BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022301
(299 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O22315|SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1
SV=1
Length = 303
Score = 317 bits (812), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 213/307 (69%), Positives = 239/307 (77%), Gaps = 16/307 (5%)
Query: 1 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAED 60
MSSR+SRT+YVGNLPGDIREREVEDLF KYGP+ IDLK+PPRPPGYAFVEF++ARDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 61 AIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGV-----------SRRSEY 109
AI GRDGYDFDGHRLRVELAHGGR RSS D S + G G SRRSE+
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEF 119
Query: 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS 169
RVLVTGLPSSASWQDLKDHMR+ GDVCFSQV+RD GTTG+VDYT Y+DMK+A+KKLDD+
Sbjct: 120 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 179
Query: 170 EFRNAFSRAYVRVREYDHRRDGSQSPSRGRSYSRGRSESRSRSRSRGRSYSRSRSQSKSP 229
EFRNAFS YVRVREYD R+D S+SPS R S +S SRSR RS RS SRSRS+S+SP
Sbjct: 180 EFRNAFSNGYVRVREYDSRKD-SRSPS--RGRSYSKSRSRSRGRSVSRSRSRSRSRSRSP 236
Query: 230 KAKSSRRSPDRSRSRS-ASRSRSGSKPRSLSRSRSRSRSPLPPKQISKSPKKRSVSRSPS 288
KAKSSRRSP +S SRS RS+S S SRSRSRS P K+ SKSP K S ++SP
Sbjct: 237 KAKSSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLPSVQKEGSKSPSKPSPAKSPI 296
Query: 289 GSRSRSR 295
+RS SR
Sbjct: 297 HTRSPSR 303
>sp|Q5ZML3|SRSF1_CHICK Serine/arginine-rich splicing factor 1 OS=Gallus gallus GN=SRSF1
PE=1 SV=3
Length = 257
Score = 192 bits (487), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 108/199 (54%), Positives = 136/199 (68%), Gaps = 12/199 (6%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGV---SRRSEYRVLVTGLPSSASWQDL 125
D+DG+RLRVE GRG SRRSEYRV+V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDL 137
Query: 126 KDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVRE 184
KDHMR AGDVC++ VFRDG TG+V++ +DM +A++KLD+++FR + AY+RV
Sbjct: 138 KDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV-- 192
Query: 185 YDHRRDGSQSPSRGRSYSR 203
+ DG +SPS GRS SR
Sbjct: 193 ---KVDGPRSPSYGRSRSR 208
>sp|Q6NYA0|SRS1B_DANRE Serine/arginine-rich splicing factor 1B OS=Danio rerio GN=srsf1b
PE=2 SV=1
Length = 245
Score = 182 bits (463), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/179 (55%), Positives = 125/179 (69%), Gaps = 7/179 (3%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNLP DIR ++VED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGY
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 76
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGV---SRRSEYRVLVTGLPSSASWQDL 125
D+DG+RLRVE GRG SRRSEYRV+V+GLP S SWQDL
Sbjct: 77 DYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDL 136
Query: 126 KDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVR 183
KDHMR AGDVC++ VFRDG TG+V++ +DM +A++KLD+++FR + AY+RV+
Sbjct: 137 KDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 192
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis
elegans GN=rsp-3 PE=1 SV=2
Length = 258
Score = 181 bits (459), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 101/190 (53%), Positives = 131/190 (68%), Gaps = 18/190 (9%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNLPGD+RE+EVED+F+KYG I ++D+K R P +AFVEFE+ RDAEDA+R RDGY
Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 69 DFDGHRLRVELA-------------HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTG 115
+FDG R+RVE G D GRG G RR+ YRV+V G
Sbjct: 70 EFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVEG 129
Query: 116 LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NA 174
LP + SWQDLKDHMR AGDVC++ V RDG TG+V++T Y+D+K+A++KLDD++FR +
Sbjct: 130 LPPTGSWQDLKDHMRDAGDVCYADVARDG---TGVVEFTRYEDVKYAVRKLDDTKFRSHE 186
Query: 175 FSRAYVRVRE 184
AY+RVRE
Sbjct: 187 GETAYIRVRE 196
>sp|Q6DII2|SRSF1_XENTR Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis
GN=srsf1 PE=2 SV=1
Length = 267
Score = 177 bits (450), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 100/198 (50%), Positives = 127/198 (64%), Gaps = 26/198 (13%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSS----------------------GRGRGVSRR 106
D+DG+RLRVE GRG GR SRR
Sbjct: 78 DYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPSRR 137
Query: 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 166
SEYRV+V+GLP S SWQDLKDHMR AGDVC++ VFRDG TG+V++ +DM +A++KL
Sbjct: 138 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKL 194
Query: 167 DDSEFR-NAFSRAYVRVR 183
D+++FR + AY+RV+
Sbjct: 195 DNTKFRSHEGETAYIRVK 212
>sp|Q3YLA6|SRSF1_PIG Serine/arginine-rich splicing factor 1 OS=Sus scrofa GN=SRSF1 PE=2
SV=3
Length = 248
Score = 177 bits (449), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 96/179 (53%), Positives = 124/179 (69%), Gaps = 7/179 (3%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGV---SRRSEYRVLVTGLPSSASWQDL 125
D+DG+RLRVE GRG SRRSE RV+V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDL 137
Query: 126 KDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVR 183
KDHMR AGDVC++ V+RDG TG+V++ +DM +A++KLD+++FR + AY+RV+
Sbjct: 138 KDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
>sp|Q6PDM2|SRSF1_MOUSE Serine/arginine-rich splicing factor 1 OS=Mus musculus GN=Srsf1
PE=1 SV=3
Length = 248
Score = 177 bits (449), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 96/179 (53%), Positives = 124/179 (69%), Gaps = 7/179 (3%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGV---SRRSEYRVLVTGLPSSASWQDL 125
D+DG+RLRVE GRG SRRSE RV+V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDL 137
Query: 126 KDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVR 183
KDHMR AGDVC++ V+RDG TG+V++ +DM +A++KLD+++FR + AY+RV+
Sbjct: 138 KDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
>sp|Q07955|SRSF1_HUMAN Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1
PE=1 SV=2
Length = 248
Score = 177 bits (449), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 96/179 (53%), Positives = 124/179 (69%), Gaps = 7/179 (3%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGV---SRRSEYRVLVTGLPSSASWQDL 125
D+DG+RLRVE GRG SRRSE RV+V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDL 137
Query: 126 KDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVR 183
KDHMR AGDVC++ V+RDG TG+V++ +DM +A++KLD+++FR + AY+RV+
Sbjct: 138 KDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
>sp|Q0VCY7|SRSF1_BOVIN Serine/arginine-rich splicing factor 1 OS=Bos taurus GN=SRSF1 PE=2
SV=1
Length = 248
Score = 177 bits (449), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 96/179 (53%), Positives = 124/179 (69%), Gaps = 7/179 (3%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGV---SRRSEYRVLVTGLPSSASWQDL 125
D+DG+RLRVE GRG SRRSE RV+V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDL 137
Query: 126 KDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVR 183
KDHMR AGDVC++ V+RDG TG+V++ +DM +A++KLD+++FR + AY+RV+
Sbjct: 138 KDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
>sp|Q7SXP4|SRS1A_DANRE Serine/arginine-rich splicing factor 1A OS=Danio rerio GN=srsf1a
PE=2 SV=2
Length = 257
Score = 177 bits (448), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/189 (53%), Positives = 127/189 (67%), Gaps = 17/189 (8%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNLP DIR ++VED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ RDGY
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGY 76
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGV-------------SRRSEYRVLVTG 115
D+DG+RLRVE GRG G G G SRRSEYRV+V+G
Sbjct: 77 DYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVSG 136
Query: 116 LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NA 174
LP S SWQDLKDHMR AGDVC++ VFRDG TG+V++ +DM +A++KLD+++FR +
Sbjct: 137 LPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHE 193
Query: 175 FSRAYVRVR 183
AY+RV+
Sbjct: 194 GETAYIRVK 202
>sp|Q5R7H2|SRSF1_PONAB Serine/arginine-rich splicing factor 1 OS=Pongo abelii GN=SRSF1
PE=2 SV=3
Length = 248
Score = 173 bits (438), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 100/191 (52%), Positives = 129/191 (67%), Gaps = 12/191 (6%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGV---SRRSEYRVLVTGLPSSASWQDL 125
D+DG+RLRVE GRG SRRSE RV+V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDL 137
Query: 126 KDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVRE 184
KDHMR AGDVC++ V+RDG TG+V++ +DM +A++KLD+++FR + AY+RV+
Sbjct: 138 KDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK- 193
Query: 185 YDHRRDGSQSP 195
DG +SP
Sbjct: 194 ----VDGPRSP 200
>sp|Q5PPI1|SRSF9_RAT Serine/arginine-rich splicing factor 9 OS=Rattus norvegicus
GN=Srsf9 PE=1 SV=1
Length = 221
Score = 170 bits (430), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/196 (50%), Positives = 129/196 (65%), Gaps = 24/196 (12%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNLP D+RE+++EDLFYKYG I I+LK +AFV FE+ RDAEDAI GR+GY
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 69 DFDGHRLRVEL--AHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLK 126
D+ RLRVE A+GGRG + R +RRS++RVLV+GLP S SWQDLK
Sbjct: 76 DYGQCRLRVEFPRAYGGRG-------GWPRASRNGPPTRRSDFRVLVSGLPPSGSWQDLK 128
Query: 127 DHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVREY 185
DHMR AGDVC++ V +DG G+V+Y +DM++A++KLDD++FR + +Y+RV
Sbjct: 129 DHMREAGDVCYADVQKDG---MGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRV--- 182
Query: 186 DHRRDGSQSPSRGRSY 201
P RG SY
Sbjct: 183 --------YPERGTSY 190
>sp|Q9D0B0|SRSF9_MOUSE Serine/arginine-rich splicing factor 9 OS=Mus musculus GN=Srsf9
PE=1 SV=1
Length = 222
Score = 168 bits (426), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/182 (51%), Positives = 124/182 (68%), Gaps = 23/182 (12%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNLP D+RE+++EDLFYKYG I I+LK +AFV FE+ RDAEDAI GR+GY
Sbjct: 17 IYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 76
Query: 69 DFDGHRLRVEL--AHGGRGRSSSDRHSSHSSGRGRGV-----SRRSEYRVLVTGLPSSAS 121
D+ RLRVE +GGRG G RG +RRS++RVLV+GLP S S
Sbjct: 77 DYGQCRLRVEFPRTYGGRG------------GWPRGARNGPPTRRSDFRVLVSGLPPSGS 124
Query: 122 WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYV 180
WQDLKDHMR AGDVC++ V +DG G+V+Y +DM++A++KLDD++FR + +Y+
Sbjct: 125 WQDLKDHMREAGDVCYADVQKDG---MGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYI 181
Query: 181 RV 182
RV
Sbjct: 182 RV 183
>sp|Q13242|SRSF9_HUMAN Serine/arginine-rich splicing factor 9 OS=Homo sapiens GN=SRSF9
PE=1 SV=1
Length = 221
Score = 164 bits (415), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 91/175 (52%), Positives = 121/175 (69%), Gaps = 9/175 (5%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNLP D+RE+++EDLFYKYG I I+LK +AFV FE+ RDAEDAI GR+GY
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDH 128
D+ RLRVE R+ R GR +RRS++RVLV+GLP S SWQDLKDH
Sbjct: 76 DYGQCRLRVEFP-----RTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDH 130
Query: 129 MRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRV 182
MR AGDVC++ V +DG G+V+Y +DM++A++KLDD++FR + +Y+RV
Sbjct: 131 MREAGDVCYADVQKDG---VGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRV 182
>sp|Q8VE97|SRSF4_MOUSE Serine/arginine-rich splicing factor 4 OS=Mus musculus GN=Srsf4
PE=2 SV=1
Length = 489
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 101/174 (58%), Gaps = 23/174 (13%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+Y+G L RER+VE F YG I +DLK GY FVEF++ RDA+DA+ +G
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLK-----NGYGFVEFDDLRDADDAVYELNGK 58
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSSGR--------GR---GVSRRSEYRVLVTGLP 117
D G R+ VE A G R R S+ SGR GR G R+EYR++V L
Sbjct: 59 DLCGERVIVEHARGPR------RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLS 112
Query: 118 SSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171
S SWQDLKD+MR+AG+V ++ + G G++++ +Y DMK A++KLD +E
Sbjct: 113 SRCSWQDLKDYMRQAGEVTYADAHK-GRKNEGVIEFVSYSDMKRALEKLDGTEV 165
>sp|Q08170|SRSF4_HUMAN Serine/arginine-rich splicing factor 4 OS=Homo sapiens GN=SRSF4
PE=1 SV=2
Length = 494
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 101/174 (58%), Gaps = 23/174 (13%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+Y+G L RER+VE F YG I +DLK GY FVEF++ RDA+DA+ +G
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLK-----NGYGFVEFDDLRDADDAVYELNGK 58
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSSGR-GRGVSR----------RSEYRVLVTGLP 117
D G R+ VE A G R R S+ SGR G G R R+EYR++V L
Sbjct: 59 DLCGERVIVEHARGPR------RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLS 112
Query: 118 SSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171
S SWQDLKD+MR+AG+V ++ + G G++++ +Y DMK A++KLD +E
Sbjct: 113 SRCSWQDLKDYMRQAGEVTYADAHK-GRKNEGVIEFVSYSDMKRALEKLDGTEV 165
>sp|Q13247|SRSF6_HUMAN Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6
PE=1 SV=2
Length = 344
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 101/174 (58%), Gaps = 17/174 (9%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+Y+G L ++RE++++ F YG + +DLK GY FVEFE++RDA+DA+ +G
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLK-----NGYGFVEFEDSRDADDAVYELNGK 58
Query: 69 DFDGHRLRVELAHGGR----------GRSSSDRHSSHSSGRGR-GVSRRSEYRVLVTGLP 117
+ G R+ VE A G R S +SGR + G R+EYR++V L
Sbjct: 59 ELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLS 118
Query: 118 SSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171
S SWQDLKD MR+AG+V ++ ++ + G++++ +Y DMK A+ KLD +E
Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERT-NEGVIEFRSYSDMKRALDKLDGTEI 171
>sp|Q3B7L6|SRSF6_BOVIN Serine/arginine-rich splicing factor 6 OS=Bos taurus GN=SRSF6 PE=2
SV=1
Length = 345
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 101/174 (58%), Gaps = 17/174 (9%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+Y+G L ++RE++++ F YG + IDLK GY FVEFE++RDA+DA+ +G
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLGIDLK-----NGYGFVEFEDSRDADDAVYELNGK 58
Query: 69 DFDGHRLRVELAHGGR----------GRSSSDRHSSHSSGRGR-GVSRRSEYRVLVTGLP 117
+ G R+ VE A G R S +SGR + G R+E+R++V L
Sbjct: 59 ELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLS 118
Query: 118 SSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171
S SWQDLKD MR+AG+V ++ ++ + G++++ +Y DMK A+ KLD +E
Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERT-NEGVIEFRSYSDMKRALDKLDGTEI 171
>sp|P26686|SRR55_DROME Serine-arginine protein 55 OS=Drosophila melanogaster GN=B52 PE=1
SV=4
Length = 376
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 100/182 (54%), Gaps = 25/182 (13%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVG LP +RER++E F YG I +K GY FVEFE+ RDA+DA+ +G
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIK-----NGYGFVEFEDYRDADDAVYELNGK 60
Query: 69 DFDGHRLRVELAHG-GRGRSS------------------SDRHSSHSSGRGRGVSRRSEY 109
+ G R+ VE A G RG + ++++ + S G R+EY
Sbjct: 61 ELLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEY 120
Query: 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS 169
R++V L S SWQDLKD+MR+AG+V ++ + G+V++ + DMK AI+KLDD+
Sbjct: 121 RLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQ-RRNEGVVEFASLSDMKTAIEKLDDT 179
Query: 170 EF 171
E
Sbjct: 180 EL 181
>sp|Q09167|SRSF5_RAT Serine/arginine-rich splicing factor 5 OS=Rattus norvegicus
GN=Srsf5 PE=2 SV=1
Length = 269
Score = 97.8 bits (242), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 93/175 (53%), Gaps = 23/175 (13%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+++G L RE++VE F YG I IDLK G+ FVEFE+ RDA+DA+ Y
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAV-----Y 55
Query: 69 DFDGHRL---RVELAHGGRGRSS-------SDRHSSH--SSGRGRGVSRRSEYRVLVTGL 116
+ DG L RV + H SDR SS + R R+E R++V L
Sbjct: 56 ELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENL 115
Query: 117 PSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171
S SWQDLKD MR+AG+V F+ R G+V++ +Y D+K+AI+KL E
Sbjct: 116 SSRVSWQDLKDFMRQAGEVTFADAHRP-KLNEGVVEFASYGDLKNAIEKLSGKEI 169
>sp|O35326|SRSF5_MOUSE Serine/arginine-rich splicing factor 5 OS=Mus musculus GN=Srsf5
PE=1 SV=2
Length = 269
Score = 97.8 bits (242), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 93/175 (53%), Gaps = 23/175 (13%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+++G L RE++VE F YG I IDLK G+ FVEFE+ RDA+DA+ Y
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAV-----Y 55
Query: 69 DFDGHRL---RVELAHGGRGRSS-------SDRHSSH--SSGRGRGVSRRSEYRVLVTGL 116
+ DG L RV + H SDR SS + R R+E R++V L
Sbjct: 56 ELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENL 115
Query: 117 PSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171
S SWQDLKD MR+AG+V F+ R G+V++ +Y D+K+AI+KL E
Sbjct: 116 SSRVSWQDLKDFMRQAGEVTFADAHRP-KLNEGVVEFASYGDLKNAIEKLSGKEI 169
>sp|Q13243|SRSF5_HUMAN Serine/arginine-rich splicing factor 5 OS=Homo sapiens GN=SRSF5
PE=1 SV=1
Length = 272
Score = 97.8 bits (242), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 93/175 (53%), Gaps = 23/175 (13%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+++G L RE++VE F YG I IDLK G+ FVEFE+ RDA+DA+ Y
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAV-----Y 55
Query: 69 DFDGHRL---RVELAHGGRGRSS-------SDRHSSH--SSGRGRGVSRRSEYRVLVTGL 116
+ DG L RV + H SDR SS + R R+E R++V L
Sbjct: 56 ELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENL 115
Query: 117 PSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171
S SWQDLKD MR+AG+V F+ R G+V++ +Y D+K+AI+KL E
Sbjct: 116 SSRVSWQDLKDFMRQAGEVTFADAHRP-KLNEGVVEFASYGDLKNAIEKLSGKEI 169
>sp|P78814|SRP2_SCHPO Pre-mRNA-splicing factor srp2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=srp2 PE=1 SV=2
Length = 365
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 89/159 (55%), Gaps = 9/159 (5%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
L+VG +P ++ D F YG I +D K+ G+ FVE E+ARDA D + G
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQI--LDCKLMN---GFGFVEVEDARDARDIVNDFQGK 60
Query: 69 DFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDH 128
+F G R+ VE A G R R + R S+ S RR+ +R++V L SWQDLKD
Sbjct: 61 EFMGSRIVVEPARGERRRRENFRESAASK---YPRPRRTGFRLIVENLSEDVSWQDLKDV 117
Query: 129 MRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 167
MR+AG+ F+ R+ G G+V+++ +DM++A+ L+
Sbjct: 118 MRKAGEPTFTDAHRENPG-AGVVEFSTEEDMRNALTSLN 155
>sp|P92964|RSP31_ARATH Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis thaliana
GN=RSP31 PE=1 SV=2
Length = 264
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 127/280 (45%), Gaps = 37/280 (13%)
Query: 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66
R ++VGN + R+ ++E LF KYG + +D+K GYAFV FE+ RDAEDAIR D
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKS-----GYAFVYFEDERDAEDAIRKLD 56
Query: 67 GYDF--DGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQD 124
+ F + RL VE A G RGR D + + + + ++ P D
Sbjct: 57 NFPFGYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTL-------FVINFDPIRTKEHD 109
Query: 125 LKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184
++ H G V ++ R+ S V + +D A++ S+ + +++
Sbjct: 110 IEKHFEPYGKVTNVRIRRNFS----FVQFETQEDATKALEATQRSKILDRVVSVEYALKD 165
Query: 185 YDHR--RDGSQSPSRGRS--YSR------GRSESRSRSRSRGRSYSRSRSQS----KSPK 230
D R R+G +SP R S Y R GR S + R Y R+RS K P
Sbjct: 166 DDERDDRNGGRSPRRSLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRARSPEYDRYKGPA 225
Query: 231 AKSSRRSPDRSRSRSASRSRSGSKPRSLSRSRSRSRSPLP 270
A RRSPD R RS + RS R RSRSP+P
Sbjct: 226 AYERRRSPDYGR-----RSSDYGRQRSPGYDRYRSRSPVP 260
>sp|Q23120|RSP2_CAEEL Probable splicing factor, arginine/serine-rich 2 OS=Caenorhabditis
elegans GN=rsp-2 PE=3 SV=1
Length = 281
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 91/177 (51%), Gaps = 30/177 (16%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+Y+G LP +R+VE F YG ++ + +K G+ FV+F++ RDA+DA+ +G
Sbjct: 4 VYIGRLPNRASDRDVEHFFRGYGKLSDVIMK-----NGFGFVDFQDQRDADDAVHDLNGK 58
Query: 69 DFDGHRLRVEL------------AHGGRGRSSSDRHSSHSSGRGRGVSRR------SEYR 110
+ G R+ +E G RGR + R G R S R + +R
Sbjct: 59 ELCGERVILEFPRRKVGYNEERSGSGFRGREPTFR-----KGGERQFSNRYSRPCSTRFR 113
Query: 111 VLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 166
+++ L + SWQD+KDH+R+ G + +S+ + IV +T++DD++ A+ KL
Sbjct: 114 LVIDNLSTRYSWQDIKDHIRKLGIEPTYSEAHKRNV-NQAIVCFTSHDDLRDAMNKL 169
>sp|P92965|RSP40_ARATH Arginine/serine-rich-splicing factor RSP40 OS=Arabidopsis thaliana
GN=RSP40 PE=1 SV=2
Length = 350
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 88/187 (47%), Gaps = 14/187 (7%)
Query: 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66
+ ++ GN D RE ++E LF KYG + +D+K G+AFV E+ RDAEDAIR D
Sbjct: 2 KPVFCGNFEYDAREGDLERLFRKYGKVERVDMKA-----GFAFVYMEDERDAEDAIRALD 56
Query: 67 GYDF--DGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQD 124
++F G RLRVE RG D+ S S R R S+ ++ + +D
Sbjct: 57 RFEFGRKGRRLRVEWTKSERG---GDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRD 113
Query: 125 LKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184
L+ H G + ++ R+ + Y +D A+ ++S+ + V++
Sbjct: 114 LEKHFEPYGKIVNVRIRRN----FAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKD 169
Query: 185 YDHRRDG 191
D R +G
Sbjct: 170 DDARGNG 176
>sp|Q8BL97|SRSF7_MOUSE Serine/arginine-rich splicing factor 7 OS=Mus musculus GN=Srsf7
PE=1 SV=1
Length = 267
Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNL + E+E F YGP+ + I PPG+AFVEFE+ RDAEDA+RG DG
Sbjct: 42 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGK 99
Query: 69 DFDGHRLRVELAHGGRGRSSSDR 91
G R+RVEL+ G RS DR
Sbjct: 100 VICGSRVRVELSTGMPRRSRFDR 122
>sp|Q02427|RBP1_DROME RNA-binding protein 1 OS=Drosophila melanogaster GN=Rbp1 PE=2
SV=3
Length = 144
Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNL + E+E F KYGP+ ++ + PPG+AFVEFE+ RDAEDA R DG
Sbjct: 13 VYVGNLGSSASKHEIEGAFAKYGPLRNV--WVARNPPGFAFVEFEDRRDAEDATRALDGT 70
Query: 69 DFDGHRLRVEL 79
G R+RVE+
Sbjct: 71 RCCGTRIRVEM 81
>sp|Q16629|SRSF7_HUMAN Serine/arginine-rich splicing factor 7 OS=Homo sapiens GN=SRSF7
PE=1 SV=1
Length = 238
Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNL + E+E F YGP+ + I PPG+AFVEFE+ RDAEDA+RG DG
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 69 DFDGHRLRVELAHGGRGRSSSDR 91
G R+RVEL+ G RS DR
Sbjct: 71 VICGSRVRVELSTGMPRRSRFDR 93
>sp|Q3T106|SRSF7_BOVIN Serine/arginine-rich splicing factor 7 OS=Bos taurus GN=SRSF7
PE=2 SV=1
Length = 235
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNL + E+E F YGP+ + I PPG+AFVEFE+ RDAEDA+RG DG
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 69 DFDGHRLRVELAHGGRGRSSSDR 91
G R+RVEL+ G RS DR
Sbjct: 71 VICGSRVRVELSTGMPRRSRFDR 93
>sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1 OS=Caenorhabditis
elegans GN=rsp-1 PE=3 SV=1
Length = 312
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 87/189 (46%), Gaps = 37/189 (19%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+Y+G L + E+++E F YG I + LK G+ FVEF++ RDAEDA+ +G
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLLK-----NGFGFVEFDDKRDAEDAVHDLNGK 59
Query: 69 DFDGHRLRVELAH---------------GGRGRSSS---------DRHSSHSSGRGRGVS 104
+ G R+ ++ + G R SS DR + G R S
Sbjct: 60 ELGGERVILDYSKPRGGGGDRGGFGGGGRGGARVSSYSGGGGGGRDRFDRYDRGPPRRES 119
Query: 105 R-----RSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDD 158
R + +RV+V L S SWQDLKD +RR G + +++ + ++ + D
Sbjct: 120 RYGRPYSTRHRVVVENLSSRISWQDLKDQVRRQGVEPTYAEAHK--RPNEALLCFATPSD 177
Query: 159 MKHAIKKLD 167
+K I+K D
Sbjct: 178 LKRCIEKCD 186
>sp|P84104|SRSF3_MOUSE Serine/arginine-rich splicing factor 3 OS=Mus musculus GN=Srsf3
PE=1 SV=1
Length = 164
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNL + + E+E F YGP+ + + PPG+AFVEFE+ RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 DFDGHRLRVELAHG 82
G R+RVEL++G
Sbjct: 70 TLCGCRVRVELSNG 83
>sp|P84103|SRSF3_HUMAN Serine/arginine-rich splicing factor 3 OS=Homo sapiens GN=SRSF3
PE=1 SV=1
Length = 164
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNL + + E+E F YGP+ + + PPG+AFVEFE+ RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 DFDGHRLRVELAHG 82
G R+RVEL++G
Sbjct: 70 TLCGCRVRVELSNG 83
>sp|Q3SZR8|SRSF3_BOVIN Serine/arginine-rich splicing factor 3 OS=Bos taurus GN=SRSF3
PE=2 SV=1
Length = 164
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNL + + E+E F YGP+ + + PPG+AFVEFE+ RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 DFDGHRLRVELAHG 82
G R+RVEL++G
Sbjct: 70 TLCGCRVRVELSNG 83
>sp|Q10021|RSP5_CAEEL Probable splicing factor, arginine/serine-rich 5
OS=Caenorhabditis elegans GN=rsp-5 PE=3 SV=3
Length = 208
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 7/76 (9%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
LY+G +P + RER+VE YG I +I +K G+AFV+FE++RDAEDA DG
Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISMKY-----GFAFVDFEDSRDAEDACHDLDGK 58
Query: 69 DFDG--HRLRVELAHG 82
+G RL VE+A G
Sbjct: 59 TMEGSSMRLVVEMARG 74
>sp|Q18409|RSP6_CAEEL Probable splicing factor, arginine/serine-rich 6
OS=Caenorhabditis elegans GN=rsp-6 PE=3 SV=1
Length = 179
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVG LP D +E+E++F ++G I + + RPPG+AFVE+++ RDAEDA+R DG
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKV--WVARRPPGFAFVEYDDVRDAEDAVRALDGS 62
Query: 69 DFDGHRLRVEL 79
G R RVEL
Sbjct: 63 RICGVRARVEL 73
>sp|P92966|RSP41_ARATH Arginine/serine-rich-splicing factor RSP41 OS=Arabidopsis thaliana
GN=RSP41 PE=1 SV=2
Length = 356
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 130/314 (41%), Gaps = 49/314 (15%)
Query: 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66
+ ++ GN D RE ++E LF KYG + +D+K G+AFV E+ RDAEDAIR D
Sbjct: 2 KPVFCGNFEYDARESDLERLFRKYGKVERVDMKA-----GFAFVYMEDERDAEDAIRALD 56
Query: 67 GYDF--DGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSAS-WQ 123
+++ G RLRVE ++ R R + V + + +
Sbjct: 57 RFEYGRTGRRLRVEWT-----KNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTR 111
Query: 124 DLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183
DL+ H G + ++ R+ + Y +D A+ + S+ + V+
Sbjct: 112 DLERHFEPYGKIVNVRIRRN----FAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVK 167
Query: 184 EYDHRRDG-------------------SQSPSRGR-SYSRGRSESRSRSRSRGRSYSRSR 223
+ D R +G RG Y RG S + Y R R
Sbjct: 168 DDDSRGNGYSPERRRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGR 227
Query: 224 SQSKSPKAKSSRRSP-----DRSRSRSASRSRSGSKPRSLSRSRSRSRSPLP--PKQISK 276
+S SP K +R SP DR R R AS + RS + R SRSP P ++ S+
Sbjct: 228 -RSPSP-YKRARLSPDYKRDDRRRERVASPENGAVRNRSPRKGRGESRSPPPYEKRRESR 285
Query: 277 SP---KKRSVSRSP 287
SP +KR SRSP
Sbjct: 286 SPPPYEKRRESRSP 299
>sp|P38922|HRB1_YEAST Protein HRB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=HRB1 PE=1 SV=2
Length = 454
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 9/167 (5%)
Query: 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPP--GYAFVEFEEARDAEDAIR 63
S +++VGNL D ++ + F + G + D+ I R G VEF + D + AIR
Sbjct: 160 SNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADI-ITSRGHHRGMGTVEFTNSDDVDRAIR 218
Query: 64 GRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQ 123
DG F ++ V + + +R + RG R + V+V LP+S +WQ
Sbjct: 219 QYDGAFFMDRKIFVRQDNPPPSNNIKERKALD---RGELRHNRKTHEVIVKNLPASVNWQ 275
Query: 124 DLKDHMRRAGDVCFSQVFRDGSGT---TGIVDYTNYDDMKHAIKKLD 167
LKD + G+V + V DG G +G V + + D+ AI+K +
Sbjct: 276 ALKDIFKECGNVAHADVELDGDGVSTGSGTVSFYDIKDLHRAIEKYN 322
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 26/190 (13%)
Query: 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPR--PPGYAFVEFEEARDAED 60
+R + + V NLP + + ++D+F + G +AH D+++ G V F + +D
Sbjct: 257 NRKTHEVIVKNLPASVNWQALKDIFKECGNVAHADVELDGDGVSTGSGTVSFYDIKDLHR 316
Query: 61 AIRGRDGYDFDGHRLRVELAHGGRGRSSSD----------------RHSSHSSGRGRGVS 104
AI +GY +G+ L V+ S D + + + G G
Sbjct: 317 AIEKYNGYSIEGNVLDVKSKESVHNHSDGDDVDIPMDDSPVNEEARKFTENVVGGG---- 372
Query: 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGT-TGI--VDYTNYDDMKH 161
+ + LP S + DL D G V +++ D G TGI V+Y N DD
Sbjct: 373 -ERNRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPTGIAVVEYDNVDDADV 431
Query: 162 AIKKLDDSEF 171
I++L++ +
Sbjct: 432 CIERLNNYNY 441
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPR--PPGYAFVEFEEARDAEDAIR 63
+R +Y NLP + ++ DLF G + + +L+ + P G A VE++ DA+ I
Sbjct: 375 NRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPTGIAVVEYDNVDDADVCIE 434
Query: 64 GRDGYDFDGHRLRVELA 80
+ Y++ G L + A
Sbjct: 435 RLNNYNYGGCDLDISYA 451
>sp|Q9FYB7|RSZ32_ARATH Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis
thaliana GN=RS2Z32 PE=1 SV=1
Length = 284
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
LYVG L R R++E LF +YG + +D+K YAFVEF + RDA+DA DG
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKR-----DYAFVEFSDPRDADDARYYLDGR 67
Query: 69 DFDGHRLRVELAHG 82
DFDG R+ VE + G
Sbjct: 68 DFDGSRITVEASRG 81
>sp|Q8VYA5|RSZ33_ARATH Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis
thaliana GN=RS2Z33 PE=1 SV=1
Length = 290
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
LYVG L R R++E LF +YG + +D+K YAFVEF + RDA+DA DG
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKR-----DYAFVEFGDPRDADDARHYLDGR 67
Query: 69 DFDGHRLRVELAHG 82
DFDG R+ VE + G
Sbjct: 68 DFDGSRITVEFSRG 81
>sp|Q9SJA6|RZ22A_ARATH Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis
thaliana GN=RSZ22A PE=1 SV=1
Length = 196
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 6/73 (8%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNL + ERE+ED F +G I + + RPPGYAF++FE++RDA DAIR DG
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVIRSV--WVARRPPGYAFLDFEDSRDARDAIREVDG- 60
Query: 69 DFDGHRLRVELAH 81
+ RVE +H
Sbjct: 61 ---KNGWRVEQSH 70
>sp|O81126|RZP22_ARATH Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis
thaliana GN=RSZ22 PE=1 SV=1
Length = 200
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNL + ERE+ED F +G + + + RPPGYAF++FE+ RDA DAIR DG
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSV--WVARRPPGYAFLDFEDPRDARDAIRALDG- 60
Query: 69 DFDGHRLRVELAH 81
+ RVE +H
Sbjct: 61 ---KNGWRVEQSH 70
>sp|Q69KL9|RZ21A_ORYSJ Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa
subsp. japonica GN=RSZ21A PE=2 SV=1
Length = 185
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 54/91 (59%), Gaps = 9/91 (9%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNL + RE+ED F +G + + + +PPG+AF++F++ RDA+DAIR
Sbjct: 4 VYVGNLDPRVTARELEDEFRVFGVLRSV--WVARKPPGFAFIDFDDRRDAQDAIR----- 56
Query: 69 DFDGHR-LRVELA-HGGRGRSSSDRHSSHSS 97
D DG RVEL+ + GR DR+ S S
Sbjct: 57 DIDGKNGWRVELSRNASSGRGGRDRYGSSES 87
>sp|Q6K9C3|RZP23_ORYSJ Serine/arginine-rich splicing factor RSZ23 OS=Oryza sativa subsp.
japonica GN=RSZ23 PE=2 SV=1
Length = 200
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 51/85 (60%), Gaps = 11/85 (12%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
+YVGNL + RE+ED F +G + + + +PPG+AF++F++ RDAEDAIR
Sbjct: 4 VYVGNLDPRVTAREIEDEFRVFGVLRSV--WVARKPPGFAFIDFDDRRDAEDAIR----- 56
Query: 69 DFDGHR-LRVEL---AHGGRGRSSS 89
D DG RVEL A GRGR S
Sbjct: 57 DLDGKNGWRVELSTKAGSGRGRDRS 81
>sp|Q6K4N0|RSZ21_ORYSJ Serine/arginine-rich splicing factor RSZ21 OS=Oryza sativa subsp.
japonica GN=RSZP21 PE=2 SV=1
Length = 185
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 8/87 (9%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68
LYVGNL + E+ED F +G + + + +PPG+AF++F++ RDAEDA+R
Sbjct: 4 LYVGNLDPRVTSGELEDEFRVFGVLRSV--WVARKPPGFAFIDFDDKRDAEDALR----- 56
Query: 69 DFDG-HRLRVELAHGGRGRSSSDRHSS 94
D DG + RVEL+ R DRH
Sbjct: 57 DLDGKNGWRVELSRNSSSRGGRDRHGG 83
>sp|P15771|NUCL_CHICK Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1
Length = 694
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 23/175 (13%)
Query: 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP----RPPGYAFVEFEEARDAE 59
R S+TL V NL E +++LF K +K+P RP GYAFVEF A DA+
Sbjct: 458 RESKTLIVNNLSYAASEETLQELFKK-----ATSIKMPQNNQGRPKGYAFVEFPTAEDAK 512
Query: 60 DAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSS 119
+A+ + + +G +R+E SS + + RG G +++S+ + V GL
Sbjct: 513 EALNSCNNTEIEGRAIRLEF-------SSPSWQKGNMNARG-GFNQQSK-TLFVRGLSED 563
Query: 120 ASWQDLKDHMRRAGDVCFSQVFRDGSGTT---GIVDYTNYDDMKHAIKKLDDSEF 171
+ + L++ G + V +G++ G VD+++ +D K A + ++D E
Sbjct: 564 TTEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEI 616
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 12/168 (7%)
Query: 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63
R +RTL+V NLP + E E++++F + + L G A++EF+ +AE A+
Sbjct: 368 RDARTLFVKNLPYRVTEDEMKNVFENALEV-RLVLNKEGSSKGMAYIEFKTEAEAEKALE 426
Query: 64 GRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQ 123
+ G + DG + ++ + S S +G G R ++V L +AS +
Sbjct: 427 EKQGTEVDGRAMVIDY---------TGEKSQQESQKGGG--ERESKTLIVNNLSYAASEE 475
Query: 124 DLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171
L++ ++A + Q + V++ +D K A+ +++E
Sbjct: 476 TLQELFKKATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEI 523
>sp|Q9R0U0|SRS10_MOUSE Serine/arginine-rich splicing factor 10 OS=Mus musculus GN=Srsf10
PE=1 SV=2
Length = 262
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 7/82 (8%)
Query: 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP-----RPPGYAFVEFEEARDAEDAI 62
+L+V N+ D R ++ F +YGPI +D+ +P RP G+A+V+FE+ RDAEDA+
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPI--VDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL 68
Query: 63 RGRDGYDFDGHRLRVELAHGGR 84
D G ++ ++ A G R
Sbjct: 69 HNLDRKWICGRQIEIQFAQGDR 90
>sp|O75494|SRS10_HUMAN Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10
PE=1 SV=1
Length = 262
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 7/82 (8%)
Query: 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP-----RPPGYAFVEFEEARDAEDAI 62
+L+V N+ D R ++ F +YGPI +D+ +P RP G+A+V+FE+ RDAEDA+
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPI--VDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL 68
Query: 63 RGRDGYDFDGHRLRVELAHGGR 84
D G ++ ++ A G R
Sbjct: 69 HNLDRKWICGRQIEIQFAQGDR 90
>sp|Q9P3U1|YKX5_SCHPO Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=4 SV=3
Length = 464
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
Query: 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPR--PPGYAFVEFEEARDAED 60
++ R +YVGNL +R E+++ + G + + ++ P G A +E+ A +A
Sbjct: 73 TQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEART 132
Query: 61 AIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSA 120
AI+ F G + + R S S +S G+ + ++ V LP +
Sbjct: 133 AIKTLSNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGK--DSEPDRQLFVGNLPYNV 190
Query: 121 SWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEF 171
WQDLKD R+AG V + + + G GIV ++ + HAI+ L +++F
Sbjct: 191 RWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDF 244
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP--RPPGYAFVEFEEARDAEDAI 62
S +YVGNLP +R + DLF G + + P R G+ V+FE DA +I
Sbjct: 308 CSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSI 367
Query: 63 RGRDGYDFDGHRLRVELAH 81
+GY + G L++ AH
Sbjct: 368 EKLNGYRYGGRPLQLSYAH 386
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGR 65
L+VG L D E+ +E +F KYG I + + + R G+ FV FE DA+DA+ G
Sbjct: 8 LFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGM 67
Query: 66 DGYDFDGHRLRVELAHGGRGRSSSD 90
+G DG ++RV+ A G+SS+D
Sbjct: 68 NGKTVDGRQIRVDQA----GKSSND 88
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,303,761
Number of Sequences: 539616
Number of extensions: 4957428
Number of successful extensions: 50101
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 1290
Number of HSP's that attempted gapping in prelim test: 20828
Number of HSP's gapped (non-prelim): 11800
length of query: 299
length of database: 191,569,459
effective HSP length: 117
effective length of query: 182
effective length of database: 128,434,387
effective search space: 23375058434
effective search space used: 23375058434
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)