T Consensus 283 ~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~ 330 (347)
T PRK14453 283 YHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQFGS 330 (347)
T ss_pred ceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 67999999986432 1 13467788888999998877766
No 69
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=49.26 E-value=1.4e+02 Score=28.02 Aligned_cols=78 Identities=10% Similarity=0.056 Sum_probs=53.4
Q ss_pred cHHHHHHHHHH-HHHcCc---ccEEEec--CCCHHHHHHHHHc--CCCeeEeeecccccccCh--------hhHHHHHHH
Q 022300 91 GYLDALNHLTD-LKEEGK---IKTVALT--NFDTERLRIILEN--GIPVVSNQVQHSVVDMRP--------QQKMAELCQ 154 (299)
Q Consensus 91 ~~~~~~~~L~~-l~~~Gk---ir~iGvs--~~~~~~l~~~~~~--~~~~~~~q~~~n~~~~~~--------~~~~~~~~~ 154 (299)
.++++++++.+ +.+.|+ |+++=+. |.+.+.+.++.+. +....++-++||.+.... -..+.+..+
T Consensus 260 ~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~L~ 339 (368)
T PRK14456 260 PLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSIVNIKFEPVCSSTRERFRDRLL 339 (368)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccCCCCCCCCCCHHHHHHHHHHHH
Confidence 37888998875 445552 3333333 5666677777665 456788889999875422 235677788
Q ss_pred HhCCeEEEcccccc
Q 022300 155 LTGVKLITYGTVMG 168 (299)
Q Consensus 155 ~~gi~v~~~~pl~~ 168 (299)
++|+.++.....+.
T Consensus 340 ~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 340 DAGLQVTVRKSYGT 353 (368)
T ss_pred HCCCcEEeeCCCCc
Confidence 89999999877765
No 70
>PRK02399 hypothetical protein; Provisional
Probab=48.84 E-value=45 Score=31.54 Aligned_cols=63 Identities=21% Similarity=0.273 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEE--------------EecCCCHHHHHHHHH
Q 022300 61 VRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV--------------ALTNFDTERLRIILE 126 (299)
Q Consensus 61 i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~i--------------Gvs~~~~~~l~~~~~ 126 (299)
....+...|+..| .|.+.+|--.... ++||+|.++|.+..+ |+-+-.++++..+.+
T Consensus 200 ~v~~~~~~Le~~G---yEvlVFHATG~GG-------raME~Li~~G~~~gVlDlTttEv~d~l~GGv~sagp~Rl~Aa~~ 269 (406)
T PRK02399 200 CVQAAREELEARG---YEVLVFHATGTGG-------RAMEKLIDSGLIAGVLDLTTTEVCDELFGGVLAAGPDRLEAAAR 269 (406)
T ss_pred HHHHHHHHHHhCC---CeEEEEcCCCCch-------HHHHHHHHcCCceEEEEcchHHHHHHHhCcCccCCccHHHHHHH
Confidence 3344444444444 7999999743322 589999999998764 444445555555555
Q ss_pred cCCCeeE
Q 022300 127 NGIPVVS 133 (299)
Q Consensus 127 ~~~~~~~ 133 (299)
.++|..+
T Consensus 270 ~gIP~Vv 276 (406)
T PRK02399 270 TGIPQVV 276 (406)
T ss_pred cCCCEEe
Confidence 5555443
No 71
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=48.46 E-value=2.3e+02 Score=26.39 Aligned_cols=77 Identities=13% Similarity=0.161 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHH-HcCc---ccEEEec--CCCHHHHHHHHHc--CCCeeEeeeccccccc----Chh----hHHHHHHHH
Q 022300 92 YLDALNHLTDLK-EEGK---IKTVALT--NFDTERLRIILEN--GIPVVSNQVQHSVVDM----RPQ----QKMAELCQL 155 (299)
Q Consensus 92 ~~~~~~~L~~l~-~~Gk---ir~iGvs--~~~~~~l~~~~~~--~~~~~~~q~~~n~~~~----~~~----~~~~~~~~~ 155 (299)
++++++++.... +.|+ |+++=+. |.+.+.++++.+. +.+..++-++||.... .+. ..+.+..++
T Consensus 246 l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~~~~~~~ps~e~i~~f~~~l~~ 325 (356)
T PRK14462 246 IESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHEGSKFERPSLEDMIKFQDYLNS 325 (356)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 577888887554 4454 3333333 6778888887775 5678999999998652 122 234556777
Q ss_pred hCCeEEEcccccc
Q 022300 156 TGVKLITYGTVMG 168 (299)
Q Consensus 156 ~gi~v~~~~pl~~ 168 (299)
+|+.+......+.
T Consensus 326 ~gi~vtvR~~~G~ 338 (356)
T PRK14462 326 KGLLCTIRESKGL 338 (356)
T ss_pred CCCcEEEeCCCCC
Confidence 8999999877765
No 72
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=48.19 E-value=1.7e+02 Score=27.10 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=58.2
Q ss_pred CCCcEEEEecccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCH
Q 022300 39 HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT 118 (299)
Q Consensus 39 ~R~~i~I~tK~~~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~ 118 (299)
...-++|.+|+---....+.+.+.+-+.+-++..|....|++.+-. -.... ++++++.+.++.+.+.+-.+|.+|-..
T Consensus 90 ~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSA-k~g~g-v~eL~~~l~~~~~~~~v~~vG~~nvGK 167 (360)
T TIGR03597 90 GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSA-KKGNG-IDELLDKIKKARNKKDVYVVGVTNVGK 167 (360)
T ss_pred CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecC-CCCCC-HHHHHHHHHHHhCCCeEEEECCCCCCH
Confidence 3556888999853223344666777676667777765456666543 22333 789999998887777899999999988
Q ss_pred HHHHHHH
Q 022300 119 ERLRIIL 125 (299)
Q Consensus 119 ~~l~~~~ 125 (299)
..+...+
T Consensus 168 StliN~l 174 (360)
T TIGR03597 168 SSLINKL 174 (360)
T ss_pred HHHHHHH
Confidence 7664443
No 73
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=48.14 E-value=1.6e+02 Score=25.93 Aligned_cols=105 Identities=12% Similarity=0.087 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCC-----CCCcHHHHHHHHHHHHHc-CcccEEEec---CCCHHHHHHHH
Q 022300 55 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY-----SNPGYLDALNHLTDLKEE-GKIKTVALT---NFDTERLRIIL 125 (299)
Q Consensus 55 ~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~-----~~~~~~~~~~~L~~l~~~-Gkir~iGvs---~~~~~~l~~~~ 125 (299)
.++.+...+-++ .|.++|+++|.+-+...... ... ...-++.++.+++. +.++...+. .-....++.+.
T Consensus 18 ~~~~~~k~~i~~-~L~~~Gv~~iEvg~~~~~~~~~~~~~~~-~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~ 95 (263)
T cd07943 18 QFTLEQVRAIAR-ALDAAGVPLIEVGHGDGLGGSSLNYGFA-AHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAA 95 (263)
T ss_pred ecCHHHHHHHHH-HHHHcCCCEEEeecCCCCCCcccccCCC-CCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHH
Confidence 356666655555 49999999999986532110 001 11234455555443 345655554 22456677777
Q ss_pred HcCCCeeEeeecccccccChhhHHHHHHHHhCCeEEEc
Q 022300 126 ENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 163 (299)
Q Consensus 126 ~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~ 163 (299)
+.+++ .+.+-...-+...-.+.+++++++|+.+...
T Consensus 96 ~~g~~--~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 96 DLGVD--VVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred HcCCC--EEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 66543 3333333222222356889999999876553
No 74
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=47.66 E-value=69 Score=28.97 Aligned_cols=73 Identities=11% Similarity=0.136 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCccc-EEEecCCCHHHHHHHHHcCCCeeEeeecccccc-cChhhHHHHHHHHhCCeEEEccccccc
Q 022300 96 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVD-MRPQQKMAELCQLTGVKLITYGTVMGG 169 (299)
Q Consensus 96 ~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~-~~~~~~~~~~~~~~gi~v~~~~pl~~G 169 (299)
++.+.+|++...|. ..|=+-++.+.++.+++. ...+++|+..+.+- -..-..+..+|+++|+.++..+-+..+
T Consensus 217 ~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~-~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 217 DDGLAYLRDKSPLPIMADESCFSAADAARLAGG-GAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhc-CCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECchhhH
Confidence 44566666665555 334455677777777775 34666676655431 112346899999999999987666554
No 75
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=46.94 E-value=1.4e+02 Score=27.07 Aligned_cols=109 Identities=14% Similarity=0.147 Sum_probs=66.1
Q ss_pred CcccEEEecCCCHHHHHHHHHc--CCCeeEeeeccccccc---ChhhHHHHHHHHhCCeEEEcccccccccCCcccCCCC
Q 022300 106 GKIKTVALTNFDTERLRIILEN--GIPVVSNQVQHSVVDM---RPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNL 180 (299)
Q Consensus 106 Gkir~iGvs~~~~~~l~~~~~~--~~~~~~~q~~~n~~~~---~~~~~~~~~~~~~gi~v~~~~pl~~G~L~~~~~~~~~ 180 (299)
.++--+-=.+++.+.+.++.+. .-.+.+.-..+|-++. ..+..+.++|++-++-++.-+.-.
T Consensus 156 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~S------------- 222 (298)
T PRK01045 156 DKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNS------------- 222 (298)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCC-------------
Confidence 4444444447777777666654 1112221222444433 224568888888886666521111
Q ss_pred CCCCCCCCCCCchhHHHHhhhhhcCCchHHHHHHHHHHHHHHHhCC------CHHHHHHHHHHhCCCCceeeeccCCCCH
Q 022300 181 SIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIGVRLGLA 254 (299)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~aq~al~~~l~~~~v~~~i~g~~~~~~ 254 (299)
-| -..|.++|++.+. +..++-..|+.....| .+..|+| +|
T Consensus 223 --------sN-----------------------T~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~V-GitaGAS--TP 268 (298)
T PRK01045 223 --------SN-----------------------SNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTV-GVTAGAS--AP 268 (298)
T ss_pred --------cc-----------------------HHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEE-EEEecCC--CC
Confidence 01 2678889988874 7899999999766544 5788999 99
Q ss_pred HHHHHhH
Q 022300 255 EHIQDTN 261 (299)
Q Consensus 255 e~l~enl 261 (299)
+.|-+.+
T Consensus 269 ~~li~eV 275 (298)
T PRK01045 269 EWLVQEV 275 (298)
T ss_pred HHHHHHH
Confidence 9876655
No 76
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=46.66 E-value=1.1e+02 Score=26.81 Aligned_cols=21 Identities=0% Similarity=-0.018 Sum_probs=16.2
Q ss_pred hHHHHHHHHhCCeEEEccccc
Q 022300 147 QKMAELCQLTGVKLITYGTVM 167 (299)
Q Consensus 147 ~~~~~~~~~~gi~v~~~~pl~ 167 (299)
...+++|+..|...+...|..
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~ 113 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAH 113 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCC
Confidence 357899999999998766543
No 77
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=46.37 E-value=29 Score=23.46 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Q 022300 216 TLKRIASKHGVSIPVVAVRYILD 238 (299)
Q Consensus 216 ~l~~la~~~~~s~aq~al~~~l~ 238 (299)
-+.+||+++|+++.++|..|+.-
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~V 37 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAEV 37 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHH
Confidence 46789999999999999999753
No 78
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=46.29 E-value=54 Score=28.66 Aligned_cols=55 Identities=13% Similarity=0.045 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcc
Q 022300 54 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI 108 (299)
Q Consensus 54 ~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gki 108 (299)
.+.+.+...+..+-+.+-++++.|=|=.+..+..-.++..+++++-+.|+++|-+
T Consensus 71 Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~ 125 (247)
T PF05690_consen 71 GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFV 125 (247)
T ss_dssp T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-E
T ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCE
Confidence 4678999999999999999999999988888776667788999999999999864
No 79
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=45.76 E-value=1.7e+02 Score=23.92 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHc--C-CCeeEeeecccccc---cChhhHHHHHHHHhCCeEEEccc
Q 022300 92 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN--G-IPVVSNQVQHSVVD---MRPQQKMAELCQLTGVKLITYGT 165 (299)
Q Consensus 92 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~--~-~~~~~~q~~~n~~~---~~~~~~~~~~~~~~gi~v~~~~p 165 (299)
.+++++.-.+=-+++-|++|=|.+-+.+...++++. + .+..++-.++..-. .+.+.++-+..+++|..|+.-+-
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~sH 91 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQSH 91 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHHHcCceeeeehh
Confidence 467777777777788899999999888888888877 2 34444444443221 23356789999999988887555
Q ss_pred cccc
Q 022300 166 VMGG 169 (299)
Q Consensus 166 l~~G 169 (299)
...|
T Consensus 92 alSg 95 (186)
T COG1751 92 ALSG 95 (186)
T ss_pred hhhc
Confidence 4444
No 80
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=45.55 E-value=65 Score=30.55 Aligned_cols=93 Identities=11% Similarity=0.147 Sum_probs=57.2
Q ss_pred HHHHHHHHHHcCcccEEEecCCCHHHHHHHHHc----CCCeeEeeecccccccChhhHHHHHHHHhC--CeEEEcccccc
Q 022300 95 ALNHLTDLKEEGKIKTVALTNFDTERLRIILEN----GIPVVSNQVQHSVVDMRPQQKMAELCQLTG--VKLITYGTVMG 168 (299)
Q Consensus 95 ~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~----~~~~~~~q~~~n~~~~~~~~~~~~~~~~~g--i~v~~~~pl~~ 168 (299)
+++++.+..++++ ++...+++.+-..++. |+.|..+-...| .+.++.+++.+ ++++++ +|
T Consensus 123 iYqa~~~~~~k~~----~~~~mt~d~~~~~ie~qa~~GVDfmTiHcGi~-------~~~~~~~~~~~R~~giVSR---GG 188 (431)
T PRK13352 123 IYQAAVEAARKYG----SVVDMTEDDLFDVIEKQAKDGVDFMTIHCGVT-------RETLERLKKSGRIMGIVSR---GG 188 (431)
T ss_pred HHHHHHHHHhcCC----ChhhCCHHHHHHHHHHHHHhCCCEEEEccchh-------HHHHHHHHhcCCccCeecC---CH
Confidence 5677777755544 6678888888777665 777776655555 35677777654 566654 22
Q ss_pred cccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhhcCCchHHHHHHHHHHHHHHHhCCC
Q 022300 169 GLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVS 227 (299)
Q Consensus 169 G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s 227 (299)
.+++. +...-.+++-+-+-++.+-+|+++|.+|
T Consensus 189 s~~~~--------------------------WM~~n~~ENPlye~fD~lLeI~~~yDVt 221 (431)
T PRK13352 189 SFLAA--------------------------WMLHNNKENPLYEHFDYLLEILKEYDVT 221 (431)
T ss_pred HHHHH--------------------------HHHHcCCcCchHHHHHHHHHHHHHhCee
Confidence 22211 1112223333444478999999999876
No 81
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=45.47 E-value=3e+02 Score=26.89 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=46.1
Q ss_pred CCcEEEEecccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHH--------------Hc
Q 022300 40 QSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLK--------------EE 105 (299)
Q Consensus 40 R~~i~I~tK~~~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~--------------~~ 105 (299)
.+-|+|+|-+.+ +-|-+.++...+.++.+.++++.++.+..........-.+|+.++ +.
T Consensus 86 P~~I~V~sTC~s-------elIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~~al~~lv~~~~~~~~~~~~~~~~ 158 (511)
T TIGR01278 86 PDLIVVTPSCTS-------SLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAADRTLTQLVRRFAKEQPKPGRTTEK 158 (511)
T ss_pred CCEEEEeCCChH-------HHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHHHHHHHHHHHHHhccccccccCCC
Confidence 445677766633 333334444444455446899999998766542222222322222 24
Q ss_pred CcccEEEecCC------CHHHHHHHHHc-CCCe
Q 022300 106 GKIKTVALTNF------DTERLRIILEN-GIPV 131 (299)
Q Consensus 106 Gkir~iGvs~~------~~~~l~~~~~~-~~~~ 131 (299)
+.|.=||.++. +..+++.+++. |+.+
T Consensus 159 ~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~v 191 (511)
T TIGR01278 159 PSVNLLGPASLGFHHRHDLIELRRLLKTLGIEV 191 (511)
T ss_pred CcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 56778887753 33556666654 5443
No 82
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=44.71 E-value=2e+02 Score=28.53 Aligned_cols=52 Identities=25% Similarity=0.284 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhcCCCcccEEEEecC--CCCCCcHHHHHHHHHHHHHcCcccEEEe
Q 022300 59 SIVRESIDVSRRRMDVPCLDMLQFHWW--DYSNPGYLDALNHLTDLKEEGKIKTVAL 113 (299)
Q Consensus 59 ~~i~~~ve~SL~~Lg~d~iDl~~lH~p--d~~~~~~~~~~~~L~~l~~~Gkir~iGv 113 (299)
+...+-+++.++..+-.+.+ -|.. ......+.+.+..|.+++++|+||.+.+
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~---~~~ivvGFs~~~il~a~d~lielI~sGkIKgv~~ 413 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSE---KHKIVVGFSHESILAAADPLIELIASGKIKGVVV 413 (576)
T ss_pred hhHHHHHHHHHhccCCcccc---cceeEEeecHHHHHHHHHHHHHHHhcCCcceEEE
Confidence 77888899999988877777 2221 1111225577788899999999999753
No 83
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=43.94 E-value=2.2e+02 Score=24.86 Aligned_cols=73 Identities=10% Similarity=0.072 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCccc-EEEecCCCHHHHHHHHHcCCCeeEeeeccccccc-ChhhHHHHHHHHhCCeEEEccccccc
Q 022300 96 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 169 (299)
Q Consensus 96 ~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~~~~pl~~G 169 (299)
++.+.+|++.-.+. ..|=+-++...+..+++. ..++++|+..+..-. ..-..+.+.|+++|+.++..+.+.+|
T Consensus 169 ~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~-~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 169 LEGRAALARATDTPIMADESAFTPHDAFRELAL-GAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHh-CCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEecCccchH
Confidence 45566666665444 444455677788777765 346777777664322 22356899999999999987666554
No 84
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=43.93 E-value=1.9e+02 Score=24.22 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=68.3
Q ss_pred CcEEEEecccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCC--H
Q 022300 41 SSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD--T 118 (299)
Q Consensus 41 ~~i~I~tK~~~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~--~ 118 (299)
....+.-.+.+ ..+..+.....+...++..+..--.+++--...........+.+.+..+++.|- .+++.++. .
T Consensus 82 ~~~~l~ini~~--~~l~~~~~~~~~~~~l~~~~~~~~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~--~l~ld~~g~~~ 157 (240)
T cd01948 82 PDLRLSVNLSA--RQLRDPDFLDRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRALGV--RIALDDFGTGY 157 (240)
T ss_pred CCeEEEEECCH--HHhCCcHHHHHHHHHHHHcCCCHHHEEEEEecchhhCCHHHHHHHHHHHHHCCC--eEEEeCCCCcH
Confidence 34444444432 122345566778888888887653444333222222224568899999999998 56666554 3
Q ss_pred HHHHHHHHcCCCeeEeeeccccccc--------ChhhHHHHHHHHhCCeEEEc
Q 022300 119 ERLRIILENGIPVVSNQVQHSVVDM--------RPQQKMAELCQLTGVKLITY 163 (299)
Q Consensus 119 ~~l~~~~~~~~~~~~~q~~~n~~~~--------~~~~~~~~~~~~~gi~v~~~ 163 (299)
..+..+.. .+++++-+..+.+.. ..-..++..|+..|+.+++-
T Consensus 158 ~~~~~l~~--~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 208 (240)
T cd01948 158 SSLSYLKR--LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAE 208 (240)
T ss_pred hhHHHHHh--CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEE
Confidence 34444443 346665555444322 11245788999999988874
No 85
>PRK06424 transcription factor; Provisional
Probab=43.77 E-value=71 Score=25.63 Aligned_cols=31 Identities=10% Similarity=0.098 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhCCCC
Q 022300 212 VLLQTLKRIASKHGVSIPVVAVRYILDQPAV 242 (299)
Q Consensus 212 ~~~~~l~~la~~~~~s~aq~al~~~l~~~~v 242 (299)
...+.++.+.++.|+|..++|-+--.++..|
T Consensus 84 ~~g~~Ir~lRe~~GLSQ~eLA~~iGvs~stI 114 (144)
T PRK06424 84 DYAELVKNARERLSMSQADLAAKIFERKNVI 114 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHH
Confidence 3446778888888999888886655444333
No 86
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=43.11 E-value=2.1e+02 Score=24.37 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=55.6
Q ss_pred ccEEEEecCCCCCCcHHHHHHHHHHHHHcCccc-EEEecCCCHHHHHHHHHcCCCeeEeeeccccccc-ChhhHHHHHHH
Q 022300 77 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 154 (299)
Q Consensus 77 iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~ 154 (299)
.++.++-.|-... -++.+.+|.+...+. ..+=|-++.+.+..+++. ..++++|+..+.+-. ..-.++.+.|+
T Consensus 120 ~~i~~iEeP~~~~-----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~-~~~d~~~~k~~~~GGi~~~~~i~~~a~ 193 (229)
T cd00308 120 YGLAWIEEPCAPD-----DLEGYAALRRRTGIPIAADESVTTVDDALEALEL-GAVDILQIKPTRVGGLTESRRAADLAE 193 (229)
T ss_pred cCCCeEECCCCcc-----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHc-CCCCEEecCccccCCHHHHHHHHHHHH
Confidence 4555565553322 245667777776655 345556677777777665 346777777665321 12346889999
Q ss_pred HhCCeEEEccccccc
Q 022300 155 LTGVKLITYGTVMGG 169 (299)
Q Consensus 155 ~~gi~v~~~~pl~~G 169 (299)
++|+.++..+.+..|
T Consensus 194 ~~gi~~~~~~~~~s~ 208 (229)
T cd00308 194 AFGIRVMVHGTLESS 208 (229)
T ss_pred HcCCEEeecCCCCCH
Confidence 999999998776554
No 87
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=42.94 E-value=98 Score=27.81 Aligned_cols=116 Identities=17% Similarity=0.173 Sum_probs=63.5
Q ss_pred HHHHHHc--CcccEEEecCCCHHHHHHHHHc--CCCeeEeeecccccccC---hhhHHHHHHHHhCCeEEEccccccccc
Q 022300 99 LTDLKEE--GKIKTVALTNFDTERLRIILEN--GIPVVSNQVQHSVVDMR---PQQKMAELCQLTGVKLITYGTVMGGLL 171 (299)
Q Consensus 99 L~~l~~~--Gkir~iGvs~~~~~~l~~~~~~--~~~~~~~q~~~n~~~~~---~~~~~~~~~~~~gi~v~~~~pl~~G~L 171 (299)
++.+... +++-.+-=.+++.+.+.++.+. ...+...-..+|-++.. .+..+.++|++-++-++.-+.-..
T Consensus 146 ~~~l~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~Ss--- 222 (281)
T PF02401_consen 146 VEKLPISDPKKVAVVSQTTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNSS--- 222 (281)
T ss_dssp HHHGGGSSTTCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-H---
T ss_pred hcccCCCCCCeEEEEEeecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCCc---
Confidence 4444333 3666666667777777666554 11122222344444432 244577777777755555211110
Q ss_pred CCcccCCCCCCCCCCCCCCCchhHHHHhhhhhcCCchHHHHHHHHHHHHHHHhCC------CHHHHHHHHHHhCCCCcee
Q 022300 172 SEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGV------SIPVVAVRYILDQPAVAGS 245 (299)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~aq~al~~~l~~~~v~~~ 245 (299)
--..|.++|++.+. ++.++...|+.....| .+
T Consensus 223 -----------------------------------------NT~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~V-GI 260 (281)
T PF02401_consen 223 -----------------------------------------NTRKLAEIAKEHGKPTYHIETADELDPEWLKGVKKV-GI 260 (281)
T ss_dssp -----------------------------------------HHHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEE-EE
T ss_pred -----------------------------------------cHHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEE-EE
Confidence 12678999999874 7899999999887744 57
Q ss_pred eeccCCCCHHHHHHhH
Q 022300 246 MIGVRLGLAEHIQDTN 261 (299)
Q Consensus 246 i~g~~~~~~e~l~enl 261 (299)
..|+| +|+.+-+.+
T Consensus 261 taGAS--TP~~ii~eV 274 (281)
T PF02401_consen 261 TAGAS--TPDWIIEEV 274 (281)
T ss_dssp EE-TT--S-HHHHHHH
T ss_pred EccCC--CCHHHHHHH
Confidence 88999 999987765
No 88
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=42.91 E-value=57 Score=30.86 Aligned_cols=112 Identities=21% Similarity=0.305 Sum_probs=63.7
Q ss_pred ceeeccccccCCCc---cHHHhhhc--------C---------CCcEEEEecccCCCCCCCHHHHHHHHHHHHhhcCCCc
Q 022300 17 PITMGLLKISMASS---SIEFVERG--------H---------QSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPC 76 (299)
Q Consensus 17 ~~~~g~~~~~~ag~---sE~~lg~~--------~---------R~~i~I~tK~~~~~~~~~~~~i~~~ve~SL~~Lg~d~ 76 (299)
+|.+-..-.|.+|. +..+|..+ . .+-.+-.|-+|.. . .++++..+.|.-.-
T Consensus 141 DI~mm~SVvDiaGlN~isr~vL~NAA~Ai~GM~~~~~~~~~~~~kp~I~iTmfGvT------T---p~V~~~~~~Le~~G 211 (403)
T PF06792_consen 141 DITMMYSVVDIAGLNSISRRVLSNAAGAIAGMAKAYESPNQQEDKPLIGITMFGVT------T---PCVDAIRERLEEEG 211 (403)
T ss_pred CEEEeeeccccccCCHHHHHHHHHHHHHHHHHhcccccccccCCCcEEEEECCCCc------H---HHHHHHHHHHHhcC
Confidence 45555555566663 55666643 0 1234445555542 1 23333333333335
Q ss_pred ccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEE--------------EecCCCHHHHHHHHHcCCCeeEeeecccccc
Q 022300 77 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV--------------ALTNFDTERLRIILENGIPVVSNQVQHSVVD 142 (299)
Q Consensus 77 iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~i--------------Gvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~ 142 (299)
.+.+.+|--.... ++||+|.++|.+..+ |+.+-.++++..+.+.++|-.+.=..++..+
T Consensus 212 ~Ev~VFHAtG~GG-------~aME~Li~~G~~~~VlDlTttEl~d~l~GGv~sagp~Rl~AA~~~GIP~Vvs~GalDmVn 284 (403)
T PF06792_consen 212 YEVLVFHATGTGG-------RAMERLIREGQFDGVLDLTTTELADELFGGVLSAGPDRLEAAARAGIPQVVSPGALDMVN 284 (403)
T ss_pred CeEEEEcCCCCch-------HHHHHHHHcCCcEEEEECcHHHHHHHHhCCCCCCCchHHHHHHHcCCCEEEecCccceec
Confidence 7899999743221 589999999998864 4555566666666666666555544444444
Q ss_pred cC
Q 022300 143 MR 144 (299)
Q Consensus 143 ~~ 144 (299)
..
T Consensus 285 Fg 286 (403)
T PF06792_consen 285 FG 286 (403)
T ss_pred cC
Confidence 33
No 89
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=42.86 E-value=1.4e+02 Score=25.58 Aligned_cols=98 Identities=12% Similarity=0.145 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHH----cCCCe
Q 022300 56 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE----NGIPV 131 (299)
Q Consensus 56 ~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~----~~~~~ 131 (299)
++.+...+-++ .|.++|+++|.+- .|..... ..+.++.+.+.... .+-.+++......++.+.+ .+...
T Consensus 11 ~~~~~k~~i~~-~L~~~Gv~~iEvg---~~~~~~~-~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 11 FSTEEKLEIAK-ALDEAGVDYIEVG---FPFASED-DFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp --HHHHHHHHH-HHHHHTTSEEEEE---HCTSSHH-HHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSE
T ss_pred cCHHHHHHHHH-HHHHhCCCEEEEc---ccccCHH-HHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCE
Confidence 55555555554 5999999999988 3222222 23445555555555 4445566667777777555 35554
Q ss_pred eEeeeccccccc------------ChhhHHHHHHHHhCCeE
Q 022300 132 VSNQVQHSVVDM------------RPQQKMAELCQLTGVKL 160 (299)
Q Consensus 132 ~~~q~~~n~~~~------------~~~~~~~~~~~~~gi~v 160 (299)
..+-...|.... ..-.+.++++++.|..+
T Consensus 84 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 84 IRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 444444444111 11246799999999988
No 90
>PLN02363 phosphoribosylanthranilate isomerase
Probab=42.65 E-value=97 Score=27.42 Aligned_cols=83 Identities=11% Similarity=0.107 Sum_probs=51.4
Q ss_pred ecccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEec-CCCHHHHHHHH
Q 022300 47 TKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIIL 125 (299)
Q Consensus 47 tK~~~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs-~~~~~~l~~~~ 125 (299)
.|+++ -.+.+.++.+.+ +|.|++=+.+... .+..- ..+....+.+......++.+||. +-+.+.+.+++
T Consensus 49 VKICG---it~~eda~~a~~-----~GaD~iGfIf~~~-SpR~V-s~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~ 118 (256)
T PLN02363 49 VKMCG---ITSARDAAMAVE-----AGADFIGMILWPK-SKRSI-SLSVAKEISQVAREGGAKPVGVFVDDDANTILRAA 118 (256)
T ss_pred EEECC---CCcHHHHHHHHH-----cCCCEEEEecCCC-CCCcC-CHHHHHHHHHhccccCccEEEEEeCCCHHHHHHHH
Confidence 45543 235677766654 8999988864332 11111 13444444444443347789986 78888888887
Q ss_pred HcCCCeeEeeecccc
Q 022300 126 ENGIPVVSNQVQHSV 140 (299)
Q Consensus 126 ~~~~~~~~~q~~~n~ 140 (299)
+. ..++++|++-+.
T Consensus 119 ~~-~~ld~VQLHG~e 132 (256)
T PLN02363 119 DS-SDLELVQLHGNG 132 (256)
T ss_pred Hh-cCCCEEEECCCC
Confidence 75 678999998643
No 91
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.14 E-value=3.4e+02 Score=27.74 Aligned_cols=69 Identities=12% Similarity=0.011 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHc--CcccEEEecCCCHHHHHHHHHc
Q 022300 56 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE--GKIKTVALTNFDTERLRIILEN 127 (299)
Q Consensus 56 ~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~--Gkir~iGvs~~~~~~l~~~~~~ 127 (299)
.+.+.+++-++.....-.....-+|+|+..+... ...+.+|.+..++ +.+.+|.+++.....+..+.+.
T Consensus 104 ~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls---~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSR 174 (700)
T PRK12323 104 RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT---NHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 174 (700)
T ss_pred CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC---HHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHH
Confidence 3467777777665544444566789998876543 3566777777777 8999999998655555455443
No 92
>PRK15108 biotin synthase; Provisional
Probab=42.08 E-value=2.8e+02 Score=25.56 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEec--CCCHHHHHHHHHcCCCeeE
Q 022300 56 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT--NFDTERLRIILENGIPVVS 133 (299)
Q Consensus 56 ~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs--~~~~~~l~~~~~~~~~~~~ 133 (299)
++++.|.+.+.. ...+|+..+-+ ...+.++....++.+.+.+..+++.|. .+.+| ..+.+.+.++.+.|..-..
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i~i-~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~LkeAGld~~n 151 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRFCM-GAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLANAGLDYYN 151 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEEE-EecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHHcCCCEEe
Confidence 578888888875 56789888733 232222222226777777888887664 34344 3678889998887554221
Q ss_pred e-----eecccccc--cCh--hhHHHHHHHHhCCeEEEccccccc
Q 022300 134 N-----QVQHSVVD--MRP--QQKMAELCQLTGVKLITYGTVMGG 169 (299)
Q Consensus 134 ~-----q~~~n~~~--~~~--~~~~~~~~~~~gi~v~~~~pl~~G 169 (299)
+ --.|.-+. ... -.+.++.+++.|+.+.+-.-++-|
T Consensus 152 ~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Glg 196 (345)
T PRK15108 152 HNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLG 196 (345)
T ss_pred eccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCC
Confidence 1 11111111 111 135788888889877665455444
No 93
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=41.84 E-value=1.2e+02 Score=22.94 Aligned_cols=64 Identities=11% Similarity=0.036 Sum_probs=44.9
Q ss_pred CCCcEEEEecccCCCCCCCHHHHHHHHHHHHhhcC---CCcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 022300 39 HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMD---VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 105 (299)
Q Consensus 39 ~R~~i~I~tK~~~~~~~~~~~~i~~~ve~SL~~Lg---~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~ 105 (299)
.|=.+.|+-|+|.. .....+++.+.+..+... ....|++++-.+.....+..++.+.|..|.+.
T Consensus 38 ~R~GisVsKKvgkA---V~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 38 FRVGISVSKKVGNA---VVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred cEEEEEEecccCch---hhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 35578888888663 345666666666666543 24579999998877666678888888887766
No 94
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=41.83 E-value=1.5e+02 Score=26.86 Aligned_cols=51 Identities=10% Similarity=-0.087 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 022300 55 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 105 (299)
Q Consensus 55 ~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~ 105 (299)
..+++.+.+++.+-+.+-|.|.||+=+=+....+...++...++|..|+++
T Consensus 86 ~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~ 136 (294)
T cd06543 86 CTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKE 136 (294)
T ss_pred cccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHH
Confidence 457899999999999999999999977664322222246677777777776
No 95
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=41.59 E-value=1.1e+02 Score=26.10 Aligned_cols=88 Identities=13% Similarity=0.117 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCc---ccEEEecCC-CHHHHHHHHHcCCCee
Q 022300 57 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK---IKTVALTNF-DTERLRIILENGIPVV 132 (299)
Q Consensus 57 ~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gk---ir~iGvs~~-~~~~l~~~~~~~~~~~ 132 (299)
+.+....-++ .|.+-|+..+-+=+ . ....++.+++++++-. =-.||..+- +.++++.+++.|-.|.
T Consensus 23 ~~~~a~~~~~-al~~~Gi~~iEit~------~---~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fi 92 (213)
T PRK06552 23 SKEEALKISL-AVIKGGIKAIEVTY------T---NPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFI 92 (213)
T ss_pred CHHHHHHHHH-HHHHCCCCEEEEEC------C---CccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEE
Confidence 4555554444 45566665554433 1 2345667777766421 135888754 7899999999877666
Q ss_pred EeeecccccccChhhHHHHHHHHhCCeEEE
Q 022300 133 SNQVQHSVVDMRPQQKMAELCQLTGVKLIT 162 (299)
Q Consensus 133 ~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~ 162 (299)
+ + +....+++++|+++|+.++.
T Consensus 93 v-----s---P~~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 93 V-----S---PSFNRETAKICNLYQIPYLP 114 (213)
T ss_pred E-----C---CCCCHHHHHHHHHcCCCEEC
Confidence 4 2 33346899999999998876
No 96
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=41.37 E-value=1.3e+02 Score=23.54 Aligned_cols=62 Identities=15% Similarity=0.100 Sum_probs=44.3
Q ss_pred CCcEEEEecccCCCCCCCHHHHHHHHHHHHhhcCC----CcccEEEEecCCCCCCcHHHHHHHHHHHHH
Q 022300 40 QSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDV----PCLDMLQFHWWDYSNPGYLDALNHLTDLKE 104 (299)
Q Consensus 40 R~~i~I~tK~~~~~~~~~~~~i~~~ve~SL~~Lg~----d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~ 104 (299)
|=.+.|+-|+|.. .....+++.+.++++.+.. ...|++++..+.....++.++.+.|+.+.+
T Consensus 48 RvG~~VSKKvG~A---V~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 48 RVGFTVTKKNGNA---VERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred EEEEEEecccCcc---hHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 4467777787653 3457777777777776543 568999999987666667777777776665
No 97
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=41.37 E-value=78 Score=30.84 Aligned_cols=92 Identities=13% Similarity=0.100 Sum_probs=57.5
Q ss_pred HHHhhhcCCCcEEEEecccCCC----------------CCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHH
Q 022300 32 IEFVERGHQSSWISLTKWVPPP----------------VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDA 95 (299)
Q Consensus 32 E~~lg~~~R~~i~I~tK~~~~~----------------~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~ 95 (299)
.+.+|..++..+|+++=+|.=. ...+++.|. +|+.+.|+|.+- ++++++
T Consensus 148 rk~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~vEvd~~ri~-------kR~~~g~ld~~~--------~~ldea 212 (546)
T PF01175_consen 148 RKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGLIVEVDPSRIE-------KRLEQGYLDEVT--------DDLDEA 212 (546)
T ss_dssp HHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEEEEES-HHHHH-------HHHHTTSSSEEE--------SSHHHH
T ss_pred HHhcCCCCcceEEEEecccccccchHHHHHhcCceEEEEEECHHHHH-------HHHhCCCeeEEc--------CCHHHH
Confidence 3445545789999999987410 023445444 455568888763 238999
Q ss_pred HHHHHHHHHcCcccEEEecCCCHHHHHHHHHcCCCeeEe--eecc
Q 022300 96 LNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN--QVQH 138 (299)
Q Consensus 96 ~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~--q~~~ 138 (299)
++..++.+++|+..+||+-.--.+.+.++.+.++.|+++ |...
T Consensus 213 ~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~tDQTS~ 257 (546)
T PF01175_consen 213 LARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLVTDQTSA 257 (546)
T ss_dssp HHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE---SST
T ss_pred HHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcccCCCcc
Confidence 999999999999999999987788888888887655555 5443
No 98
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=41.21 E-value=3.3e+02 Score=26.13 Aligned_cols=111 Identities=10% Similarity=0.029 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCC---HHHHHHHHHcCCCe
Q 022300 55 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD---TERLRIILENGIPV 131 (299)
Q Consensus 55 ~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~---~~~l~~~~~~~~~~ 131 (299)
.++++.+.+.+++....++ .++.+-+-.+.......+.+++.|..++++..=..+.+++-. ++.+.++.+.+ +
T Consensus 59 ~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~g--v 134 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDLG--V 134 (442)
T ss_pred cCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCC--C
Confidence 4688999999988877652 345555655422222135688899999988211246666432 67777777654 3
Q ss_pred eEeeecccccccChh---------------------------hHHHHHHHHhCCeEEEccccccc
Q 022300 132 VSNQVQHSVVDMRPQ---------------------------QKMAELCQLTGVKLITYGTVMGG 169 (299)
Q Consensus 132 ~~~q~~~n~~~~~~~---------------------------~~~~~~~~~~gi~v~~~~pl~~G 169 (299)
+.+.+.++-++.... .+-++.+.+.|+.+....++-.|
T Consensus 135 d~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpG 199 (442)
T TIGR01290 135 GHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPG 199 (442)
T ss_pred CeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCC
Confidence 455555554432111 12245567778888777777666
No 99
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=40.59 E-value=1.6e+02 Score=22.69 Aligned_cols=64 Identities=14% Similarity=0.080 Sum_probs=44.9
Q ss_pred CCcEEEEecccCCCCCCCHHHHHHHHHHHHhhcCC---CcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 022300 40 QSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDV---PCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 105 (299)
Q Consensus 40 R~~i~I~tK~~~~~~~~~~~~i~~~ve~SL~~Lg~---d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~ 105 (299)
|=.+.|+-|++. .......+++.+.+..+.+.. ...|++++-.+.....+..++.+.|..|.+.
T Consensus 48 R~G~~VsKK~~~--~AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 48 RFGISISQKVSK--KAVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred EEEEEEeccccc--chhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 445677777653 123456677777776665532 4689999999887766688888888888776
No 100
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=39.77 E-value=3.5e+02 Score=26.02 Aligned_cols=90 Identities=10% Similarity=0.063 Sum_probs=48.5
Q ss_pred CcEEEEecccCCCCCCCHHHHHHHHHHHHhh-cCCCcccEEEEecCCCCCCcH---HHHHHHHHH-HHH----cCcccEE
Q 022300 41 SSWISLTKWVPPPVKMTSSIVRESIDVSRRR-MDVPCLDMLQFHWWDYSNPGY---LDALNHLTD-LKE----EGKIKTV 111 (299)
Q Consensus 41 ~~i~I~tK~~~~~~~~~~~~i~~~ve~SL~~-Lg~d~iDl~~lH~pd~~~~~~---~~~~~~L~~-l~~----~Gkir~i 111 (299)
+=|+|.|-+.+.--+.+.+.+.+.+++-++. ..--.+.++.+|.|+...... +.+++++.+ +.. +++|.=|
T Consensus 89 ~~I~V~tTC~~eiIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs~~~G~~~a~~ali~~~~~~~~~~~~VNii 168 (454)
T cd01973 89 RVIPIITTCSTEIIGDDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKGSMVTGYDEAVRSVVKTIAKKGAPSGKLNVF 168 (454)
T ss_pred CEEEEECCchHhhhccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEE
Confidence 4478888886544444555555555443321 110147899999998776523 333433332 222 4667777
Q ss_pred EecC--CCHHHHHHHHHc-CCC
Q 022300 112 ALTN--FDTERLRIILEN-GIP 130 (299)
Q Consensus 112 Gvs~--~~~~~l~~~~~~-~~~ 130 (299)
|-.+ .+.++++.+++. |+.
T Consensus 169 ~~~~~~~D~~ei~~lL~~~Gl~ 190 (454)
T cd01973 169 TGWVNPGDVVELKHYLSEMDVE 190 (454)
T ss_pred CCCCChHHHHHHHHHHHHcCCC
Confidence 6332 233556666665 544
No 101
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.34 E-value=1e+02 Score=26.62 Aligned_cols=88 Identities=10% Similarity=0.127 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHH----HcCcccEEEecCC-CHHHHHHHHHcCCCe
Q 022300 57 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLK----EEGKIKTVALTNF-DTERLRIILENGIPV 131 (299)
Q Consensus 57 ~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~----~~Gkir~iGvs~~-~~~~l~~~~~~~~~~ 131 (299)
+++...+-++ .|.+-|+..+-+=+ .++ ..++.+++|+ ++.-=-.||+.+- +.++++.+++.|-.|
T Consensus 25 ~~~~a~~~~~-al~~gGi~~iEiT~------~tp---~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~F 94 (222)
T PRK07114 25 DVEVAKKVIK-ACYDGGARVFEFTN------RGD---FAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANF 94 (222)
T ss_pred CHHHHHHHHH-HHHHCCCCEEEEeC------CCC---cHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCE
Confidence 4555555444 45566665554433 222 3344444443 3221135888754 789999999987666
Q ss_pred eEeeecccccccChhhHHHHHHHHhCCeEEE
Q 022300 132 VSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 162 (299)
Q Consensus 132 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~ 162 (299)
.+. +....+++++|+++|+.++.
T Consensus 95 iVs--------P~~~~~v~~~~~~~~i~~iP 117 (222)
T PRK07114 95 IVT--------PLFNPDIAKVCNRRKVPYSP 117 (222)
T ss_pred EEC--------CCCCHHHHHHHHHcCCCEeC
Confidence 532 33345899999999988776
No 102
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=38.73 E-value=1.8e+02 Score=26.52 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEec--CCCHHHHHHHHHcCCCeeEee
Q 022300 58 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT--NFDTERLRIILENGIPVVSNQ 135 (299)
Q Consensus 58 ~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs--~~~~~~l~~~~~~~~~~~~~q 135 (299)
.+++.+.++...++||.....+-+.-......+.-..+-+.|++|.++| ++.|=+. +|..+-++.+.+
T Consensus 206 ~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G-~~~V~v~p~gFv~D~lETl~e--------- 275 (316)
T PF00762_consen 206 PAQCEETARLIAERLGLPEWRLAFQSRFGPGEWLGPSTEDVLEELAKEG-VKRVVVVPPGFVSDCLETLYE--------- 275 (316)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEEEES-SSSS-BSSSBHHHHHHHHHHCT--SEEEEEETT-SSSSHHHHCC---------
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCccccHHHHHHHHHhcC-CCeEEEECCccccccHhHHHH---------
Confidence 4678888888888899877666665433333332235678889999999 5554333 233333333322
Q ss_pred ecccccccChhhHHHHHHHHhCCeEEEcccccc
Q 022300 136 VQHSVVDMRPQQKMAELCQLTGVKLITYGTVMG 168 (299)
Q Consensus 136 ~~~n~~~~~~~~~~~~~~~~~gi~v~~~~pl~~ 168 (299)
.+.+.-+.+.+.|+.-+.+.|--+
T Consensus 276 ---------idie~re~~~~~G~~~~~~ip~lN 299 (316)
T PF00762_consen 276 ---------IDIEYRELAEEAGGEEFVRIPCLN 299 (316)
T ss_dssp ---------CCCHHHHHHHHHTCCEEEE---ST
T ss_pred ---------HHHHHHHHHHHcCCceEEEeCCCC
Confidence 123567889999997777766644
No 103
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=38.66 E-value=2e+02 Score=25.91 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHHhCCCCceeeeccCCCCHHHHHHhH
Q 022300 215 QTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTN 261 (299)
Q Consensus 215 ~~l~~la~~~~~------s~aq~al~~~l~~~~v~~~i~g~~~~~~e~l~enl 261 (299)
..|.++|++.|. +..++-..|+-.... ..+..|+| +|+.|-+.+
T Consensus 224 ~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~-VGiTAGAS--TP~~li~eV 273 (280)
T TIGR00216 224 TRLYEIAEEHGPPSYLIETAEELPEEWLKGVKV-VGITAGAS--TPDWIIEEV 273 (280)
T ss_pred HHHHHHHHHhCCCEEEECChHHCCHHHhCCCCE-EEEEecCC--CCHHHHHHH
Confidence 778899999874 788999999987654 45788999 999876654
No 104
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=38.62 E-value=1.5e+02 Score=22.92 Aligned_cols=64 Identities=2% Similarity=-0.195 Sum_probs=45.3
Q ss_pred CCCcEEEEecccCCCCCCCHHHHHHHHHHHHhhcCC---CcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 022300 39 HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDV---PCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 105 (299)
Q Consensus 39 ~R~~i~I~tK~~~~~~~~~~~~i~~~ve~SL~~Lg~---d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~ 105 (299)
.|=.+.|+-|+|... ....+++-+.++.+.+.. .-.|++++-.+.....+..++.+.|+.+.+.
T Consensus 48 ~R~G~~VsKKvG~AV---~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 48 PRFGLVVSKAVGNAV---IRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred CEEEEEEeeeccchh---HHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 466788899987643 346666666666666544 3479999998876665577888888777665
No 105
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=38.60 E-value=3.3e+02 Score=25.34 Aligned_cols=76 Identities=18% Similarity=0.177 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHcCcccEEEec-------CCCHHHHHHHHHc--CCCeeEeeecccccccCh--------hhHHHHHHH
Q 022300 92 YLDALNHLTDLKEEGKIKTVALT-------NFDTERLRIILEN--GIPVVSNQVQHSVVDMRP--------QQKMAELCQ 154 (299)
Q Consensus 92 ~~~~~~~L~~l~~~Gkir~iGvs-------~~~~~~l~~~~~~--~~~~~~~q~~~n~~~~~~--------~~~~~~~~~ 154 (299)
+++.+++.+...+... +.|-+- |.+.+.+.++.+. +++..++-++||++.... ...+.+...
T Consensus 238 ~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np~~~~~y~r~~~~~i~~F~~~L~ 316 (349)
T COG0820 238 IEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNPVPGSDYERSSKERIRKFLKILK 316 (349)
T ss_pred HHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecCCCCCCCccCCcHHHHHHHHHHHH
Confidence 5778888877776655 555443 6678888888776 778899999999986432 234667777
Q ss_pred HhCCeEEEcccccc
Q 022300 155 LTGVKLITYGTVMG 168 (299)
Q Consensus 155 ~~gi~v~~~~pl~~ 168 (299)
++|+.+.....-+.
T Consensus 317 ~~gv~~tvR~~~g~ 330 (349)
T COG0820 317 KAGVLVTVRKTRGD 330 (349)
T ss_pred hCCeeEEecccccc
Confidence 78888888766655
No 106
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=38.40 E-value=1.6e+02 Score=27.22 Aligned_cols=83 Identities=12% Similarity=0.057 Sum_probs=56.6
Q ss_pred cEEEEecCCCCCCcHHHHHHHHHHHHHcCccc-EEEecCCCHHHHHHHHHcCCCeeEeeeccccccc-ChhhHHHHHHHH
Q 022300 78 DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQL 155 (299)
Q Consensus 78 Dl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~ 155 (299)
++.++-.|-.. +-++.+.+|++...+. ..|=|-++...++.++.. ..++++|+...-.-. ..-.++.+.|++
T Consensus 190 ~l~~iEeP~~~-----~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~-~a~di~~~d~~~~GGit~~~~ia~~A~~ 263 (361)
T cd03322 190 RLFWMEDPTPA-----ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQE-RLIDYIRTTVSHAGGITPARKIADLASL 263 (361)
T ss_pred CCCEEECCCCc-----ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHh-CCCCEEecCccccCCHHHHHHHHHHHHH
Confidence 45555544321 3356777888887665 677777888999888886 347788887764321 223478999999
Q ss_pred hCCeEEEcccc
Q 022300 156 TGVKLITYGTV 166 (299)
Q Consensus 156 ~gi~v~~~~pl 166 (299)
+|+.++.++..
T Consensus 264 ~gi~~~~h~~~ 274 (361)
T cd03322 264 YGVRTGWHGPT 274 (361)
T ss_pred cCCeeeccCCC
Confidence 99999876543
No 107
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=38.15 E-value=1.8e+02 Score=22.29 Aligned_cols=64 Identities=13% Similarity=0.088 Sum_probs=41.5
Q ss_pred CCcEEEEecccCCCCCCCHHHHHHHHHHHHhhcC--CCcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 022300 40 QSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 105 (299)
Q Consensus 40 R~~i~I~tK~~~~~~~~~~~~i~~~ve~SL~~Lg--~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~ 105 (299)
|=.+.|+-|++. .......+++.+.+..+... ..-.|++++..+.....+..++.+.|..|.+.
T Consensus 45 R~G~~VsKK~~~--~AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 45 RLGLVVGKKTAK--RAVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred eEEEEEecccCc--chhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 446777777543 12335566666666665432 23579999999876666677777777777655
No 108
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=38.08 E-value=3.3e+02 Score=25.12 Aligned_cols=104 Identities=13% Similarity=0.170 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcccEEEEecC-------C-CCCCcHHHHHHHHHHHHHcCcccEEEec---CCCHHHHH
Q 022300 54 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWW-------D-YSNPGYLDALNHLTDLKEEGKIKTVALT---NFDTERLR 122 (299)
Q Consensus 54 ~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p-------d-~~~~~~~~~~~~L~~l~~~Gkir~iGvs---~~~~~~l~ 122 (299)
+.++.+.+++-++. |.+.|+++|.+-+.-.. . ...+ ..+.++++.+.++ ..+...+. ..+.+.++
T Consensus 20 ~~f~~~~~~~i~~~-L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~-~~e~i~~~~~~~~--~~~~~~ll~pg~~~~~dl~ 95 (337)
T PRK08195 20 HQYTLEQVRAIARA-LDAAGVPVIEVTHGDGLGGSSFNYGFGAHT-DEEYIEAAAEVVK--QAKIAALLLPGIGTVDDLK 95 (337)
T ss_pred CccCHHHHHHHHHH-HHHcCCCEEEeecCCCCCCccccCCCCCCC-HHHHHHHHHHhCC--CCEEEEEeccCcccHHHHH
Confidence 45677777665554 99999999999642110 0 1112 2344444433332 34444332 22567787
Q ss_pred HHHHcCCCeeEeeecccccccChhhHHHHHHHHhCCeEEEc
Q 022300 123 IILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 163 (299)
Q Consensus 123 ~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~ 163 (299)
.+.+.++.. +.+..+.-+-....+.+++++++|+.+...
T Consensus 96 ~a~~~gvd~--iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 96 MAYDAGVRV--VRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHcCCCE--EEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 877766543 333333322223456899999999887764
No 109
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=37.94 E-value=4e+02 Score=26.13 Aligned_cols=83 Identities=16% Similarity=0.236 Sum_probs=42.6
Q ss_pred CcEEEEecccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHH---HHHHHHHH-HH-----------Hc
Q 022300 41 SSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYL---DALNHLTD-LK-----------EE 105 (299)
Q Consensus 41 ~~i~I~tK~~~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~---~~~~~L~~-l~-----------~~ 105 (299)
+-|+|.|-+.+ +-|-..++...+.++. .++++.++.+........ .+++.+.+ +. +.
T Consensus 87 ~~I~V~sTC~s-------eiIGdDi~~v~~~~~~-~~~Vi~v~t~gf~~~~~~G~~~al~~lv~~~~~~~~~~~~~~~~~ 158 (519)
T PRK02910 87 DLIVVGPSCTA-------ELLQEDLGGLAKHAGL-PIPVLPLELNAYRVKENWAADETFYQLVRALAKKAAELPQPKTAR 158 (519)
T ss_pred CEEEEeCCcHH-------HHhccCHHHHHHHhCC-CCCEEEEecCCcccccchHHHHHHHHHHHHHhhhcccccccCCCC
Confidence 45677777643 3333333333344443 367999999876654222 33333222 11 22
Q ss_pred CcccEEEecCC------CHHHHHHHHHc-CCCe
Q 022300 106 GKIKTVALTNF------DTERLRIILEN-GIPV 131 (299)
Q Consensus 106 Gkir~iGvs~~------~~~~l~~~~~~-~~~~ 131 (299)
++|.=||.++. +..+++.+++. |+.+
T Consensus 159 ~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~v 191 (519)
T PRK02910 159 PSVNLLGPTALGFHHRDDLTELRRLLATLGIDV 191 (519)
T ss_pred CeEEEEecCccCCCChhHHHHHHHHHHHcCCeE
Confidence 45777887542 23455666554 5443
No 110
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=37.50 E-value=1.7e+02 Score=26.00 Aligned_cols=56 Identities=14% Similarity=-0.002 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHHHhhc------CCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcc
Q 022300 53 PVKMTSSIVRESIDVSRRRM------DVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI 108 (299)
Q Consensus 53 ~~~~~~~~i~~~ve~SL~~L------g~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gki 108 (299)
..+.+.+...+-.+-+.+-+ +++.|=|=.+..+....++..+++++-+.|+++|-+
T Consensus 78 aGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~ 139 (267)
T CHL00162 78 AGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFT 139 (267)
T ss_pred cCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCE
Confidence 34677888877777777766 788888888888777778788999999999999853
No 111
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=37.41 E-value=5.1e+02 Score=27.13 Aligned_cols=95 Identities=8% Similarity=-0.034 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHc--CcccEEEecCCCHHHHHHHHHcCCCeeEe
Q 022300 57 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE--GKIKTVALTNFDTERLRIILENGIPVVSN 134 (299)
Q Consensus 57 ~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~--Gkir~iGvs~~~~~~l~~~~~~~~~~~~~ 134 (299)
..+.+++-++...........-+|+|+..+... .+.+.+|.+..++ ..+++|-++|.....+..+... +.
T Consensus 100 gVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT---~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSR-----Cq 171 (830)
T PRK07003 100 GVDEMAALLERAVYAPVDARFKVYMIDEVHMLT---NHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR-----CL 171 (830)
T ss_pred cHHHHHHHHHHHHhccccCCceEEEEeChhhCC---HHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhh-----eE
Confidence 456777777665444333456788888765443 3556777777766 5899999998654444344332 34
Q ss_pred eecccccccChhh-HHHHHHHHhCCe
Q 022300 135 QVQHSVVDMRPQQ-KMAELCQLTGVK 159 (299)
Q Consensus 135 q~~~n~~~~~~~~-~~~~~~~~~gi~ 159 (299)
++.|..+....-. -+...|.+.||.
T Consensus 172 ~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 172 QFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred EEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 5555554332211 233445545543
No 112
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=36.97 E-value=1.1e+02 Score=29.48 Aligned_cols=59 Identities=12% Similarity=0.130 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHH
Q 022300 57 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRII 124 (299)
Q Consensus 57 ~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~ 124 (299)
+.+...+.+.++|+.||++ .|-++ .+...++..-+++++|+++|++ |...| +.+++++.
T Consensus 49 s~~~~~~~I~e~L~wLGI~-~De~y-----~QSer~~~y~~~~e~L~e~G~A-Y~C~C--t~eel~~~ 107 (445)
T PRK12558 49 SKQEYADAIAEDLKWLGIN-WDRTF-----RQSDRFDRYDEAAEKLKAAGRL-YPCYE--TPEELELK 107 (445)
T ss_pred chHHHHHHHHHHHHHcCCC-CCccc-----cHHHHHHHHHHHHHHHHHCCCE-EEecC--chHHHHHH
Confidence 5688999999999999997 47431 2222245668889999999996 66665 45665443
No 113
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=36.14 E-value=1.7e+02 Score=26.85 Aligned_cols=68 Identities=22% Similarity=0.279 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCccc-EEEecCCCHHHHHHHHHcCCCeeEeeecccccc-cChhhHHHHHHHHhCCeEEEcc
Q 022300 96 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVD-MRPQQKMAELCQLTGVKLITYG 164 (299)
Q Consensus 96 ~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~-~~~~~~~~~~~~~~gi~v~~~~ 164 (299)
++.+..|++.-.+. ..|=+-++.+.+.++++. ..++++|+...-.- -..-..+...|+++|+.++..+
T Consensus 229 ~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~-~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 229 LEGLARLRQATSVPIAAGENLYTRWEFRDLLEA-GAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred HHHHHHHHHhCCCCEEeccccccHHHHHHHHHh-CCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccC
Confidence 45666777765554 444556678888888875 24677777665432 1223578999999999988765
No 114
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.14 E-value=3.7e+02 Score=24.94 Aligned_cols=77 Identities=13% Similarity=0.052 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHc-Cc---ccEEEec--CCCHHHHHHHHHc--CCCeeEeeecccccccC----hh----hHHHHHHHH
Q 022300 92 YLDALNHLTDLKEE-GK---IKTVALT--NFDTERLRIILEN--GIPVVSNQVQHSVVDMR----PQ----QKMAELCQL 155 (299)
Q Consensus 92 ~~~~~~~L~~l~~~-Gk---ir~iGvs--~~~~~~l~~~~~~--~~~~~~~q~~~n~~~~~----~~----~~~~~~~~~ 155 (299)
++++++++...... |+ ++++=+. |.+.+.+.++.+. +.+..++-++||++... +. ..+.+..++
T Consensus 240 l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~~~~~VnLIpyn~~~g~~y~~p~~e~v~~f~~~l~~ 319 (354)
T PRK14460 240 LDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSRTKCKLNLIVYNPAEGLPYSAPTEERILAFEKYLWS 319 (354)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 67888888765443 22 2233222 6677777777665 56678899999986431 11 235667778
Q ss_pred hCCeEEEcccccc
Q 022300 156 TGVKLITYGTVMG 168 (299)
Q Consensus 156 ~gi~v~~~~pl~~ 168 (299)
+|+.+......+.
T Consensus 320 ~Gi~vtir~~~G~ 332 (354)
T PRK14460 320 KGITAIIRKSKGQ 332 (354)
T ss_pred CCCeEEEeCCCCC
Confidence 8999988877665
No 115
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.92 E-value=3.7e+02 Score=24.88 Aligned_cols=86 Identities=20% Similarity=0.186 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHcC--c--ccEEEec--CCCHHHHHHHHHc--CCCeeEeeecccccccC----h----hhHHHHHHHH
Q 022300 92 YLDALNHLTDLKEEG--K--IKTVALT--NFDTERLRIILEN--GIPVVSNQVQHSVVDMR----P----QQKMAELCQL 155 (299)
Q Consensus 92 ~~~~~~~L~~l~~~G--k--ir~iGvs--~~~~~~l~~~~~~--~~~~~~~q~~~n~~~~~----~----~~~~~~~~~~ 155 (299)
++++++++.+..+.+ + ++++=+. |.+.+.+.++.+. +.+..++-++||++... + -..+.+..++
T Consensus 233 l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~~~~~~~~ps~e~i~~f~~~L~~ 312 (349)
T PRK14463 233 LAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEHEGCDFRSPTQEAIDRFHKYLLD 312 (349)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 567788877776654 2 2333333 6667888777776 56678888999986421 1 1245677888
Q ss_pred hCCeEEEcccccc------cccCCcccC
Q 022300 156 TGVKLITYGTVMG------GLLSEKFLD 177 (299)
Q Consensus 156 ~gi~v~~~~pl~~------G~L~~~~~~ 177 (299)
+|+.+......+. |.|..+...
T Consensus 313 ~gi~v~vR~~~G~di~aaCGqL~~~~~~ 340 (349)
T PRK14463 313 KHVTVITRSSRGSDISAACGQLKGKLDK 340 (349)
T ss_pred CCceEEEeCCCCcchhhccCcccccccC
Confidence 9999999988766 667654443
No 116
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=34.90 E-value=29 Score=25.00 Aligned_cols=67 Identities=10% Similarity=0.054 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHc-CcccEEEecCCCHHHHHHHHHc-CCCeeE
Q 022300 59 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE-GKIKTVALTNFDTERLRIILEN-GIPVVS 133 (299)
Q Consensus 59 ~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~-Gkir~iGvs~~~~~~l~~~~~~-~~~~~~ 133 (299)
+.+-...++-.+.||....||..+..-.+... .+.+++.|..+++. |+ +-+...+..++.. ++.+++
T Consensus 10 ~~LG~~W~~Lar~Lgls~~~I~~i~~~~p~~l-~eQv~~mL~~W~~r~G~-------~ATv~~L~~aL~~~~~~~~~ 78 (83)
T cd08319 10 QRLGPEWEQVLLDLGLSQTDIYRCKENHPHNV-QSQIVEALVKWRQRFGK-------KATVQSLIQSLKAVEVDPSV 78 (83)
T ss_pred HHHhhhHHHHHHHcCCCHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhcCC-------CCcHHHHHHHHHHcCCCHHH
Confidence 44556677888889999999999877333333 67899999999986 54 3467777777765 544443
No 117
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=34.36 E-value=77 Score=24.92 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=22.7
Q ss_pred HHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 022300 62 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 105 (299)
Q Consensus 62 ~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~ 105 (299)
|..+.+.|+.+....+|.++++..|.-.....++...++.|.+.
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~ 97 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPK 97 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhh
Confidence 34444444445555566666665554444344555555555544
No 118
>PRK07945 hypothetical protein; Provisional
Probab=34.24 E-value=3.7e+02 Score=24.67 Aligned_cols=82 Identities=13% Similarity=0.117 Sum_probs=50.1
Q ss_pred CCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecC---------------CCHHH-HHHHHHcCCCeeEeeec
Q 022300 74 VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---------------FDTER-LRIILENGIPVVSNQVQ 137 (299)
Q Consensus 74 ~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~---------------~~~~~-l~~~~~~~~~~~~~q~~ 137 (299)
.||+ +.-+|+.... + ..+..+.|.++.+.|++.-+|--. +..+. ++.+.+.+..+.+|--.
T Consensus 191 ~D~v-IgSvH~~~~~-~-~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g~~lEINt~~ 267 (335)
T PRK07945 191 LDVV-VASVHSKLRM-D-AAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHGTAVEINSRP 267 (335)
T ss_pred CCEE-EEEeecCCCC-C-HHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhCCEEEEeCCC
Confidence 4555 6677875322 2 456678888888889888888431 11122 33334446666666433
Q ss_pred ccccccChhhHHHHHHHHhCCeEE
Q 022300 138 HSVVDMRPQQKMAELCQLTGVKLI 161 (299)
Q Consensus 138 ~n~~~~~~~~~~~~~~~~~gi~v~ 161 (299)
+ ...+...+++.|++.|+.++
T Consensus 268 ~---r~~P~~~il~~a~e~G~~vt 288 (335)
T PRK07945 268 E---RRDPPTRLLRLALDAGCLFS 288 (335)
T ss_pred C---CCCChHHHHHHHHHcCCeEE
Confidence 3 23455679999999998753
No 119
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=34.10 E-value=1.8e+02 Score=25.49 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=18.4
Q ss_pred HHHHHHhCCCCceeeeccCCCCHHHHHHhHhhh
Q 022300 232 AVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF 264 (299)
Q Consensus 232 al~~~l~~~~v~~~i~g~~~~~~e~l~enl~a~ 264 (299)
.|+.+-+.+--..+-.|++ +.++|++.++.+
T Consensus 105 lL~~~A~tgkPvIlSTG~s--tl~EI~~Av~~~ 135 (241)
T PF03102_consen 105 LLEYIAKTGKPVILSTGMS--TLEEIERAVEVL 135 (241)
T ss_dssp HHHHHHTT-S-EEEE-TT----HHHHHHHHHHH
T ss_pred HHHHHHHhCCcEEEECCCC--CHHHHHHHHHHH
Confidence 4555555544444556888 999999999888
No 120
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=33.98 E-value=4.1e+02 Score=25.09 Aligned_cols=107 Identities=13% Similarity=0.078 Sum_probs=63.6
Q ss_pred HHHHHHHHHHH--------hhcCCCcccEEEEecCCCCCC----cHHHHHHHHHHHHHc-CcccEEEec---CCCHHHHH
Q 022300 59 SIVRESIDVSR--------RRMDVPCLDMLQFHWWDYSNP----GYLDALNHLTDLKEE-GKIKTVALT---NFDTERLR 122 (299)
Q Consensus 59 ~~i~~~ve~SL--------~~Lg~d~iDl~~lH~pd~~~~----~~~~~~~~L~~l~~~-Gkir~iGvs---~~~~~~l~ 122 (299)
+.++..++.-. ++...-..|++.||.-..+-. .-++..++.++..+. +.---|+=| ..+++.+.
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLe 207 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLE 207 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHH
Confidence 55666666644 222223578999997533211 133555566555343 222233323 55788999
Q ss_pred HHHHc--CCCeeEeeecccccccChhhHHHHHHHHhCCeEEEccccccc
Q 022300 123 IILEN--GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGG 169 (299)
Q Consensus 123 ~~~~~--~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G 169 (299)
++++. +-++-++-..... .-..+...|+++|..+++++|..-|
T Consensus 208 aaLe~~~G~kpLL~SAt~e~----Ny~~ia~lAk~yg~~Vvv~s~~Din 252 (389)
T TIGR00381 208 KAAEVAEGERCLLASANLDL----DYEKIANAAKKYGHVVLSWTIMDIN 252 (389)
T ss_pred HHHHHhCCCCcEEEecCchh----hHHHHHHHHHHhCCeEEEEcCCcHH
Confidence 88887 4345544333321 1246899999999999999888654
No 121
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=33.72 E-value=3.7e+02 Score=24.47 Aligned_cols=107 Identities=17% Similarity=0.169 Sum_probs=48.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHH----HHHH--
Q 022300 51 PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTER----LRII-- 124 (299)
Q Consensus 51 ~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~----l~~~-- 124 (299)
+++.-.+.+.+.+-++...+ ..++..+-+|.-........-.-+.++.|++.|+..+||+-...+.. ..++
T Consensus 145 GDPl~~~~~~L~~ll~~l~~---i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~h~~el~~~~~~ai~ 221 (321)
T TIGR03822 145 GDPLVLSPRRLGDIMARLAA---IDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHANHARELTAEARAACA 221 (321)
T ss_pred CCcccCCHHHHHHHHHHHHh---CCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCCChhhcCHHHHHHHH
Confidence 33333445555555555433 34566666664111010011111444566667855567766433322 2222
Q ss_pred --HHcCCCeeEeeecc-cccccCh--hhHHHHHHHHhCCeEE
Q 022300 125 --LENGIPVVSNQVQH-SVVDMRP--QQKMAELCQLTGVKLI 161 (299)
Q Consensus 125 --~~~~~~~~~~q~~~-n~~~~~~--~~~~~~~~~~~gi~v~ 161 (299)
.+.|+. ..+|..+ .-.+.+. -.++++++.+.|+.-.
T Consensus 222 ~L~~~Gi~-v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~py 262 (321)
T TIGR03822 222 RLIDAGIP-MVSQSVLLRGVNDDPETLAALMRAFVECRIKPY 262 (321)
T ss_pred HHHHcCCE-EEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeE
Confidence 222553 3344433 2122222 2457888888887633
No 122
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=33.71 E-value=64 Score=20.32 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=29.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhCCCCceeeeccCCCCHHHHHHhHhhhcC
Q 022300 217 LKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFML 266 (299)
Q Consensus 217 l~~la~~~~~s~aq~al~~~l~~~~v~~~i~g~~~~~~e~l~enl~a~~~ 266 (299)
|++||+..|+|++-+. .+|+.+. -++.. +.++|.+.++.+++
T Consensus 2 i~dIA~~agvS~~TVS--r~ln~~~----~vs~~--tr~rI~~~a~~lgY 43 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVS--RVLNGPP----RVSEE--TRERILEAAEELGY 43 (46)
T ss_dssp HHHHHHHHTSSHHHHH--HHHTTCS----SSTHH--HHHHHHHHHHHHTB
T ss_pred HHHHHHHHCcCHHHHH--HHHhCCC----CCCHH--HHHHHHHHHHHHCC
Confidence 6789999999987654 5555541 22455 77888888776654
No 123
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=33.58 E-value=3.4e+02 Score=25.23 Aligned_cols=99 Identities=11% Similarity=0.107 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCc-ccEEEecCCCHHHHHHHHHcCCCeeE
Q 022300 55 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 133 (299)
Q Consensus 55 ~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gk-ir~iGvs~~~~~~l~~~~~~~~~~~~ 133 (299)
.++.+...+-++ .|.++|+++|.+-+ |... ++-++.+..+.+.+. .+-.+++....+.++.+.+.+.+...
T Consensus 18 ~~s~~~k~~ia~-~L~~~Gv~~IEvG~---p~~~----~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~ 89 (363)
T TIGR02090 18 SLTVEQKVEIAR-KLDELGVDVIEAGF---PIAS----EGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSIH 89 (363)
T ss_pred CCCHHHHHHHHH-HHHHcCCCEEEEeC---CCCC----hHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEEE
Confidence 456666555544 59999999999753 3221 233566666666554 44455566678888888887655433
Q ss_pred eeecccccc------cCh------hhHHHHHHHHhCCeEE
Q 022300 134 NQVQHSVVD------MRP------QQKMAELCQLTGVKLI 161 (299)
Q Consensus 134 ~q~~~n~~~------~~~------~~~~~~~~~~~gi~v~ 161 (299)
+-+..|..+ ... -.+.+++|++.|+.+.
T Consensus 90 i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~ 129 (363)
T TIGR02090 90 TFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVE 129 (363)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 333333221 111 2357889999998764
No 124
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=33.17 E-value=46 Score=26.24 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=21.8
Q ss_pred cChhhHHHHHHHHhCCeEEEcccccc
Q 022300 143 MRPQQKMAELCQLTGVKLITYGTVMG 168 (299)
Q Consensus 143 ~~~~~~~~~~~~~~gi~v~~~~pl~~ 168 (299)
+....++++.|+++||.|++|-.+.-
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~~ 68 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFSW 68 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeeec
Confidence 45557899999999999999988763
No 125
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=33.14 E-value=3.8e+02 Score=24.41 Aligned_cols=109 Identities=7% Similarity=0.035 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecC---------CCHHHHHHHHHcC
Q 022300 58 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---------FDTERLRIILENG 128 (299)
Q Consensus 58 ~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~---------~~~~~l~~~~~~~ 128 (299)
.+.+.+.++......+ |.-+.+-.-|+.......+.+.++.+++-|.++.+.+.+ .+.+.++.+.+.+
T Consensus 121 ~~e~~~~i~~i~~~~~---I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g 197 (321)
T TIGR03822 121 PAELDAAFAYIADHPE---IWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSG 197 (321)
T ss_pred HHHHHHHHHHHHhCCC---ccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcC
Confidence 3444544443322222 333334333433322356777778888888777555543 3455556565555
Q ss_pred CCeeEeeecccccc--cChhhHHHHHHHHhCCeEEEcccccccc
Q 022300 129 IPVVSNQVQHSVVD--MRPQQKMAELCQLTGVKLITYGTVMGGL 170 (299)
Q Consensus 129 ~~~~~~q~~~n~~~--~~~~~~~~~~~~~~gi~v~~~~pl~~G~ 170 (299)
.. ..+.++.|-.. ...-.+.++.+++.|+.+...+++..|.
T Consensus 198 ~~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 198 KT-VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred Cc-EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 33 33444443111 1112356888889999999998998873
No 126
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=32.99 E-value=87 Score=28.05 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=57.7
Q ss_pred HhhcCCCcccEEEEecCCC-CCCcHHHHHHHHHHHHHcCcccEEE----ecCCCHHHHHHHHHc-CCCeeEeeecccccc
Q 022300 69 RRRMDVPCLDMLQFHWWDY-SNPGYLDALNHLTDLKEEGKIKTVA----LTNFDTERLRIILEN-GIPVVSNQVQHSVVD 142 (299)
Q Consensus 69 L~~Lg~d~iDl~~lH~pd~-~~~~~~~~~~~L~~l~~~Gkir~iG----vs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~ 142 (299)
+++...+..|+..+..|-. ..+ .+..++....+-.+- ++-|+..++.++.+. ++++.++-+.||+.+
T Consensus 156 ~kk~a~E~~~~~IIDsaaG~gCp-------Vi~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g~ 228 (284)
T COG1149 156 LKKHAKELADLLIIDSAAGTGCP-------VIASLKGADLAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLGD 228 (284)
T ss_pred HHHhhhhhcceeEEecCCCCCCh-------HHHhhccCCEEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCCc
Confidence 3333333489999988632 233 223344444433322 123445566666665 899999999997744
Q ss_pred cChhhHHHHHHHHhCCeEEEccccccc
Q 022300 143 MRPQQKMAELCQLTGVKLITYGTVMGG 169 (299)
Q Consensus 143 ~~~~~~~~~~~~~~gi~v~~~~pl~~G 169 (299)
. ++-++|++.|+.+++.-|+..-
T Consensus 229 s----~ie~~~~e~gi~il~~IPyd~~ 251 (284)
T COG1149 229 S----EIEEYCEEEGIPILGEIPYDKD 251 (284)
T ss_pred h----HHHHHHHHcCCCeeEECCcchh
Confidence 2 6789999999999998888654
No 127
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=32.91 E-value=2.5e+02 Score=25.28 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=35.0
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHHhCCCCceeeeccCCCCHHHHHHhH
Q 022300 215 QTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTN 261 (299)
Q Consensus 215 ~~l~~la~~~~~------s~aq~al~~~l~~~~v~~~i~g~~~~~~e~l~enl 261 (299)
..|.++|++.+. ++.++--.|+.....| .+..|+| +|+.+-+.+
T Consensus 225 ~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~V-GitaGAS--TP~~li~eV 274 (281)
T PRK12360 225 QKLVKICEKNCPNTFHIETADELDLEMLKDYKII-GITAGAS--TPDWIIEEV 274 (281)
T ss_pred HHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEE-EEEccCC--CCHHHHHHH
Confidence 678889998874 6788889999876544 4788999 999876655
No 128
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=32.87 E-value=2.6e+02 Score=22.43 Aligned_cols=65 Identities=6% Similarity=-0.004 Sum_probs=42.5
Q ss_pred CCcEEEEecccCCCCCCCHHHHHHHHHHHHhhc--CCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcC
Q 022300 40 QSSWISLTKWVPPPVKMTSSIVRESIDVSRRRM--DVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG 106 (299)
Q Consensus 40 R~~i~I~tK~~~~~~~~~~~~i~~~ve~SL~~L--g~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~G 106 (299)
|=.+.|+-|++. .......+++.+.++.+.+ .....|++++-.+.....+..++.+.|..|.+.-
T Consensus 49 RlG~sVSKKvg~--~AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k~ 115 (145)
T PRK04820 49 RLGLAVSRKVDT--RAVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRRA 115 (145)
T ss_pred EEEEEEeccccC--cchhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 556777777753 1233455555555555543 2234499999988766666888888888888773
No 129
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=32.59 E-value=4e+02 Score=24.50 Aligned_cols=105 Identities=11% Similarity=0.184 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcccEEEE--------e-cCCCCCCcHHHHHHHHHHHHHcCcccEEEec-CCCHHHHHH
Q 022300 54 VKMTSSIVRESIDVSRRRMDVPCLDMLQF--------H-WWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRI 123 (299)
Q Consensus 54 ~~~~~~~i~~~ve~SL~~Lg~d~iDl~~l--------H-~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs-~~~~~~l~~ 123 (299)
+.++.+.+.+-++ .|.+.|+++|.+-+. . .+. ..+ ..+.++++.+..+.-++..+-+. ..+.+.++.
T Consensus 19 ~~f~~~~~~~ia~-~Ld~aGV~~IEvg~g~gl~g~s~~~G~~-~~~-~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~ 95 (333)
T TIGR03217 19 HQFTIEQVRAIAA-ALDEAGVDAIEVTHGDGLGGSSFNYGFS-AHT-DLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKA 95 (333)
T ss_pred CcCCHHHHHHHHH-HHHHcCCCEEEEecCCCCCCccccCCCC-CCC-hHHHHHHHHHhCCCCEEEEEeccCccCHHHHHH
Confidence 3566777665554 599999999999622 1 111 112 12333333333333333222111 125677878
Q ss_pred HHHcCCCeeEeeecccccccChhhHHHHHHHHhCCeEEEc
Q 022300 124 ILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 163 (299)
Q Consensus 124 ~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~ 163 (299)
+.+.++. .+.+..+.-+-....+.++++++.|+.+...
T Consensus 96 a~~~gvd--~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~ 133 (333)
T TIGR03217 96 AYDAGAR--TVRVATHCTEADVSEQHIGMARELGMDTVGF 133 (333)
T ss_pred HHHCCCC--EEEEEeccchHHHHHHHHHHHHHcCCeEEEE
Confidence 7776544 3444444322223456899999999877653
No 130
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=32.42 E-value=1.9e+02 Score=23.23 Aligned_cols=57 Identities=16% Similarity=0.189 Sum_probs=39.1
Q ss_pred EEEecCCCH--HHHHHHHHcCCCeeEeeecccccccChhhHHHHHHHHhCCeEEEccccccccc
Q 022300 110 TVALTNFDT--ERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLL 171 (299)
Q Consensus 110 ~iGvs~~~~--~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G~L 171 (299)
.+|...|+. ..+..+.+. .-|+++-...+ +.+ .+++..|.++++.++..|.+.++.+
T Consensus 19 k~GlDgHd~gakvia~~l~d-~GfeVi~~g~~---~tp-~e~v~aA~~~dv~vIgvSsl~g~h~ 77 (143)
T COG2185 19 KLGLDGHDRGAKVIARALAD-AGFEVINLGLF---QTP-EEAVRAAVEEDVDVIGVSSLDGGHL 77 (143)
T ss_pred ccCccccccchHHHHHHHHh-CCceEEecCCc---CCH-HHHHHHHHhcCCCEEEEEeccchHH
Confidence 467777765 345555543 34665544443 444 5789999999999999999998854
No 131
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=32.32 E-value=48 Score=20.98 Aligned_cols=22 Identities=9% Similarity=-0.085 Sum_probs=14.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHH
Q 022300 215 QTLKRIASKHGVSIPVVAVRYI 236 (299)
Q Consensus 215 ~~l~~la~~~~~s~aq~al~~~ 236 (299)
+.+..+.++.|+|..++|-..-
T Consensus 5 ~~l~~~r~~~gltq~~lA~~~g 26 (58)
T TIGR03070 5 MLVRARRKALGLTQADLADLAG 26 (58)
T ss_pred HHHHHHHHHcCCCHHHHHHHhC
Confidence 4566666677777777775543
No 132
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=32.21 E-value=3.4e+02 Score=27.35 Aligned_cols=96 Identities=8% Similarity=-0.011 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEec-CCCHHHHHHHHHcCCCeeEee
Q 022300 57 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQ 135 (299)
Q Consensus 57 ~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs-~~~~~~l~~~~~~~~~~~~~q 135 (299)
+.+.++.+ ..+|.|++=+.+...-..... .+.+...+.+......++.+||- |-+++.+.++.+. ..++++|
T Consensus 12 ~~eda~~a-----~~~gaD~iGfIf~~~SpR~V~-~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~-~~ld~vQ 84 (610)
T PRK13803 12 DSALISKA-----VDMLPDFIGFIFYEKSPRFVG-NKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKK-NGIDFVQ 84 (610)
T ss_pred cHHHHHHH-----HHcCCCEEEEEecCCCCCCCC-HHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHh-cCCCEEE
Confidence 45555555 448999988875553222222 23313333333333457889986 7888999888775 6789999
Q ss_pred ecccccccChhhHHHHHHHHhCCeEE
Q 022300 136 VQHSVVDMRPQQKMAELCQLTGVKLI 161 (299)
Q Consensus 136 ~~~n~~~~~~~~~~~~~~~~~gi~v~ 161 (299)
++-+.- ....+.++..++.++.++
T Consensus 85 LHG~e~--~~~~~~~~~l~~~~~~ii 108 (610)
T PRK13803 85 LHGAES--KAEPAYCQRIYKKSIKKI 108 (610)
T ss_pred ECCCCC--cccHHHHHHhhhcCCcEE
Confidence 987541 111234444554555554
No 133
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=32.08 E-value=2.3e+02 Score=21.70 Aligned_cols=62 Identities=8% Similarity=-0.010 Sum_probs=44.6
Q ss_pred CCcEEEEecccCCCCCCCHHHHHHHHHHHHhhcCC----C--cccEEEEecCCCCCCcHHHHHHHHHHHH
Q 022300 40 QSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDV----P--CLDMLQFHWWDYSNPGYLDALNHLTDLK 103 (299)
Q Consensus 40 R~~i~I~tK~~~~~~~~~~~~i~~~ve~SL~~Lg~----d--~iDl~~lH~pd~~~~~~~~~~~~L~~l~ 103 (299)
|=.+.|+-|++. .......+++.+.++.+.... . -.|++++-.+.....+..++.+.|+.|.
T Consensus 47 RlG~sVSKKv~~--kAV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~~~~~~~l~~~l~~l~ 114 (118)
T PRK01492 47 FLGIKVSRKLNK--KAVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEEINFSHLNYELSKII 114 (118)
T ss_pred eEEEEEecccCC--chhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcccCCHHHHHHHHHHHH
Confidence 567888999654 123467788888888777654 2 5899999998776666777777776654
No 134
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.85 E-value=3e+02 Score=25.55 Aligned_cols=77 Identities=14% Similarity=0.088 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHcCc----ccEEEe--cCCCHHHHHHHHHc--CCCeeEeeecccccccC----h----hhHHHHHHHH
Q 022300 92 YLDALNHLTDLKEEGK----IKTVAL--TNFDTERLRIILEN--GIPVVSNQVQHSVVDMR----P----QQKMAELCQL 155 (299)
Q Consensus 92 ~~~~~~~L~~l~~~Gk----ir~iGv--s~~~~~~l~~~~~~--~~~~~~~q~~~n~~~~~----~----~~~~~~~~~~ 155 (299)
+++++++++.+.+.+. ++++=+ -|.+.+.+.++.+. +.+..++-++||++... + ...+.+.+++
T Consensus 245 l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~~~~ky~~ps~e~l~~f~~~L~~ 324 (356)
T PRK14455 245 LEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPVPERDYVRTPKEDIFAFEDTLKK 324 (356)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcCCCCCCcCCCHHHHHHHHHHHHH
Confidence 5889999998877542 233333 35666777777765 55678888999987531 1 1245667888
Q ss_pred hCCeEEEcccccc
Q 022300 156 TGVKLITYGTVMG 168 (299)
Q Consensus 156 ~gi~v~~~~pl~~ 168 (299)
+|+.+......+.
T Consensus 325 ~gi~v~ir~~~g~ 337 (356)
T PRK14455 325 NGVNCTIRREHGT 337 (356)
T ss_pred CCCcEEEeCCCCc
Confidence 9999988776655
No 135
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=31.76 E-value=81 Score=28.69 Aligned_cols=90 Identities=12% Similarity=-0.071 Sum_probs=44.9
Q ss_pred cChhhHHHHHHHHhCCeEEEcccccccccCCcccCCCCCCCCCCCCCCCchhH---HHHhhhhhcCCchHHHHHHHHHHH
Q 022300 143 MRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQ---KYKRMVDAWGGWSQFQVLLQTLKR 219 (299)
Q Consensus 143 ~~~~~~~~~~~~~~gi~v~~~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~ 219 (299)
..+...+++.|+++||.|.||-.+....-...-....+|.-+...+.+..... .-....-.++.++.-+-+...+.+
T Consensus 69 ~DpL~~~I~eaHkrGlevHAW~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~E 148 (311)
T PF02638_consen 69 FDPLEFMIEEAHKRGLEVHAWFRVGFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKE 148 (311)
T ss_pred ccHHHHHHHHHHHcCCEEEEEEEeecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHH
Confidence 34556799999999999999974332111100011111111110010000000 000111233445555667788999
Q ss_pred HHHHhCCCHHHHH
Q 022300 220 IASKHGVSIPVVA 232 (299)
Q Consensus 220 la~~~~~s~aq~a 232 (299)
|+++|.+.-.|+=
T Consensus 149 iv~~YdvDGIhlD 161 (311)
T PF02638_consen 149 IVKNYDVDGIHLD 161 (311)
T ss_pred HHhcCCCCeEEec
Confidence 9999987665544
No 136
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=31.67 E-value=75 Score=23.61 Aligned_cols=54 Identities=17% Similarity=0.273 Sum_probs=37.3
Q ss_pred cCCCHHHHHHHHHcCCCeeEeeecccccc-cChhhHHHHHHHHhCCeEEEccccccc
Q 022300 114 TNFDTERLRIILENGIPVVSNQVQHSVVD-MRPQQKMAELCQLTGVKLITYGTVMGG 169 (299)
Q Consensus 114 s~~~~~~l~~~~~~~~~~~~~q~~~n~~~-~~~~~~~~~~~~~~gi~v~~~~pl~~G 169 (299)
+.++...++++++. -.++++|+...-.- -..-..+.++|+++|+.++..+. .++
T Consensus 3 ~~~~~~~~~~li~~-~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEA-GAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHT-TSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHc-CCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 45678888888886 34677777765431 12235689999999999999886 444
No 137
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=31.23 E-value=2.8e+02 Score=22.33 Aligned_cols=96 Identities=14% Similarity=0.126 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcc-cEEEecCCCHHHHHHHHHc-CCCeeEe
Q 022300 57 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI-KTVALTNFDTERLRIILEN-GIPVVSN 134 (299)
Q Consensus 57 ~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gki-r~iGvs~~~~~~l~~~~~~-~~~~~~~ 134 (299)
.--.+++.+.+-|+..|-+.+|+=. +..+...+ +.+.-..+.+.+.+|.. +.|-++....-....+.+. |+....+
T Consensus 10 aG~~lK~~l~~~L~~~g~eV~D~G~-~~~~~~~d-Ypd~a~~va~~V~~g~~~~GIliCGtGiG~siaANK~~GIRAA~~ 87 (148)
T PRK05571 10 AGFELKEEIIEHLEELGHEVIDLGP-DSYDASVD-YPDYAKKVAEAVVAGEADRGILICGTGIGMSIAANKVKGIRAALC 87 (148)
T ss_pred chHHHHHHHHHHHHHCCCEEEEcCC-CCCCCCCC-HHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHHhcCCCeEEEEE
Confidence 3467889999999999998898652 33221334 78888889999999987 6788887777776666665 4444432
Q ss_pred eecccccccChhhHHHHHHHHh-CCeEEEcc
Q 022300 135 QVQHSVVDMRPQQKMAELCQLT-GVKLITYG 164 (299)
Q Consensus 135 q~~~n~~~~~~~~~~~~~~~~~-gi~v~~~~ 164 (299)
.-. .....++++ |..|++++
T Consensus 88 ~d~----------~~A~~ar~hNnaNVL~lG 108 (148)
T PRK05571 88 HDT----------YSAHLAREHNNANVLALG 108 (148)
T ss_pred CCH----------HHHHHHHHhcCCcEEEEC
Confidence 221 234556655 58888764
No 138
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=30.87 E-value=1.8e+02 Score=25.50 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=13.9
Q ss_pred hHHHHHHHHhCCeEEEc
Q 022300 147 QKMAELCQLTGVKLITY 163 (299)
Q Consensus 147 ~~~~~~~~~~gi~v~~~ 163 (299)
...++.|++.|..++..
T Consensus 97 ~~~i~~a~~lG~~~v~~ 113 (279)
T TIGR00542 97 EKAIQLARDLGIRTIQL 113 (279)
T ss_pred HHHHHHHHHhCCCEEEe
Confidence 46789999999988864
No 139
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=30.81 E-value=5.2e+02 Score=25.33 Aligned_cols=93 Identities=9% Similarity=-0.052 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHcCCCeeEeeecc
Q 022300 59 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQH 138 (299)
Q Consensus 59 ~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~ 138 (299)
+.+.+..++. ..-|.|.||+-.--. .+..+.+...++.+++...+ -|.+-+++++.++++++.|.++ +|-+
T Consensus 165 ~~i~~~A~~~-~~~GADIIDIG~~st----~p~~~~v~~~V~~l~~~~~~-pISIDT~~~~v~eaAL~aGAdi-INsV-- 235 (499)
T TIGR00284 165 DGIEGLAARM-ERDGADMVALGTGSF----DDDPDVVKEKVKTALDALDS-PVIADTPTLDELYEALKAGASG-VIMP-- 235 (499)
T ss_pred HHHHHHHHHH-HHCCCCEEEECCCcC----CCcHHHHHHHHHHHHhhCCC-cEEEeCCCHHHHHHHHHcCCCE-EEEC--
Confidence 4444444443 366889999874322 12244577777777776333 4889999999999999886443 2222
Q ss_pred cccccChhhHHHHHHHHhCCeEEEc
Q 022300 139 SVVDMRPQQKMAELCQLTGVKLITY 163 (299)
Q Consensus 139 n~~~~~~~~~~~~~~~~~gi~v~~~ 163 (299)
+.. . ..++++.+.+.|..++.+
T Consensus 236 s~~--~-~d~~~~l~a~~g~~vVlm 257 (499)
T TIGR00284 236 DVE--N-AVELASEKKLPEDAFVVV 257 (499)
T ss_pred Ccc--c-hhHHHHHHHHcCCeEEEE
Confidence 221 1 235788888889888886
No 140
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=30.69 E-value=2.3e+02 Score=21.17 Aligned_cols=63 Identities=10% Similarity=0.083 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHHhh---cCCCcccE------EEEe--cCCCCCCcHHHHHHHHHHHHHc---CcccEEEecCC
Q 022300 54 VKMTSSIVRESIDVSRRR---MDVPCLDM------LQFH--WWDYSNPGYLDALNHLTDLKEE---GKIKTVALTNF 116 (299)
Q Consensus 54 ~~~~~~~i~~~ve~SL~~---Lg~d~iDl------~~lH--~pd~~~~~~~~~~~~L~~l~~~---Gkir~iGvs~~ 116 (299)
..++.+.|.++|+..|++ .+++|-|- |+.- .|.....+..+++.++++++++ ..||-||+.+.
T Consensus 10 p~lt~~~i~~QI~yll~qG~~~~lE~ad~~~~~~~yW~mwklP~f~~~d~~~Vl~ei~~C~~~~p~~YVRliG~D~~ 86 (99)
T cd03527 10 PPLTDEQIAKQIDYIISNGWAPCLEFTEPEHYDNRYWTMWKLPMFGCTDPAQVLREIEACRKAYPDHYVRVVGFDNY 86 (99)
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEEEcccCCCCCCCEEeeccCCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCC
Confidence 357889999999988876 45555443 1111 2333344467999999999886 67888999875
No 141
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=30.51 E-value=2e+02 Score=26.61 Aligned_cols=74 Identities=11% Similarity=0.046 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCccc-EEEecCCCHHHHHHHHHcCCCeeEeeeccccccc-ChhhHHHHHHHHhCCeEEEccccccc
Q 022300 95 ALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 169 (299)
Q Consensus 95 ~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~~~~pl~~G 169 (299)
-++.+.+|++...+. +.|=+-++..++..++.. ..++++|+...-.-. ..-..+...|+.+|+.++..+.+.+|
T Consensus 226 d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~-~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~ 301 (368)
T TIGR02534 226 NREALARLTRRFNVPIMADESVTGPADALAIAKA-SAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGP 301 (368)
T ss_pred cHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHh-CCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhH
Confidence 356667777776555 667777888888888776 246777776654221 12346899999999999876555444
No 142
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=30.46 E-value=2.3e+02 Score=26.16 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCccc-EEEecCCCHHHHHHHHHcCCCeeEeeeccccccc-ChhhHHHHHHHHhCCeEEEccccccc
Q 022300 95 ALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 169 (299)
Q Consensus 95 ~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~~~~pl~~G 169 (299)
-++.+.+|++...+. +.|=+-++...+..+++.+ .++++|+.....-. ..-.++...|+++|+.++..+....|
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~-~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s~ 302 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARRG-AADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLESS 302 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhC-CCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchhH
Confidence 356667777765554 5566666778888887752 35666665544211 12346889999999999875444443
No 143
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=30.09 E-value=3.2e+02 Score=25.73 Aligned_cols=71 Identities=8% Similarity=0.064 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCccc-EEEecCCCHHHHHHHHHcCCCeeEeeecccccc-cChhhHHHHHHHHhCCeEEEcccc
Q 022300 95 ALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVD-MRPQQKMAELCQLTGVKLITYGTV 166 (299)
Q Consensus 95 ~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~-~~~~~~~~~~~~~~gi~v~~~~pl 166 (299)
-++.+.+|++.-.+. ..|=|-++...++.+++. -.++++|+...-.- -..-..+.+.|+.+|+.++.+...
T Consensus 245 d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~-~a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 245 NQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEE-QLIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred CHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHc-CCCCEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 356777888876555 667777889999999886 34777777665432 122347899999999999986543
No 144
>PF14502 HTH_41: Helix-turn-helix domain
Probab=29.98 E-value=49 Score=21.22 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhCCCH--HHHHHHHHHhCCCCce
Q 022300 214 LQTLKRIASKHGVSI--PVVAVRYILDQPAVAG 244 (299)
Q Consensus 214 ~~~l~~la~~~~~s~--aq~al~~~l~~~~v~~ 244 (299)
++.+.+++++++++. .|-||+++-..+.|..
T Consensus 6 i~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~L 38 (48)
T PF14502_consen 6 IPTISEYSEKFGVSRGTIQNALKFLEENGAIKL 38 (48)
T ss_pred cCCHHHHHHHhCcchhHHHHHHHHHHHCCcEEe
Confidence 477889999999874 8999999999987753
No 145
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=29.69 E-value=2.4e+02 Score=25.05 Aligned_cols=71 Identities=18% Similarity=0.199 Sum_probs=46.8
Q ss_pred cCCCcccEEEEecCCC-------CCCcHHHHHHHH----HHHHHcCcccEEEecCCCHHHHHHHHHcCCCeeEeeecccc
Q 022300 72 MDVPCLDMLQFHWWDY-------SNPGYLDALNHL----TDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSV 140 (299)
Q Consensus 72 Lg~d~iDl~~lH~pd~-------~~~~~~~~~~~L----~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~ 140 (299)
+.++.+|.+++---|. ....-+++.+++ +.+++.|| .+|+...+++..+..++.|..+.++.....+
T Consensus 165 ~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk--~~G~~~~~~~~a~~~~~~G~~~v~~g~D~~~ 242 (267)
T PRK10128 165 LDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGK--AAGFLAVDPDMAQKCLAWGANFVAVGVDTML 242 (267)
T ss_pred hCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCC--eEEEcCCCHHHHHHHHHcCCcEEEEChHHHH
Confidence 3568999999864320 111123344444 44677788 5687777889999998888888888877777
Q ss_pred cccC
Q 022300 141 VDMR 144 (299)
Q Consensus 141 ~~~~ 144 (299)
+...
T Consensus 243 l~~~ 246 (267)
T PRK10128 243 YTDA 246 (267)
T ss_pred HHHH
Confidence 6433
No 146
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=29.61 E-value=4.6e+02 Score=24.32 Aligned_cols=99 Identities=9% Similarity=0.044 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcC-cccEEEecCCCHHHHHHHHHcCCCeeE
Q 022300 55 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIPVVS 133 (299)
Q Consensus 55 ~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~G-kir~iGvs~~~~~~l~~~~~~~~~~~~ 133 (299)
.++.+...+-++ .|.++|+++|.+- .|... +.-++.+..+.+.+ ..+..+++.-..+.++.+.+.+.+...
T Consensus 19 ~~s~~~k~~ia~-~L~~~Gv~~IEvG---~p~~~----~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~ 90 (365)
T TIGR02660 19 AFTAAEKLAIAR-ALDEAGVDELEVG---IPAMG----EEERAVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAVH 90 (365)
T ss_pred CCCHHHHHHHHH-HHHHcCCCEEEEe---CCCCC----HHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEEE
Confidence 456666655554 5999999999985 33221 23356666666664 366677777778888888877554333
Q ss_pred eeecccccc------cCh------hhHHHHHHHHhCCeEE
Q 022300 134 NQVQHSVVD------MRP------QQKMAELCQLTGVKLI 161 (299)
Q Consensus 134 ~q~~~n~~~------~~~------~~~~~~~~~~~gi~v~ 161 (299)
+-+..|..+ ... -.+.+++++++|+.+.
T Consensus 91 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 91 ISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred EEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 333333211 111 1257889999997755
No 147
>TIGR00188 rnpA ribonuclease P protein component, eubacterial. The yeast mitochondrial RNase P protein component gene RPM2 has no obvious sequence similarity to rnpA, but resembles eukaryotic nuclear RNase P instead.
Probab=29.57 E-value=2e+02 Score=21.43 Aligned_cols=61 Identities=16% Similarity=0.094 Sum_probs=40.6
Q ss_pred CCcEEEEecccCCCCCCCHHHHHHHHHHHHhhcC--CCcccEEEEecCCCCCCcHHHHHHHHHHHH
Q 022300 40 QSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLK 103 (299)
Q Consensus 40 R~~i~I~tK~~~~~~~~~~~~i~~~ve~SL~~Lg--~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~ 103 (299)
|=.+.|+-|+|... ....+++.+.+..+... ....|++++-.+.....+..++.+.|..|.
T Consensus 42 RlGi~vsKK~g~AV---~RNriKR~lRe~~R~~~~~l~~~d~v~i~r~~~~~~~~~~l~~~l~~l~ 104 (105)
T TIGR00188 42 RVGLSVSKKVKNAV---ERNRIKRLIREVFRERQELLKALDVVVIVRKGFSELTYEAFLKLLLQLF 104 (105)
T ss_pred EEEEEEecccCchh---HHHHHHHHHHHHHHHhhcccCCccEEEEECCCcCcCCHHHHHHHHHHHh
Confidence 44677888876533 34555555555555432 236899999998776666888888887764
No 148
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]
Probab=29.35 E-value=1.2e+02 Score=26.15 Aligned_cols=42 Identities=14% Similarity=0.096 Sum_probs=35.3
Q ss_pred HhCCCHHHHHHHHHHhCCCCceeeeccCCCCHHHHHHhHhhh
Q 022300 223 KHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF 264 (299)
Q Consensus 223 ~~~~s~aq~al~~~l~~~~v~~~i~g~~~~~~e~l~enl~a~ 264 (299)
+...|-.++|+.|++.++.-..++.|..-.+.+|.-.|+.-+
T Consensus 74 eKd~TD~elAl~~a~e~g~d~i~i~Ga~GGR~DH~l~nl~ll 115 (212)
T COG1564 74 EKDSTDLELALDEALERGADEIVILGALGGRLDHALANLFLL 115 (212)
T ss_pred hhccchHHHHHHHHHHcCCCEEEEEecCCChHHHHHHHHHHH
Confidence 445788999999999999977788888777899998888655
No 149
>PRK14017 galactonate dehydratase; Provisional
Probab=29.17 E-value=3e+02 Score=25.69 Aligned_cols=69 Identities=19% Similarity=0.152 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCccc-EEEecCCCHHHHHHHHHcCCCeeEeeeccccccc-ChhhHHHHHHHHhCCeEEEccc
Q 022300 96 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGT 165 (299)
Q Consensus 96 ~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~~~~p 165 (299)
++.+.+|++...+. ..|=|-++...+..+++.+ .++++|+..+-+-. ..-..+.+.|+++|+.++.++.
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~-a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAG-GVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcC-CCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCC
Confidence 56777787776555 5666778888888888863 46777777664321 2235789999999999998754
No 150
>PLN02444 HMP-P synthase
Probab=29.04 E-value=5.9e+02 Score=25.41 Aligned_cols=92 Identities=10% Similarity=0.049 Sum_probs=59.9
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHcCCCeeE
Q 022300 54 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS 133 (299)
Q Consensus 54 ~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~ 133 (299)
.+++.+.+++.+++..+. -+|.+-+|.- -.++.++.++ + |-.|+.+-...-+...+..
T Consensus 295 ~~lt~d~~~d~ieeQaeq----GVDfmTIH~G--------v~~~~v~~~~--~--R~tgIVSRGGSi~a~Wml~------ 352 (642)
T PLN02444 295 ENLTWEVFRETLIEQAEQ----GVDYFTIHAG--------VLLRYIPLTA--K--RMTGIVSRGGSIHAKWCLA------ 352 (642)
T ss_pred hhCCHHHHHHHHHHHHHh----CCCEEEEChh--------hHHHHHHHHh--C--cccCceeCCcHHHHHHHHH------
Confidence 467889999998888764 5788999972 2334444454 3 7788888777776666554
Q ss_pred eeecccccccChhhHHHHHHHHhCCeEEEccccccc
Q 022300 134 NQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGG 169 (299)
Q Consensus 134 ~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G 169 (299)
.-.=|++.-.+ .++++.|+++++.+.---.|-.|
T Consensus 353 -~~kENPlYe~F-D~ileI~k~YDVtlSLGDGLRPG 386 (642)
T PLN02444 353 -YHKENFAYEHW-DDILDICNQYDIALSIGDGLRPG 386 (642)
T ss_pred -cCCcCchHHHH-HHHHHHHHHhCeeeeccCCcCCC
Confidence 11123332333 47999999999987544444334
No 151
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=29.00 E-value=3.8e+02 Score=23.13 Aligned_cols=61 Identities=7% Similarity=0.210 Sum_probs=39.8
Q ss_pred HHHHHHHHHhCC---------CHHHHHHHHHHhCCCCceeeeccCCCCHHHHHHhHhhhcCCCCHHHHHHHHHHHhcC
Q 022300 215 QTLKRIASKHGV---------SIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKG 283 (299)
Q Consensus 215 ~~l~~la~~~~~---------s~aq~al~~~l~~~~v~~~i~g~~~~~~e~l~enl~a~~~~Lt~e~~~~i~~~~~~~ 283 (299)
..+..+|++.|+ ++.++ +.++ . .+..++|++++ .. .|.+. -+...|+++.++.|.++.++.
T Consensus 101 ~~~e~vc~~~gl~~~~PLW~~d~~~l-~e~i-~-~Gf~aiIv~v~--~~-gL~~~--~LGr~id~~~~~~L~~l~~~~ 170 (222)
T TIGR00289 101 SRIDKVCRELGLKSIAPLWHADPEKL-MYEV-A-EKFEVIIVSVS--AM-GLDES--WLGRRIDKECIDDLKRLNEKY 170 (222)
T ss_pred HHHHHHHHHcCCEEeccccCCCHHHH-HHHH-H-cCCeEEEEEEc--cC-CCChH--HcCCccCHHHHHHHHHHHhhc
Confidence 677888888875 34454 4654 4 44555677666 33 34433 367789999999888875554
No 152
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=28.89 E-value=1.4e+02 Score=27.43 Aligned_cols=102 Identities=13% Similarity=0.083 Sum_probs=51.5
Q ss_pred CcEEEEecccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHH
Q 022300 41 SSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTER 120 (299)
Q Consensus 41 ~~i~I~tK~~~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~ 120 (299)
+.++|+.-.|.. |+.+-+...+.|+..-+ -|.|-+=+=..+-+|...+. .-....+|. + .|....
T Consensus 13 ~~~~iIAEig~N-HnG~le~A~~lIdaAk~-aGADavKfQt~~~~d~~t~~---------~~~~~~~i~--~--~~~~~s 77 (347)
T COG2089 13 KKPFIIAEIGAN-HNGDLERAKELIDAAKE-AGADAVKFQTFYTPDIMTLE---------SKNVPFKIK--T--LWDKVS 77 (347)
T ss_pred CCcEEEeeeccc-ccCcHHHHHHHHHHHHH-cCcceeeeeccccccccccc---------ccCCccccc--c--cccccc
Confidence 466666666543 45567777777776554 66665543332333322220 001112222 1 112222
Q ss_pred HHHHHHcCCCeeEeeecccccccChhhHHHHHHHHhCCeEEEccccccc
Q 022300 121 LRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGG 169 (299)
Q Consensus 121 l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G 169 (299)
+.++.+. ...| .++..++.++|++.||.+++ +||...
T Consensus 78 lyel~e~--------~~~p---~e~~~~Lke~a~~~Gi~~~S-SPfd~~ 114 (347)
T COG2089 78 LYELYEE--------AETP---LEWHAQLKEYARKRGIIFFS-SPFDLT 114 (347)
T ss_pred HHHHHHH--------hcCC---HHHHHHHHHHHHHcCeEEEe-cCCCHH
Confidence 2222221 0111 23346799999999999988 688654
No 153
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=28.83 E-value=2.7e+02 Score=23.58 Aligned_cols=73 Identities=15% Similarity=0.291 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCH----HHHHHHHHcCCCeeE
Q 022300 58 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT----ERLRIILENGIPVVS 133 (299)
Q Consensus 58 ~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~----~~l~~~~~~~~~~~~ 133 (299)
...+.+.+++.++.+|.+ +.++ .+...+ .+...+.++.+.++| +..|=++..+. ..++++.+.++++..
T Consensus 13 ~~~~~~g~~~~a~~~g~~-~~~~----~~~~~d-~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYE-VEIV----FDAQND-PEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp HHHHHHHHHHHHHHHTCE-EEEE----EESTTT-HHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHcCCE-EEEe----CCCCCC-HHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhcCceEEE
Confidence 467889999999999873 3333 222334 578889999999887 88888875554 556666666787666
Q ss_pred eeec
Q 022300 134 NQVQ 137 (299)
Q Consensus 134 ~q~~ 137 (299)
+-..
T Consensus 86 ~d~~ 89 (257)
T PF13407_consen 86 VDSD 89 (257)
T ss_dssp ESST
T ss_pred Eecc
Confidence 5444
No 154
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.79 E-value=4.8e+02 Score=24.23 Aligned_cols=90 Identities=9% Similarity=0.047 Sum_probs=60.0
Q ss_pred EEEEecCCCC----------CCcHHHHHHHHHHHHHcC-cccE---EEec--CCCHHHHHHHHHc--CCCeeEeeecccc
Q 022300 79 MLQFHWWDYS----------NPGYLDALNHLTDLKEEG-KIKT---VALT--NFDTERLRIILEN--GIPVVSNQVQHSV 140 (299)
Q Consensus 79 l~~lH~pd~~----------~~~~~~~~~~L~~l~~~G-kir~---iGvs--~~~~~~l~~~~~~--~~~~~~~q~~~n~ 140 (299)
.+-||.|+.. ...++++++++.+..+.. .--. +=+. |.+.+.+.++.+. +.+..++-++||+
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np 289 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHA 289 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCC
Confidence 4678876421 123788999998865542 2111 1122 7788888888776 6778999999997
Q ss_pred ccc-----Chh---hHHHHHHHHhCCeEEEcccccc
Q 022300 141 VDM-----RPQ---QKMAELCQLTGVKLITYGTVMG 168 (299)
Q Consensus 141 ~~~-----~~~---~~~~~~~~~~gi~v~~~~pl~~ 168 (299)
... ... ..+.+..+++|+.+......+.
T Consensus 290 ~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~ 325 (345)
T PRK14466 290 IPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGE 325 (345)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 432 111 2466778889999999877765
No 155
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=28.47 E-value=3.7e+02 Score=24.97 Aligned_cols=89 Identities=13% Similarity=0.159 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHc----C--
Q 022300 55 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN----G-- 128 (299)
Q Consensus 55 ~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~----~-- 128 (299)
.++++.+++-+++.|.+.|++ ++.-++..+..-.+ -.-|+.+|...++...++. +
T Consensus 5 ~~~~e~L~~~~~~vl~~~G~~-----------------ee~A~~vA~~lv~a--d~~G~~SHGv~r~p~yi~~l~~G~i~ 65 (349)
T COG2055 5 KVSAEELKALIEEVLRKAGVP-----------------EEDARAVADVLVAA--DLRGVDSHGVGRLPGYVRRLKAGKIN 65 (349)
T ss_pred EecHHHHHHHHHHHHHHcCCC-----------------HHHHHHHHHHHHHH--HhcCCcccchHHHHHHHHHHHcCCcC
Confidence 457899999999999999982 22222222222221 2367888888887766664 1
Q ss_pred --CCeeEeeeccccc--ccC----------hhhHHHHHHHHhCCeEEE
Q 022300 129 --IPVVSNQVQHSVV--DMR----------PQQKMAELCQLTGVKLIT 162 (299)
Q Consensus 129 --~~~~~~q~~~n~~--~~~----------~~~~~~~~~~~~gi~v~~ 162 (299)
-.+.+++..=... |-. .-...++.|+++||++++
T Consensus 66 ~~a~~~i~~~~~a~~~iDa~~g~G~~a~~~am~~aie~Ak~~Gia~va 113 (349)
T COG2055 66 PDAEPEIVREAPAVAVLDADGGFGQVAAKKAMELAIEKAKQHGIAAVA 113 (349)
T ss_pred CCCceEEEeecCcEEEEeCCCCcchHHHHHHHHHHHHHHHHhCeeEEE
Confidence 1233332222211 110 024578999999998876
No 156
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=27.99 E-value=3.7e+02 Score=24.33 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=35.7
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHHhCCCCceeeeccCCCCHHHHHHhH
Q 022300 215 QTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTN 261 (299)
Q Consensus 215 ~~l~~la~~~~~------s~aq~al~~~l~~~~v~~~i~g~~~~~~e~l~enl 261 (299)
.+|.++|++.|. ++.++-..|+.....| .+-.|+| +|+.|-+++
T Consensus 228 ~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~V-GvTAGAS--tPd~lV~~V 277 (294)
T COG0761 228 NRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTV-GVTAGAS--TPDWLVQEV 277 (294)
T ss_pred HHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEE-EEecCCC--CCHHHHHHH
Confidence 789999999986 6788889999885543 4677999 999988776
No 157
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=27.79 E-value=84 Score=28.39 Aligned_cols=49 Identities=14% Similarity=-0.060 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhhcCCCcc--cEEEEecCCCCCCcHHHHHHHHHHHHHcCcccE
Q 022300 58 SSIVRESIDVSRRRMDVPCL--DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKT 110 (299)
Q Consensus 58 ~~~i~~~ve~SL~~Lg~d~i--Dl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~ 110 (299)
.+...+.+.+.+++||+.+- .-+.-+.+ ...+.+.+.+.+|.++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~----~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISYDWSDEYITTEP----EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCccccCCCCeECCCH----HHHHHHHHHHHHHHHCCCEEe
Confidence 46777888899999998433 33333332 225789999999999999865
No 158
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=27.66 E-value=5.8e+02 Score=24.80 Aligned_cols=70 Identities=11% Similarity=0.130 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHcCcccEEEec----CCCHHHHHHHHHc----C-CCeeE-eeecccccccChhhHHHHHHHHhCCeEE
Q 022300 92 YLDALNHLTDLKEEGKIKTVALT----NFDTERLRIILEN----G-IPVVS-NQVQHSVVDMRPQQKMAELCQLTGVKLI 161 (299)
Q Consensus 92 ~~~~~~~L~~l~~~Gkir~iGvs----~~~~~~l~~~~~~----~-~~~~~-~q~~~n~~~~~~~~~~~~~~~~~gi~v~ 161 (299)
.+.+++.++.++++..++.+-+. +.+...+.++.+. + ..+.. .+...+.+.. +.++++.+++.|+..+
T Consensus 224 ~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~--d~ell~~l~~aG~~~v 301 (497)
T TIGR02026 224 PKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVR--DADILHLYRRAGLVHI 301 (497)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccC--CHHHHHHHHHhCCcEE
Confidence 57899999999887668887766 2344444444332 3 22211 2333333222 3468999999998766
Q ss_pred Ec
Q 022300 162 TY 163 (299)
Q Consensus 162 ~~ 163 (299)
..
T Consensus 302 ~i 303 (497)
T TIGR02026 302 SL 303 (497)
T ss_pred EE
Confidence 65
No 159
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=27.63 E-value=1.5e+02 Score=27.04 Aligned_cols=62 Identities=13% Similarity=0.033 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHhhcCCCcc-cEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHc
Q 022300 57 TSSIVRESIDVSRRRMDVPCL-DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN 127 (299)
Q Consensus 57 ~~~~i~~~ve~SL~~Lg~d~i-Dl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~ 127 (299)
......+++.+.|+.||.++= ..|+ +....+.-.+++++|+++|++ |...| +.+++++....
T Consensus 48 ~~~~~~~~i~~~L~wlGl~~D~~~~~------QS~r~~~Y~~~~~~L~~~g~a-Y~C~C--sr~~l~~~r~~ 110 (314)
T PF00749_consen 48 CRPEFYDAILEDLRWLGLEWDYGPYY------QSDRLEIYQEAAEKLIDKGKA-YPCFC--SREELKAAREA 110 (314)
T ss_dssp CHHHHHHHHHHHHHHHT---STCEEE------GGGGHHHHHHHHHHHHHTTSE-EEEES--EHHHHHHHHHH
T ss_pred chhhHHHHHHhheeEEEEecCCeEEe------HHHHHHHHHHHHHHHhhcCCC-ccccC--CHHHHHHHHHH
Confidence 467888999999999999764 2222 223366778899999999996 56565 57777766543
No 160
>PLN02775 Probable dihydrodipicolinate reductase
Probab=27.55 E-value=4.1e+02 Score=23.99 Aligned_cols=73 Identities=11% Similarity=0.011 Sum_probs=53.5
Q ss_pred HHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHcCCCeeEeeecccc
Q 022300 63 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSV 140 (299)
Q Consensus 63 ~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~ 140 (299)
..+++.|..+..+|.|++++.. ..+ +.+++.++.+.+.|+--=+|.+.|+.+++.++.+...-+.+.-.+|++
T Consensus 66 ~dl~~~l~~~~~~~~~~VvIDF---T~P--~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSi 138 (286)
T PLN02775 66 SEREAVLSSVKAEYPNLIVVDY---TLP--DAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGK 138 (286)
T ss_pred ccHHHHHHHhhccCCCEEEEEC---CCh--HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcCCccEEEECcccH
Confidence 5566666666666899777764 333 578889999999999999999999999988876652234555555554
No 161
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=27.53 E-value=66 Score=26.41 Aligned_cols=66 Identities=24% Similarity=0.241 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHcC-cccEEEecCCC--HHHHHHHHHcCCCeeEeeecccccccChhhHHHHHHHHhCCeEEEc
Q 022300 92 YLDALNHLTDLKEEG-KIKTVALTNFD--TERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 163 (299)
Q Consensus 92 ~~~~~~~L~~l~~~G-kir~iGvs~~~--~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~ 163 (299)
..+++.+|.++++.| +|..+|..+.. ...+..++ + ..+.+..|+- ...-...+..+++.|+.++.-
T Consensus 63 ~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll--~--~~i~~~~~~~--~~e~~~~i~~~~~~G~~viVG 131 (176)
T PF06506_consen 63 GFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELL--G--VDIKIYPYDS--EEEIEAAIKQAKAEGVDVIVG 131 (176)
T ss_dssp HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHH--T---EEEEEEESS--HHHHHHHHHHHHHTT--EEEE
T ss_pred HhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHh--C--CceEEEEECC--HHHHHHHHHHHHHcCCcEEEC
Confidence 468999999999876 66666766654 34555554 2 3555555543 222346788899999988873
No 162
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=27.52 E-value=2.7e+02 Score=26.57 Aligned_cols=67 Identities=15% Similarity=0.259 Sum_probs=45.2
Q ss_pred HHHHHHHcCcccEEEecCCCHHHHHHHHHc-------CCCeeEeeecccccccChhhHHHHHHHHhCCeEEEccc
Q 022300 98 HLTDLKEEGKIKTVALTNFDTERLRIILEN-------GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 165 (299)
Q Consensus 98 ~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-------~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~p 165 (299)
-...+-+.|-...+|..+.+++++++.+.. +-+|-+|-+ .++-+...+..+++.+.++|+.++.-+.
T Consensus 30 LVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 30 LVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred HHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchhHHHHHHHHHHcCCCEEEecc
Confidence 334556779999999999999988776654 124555443 3332222245689999999998776543
No 163
>PRK08609 hypothetical protein; Provisional
Probab=27.22 E-value=4.7e+02 Score=26.05 Aligned_cols=81 Identities=16% Similarity=0.122 Sum_probs=44.0
Q ss_pred CcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecC------CC-----HHHHHHH-HHcCCCeeEeeecccccc
Q 022300 75 PCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN------FD-----TERLRII-LENGIPVVSNQVQHSVVD 142 (299)
Q Consensus 75 d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~------~~-----~~~l~~~-~~~~~~~~~~q~~~n~~~ 142 (299)
||+ +.-+|++. ..+ .+++++.+.++.+.|.+.-||--. .. .+.+.++ .+.+..+.+|-. .+.
T Consensus 430 D~v-I~SvH~~~-~~~-~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G~~lEINa~---~~r 503 (570)
T PRK08609 430 DYV-IAAIHSSF-SQS-EEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETNTALELNAN---PNR 503 (570)
T ss_pred CEE-EEEeecCC-CCC-HHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhCCEEEEcCC---ccc
Confidence 444 45556542 222 456778888888888877776543 11 1222233 333544444433 222
Q ss_pred cChhhHHHHHHHHhCCeEE
Q 022300 143 MRPQQKMAELCQLTGVKLI 161 (299)
Q Consensus 143 ~~~~~~~~~~~~~~gi~v~ 161 (299)
..+...++..|.+.|+.++
T Consensus 504 ~~~~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 504 LDLSAEHLKKAQEAGVKLA 522 (570)
T ss_pred cCccHHHHHHHHHcCCEEE
Confidence 2334567888888887543
No 164
>PRK02866 cyanate hydratase; Validated
Probab=27.12 E-value=1.1e+02 Score=24.67 Aligned_cols=62 Identities=24% Similarity=0.295 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCCceeeeccCCCCHHHHHHhHhhhcCCCCHHHHHHHHHH
Q 022300 216 TLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEV 279 (299)
Q Consensus 216 ~l~~la~~~~~s~aq~al~~~l~~~~v~~~i~g~~~~~~e~l~enl~a~~~~Lt~e~~~~i~~~ 279 (299)
.+.+.-.+.|+|-.++|=+=-++.-.+++++.|-..-++++.+-..+.+ .|+++....|...
T Consensus 9 ~Ll~AK~~kGLTw~~IA~~iG~S~v~vaaa~lGQ~~ls~e~A~kla~~L--gL~~~~~~~l~~~ 70 (147)
T PRK02866 9 KILAAKKEKGLTWADIAEAIGLSEVWVTAALLGQMTLPAEEAEKVAELL--GLDEDAVALLQEV 70 (147)
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHhCCCCCCHHHHHHHHHHh--CCCHHHHHHHhcC
Confidence 3333334445555554444444444444455555544777777777766 5889887776654
No 165
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=26.97 E-value=1.3e+02 Score=22.98 Aligned_cols=44 Identities=16% Similarity=0.150 Sum_probs=23.1
Q ss_pred HHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 022300 62 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 105 (299)
Q Consensus 62 ~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~ 105 (299)
+..+++.|+.+....+|.+++...+.-.....+....++.|...
T Consensus 51 R~~~~~ll~~~~~~~~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~ 94 (137)
T cd00338 51 RPGLQRLLADVKAGKIDVVLVEKLDRLSRNLVDLLELLELLEAH 94 (137)
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecchhhCCHHHHHHHHHHHHHC
Confidence 44444445555445666666666554444344555555555544
No 166
>COG1678 Putative transcriptional regulator [Transcription]
Probab=26.84 E-value=1.3e+02 Score=25.33 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHc-CcccEEEecCCCHHHHHHHHHcCCCeeEeeecccccccChhhHHHHHHHHhCCeEEEccc
Q 022300 94 DALNHLTDLKEE-GKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 165 (299)
Q Consensus 94 ~~~~~L~~l~~~-Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~p 165 (299)
++++++..-..- +..-++|.|.|.+-|+++=+..+.-+.+-..+--+|+..++...-+..++.||....+++
T Consensus 117 Dvl~~i~~~~~p~~~l~~lGYagW~~GQLE~Ei~~n~WL~~pA~~~~lF~~~~edrw~~al~~lGi~~~~lst 189 (194)
T COG1678 117 DVLEAIAAGKGPEKALVALGYAGWAAGQLEEEIEDNDWLTVPADPEILFDTPPEDRWARALRRLGIDLALLST 189 (194)
T ss_pred hHHHHHhccCCCCceEEEEEecccccchhHHHHhhCCEEEecCCHHHhcCCCHHHHHHHHHHHcCCCHHHcCC
Confidence 566666555333 356689999999999987666532233333344466677777788888888988777665
No 167
>PRK10188 DNA-binding transcriptional activator SdiA; Provisional
Probab=26.80 E-value=2.3e+02 Score=24.53 Aligned_cols=86 Identities=10% Similarity=0.168 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHc---CCCee
Q 022300 56 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN---GIPVV 132 (299)
Q Consensus 56 ~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~---~~~~~ 132 (299)
-+++.+...++....++|.+|+-+...+.+....+ ..+-++||+.+..+...+. .++|.
T Consensus 21 ~~~~~l~~~l~~~~~~~Gf~~~~~~~~~~~~~~~~------------------~~~~~~nyP~~W~~~Y~~~~y~~~DPv 82 (240)
T PRK10188 21 AAAEEVYHELQLQTQQLEYDYYSLCVRHPVPFTRP------------------KVAFYTTYPEAWVSHYQAENYFAIDPV 82 (240)
T ss_pred CCHHHHHHHHHHHHHHCCCccEeeecccCCCCCCC------------------ceEEecCCCHHHHHHHHHCCCeeeCHH
Confidence 37899999999999999999965533322111111 1355789998888777665 23333
Q ss_pred Eeeec--ccccc-----cChhhHHHHHHHHhCCe
Q 022300 133 SNQVQ--HSVVD-----MRPQQKMAELCQLTGVK 159 (299)
Q Consensus 133 ~~q~~--~n~~~-----~~~~~~~~~~~~~~gi~ 159 (299)
+.... ..++. ......+++.++++|+.
T Consensus 83 v~~~~~~~~P~~W~~~~~~~~~~~~~~a~~~Gl~ 116 (240)
T PRK10188 83 LKPENFSQGHLMWNDDLFSEAQALWDAARAHGLR 116 (240)
T ss_pred HHHHhcCCCCeeCCccccchHHHHHHHHHHcCCc
Confidence 32111 11111 12245689999998753
No 168
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=26.80 E-value=2.5e+02 Score=20.35 Aligned_cols=67 Identities=12% Similarity=0.044 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhcCCCcccEEEEecCC-----CCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHH
Q 022300 59 SIVRESIDVSRRRMDVPCLDMLQFHWWD-----YSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 125 (299)
Q Consensus 59 ~~i~~~ve~SL~~Lg~d~iDl~~lH~pd-----~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~ 125 (299)
..-.+++++-++.+|..-.++|+.-.+- .+.|+.+.+....-.+...|-++.-=+--++.+++.+++
T Consensus 19 ~~R~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~~G~v~~et~~a~~~~e~~~~~ 90 (91)
T PF08734_consen 19 PDRAEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRSSGNVRTETLRAFPWDEFDEIV 90 (91)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHcCCceEEEEEecCCHHHHHHHh
Confidence 5566788889999999999999886541 223445677888888999999888666677788777664
No 169
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=26.64 E-value=1.4e+02 Score=28.32 Aligned_cols=80 Identities=14% Similarity=0.185 Sum_probs=48.8
Q ss_pred EecCCCHHHHHHHHHc----CCCeeEeeecccccccChhhHHHHHHHHhC--CeEEEcccccccccCCcccCCCCCCCCC
Q 022300 112 ALTNFDTERLRIILEN----GIPVVSNQVQHSVVDMRPQQKMAELCQLTG--VKLITYGTVMGGLLSEKFLDTNLSIPFA 185 (299)
Q Consensus 112 Gvs~~~~~~l~~~~~~----~~~~~~~q~~~n~~~~~~~~~~~~~~~~~g--i~v~~~~pl~~G~L~~~~~~~~~~~~~~ 185 (299)
.+...+++.+-..++. |+.|..+-...| .+.++.+++.+ ++++++ +|.++++
T Consensus 133 ~~~~mt~d~~~~~ie~qa~dGVDfmTiH~Gi~-------~~~~~~~~~~~R~~giVSR---GGs~~~~------------ 190 (423)
T TIGR00190 133 AVEDMDEDDMFRAIEKQAKDGVDFMTIHAGVL-------LEYVERLKRSGRITGIVSR---GGAILAA------------ 190 (423)
T ss_pred ChhhCCHHHHHHHHHHHHHhCCCEEEEccchh-------HHHHHHHHhCCCccCeecC---cHHHHHH------------
Confidence 5667788887776665 777776655554 36778887755 566654 2222211
Q ss_pred CCCCCCchhHHHHhhhhhcCCchHHHHHHHHHHHHHHHhCCC
Q 022300 186 GPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVS 227 (299)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s 227 (299)
+.....+++-+-+-++.+.+|+++|.+|
T Consensus 191 --------------WM~~~~~ENPlye~fD~lLeI~~~yDVt 218 (423)
T TIGR00190 191 --------------WMLHHHKENPLYKNFDYILEIAKEYDVT 218 (423)
T ss_pred --------------HHHHcCCcCchHHHHHHHHHHHHHhCee
Confidence 1112233333444578999999999886
No 170
>PRK08392 hypothetical protein; Provisional
Probab=26.60 E-value=3.9e+02 Score=22.53 Aligned_cols=82 Identities=13% Similarity=0.182 Sum_probs=49.4
Q ss_pred CCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCC-------C-HHHHHH----HHHcCCCeeEeeeccccc
Q 022300 74 VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF-------D-TERLRI----ILENGIPVVSNQVQHSVV 141 (299)
Q Consensus 74 ~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~-------~-~~~l~~----~~~~~~~~~~~q~~~n~~ 141 (299)
.||+ +.-+|... ..+...+-++.+.++.+.|.+.-+|--.. . .+.+.+ +.+.+..+.+|- .+
T Consensus 86 ~D~v-I~SvH~~~-~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt-~~--- 159 (215)
T PRK08392 86 LDYV-IASVHEWF-GRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISS-RY--- 159 (215)
T ss_pred CCEE-EEEeecCc-CCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeC-CC---
Confidence 4666 66778532 22224677788888889998888875321 1 123333 333366666664 12
Q ss_pred ccChhhHHHHHHHHhCCeEEE
Q 022300 142 DMRPQQKMAELCQLTGVKLIT 162 (299)
Q Consensus 142 ~~~~~~~~~~~~~~~gi~v~~ 162 (299)
+.+...+++.|++.|+.++.
T Consensus 160 -~~p~~~~l~~~~~~G~~~~i 179 (215)
T PRK08392 160 -RVPDLEFIRECIKRGIKLTF 179 (215)
T ss_pred -CCCCHHHHHHHHHcCCEEEE
Confidence 23445789999999976543
No 171
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=26.29 E-value=3.5e+02 Score=22.88 Aligned_cols=66 Identities=14% Similarity=0.215 Sum_probs=39.0
Q ss_pred HHHHHcCcccEEEecCCCHHHHHHHHHc--CCCeeEe----------------------eecccccc---cChhhHHHHH
Q 022300 100 TDLKEEGKIKTVALTNFDTERLRIILEN--GIPVVSN----------------------QVQHSVVD---MRPQQKMAEL 152 (299)
Q Consensus 100 ~~l~~~Gkir~iGvs~~~~~~l~~~~~~--~~~~~~~----------------------q~~~n~~~---~~~~~~~~~~ 152 (299)
+.+++.|....+=+++|+.+.+..+.+. .++.... ...+..++ .....++++.
T Consensus 110 ~~l~~~~~~~~v~i~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 189 (226)
T cd08568 110 EIVEKFNALDRVIFSSFNHDALRELRKLDPDAKVGLLIGEEEEGFSIPELHEKLKLYSLHVPIDAIGYIGFEKFVELLRL 189 (226)
T ss_pred HHHHHcCCCCcEEEEECCHHHHHHHHHhCCCCcEEEEeeccccccCHHHHHHhcCCcEeccchhhhccccccccHHHHHH
Confidence 3344557677788888988888877765 2221111 11111110 0001468899
Q ss_pred HHHhCCeEEEccc
Q 022300 153 CQLTGVKLITYGT 165 (299)
Q Consensus 153 ~~~~gi~v~~~~p 165 (299)
++++|+.|.+|..
T Consensus 190 ~~~~G~~v~~WTv 202 (226)
T cd08568 190 LRKLGLKIVLWTV 202 (226)
T ss_pred HHHCCCEEEEEcC
Confidence 9999999999953
No 172
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=26.17 E-value=2.1e+02 Score=25.73 Aligned_cols=68 Identities=16% Similarity=0.249 Sum_probs=49.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCCceeeeccCCCCHHHHHHhHhhhc--------CC--CCHHHHHHHHHHHhcCC
Q 022300 215 QTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFM--------LS--LDEDDVNSIQEVTKKGK 284 (299)
Q Consensus 215 ~~l~~la~~~~~s~aq~al~~~l~~~~v~~~i~g~~~~~~e~l~enl~a~~--------~~--Lt~e~~~~i~~~~~~~~ 284 (299)
+...+++++++....=-.+.=++..+.|..|++.+. +..|..-.+++++ +| +|.+|.++|-++.++..
T Consensus 41 ~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp--~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~ 118 (342)
T COG0673 41 ERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATP--NALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAG 118 (342)
T ss_pred HHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCC--ChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcC
Confidence 567889999998722223666788888888888887 7777776666664 33 68899999988877763
No 173
>PRK10508 hypothetical protein; Provisional
Probab=26.14 E-value=1.2e+02 Score=28.00 Aligned_cols=41 Identities=10% Similarity=0.011 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHH
Q 022300 57 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLK 103 (299)
Q Consensus 57 ~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~ 103 (299)
+++.|.+.+++..+++|+|.+ +++.... + .++.++.++-|.
T Consensus 287 tpe~V~~kl~~l~~~~g~del---~~~~~~~--~-~e~~~~S~~lla 327 (333)
T PRK10508 287 DKAKVRHGLQSILRETQADEI---MVNGQIF--D-HQARLHSFELAM 327 (333)
T ss_pred CHHHHHHHHHHHHHHHCcCEE---EEECCCC--C-HHHHHHHHHHHH
Confidence 789999999999999998887 3333322 2 455555555443
No 174
>PRK06740 histidinol-phosphatase; Validated
Probab=26.11 E-value=5.1e+02 Score=23.71 Aligned_cols=99 Identities=13% Similarity=0.119 Sum_probs=57.7
Q ss_pred HHHHHHHhhcCCCcccEEEEecCCCC---CCc-------------HHHHHHHHHHHHHcCcccEEEecC------CCH--
Q 022300 63 ESIDVSRRRMDVPCLDMLQFHWWDYS---NPG-------------YLDALNHLTDLKEEGKIKTVALTN------FDT-- 118 (299)
Q Consensus 63 ~~ve~SL~~Lg~d~iDl~~lH~pd~~---~~~-------------~~~~~~~L~~l~~~Gkir~iGvs~------~~~-- 118 (299)
..+++.|.....||+ +.-+|..+.. .+. ...-++.+.++.+.|.+..||=-. +..
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f~~~~~~ 234 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHLDNIKVFNYRLDE 234 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhcCCCcch
Confidence 345556666777887 8888975311 111 123457888888999999888442 111
Q ss_pred ----HHHHHH----HHcCCCeeEeee-cc--cccccChhhHHHHHHHHhCCeEEE
Q 022300 119 ----ERLRII----LENGIPVVSNQV-QH--SVVDMRPQQKMAELCQLTGVKLIT 162 (299)
Q Consensus 119 ----~~l~~~----~~~~~~~~~~q~-~~--n~~~~~~~~~~~~~~~~~gi~v~~ 162 (299)
..+.++ .+.+..+.+|-- .+ ..-+.-+...+++.|++.|+.++.
T Consensus 235 ~~~~~~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~~~il~~~~e~Gv~~tl 289 (331)
T PRK06740 235 NEQLSYYKEIARALVETNTATEINAGLYYRYPVREMCPSPLFLQVLAKHEVPITL 289 (331)
T ss_pred hhhHHHHHHHHHHHHHcCCEEEEECccccCCCCCCCCcCHHHHHHHHHCCCeEEE
Confidence 233333 223777777763 22 111122345789999999987654
No 175
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=26.07 E-value=1.5e+02 Score=17.35 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHH
Q 022300 212 VLLQTLKRIASKHGVSIPVVAV 233 (299)
Q Consensus 212 ~~~~~l~~la~~~~~s~aq~al 233 (299)
+..+.+.++|++.|.|.+++.-
T Consensus 9 ~~~~~l~~~a~~~g~s~s~~ir 30 (39)
T PF01402_consen 9 ELYERLDELAKELGRSRSELIR 30 (39)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHH
Confidence 3468899999999999887543
No 176
>PRK09726 antitoxin HipB; Provisional
Probab=25.85 E-value=82 Score=22.59 Aligned_cols=55 Identities=11% Similarity=0.056 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCCceeeeccCCCCHHHHHHhHhhhcCCC
Q 022300 214 LQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSL 268 (299)
Q Consensus 214 ~~~l~~la~~~~~s~aq~al~~~l~~~~v~~~i~g~~~~~~e~l~enl~a~~~~L 268 (299)
...++.+..+.|+|..++|-+--++++.|....-|.+..+.+.|...+.+++..+
T Consensus 14 ~~~lk~~R~~~gltq~elA~~~gvs~~tis~~e~g~~~ps~~~l~~ia~~lgv~~ 68 (88)
T PRK09726 14 ANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSM 68 (88)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCc
Confidence 4566777777788877777766555554444444433225566666666666543
No 177
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=25.71 E-value=2.2e+02 Score=21.44 Aligned_cols=52 Identities=12% Similarity=0.049 Sum_probs=31.3
Q ss_pred cCCCHHHHHHHHHcCCCeeEeeecccccccChhhHHHHHHHHhCCeEEEcccc
Q 022300 114 TNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 166 (299)
Q Consensus 114 s~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~pl 166 (299)
+..+.+.+..+.... .|+++-+.-..-.+....++.++++++||++..+.+-
T Consensus 37 ~~l~~~~l~~~~~~~-~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 37 SDLDPEALLPLLAED-RPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred ccCCHHHHHHHHhhC-CCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 344556666655543 3555444443322334457889999999999987544
No 178
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=25.69 E-value=3.1e+02 Score=23.07 Aligned_cols=85 Identities=16% Similarity=0.153 Sum_probs=52.4
Q ss_pred CcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHcCCCeeEeeeccc-ccccChhhHHHHHH
Q 022300 75 PCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHS-VVDMRPQQKMAELC 153 (299)
Q Consensus 75 d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n-~~~~~~~~~~~~~~ 153 (299)
.-..+..+.+.. .. +...+|.+.|-. .+-+.-.+.+.+.++++ |....++-+..+ .-.......++++|
T Consensus 21 ~~~~V~~l~R~~-----~~---~~~~~l~~~g~~-vv~~d~~~~~~l~~al~-g~d~v~~~~~~~~~~~~~~~~~li~Aa 90 (233)
T PF05368_consen 21 AGFSVRALVRDP-----SS---DRAQQLQALGAE-VVEADYDDPESLVAALK-GVDAVFSVTPPSHPSELEQQKNLIDAA 90 (233)
T ss_dssp TTGCEEEEESSS-----HH---HHHHHHHHTTTE-EEES-TT-HHHHHHHHT-TCSEEEEESSCSCCCHHHHHHHHHHHH
T ss_pred CCCCcEEEEecc-----ch---hhhhhhhcccce-EeecccCCHHHHHHHHc-CCceEEeecCcchhhhhhhhhhHHHhh
Confidence 456788887753 11 234456666663 45555557788887776 565555555533 21222345699999
Q ss_pred HHhCCeEEEccccccc
Q 022300 154 QLTGVKLITYGTVMGG 169 (299)
Q Consensus 154 ~~~gi~v~~~~pl~~G 169 (299)
++.||..+.++.++..
T Consensus 91 ~~agVk~~v~ss~~~~ 106 (233)
T PF05368_consen 91 KAAGVKHFVPSSFGAD 106 (233)
T ss_dssp HHHT-SEEEESEESSG
T ss_pred hccccceEEEEEeccc
Confidence 9999999999888665
No 179
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.47 E-value=5.4e+02 Score=23.75 Aligned_cols=100 Identities=11% Similarity=0.142 Sum_probs=0.0
Q ss_pred EEEEecCC----------CCCCcHHHHHHHHHH-HHHcCc---ccEEEec--CCCHHHHHHHHHc--CCCeeEeeecccc
Q 022300 79 MLQFHWWD----------YSNPGYLDALNHLTD-LKEEGK---IKTVALT--NFDTERLRIILEN--GIPVVSNQVQHSV 140 (299)
Q Consensus 79 l~~lH~pd----------~~~~~~~~~~~~L~~-l~~~Gk---ir~iGvs--~~~~~~l~~~~~~--~~~~~~~q~~~n~ 140 (299)
++-||.++ .....++++.+++.+ +.+.|+ ++++=+. |.+.+.++++.+. +....++-++||.
T Consensus 211 aisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~rv~iey~LI~gvNDs~eda~~La~llk~l~~~VnLiPyn~ 290 (342)
T PRK14454 211 AISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNRRITFEYALVKGVNDSKEDAKELGKLLKGMLCHVNLIPVNE 290 (342)
T ss_pred EEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCCEEEEEEEeECCCCCCHHHHHHHHHHHhcCCceEEEEecCC
Q ss_pred cccCh--------hhHHHHHHHHhCCeEEEcccccc------cccCCcccCC
Q 022300 141 VDMRP--------QQKMAELCQLTGVKLITYGTVMG------GLLSEKFLDT 178 (299)
Q Consensus 141 ~~~~~--------~~~~~~~~~~~gi~v~~~~pl~~------G~L~~~~~~~ 178 (299)
+.... -..+.+..+++|+.+......+. |.|..+...+
T Consensus 291 ~~~~~~~~ps~e~l~~f~~~l~~~gi~v~iR~~~G~di~aaCGQL~~~~~~~ 342 (342)
T PRK14454 291 VKENGFKKSSKEKIKKFKNILKKNGIETTIRREMGSDINAACGQLRRSYLKS 342 (342)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCchhhcCcccchhhccC
No 180
>PF00292 PAX: 'Paired box' domain; InterPro: IPR001523 The paired box is a conserved 124 amino acid N-terminal domain of unknown function that usually, but not always, precedes a homeobox domain (see IPR001356 from INTERPRO) [, ]. Paired box genes are expressed in alternate segments of the developing fruit fly, the observed grouping of segments into pairs depending on the position of the segment in the segmental array, and not on the identity of the segment as in the case of homeotic genes. This implies that the genes affect different processes from those altered by homeotic genes.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 6PAX_A 1K78_E 1MDM_A 2K27_A 1PDN_C.
Probab=25.41 E-value=9.7 Score=29.78 Aligned_cols=72 Identities=14% Similarity=0.133 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceeee-----ccCCCCHHHHHHhHhhhcCCCCHHHHHHHHHHHhcCCCC
Q 022300 212 VLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMI-----GVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGKDL 286 (299)
Q Consensus 212 ~~~~~l~~la~~~~~s~aq~al~~~l~~~~v~~~i~-----g~~~~~~e~l~enl~a~~~~Lt~e~~~~i~~~~~~~~~~ 286 (299)
++...+-+++.+ |+.+.++|-+.-.+++.|+-++- |.- .+..+... --...|++.++.|++..+.++++
T Consensus 21 ~~R~rIvela~~-G~rp~~Isr~l~Vs~gcVsKIl~Ry~eTGsi--~Pg~iGGs---kprv~tp~v~~~I~~~k~enP~i 94 (125)
T PF00292_consen 21 ELRQRIVELAKE-GVRPCDISRQLRVSHGCVSKILSRYRETGSI--RPGPIGGS---KPRVATPEVVEKIEQYKRENPTI 94 (125)
T ss_dssp HHHHHHHHHHHT-T--HHHHHHHHT--HHHHHHHHHHHHHHS-S--S----S-------SSS-HCHHHHHHHHHHH-TTS
T ss_pred HHHHHHHHHhhh-cCCHHHHHHHHccchhHHHHHHHHHHHhccc--CcccccCC---CCCCCChHHHHHHHHHHhcCCCc
Confidence 445778888864 99999999999999888776442 222 33222110 11247778888999988888888
Q ss_pred Ccc
Q 022300 287 LGV 289 (299)
Q Consensus 287 ~~~ 289 (299)
+.|
T Consensus 95 faw 97 (125)
T PF00292_consen 95 FAW 97 (125)
T ss_dssp -HH
T ss_pred chH
Confidence 877
No 181
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=25.35 E-value=3.7e+02 Score=21.75 Aligned_cols=90 Identities=12% Similarity=0.052 Sum_probs=45.2
Q ss_pred CcEEEEe-cccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHH---HcCcccEEEecC-
Q 022300 41 SSWISLT-KWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLK---EEGKIKTVALTN- 115 (299)
Q Consensus 41 ~~i~I~t-K~~~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~---~~Gkir~iGvs~- 115 (299)
-.+.|+| |-.......+.+.+...++..|+.+|.+...++.-|......+.-+-...+++++. +...+-+||=+.
T Consensus 59 ~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~~ 138 (166)
T TIGR01664 59 YKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPIQVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAAG 138 (166)
T ss_pred CEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCCC
Confidence 3566666 43222234466777788899999999976333333322222332223333444432 334466666322
Q ss_pred ----CCHHHHHHHHHcCCC
Q 022300 116 ----FDTERLRIILENGIP 130 (299)
Q Consensus 116 ----~~~~~l~~~~~~~~~ 130 (299)
+....++.+...|++
T Consensus 139 ~~~~~~~~Di~aA~~aGi~ 157 (166)
T TIGR01664 139 RKLDFSDADIKFAKNLGLE 157 (166)
T ss_pred CCCCCchhHHHHHHHCCCC
Confidence 123455555554443
No 182
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=25.30 E-value=4.3e+02 Score=25.08 Aligned_cols=81 Identities=14% Similarity=0.152 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHc-CCCeeEeeecccccccChh-hHHHHHHHHhCCeEEEccccccc
Q 022300 92 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQ-QKMAELCQLTGVKLITYGTVMGG 169 (299)
Q Consensus 92 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~~~~pl~~G 169 (299)
+..++..++.+.++.-|....+...+.+.+.+.+.. ..+..++..+=|++..-.+ ..+.+.|+++|+-++.=.+++.+
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP 191 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP 191 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccc
Confidence 567888899998888888888887777666666653 5788899999998766554 45899999999888887788777
Q ss_pred ccC
Q 022300 170 LLS 172 (299)
Q Consensus 170 ~L~ 172 (299)
.+.
T Consensus 192 ~~q 194 (396)
T COG0626 192 VLQ 194 (396)
T ss_pred ccc
Confidence 654
No 183
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=25.18 E-value=4.2e+02 Score=25.23 Aligned_cols=70 Identities=14% Similarity=0.138 Sum_probs=45.9
Q ss_pred HHHHHHHHHc------CcccEEEecCCCHHHHHHHHHcCCCeeEeeeccccccc-ChhhHHHHHHHHhCCeEEEcccc
Q 022300 96 LNHLTDLKEE------GKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTV 166 (299)
Q Consensus 96 ~~~L~~l~~~------Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~~~~pl 166 (299)
++.+.+|++. .---..+=+-++.+.+..+++. -..+++|+-.+-.-. ..-.++.++|+.+|+.++..+..
T Consensus 281 ~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~-~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 281 IEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDA-KAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTC 357 (408)
T ss_pred HHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHh-CCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCC
Confidence 5555566554 3333445556678888888775 346777777764321 22357899999999999987654
No 184
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=25.16 E-value=4.4e+02 Score=22.76 Aligned_cols=59 Identities=12% Similarity=0.185 Sum_probs=34.3
Q ss_pred CcccEEEecCCCHHHHHHHHHc--CCCeeEee-------------e---cccccccChhhHHHHHHHHhCCeEEEcc
Q 022300 106 GKIKTVALTNFDTERLRIILEN--GIPVVSNQ-------------V---QHSVVDMRPQQKMAELCQLTGVKLITYG 164 (299)
Q Consensus 106 Gkir~iGvs~~~~~~l~~~~~~--~~~~~~~q-------------~---~~n~~~~~~~~~~~~~~~~~gi~v~~~~ 164 (299)
+..+.+=+++|+.+.+..+.+. .++....- . .+++-......++++.++++|+.|.+|.
T Consensus 140 ~~~~~v~v~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~WT 216 (249)
T PRK09454 140 GAAVPPLLSSFSEDALEAARQAAPELPRGLLLDEWPDDWLELTRRLGCVSLHLNHKLLDEARVAALKAAGLRILVYT 216 (249)
T ss_pred CCCCCEEEEeCCHHHHHHHHHhCCCCcEEEEeccccccHHHHHHhcCCeEEecccccCCHHHHHHHHHCCCEEEEEe
Confidence 4445577788888877777664 11111100 0 0111111123578999999999999995
No 185
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=25.08 E-value=3.8e+02 Score=24.78 Aligned_cols=75 Identities=21% Similarity=0.251 Sum_probs=47.1
Q ss_pred CcEEEEecccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCC-CCCCcHHHH-HHHHHHHHHcCcccEEEecCCCH
Q 022300 41 SSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWD-YSNPGYLDA-LNHLTDLKEEGKIKTVALTNFDT 118 (299)
Q Consensus 41 ~~i~I~tK~~~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd-~~~~~~~~~-~~~L~~l~~~Gkir~iGvs~~~~ 118 (299)
+-++++|=.. +-+.+.++++.-+++ |. .|+.+||+.. +..+ .+++ +.+|..|.+.= -.-||+|.|+.
T Consensus 148 kPiIlSTGma------~~~ei~~av~~~r~~-g~--~~i~LLhC~s~YPap-~ed~NL~~i~~l~~~F-n~~vGlSDHT~ 216 (347)
T COG2089 148 KPIILSTGMA------TIEEIEEAVAILREN-GN--PDIALLHCTSAYPAP-FEDVNLKAIPKLAEAF-NAIVGLSDHTL 216 (347)
T ss_pred CCEEEEcccc------cHHHHHHHHHHHHhc-CC--CCeEEEEecCCCCCC-HHHhhHHHHHHHHHHh-CCccccccCcc
Confidence 4666666552 457788888765444 43 3999999864 2333 4443 66666666653 44699999988
Q ss_pred HHHHHHHH
Q 022300 119 ERLRIILE 126 (299)
Q Consensus 119 ~~l~~~~~ 126 (299)
.-+..+..
T Consensus 217 g~~a~l~A 224 (347)
T COG2089 217 GILAPLAA 224 (347)
T ss_pred chhHHHHH
Confidence 75544433
No 186
>PF13467 RHH_4: Ribbon-helix-helix domain; PDB: 3KK4_C.
Probab=24.94 E-value=85 Score=21.66 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Q 022300 214 LQTLKRIASKHGVSIPVVAVRYILDQ 239 (299)
Q Consensus 214 ~~~l~~la~~~~~s~aq~al~~~l~~ 239 (299)
++.|.+||+..|+|.++++-..-...
T Consensus 23 W~~L~eiA~~~g~s~~~li~~id~~r 48 (67)
T PF13467_consen 23 WDALEEIAAREGLSLNALIAEIDARR 48 (67)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 58999999999999998876664333
No 187
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=24.90 E-value=1.5e+02 Score=25.11 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHhCCCCceeeeccCCCCHHHHHHhHhhh
Q 022300 226 VSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF 264 (299)
Q Consensus 226 ~s~aq~al~~~l~~~~v~~~i~g~~~~~~e~l~enl~a~ 264 (299)
-|-.++||+|++.++.-..+++|+.-.+.+|.-.|+..+
T Consensus 72 ~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~L 110 (203)
T TIGR01378 72 TTDLELALKYALERGADEITILGATGGRLDHTLANLNLL 110 (203)
T ss_pred CCHHHHHHHHHHHCCCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 577899999999987666788898888899999999765
No 188
>PLN02428 lipoic acid synthase
Probab=24.75 E-value=5.7e+02 Score=23.77 Aligned_cols=99 Identities=19% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHhhcCCCcccEEEEecCCC----------CCCcHHHHHHHHHHHHHc--CcccE----EEecCCCHHHHHHHHHc--
Q 022300 66 DVSRRRMDVPCLDMLQFHWWDY----------SNPGYLDALNHLTDLKEE--GKIKT----VALTNFDTERLRIILEN-- 127 (299)
Q Consensus 66 e~SL~~Lg~d~iDl~~lH~pd~----------~~~~~~~~~~~L~~l~~~--Gkir~----iGvs~~~~~~l~~~~~~-- 127 (299)
++.|+.|.-.-+|. +-|+++. ..-..++.++.|+.+++. |..-. +|+ .-+.+++.+.+..
T Consensus 195 ~elL~~L~eAG~d~-i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~~Lr 272 (349)
T PLN02428 195 LGAVETVATSGLDV-FAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTMEDLR 272 (349)
T ss_pred HHHHHHHHHcCCCE-EccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHHHHH
Q ss_pred CCCeeEeee-cc-----------cccccChhhHHHHHHHHhCCeEEEcccc
Q 022300 128 GIPVVSNQV-QH-----------SVVDMRPQQKMAELCQLTGVKLITYGTV 166 (299)
Q Consensus 128 ~~~~~~~q~-~~-----------n~~~~~~~~~~~~~~~~~gi~v~~~~pl 166 (299)
...++++.+ +| ....+..-..+-+.+.+.|...++.+||
T Consensus 273 elgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~ 323 (349)
T PLN02428 273 AAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPL 323 (349)
T ss_pred HcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCc
No 189
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.69 E-value=3.3e+02 Score=23.27 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCC-CHHHHHHHHHcCCCeeEee
Q 022300 57 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF-DTERLRIILENGIPVVSNQ 135 (299)
Q Consensus 57 ~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~~~~~q 135 (299)
+++...+-++ .|..-|++.|-+= + . ..+.++.++.++++.-=..||..+- +.++++.+.+.|-.|.+.
T Consensus 25 ~~~~a~~i~~-al~~~Gi~~iEit---l---~---~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fivs- 93 (212)
T PRK05718 25 KLEDAVPLAK-ALVAGGLPVLEVT---L---R---TPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVS- 93 (212)
T ss_pred CHHHHHHHHH-HHHHcCCCEEEEe---c---C---CccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEEC-
Confidence 4566655554 3555555555544 2 1 2245566667766533356887754 678888898887666643
Q ss_pred ecccccccChhhHHHHHHHHhCCeEEE
Q 022300 136 VQHSVVDMRPQQKMAELCQLTGVKLIT 162 (299)
Q Consensus 136 ~~~n~~~~~~~~~~~~~~~~~gi~v~~ 162 (299)
+....++++.|++.|+.++.
T Consensus 94 -------P~~~~~vi~~a~~~~i~~iP 113 (212)
T PRK05718 94 -------PGLTPPLLKAAQEGPIPLIP 113 (212)
T ss_pred -------CCCCHHHHHHHHHcCCCEeC
Confidence 22234799999999987774
No 190
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=24.64 E-value=4.4e+02 Score=24.09 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=49.9
Q ss_pred HHHHHHHHHHcCccc-EEEecCCCHHHHHHHHHcCCCeeEeeecccccc-cChhhHHHHHHHHhCCeEEEcc
Q 022300 95 ALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVD-MRPQQKMAELCQLTGVKLITYG 164 (299)
Q Consensus 95 ~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~-~~~~~~~~~~~~~~gi~v~~~~ 164 (299)
-++.+.+|++...+. +.|=+.++...+..+++. -.++++|+..+-.- -..-.++...|+++|+.++.+.
T Consensus 210 d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~-~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 210 DIEGYAELKKATGIPISTGEHEYTVYGFKRLLEG-RAVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred CHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHc-CCCCEEecCccccCCHHHHHHHHHHHHHcCCeecccc
Confidence 466777788876666 666677788999998886 34777887766432 1223578999999999988764
No 191
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=24.59 E-value=6e+02 Score=24.01 Aligned_cols=92 Identities=13% Similarity=0.150 Sum_probs=49.3
Q ss_pred CCcEEEEecccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCc---HHHHHHHHHHH-------HHcCccc
Q 022300 40 QSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPG---YLDALNHLTDL-------KEEGKIK 109 (299)
Q Consensus 40 R~~i~I~tK~~~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~---~~~~~~~L~~l-------~~~Gkir 109 (299)
-+-|+|.|-+.+.--+.+.+.+.+.+++-.-. .-.+.++.+|.|+..... .+.++++|-+. ++.++|-
T Consensus 82 p~~I~v~~tC~~~liGdDi~~v~~~~~~~~~~--~~~~~vi~v~tpgf~g~~~~G~~~a~~al~~~~~~~~~~~~~~~VN 159 (428)
T cd01965 82 PDVIGVLTTCLTETIGDDVAGFIKEFRAEGPE--PADFPVVYASTPSFKGSHETGYDNAVKAIIEQLAKPSEVKKNGKVN 159 (428)
T ss_pred CCEEEEECCcchhhcCCCHHHHHHHHHhhccC--CCCCeEEEeeCCCCCCcHHHHHHHHHHHHHHHHhcccCCCCCCeEE
Confidence 45678888775533333333333333221100 124678888888766432 33445444432 2345677
Q ss_pred EEEecCC---CHHHHHHHHHc-CCCeeE
Q 022300 110 TVALTNF---DTERLRIILEN-GIPVVS 133 (299)
Q Consensus 110 ~iGvs~~---~~~~l~~~~~~-~~~~~~ 133 (299)
-||-++. +.++++.+++. |+++..
T Consensus 160 lig~~~~~~~d~~el~~lL~~~Gl~v~~ 187 (428)
T cd01965 160 LLPGFPLTPGDVREIKRILEAFGLEPII 187 (428)
T ss_pred EECCCCCCccCHHHHHHHHHHcCCCEEE
Confidence 7875554 35777777776 554443
No 192
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=24.51 E-value=63 Score=28.30 Aligned_cols=68 Identities=22% Similarity=0.240 Sum_probs=36.4
Q ss_pred CcEEEEecccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCC-CCCCcHHHHHHHHHHHHHc-CcccEEEecCCCH
Q 022300 41 SSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWD-YSNPGYLDALNHLTDLKEE-GKIKTVALTNFDT 118 (299)
Q Consensus 41 ~~i~I~tK~~~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd-~~~~~~~~~~~~L~~l~~~-Gkir~iGvs~~~~ 118 (299)
.-++|+|=. -+.+.|.++++.-.+.- .-|+.++|+.. +..+.-+--+..+..|++. | --||+|.|+.
T Consensus 114 kPvIlSTG~------stl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~--~~vG~SDHt~ 182 (241)
T PF03102_consen 114 KPVILSTGM------STLEEIERAVEVLREAG---NEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG--VPVGYSDHTD 182 (241)
T ss_dssp S-EEEE-TT--------HHHHHHHHHHHHHHC---T--EEEEEE-SSSS--GGG--TTHHHHHHHHST--SEEEEEE-SS
T ss_pred CcEEEECCC------CCHHHHHHHHHHHHhcC---CCCEEEEecCCCCCCChHHcChHHHHHHHHhcC--CCEEeCCCCC
Confidence 445555543 24677777777653333 57999999874 2333223346777777755 4 5689998876
Q ss_pred H
Q 022300 119 E 119 (299)
Q Consensus 119 ~ 119 (299)
.
T Consensus 183 g 183 (241)
T PF03102_consen 183 G 183 (241)
T ss_dssp S
T ss_pred C
Confidence 4
No 193
>PLN02389 biotin synthase
Probab=24.28 E-value=6e+02 Score=23.85 Aligned_cols=107 Identities=14% Similarity=0.100 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEe-cCCCCCCcHHHHHHHHHHHHHcCcccEEEec--CCCHHHHHHHHHcCCCee
Q 022300 56 MTSSIVRESIDVSRRRMDVPCLDMLQFH-WWDYSNPGYLDALNHLTDLKEEGKIKTVALT--NFDTERLRIILENGIPVV 132 (299)
Q Consensus 56 ~~~~~i~~~ve~SL~~Lg~d~iDl~~lH-~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs--~~~~~~l~~~~~~~~~~~ 132 (299)
++++.|.+.+++. +..|...+-+.--. ........++.+++.+..+++.|. .+.++ ..+.++++++.+.|..
T Consensus 116 Ls~EeIl~~a~~~-~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l--~i~~s~G~l~~E~l~~LkeAGld-- 190 (379)
T PLN02389 116 MSKDDVLEAAKRA-KEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGM--EVCCTLGMLEKEQAAQLKEAGLT-- 190 (379)
T ss_pred CCHHHHHHHHHHH-HHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCc--EEEECCCCCCHHHHHHHHHcCCC--
Confidence 5889999988874 45688776543111 111111126788888888886663 34444 3567888888887643
Q ss_pred Eeeeccc-------ccc--cChh--hHHHHHHHHhCCeEEEccccc
Q 022300 133 SNQVQHS-------VVD--MRPQ--QKMAELCQLTGVKLITYGTVM 167 (299)
Q Consensus 133 ~~q~~~n-------~~~--~~~~--~~~~~~~~~~gi~v~~~~pl~ 167 (299)
.+++.+. -+. ...+ .+.++.+++.|+.+.+..-++
T Consensus 191 ~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiG 236 (379)
T PLN02389 191 AYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIG 236 (379)
T ss_pred EEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEEC
Confidence 2222222 111 1111 357899999999887654443
No 194
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.28 E-value=5.7e+02 Score=23.57 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHcCcc---cEEEec--CCCHHHHHHHHHc--CCCeeEeeecccccccC----hhh---HHHHHH--HH
Q 022300 92 YLDALNHLTDLKEEGKI---KTVALT--NFDTERLRIILEN--GIPVVSNQVQHSVVDMR----PQQ---KMAELC--QL 155 (299)
Q Consensus 92 ~~~~~~~L~~l~~~Gki---r~iGvs--~~~~~~l~~~~~~--~~~~~~~q~~~n~~~~~----~~~---~~~~~~--~~ 155 (299)
++++++++..+.+.|+- .++=+. |.+.+.++++.+. +....++-++||+.... .+. .+.+.. ++
T Consensus 230 le~il~ai~~~~~~~rri~ieyvLI~GvNDseeda~~La~llk~l~~~vnlI~~N~~~~~~~~p~~~~i~~f~~~l~~~~ 309 (336)
T PRK14470 230 LDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLAGIPVRLNPIAVNDATGRYRPPDEDEWNAFRDALAREL 309 (336)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEEEecccCCHHHHHHHHHHHhcCCCeEEEeccCCCCCCccCCCHHHHHHHHHHHHHcc
Confidence 67889999998887542 222222 5677777777765 67789999999984431 122 345555 35
Q ss_pred hCCeEEEcccccc
Q 022300 156 TGVKLITYGTVMG 168 (299)
Q Consensus 156 ~gi~v~~~~pl~~ 168 (299)
+|+.+......+.
T Consensus 310 ~g~~~~~R~~~G~ 322 (336)
T PRK14470 310 PGTPVVRRYSGGQ 322 (336)
T ss_pred CCeEEEEECCCCC
Confidence 6888888776655
No 195
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=24.10 E-value=4.2e+02 Score=22.42 Aligned_cols=86 Identities=20% Similarity=0.255 Sum_probs=52.4
Q ss_pred HHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcC----cccEEEecCCCHHHHHHHHHcCCCeeEeeeccc
Q 022300 64 SIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG----KIKTVALTNFDTERLRIILENGIPVVSNQVQHS 139 (299)
Q Consensus 64 ~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~G----kir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n 139 (299)
.+++-+++|.---+|-++++++ + .+.-+++.| .+-..++..++...++.+.+.|..-.++-.+.|
T Consensus 3 ~~~~~l~~l~~~g~dgi~v~~~--------g---~~~~~k~~~~~~~i~~~~~~nv~N~~s~~~~~~~G~~~i~ls~EL~ 71 (233)
T PF01136_consen 3 ELEKYLDKLKELGVDGILVSNP--------G---LLELLKELGPDLKIIADYSLNVFNSESARFLKELGASRITLSPELS 71 (233)
T ss_pred HHHHHHHHHHhCCCCEEEEcCH--------H---HHHHHHHhCCCCcEEEecCccCCCHHHHHHHHHcCCCEEEECccCC
Confidence 3444444444345677888874 2 333444442 233345558889999888887776666666665
Q ss_pred ccccChhhHHHHHHHHh---CCeEEEcccc
Q 022300 140 VVDMRPQQKMAELCQLT---GVKLITYGTV 166 (299)
Q Consensus 140 ~~~~~~~~~~~~~~~~~---gi~v~~~~pl 166 (299)
. .++.+.++.. .+.+++++.+
T Consensus 72 ~------~ei~~i~~~~~~~~~Ev~v~G~~ 95 (233)
T PF01136_consen 72 L------EEIKEIAENSPGVPLEVIVHGNL 95 (233)
T ss_pred H------HHHHHHHHhCCCCeEEEEEeCCc
Confidence 4 4566677766 4677777665
No 196
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=24.08 E-value=3.2e+02 Score=25.86 Aligned_cols=71 Identities=20% Similarity=0.305 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHcC-cccEEEecCC---CHHHHHHHHHcCCCeeEeeeccccc-ccChhhHHHHHHHHhCCeEEEc
Q 022300 93 LDALNHLTDLKEEG-KIKTVALTNF---DTERLRIILENGIPVVSNQVQHSVV-DMRPQQKMAELCQLTGVKLITY 163 (299)
Q Consensus 93 ~~~~~~L~~l~~~G-kir~iGvs~~---~~~~l~~~~~~~~~~~~~q~~~n~~-~~~~~~~~~~~~~~~gi~v~~~ 163 (299)
..+++.+..|..+| .|.++.|.+. +.++++++++-....+.+|.--|-. .-.+-.++-+.|+++|+-+..=
T Consensus 102 ~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvD 177 (386)
T COG1104 102 PAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVD 177 (386)
T ss_pred HHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEe
Confidence 47888888887777 7888888754 4677777766433344444444422 1344567888899988666443
No 197
>TIGR00035 asp_race aspartate racemase.
Probab=24.00 E-value=4.6e+02 Score=22.38 Aligned_cols=63 Identities=10% Similarity=0.099 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCC-----------cHHHHHHHHHHHHHcCcccEEEecCCCHHH
Q 022300 57 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNP-----------GYLDALNHLTDLKEEGKIKTVALTNFDTER 120 (299)
Q Consensus 57 ~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~-----------~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~ 120 (299)
+.+++++=++..-.+.+-++++++.+++|+..+. ....+.+..+.|.+.| +..|-++-.+...
T Consensus 15 t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~ 88 (229)
T TIGR00035 15 TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHK 88 (229)
T ss_pred HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHH
Confidence 4577777777777789999999999999853211 1345677777776654 7888888665544
No 198
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=23.96 E-value=2.8e+02 Score=25.21 Aligned_cols=76 Identities=20% Similarity=0.198 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcCccc-EEEecCCCHHHHHHHHHcCCCeeEeeeccccccc-ChhhHHHHHHHHhCCeEEEcccccccc
Q 022300 94 DALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGGL 170 (299)
Q Consensus 94 ~~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~~~~pl~~G~ 170 (299)
+-++.+.+|++...+. +.|=|-++...+..++.. -..+++|+...-+-. ..-.++...|+.+|+.++..+.+..|+
T Consensus 210 ~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~-~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~es~i 287 (324)
T TIGR01928 210 DDLSMLDELAKGTITPICLDESITSLDDARNLIEL-GNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGMLETGI 287 (324)
T ss_pred hHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHc-CCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceEcccH
Confidence 3456777887775554 667778888999888875 346777777654321 123478999999999999876665553
No 199
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=23.75 E-value=7.4e+02 Score=24.70 Aligned_cols=92 Identities=10% Similarity=0.041 Sum_probs=60.2
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHcCCCeeE
Q 022300 54 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS 133 (299)
Q Consensus 54 ~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~ 133 (299)
.+++.+.+++.+++..+. -+|.+-+|.- -.++.++.++ + |-.|+.+-...-+.+.+...
T Consensus 290 ~~lt~e~~~d~ieeQAeq----GVDf~TIHaG--------v~~~~v~~~~--~--R~tgIVSRGGSima~Wml~h----- 348 (607)
T PRK09284 290 EDLTWEIFRDTLIEQAEQ----GVDYFTIHAG--------VLLRYVPLTA--K--RVTGIVSRGGSIMAKWCLAH----- 348 (607)
T ss_pred hhCCHHHHHHHHHHHHHh----CCCEEEEChh--------hHHHHHHHHh--C--cccCcccCCHHHHHHHHHHc-----
Confidence 467889999988887764 5788999962 2334444444 2 77888888887776665541
Q ss_pred eeecccccccChhhHHHHHHHHhCCeEEEccccccc
Q 022300 134 NQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGG 169 (299)
Q Consensus 134 ~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G 169 (299)
-.=|++.-.+ .++++.|+++++.+.----|-.|
T Consensus 349 --~kENplYe~F-D~ileI~k~YDVtlSLGDGLRPG 381 (607)
T PRK09284 349 --HKENFLYTHF-EEICEIMAAYDVSFSLGDGLRPG 381 (607)
T ss_pred --CCcCcHHHHH-HHHHHHHHHhCeeeeccCCcCCC
Confidence 1123332233 47999999999988544444334
No 200
>PRK09532 DNA polymerase III subunit alpha; Reviewed
Probab=23.66 E-value=1.4e+02 Score=31.43 Aligned_cols=135 Identities=13% Similarity=0.093 Sum_probs=69.3
Q ss_pred HHHHHHHHHHcCcccEEEec---CCCHHHHHHHHHcCCCeeEeeecccccccC-hhhHHHHHHHHhCCeE----------
Q 022300 95 ALNHLTDLKEEGKIKTVALT---NFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLTGVKL---------- 160 (299)
Q Consensus 95 ~~~~L~~l~~~Gkir~iGvs---~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~v---------- 160 (299)
.-+.|.++..+|..+.+|-. ....+..+.+ +.... .+.+..|.- +. .-.+++.+|+++||.|
T Consensus 299 ~~~~L~~l~~~Gl~~ry~~~~~~~~~~~y~~RL-e~EL~-vI~~~gf~~--YFLIV~D~v~~Ar~~gi~VGpGRGSAAGS 374 (874)
T PRK09532 299 PDTYVEEVAWQGLLERLNCKSRSEVEPVYKERL-EYELK-MLQQMGFST--YFLVVWDYIKYARDNNIPVGPGRGSAAGS 374 (874)
T ss_pred HHHHHHHHHHHhHHHHhcccCCCCCcHHHHHHH-HHHHH-HHHHCCCch--hHHHHHHHHHHHHhCCceecCCcccHHHH
Confidence 44578889999998888742 2222111111 11000 001111111 11 1246899999999766
Q ss_pred --------EEcccccccccCCcccCCCCCC------CCCCCCCCCchhHHHHhhhhhcCCchHHH-------HHHHHHHH
Q 022300 161 --------ITYGTVMGGLLSEKFLDTNLSI------PFAGPPLNTPSLQKYKRMVDAWGGWSQFQ-------VLLQTLKR 219 (299)
Q Consensus 161 --------~~~~pl~~G~L~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~ 219 (299)
..--|+..|+|..+|.+.++.. .|+..+. ..-..-..++|+.....+ ..-.++++
T Consensus 375 LVaY~LgIT~VDPl~~~LlFERFLnpeR~~mPDIDiDf~~~rR----~~Vi~Yv~ekYG~~~Va~I~Tf~T~~ak~aird 450 (874)
T PRK09532 375 LVAYCLKITNIDPVHHGLLFERFLNPERKSMPDIDTDFCIERR----DEMIKYVTEKYGEDRVAQIITFNRMTSKAVLKD 450 (874)
T ss_pred HHHHHhcCCccCccccCCcHhhccCCcCCCCCCceeecccccH----HHHHHHHHHHhCcccEEEEeehhhhHHHHHHHH
Confidence 3345777788888887764321 1222221 222222334555433211 22367889
Q ss_pred HHHHhCCCHHHHHHHHHHh
Q 022300 220 IASKHGVSIPVVAVRYILD 238 (299)
Q Consensus 220 la~~~~~s~aq~al~~~l~ 238 (299)
+|+-+|++..++ =+++-.
T Consensus 451 v~rvlg~~~~~~-~~i~k~ 468 (874)
T PRK09532 451 VARVLDIPYGEA-DKMAKL 468 (874)
T ss_pred HHHHhCCCHHHH-HHHHhc
Confidence 999999886553 344433
No 201
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=23.42 E-value=76 Score=21.39 Aligned_cols=17 Identities=47% Similarity=0.536 Sum_probs=14.9
Q ss_pred HHHHHHHHhCCCHHHHH
Q 022300 216 TLKRIASKHGVSIPVVA 232 (299)
Q Consensus 216 ~l~~la~~~~~s~aq~a 232 (299)
.+.+||+++|++..++.
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 58999999999998865
No 202
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=23.40 E-value=3.2e+02 Score=25.66 Aligned_cols=81 Identities=16% Similarity=0.139 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHcCCCeeEeeecccccccChh-hHHHHHHHHhC-CeEEEccccccc
Q 022300 92 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQ-QKMAELCQLTG-VKLITYGTVMGG 169 (299)
Q Consensus 92 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~g-i~v~~~~pl~~G 169 (299)
...+...++++....-|...=+...+.+.++++++...+..++..+=|+.-.-.+ ..+.+.|+++| +.++.=.+++.+
T Consensus 104 Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 104 YGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp SHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred cCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 4567777776555555554444455678888887765678888888888755443 45899999999 999988888776
Q ss_pred ccC
Q 022300 170 LLS 172 (299)
Q Consensus 170 ~L~ 172 (299)
.+.
T Consensus 184 ~~~ 186 (386)
T PF01053_consen 184 YNQ 186 (386)
T ss_dssp TTC
T ss_pred eee
Confidence 543
No 203
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=22.96 E-value=2.8e+02 Score=21.83 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecC
Q 022300 54 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN 115 (299)
Q Consensus 54 ~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~ 115 (299)
...+.+.+...+++.++.- -+.-.+=..|...+ +..+.+.|+.+++.| +..+|+.+
T Consensus 79 ~~v~~~~L~~~L~~~~~~~----~~~~V~I~aD~~~~-~~~vv~vmd~l~~aG-~~~v~l~t 134 (141)
T PRK11267 79 DPVTDETMITALDALTEGK----KDTTIFFRADKTVD-YETLMKVMDTLHQAG-YLKIGLVG 134 (141)
T ss_pred ccccHHHHHHHHHHHHhcC----CCceEEEEcCCCCC-HHHHHHHHHHHHHcC-CCeEEEEe
Confidence 3455666666666544421 23333334466777 899999999999999 55688764
No 204
>PRK11024 colicin uptake protein TolR; Provisional
Probab=22.90 E-value=2.6e+02 Score=22.03 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEec
Q 022300 56 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT 114 (299)
Q Consensus 56 ~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs 114 (299)
.+.+.+...+.+.++. .-|...+=..|...+ ++.+.+.|+.+++.| +..+++.
T Consensus 85 v~~~~L~~~l~~~~~~----~~~~~V~i~aD~~~~-~~~vv~vmd~~k~aG-~~~v~l~ 137 (141)
T PRK11024 85 LPEEQVVAEAKSRFKA----NPKTVFLIGGAKDVP-YDEIIKALNLLHSAG-VKSVGLM 137 (141)
T ss_pred cCHHHHHHHHHHHHhh----CCCceEEEEcCCCCC-HHHHHHHHHHHHHcC-CCeEEEE
Confidence 3555555555554432 234334444577777 899999999999998 4557765
No 205
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=22.78 E-value=5.3e+02 Score=22.70 Aligned_cols=107 Identities=13% Similarity=0.156 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHc-CcccEEEec--CCCHHHHHHHHHcCCCee
Q 022300 56 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE-GKIKTVALT--NFDTERLRIILENGIPVV 132 (299)
Q Consensus 56 ~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~-Gkir~iGvs--~~~~~~l~~~~~~~~~~~ 132 (299)
.+++.+.+.+++ ++..|...+-++..... +......+.++.+.+.+++ |. .+-++ ..+.+.++.+.++|....
T Consensus 62 ~~~eei~~~~~~-~~~~g~~~~~l~~~g~~-~~~~~~~~~~~~i~~~~~~~~i--~~~~~~g~~~~e~l~~Lk~aG~~~v 137 (296)
T TIGR00433 62 KKVDEVLEEARK-AKAAGATRFCLVASGRG-PKDREFMEYVEAMVQIVEEMGL--KTCATLGLLDPEQAKRLKDAGLDYY 137 (296)
T ss_pred CCHHHHHHHHHH-HHHCCCCEEEEEEecCC-CChHHHHHHHHHHHHHHHhCCC--eEEecCCCCCHHHHHHHHHcCCCEE
Confidence 356677777765 45567655544432221 1111124455555555444 32 22223 346777777777654433
Q ss_pred Eeeecccc-----ccc--Chh--hHHHHHHHHhCCeEEEcccc
Q 022300 133 SNQVQHSV-----VDM--RPQ--QKMAELCQLTGVKLITYGTV 166 (299)
Q Consensus 133 ~~q~~~n~-----~~~--~~~--~~~~~~~~~~gi~v~~~~pl 166 (299)
.+-++.|. +.+ ..+ .+.++.+++.|+.+.+.-.+
T Consensus 138 ~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~ 180 (296)
T TIGR00433 138 NHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIF 180 (296)
T ss_pred EEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEE
Confidence 33233221 111 111 24577888888887664433
No 206
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=22.76 E-value=2.5e+02 Score=26.45 Aligned_cols=73 Identities=12% Similarity=0.137 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCccc-EEEecCCCHHHHHHHHHcCCCeeEeeeccccccc-ChhhHHHHHHHHhCCeEEEccccccc
Q 022300 96 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 169 (299)
Q Consensus 96 ~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~~~~pl~~G 169 (299)
++.+.+|++...+. +.|-|-++.++++.+++.+ .++++|......-. ..-.++.+.|+++|+.++.++....|
T Consensus 250 ~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~-avdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~e~~ 324 (395)
T cd03323 250 REGMAEFRRATGLPLATNMIVTDFRQLGHAIQLN-AVDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNNHLG 324 (395)
T ss_pred HHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcC-CCcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCcccH
Confidence 45666677765554 5566666777888887763 47777777654221 12357899999999999987765333
No 207
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=22.71 E-value=2.7e+02 Score=21.80 Aligned_cols=63 Identities=10% Similarity=-0.006 Sum_probs=39.3
Q ss_pred CCcEEEEec-ccCCCCCCCHHHHHHHHHHHHhhcC--CCcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 022300 40 QSSWISLTK-WVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 105 (299)
Q Consensus 40 R~~i~I~tK-~~~~~~~~~~~~i~~~ve~SL~~Lg--~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~ 105 (299)
|=.+.|+-| ++.. .....+++.+.++.+... ..-.|++++..+.....+..++.+.|..|.+.
T Consensus 47 RiG~~VsKK~~g~A---V~RNRiKR~lRE~fR~~~~~l~g~DiVviaR~~~~~~~~~~l~~~l~~ll~k 112 (130)
T PRK00396 47 RLGLVIGKKSVKLA---VDRNRLKRLIRESFRLNQHSLAGWDIVVVARKGLGELENPELHQQFGKLWKR 112 (130)
T ss_pred cEEEEEecccCccH---hHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 445666666 4442 234555555555555432 24689999999876666577777777776554
No 208
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=22.58 E-value=6.1e+02 Score=23.35 Aligned_cols=74 Identities=12% Similarity=0.022 Sum_probs=58.5
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHc
Q 022300 53 PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN 127 (299)
Q Consensus 53 ~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~ 127 (299)
..+++.+...+-.+-+.+-.+++.|=|=.+.......++..+++++-+.|+++|..-.+ +++-++...+++.+.
T Consensus 144 ag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~-yc~~d~~~a~~l~~~ 217 (326)
T PRK11840 144 AGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMV-YCSDDPIAAKRLEDA 217 (326)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEE-EeCCCHHHHHHHHhc
Confidence 45778999999999999999999999888887766667789999999999999986533 444566666666554
No 209
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=22.56 E-value=1.1e+02 Score=29.62 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=22.3
Q ss_pred HHHhCCCHHHHHHHHHHhCC-CCceeeec
Q 022300 221 ASKHGVSIPVVAVRYILDQP-AVAGSMIG 248 (299)
Q Consensus 221 a~~~~~s~aq~al~~~l~~~-~v~~~i~g 248 (299)
|.-+|+|..--.|+|++..- --++.++|
T Consensus 113 aGTHGKTTTTsmla~vl~~~gldPtf~iG 141 (459)
T COG0773 113 AGTHGKTTTTSMLAWVLEAAGLDPTFLIG 141 (459)
T ss_pred eCCCCchhHHHHHHHHHHhCCCCCEEEEC
Confidence 44688999999999999987 45566777
No 210
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=22.49 E-value=5.6e+02 Score=22.93 Aligned_cols=69 Identities=9% Similarity=0.075 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCcccEEEecCCCHHHHHHHHHc--CCCeeEeeecccccccChhhHHHHHHHHhCCeEEEccccccc
Q 022300 96 LNHLTDLKEEGKIKTVALTNFDTERLRIILEN--GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGG 169 (299)
Q Consensus 96 ~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~--~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~pl~~G 169 (299)
++...++.+.| +..|-+-|++++++.++.+. ...+.+ .+..+ .....+-+....+.|+.+++-+.+..+
T Consensus 198 leea~ea~~~G-aDiI~lDn~~~e~l~~~v~~l~~~~~~~-~leas---GGI~~~ni~~ya~~GvD~is~gal~~a 268 (277)
T TIGR01334 198 IEQALTVLQAS-PDILQLDKFTPQQLHHLHERLKFFDHIP-TLAAA---GGINPENIADYIEAGIDLFITSAPYYA 268 (277)
T ss_pred HHHHHHHHHcC-cCEEEECCCCHHHHHHHHHHHhccCCCE-EEEEE---CCCCHHHHHHHHhcCCCEEEeCcceec
Confidence 33444445555 78889999999999888775 111111 11111 111223456667788998887766443
No 211
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=22.42 E-value=1.6e+02 Score=18.36 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=25.3
Q ss_pred CHHHHHHhHhhhcCC-CCHHHHHHHHHHHhcCC
Q 022300 253 LAEHIQDTNAIFMLS-LDEDDVNSIQEVTKKGK 284 (299)
Q Consensus 253 ~~e~l~enl~a~~~~-Lt~e~~~~i~~~~~~~~ 284 (299)
+.+++...+..++.. ++++++..|-..+..+.
T Consensus 6 ~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~ 38 (54)
T PF13833_consen 6 TREEFRRALSKLGIKDLSEEEVDRLFREFDTDG 38 (54)
T ss_dssp EHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCC
Confidence 678889999777777 99999888877765543
No 212
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=22.38 E-value=5e+02 Score=27.44 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHhhcCC--------------------------CcccEEEEecCCCCCCc--HHHHHHHHHHHHHcC
Q 022300 55 KMTSSIVRESIDVSRRRMDV--------------------------PCLDMLQFHWWDYSNPG--YLDALNHLTDLKEEG 106 (299)
Q Consensus 55 ~~~~~~i~~~ve~SL~~Lg~--------------------------d~iDl~~lH~pd~~~~~--~~~~~~~L~~l~~~G 106 (299)
+....++.+.++.+|+.+|. ....+++|..|....+. ...+|....++++.|
T Consensus 669 G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 669 GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748 (885)
T ss_pred CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 45667899999999998763 23567788887655442 357999999999999
Q ss_pred cccEEEecCCCHHHHHHHHHc
Q 022300 107 KIKTVALTNFDTERLRIILEN 127 (299)
Q Consensus 107 kir~iGvs~~~~~~l~~~~~~ 127 (299)
+ ++=+.+|+-++.+.+...
T Consensus 749 ~--aiiLTSHsMeE~EaLCtR 767 (885)
T KOG0059|consen 749 K--AIILTSHSMEEAEALCTR 767 (885)
T ss_pred C--EEEEEcCCHHHHHHHhhh
Confidence 9 888999999999988775
No 213
>PHA02128 hypothetical protein
Probab=22.36 E-value=3.5e+02 Score=20.49 Aligned_cols=72 Identities=8% Similarity=0.175 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHc-----------------CCCeeEe---eecccccccChhhHHHH
Q 022300 92 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-----------------GIPVVSN---QVQHSVVDMRPQQKMAE 151 (299)
Q Consensus 92 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-----------------~~~~~~~---q~~~n~~~~~~~~~~~~ 151 (299)
..+++.--.++.++|-+|-|-...-+....+.+... ...+.+. ..+|.+-.+....++.+
T Consensus 59 t~gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiyd 138 (151)
T PHA02128 59 TTGLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYD 138 (151)
T ss_pred cchHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHh
Confidence 346777888999999999998876665555444332 1222223 44666666665668999
Q ss_pred HHHHhCCeEEEc
Q 022300 152 LCQLTGVKLITY 163 (299)
Q Consensus 152 ~~~~~gi~v~~~ 163 (299)
+|..+|+.++.+
T Consensus 139 wagthgvefvim 150 (151)
T PHA02128 139 WAGTHGVEFVIM 150 (151)
T ss_pred hcccCceEEEEe
Confidence 999999998875
No 214
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=22.27 E-value=2.1e+02 Score=22.11 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHhCCCCceeeeccCCCCHHHHHHhHhhh
Q 022300 226 VSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF 264 (299)
Q Consensus 226 ~s~aq~al~~~l~~~~v~~~i~g~~~~~~e~l~enl~a~ 264 (299)
.|-.+.||.++...+.-..++.|+.-.+.+|.-.|+..+
T Consensus 70 ~TD~e~Al~~~~~~~~~~i~v~Ga~GgR~DH~lanl~~l 108 (123)
T PF04263_consen 70 YTDLEKALEYAIEQGPDEIIVLGALGGRFDHTLANLNLL 108 (123)
T ss_dssp S-HHHHHHHHHHHTTTSEEEEES-SSSSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHCCCCEEEEEecCCCcHHHHHHHHHHH
Confidence 477889999999998888888999988999998888765
No 215
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.12 E-value=6.2e+02 Score=23.24 Aligned_cols=77 Identities=16% Similarity=0.214 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHc-Cc---ccEEEec--CCCHHHHHHHHHc--CCCeeEeeecccccccC---hh----hHHHHHHHHh
Q 022300 92 YLDALNHLTDLKEE-GK---IKTVALT--NFDTERLRIILEN--GIPVVSNQVQHSVVDMR---PQ----QKMAELCQLT 156 (299)
Q Consensus 92 ~~~~~~~L~~l~~~-Gk---ir~iGvs--~~~~~~l~~~~~~--~~~~~~~q~~~n~~~~~---~~----~~~~~~~~~~ 156 (299)
++++++++.++.+. |. ++++-+. |.+.+.+.++.+. +....++-++||+.... +. ..+.+..+++
T Consensus 234 l~~Il~~l~~~~~~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~~~~~VnLIpynp~~~~~~~ps~e~l~~f~~~l~~~ 313 (343)
T PRK14469 234 IEEIINAVKIYQKKTGNRVTIEYILIKGFNDEIEDAKKLAELLKGLKVFVNLIPVNPTVPGLEKPSRERIERFKEILLKN 313 (343)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhccCcEEEEEecCCCCccCCCCCHHHHHHHHHHHHHC
Confidence 67899999887765 32 3444444 6667777777665 45567888899986422 11 2356677778
Q ss_pred CCeEEEcccccc
Q 022300 157 GVKLITYGTVMG 168 (299)
Q Consensus 157 gi~v~~~~pl~~ 168 (299)
|+.+..+...+.
T Consensus 314 gi~vtvr~~~g~ 325 (343)
T PRK14469 314 GIEAEIRREKGS 325 (343)
T ss_pred CCeEEEeCCCCc
Confidence 999988765544
No 216
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=22.00 E-value=2.7e+02 Score=25.71 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHhCCC--HHHHHHHHHHhCCCCceeeeccCCCCHHHHHHhHhhhcCCCCHH-HHHHHHHHHh
Q 022300 209 QFQVLLQTLKRIASKHGVS--IPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDED-DVNSIQEVTK 281 (299)
Q Consensus 209 ~~~~~~~~l~~la~~~~~s--~aq~al~~~l~~~~v~~~i~g~~~~~~e~l~enl~a~~~~Lt~e-~~~~i~~~~~ 281 (299)
.+..+...+..++++|++. .++.+..|.+..+.-..-+.+.. + .....+.|.+ +.+.|.++.+
T Consensus 213 ~l~~l~~~l~~l~~ry~K~V~V~Et~yp~t~~d~D~~~n~~~~~--~--------~~~~yp~t~~GQ~~~l~~l~~ 278 (332)
T PF07745_consen 213 TLEDLKNNLNDLASRYGKPVMVVETGYPWTLDDGDGTGNIIGAT--S--------LISGYPATPQGQADFLRDLIN 278 (332)
T ss_dssp -HHHHHHHHHHHHHHHT-EEEEEEE---SBS--SSSS--SSSSS--T--------GGTTS-SSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCeeEEEeccccccccccccccccCccc--c--------ccCCCCCCHHHHHHHHHHHHH
Confidence 4667778899999999874 47777777766655444444444 2 2334566664 3333444443
No 217
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=21.89 E-value=1.4e+02 Score=27.07 Aligned_cols=47 Identities=15% Similarity=0.069 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcc
Q 022300 58 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI 108 (299)
Q Consensus 58 ~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gki 108 (299)
.+...+.+.+.+++||++ +|.+.-.. +......+.+.+++|+++|.+
T Consensus 68 ~~~~~~~~~~~l~~LgI~-~D~~~~tt---~~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 68 CDKYHEIFKDLFKWLNIS-FDYFIRTT---SPRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHHcCCc-CCCCeeCC---CHHHHHHHHHHHHHHHHCCCE
Confidence 356677889999999995 68643321 111245788999999999998
No 218
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=21.88 E-value=6.1e+02 Score=23.06 Aligned_cols=86 Identities=9% Similarity=0.137 Sum_probs=56.8
Q ss_pred CCCcEEEEecccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCH
Q 022300 39 HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT 118 (299)
Q Consensus 39 ~R~~i~I~tK~~~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~ 118 (299)
.++.|.++.|....+. ...+.+.+++..+.+|. ++.+ ..+. ..+ .+...+.++.+..+| +..|-++..+.
T Consensus 22 ~~~~i~~v~k~~~~pf---~~~~~~Gi~~aa~~~G~---~v~~-~~~~-~~d-~~~q~~~i~~li~~~-vdgIiv~~~d~ 91 (336)
T PRK15408 22 AAERIAFIPKLVGVGF---FTSGGNGAKEAGKELGV---DVTY-DGPT-EPS-VSGQVQLINNFVNQG-YNAIIVSAVSP 91 (336)
T ss_pred CCcEEEEEECCCCCHH---HHHHHHHHHHHHHHhCC---EEEE-ECCC-CCC-HHHHHHHHHHHHHcC-CCEEEEecCCH
Confidence 3668888888754322 46788899999999984 4443 2332 222 456678888888875 88888887664
Q ss_pred H----HHHHHHHcCCCeeEe
Q 022300 119 E----RLRIILENGIPVVSN 134 (299)
Q Consensus 119 ~----~l~~~~~~~~~~~~~ 134 (299)
. .+.++.+.++++..+
T Consensus 92 ~al~~~l~~a~~~gIpVV~~ 111 (336)
T PRK15408 92 DGLCPALKRAMQRGVKVLTW 111 (336)
T ss_pred HHHHHHHHHHHHCCCeEEEe
Confidence 4 455555556665544
No 219
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=21.81 E-value=3.3e+02 Score=19.97 Aligned_cols=45 Identities=22% Similarity=0.408 Sum_probs=29.1
Q ss_pred CCCcHHHHHHHHHHHH---HcCcccEEEecCCCHHHHHHHHHc-CCCee
Q 022300 88 SNPGYLDALNHLTDLK---EEGKIKTVALTNFDTERLRIILEN-GIPVV 132 (299)
Q Consensus 88 ~~~~~~~~~~~L~~l~---~~Gkir~iGvs~~~~~~l~~~~~~-~~~~~ 132 (299)
.++.-...+..|.++. ++..+..|||+.-+.+.+.+..+. +.++.
T Consensus 37 ~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~ 85 (124)
T PF00578_consen 37 WCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFP 85 (124)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSE
T ss_pred CccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccc
Confidence 4442334555555555 344689999999999988888776 44333
No 220
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=21.78 E-value=4.4e+02 Score=25.18 Aligned_cols=109 Identities=14% Similarity=0.045 Sum_probs=62.3
Q ss_pred cCCCCCCCCcceeeccccccCCCccHHHhhhcC-CCcEEEE-ecccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEec
Q 022300 7 PMPVSPPSTWPITMGLLKISMASSSIEFVERGH-QSSWISL-TKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHW 84 (299)
Q Consensus 7 ~~~~~~~~~~~~~~g~~~~~~ag~sE~~lg~~~-R~~i~I~-tK~~~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~ 84 (299)
|+|-+....+++++=.+.. +.+++.+ +.+++|. |-..+ -+-+.+..-+.+....|... -|+|+-|+
T Consensus 93 PTPl~~~~~pDls~v~~aa-------~sIa~~L~kG~LVIlEST~~P----GTTe~v~~plle~~sgL~~~-~Df~lays 160 (436)
T COG0677 93 PTPLKKYREPDLSYVESAA-------RSIAPVLKKGDLVILESTTPP----GTTEEVVKPLLEERSGLKFG-EDFYLAYS 160 (436)
T ss_pred cCCcCCCCCCChHHHHHHH-------HHHHHhcCCCCEEEEecCCCC----CcHHHHHHHHHhhcCCCccc-ceeeEeeC
Confidence 6666666666666554443 4555654 5566653 33323 24466666666655556653 89999999
Q ss_pred CCCCCCc----------------HHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHc
Q 022300 85 WDYSNPG----------------YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN 127 (299)
Q Consensus 85 pd~~~~~----------------~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~ 127 (299)
|....+. .++..+....|.+.=--+-+=+++-..+++.+++++
T Consensus 161 PERv~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN 219 (436)
T COG0677 161 PERVLPGNVLKELVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTEN 219 (436)
T ss_pred ccccCCCchhhhhhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhh
Confidence 9644442 123344444444442222566777777777777775
No 221
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=21.58 E-value=1.9e+02 Score=28.56 Aligned_cols=59 Identities=15% Similarity=0.099 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHH
Q 022300 57 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRII 124 (299)
Q Consensus 57 ~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~ 124 (299)
......+++.+.|+.||.++ |- +..+...++.-.++.++|.++|++ |. |.-+.+++++.
T Consensus 58 ~~~e~~~~I~~dL~WLGl~w-D~-----~~~qSdr~~~y~~~a~~Li~~G~A-Y~--C~cs~eel~~~ 116 (523)
T PLN03233 58 EKAEFEESIIEDLGKIEIKP-DS-----VSFTSDYFEPIRCYAIILIEEGLA-YM--DDTPQEEMKKE 116 (523)
T ss_pred cchHHHHHHHHHHHHhCCCC-CC-----CccccccHHHHHHHHHHHHHcCCe-Ee--cCCCHHHHHHH
Confidence 45677889999999999986 52 223444478889999999999985 22 34456666544
No 222
>PF06819 Arc_PepC: Archaeal Peptidase A24 C-terminal Domain; InterPro: IPR009639 This region is of unknown function found at the C terminus of some archael proteins that have multiple transmembrane domains and are predicted to be aspartic peptidases belonging to the MEROPS peptidase subfamily A24A (type 4 prepilin peptidase 1.
Probab=21.51 E-value=2e+02 Score=21.99 Aligned_cols=52 Identities=21% Similarity=0.164 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCccc
Q 022300 57 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK 109 (299)
Q Consensus 57 ~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir 109 (299)
+...+...+.+.++.-....+---.+-.++.... .++..+.|.+|+++||+.
T Consensus 54 d~~~~~~r~k~~l~~~~~~~l~g~~i~~~~~EGL-s~E~IE~Lk~Lv~eGKi~ 105 (110)
T PF06819_consen 54 DRSSFFKRFKFALKTEDGSALTGEKIISTDAEGL-SKEDIEKLKKLVEEGKIE 105 (110)
T ss_pred ecccHHHHHHHHHHhcccccccCCeEEeccccCC-CHHHHHHHHHHHHcCCCc
Confidence 4466667777777766555542234445565656 678999999999999985
No 223
>PLN02907 glutamate-tRNA ligase
Probab=21.34 E-value=3.3e+02 Score=28.11 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHH
Q 022300 57 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 125 (299)
Q Consensus 57 ~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~ 125 (299)
......+++.+.|+.||.++ |-. ..+.+.++...+..++|+++|++= ++.-+.+++++..
T Consensus 260 ~~~e~~~~I~~dl~wLG~~~-d~~-----~~qS~r~~~y~~~a~~Li~~G~aY---~~~~~~~~~~~~~ 319 (722)
T PLN02907 260 ESDEFVENILKDIETLGIKY-DAV-----TYTSDYFPQLMEMAEKLIKEGKAY---VDDTPREQMRKER 319 (722)
T ss_pred CChHHHHHHHHHHHHcCCCC-CCc-----ccccccHHHHHHHHHHHHHcCCee---ecCCCHHHHHHHH
Confidence 34677889999999999987 521 234444788899999999999953 3556677776654
No 224
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=21.24 E-value=3.4e+02 Score=22.15 Aligned_cols=95 Identities=22% Similarity=0.255 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhcCCCcc----cEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHc-CC--CeeE
Q 022300 61 VRESIDVSRRRMDVPCL----DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GI--PVVS 133 (299)
Q Consensus 61 i~~~ve~SL~~Lg~d~i----Dl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~--~~~~ 133 (299)
.+..++..++.+|.+.- +.+.-.. ..... ..++.+.|+.|++.| ++-.-+||.+...+...++. ++ .|+.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~-~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~ 137 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAY-LRLPP-HPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKHAGLDDPFDA 137 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH-hcCCC-CCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHHCCChhhhhe
Confidence 35667777777776521 1111111 11112 467888999999988 44455777777777776665 43 2443
Q ss_pred eeecccccccChhhH-HHHHHHHhCC
Q 022300 134 NQVQHSVVDMRPQQK-MAELCQLTGV 158 (299)
Q Consensus 134 ~q~~~n~~~~~~~~~-~~~~~~~~gi 158 (299)
+-..-.+-...|..+ +...+++.|+
T Consensus 138 i~~s~~~~~~KP~~~~~~~~~~~~~~ 163 (198)
T TIGR01428 138 VLSADAVRAYKPAPQVYQLALEALGV 163 (198)
T ss_pred eEehhhcCCCCCCHHHHHHHHHHhCC
Confidence 332222222333334 4445555564
No 225
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=21.18 E-value=5.5e+02 Score=22.27 Aligned_cols=104 Identities=12% Similarity=0.227 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhhcCCCcccEEEEecCCCCC--CcHHHHHHHHHHHHHcCc-ccEEEecCC------CHHHHHHHHHc-
Q 022300 58 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN--PGYLDALNHLTDLKEEGK-IKTVALTNF------DTERLRIILEN- 127 (299)
Q Consensus 58 ~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~--~~~~~~~~~L~~l~~~Gk-ir~iGvs~~------~~~~l~~~~~~- 127 (299)
++.+..+++...+.- - ..-| +++...... ......++.+++|++.|. |..||+-.| +...+...++.
T Consensus 102 ~~~i~~af~~ar~~~-P-~a~l-~~Ndy~~~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~ 178 (254)
T smart00633 102 EDYIEKAFRYAREAD-P-DAKL-FYNDYNTEEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRF 178 (254)
T ss_pred hHHHHHHHHHHHHhC-C-CCEE-EEeccCCcCccHHHHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHH
Confidence 466666666554432 1 2222 334222111 123467899999999988 999998655 45666665554
Q ss_pred ---CCCeeEeeeccccccc-C----hhhHHHHHHHHhC--CeEEEcc
Q 022300 128 ---GIPVVSNQVQHSVVDM-R----PQQKMAELCQLTG--VKLITYG 164 (299)
Q Consensus 128 ---~~~~~~~q~~~n~~~~-~----~~~~~~~~~~~~g--i~v~~~~ 164 (299)
+.++.+..+.+..... . .-..+++.|.++. .+|+-|+
T Consensus 179 ~~~g~pi~iTE~dv~~~~~~~~qA~~~~~~l~~~~~~p~v~gi~~Wg 225 (254)
T smart00633 179 ASLGLEIQITELDISGYPNPQAQAADYEEVFKACLAHPAVTGVTVWG 225 (254)
T ss_pred HHcCCceEEEEeecCCCCcHHHHHHHHHHHHHHHHcCCCeeEEEEeC
Confidence 5555555555543211 0 1245788888775 6666663
No 226
>smart00657 RPOL4c DNA-directed RNA-polymerase II subunit.
Probab=21.06 E-value=3.8e+02 Score=20.41 Aligned_cols=59 Identities=10% Similarity=0.036 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCCceeeeccCCCCHHHHHHhHhhhcCCCCHHHHHHHHHHHhcCC
Q 022300 214 LQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGK 284 (299)
Q Consensus 214 ~~~l~~la~~~~~s~aq~al~~~l~~~~v~~~i~g~~~~~~e~l~enl~a~~~~Lt~e~~~~i~~~~~~~~ 284 (299)
...+.+...+++.+.+++|.--. ..++ +++++...+...+.++++++++.|-+.....+
T Consensus 57 i~~~~~~L~~~~L~k~E~~~i~N----------l~P~--s~~E~~~lI~sl~~r~~ee~l~~iL~~i~~~~ 115 (118)
T smart00657 57 VRAVRTLLKSKKLHKFEIAQLGN----------LRPE--TAEEAQLLIPSLEERIDEEELEELLDDLSSLL 115 (118)
T ss_pred HHHHHHHHHhcCCCHHHHHHHhC----------CCCC--CHHHHHHHhhhhhccCCHHHHHHHHHHHHHhc
Confidence 44555555667888877664211 1245 99999999999888899999999987776654
No 227
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=21.04 E-value=3.7e+02 Score=23.07 Aligned_cols=66 Identities=15% Similarity=0.121 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHcCcccEEEecCCCHHHHHHHHHc-C---CCeeEeeecccccccChhhH-HHHHHHHhCC
Q 022300 92 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-G---IPVVSNQVQHSVVDMRPQQK-MAELCQLTGV 158 (299)
Q Consensus 92 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~---~~~~~~q~~~n~~~~~~~~~-~~~~~~~~gi 158 (299)
++++.+.|+.|++.|.--.| +||.+...+...++. + ..++.+-..-......|..+ +...+++.|+
T Consensus 101 ~pg~~e~L~~L~~~g~~l~I-vT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~ 171 (253)
T TIGR01422 101 IPGVIEVIAYLRARGIKIGS-TTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGV 171 (253)
T ss_pred CCCHHHHHHHHHHCCCeEEE-ECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCC
Confidence 45788889999999854444 667777777666554 2 21244433333222233323 4555555554
No 228
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.98 E-value=7.5e+02 Score=23.74 Aligned_cols=15 Identities=7% Similarity=0.014 Sum_probs=9.2
Q ss_pred CCHHHHHHHHHHHHh
Q 022300 56 MTSSIVRESIDVSRR 70 (299)
Q Consensus 56 ~~~~~i~~~ve~SL~ 70 (299)
.+++.|.+.++...+
T Consensus 183 r~~e~Iv~Ei~~l~~ 197 (449)
T PRK14332 183 RDPKSIVREIQDLQE 197 (449)
T ss_pred CCHHHHHHHHHHHHH
Confidence 356777777766543
No 229
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=20.91 E-value=8e+02 Score=24.05 Aligned_cols=85 Identities=11% Similarity=0.112 Sum_probs=45.6
Q ss_pred CCcEEEEecccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHH----------------
Q 022300 40 QSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLK---------------- 103 (299)
Q Consensus 40 R~~i~I~tK~~~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~---------------- 103 (299)
-+=|+|.|-+.+.--+.+.+.+.+.++ +++ -++++.+|.|.+........-.+++.++
T Consensus 86 P~~I~V~tTC~~eiIGDDi~~v~~~~~---~~~---~~pVi~v~t~~f~g~~~~g~~~~l~~lv~~~~~~~~~~~~~~~~ 159 (513)
T CHL00076 86 PDLIVLTPTCTSSILQEDLQNFVDRAS---IES---DSDVILADVNHYRVNELQAADRTLEQIVRFYLEKARKQGTLDQS 159 (513)
T ss_pred CCEEEECCCCchhhhhcCHHHHHHHhh---ccc---CCCEEEeCCCCCcccHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 456666766644322334444444443 222 3689999999776543322222333333
Q ss_pred --HcCcccEEEecC------CCHHHHHHHHHc-CCC
Q 022300 104 --EEGKIKTVALTN------FDTERLRIILEN-GIP 130 (299)
Q Consensus 104 --~~Gkir~iGvs~------~~~~~l~~~~~~-~~~ 130 (299)
..++|.=||.++ .+...++.+++. |+.
T Consensus 160 ~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~ 195 (513)
T CHL00076 160 KTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIE 195 (513)
T ss_pred CCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCe
Confidence 235688888663 244566666664 443
No 230
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=20.78 E-value=1.7e+02 Score=26.73 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=23.0
Q ss_pred HHHHHcCCCeeEeeecccccccCh----------hhHHHHHHHHhCCeEEEc
Q 022300 122 RIILENGIPVVSNQVQHSVVDMRP----------QQKMAELCQLTGVKLITY 163 (299)
Q Consensus 122 ~~~~~~~~~~~~~q~~~n~~~~~~----------~~~~~~~~~~~gi~v~~~ 163 (299)
+++.+.|.......+.+|.....+ ...+++.|+++|+-|+.+
T Consensus 31 ~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilr 82 (319)
T PF01301_consen 31 QKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILR 82 (319)
T ss_dssp HHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEE
T ss_pred HHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEec
Confidence 333333444555555555544322 246899999999988874
No 231
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=20.71 E-value=2.4e+02 Score=21.94 Aligned_cols=51 Identities=14% Similarity=0.091 Sum_probs=33.4
Q ss_pred CHHHHHHHHHcCCCeeEeeecccccccChhhHHHHHHHHhCCeEEEccccc
Q 022300 117 DTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVM 167 (299)
Q Consensus 117 ~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~pl~ 167 (299)
+++.+..+++....+.++-+.-..-.+.+...+...+++.||++-.|+.=+
T Consensus 56 t~e~f~~vl~~a~~~EilliGTG~~~rf~p~~l~aal~~~gIsve~Mst~A 106 (127)
T COG3737 56 TPEDFERVLAEAPDVEILLIGTGARLRFPPPKLRAALKAAGISVEPMSTGA 106 (127)
T ss_pred CHHHHHHHHhcCCCceEEEEecCccccCCCHHHHHHHHHcCCccccccchh
Confidence 355566665543344555555544445556689999999999998886543
No 232
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=20.58 E-value=3.9e+02 Score=29.01 Aligned_cols=77 Identities=17% Similarity=0.129 Sum_probs=58.9
Q ss_pred CCCcEEEEecccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCcccEEEecCCCH
Q 022300 39 HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT 118 (299)
Q Consensus 39 ~R~~i~I~tK~~~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~ 118 (299)
+-++.=|-|=+. .+++..|++++.+=|.|=|- +|++|+ ....+++.-+.|.+|+-+-+| .|+-+-++.
T Consensus 774 P~~R~pV~T~V~----~~d~~~ireAI~REl~RgGQ----vfYv~N---rV~~Ie~~~~~L~~LVPEarI-~vaHGQM~e 841 (1139)
T COG1197 774 PEDRLPVKTFVS----EYDDLLIREAILRELLRGGQ----VFYVHN---RVESIEKKAERLRELVPEARI-AVAHGQMRE 841 (1139)
T ss_pred CCCCcceEEEEe----cCChHHHHHHHHHHHhcCCE----EEEEec---chhhHHHHHHHHHHhCCceEE-EEeecCCCH
Confidence 445566666663 36899999999998888774 899998 444488999999999999774 355567788
Q ss_pred HHHHHHHHc
Q 022300 119 ERLRIILEN 127 (299)
Q Consensus 119 ~~l~~~~~~ 127 (299)
.+++..+..
T Consensus 842 ~eLE~vM~~ 850 (1139)
T COG1197 842 RELEEVMLD 850 (1139)
T ss_pred HHHHHHHHH
Confidence 888887764
No 233
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=20.55 E-value=4.8e+02 Score=25.19 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=45.0
Q ss_pred HHHHHHHcCcccEEEecCCCHHHHHHHHHc------CCC-eeEeeecccccccChhhHHHHHHHHhCCeEEEccc
Q 022300 98 HLTDLKEEGKIKTVALTNFDTERLRIILEN------GIP-VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 165 (299)
Q Consensus 98 ~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~------~~~-~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~p 165 (299)
-...+-+.|-...+|....+++++++.+.. +.+ |-+|-+ .+.-+...+..+++.+.++|+.++..+.
T Consensus 35 LVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~~~~~~e~~~v~l~l~~~V~~veasa 108 (444)
T TIGR02814 35 LVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSPSDPALEWGLVDLLLRHGVRIVEASA 108 (444)
T ss_pred HHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccCCCcccHHHHHHHHHHcCCCEEEecc
Confidence 334556789999999999999998777664 113 555543 2322222345688999999999876543
No 234
>PF12478 DUF3697: Ubiquitin-associated protein 2 ; InterPro: IPR022166 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00627 from PFAM. There are two conserved sequence motifs: AVEMPG and QFG.
Probab=20.51 E-value=80 Score=18.41 Aligned_cols=21 Identities=29% Similarity=0.397 Sum_probs=15.7
Q ss_pred cCCCCC-CCCcceeeccccccC
Q 022300 7 PMPVSP-PSTWPITMGLLKISM 27 (299)
Q Consensus 7 ~~~~~~-~~~~~~~~g~~~~~~ 27 (299)
-||.+. -+.+++.||.+.|+.
T Consensus 11 EMPgs~~i~~LdvQFGal~fGs 32 (33)
T PF12478_consen 11 EMPGSADISSLDVQFGALDFGS 32 (33)
T ss_pred ecCCCCCcCceeEEeccccccC
Confidence 377666 566789999988864
No 235
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=20.35 E-value=1.3e+02 Score=27.58 Aligned_cols=47 Identities=11% Similarity=-0.060 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhcCC--CcccEEEEecCCCCCCcHHHHHHHHHHHHHcCccc
Q 022300 59 SIVRESIDVSRRRMDV--PCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK 109 (299)
Q Consensus 59 ~~i~~~ve~SL~~Lg~--d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~Gkir 109 (299)
+...+.+.+.+++||+ |+-..+.-+.+ ...+.+.+.+.+|.++|.|-
T Consensus 87 ~~~~~~~~~~~~~lgi~~~~~~~~~T~~~----~~~~~v~~~f~~L~~~G~iY 135 (338)
T cd00818 87 LRYVDEQEEQFQRLGVWVDWENPYKTMDP----EYMESVWWVFKQLHEKGLLY 135 (338)
T ss_pred HHHHHHHHHHHHHhCceecCCCCeECCCH----HHHHHHHHHHHHHHHCCCEe
Confidence 3456777788999998 54444433322 22578999999999999986
No 236
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=20.27 E-value=2.1e+02 Score=22.14 Aligned_cols=43 Identities=19% Similarity=0.141 Sum_probs=18.0
Q ss_pred HHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcC
Q 022300 64 SIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG 106 (299)
Q Consensus 64 ~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~G 106 (299)
.+.+.|+.+...-+|.+++...+.-.....+....+..|.+.|
T Consensus 53 ~l~~ll~~~~~g~~~~ivv~~~~Rl~R~~~~~~~~~~~l~~~g 95 (148)
T smart00857 53 GLQRLLADLRAGDIDVLVVYKLDRLGRSLRDLLALLELLEKKG 95 (148)
T ss_pred HHHHHHHHHHcCCCCEEEEeccchhhCcHHHHHHHHHHHHHCC
Confidence 3333344443334455555544433332334444444444443
No 237
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=20.24 E-value=5e+02 Score=26.29 Aligned_cols=44 Identities=11% Similarity=0.131 Sum_probs=34.6
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHHhCCCCceeeeccCCCCHHHHHHhH
Q 022300 215 QTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTN 261 (299)
Q Consensus 215 ~~l~~la~~~~~------s~aq~al~~~l~~~~v~~~i~g~~~~~~e~l~enl 261 (299)
..|.++|++.|. ++.++.-.|+-.... ..+..|+| +|+.|-+.+
T Consensus 222 ~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~-vgitagaS--tP~~~i~~v 271 (647)
T PRK00087 222 TKLYEICKSNCTNTIHIENAGELPEEWFKGVKI-IGVTAGAS--TPDWIIEEV 271 (647)
T ss_pred HHHHHHHHHHCCCEEEECChHHCCHHHhCCCCE-EEEEeccC--CCHHHHHHH
Confidence 678899988874 678999999887665 45788999 999865554
No 238
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=20.16 E-value=3.6e+02 Score=26.10 Aligned_cols=72 Identities=13% Similarity=0.137 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEe-cCCCCCCcHHHHHHHHHHHHHcCcccEEEec-CCCHHHHHHHHHcCCCeeEe
Q 022300 57 TSSIVRESIDVSRRRMDVPCLDMLQFH-WWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSN 134 (299)
Q Consensus 57 ~~~~i~~~ve~SL~~Lg~d~iDl~~lH-~pd~~~~~~~~~~~~L~~l~~~Gkir~iGvs-~~~~~~l~~~~~~~~~~~~~ 134 (299)
+++.++.+.+ +|.|++=+.+.. +|.. .. .+....+.+... ++.+||- |-+++.+.++.+. ..++++
T Consensus 266 ~~eda~~a~~-----~GaD~lGfIf~~~SpR~-V~--~~~a~~i~~~l~---v~~VgVfv~~~~~~i~~i~~~-~~lD~v 333 (454)
T PRK09427 266 RPQDAKAAYD-----AGAVYGGLIFVEKSPRY-VS--LEQAQEIIAAAP---LRYVGVFRNADIEDIVDIAKQ-LSLAAV 333 (454)
T ss_pred CHHHHHHHHh-----CCCCEEeeEeCCCCCCC-CC--HHHHHHHHHhCC---CCEEEEEeCCCHHHHHHHHHH-cCCCEE
Confidence 4556555544 788888876433 2211 22 233333333332 8899987 7788888888775 678999
Q ss_pred eecccc
Q 022300 135 QVQHSV 140 (299)
Q Consensus 135 q~~~n~ 140 (299)
|++-+.
T Consensus 334 QLHG~e 339 (454)
T PRK09427 334 QLHGDE 339 (454)
T ss_pred EeCCCC
Confidence 998864
No 239
>COG4381 Mu-like prophage protein gp46 [Function unknown]
Probab=20.12 E-value=1.8e+02 Score=22.63 Aligned_cols=37 Identities=14% Similarity=0.228 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCCceeeeccCCCCHHH
Q 022300 214 LQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEH 256 (299)
Q Consensus 214 ~~~l~~la~~~~~s~aq~al~~~l~~~~v~~~i~g~~~~~~e~ 256 (299)
...+.-.|+.| |.-||+|+...+.+.++-+-++ .+.|
T Consensus 71 l~~V~~~Ae~Y----A~eALqwlv~sg~a~si~v~A~--~p~~ 107 (135)
T COG4381 71 LQRVSLLAEQY----ADEALQWLVKSGRADSIQVRAS--QPQH 107 (135)
T ss_pred hHHHHHHHHHH----HHHHHHHHHhcCccceEEEEee--cCCC
Confidence 34455555555 6679999999999999888777 6654
No 240
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=20.08 E-value=6.5e+02 Score=24.71 Aligned_cols=103 Identities=11% Similarity=0.085 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcC----------cccEEEecCCCHHHHHHH
Q 022300 55 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG----------KIKTVALTNFDTERLRII 124 (299)
Q Consensus 55 ~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~pd~~~~~~~~~~~~L~~l~~~G----------kir~iGvs~~~~~~l~~~ 124 (299)
.++.+.-.+ +-+.|.++|+|+|.+-+ |... ++.+++++.+.+.+ ..+-.+++....+.++.+
T Consensus 102 ~fs~eeKi~-Ia~~L~~~GVd~IEvG~---Pa~s----~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a 173 (503)
T PLN03228 102 SLTPPQKLE-IARQLAKLRVDIMEVGF---PGSS----EEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAA 173 (503)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEeC---CCCC----HHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHH
Confidence 456666554 44559999999888855 4322 22233344444331 123346666666677777
Q ss_pred HHc----CCCeeEeeecccccc------cCh------hhHHHHHHHHhCCeEEEccc
Q 022300 125 LEN----GIPVVSNQVQHSVVD------MRP------QQKMAELCQLTGVKLITYGT 165 (299)
Q Consensus 125 ~~~----~~~~~~~q~~~n~~~------~~~------~~~~~~~~~~~gi~v~~~~p 165 (299)
++. +.+-..+-+.-+.++ ... -.+.+++|+++|+..+.+++
T Consensus 174 ~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~ 230 (503)
T PLN03228 174 WEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGC 230 (503)
T ss_pred HHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecc
Confidence 665 112111111111111 111 14578899999976444444
Done!