Query 022301
Match_columns 299
No_of_seqs 321 out of 2923
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 02:29:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022301.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022301hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 1E-32 2.2E-37 236.2 22.0 163 4-185 105-274 (346)
2 TIGR01645 half-pint poly-U bin 100.0 8E-30 1.7E-34 229.2 20.9 169 5-185 106-281 (612)
3 KOG0105 Alternative splicing f 100.0 5.9E-29 1.3E-33 184.8 21.1 187 1-190 1-194 (241)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.3E-29 2.8E-34 221.8 20.6 153 5-176 2-161 (352)
5 TIGR01622 SF-CC1 splicing fact 100.0 4.9E-29 1.1E-33 225.3 21.3 166 4-177 87-259 (457)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.7E-28 5.8E-33 213.5 23.9 172 5-176 88-341 (352)
7 KOG0148 Apoptosis-promoting RN 100.0 2.4E-29 5.3E-34 197.6 14.7 166 8-178 64-232 (321)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.7E-28 5.9E-33 220.2 22.4 162 5-176 1-164 (481)
9 TIGR01628 PABP-1234 polyadenyl 100.0 7.1E-28 1.5E-32 222.7 19.8 152 8-176 2-159 (562)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.4E-27 7.5E-32 213.1 22.2 170 4-175 273-465 (481)
11 TIGR01642 U2AF_lg U2 snRNP aux 100.0 4.6E-27 1E-31 215.3 21.9 170 3-176 172-367 (509)
12 KOG0117 Heterogeneous nuclear 100.0 2E-27 4.3E-32 198.9 16.8 178 6-187 83-334 (506)
13 TIGR01648 hnRNP-R-Q heterogene 100.0 6.1E-27 1.3E-31 210.5 21.0 167 6-176 58-299 (578)
14 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.3E-26 2.9E-31 212.3 21.8 174 4-177 293-495 (509)
15 KOG0109 RNA-binding protein LA 99.9 9.6E-28 2.1E-32 190.5 11.2 145 7-181 3-147 (346)
16 KOG0131 Splicing factor 3b, su 99.9 3.4E-27 7.3E-32 175.2 13.4 165 4-186 7-179 (203)
17 KOG0145 RNA-binding protein EL 99.9 7.1E-27 1.5E-31 182.8 13.8 154 4-176 39-199 (360)
18 TIGR01628 PABP-1234 polyadenyl 99.9 3.1E-26 6.8E-31 211.7 18.4 173 5-178 177-358 (562)
19 TIGR01622 SF-CC1 splicing fact 99.9 3.7E-25 7.9E-30 200.1 22.1 176 6-181 186-445 (457)
20 KOG0144 RNA-binding protein CU 99.9 2.6E-26 5.7E-31 191.4 13.2 162 5-184 33-204 (510)
21 KOG0145 RNA-binding protein EL 99.9 3.1E-25 6.8E-30 173.6 15.9 174 6-179 127-353 (360)
22 KOG0127 Nucleolar protein fibr 99.9 1.6E-24 3.5E-29 185.6 16.3 172 5-176 4-188 (678)
23 KOG0127 Nucleolar protein fibr 99.9 1.2E-23 2.6E-28 180.4 19.1 177 6-182 117-376 (678)
24 KOG4676 Splicing factor, argin 99.9 4.5E-26 9.8E-31 187.7 3.6 167 4-172 5-214 (479)
25 KOG0106 Alternative splicing f 99.9 1.9E-23 4.2E-28 163.3 11.5 163 7-178 2-165 (216)
26 KOG4207 Predicted splicing fac 99.9 3.8E-22 8.2E-27 151.3 16.6 75 102-176 7-85 (256)
27 KOG0123 Polyadenylate-binding 99.9 2.3E-22 5E-27 173.3 16.9 142 7-176 2-145 (369)
28 KOG0124 Polypyrimidine tract-b 99.9 3.2E-23 6.9E-28 169.7 8.8 162 7-176 114-282 (544)
29 KOG4206 Spliceosomal protein s 99.9 3.5E-21 7.5E-26 149.0 17.1 170 2-172 5-209 (221)
30 KOG0110 RNA-binding protein (R 99.9 5.7E-22 1.2E-26 175.2 13.6 160 7-176 516-685 (725)
31 KOG4207 Predicted splicing fac 99.9 4.4E-21 9.5E-26 145.5 16.5 80 4-83 11-93 (256)
32 KOG0107 Alternative splicing f 99.9 3.5E-21 7.7E-26 142.4 15.3 73 107-180 9-81 (195)
33 KOG0107 Alternative splicing f 99.9 3.4E-20 7.3E-25 137.3 15.4 79 4-84 8-86 (195)
34 KOG0144 RNA-binding protein CU 99.9 6.9E-21 1.5E-25 159.3 12.4 181 5-185 123-505 (510)
35 KOG0123 Polyadenylate-binding 99.9 1.7E-20 3.7E-25 161.8 15.2 160 3-174 73-236 (369)
36 KOG0146 RNA-binding protein ET 99.8 2.4E-20 5.2E-25 146.9 12.0 172 5-176 18-357 (371)
37 KOG1457 RNA binding protein (c 99.8 8.2E-20 1.8E-24 140.3 14.5 169 5-173 33-275 (284)
38 TIGR01645 half-pint poly-U bin 99.8 7.4E-19 1.6E-23 158.8 21.7 78 5-82 203-283 (612)
39 KOG0148 Apoptosis-promoting RN 99.8 3.5E-20 7.5E-25 146.3 11.2 128 1-174 1-132 (321)
40 KOG0147 Transcriptional coacti 99.8 5.1E-20 1.1E-24 158.8 12.8 171 9-180 281-524 (549)
41 KOG0147 Transcriptional coacti 99.8 5.2E-21 1.1E-25 164.8 5.7 168 4-177 177-351 (549)
42 KOG4205 RNA-binding protein mu 99.8 1.6E-19 3.5E-24 150.4 12.0 162 1-177 1-169 (311)
43 PLN03134 glycine-rich RNA-bind 99.8 7.7E-19 1.7E-23 132.3 11.1 82 4-85 32-116 (144)
44 KOG1548 Transcription elongati 99.8 9.7E-18 2.1E-22 136.9 18.2 180 4-183 132-351 (382)
45 KOG0113 U1 small nuclear ribon 99.8 4.4E-17 9.4E-22 130.6 17.4 80 3-82 98-180 (335)
46 KOG0110 RNA-binding protein (R 99.8 7.4E-18 1.6E-22 149.4 14.2 175 4-181 383-595 (725)
47 KOG1190 Polypyrimidine tract-b 99.8 2.4E-17 5.2E-22 137.3 15.6 167 6-174 297-480 (492)
48 KOG4212 RNA-binding protein hn 99.8 6.4E-17 1.4E-21 135.9 16.6 170 5-174 43-284 (608)
49 KOG0121 Nuclear cap-binding pr 99.7 4.2E-18 9.1E-23 119.5 7.2 80 4-83 34-116 (153)
50 KOG4211 Splicing factor hnRNP- 99.7 2.4E-16 5.2E-21 134.6 15.6 161 6-177 10-175 (510)
51 PLN03120 nucleic acid binding 99.7 7.9E-17 1.7E-21 129.6 11.2 79 6-85 4-82 (260)
52 KOG1190 Polypyrimidine tract-b 99.7 4.3E-17 9.4E-22 135.8 8.9 178 3-183 25-225 (492)
53 PF00076 RRM_1: RNA recognitio 99.7 2.9E-17 6.4E-22 108.9 6.3 68 9-76 1-70 (70)
54 KOG0114 Predicted RNA-binding 99.7 1.1E-16 2.4E-21 108.1 8.9 81 2-82 14-94 (124)
55 TIGR01648 hnRNP-R-Q heterogene 99.7 1.4E-16 3E-21 143.9 11.8 127 5-136 232-369 (578)
56 KOG0120 Splicing factor U2AF, 99.7 2.6E-16 5.7E-21 137.7 11.2 182 4-185 287-494 (500)
57 PLN03121 nucleic acid binding 99.7 1.1E-15 2.4E-20 121.0 13.5 81 4-85 3-83 (243)
58 COG0724 RNA-binding proteins ( 99.7 1.1E-15 2.3E-20 129.5 14.5 141 6-146 115-263 (306)
59 KOG0124 Polypyrimidine tract-b 99.7 6.2E-15 1.3E-19 121.5 16.4 75 6-80 210-287 (544)
60 KOG0113 U1 small nuclear ribon 99.7 1.6E-14 3.5E-19 116.0 17.7 71 106-176 99-173 (335)
61 KOG0122 Translation initiation 99.7 7E-16 1.5E-20 120.5 9.3 80 4-83 187-269 (270)
62 KOG0130 RNA-binding protein RB 99.6 1.1E-15 2.3E-20 108.5 6.9 79 6-84 72-153 (170)
63 PF14259 RRM_6: RNA recognitio 99.6 1.1E-15 2.5E-20 101.2 6.6 68 9-76 1-70 (70)
64 PLN03134 glycine-rich RNA-bind 99.6 2.6E-14 5.7E-19 107.7 14.8 73 104-176 30-106 (144)
65 TIGR01659 sex-lethal sex-letha 99.6 4.1E-15 9E-20 127.9 10.9 81 5-85 192-277 (346)
66 KOG1456 Heterogeneous nuclear 99.6 6.2E-14 1.3E-18 115.9 16.9 170 4-175 285-476 (494)
67 KOG0126 Predicted RNA-binding 99.6 1.7E-16 3.7E-21 118.3 0.4 84 4-87 33-119 (219)
68 smart00362 RRM_2 RNA recogniti 99.6 2.3E-14 5E-19 95.0 9.2 70 8-77 1-71 (72)
69 PLN03213 repressor of silencin 99.6 2E-14 4.4E-19 122.9 9.6 78 4-82 8-87 (759)
70 KOG0125 Ataxin 2-binding prote 99.5 2.4E-14 5.2E-19 116.5 8.8 81 4-84 94-175 (376)
71 KOG0111 Cyclophilin-type pepti 99.5 1.1E-14 2.4E-19 111.9 5.6 84 4-87 8-94 (298)
72 KOG0149 Predicted RNA-binding 99.5 2.6E-14 5.7E-19 111.4 7.2 75 7-82 13-90 (247)
73 PF00076 RRM_1: RNA recognitio 99.5 1E-13 2.2E-18 91.7 9.0 66 111-176 1-69 (70)
74 cd00590 RRM RRM (RNA recogniti 99.5 2.1E-13 4.5E-18 90.9 9.3 72 8-79 1-74 (74)
75 smart00360 RRM RNA recognition 99.5 2E-13 4.4E-18 90.1 8.1 67 11-77 1-70 (71)
76 PF13893 RRM_5: RNA recognitio 99.5 1.9E-13 4.2E-18 86.1 7.4 56 23-80 1-56 (56)
77 KOG4212 RNA-binding protein hn 99.5 3.6E-12 7.7E-17 107.7 16.6 75 5-79 214-290 (608)
78 KOG0415 Predicted peptidyl pro 99.5 2.4E-14 5.2E-19 117.6 2.8 81 4-84 237-320 (479)
79 KOG1456 Heterogeneous nuclear 99.5 1.7E-12 3.6E-17 107.6 13.5 166 4-185 29-198 (494)
80 KOG1365 RNA-binding protein Fu 99.4 5.2E-13 1.1E-17 110.9 9.4 175 4-179 159-357 (508)
81 KOG0129 Predicted RNA-binding 99.4 4.7E-12 1E-16 109.4 15.5 158 5-165 258-432 (520)
82 KOG0117 Heterogeneous nuclear 99.4 4.7E-13 1E-17 113.3 7.6 76 7-87 260-335 (506)
83 KOG0114 Predicted RNA-binding 99.4 1.2E-12 2.7E-17 88.7 8.1 75 103-177 13-88 (124)
84 KOG0108 mRNA cleavage and poly 99.4 8.4E-13 1.8E-17 115.3 9.3 78 7-84 19-99 (435)
85 KOG0120 Splicing factor U2AF, 99.4 1.4E-12 3.1E-17 114.5 10.1 172 4-179 173-364 (500)
86 PLN03120 nucleic acid binding 99.4 2.4E-12 5.2E-17 103.9 10.6 69 108-177 4-73 (260)
87 KOG0109 RNA-binding protein LA 99.4 5.1E-13 1.1E-17 107.1 5.6 76 3-83 75-150 (346)
88 KOG0130 RNA-binding protein RB 99.4 2E-12 4.3E-17 92.0 7.8 74 104-177 68-145 (170)
89 KOG4454 RNA binding protein (R 99.4 1E-13 2.3E-18 106.6 1.0 142 4-174 7-153 (267)
90 PF14259 RRM_6: RNA recognitio 99.4 2.8E-12 6E-17 84.8 7.7 65 111-175 1-68 (70)
91 KOG0132 RNA polymerase II C-te 99.4 1.6E-12 3.4E-17 116.9 8.2 79 4-85 419-497 (894)
92 KOG0125 Ataxin 2-binding prote 99.4 6.3E-12 1.4E-16 102.6 10.7 74 104-177 92-167 (376)
93 KOG0105 Alternative splicing f 99.4 9E-12 1.9E-16 93.6 10.5 78 107-188 5-83 (241)
94 KOG0121 Nuclear cap-binding pr 99.3 4.6E-12 9.9E-17 89.4 7.4 77 107-187 35-115 (153)
95 PLN03213 repressor of silencin 99.3 9.3E-12 2E-16 106.8 10.3 71 106-176 8-80 (759)
96 PLN03121 nucleic acid binding 99.3 1.4E-11 3E-16 97.9 10.5 69 107-176 4-73 (243)
97 smart00361 RRM_1 RNA recogniti 99.3 8.2E-12 1.8E-16 82.3 7.3 58 20-77 2-69 (70)
98 KOG0112 Large RNA-binding prot 99.3 1.6E-12 3.6E-17 118.6 5.0 151 4-177 370-522 (975)
99 KOG0415 Predicted peptidyl pro 99.3 1.9E-11 4.1E-16 100.7 9.7 80 101-184 232-315 (479)
100 smart00362 RRM_2 RNA recogniti 99.3 3.8E-11 8.3E-16 79.3 9.4 66 110-175 1-68 (72)
101 KOG0122 Translation initiation 99.3 2E-11 4.2E-16 95.9 8.8 72 105-176 186-261 (270)
102 smart00360 RRM RNA recognition 99.2 1.6E-10 3.4E-15 76.0 8.7 63 113-175 1-67 (71)
103 cd00590 RRM RRM (RNA recogniti 99.2 2.7E-10 5.9E-15 75.5 9.7 67 110-176 1-70 (74)
104 KOG0131 Splicing factor 3b, su 99.2 5.2E-11 1.1E-15 89.4 6.1 72 105-176 6-81 (203)
105 KOG4676 Splicing factor, argin 99.1 5.5E-12 1.2E-16 105.1 -0.2 64 6-71 151-214 (479)
106 KOG0153 Predicted RNA-binding 99.1 2.1E-10 4.5E-15 94.6 8.3 77 3-82 225-302 (377)
107 KOG4208 Nucleolar RNA-binding 99.1 3E-10 6.6E-15 87.2 7.9 80 4-83 47-130 (214)
108 KOG4660 Protein Mei2, essentia 99.1 6E-11 1.3E-15 103.5 4.6 166 3-174 72-240 (549)
109 KOG0126 Predicted RNA-binding 99.1 1.2E-11 2.6E-16 92.7 -0.2 73 108-184 35-111 (219)
110 PF13893 RRM_5: RNA recognitio 99.1 6.3E-10 1.4E-14 69.9 7.8 52 125-177 1-52 (56)
111 KOG4211 Splicing factor hnRNP- 99.1 4.3E-09 9.3E-14 90.8 14.4 174 5-181 102-355 (510)
112 KOG0146 RNA-binding protein ET 99.1 1.7E-10 3.8E-15 91.7 4.8 80 4-83 283-365 (371)
113 KOG0149 Predicted RNA-binding 99.0 7.5E-10 1.6E-14 86.7 7.9 76 105-181 9-88 (247)
114 KOG0533 RRM motif-containing p 99.0 1.1E-09 2.5E-14 88.2 8.7 81 4-84 81-163 (243)
115 KOG0111 Cyclophilin-type pepti 99.0 3.1E-10 6.8E-15 87.7 4.6 70 107-176 9-82 (298)
116 KOG4661 Hsp27-ERE-TATA-binding 99.0 1.2E-09 2.5E-14 95.6 7.7 80 6-85 405-487 (940)
117 PF11608 Limkain-b1: Limkain b 99.0 3.2E-09 7E-14 69.6 7.6 71 7-84 3-78 (90)
118 KOG0128 RNA-binding protein SA 99.0 4.2E-11 9.2E-16 109.1 -1.6 136 5-176 666-807 (881)
119 COG0724 RNA-binding proteins ( 99.0 5.7E-09 1.2E-13 88.1 11.4 69 108-176 115-187 (306)
120 smart00361 RRM_1 RNA recogniti 98.9 5.8E-09 1.3E-13 68.6 7.9 55 122-176 2-67 (70)
121 PF04059 RRM_2: RNA recognitio 98.9 8E-09 1.7E-13 71.4 8.5 75 7-81 2-85 (97)
122 KOG2193 IGF-II mRNA-binding pr 98.9 1.4E-10 2.9E-15 97.9 -0.9 143 7-175 2-148 (584)
123 KOG4210 Nuclear localization s 98.9 2.5E-09 5.3E-14 89.5 6.5 159 5-174 87-254 (285)
124 KOG4205 RNA-binding protein mu 98.9 1.1E-09 2.4E-14 91.9 4.2 82 5-87 96-180 (311)
125 KOG0116 RasGAP SH3 binding pro 98.9 5.2E-09 1.1E-13 91.2 7.1 75 7-82 289-366 (419)
126 KOG0108 mRNA cleavage and poly 98.9 6.2E-09 1.3E-13 91.3 7.6 68 109-176 19-90 (435)
127 KOG0151 Predicted splicing reg 98.8 9.4E-09 2E-13 92.3 8.1 79 4-82 172-256 (877)
128 KOG4209 Splicing factor RNPS1, 98.8 7.5E-09 1.6E-13 83.8 5.8 79 4-83 99-180 (231)
129 KOG4661 Hsp27-ERE-TATA-binding 98.8 3.3E-08 7.2E-13 86.8 9.9 80 105-188 402-485 (940)
130 KOG1365 RNA-binding protein Fu 98.7 3.7E-07 8.1E-12 76.6 12.1 166 4-174 58-233 (508)
131 KOG4206 Spliceosomal protein s 98.7 1.1E-07 2.4E-12 74.5 8.1 69 108-176 9-82 (221)
132 KOG1457 RNA binding protein (c 98.6 5.1E-08 1.1E-12 75.9 4.3 66 4-70 208-273 (284)
133 KOG4307 RNA binding protein RB 98.6 2.5E-07 5.5E-12 83.1 9.0 168 5-174 310-504 (944)
134 KOG0533 RRM motif-containing p 98.6 2.4E-07 5.1E-12 75.0 8.0 74 107-180 82-158 (243)
135 KOG0226 RNA-binding proteins [ 98.6 1.4E-07 3.1E-12 74.8 6.3 154 9-175 99-261 (290)
136 KOG0106 Alternative splicing f 98.6 1.1E-07 2.5E-12 75.1 5.7 63 109-175 2-64 (216)
137 PF08777 RRM_3: RNA binding mo 98.5 3.9E-07 8.4E-12 64.6 6.1 69 7-78 2-75 (105)
138 KOG0153 Predicted RNA-binding 98.5 7E-07 1.5E-11 74.1 8.0 75 100-176 220-295 (377)
139 KOG0132 RNA polymerase II C-te 98.5 7.2E-07 1.6E-11 81.3 8.5 70 105-176 418-487 (894)
140 KOG2416 Acinus (induces apopto 98.5 1.5E-06 3.3E-11 76.9 10.2 75 4-81 442-520 (718)
141 KOG4208 Nucleolar RNA-binding 98.4 9.5E-07 2.1E-11 68.2 7.6 78 103-180 44-126 (214)
142 KOG4454 RNA binding protein (R 98.4 1.2E-07 2.7E-12 73.6 2.4 73 104-176 5-79 (267)
143 KOG0226 RNA-binding proteins [ 98.4 3.3E-07 7.1E-12 72.9 4.7 76 5-80 189-267 (290)
144 KOG0116 RasGAP SH3 binding pro 98.4 3.1E-06 6.8E-11 74.1 9.9 67 107-174 287-357 (419)
145 KOG4660 Protein Mei2, essentia 98.3 6.4E-07 1.4E-11 78.9 4.7 71 105-176 72-142 (549)
146 KOG1548 Transcription elongati 98.3 5E-06 1.1E-10 69.1 9.2 85 103-191 129-224 (382)
147 KOG2202 U2 snRNP splicing fact 98.3 5.8E-07 1.3E-11 71.7 2.9 61 21-81 83-146 (260)
148 KOG0151 Predicted splicing reg 98.2 4.1E-06 8.9E-11 75.8 8.1 73 103-175 169-248 (877)
149 PF11608 Limkain-b1: Limkain b 98.2 1.3E-05 2.8E-10 52.9 7.9 67 109-185 3-74 (90)
150 PF04059 RRM_2: RNA recognitio 98.2 1.7E-05 3.7E-10 54.9 8.9 66 109-174 2-73 (97)
151 KOG1995 Conserved Zn-finger pr 98.2 1.8E-06 3.9E-11 72.2 4.6 81 4-84 64-155 (351)
152 PF08777 RRM_3: RNA binding mo 98.2 3.6E-06 7.8E-11 59.7 5.3 59 109-169 2-60 (105)
153 PF14605 Nup35_RRM_2: Nup53/35 98.2 5.7E-06 1.2E-10 50.7 5.3 53 6-62 1-53 (53)
154 COG5175 MOT2 Transcriptional r 98.1 7.2E-06 1.6E-10 67.9 6.8 76 6-81 114-201 (480)
155 KOG4307 RNA binding protein RB 98.1 2.1E-05 4.6E-10 71.2 8.9 76 4-79 864-943 (944)
156 KOG4849 mRNA cleavage factor I 98.0 7.2E-06 1.6E-10 68.2 4.2 74 7-80 81-159 (498)
157 KOG1855 Predicted RNA-binding 98.0 1.1E-05 2.5E-10 68.9 4.9 73 5-77 230-318 (484)
158 KOG4210 Nuclear localization s 97.9 7.5E-06 1.6E-10 68.8 3.5 80 3-83 181-264 (285)
159 PF05172 Nup35_RRM: Nup53/35/4 97.9 3.3E-05 7.1E-10 53.9 6.0 75 4-80 4-89 (100)
160 KOG4209 Splicing factor RNPS1, 97.9 1.6E-05 3.5E-10 64.5 5.2 72 105-177 98-173 (231)
161 KOG3152 TBP-binding protein, a 97.9 1E-05 2.2E-10 64.6 2.7 70 5-74 73-157 (278)
162 KOG0129 Predicted RNA-binding 97.8 8.6E-05 1.9E-09 65.2 8.1 61 4-64 368-432 (520)
163 KOG2314 Translation initiation 97.8 5.1E-05 1.1E-09 67.2 6.6 74 6-79 58-140 (698)
164 PF14605 Nup35_RRM_2: Nup53/35 97.7 8.9E-05 1.9E-09 45.4 5.2 52 109-163 2-53 (53)
165 KOG0115 RNA-binding protein p5 97.7 0.00011 2.5E-09 58.8 6.6 93 57-175 6-101 (275)
166 KOG0112 Large RNA-binding prot 97.6 0.00011 2.3E-09 68.7 6.4 81 3-86 452-534 (975)
167 KOG4368 Predicted RNA binding 97.6 0.00013 2.8E-09 64.8 6.6 12 218-229 607-618 (757)
168 KOG1996 mRNA splicing factor [ 97.6 0.00015 3.3E-09 59.1 6.3 77 5-81 280-365 (378)
169 COG5175 MOT2 Transcriptional r 97.6 0.00021 4.6E-09 59.5 6.6 72 106-177 112-196 (480)
170 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00034 7.3E-09 48.9 6.7 67 108-176 6-83 (100)
171 PF08675 RNA_bind: RNA binding 97.5 0.00056 1.2E-08 45.2 6.8 56 6-67 9-64 (87)
172 PF08952 DUF1866: Domain of un 97.5 0.00048 1E-08 51.1 7.0 55 22-82 52-106 (146)
173 KOG3152 TBP-binding protein, a 97.4 0.00011 2.3E-09 59.0 2.5 69 107-175 73-157 (278)
174 KOG0128 RNA-binding protein SA 97.4 0.0003 6.5E-09 65.5 5.8 78 6-83 736-815 (881)
175 KOG1996 mRNA splicing factor [ 97.3 0.00083 1.8E-08 55.0 7.1 58 122-179 300-362 (378)
176 KOG2591 c-Mpl binding protein, 97.3 0.00033 7.3E-09 62.1 5.2 70 4-77 173-246 (684)
177 KOG1995 Conserved Zn-finger pr 97.3 0.00037 8E-09 58.7 5.1 72 105-176 63-146 (351)
178 KOG1855 Predicted RNA-binding 97.3 8.4E-05 1.8E-09 63.7 1.4 69 103-171 226-311 (484)
179 KOG2314 Translation initiation 97.3 0.00084 1.8E-08 59.8 7.2 68 107-174 57-133 (698)
180 KOG2202 U2 snRNP splicing fact 97.3 0.00084 1.8E-08 54.1 6.1 59 123-181 83-145 (260)
181 PF15023 DUF4523: Protein of u 97.2 0.0029 6.3E-08 46.3 8.2 74 3-81 83-160 (166)
182 KOG2135 Proteins containing th 97.0 0.00066 1.4E-08 59.1 3.4 77 4-84 370-447 (526)
183 PF08675 RNA_bind: RNA binding 97.0 0.0035 7.6E-08 41.5 5.9 54 109-167 10-63 (87)
184 PF07576 BRAP2: BRCA1-associat 97.0 0.0077 1.7E-07 42.9 8.1 66 6-71 13-80 (110)
185 PF10309 DUF2414: Protein of u 97.0 0.0093 2E-07 37.5 7.5 55 108-166 5-62 (62)
186 PF08952 DUF1866: Domain of un 96.9 0.0066 1.4E-07 45.1 7.9 53 123-180 51-103 (146)
187 KOG2591 c-Mpl binding protein, 96.9 0.0055 1.2E-07 54.7 8.5 91 57-175 149-248 (684)
188 PF10309 DUF2414: Protein of u 96.9 0.0085 1.8E-07 37.7 6.9 54 6-65 5-62 (62)
189 PF03880 DbpA: DbpA RNA bindin 96.9 0.0089 1.9E-07 39.4 7.4 66 8-80 2-74 (74)
190 PF03467 Smg4_UPF3: Smg-4/UPF3 96.8 0.001 2.2E-08 51.9 2.9 80 4-83 5-98 (176)
191 KOG2548 SWAP mRNA splicing reg 96.7 0.0005 1.1E-08 60.5 0.8 7 154-160 235-241 (653)
192 KOG0115 RNA-binding protein p5 96.7 0.0021 4.5E-08 51.8 3.8 73 7-79 32-110 (275)
193 KOG0804 Cytoplasmic Zn-finger 96.6 0.013 2.9E-07 51.1 8.2 67 5-71 73-141 (493)
194 PF04847 Calcipressin: Calcipr 96.4 0.014 3E-07 45.8 6.6 62 19-83 8-71 (184)
195 KOG2253 U1 snRNP complex, subu 96.3 0.0024 5.3E-08 58.1 2.4 70 5-80 39-108 (668)
196 PF10567 Nab6_mRNP_bdg: RNA-re 96.3 0.15 3.3E-06 42.3 12.2 161 6-167 15-212 (309)
197 PF11767 SET_assoc: Histone ly 96.2 0.022 4.7E-07 36.4 5.9 55 17-77 11-65 (66)
198 KOG2068 MOT2 transcription fac 96.2 0.0022 4.9E-08 53.8 1.3 75 7-81 78-161 (327)
199 KOG2416 Acinus (induces apopto 95.9 0.0051 1.1E-07 55.3 2.4 67 104-172 440-507 (718)
200 KOG4285 Mitotic phosphoprotein 95.9 0.034 7.4E-07 46.0 6.9 71 6-81 197-268 (350)
201 KOG4285 Mitotic phosphoprotein 95.8 0.035 7.5E-07 46.0 6.5 64 108-175 197-260 (350)
202 KOG4849 mRNA cleavage factor I 95.7 0.011 2.4E-07 49.8 3.5 69 107-175 79-153 (498)
203 PF07576 BRAP2: BRCA1-associat 95.7 0.16 3.4E-06 36.3 8.8 65 109-173 14-81 (110)
204 KOG4574 RNA-binding protein (c 95.5 0.01 2.3E-07 55.6 2.8 73 9-84 301-375 (1007)
205 PF03467 Smg4_UPF3: Smg-4/UPF3 95.4 0.038 8.3E-07 43.2 5.3 79 107-185 6-97 (176)
206 PF07292 NID: Nmi/IFP 35 domai 95.1 0.031 6.8E-07 37.9 3.5 72 48-130 1-74 (88)
207 KOG2193 IGF-II mRNA-binding pr 94.9 0.00097 2.1E-08 57.3 -5.1 78 6-83 80-157 (584)
208 KOG0804 Cytoplasmic Zn-finger 94.8 0.15 3.3E-06 44.7 7.7 66 108-173 74-142 (493)
209 KOG2888 Putative RNA binding p 94.6 0.022 4.7E-07 47.7 2.0 12 122-133 226-237 (453)
210 PF14111 DUF4283: Domain of un 94.4 0.05 1.1E-06 41.4 3.6 113 17-145 28-142 (153)
211 KOG0835 Cyclin L [General func 93.7 0.13 2.9E-06 43.2 5.0 18 46-63 174-191 (367)
212 KOG4019 Calcineurin-mediated s 93.6 0.57 1.2E-05 36.1 7.7 77 6-85 10-92 (193)
213 KOG2068 MOT2 transcription fac 93.5 0.04 8.6E-07 46.5 1.6 69 108-176 77-155 (327)
214 PF15023 DUF4523: Protein of u 93.5 0.3 6.5E-06 36.1 5.8 62 105-169 83-148 (166)
215 KOG2253 U1 snRNP complex, subu 93.5 0.097 2.1E-06 48.1 4.1 68 104-176 36-103 (668)
216 KOG2318 Uncharacterized conser 93.5 0.46 9.9E-06 43.2 8.1 78 3-80 171-305 (650)
217 KOG0835 Cyclin L [General func 93.0 0.31 6.8E-06 41.1 6.1 10 120-129 213-222 (367)
218 KOG2888 Putative RNA binding p 92.8 0.072 1.6E-06 44.7 2.1 11 122-132 171-181 (453)
219 PF04847 Calcipressin: Calcipr 92.8 0.63 1.4E-05 36.6 7.2 58 121-180 8-67 (184)
220 KOG2135 Proteins containing th 90.9 0.18 3.9E-06 44.6 2.5 65 110-177 374-439 (526)
221 PF03468 XS: XS domain; Inter 88.1 0.38 8.3E-06 34.7 2.1 56 8-63 10-75 (116)
222 KOG4574 RNA-binding protein (c 87.8 0.27 5.9E-06 46.6 1.5 56 115-172 305-360 (1007)
223 KOG4483 Uncharacterized conser 86.6 1.3 2.9E-05 38.4 4.8 59 6-69 391-450 (528)
224 KOG2318 Uncharacterized conser 86.0 6.9 0.00015 36.0 9.0 72 105-176 171-298 (650)
225 KOG4410 5-formyltetrahydrofola 84.8 1.5 3.3E-05 36.3 4.1 48 6-56 330-378 (396)
226 PF03880 DbpA: DbpA RNA bindin 84.6 6.4 0.00014 25.7 6.5 56 117-177 10-70 (74)
227 KOG4008 rRNA processing protei 84.4 0.55 1.2E-05 37.7 1.4 36 4-39 38-73 (261)
228 TIGR03636 L23_arch archaeal ri 83.5 5.9 0.00013 26.2 5.8 57 9-65 16-74 (77)
229 KOG1295 Nonsense-mediated deca 83.5 1.2 2.6E-05 38.6 3.1 67 4-70 5-77 (376)
230 PRK14548 50S ribosomal protein 82.2 6.6 0.00014 26.5 5.7 56 10-65 24-81 (84)
231 KOG2295 C2H2 Zn-finger protein 81.4 0.2 4.4E-06 45.1 -2.2 67 5-71 230-299 (648)
232 PRK14548 50S ribosomal protein 80.9 13 0.00029 25.0 6.9 56 111-166 23-81 (84)
233 TIGR02542 B_forsyth_147 Bacter 80.2 7.2 0.00016 27.7 5.5 112 13-157 10-130 (145)
234 KOG3580 Tight junction protein 79.9 53 0.0012 30.8 12.7 41 104-144 57-98 (1027)
235 PF11767 SET_assoc: Histone ly 78.4 15 0.00032 23.5 6.5 51 119-174 11-61 (66)
236 TIGR03636 L23_arch archaeal ri 77.7 18 0.00038 24.0 6.9 57 110-166 15-74 (77)
237 PF14893 PNMA: PNMA 77.4 3.1 6.8E-05 36.0 3.8 77 2-81 14-95 (331)
238 KOG4213 RNA-binding protein La 77.1 3.5 7.5E-05 31.9 3.4 53 18-71 118-175 (205)
239 KOG2891 Surface glycoprotein [ 76.7 1.3 2.8E-05 36.6 1.2 67 106-172 147-248 (445)
240 KOG4410 5-formyltetrahydrofola 75.0 21 0.00046 29.9 7.6 49 107-156 329-377 (396)
241 COG5638 Uncharacterized conser 75.0 16 0.00035 32.2 7.3 38 3-40 143-185 (622)
242 KOG4483 Uncharacterized conser 73.9 20 0.00044 31.5 7.6 55 108-165 391-446 (528)
243 KOG2187 tRNA uracil-5-methyltr 72.1 12 0.00026 34.2 6.1 72 11-84 30-102 (534)
244 PF11823 DUF3343: Protein of u 72.0 18 0.0004 23.4 5.6 29 46-74 2-30 (73)
245 PTZ00191 60S ribosomal protein 71.8 16 0.00034 27.4 5.7 54 10-63 85-140 (145)
246 KOG4019 Calcineurin-mediated s 71.6 3.3 7.2E-05 32.1 2.2 69 109-179 11-85 (193)
247 KOG2146 Splicing coactivator S 70.5 48 0.001 27.8 8.7 30 49-78 56-86 (354)
248 PF07292 NID: Nmi/IFP 35 domai 69.2 2.6 5.6E-05 28.7 1.1 25 3-27 49-73 (88)
249 PF15513 DUF4651: Domain of un 67.4 15 0.00032 23.1 4.0 21 123-143 9-29 (62)
250 PF02714 DUF221: Domain of unk 65.7 14 0.0003 32.0 5.2 57 48-131 1-57 (325)
251 KOG4246 Predicted DNA-binding 65.1 3.4 7.3E-05 39.6 1.3 27 107-133 144-176 (1194)
252 PTZ00191 60S ribosomal protein 64.7 44 0.00095 25.1 6.8 58 109-166 82-142 (145)
253 PF00403 HMA: Heavy-metal-asso 64.4 31 0.00067 21.2 6.2 54 8-64 1-58 (62)
254 PF09707 Cas_Cas2CT1978: CRISP 63.5 18 0.0004 24.5 4.3 50 4-53 23-72 (86)
255 COG0018 ArgS Arginyl-tRNA synt 63.5 80 0.0017 29.9 9.9 99 20-145 60-167 (577)
256 PF15513 DUF4651: Domain of un 61.9 20 0.00044 22.5 3.9 19 21-39 9-27 (62)
257 KOG1295 Nonsense-mediated deca 61.7 11 0.00023 33.0 3.6 65 109-173 8-79 (376)
258 PF07530 PRE_C2HC: Associated 61.1 30 0.00064 22.2 4.8 59 21-82 2-64 (68)
259 KOG4365 Uncharacterized conser 60.7 1.4 3.1E-05 38.7 -1.7 75 6-81 3-80 (572)
260 PF08544 GHMP_kinases_C: GHMP 56.7 54 0.0012 21.5 6.0 44 122-166 36-79 (85)
261 cd04889 ACT_PDH-BS-like C-term 55.5 43 0.00093 20.0 5.8 42 21-62 13-55 (56)
262 PF03468 XS: XS domain; Inter 54.3 29 0.00063 25.0 4.3 49 108-157 8-67 (116)
263 PRK11558 putative ssRNA endonu 54.1 27 0.00059 24.2 3.9 51 5-55 26-76 (97)
264 CHL00123 rps6 ribosomal protei 53.3 47 0.001 23.0 5.2 51 14-64 14-81 (97)
265 PF03439 Spt5-NGN: Early trans 52.4 35 0.00075 22.9 4.3 35 32-68 33-67 (84)
266 PF10567 Nab6_mRNP_bdg: RNA-re 51.7 41 0.00088 28.4 5.2 58 105-162 12-80 (309)
267 PRK11901 hypothetical protein; 51.4 40 0.00086 29.0 5.3 60 107-170 244-308 (327)
268 PF11411 DNA_ligase_IV: DNA li 50.8 13 0.00028 20.5 1.5 17 16-32 19-35 (36)
269 COG0150 PurM Phosphoribosylami 49.9 7.4 0.00016 33.5 0.8 48 20-68 275-322 (345)
270 COG5227 SMT3 Ubiquitin-like pr 49.7 60 0.0013 22.1 4.8 65 2-67 30-100 (103)
271 PF15063 TC1: Thyroid cancer p 49.6 12 0.00025 24.4 1.5 24 10-33 29-52 (79)
272 KOG2891 Surface glycoprotein [ 49.3 31 0.00066 28.8 4.2 36 4-39 147-194 (445)
273 COG0445 GidA Flavin-dependent 49.1 76 0.0016 29.7 7.0 93 46-143 237-336 (621)
274 PRK10629 EnvZ/OmpR regulon mod 49.0 1E+02 0.0023 22.6 8.2 70 6-80 35-108 (127)
275 PF08544 GHMP_kinases_C: GHMP 49.0 74 0.0016 20.8 6.2 43 21-65 37-79 (85)
276 smart00596 PRE_C2HC PRE_C2HC d 48.7 54 0.0012 21.1 4.4 49 123-174 2-55 (69)
277 PF08734 GYD: GYD domain; Int 48.4 86 0.0019 21.4 5.9 45 122-166 22-67 (91)
278 PF09869 DUF2096: Uncharacteri 47.5 82 0.0018 24.2 5.9 51 8-66 114-164 (169)
279 PF05189 RTC_insert: RNA 3'-te 47.2 35 0.00075 23.9 3.8 47 8-54 12-66 (103)
280 KOG2295 C2H2 Zn-finger protein 46.2 4.5 9.8E-05 36.9 -1.0 72 105-176 228-303 (648)
281 PRK11901 hypothetical protein; 46.1 68 0.0015 27.7 5.8 57 7-68 246-307 (327)
282 PF02829 3H: 3H domain; Inter 46.0 55 0.0012 22.8 4.5 51 17-67 8-58 (98)
283 KOG0156 Cytochrome P450 CYP2 s 44.0 55 0.0012 30.3 5.5 59 10-75 36-97 (489)
284 PF01071 GARS_A: Phosphoribosy 43.7 90 0.002 24.9 6.0 61 18-79 24-87 (194)
285 PF08156 NOP5NT: NOP5NT (NUC12 43.7 7.7 0.00017 24.9 0.0 38 21-65 27-64 (67)
286 PRK08559 nusG transcription an 43.6 1E+02 0.0023 23.3 6.2 33 33-67 36-68 (153)
287 COG5193 LHP1 La protein, small 41.8 14 0.0003 32.6 1.2 58 6-63 174-244 (438)
288 TIGR01873 cas_CT1978 CRISPR-as 41.6 56 0.0012 22.2 3.9 50 5-54 24-74 (87)
289 PF14111 DUF4283: Domain of un 41.3 24 0.00052 26.4 2.4 35 7-41 105-140 (153)
290 COG3254 Uncharacterized conser 40.9 1.3E+02 0.0028 21.2 5.6 43 21-63 27-69 (105)
291 TIGR00405 L26e_arch ribosomal 39.9 1.2E+02 0.0026 22.6 6.0 27 41-67 34-60 (145)
292 PF03389 MobA_MobL: MobA/MobL 39.7 46 0.001 27.0 3.9 47 10-56 71-125 (216)
293 PF09902 DUF2129: Uncharacteri 39.6 88 0.0019 20.3 4.4 39 26-70 16-54 (71)
294 COG0030 KsgA Dimethyladenosine 39.4 44 0.00095 28.0 3.8 27 7-33 96-122 (259)
295 PF12829 Mhr1: Transcriptional 38.3 74 0.0016 21.8 4.1 53 13-66 19-72 (91)
296 PF11491 DUF3213: Protein of u 37.8 1.2E+02 0.0027 20.2 4.9 67 8-78 2-72 (88)
297 KOG2854 Possible pfkB family c 37.6 1.2E+02 0.0027 26.3 6.1 50 3-53 78-127 (343)
298 COG3227 LasB Zinc metalloprote 37.3 2E+02 0.0043 26.4 7.6 61 15-84 48-109 (507)
299 KOG3702 Nuclear polyadenylated 36.8 21 0.00046 33.5 1.7 71 8-79 513-586 (681)
300 PRK08559 nusG transcription an 36.6 1.8E+02 0.0038 22.1 6.5 44 124-168 24-68 (153)
301 PF14026 DUF4242: Protein of u 36.4 1.3E+02 0.0027 19.9 8.3 60 111-171 3-71 (77)
302 COG4130 Predicted sugar epimer 35.9 1.9E+02 0.0041 23.5 6.5 43 123-170 125-167 (272)
303 COG2608 CopZ Copper chaperone 35.7 1.2E+02 0.0026 19.4 5.1 46 6-54 3-48 (71)
304 PF05036 SPOR: Sporulation rel 35.1 14 0.00031 23.6 0.3 58 8-66 6-65 (76)
305 PRK11230 glycolate oxidase sub 35.0 1.3E+02 0.0028 28.0 6.5 49 18-66 201-255 (499)
306 KOG4008 rRNA processing protei 34.8 27 0.00058 28.4 1.7 32 109-140 41-72 (261)
307 PRK02886 hypothetical protein; 34.5 1.1E+02 0.0024 20.8 4.4 38 27-70 21-58 (87)
308 PF08442 ATP-grasp_2: ATP-gras 34.4 83 0.0018 25.2 4.5 54 18-71 25-81 (202)
309 cd06404 PB1_aPKC PB1 domain is 34.3 1.5E+02 0.0032 20.0 7.1 53 8-65 10-68 (83)
310 PRK10905 cell division protein 34.1 1.7E+02 0.0036 25.3 6.3 59 108-169 247-309 (328)
311 PRK02302 hypothetical protein; 33.8 1.1E+02 0.0025 20.8 4.4 38 27-70 23-60 (89)
312 COG0002 ArgC Acetylglutamate s 33.6 1.1E+02 0.0025 26.7 5.5 48 8-56 248-304 (349)
313 cd04879 ACT_3PGDH-like ACT_3PG 33.0 1.2E+02 0.0025 18.5 5.3 32 9-40 2-34 (71)
314 PF00398 RrnaAD: Ribosomal RNA 32.4 34 0.00074 28.6 2.2 24 5-28 96-119 (262)
315 COG4010 Uncharacterized protei 31.7 1.5E+02 0.0034 22.2 5.0 46 13-65 118-163 (170)
316 COG0150 PurM Phosphoribosylami 31.6 16 0.00035 31.5 0.1 49 121-169 274-322 (345)
317 COG3254 Uncharacterized conser 31.5 1.9E+02 0.0041 20.4 5.6 42 122-163 26-68 (105)
318 PF06014 DUF910: Bacterial pro 31.5 40 0.00087 21.2 1.8 18 19-36 3-20 (62)
319 PRK05738 rplW 50S ribosomal pr 30.9 1.3E+02 0.0028 20.6 4.5 29 10-38 23-53 (92)
320 cd00187 TOP4c DNA Topoisomeras 30.5 3.6E+02 0.0078 24.7 8.3 22 7-28 226-247 (445)
321 PRK09631 DNA topoisomerase IV 29.4 5.3E+02 0.011 24.9 9.9 60 6-66 220-283 (635)
322 PHA03075 glutaredoxin-like pro 29.3 1E+02 0.0022 22.2 3.7 31 23-53 59-89 (123)
323 PF14714 KH_dom-like: KH-domai 28.9 1.6E+02 0.0035 19.5 4.5 50 70-139 22-78 (80)
324 COG5507 Uncharacterized conser 28.8 90 0.002 21.6 3.2 19 148-166 68-86 (117)
325 PF12829 Mhr1: Transcriptional 28.4 1.2E+02 0.0026 20.8 3.8 52 116-167 20-72 (91)
326 PF07237 DUF1428: Protein of u 28.1 2.2E+02 0.0047 20.1 5.6 44 123-166 23-85 (103)
327 PHA01632 hypothetical protein 28.0 63 0.0014 19.6 2.1 21 9-29 19-39 (64)
328 PF10915 DUF2709: Protein of u 27.7 1.4E+02 0.0029 23.7 4.4 63 50-133 47-117 (238)
329 PF13689 DUF4154: Domain of un 27.5 2.6E+02 0.0057 20.8 9.0 60 20-81 2-61 (145)
330 cd04909 ACT_PDH-BS C-terminal 27.3 1.6E+02 0.0035 18.2 5.5 47 19-65 14-62 (69)
331 PF14893 PNMA: PNMA 27.3 50 0.0011 28.7 2.3 24 108-131 18-41 (331)
332 KOG1888 Putative phosphoinosit 26.1 2E+02 0.0043 28.3 6.0 63 9-75 312-378 (868)
333 KOG4213 RNA-binding protein La 26.0 1.9E+02 0.0041 22.7 4.9 46 120-165 118-169 (205)
334 COG5353 Uncharacterized protei 26.0 2.9E+02 0.0064 20.9 6.0 53 5-57 86-154 (161)
335 COG0045 SucC Succinyl-CoA synt 26.0 3.8E+02 0.0083 23.9 7.3 64 18-81 26-96 (387)
336 PF07521 RMMBL: RNA-metabolisi 25.9 1.4E+02 0.003 17.0 3.6 32 6-38 6-37 (43)
337 COG5584 Predicted small secret 25.5 67 0.0015 22.1 2.2 27 13-39 29-55 (103)
338 PF06919 Phage_T4_Gp30_7: Phag 25.4 1.1E+02 0.0023 21.4 3.2 24 131-156 28-51 (121)
339 PRK05192 tRNA uridine 5-carbox 25.4 81 0.0017 30.1 3.5 39 3-41 298-336 (618)
340 cd04908 ACT_Bt0572_1 N-termina 25.3 1.7E+02 0.0038 18.0 8.6 44 121-164 14-58 (66)
341 PF09383 NIL: NIL domain; Int 25.1 1.3E+02 0.0029 19.3 3.6 53 15-67 11-68 (76)
342 TIGR00755 ksgA dimethyladenosi 25.0 79 0.0017 26.2 3.1 24 8-31 96-119 (253)
343 TIGR01061 parC_Gpos DNA topois 25.0 6.8E+02 0.015 24.8 10.1 57 109-165 249-311 (738)
344 PRK11634 ATP-dependent RNA hel 25.0 1.4E+02 0.0029 28.8 5.0 67 8-81 488-561 (629)
345 PRK12758 DNA topoisomerase IV 24.5 7.1E+02 0.015 25.1 9.5 60 5-65 240-303 (869)
346 cd00027 BRCT Breast Cancer Sup 24.5 1.7E+02 0.0036 17.5 5.3 46 7-57 2-47 (72)
347 KOG1999 RNA polymerase II tran 24.4 2E+02 0.0044 28.9 5.8 30 42-71 207-236 (1024)
348 cd04903 ACT_LSD C-terminal ACT 24.0 1.8E+02 0.0039 17.7 7.0 47 19-66 12-60 (71)
349 PHA02592 52 DNA topisomerase I 23.9 5E+02 0.011 23.8 8.0 51 6-59 227-281 (439)
350 cd04882 ACT_Bt0572_2 C-termina 23.6 1.8E+02 0.0039 17.5 5.2 43 21-63 14-58 (65)
351 smart00195 DSPc Dual specifici 23.6 2.6E+02 0.0057 20.2 5.5 45 7-53 6-51 (138)
352 TIGR00387 glcD glycolate oxida 23.3 1.9E+02 0.0041 26.0 5.4 51 16-66 142-198 (413)
353 PF11061 DUF2862: Protein of u 22.9 1.6E+02 0.0036 18.7 3.4 31 21-54 18-51 (64)
354 PRK05772 translation initiatio 22.7 2.5E+02 0.0054 24.9 5.7 47 18-66 3-57 (363)
355 COG0090 RplB Ribosomal protein 22.7 92 0.002 26.0 2.9 32 104-135 123-154 (275)
356 PF11910 NdhO: Cyanobacterial 22.2 62 0.0014 20.5 1.4 22 26-54 31-52 (67)
357 PF08206 OB_RNB: Ribonuclease 22.2 46 0.00099 20.4 0.9 37 44-81 7-44 (58)
358 PF04127 DFP: DNA / pantothena 21.8 2E+02 0.0043 22.6 4.6 57 9-65 21-79 (185)
359 PRK00274 ksgA 16S ribosomal RN 21.7 1.1E+02 0.0023 25.8 3.3 22 8-29 107-128 (272)
360 KOG4246 Predicted DNA-binding 21.7 86 0.0019 30.7 2.9 17 44-60 58-74 (1194)
361 PTZ00338 dimethyladenosine tra 21.6 1E+02 0.0022 26.3 3.2 22 8-29 103-124 (294)
362 TIGR01639 P_fal_TIGR01639 Plas 21.2 46 0.00099 20.8 0.7 24 13-36 5-28 (61)
363 COG1160 Predicted GTPases [Gen 21.0 5.1E+02 0.011 23.7 7.3 60 65-144 372-439 (444)
364 smart00738 NGN In Spt5p, this 20.9 1.6E+02 0.0035 20.2 3.6 25 44-68 58-82 (106)
365 PRK15464 cold shock-like prote 20.8 69 0.0015 20.7 1.5 11 44-54 15-25 (70)
366 PLN02286 arginine-tRNA ligase 20.6 7.4E+02 0.016 23.6 10.1 52 71-145 115-167 (576)
367 PF14097 SpoVAE: Stage V sporu 20.3 4.2E+02 0.0092 20.6 6.5 78 56-173 10-87 (180)
368 cd06408 PB1_NoxR The PB1 domai 20.2 2.7E+02 0.0058 18.9 4.3 52 10-64 14-66 (86)
369 PRK12450 foldase protein PrsA; 20.2 2E+02 0.0044 24.7 4.7 39 17-66 132-170 (309)
370 PRK09630 DNA topoisomerase IV 20.0 7E+02 0.015 23.0 8.5 61 5-66 219-283 (479)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1e-32 Score=236.16 Aligned_cols=163 Identities=26% Similarity=0.407 Sum_probs=141.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
...++|||+|||+++|+++|+++|..||+|+.|+|.. ++.++|||||+|.++++|..||..||+..|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 4678999999999999999999999999999999954 4678899999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecCh
Q 022301 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNY 156 (299)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~ 156 (299)
..... ....++|||.|||..+++++|+++|.+||.|..+.|+.+..+ +||||+|.+.
T Consensus 185 ~p~~~-------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~ 245 (346)
T TIGR01659 185 RPGGE-------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKR 245 (346)
T ss_pred ccccc-------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCH
Confidence 54221 123468999999999999999999999999999999988643 5999999999
Q ss_pred hhHHHHHHhcCCCeecCceeeEEEEeccc
Q 022301 157 DDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (299)
Q Consensus 157 ~~a~~a~~~l~g~~~~g~~~~~~~~~~~~ 185 (299)
++|++||+.||+..+.+......+.+...
T Consensus 246 e~A~~Ai~~lng~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 246 EEAQEAISALNNVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred HHHHHHHHHhCCCccCCCceeEEEEECCc
Confidence 99999999999999988644444444433
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=8e-30 Score=229.24 Aligned_cols=169 Identities=22% Similarity=0.356 Sum_probs=141.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
..++|||+|||+++++++|.++|..||+|..|.|.. +++++|||||+|.+.++|..|+..|||..|.|+.|.|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 468999999999999999999999999999999954 47889999999999999999999999999999999998643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChh
Q 022301 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYD 157 (299)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~ 157 (299)
........ ............+|||+||+..+++++|+++|+.||.|..+.+..++. .|||||+|.+.+
T Consensus 186 ~~p~a~~~--------~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e 257 (612)
T TIGR01645 186 NMPQAQPI--------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ 257 (612)
T ss_pred cccccccc--------cccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHH
Confidence 22110000 000011222457999999999999999999999999999999998754 469999999999
Q ss_pred hHHHHHHhcCCCeecCceeeEEEEeccc
Q 022301 158 DMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (299)
Q Consensus 158 ~a~~a~~~l~g~~~~g~~~~~~~~~~~~ 185 (299)
+|..|++.|||..|+|+ .+.|...
T Consensus 258 ~A~kAI~amNg~elgGr----~LrV~kA 281 (612)
T TIGR01645 258 SQSEAIASMNLFDLGGQ----YLRVGKC 281 (612)
T ss_pred HHHHHHHHhCCCeeCCe----EEEEEec
Confidence 99999999999999999 5555443
No 3
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=5.9e-29 Score=184.84 Aligned_cols=187 Identities=62% Similarity=1.049 Sum_probs=160.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 1 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 1 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
|+.+.+++|||+|||.++.+.+|++||-+||.|.+|.|+....+..||||+|+++.+|+.||..-+|-.++|..|.|+++
T Consensus 1 ~~gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 1 MSGRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred CCCcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 78899999999999999999999999999999999999877777789999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCC-------CCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEe
Q 022301 81 HGGRGRSSSDRH-------SSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDY 153 (299)
Q Consensus 81 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f 153 (299)
............ .........++.....+.+.|.+||...++++|+++|.+.|.|+...+..+. ++.|+|
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg---~GvV~~ 157 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG---VGVVEY 157 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc---ceeeee
Confidence 876522111110 0111112345677788999999999999999999999999999999999885 899999
Q ss_pred cChhhHHHHHHhcCCCeecCceeeEEEEecccccCCC
Q 022301 154 TNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHRRD 190 (299)
Q Consensus 154 ~~~~~a~~a~~~l~g~~~~g~~~~~~~~~~~~~~~~~ 190 (299)
...++.+.|+.+|+...+...-.+++|.+........
T Consensus 158 ~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~~~~~~ 194 (241)
T KOG0105|consen 158 LRKEDMKYAVRKLDDQKFRSEGETAYIRVRGDENRDQ 194 (241)
T ss_pred eehhhHHHHHHhhccccccCcCcEeeEEecccCCCcc
Confidence 9999999999999999998877888998877655543
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.3e-29 Score=221.84 Aligned_cols=153 Identities=24% Similarity=0.426 Sum_probs=137.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
+.++|||+|||.++|+++|+++|+.||+|.+|.|.. ++.++|||||+|.+.++|+.||..|||..|.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 578999999999999999999999999999999954 46788999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCC----CCCEEEEEecChh
Q 022301 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYD 157 (299)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~----~~~~~fv~f~~~~ 157 (299)
+... .....+|||+|||..+++++|.++|..||.|..+.++.+. ..|||||+|.+.+
T Consensus 82 ~~~~-------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~ 142 (352)
T TIGR01661 82 PSSD-------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRD 142 (352)
T ss_pred cccc-------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHH
Confidence 4321 1234689999999999999999999999999999988764 3469999999999
Q ss_pred hHHHHHHhcCCCeecCcee
Q 022301 158 DMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 158 ~a~~a~~~l~g~~~~g~~~ 176 (299)
+|+.|++.|||..+.|...
T Consensus 143 ~A~~ai~~l~g~~~~g~~~ 161 (352)
T TIGR01661 143 EADRAIKTLNGTTPSGCTE 161 (352)
T ss_pred HHHHHHHHhCCCccCCCce
Confidence 9999999999999988654
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=4.9e-29 Score=225.34 Aligned_cols=166 Identities=21% Similarity=0.317 Sum_probs=140.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.+.++|||+|||..+++++|+++|..||+|.+|.|+. ++.++|||||+|.+.++|.+||. |+|..|.|.+|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 4678999999999999999999999999999999965 46789999999999999999998 9999999999999887
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecCh
Q 022301 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNY 156 (299)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~ 156 (299)
............. .....+...+|||+|||..+++++|.++|..||.|..|.++.+..+ |||||+|.+.
T Consensus 166 ~~~~~~~~~~~~~-------~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~ 238 (457)
T TIGR01622 166 QAEKNRAAKAATH-------QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDA 238 (457)
T ss_pred chhhhhhhhcccc-------cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCH
Confidence 5433221110000 0011123689999999999999999999999999999999987654 6999999999
Q ss_pred hhHHHHHHhcCCCeecCceee
Q 022301 157 DDMKHAIKKLDDSEFRNAFSR 177 (299)
Q Consensus 157 ~~a~~a~~~l~g~~~~g~~~~ 177 (299)
++|..|+..|+|..|.|+.+.
T Consensus 239 e~A~~A~~~l~g~~i~g~~i~ 259 (457)
T TIGR01622 239 EEAKEALEVMNGFELAGRPIK 259 (457)
T ss_pred HHHHHHHHhcCCcEECCEEEE
Confidence 999999999999999998543
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=2.7e-28 Score=213.50 Aligned_cols=172 Identities=24% Similarity=0.352 Sum_probs=136.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCC--ceEEEEE
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVEL 79 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g--~~i~v~~ 79 (299)
..++|||+|||.++++++|.++|..||.|..+.+.. ++.++|||||+|.+.++|..|+..|||..+.| .+|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999999854 35678999999999999999999999998877 5788888
Q ss_pred ccCCCCCCCC--------------CC-CCC-----------------C--------------------------CCC-C-
Q 022301 80 AHGGRGRSSS--------------DR-HSS-----------------H--------------------------SSG-R- 99 (299)
Q Consensus 80 ~~~~~~~~~~--------------~~-~~~-----------------~--------------------------~~~-~- 99 (299)
+......... .. ... . ... .
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 7533310000 00 000 0 000 0
Q ss_pred -------------CCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCC----CCCEEEEEecChhhHHHH
Q 022301 100 -------------GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHA 162 (299)
Q Consensus 100 -------------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~----~~~~~fv~f~~~~~a~~a 162 (299)
........+.+|||+|||..+++++|.++|.+||.|..+.|+.+. ..|||||+|.+.++|..|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 000001234479999999999999999999999999999999886 346999999999999999
Q ss_pred HHhcCCCeecCcee
Q 022301 163 IKKLDDSEFRNAFS 176 (299)
Q Consensus 163 ~~~l~g~~~~g~~~ 176 (299)
|..|||..|+|+.+
T Consensus 328 i~~lnG~~~~gr~i 341 (352)
T TIGR01661 328 ILSLNGYTLGNRVL 341 (352)
T ss_pred HHHhCCCEECCeEE
Confidence 99999999999944
No 7
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.4e-29 Score=197.62 Aligned_cols=166 Identities=20% Similarity=0.349 Sum_probs=142.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCCC
Q 022301 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (299)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 84 (299)
-|||+.|.+.++-|+|++.|.+||+|.+++|.. +++++||+||-|.+.++|+.||..|||.+|.++.|..+|+.-+.
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 489999999999999999999999999999944 57999999999999999999999999999999999999997554
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHH
Q 022301 85 GRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIK 164 (299)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~ 164 (299)
....... ..-+....-..+.++++||+|++..+++++|++.|..||.|..|.+++++. |+||.|++.|.|..||.
T Consensus 144 ~e~n~~~---ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qG--YaFVrF~tkEaAahAIv 218 (321)
T KOG0148|consen 144 SEMNGKP---LTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQG--YAFVRFETKEAAAHAIV 218 (321)
T ss_pred cccCCCC---ccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccc--eEEEEecchhhHHHHHH
Confidence 1111100 000111223456789999999999999999999999999999999998875 99999999999999999
Q ss_pred hcCCCeecCceeeE
Q 022301 165 KLDDSEFRNAFSRA 178 (299)
Q Consensus 165 ~l~g~~~~g~~~~~ 178 (299)
.+||.+|.|+.+..
T Consensus 219 ~mNntei~G~~VkC 232 (321)
T KOG0148|consen 219 QMNNTEIGGQLVRC 232 (321)
T ss_pred HhcCceeCceEEEE
Confidence 99999999986643
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=2.7e-28 Score=220.24 Aligned_cols=162 Identities=17% Similarity=0.231 Sum_probs=136.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhc--CCCCCCCceEEEEEccC
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR--DGYDFDGHRLRVELAHG 82 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l--~~~~~~g~~i~v~~~~~ 82 (299)
|+++|||+|||+++|+++|.++|+.||+|..|.|.. .++||||+|.+.++|+.|+..| ++..|.|+.|.|.|+..
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~---~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP---GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC---CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 689999999999999999999999999999999973 4689999999999999999864 77899999999999875
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHH
Q 022301 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHA 162 (299)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a 162 (299)
........ . . ...........|+|.||+..+++++|.++|..||.|..|.++.+...++|||+|.+.++|.+|
T Consensus 78 ~~~~~~~~----~--~-~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A 150 (481)
T TIGR01649 78 QEIKRDGN----S--D-FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHA 150 (481)
T ss_pred cccccCCC----C--c-ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHH
Confidence 43211110 0 0 000111234579999999999999999999999999999998887767999999999999999
Q ss_pred HHhcCCCeecCcee
Q 022301 163 IKKLDDSEFRNAFS 176 (299)
Q Consensus 163 ~~~l~g~~~~g~~~ 176 (299)
++.|||..|.|...
T Consensus 151 ~~~Lng~~i~~~~~ 164 (481)
T TIGR01649 151 KAALNGADIYNGCC 164 (481)
T ss_pred HHHhcCCcccCCce
Confidence 99999999977543
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=7.1e-28 Score=222.67 Aligned_cols=152 Identities=25% Similarity=0.425 Sum_probs=134.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCCC
Q 022301 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (299)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 84 (299)
+|||+|||+++|+++|.++|..||+|..|.|.. ++.++|||||+|.+.++|..|+..||+..|.|+.|.|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 799999999999999999999999999999955 36788999999999999999999999999999999999975322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC---CCEEEEEecChhhHHH
Q 022301 85 GRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKH 161 (299)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~---~~~~fv~f~~~~~a~~ 161 (299)
. .......+|||+|||.++++++|.++|+.||.|..|.+..+.. .|||||+|.+.++|..
T Consensus 82 ~-----------------~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~ 144 (562)
T TIGR01628 82 S-----------------LRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKA 144 (562)
T ss_pred c-----------------ccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHH
Confidence 1 0111235799999999999999999999999999999988754 4799999999999999
Q ss_pred HHHhcCCCeecCcee
Q 022301 162 AIKKLDDSEFRNAFS 176 (299)
Q Consensus 162 a~~~l~g~~~~g~~~ 176 (299)
|++.|+|..+.|+.+
T Consensus 145 Ai~~lng~~~~~~~i 159 (562)
T TIGR01628 145 AIQKVNGMLLNDKEV 159 (562)
T ss_pred HHHHhcccEecCceE
Confidence 999999999999843
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=3.4e-27 Score=213.10 Aligned_cols=170 Identities=18% Similarity=0.263 Sum_probs=136.4
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 4 RASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 4 ~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
.++++|||+|||+ .+|+++|.++|+.||.|..|+|..+. +|||||+|.+.++|..|+..|||..|.|+.|.|.+++.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~--~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK--KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 4678999999998 69999999999999999999997653 68999999999999999999999999999999999865
Q ss_pred CCCCCCCCCC--------CCCCCC--CCC--------CCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCC--eeEEEEEe
Q 022301 83 GRGRSSSDRH--------SSHSSG--RGR--------GVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFR 142 (299)
Q Consensus 83 ~~~~~~~~~~--------~~~~~~--~~~--------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~--v~~~~~~~ 142 (299)
.......... ..+... ... .....+..+|||.|||..+++++|+++|..||. |..+.+..
T Consensus 351 ~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~ 430 (481)
T TIGR01649 351 QNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFP 430 (481)
T ss_pred ccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEec
Confidence 4322111000 000000 000 011245678999999999999999999999998 77777765
Q ss_pred CC--CCCEEEEEecChhhHHHHHHhcCCCeecCce
Q 022301 143 DG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (299)
Q Consensus 143 ~~--~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (299)
.. ..++|||+|.+.++|..|+..|||..|.++.
T Consensus 431 ~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~ 465 (481)
T TIGR01649 431 KDNERSKMGLLEWESVEDAVEALIALNHHQLNEPN 465 (481)
T ss_pred CCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCC
Confidence 43 2369999999999999999999999999874
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=4.6e-27 Score=215.33 Aligned_cols=170 Identities=20% Similarity=0.304 Sum_probs=132.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhc------------CCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCC
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKY------------GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~------------G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~ 70 (299)
+...++|||+|||+.+|+++|.++|..| +.|..+.+. ..+|||||+|.+.++|..||. |||+.|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~---~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN---KEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC---CCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 3567899999999999999999999975 345555554 457999999999999999996 999999
Q ss_pred CCceEEEEEccCCCCCCCCCCCCCC------CCC----CCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Q 022301 71 DGHRLRVELAHGGRGRSSSDRHSSH------SSG----RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQV 140 (299)
Q Consensus 71 ~g~~i~v~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~ 140 (299)
.|..|.|.........+........ ... ...........+|||+|||..+++++|.++|+.||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 9999999765433311110000000 000 011112335679999999999999999999999999999999
Q ss_pred EeCC----CCCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 141 FRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 141 ~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
+.+. ..|||||+|.+.++|..|++.|+|..|.|..+
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l 367 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKL 367 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 8775 34699999999999999999999999999854
No 12
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=2e-27 Score=198.94 Aligned_cols=178 Identities=22% Similarity=0.290 Sum_probs=140.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCCCCC-CceEEEEEcc
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAH 81 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~~~~~~-g~~i~v~~~~ 81 (299)
-|-|||+.||.++.|++|..||+..|+|-++.|+++ |.++|||||.|.+.++|++|++.||+..|. |+.|.|..+.
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 478999999999999999999999999999999665 789999999999999999999999999885 8888887654
Q ss_pred CCCCC---------------------------------CCC---------------------------CCCCCCCCC---
Q 022301 82 GGRGR---------------------------------SSS---------------------------DRHSSHSSG--- 98 (299)
Q Consensus 82 ~~~~~---------------------------------~~~---------------------------~~~~~~~~~--- 98 (299)
.+... +.. .....+...
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV 242 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV 242 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee
Confidence 22110 000 000000000
Q ss_pred ----C---CCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCee
Q 022301 99 ----R---GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171 (299)
Q Consensus 99 ----~---~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~ 171 (299)
. ........-..|||.||+..+|++.|+++|.+||.|..|+.+.| ||||+|.+.++|.+|++.+||++|
T Consensus 243 dWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkel 318 (506)
T KOG0117|consen 243 DWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKEL 318 (506)
T ss_pred eccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCcee
Confidence 0 01112224467999999999999999999999999999999987 999999999999999999999999
Q ss_pred cCceeeEEEEeccccc
Q 022301 172 RNAFSRAYVRVREYDH 187 (299)
Q Consensus 172 ~g~~~~~~~~~~~~~~ 187 (299)
+|..+++.+.....+.
T Consensus 319 dG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 319 DGSPIEVTLAKPVDKK 334 (506)
T ss_pred cCceEEEEecCChhhh
Confidence 9997766555444333
No 13
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=6.1e-27 Score=210.48 Aligned_cols=167 Identities=22% Similarity=0.340 Sum_probs=129.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCCCCC-CceEEEEEccC
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAHG 82 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~-g~~i~v~~~~~ 82 (299)
.++|||+|||.++++++|.++|..||+|.+|+|+. ++.++|||||+|.+.++|++||..||+..|. |+.|.|.++..
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~ 137 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD 137 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc
Confidence 58999999999999999999999999999999965 4788999999999999999999999998875 66665554321
Q ss_pred CCCC-------------------C---------------CCCCCCC-------------------CCCC-----------
Q 022301 83 GRGR-------------------S---------------SSDRHSS-------------------HSSG----------- 98 (299)
Q Consensus 83 ~~~~-------------------~---------------~~~~~~~-------------------~~~~----------- 98 (299)
.... . ....... ....
T Consensus 138 ~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~Vd 217 (578)
T TIGR01648 138 NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVD 217 (578)
T ss_pred CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEE
Confidence 1000 0 0000000 0000
Q ss_pred ---CC---CCCCCCCccEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCe
Q 022301 99 ---RG---RGVSRRSEYRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE 170 (299)
Q Consensus 99 ---~~---~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~ 170 (299)
.. .........+|||+||+..+++++|+++|..| |.|..|.++.+ ||||+|.+.++|++|++.|||..
T Consensus 218 wA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg----fAFVeF~s~e~A~kAi~~lnG~~ 293 (578)
T TIGR01648 218 WAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD----YAFVHFEDREDAVKAMDELNGKE 293 (578)
T ss_pred eecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC----eEEEEeCCHHHHHHHHHHhCCCE
Confidence 00 00011234689999999999999999999999 99999988754 99999999999999999999999
Q ss_pred ecCcee
Q 022301 171 FRNAFS 176 (299)
Q Consensus 171 ~~g~~~ 176 (299)
|+|+.+
T Consensus 294 i~Gr~I 299 (578)
T TIGR01648 294 LEGSEI 299 (578)
T ss_pred ECCEEE
Confidence 999944
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=1.3e-26 Score=212.33 Aligned_cols=174 Identities=19% Similarity=0.340 Sum_probs=136.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.+.++|||+|||..+|+++|.++|..||.|..+.|.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3468999999999999999999999999999999854 4778999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCC------CCCCC---CCCCCCCCccEEEEeCCCCCC----------CHHHHHHHHHhcCCeeEEEEE
Q 022301 81 HGGRGRSSSDRHSS------HSSGR---GRGVSRRSEYRVLVTGLPSSA----------SWQDLKDHMRRAGDVCFSQVF 141 (299)
Q Consensus 81 ~~~~~~~~~~~~~~------~~~~~---~~~~~~~~~~~l~v~nl~~~~----------~~~~l~~~f~~~G~v~~~~~~ 141 (299)
.............. ..... .......+..+|+|.||.... ..++|+++|.+||.|..|.|+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 75543322111110 00000 011123356788999985421 236899999999999999998
Q ss_pred eCC-------CCCEEEEEecChhhHHHHHHhcCCCeecCceee
Q 022301 142 RDG-------SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (299)
Q Consensus 142 ~~~-------~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (299)
.+. ..|+|||+|.+.++|++|+..|||..|+|+.+.
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~ 495 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVV 495 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 652 236999999999999999999999999998553
No 15
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.95 E-value=9.6e-28 Score=190.50 Aligned_cols=145 Identities=28% Similarity=0.531 Sum_probs=134.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCCCCC
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~ 86 (299)
-.|||+|||.++++.+|+.||++||+|.+|.|. ++||||..++...|..||..|||-.|.|..|+|+.++.+..
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk- 76 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK- 76 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----cccceEEeecccccHHHHhhcccceecceEEEEEeccccCC-
Confidence 479999999999999999999999999999998 77999999999999999999999999999999999876532
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhc
Q 022301 87 SSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 166 (299)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l 166 (299)
..++|+|+||.+..+.+||+..|++||+|+.++|.++ |+||.|+-.++|..|+..|
T Consensus 77 --------------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd----y~fvh~d~~eda~~air~l 132 (346)
T KOG0109|consen 77 --------------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----YAFVHFDRAEDAVEAIRGL 132 (346)
T ss_pred --------------------CccccccCCCCccccCHHHhhhhcccCCceeeeeecc----eeEEEEeeccchHHHHhcc
Confidence 3478999999999999999999999999999999998 9999999999999999999
Q ss_pred CCCeecCceeeEEEE
Q 022301 167 DDSEFRNAFSRAYVR 181 (299)
Q Consensus 167 ~g~~~~g~~~~~~~~ 181 (299)
++.++.|+...+.+.
T Consensus 133 ~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 133 DNTEFQGKRMHVQLS 147 (346)
T ss_pred cccccccceeeeeee
Confidence 999999996644443
No 16
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=3.4e-27 Score=175.24 Aligned_cols=165 Identities=22% Similarity=0.352 Sum_probs=141.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
+...||||+||+..++++.|++||-+.|+|++++|.. +...+|||||+|.++|+|+-|++.||...|.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 5678999999999999999999999999999999955 3567899999999999999999999999999999999887
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeE-EEEEeCCCC----CEEEEEecC
Q 022301 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDGSG----TTGIVDYTN 155 (299)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-~~~~~~~~~----~~~fv~f~~ 155 (299)
.... .....+.+|||+||.+.+++..|.+.|+.||.+.. .+++.++.+ +||||.|.+
T Consensus 87 s~~~------------------~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~s 148 (203)
T KOG0131|consen 87 SAHQ------------------KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYAS 148 (203)
T ss_pred cccc------------------ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechh
Confidence 5211 12223479999999999999999999999998876 466666553 499999999
Q ss_pred hhhHHHHHHhcCCCeecCceeeEEEEecccc
Q 022301 156 YDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (299)
Q Consensus 156 ~~~a~~a~~~l~g~~~~g~~~~~~~~~~~~~ 186 (299)
.+.+..|+..|+|..++.+.++..+...+..
T Consensus 149 feasd~ai~s~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 149 FEASDAAIGSMNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred HHHHHHHHHHhccchhcCCceEEEEEEecCC
Confidence 9999999999999999999776666554443
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=7.1e-27 Score=182.83 Aligned_cols=154 Identities=23% Similarity=0.411 Sum_probs=139.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEee---cCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~---~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
...+.|.|.-||.++|+|+|+.||..+|+|++|++. .+|++.||+||.|-++++|++|+..|||..+..+.|+|.|+
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 445779999999999999999999999999999994 46899999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecCh
Q 022301 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNY 156 (299)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~ 156 (299)
.+.. ....+.+|||.+||..+++.||+++|.+||.|+...|..|..+ |.+||.|...
T Consensus 119 RPSs-------------------~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr 179 (360)
T KOG0145|consen 119 RPSS-------------------DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKR 179 (360)
T ss_pred cCCh-------------------hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecch
Confidence 7533 2445679999999999999999999999999999888888655 4899999999
Q ss_pred hhHHHHHHhcCCCeecCcee
Q 022301 157 DDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 157 ~~a~~a~~~l~g~~~~g~~~ 176 (299)
.+|+.||..|||..--|...
T Consensus 180 ~EAe~AIk~lNG~~P~g~te 199 (360)
T KOG0145|consen 180 IEAEEAIKGLNGQKPSGCTE 199 (360)
T ss_pred hHHHHHHHhccCCCCCCCCC
Confidence 99999999999999888755
No 18
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=3.1e-26 Score=211.74 Aligned_cols=173 Identities=22% Similarity=0.354 Sum_probs=140.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCCCCC----CceEEEE
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD----GHRLRVE 78 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~----g~~i~v~ 78 (299)
..++|||+|||.++|+++|+++|..||+|..+.+.. ++..+|||||+|.+.++|..|+..|||..|. |..|.|.
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~ 256 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVG 256 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEee
Confidence 457899999999999999999999999999999954 3567899999999999999999999999999 9999998
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC---CCEEEEEecC
Q 022301 79 LAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTN 155 (299)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~---~~~~fv~f~~ 155 (299)
++........... .................+|||+||+..+++++|.++|..||.|..+.++.+.. .|||||+|.+
T Consensus 257 ~a~~k~er~~~~~-~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~ 335 (562)
T TIGR01628 257 RAQKRAEREAELR-RKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSN 335 (562)
T ss_pred cccChhhhHHHHH-hhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCC
Confidence 8754432110000 00000001112234567899999999999999999999999999999998853 3699999999
Q ss_pred hhhHHHHHHhcCCCeecCceeeE
Q 022301 156 YDDMKHAIKKLDDSEFRNAFSRA 178 (299)
Q Consensus 156 ~~~a~~a~~~l~g~~~~g~~~~~ 178 (299)
.++|.+|+..|||..++|+.+.+
T Consensus 336 ~~~A~~A~~~~~g~~~~gk~l~V 358 (562)
T TIGR01628 336 PEEANRAVTEMHGRMLGGKPLYV 358 (562)
T ss_pred HHHHHHHHHHhcCCeeCCceeEE
Confidence 99999999999999999995533
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.94 E-value=3.7e-25 Score=200.13 Aligned_cols=176 Identities=21% Similarity=0.341 Sum_probs=137.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
+++|||+|||.++|+++|+++|+.||.|..|.|..+ +.++|||||+|.+.++|..|+..|||..|.|+.|.|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 589999999999999999999999999999999643 46789999999999999999999999999999999999653
Q ss_pred CCCCCCCC-------------------------------C------CCCCCC-------------------------C--
Q 022301 83 GRGRSSSD-------------------------------R------HSSHSS-------------------------G-- 98 (299)
Q Consensus 83 ~~~~~~~~-------------------------------~------~~~~~~-------------------------~-- 98 (299)
........ . ...... .
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 21100000 0 000000 0
Q ss_pred ----CCCCC---CCCCccEEEEeCCCCCCC----------HHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHH
Q 022301 99 ----RGRGV---SRRSEYRVLVTGLPSSAS----------WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKH 161 (299)
Q Consensus 99 ----~~~~~---~~~~~~~l~v~nl~~~~~----------~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~ 161 (299)
....+ ......+|+|.||....+ .++|.+.|.+||.|+.+.+......|++||+|.+.++|..
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~ 425 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALA 425 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHH
Confidence 00000 123556888899855443 3789999999999999999877777899999999999999
Q ss_pred HHHhcCCCeecCceeeEEEE
Q 022301 162 AIKKLDDSEFRNAFSRAYVR 181 (299)
Q Consensus 162 a~~~l~g~~~~g~~~~~~~~ 181 (299)
|++.|||..++|+.+.+...
T Consensus 426 A~~~lnGr~f~gr~i~~~~~ 445 (457)
T TIGR01622 426 AFQALNGRYFGGKMITAAFV 445 (457)
T ss_pred HHHHhcCcccCCeEEEEEEE
Confidence 99999999999997655443
No 20
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=2.6e-26 Score=191.41 Aligned_cols=162 Identities=23% Similarity=0.440 Sum_probs=136.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCC-CCC--ceEEEE
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYD-FDG--HRLRVE 78 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~-~~g--~~i~v~ 78 (299)
..-+|||+.||..++|.||+++|++||.|.+|.|.. ++.++|||||.|.+.++|.+|+..||+.. |.| .+|.|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 456899999999999999999999999999999955 57889999999999999999999999854 444 578888
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC---CEEEEEecC
Q 022301 79 LAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTN 155 (299)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~---~~~fv~f~~ 155 (299)
++..... ....+.+|||+-|+..+++.+|+++|.+||.|++|.|+.+..+ |||||.|.+
T Consensus 113 ~Ad~E~e------------------r~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fst 174 (510)
T KOG0144|consen 113 YADGERE------------------RIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFST 174 (510)
T ss_pred ccchhhh------------------ccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEeh
Confidence 8764432 1133578999999999999999999999999999999998754 799999999
Q ss_pred hhhHHHHHHhcCCCe-ecCceeeEEEEecc
Q 022301 156 YDDMKHAIKKLDDSE-FRNAFSRAYVRVRE 184 (299)
Q Consensus 156 ~~~a~~a~~~l~g~~-~~g~~~~~~~~~~~ 184 (299)
.+.|..||+.|||.. +.|+..-..+++.+
T Consensus 175 ke~A~~Aika~ng~~tmeGcs~PLVVkFAD 204 (510)
T KOG0144|consen 175 KEMAVAAIKALNGTQTMEGCSQPLVVKFAD 204 (510)
T ss_pred HHHHHHHHHhhccceeeccCCCceEEEecc
Confidence 999999999999985 56665433444433
No 21
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=3.1e-25 Score=173.64 Aligned_cols=174 Identities=24% Similarity=0.364 Sum_probs=140.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEe---ecCCCCCceEEEEecChHHHHHHHHhcCCCCCCC--ceEEEEEc
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVELA 80 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~---~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g--~~i~v~~~ 80 (299)
...|||.+||..+|..+|.++|++||.|..-.| ..++.++|.+||.|...++|+.||..|||..-.| .+|.|+|+
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 457999999999999999999999999988877 3468899999999999999999999999987665 58999998
Q ss_pred cCCCCCCCCC-------------------CCC---------------CCCCC----------CCCCCCCCCccEEEEeCC
Q 022301 81 HGGRGRSSSD-------------------RHS---------------SHSSG----------RGRGVSRRSEYRVLVTGL 116 (299)
Q Consensus 81 ~~~~~~~~~~-------------------~~~---------------~~~~~----------~~~~~~~~~~~~l~v~nl 116 (299)
.......... ... .+.+. ...+.....+|+|||.||
T Consensus 207 nnPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNL 286 (360)
T KOG0145|consen 207 NNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNL 286 (360)
T ss_pred CCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEec
Confidence 7553221100 000 00000 011223346899999999
Q ss_pred CCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCceeeEE
Q 022301 117 PSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (299)
Q Consensus 117 ~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (299)
.+++++..|+++|.+||.|..|+++.|.. .|||||.+.+.++|..||..|||+.++++.+.+.
T Consensus 287 spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVs 353 (360)
T KOG0145|consen 287 SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 353 (360)
T ss_pred CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEE
Confidence 99999999999999999999999999865 4699999999999999999999999999965433
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.6e-24 Score=185.63 Aligned_cols=172 Identities=20% Similarity=0.335 Sum_probs=142.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
...||||++||+.++.++|.++|+.+|+|..+.+..+ +..+|||||.|.-.|+++.|+..+++..|.|+.|.|.++.
T Consensus 4 ~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 4 SGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAK 83 (678)
T ss_pred CCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccc
Confidence 4489999999999999999999999999999999543 3568999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCC--CCCCCC---C--CCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC---CEEEE
Q 022301 82 GGRGRSSSDRHSS--HSSGRG---R--GVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIV 151 (299)
Q Consensus 82 ~~~~~~~~~~~~~--~~~~~~---~--~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~---~~~fv 151 (299)
............. ...... . .....+.+.|+|.|||..+...+|+.+|+.||.|..|.|+....+ |||||
T Consensus 84 ~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV 163 (678)
T KOG0127|consen 84 KRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFV 163 (678)
T ss_pred ccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEE
Confidence 6554331111100 000000 0 111234799999999999999999999999999999999977665 59999
Q ss_pred EecChhhHHHHHHhcCCCeecCcee
Q 022301 152 DYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 152 ~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
+|....+|..|++.|||.+|+|+.+
T Consensus 164 ~fk~~~dA~~Al~~~N~~~i~gR~V 188 (678)
T KOG0127|consen 164 QFKEKKDAEKALEFFNGNKIDGRPV 188 (678)
T ss_pred EEeeHHHHHHHHHhccCceecCcee
Confidence 9999999999999999999999944
No 23
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.2e-23 Score=180.37 Aligned_cols=177 Identities=21% Similarity=0.360 Sum_probs=139.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEee--cCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK--IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~--~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 83 (299)
.-.|+|.|||+.|.+.+|+.+|+.||.|.+|.|+ .++...|||||+|.+..+|..|+..||+..|.|++|-|.|+-..
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 4579999999999999999999999999999994 45677799999999999999999999999999999999998643
Q ss_pred CCCCCCC-----------------------C------------CCCC--CC---------C---------CCC-------
Q 022301 84 RGRSSSD-----------------------R------------HSSH--SS---------G---------RGR------- 101 (299)
Q Consensus 84 ~~~~~~~-----------------------~------------~~~~--~~---------~---------~~~------- 101 (299)
....... . .... .. . ...
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 3211100 0 0000 00 0 000
Q ss_pred ---------CCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhc--
Q 022301 102 ---------GVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKL-- 166 (299)
Q Consensus 102 ---------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l-- 166 (299)
.....-+.+|||.|||+++++++|.++|.+||.|.++.+..++.+ |.|||.|.+..+|+.||...
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Asp 356 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASP 356 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCc
Confidence 001112368999999999999999999999999999999988766 59999999999999999876
Q ss_pred ---CC-CeecCceeeEEEEe
Q 022301 167 ---DD-SEFRNAFSRAYVRV 182 (299)
Q Consensus 167 ---~g-~~~~g~~~~~~~~~ 182 (299)
.| ..|+|+.+.+...|
T Consensus 357 a~e~g~~ll~GR~Lkv~~Av 376 (678)
T KOG0127|consen 357 ASEDGSVLLDGRLLKVTLAV 376 (678)
T ss_pred cCCCceEEEeccEEeeeecc
Confidence 33 67788876555544
No 24
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.92 E-value=4.5e-26 Score=187.68 Aligned_cols=167 Identities=16% Similarity=0.168 Sum_probs=122.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC------CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEE
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP------PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~------~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v 77 (299)
.....|.|.||.+++|.++|+.||+.+|+|.++.|..+ +.....|||.|.+...+..|++ |.+++|-++.|.|
T Consensus 5 ~~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv 83 (479)
T KOG4676|consen 5 SSLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIV 83 (479)
T ss_pred CCCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEE
Confidence 44558999999999999999999999999999999653 2334689999999999999999 7777777777777
Q ss_pred EEccCCCCCCC---------CCCC------CCCCCCCC------------CCCCCC----------CccEEEEeCCCCCC
Q 022301 78 ELAHGGRGRSS---------SDRH------SSHSSGRG------------RGVSRR----------SEYRVLVTGLPSSA 120 (299)
Q Consensus 78 ~~~~~~~~~~~---------~~~~------~~~~~~~~------------~~~~~~----------~~~~l~v~nl~~~~ 120 (299)
.+......+.. ...+ ...++... ..|+.+ ...+++|++|+..+
T Consensus 84 ~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~ 163 (479)
T KOG4676|consen 84 RPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAA 163 (479)
T ss_pred EecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhh
Confidence 66543322100 0000 00000000 000000 12458899999999
Q ss_pred CHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeec
Q 022301 121 SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (299)
Q Consensus 121 ~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~ 172 (299)
...++.+.|..+|.|.+..+.......+|.|.|........|+. ++|.++.
T Consensus 164 ~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 164 ILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred cchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 99999999999999999999888777799999999888888887 6666655
No 25
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=1.9e-23 Score=163.30 Aligned_cols=163 Identities=38% Similarity=0.658 Sum_probs=134.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCCCCC
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~ 86 (299)
..|||++||+.+.+.+|..||..||.|.++.|+ .||+||+|.+..+|..|+..||+..|.|..+.|+|+......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~ 76 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRG 76 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeecccccccc
Confidence 468999999999999999999999999999997 689999999999999999999999999999999988754332
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHh
Q 022301 87 SSSDRHSSHSS-GRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKK 165 (299)
Q Consensus 87 ~~~~~~~~~~~-~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~ 165 (299)
......+.... .....++....+.++|.+++..+.+++|.++|.++|.+....+ ..+++||+|.+.++|..|+..
T Consensus 77 ~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~ 152 (216)
T KOG0106|consen 77 RGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEK 152 (216)
T ss_pred cCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchh
Confidence 21111111111 2233455678889999999999999999999999999955444 223899999999999999999
Q ss_pred cCCCeecCceeeE
Q 022301 166 LDDSEFRNAFSRA 178 (299)
Q Consensus 166 l~g~~~~g~~~~~ 178 (299)
|+|..+.++.++.
T Consensus 153 l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 153 LDGKKLNGRRISV 165 (216)
T ss_pred ccchhhcCceeee
Confidence 9999999995543
No 26
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.90 E-value=3.8e-22 Score=151.28 Aligned_cols=75 Identities=17% Similarity=0.144 Sum_probs=68.9
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 102 GVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 102 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
++.....+.|.|.||.+.++.++|..+|++||.|.+|.|..+..+ |||||.|....+|++|++.|+|..|+|+.+
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRel 85 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGREL 85 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecccee
Confidence 355567789999999999999999999999999999999999755 599999999999999999999999999944
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=2.3e-22 Score=173.33 Aligned_cols=142 Identities=26% Similarity=0.380 Sum_probs=129.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCCCCC
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~ 86 (299)
..|||| +++|+..|.++|+.+|+|..+.+..+-.+.|||||.|.++++|..||..||...+.|++|.+.|+....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~-- 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP-- 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC--
Confidence 479998 999999999999999999999994332389999999999999999999999999999999999986433
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC--CEEEEEecChhhHHHHHH
Q 022301 87 SSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG--TTGIVDYTNYDDMKHAIK 164 (299)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~--~~~fv~f~~~~~a~~a~~ 164 (299)
..|||.||++.++..+|.++|+.||.|+.|++..+..+ || ||+|++.++|.+|++
T Consensus 77 ----------------------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~ 133 (369)
T KOG0123|consen 77 ----------------------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIE 133 (369)
T ss_pred ----------------------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHH
Confidence 22999999999999999999999999999999999766 58 999999999999999
Q ss_pred hcCCCeecCcee
Q 022301 165 KLDDSEFRNAFS 176 (299)
Q Consensus 165 ~l~g~~~~g~~~ 176 (299)
.+||..+.|+.+
T Consensus 134 ~~ng~ll~~kki 145 (369)
T KOG0123|consen 134 KLNGMLLNGKKI 145 (369)
T ss_pred HhcCcccCCCee
Confidence 999999999843
No 28
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=3.2e-23 Score=169.74 Aligned_cols=162 Identities=22% Similarity=0.362 Sum_probs=136.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 83 (299)
|.||||.|.+.+.|+.|...|..||+|++|.|.+ +++.+|||||+|+-+|.|+.|++.|||..+.|+.|+|....+-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 7899999999999999999999999999999955 5789999999999999999999999999999999999743211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhH
Q 022301 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDM 159 (299)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a 159 (299)
.... +-..........-+.|||..+.++++++||+.+|+-||+|+.|.+..++.+ ||+||+|.+....
T Consensus 194 pQAQ--------piID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~ 265 (544)
T KOG0124|consen 194 PQAQ--------PIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 265 (544)
T ss_pred cccc--------hHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccch
Confidence 1000 000000112224578999999999999999999999999999999998754 5999999999999
Q ss_pred HHHHHhcCCCeecCcee
Q 022301 160 KHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 160 ~~a~~~l~g~~~~g~~~ 176 (299)
..|+..||=..++|.++
T Consensus 266 ~eAiasMNlFDLGGQyL 282 (544)
T KOG0124|consen 266 SEAIASMNLFDLGGQYL 282 (544)
T ss_pred HHHhhhcchhhcccceE
Confidence 99999999999999954
No 29
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.88 E-value=3.5e-21 Score=149.05 Aligned_cols=170 Identities=22% Similarity=0.321 Sum_probs=138.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHH----HhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEE
Q 022301 2 SSRASRTLYVGNLPGDIREREVED----LFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (299)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~----~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v 77 (299)
+-+++.||||.||+..+..++|+. ||++||.|.+|....+.+.+|.|||.|.+.+.|..|+..|+|..|.|+++.|
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 346667999999999999999887 9999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCC------------------------CCCC---CCCC---CC-CCCCCCccEEEEeCCCCCCCHHHHH
Q 022301 78 ELAHGGRGRSSSDR------------------------HSSH---SSGR---GR-GVSRRSEYRVLVTGLPSSASWQDLK 126 (299)
Q Consensus 78 ~~~~~~~~~~~~~~------------------------~~~~---~~~~---~~-~~~~~~~~~l~v~nl~~~~~~~~l~ 126 (299)
.||+.....-.... .... .... .. .....+...+++.|||..++.+.|.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 99975542111100 0000 0000 00 1235677899999999999999999
Q ss_pred HHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeec
Q 022301 127 DHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (299)
Q Consensus 127 ~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~ 172 (299)
.+|.+|.....+.++.... +.|||+|.+...|..|...++|..|-
T Consensus 165 ~lf~qf~g~keir~i~~~~-~iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPPRS-GIAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred HHHhhCcccceeEeccCCC-ceeEEecchhhhhHHHhhhhccceec
Confidence 9999999888888776543 48999999999999999999998886
No 30
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.88 E-value=5.7e-22 Score=175.23 Aligned_cols=160 Identities=23% Similarity=0.401 Sum_probs=135.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec--CC----CCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PP----RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~--~~----~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
++|||.||++.+|.++|..+|..+|.|..+.|.. ++ .+.|||||+|.++++|+.|++.|+|+.|.|..|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 3499999999999999999999999999998833 22 24599999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCC----CCCEEEEEecCh
Q 022301 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNY 156 (299)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~----~~~~~fv~f~~~ 156 (299)
......... ..-.....++.|+|.|||..++..+++++|..||.|..|.++... ..|||||+|.++
T Consensus 596 ~~k~~~~~g----------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~ 665 (725)
T KOG0110|consen 596 ENKPASTVG----------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTP 665 (725)
T ss_pred cCccccccc----------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCc
Confidence 722211111 111223347899999999999999999999999999999998772 236999999999
Q ss_pred hhHHHHHHhcCCCeecCcee
Q 022301 157 DDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 157 ~~a~~a~~~l~g~~~~g~~~ 176 (299)
.+|..|+++|.+..|.|+.+
T Consensus 666 ~ea~nA~~al~STHlyGRrL 685 (725)
T KOG0110|consen 666 REAKNAFDALGSTHLYGRRL 685 (725)
T ss_pred HHHHHHHHhhcccceechhh
Confidence 99999999999999999865
No 31
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.88 E-value=4.4e-21 Score=145.53 Aligned_cols=80 Identities=35% Similarity=0.588 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
+...+|.|-||.+.++.++|..+|++||.|.+|.|.. +.+++|||||.|....+|+.|+..|+|.+|+|+.|.|++|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 3467899999999999999999999999999999954 5788999999999999999999999999999999999988
Q ss_pred cCC
Q 022301 81 HGG 83 (299)
Q Consensus 81 ~~~ 83 (299)
...
T Consensus 91 ryg 93 (256)
T KOG4207|consen 91 RYG 93 (256)
T ss_pred hcC
Confidence 643
No 32
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=3.5e-21 Score=142.43 Aligned_cols=73 Identities=21% Similarity=0.274 Sum_probs=65.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCceeeEEE
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~ 180 (299)
..+.|||+||+..+++.||+.+|..||.|..|+|..+ +.|||||+|++..+|++|+..|+|..|+|..+.+++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-CCCceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence 3689999999999999999999999999999999995 557999999999999999999999999998443333
No 33
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=3.4e-20 Score=137.29 Aligned_cols=79 Identities=49% Similarity=0.832 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 83 (299)
+-.+.|||+||+.++++.||..+|..||+|..|+|.. .+.|||||+|+++.+|..|+..|+|..|.|..|.|+++...
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 4578999999999999999999999999999999965 44799999999999999999999999999999999998754
Q ss_pred C
Q 022301 84 R 84 (299)
Q Consensus 84 ~ 84 (299)
.
T Consensus 86 ~ 86 (195)
T KOG0107|consen 86 P 86 (195)
T ss_pred c
Confidence 4
No 34
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=6.9e-21 Score=159.27 Aligned_cols=181 Identities=23% Similarity=0.334 Sum_probs=142.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCCC-CC--CceEEEEE
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYD-FD--GHRLRVEL 79 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~-~~--g~~i~v~~ 79 (299)
..++|||+.|+..+||++|.++|.+||.|++|.|.. ++.++|||||+|.+.|.|..||+.|||.. +. ..+|.|.|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 367899999999999999999999999999999965 46889999999999999999999999954 44 45899999
Q ss_pred ccCCCCCCC-----------------------------------------------------------------------
Q 022301 80 AHGGRGRSS----------------------------------------------------------------------- 88 (299)
Q Consensus 80 ~~~~~~~~~----------------------------------------------------------------------- 88 (299)
+........
T Consensus 203 ADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~ 282 (510)
T KOG0144|consen 203 ADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAA 282 (510)
T ss_pred cccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhh
Confidence 863322100
Q ss_pred --------CCCCCC--------CC----C---------C-----------------------------------------
Q 022301 89 --------SDRHSS--------HS----S---------G----------------------------------------- 98 (299)
Q Consensus 89 --------~~~~~~--------~~----~---------~----------------------------------------- 98 (299)
...... .. . .
T Consensus 283 ~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa 362 (510)
T KOG0144|consen 283 AATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAA 362 (510)
T ss_pred hcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcccc
Confidence 000000 00 0 0
Q ss_pred ----------------------------------------------------CCCCCCCCCccEEEEeCCCCCCCHHHHH
Q 022301 99 ----------------------------------------------------RGRGVSRRSEYRVLVTGLPSSASWQDLK 126 (299)
Q Consensus 99 ----------------------------------------------------~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 126 (299)
.......+.+.+|||.+||.+.-+.+|-
T Consensus 363 ~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~ 442 (510)
T KOG0144|consen 363 SLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLI 442 (510)
T ss_pred cccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHHH
Confidence 0000001156789999999999999999
Q ss_pred HHHHhcCCeeEEEEEeCCCCC----EEEEEecChhhHHHHHHhcCCCeecCceeeEEEEeccc
Q 022301 127 DHMRRAGDVCFSQVFRDGSGT----TGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (299)
Q Consensus 127 ~~f~~~G~v~~~~~~~~~~~~----~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~~~~ 185 (299)
..|..||.|+..++..|+.++ |+||.|++..+|..||..|||..|+.+..++-.+++..
T Consensus 443 ~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 443 ATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRN 505 (510)
T ss_pred HHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccC
Confidence 999999999999999999887 89999999999999999999999999976655554443
No 35
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.7e-20 Score=161.78 Aligned_cols=160 Identities=26% Similarity=0.424 Sum_probs=136.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC-CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~-~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
+++...|||.||++.++..+|.++|+.||+|.+|++..+ ..++|| ||+|.++++|.+|+..|||..+.|++|.|....
T Consensus 73 ~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 73 QRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred ccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 456666999999999999999999999999999999554 348899 999999999999999999999999999998775
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC---CEEEEEecChhh
Q 022301 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDD 158 (299)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~---~~~fv~f~~~~~ 158 (299)
.......... .....-+.++|.|++.+++++.|.++|..+|.|..+.++.+..+ +|+||+|++.++
T Consensus 152 ~~~er~~~~~-----------~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~ 220 (369)
T KOG0123|consen 152 RKEEREAPLG-----------EYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPED 220 (369)
T ss_pred chhhhccccc-----------chhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhH
Confidence 4432111110 12234578999999999999999999999999999999987544 699999999999
Q ss_pred HHHHHHhcCCCeecCc
Q 022301 159 MKHAIKKLDDSEFRNA 174 (299)
Q Consensus 159 a~~a~~~l~g~~~~g~ 174 (299)
|..|++.|+|..+.+.
T Consensus 221 a~~av~~l~~~~~~~~ 236 (369)
T KOG0123|consen 221 AKKAVETLNGKIFGDK 236 (369)
T ss_pred HHHHHHhccCCcCCcc
Confidence 9999999999999976
No 36
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=2.4e-20 Score=146.91 Aligned_cols=172 Identities=22% Similarity=0.336 Sum_probs=135.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCCC-CCC--ceEEEEE
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYD-FDG--HRLRVEL 79 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~-~~g--~~i~v~~ 79 (299)
..++|||+-|...-.|||+..+|..||+|.+|.+.. ++.++|+|||+|.+..+|..||..|||.. +.| -.|.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 467899999999999999999999999999999954 67889999999999999999999999954 333 4688888
Q ss_pred ccCCCCC-------------------------------------------------------------------------
Q 022301 80 AHGGRGR------------------------------------------------------------------------- 86 (299)
Q Consensus 80 ~~~~~~~------------------------------------------------------------------------- 86 (299)
+......
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 6511100
Q ss_pred CCC-----CCC-----------------C------CCCCC----------------------------------------
Q 022301 87 SSS-----DRH-----------------S------SHSSG---------------------------------------- 98 (299)
Q Consensus 87 ~~~-----~~~-----------------~------~~~~~---------------------------------------- 98 (299)
+.. ..+ . ..+.+
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 000 000 0 00000
Q ss_pred ------------------CCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCC----EEEEEecCh
Q 022301 99 ------------------RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGT----TGIVDYTNY 156 (299)
Q Consensus 99 ------------------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~----~~fv~f~~~ 156 (299)
.......+.+++|||..||.+..+.||.++|-.||.|+..+++.|.-+. |+||.|.++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 0000112268999999999999999999999999999999999887554 999999999
Q ss_pred hhHHHHHHhcCCCeecCcee
Q 022301 157 DDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 157 ~~a~~a~~~l~g~~~~g~~~ 176 (299)
..|+.||..|||.+|+-+.+
T Consensus 338 ~SaQaAIqAMNGFQIGMKRL 357 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRL 357 (371)
T ss_pred hhHHHHHHHhcchhhhhhhh
Confidence 99999999999999998844
No 37
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.84 E-value=8.2e-20 Score=140.28 Aligned_cols=169 Identities=23% Similarity=0.379 Sum_probs=130.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCC----CceEEEEecChHHHHHHHHhcCCCCCC---CceEEE
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRP----PGYAFVEFEEARDAEDAIRGRDGYDFD---GHRLRV 77 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~----~g~afV~F~~~e~A~~A~~~l~~~~~~---g~~i~v 77 (299)
.-+||||.+||.++...+|..||..|--.+.+.++.+.+. +.+|||.|.+.++|..|++.|||+.|+ +..|.+
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3589999999999999999999999988888888776544 379999999999999999999999997 778999
Q ss_pred EEccCCCCCCCCCCCCCC----------------------------------CCC-------------------------
Q 022301 78 ELAHGGRGRSSSDRHSSH----------------------------------SSG------------------------- 98 (299)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~----------------------------------~~~------------------------- 98 (299)
++++.............. ...
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 998754321110000000 000
Q ss_pred --------CCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCe
Q 022301 99 --------RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE 170 (299)
Q Consensus 99 --------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~ 170 (299)
.........+.+|||.||..++++++|+++|+.|-....++|........||++|++.+.|.+||..|+|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 000011114568999999999999999999999988877777655544589999999999999999999988
Q ss_pred ecC
Q 022301 171 FRN 173 (299)
Q Consensus 171 ~~g 173 (299)
|-.
T Consensus 273 ~s~ 275 (284)
T KOG1457|consen 273 LSS 275 (284)
T ss_pred ecc
Confidence 753
No 38
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.83 E-value=7.4e-19 Score=158.81 Aligned_cols=78 Identities=24% Similarity=0.483 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
..++|||+|||+++++++|+++|+.||+|..+.|.. ++..+|||||+|.+.++|..|+..||+..|.|+.|.|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 457999999999999999999999999999999965 35689999999999999999999999999999999998865
Q ss_pred C
Q 022301 82 G 82 (299)
Q Consensus 82 ~ 82 (299)
.
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 3
No 39
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=3.5e-20 Score=146.29 Aligned_cols=128 Identities=25% Similarity=0.415 Sum_probs=109.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 1 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 1 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
|.+...+||||+||...+||+-|..||.++|.|..++|+.+ .|+|.|+
T Consensus 1 ~~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~--------------------------------e~~v~wa 48 (321)
T KOG0148|consen 1 NGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------------------------------ELKVNWA 48 (321)
T ss_pred CCCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh--------------------------------hhccccc
Confidence 45788999999999999999999999999999999999854 4666666
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecCh
Q 022301 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNY 156 (299)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~ 156 (299)
.....+.. +.......+||+.|...++-++|++.|.+||+|..++|++|..+ ||+||.|.+.
T Consensus 49 ~~p~nQsk--------------~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k 114 (321)
T KOG0148|consen 49 TAPGNQSK--------------PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNK 114 (321)
T ss_pred cCcccCCC--------------CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccch
Confidence 54322111 22233578999999999999999999999999999999999765 5999999999
Q ss_pred hhHHHHHHhcCCCeecCc
Q 022301 157 DDMKHAIKKLDDSEFRNA 174 (299)
Q Consensus 157 ~~a~~a~~~l~g~~~~g~ 174 (299)
++|+.||..|||..|+++
T Consensus 115 ~dAEnAI~~MnGqWlG~R 132 (321)
T KOG0148|consen 115 EDAENAIQQMNGQWLGRR 132 (321)
T ss_pred HHHHHHHHHhCCeeeccc
Confidence 999999999999999998
No 40
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.83 E-value=5.1e-20 Score=158.78 Aligned_cols=171 Identities=22% Similarity=0.348 Sum_probs=128.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCCCC
Q 022301 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRG 85 (299)
Q Consensus 9 l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 85 (299)
|||+||..++|+++|..+|+.||.|..|.+.. +|..+|||||+|.+.++|.+|+..|||..|.|+.|+|........
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecc
Confidence 89999999999999999999999999999944 588999999999999999999999999999999999977553332
Q ss_pred CCCCCC---C------CCCC--CC------------------------------------------CCCCCCC-------
Q 022301 86 RSSSDR---H------SSHS--SG------------------------------------------RGRGVSR------- 105 (299)
Q Consensus 86 ~~~~~~---~------~~~~--~~------------------------------------------~~~~~~~------- 105 (299)
...... . .... .. .....+.
T Consensus 361 ~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~ 440 (549)
T KOG0147|consen 361 TKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFD 440 (549)
T ss_pred cccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccC
Confidence 221100 0 0000 00 0011111
Q ss_pred CCccEEEEeCCCCC--CC--------HHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCce
Q 022301 106 RSEYRVLVTGLPSS--AS--------WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (299)
Q Consensus 106 ~~~~~l~v~nl~~~--~~--------~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (299)
.+.-++.+.|+-.. .| .+++.+.+.+||+|+.|.+..+.. |+.||.|.+.+.|..|+..|||.++.|+.
T Consensus 441 i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~-g~VYvrc~s~~~A~~a~~alhgrWF~gr~ 519 (549)
T KOG0147|consen 441 IPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSA-GCVYVRCPSAEAAGTAVKALHGRWFAGRM 519 (549)
T ss_pred CccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCC-ceEEEecCcHHHHHHHHHHHhhhhhccce
Confidence 23334445553221 11 477888889999999888877765 89999999999999999999999999998
Q ss_pred eeEEE
Q 022301 176 SRAYV 180 (299)
Q Consensus 176 ~~~~~ 180 (299)
+++.+
T Consensus 520 Ita~~ 524 (549)
T KOG0147|consen 520 ITAKY 524 (549)
T ss_pred eEEEE
Confidence 76554
No 41
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.83 E-value=5.2e-21 Score=164.83 Aligned_cols=168 Identities=20% Similarity=0.297 Sum_probs=138.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
+..+|||+-.|+..+++.+|.+||+.+|+|.+|.|+.+ +.++|.|||+|.+.+.+..||. |.|..+.|.+|.|...
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEeccc
Confidence 56788999999999999999999999999999999554 5688999999999999999997 9999999999999887
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecCh
Q 022301 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNY 156 (299)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~ 156 (299)
............. .. ...-..+...|||+||..++++++|..+|+.||.|..|++..+..+ |||||+|.+.
T Consensus 256 Eaeknr~a~~s~a-~~----~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~ 330 (549)
T KOG0147|consen 256 EAEKNRAANASPA-LQ----GKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNK 330 (549)
T ss_pred HHHHHHHHhcccc-cc----ccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecH
Confidence 5444321111110 00 0011112223999999999999999999999999999999988633 5999999999
Q ss_pred hhHHHHHHhcCCCeecCceee
Q 022301 157 DDMKHAIKKLDDSEFRNAFSR 177 (299)
Q Consensus 157 ~~a~~a~~~l~g~~~~g~~~~ 177 (299)
++|..|+.+|||.+|.|..+.
T Consensus 331 ~~ar~a~e~lngfelAGr~ik 351 (549)
T KOG0147|consen 331 EDARKALEQLNGFELAGRLIK 351 (549)
T ss_pred HHHHHHHHHhccceecCceEE
Confidence 999999999999999999765
No 42
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.81 E-value=1.6e-19 Score=150.43 Aligned_cols=162 Identities=20% Similarity=0.360 Sum_probs=135.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEE
Q 022301 1 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (299)
Q Consensus 1 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v 77 (299)
|+....++|||++|++++++|.|.+.|.+||+|.+|.++. ++..+||+||+|++++.+..+|. .....|.|+.|.+
T Consensus 1 ~~~~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 1 SESGESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEP 79 (311)
T ss_pred CCccCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccc
Confidence 3455789999999999999999999999999999999955 46788999999999999999988 6677899999988
Q ss_pred EEccCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEe
Q 022301 78 ELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDY 153 (299)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f 153 (299)
+.+.+...+...... .....|||++||.++++++|++.|.+||.|..+.++.+... +|+||.|
T Consensus 80 k~av~r~~~~~~~~~-------------~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~ 146 (311)
T KOG4205|consen 80 KRAVSREDQTKVGRH-------------LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTF 146 (311)
T ss_pred eeccCcccccccccc-------------cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEe
Confidence 877655433222111 14569999999999999999999999999999988888654 5999999
Q ss_pred cChhhHHHHHHhcCCCeecCceee
Q 022301 154 TNYDDMKHAIKKLDDSEFRNAFSR 177 (299)
Q Consensus 154 ~~~~~a~~a~~~l~g~~~~g~~~~ 177 (299)
...+.+.+++. ..-..|+|+.++
T Consensus 147 ~~e~sVdkv~~-~~f~~~~gk~ve 169 (311)
T KOG4205|consen 147 DSEDSVDKVTL-QKFHDFNGKKVE 169 (311)
T ss_pred ccccccceecc-cceeeecCceee
Confidence 99999998887 777788888443
No 43
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.79 E-value=7.7e-19 Score=132.34 Aligned_cols=82 Identities=26% Similarity=0.510 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
..+++|||+|||+++|+++|+++|.+||+|..|.|.. ++.++|||||+|.+.++|+.|+..||+..|.|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4578999999999999999999999999999999954 4678999999999999999999999999999999999998
Q ss_pred cCCCC
Q 022301 81 HGGRG 85 (299)
Q Consensus 81 ~~~~~ 85 (299)
.....
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 75543
No 44
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.79 E-value=9.7e-18 Score=136.92 Aligned_cols=180 Identities=21% Similarity=0.270 Sum_probs=140.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCee--------EEEe--ecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIA--------HIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--------~i~~--~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~ 73 (299)
.-++.|||.|||.++|.+++.++|++||.|. .|+| ...|+.+|-|+|.|...|++..|+..|++..|.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3466799999999999999999999999773 2444 33578899999999999999999999999999999
Q ss_pred eEEEEEccCCCCCCCCCCCCC-------------------CCCCCCCCCCCCCccEEEEeCCCCC----CC-------HH
Q 022301 74 RLRVELAHGGRGRSSSDRHSS-------------------HSSGRGRGVSRRSEYRVLVTGLPSS----AS-------WQ 123 (299)
Q Consensus 74 ~i~v~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~l~v~nl~~~----~~-------~~ 123 (299)
.|.|+.|+............. +......+.-.....+|+|.|+-.. .+ ++
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 999998875443222211110 0111111122235578888886331 12 57
Q ss_pred HHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCceeeEEEEec
Q 022301 124 DLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (299)
Q Consensus 124 ~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~~ 183 (299)
+|.+.+.+||.|..|.|....+.|.+.|.|.+.++|..||+.|+|..++|+.+++.+--.
T Consensus 292 dl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 788889999999999999999999999999999999999999999999999888777533
No 45
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=4.4e-17 Score=130.63 Aligned_cols=80 Identities=39% Similarity=0.708 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEe---ecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~---~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
..|=+||||+-|+++++|..|+..|..||+|+.|.| +.+++++|||||+|.++.+...|.+..+|..|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 467899999999999999999999999999999999 45789999999999999999999999999999999999988
Q ss_pred ccC
Q 022301 80 AHG 82 (299)
Q Consensus 80 ~~~ 82 (299)
-..
T Consensus 178 ERg 180 (335)
T KOG0113|consen 178 ERG 180 (335)
T ss_pred ccc
Confidence 653
No 46
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.77 E-value=7.4e-18 Score=149.43 Aligned_cols=175 Identities=20% Similarity=0.277 Sum_probs=136.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 83 (299)
...+.|+|+|||..+..++|..+|..||+|..|.|+..| ..|+|+|.++.+|..|+..|....+...++.+.|+...
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~d 459 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGG---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPED 459 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCccc---ceeeeeecCccchHHHHHHhchhhhccCccccccChhh
Confidence 346889999999999999999999999999999665222 25899999999999999999999999999999887644
Q ss_pred CCC--CCCCC------CC----------CCCCCCCCC-------------CCCCCccEEEEeCCCCCCCHHHHHHHHHhc
Q 022301 84 RGR--SSSDR------HS----------SHSSGRGRG-------------VSRRSEYRVLVTGLPSSASWQDLKDHMRRA 132 (299)
Q Consensus 84 ~~~--~~~~~------~~----------~~~~~~~~~-------------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~ 132 (299)
... +.... .. ......... ......+.|||.||+..++.++|..+|..+
T Consensus 460 vf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~ 539 (725)
T KOG0110|consen 460 VFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQ 539 (725)
T ss_pred hccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhc
Confidence 433 11000 00 000000000 011123349999999999999999999999
Q ss_pred CCeeEEEEEeCCCC-------CEEEEEecChhhHHHHHHhcCCCeecCceeeEEEE
Q 022301 133 GDVCFSQVFRDGSG-------TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (299)
Q Consensus 133 G~v~~~~~~~~~~~-------~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~ 181 (299)
|.|..+.|...+.. |||||+|.+.++|+.|+..|+|..|+|+.+...+.
T Consensus 540 G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 540 GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 99999988777654 79999999999999999999999999996644443
No 47
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.76 E-value=2.4e-17 Score=137.34 Aligned_cols=167 Identities=16% Similarity=0.265 Sum_probs=136.6
Q ss_pred CCeEEEcCCCCC-CCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCCC
Q 022301 6 SRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (299)
Q Consensus 6 ~~~l~V~nLp~~-~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 84 (299)
+++|.|.||.+. +|.+.|..+|+-||+|..|+|...++ ..|+|+|.+...|+.|++.|+|..+.|++|.|.+++...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk--d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK--DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC--cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 789999999665 99999999999999999999976653 689999999999999999999999999999999998766
Q ss_pred CCCCCCCCCCC--CCC--------------CCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCE
Q 022301 85 GRSSSDRHSSH--SSG--------------RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTT 148 (299)
Q Consensus 85 ~~~~~~~~~~~--~~~--------------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~ 148 (299)
.+...+..... ..+ .......++..+|++.|+|..+++++|+++|...|..+.......+...+
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~km 454 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKM 454 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcce
Confidence 54333222110 000 01112335667999999999999999999999999887766666666669
Q ss_pred EEEEecChhhHHHHHHhcCCCeecCc
Q 022301 149 GIVDYTNYDDMKHAIKKLDDSEFRNA 174 (299)
Q Consensus 149 ~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (299)
|++++++.++|..|+..++...+++.
T Consensus 455 al~q~~sveeA~~ali~~hnh~lgen 480 (492)
T KOG1190|consen 455 ALPQLESVEEAIQALIDLHNHYLGEN 480 (492)
T ss_pred eecccCChhHhhhhccccccccCCCC
Confidence 99999999999999999999888765
No 48
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.75 E-value=6.4e-17 Score=135.89 Aligned_cols=170 Identities=24% Similarity=0.354 Sum_probs=134.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhh-hcCCeeEEEeecC--CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFY-KYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~i~~~~~--~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
..+.+||+|||+++.+.+|++||. +.|+|.+|.+..+ ++++|+|.|+|+++|.+++|++.||...+.|++|.|+...
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 356799999999999999999998 7899999999665 7899999999999999999999999999999999998755
Q ss_pred CCCCCCCC------------------------------------------CCC------CCCCCC---------------
Q 022301 82 GGRGRSSS------------------------------------------DRH------SSHSSG--------------- 98 (299)
Q Consensus 82 ~~~~~~~~------------------------------------------~~~------~~~~~~--------------- 98 (299)
........ ... .+....
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 32110000 000 000000
Q ss_pred ---CCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC---CEEEEEecChhhHHHHHHhcCCCeec
Q 022301 99 ---RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFR 172 (299)
Q Consensus 99 ---~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~ 172 (299)
....+..+-..++||.||.+.+....|.+.|.-.|+|..+.+-.++.+ ++|.|+|.++-+|-+||..|++.-+.
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~ 282 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLF 282 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCc
Confidence 001123345568999999999999999999999999999988877644 69999999999999999999986655
Q ss_pred Cc
Q 022301 173 NA 174 (299)
Q Consensus 173 g~ 174 (299)
..
T Consensus 283 ~~ 284 (608)
T KOG4212|consen 283 DR 284 (608)
T ss_pred cc
Confidence 54
No 49
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=4.2e-18 Score=119.54 Aligned_cols=80 Identities=38% Similarity=0.572 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEe---ecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~---~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
..++||||+||+..++||+|.+||+.+|+|..|.| ..+..+.|||||+|.+.++|..|+..++|+.++.++|.+.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 56899999999999999999999999999999999 334567899999999999999999999999999999999987
Q ss_pred cCC
Q 022301 81 HGG 83 (299)
Q Consensus 81 ~~~ 83 (299)
...
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 543
No 50
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.72 E-value=2.4e-16 Score=134.62 Aligned_cols=161 Identities=20% Similarity=0.273 Sum_probs=124.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC-CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCCC
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~-~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 84 (299)
.-.|.+.+||++||++||.++|+.|+ |..+.+..+ ++..|-|||+|.++|++.+|++ .+-..+..+.|.|..+....
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAE 87 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCcc
Confidence 34677889999999999999999985 788877554 8999999999999999999999 88888999999998775444
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeE-EEEEeC---CCCCEEEEEecChhhHH
Q 022301 85 GRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRD---GSGTTGIVDYTNYDDMK 160 (299)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-~~~~~~---~~~~~~fv~f~~~~~a~ 160 (299)
..-...... +........|-+.+||..++++||.++|.-.-.|.. +.+..+ +.++-|||+|++.+.|+
T Consensus 88 ~d~~~~~~g--------~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 88 ADWVMRPGG--------PNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAE 159 (510)
T ss_pred ccccccCCC--------CCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHH
Confidence 321111111 011135568899999999999999999998765554 333333 34568999999999999
Q ss_pred HHHHhcCCCeecCceee
Q 022301 161 HAIKKLDDSEFRNAFSR 177 (299)
Q Consensus 161 ~a~~~l~g~~~~g~~~~ 177 (299)
+|+. -|...|+.++++
T Consensus 160 ~Al~-rhre~iGhRYIE 175 (510)
T KOG4211|consen 160 IALG-RHRENIGHRYIE 175 (510)
T ss_pred HHHH-HHHHhhccceEE
Confidence 9998 566677777443
No 51
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.71 E-value=7.9e-17 Score=129.63 Aligned_cols=79 Identities=22% Similarity=0.323 Sum_probs=73.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCCCC
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRG 85 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 85 (299)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..++...|||||+|.++++|..||. |||..|.|+.|.|.++.....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~~ 82 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQL 82 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCCC
Confidence 6899999999999999999999999999999998777778999999999999999997 999999999999999875543
No 52
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.70 E-value=4.3e-17 Score=135.81 Aligned_cols=178 Identities=17% Similarity=0.239 Sum_probs=136.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCC--CCCCCceEEEEEc
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG--YDFDGHRLRVELA 80 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~--~~~~g~~i~v~~~ 80 (299)
..++..|+++|||++++|++|.+|+.+||.|..+.+. +.+..|||+|.++++|...+..+.. -.+.|.+|.|.|+
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~l---kGknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~s 101 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLML---KGKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYS 101 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeee---ccchhhhhhhcchhhhhheeecccccCccccCcceeehhh
Confidence 4689999999999999999999999999999999997 4466999999999999886664444 3466889999886
Q ss_pred cCCCCCCCCCCCC------------------CCCC-C--CCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE
Q 022301 81 HGGRGRSSSDRHS------------------SHSS-G--RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ 139 (299)
Q Consensus 81 ~~~~~~~~~~~~~------------------~~~~-~--~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~ 139 (299)
............. .... . .+.......-..++|.|+-+.++-+.|.++|+.||.|..+.
T Consensus 102 n~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIi 181 (492)
T KOG1190|consen 102 NHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKII 181 (492)
T ss_pred hHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEE
Confidence 5332211111100 0000 0 01122233445788899999999999999999999999988
Q ss_pred EEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCceeeEEEEec
Q 022301 140 VFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (299)
Q Consensus 140 ~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~~ 183 (299)
.+....+-.|.|+|.+.+.|+.|...|+|..|...+++..|...
T Consensus 182 TF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 182 TFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred EEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 88777766899999999999999999999999887777666543
No 53
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.70 E-value=2.9e-17 Score=108.92 Aligned_cols=68 Identities=44% Similarity=0.826 Sum_probs=63.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEE
Q 022301 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (299)
Q Consensus 9 l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~ 76 (299)
|||+|||+++|+++|.++|..||.|..+.+.. .+..+++|||+|.+.++|..|+..|||..|.|..|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999955 467789999999999999999999999999999874
No 54
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.70 E-value=1.1e-16 Score=108.14 Aligned_cols=81 Identities=36% Similarity=0.510 Sum_probs=75.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
....+..|||.|||.++|.|++.+||+.||.|..|.|-.+...+|.|||.|++..+|.+|+..|+|..+.+..|.|-+..
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 34568899999999999999999999999999999997777889999999999999999999999999999999998875
Q ss_pred C
Q 022301 82 G 82 (299)
Q Consensus 82 ~ 82 (299)
.
T Consensus 94 ~ 94 (124)
T KOG0114|consen 94 P 94 (124)
T ss_pred H
Confidence 4
No 55
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.70 E-value=1.4e-16 Score=143.93 Aligned_cols=127 Identities=21% Similarity=0.285 Sum_probs=100.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhc--CCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKY--GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
..++|||+||+.++|+++|+++|+.| |+|..|.+. ++||||+|.+.++|.+|+..||+..|.|+.|.|.|+++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 35789999999999999999999999 999999886 57999999999999999999999999999999999976
Q ss_pred CCCCCCCCCCCC---------CCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCee
Q 022301 83 GRGRSSSDRHSS---------HSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVC 136 (299)
Q Consensus 83 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~ 136 (299)
............ ...........+...++++.|++..++.+-+.++|..+|.|.
T Consensus 307 ~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 307 VDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred CCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCcccc
Confidence 543211100000 000001112333567899999999999999999999998765
No 56
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=2.6e-16 Score=137.66 Aligned_cols=182 Identities=20% Similarity=0.351 Sum_probs=134.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
...+.|||+|||..+++.++.+++..||++....+.. ++.++||||.+|.+...+..|+..|||+.+.++.|.|..+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 3567899999999999999999999999999988843 4678999999999999999999999999999999999988
Q ss_pred cCCCCCCCCCCC--C-CCCCCC--CCCCCCCCccEEEEeCC--CCCC-C-------HHHHHHHHHhcCCeeEEEEEeC-C
Q 022301 81 HGGRGRSSSDRH--S-SHSSGR--GRGVSRRSEYRVLVTGL--PSSA-S-------WQDLKDHMRRAGDVCFSQVFRD-G 144 (299)
Q Consensus 81 ~~~~~~~~~~~~--~-~~~~~~--~~~~~~~~~~~l~v~nl--~~~~-~-------~~~l~~~f~~~G~v~~~~~~~~-~ 144 (299)
............ + ...... ..+....+...|.+.|+ |.+. . .++++..|.+||.|..|.+... .
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~ 446 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYP 446 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCC
Confidence 765543332222 1 011111 11233334444555442 1111 1 2556677888999999999887 2
Q ss_pred ------CCCEEEEEecChhhHHHHHHhcCCCeecCceee-EEEEeccc
Q 022301 145 ------SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR-AYVRVREY 185 (299)
Q Consensus 145 ------~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~-~~~~~~~~ 185 (299)
..|..||+|.+.++++.|+..|+|.+++|+.+. .|+-++.+
T Consensus 447 ~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDkY 494 (500)
T KOG0120|consen 447 DENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDKY 494 (500)
T ss_pred CCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHHh
Confidence 235899999999999999999999999998743 34444444
No 57
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.68 E-value=1.1e-15 Score=121.03 Aligned_cols=81 Identities=23% Similarity=0.272 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 83 (299)
....||||+||++.+|+++|+++|+.||+|.+|.|..++...++|||+|.++++|..|+. |||..|.+..|.|..+...
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQY 81 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCccc
Confidence 455899999999999999999999999999999998888888999999999999999997 9999999999999987654
Q ss_pred CC
Q 022301 84 RG 85 (299)
Q Consensus 84 ~~ 85 (299)
..
T Consensus 82 ~~ 83 (243)
T PLN03121 82 ED 83 (243)
T ss_pred cc
Confidence 43
No 58
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.68 E-value=1.1e-15 Score=129.54 Aligned_cols=141 Identities=30% Similarity=0.530 Sum_probs=111.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
.++|||+|||..+|+++|.++|..||.|..+.+.. ++..+|||||+|.+.++|..|+..|+|..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 59999999999999999999999999999998854 478899999999999999999999999999999999999753
Q ss_pred --CCCCCCCC---CCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC
Q 022301 83 --GRGRSSSD---RHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG 146 (299)
Q Consensus 83 --~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~ 146 (299)
........ ....................+++.+++..+...++...|..+|.+..+.+......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDG 263 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCC
Confidence 11111110 00000111222344556788999999999999999999999999977666655543
No 59
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=6.2e-15 Score=121.46 Aligned_cols=75 Identities=25% Similarity=0.518 Sum_probs=68.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
=+.|||..+.++++++||+.+|+-||+|..|.+.. ....+||+||+|.+.+....|+..||-..+.|..|.|-.+
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 36899999999999999999999999999999943 3567999999999999999999999999999999999654
No 60
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=1.6e-14 Score=116.05 Aligned_cols=71 Identities=20% Similarity=0.229 Sum_probs=65.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
.+-.+|||.-|++++++..|+..|..||+|..|.|+.+..+ |||||+|++..+...|.+..+|.+|+|+.+
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 45579999999999999999999999999999999988544 599999999999999999999999999955
No 61
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=7e-16 Score=120.48 Aligned_cols=80 Identities=40% Similarity=0.642 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEe---ecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~---~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.++++|-|.||+.++++++|.+||.+||.|..|.| +.+|.++|||||.|...++|..||..|||.-++.-.|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 46889999999999999999999999999999999 446899999999999999999999999999999999999999
Q ss_pred cCC
Q 022301 81 HGG 83 (299)
Q Consensus 81 ~~~ 83 (299)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 753
No 62
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=1.1e-15 Score=108.51 Aligned_cols=79 Identities=27% Similarity=0.498 Sum_probs=73.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
.-.|||+++.+.+|+++|.+.|..||+|++|.++. +|-.+|||+|+|++.++|+.|+..|||..|.|+.|.|.|+..
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 34799999999999999999999999999999955 577899999999999999999999999999999999999875
Q ss_pred CC
Q 022301 83 GR 84 (299)
Q Consensus 83 ~~ 84 (299)
..
T Consensus 152 ~g 153 (170)
T KOG0130|consen 152 KG 153 (170)
T ss_pred cC
Confidence 44
No 63
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.62 E-value=1.1e-15 Score=101.21 Aligned_cols=68 Identities=34% Similarity=0.727 Sum_probs=60.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC--CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEE
Q 022301 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (299)
Q Consensus 9 l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~--~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~ 76 (299)
|||+|||+++++++|.++|..||.|..+.+... +..+++|||+|.++++|..|+..+++..|.|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999543 55679999999999999999999888999999874
No 64
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.62 E-value=2.6e-14 Score=107.72 Aligned_cols=73 Identities=22% Similarity=0.324 Sum_probs=66.4
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
.....++|||.|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|+.|++.|+|..|+|+.+
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l 106 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 345667999999999999999999999999999999998864 4699999999999999999999999999844
No 65
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.61 E-value=4.1e-15 Score=127.87 Aligned_cols=81 Identities=32% Similarity=0.529 Sum_probs=72.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCC--ceEEEEE
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVEL 79 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g--~~i~v~~ 79 (299)
..++|||+|||.++|+++|+++|++||+|+.|.|.. ++.+++||||+|.+.++|++||..||+..|.+ .+|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999999954 46778999999999999999999999998876 6899998
Q ss_pred ccCCCC
Q 022301 80 AHGGRG 85 (299)
Q Consensus 80 ~~~~~~ 85 (299)
+.....
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 876543
No 66
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.61 E-value=6.2e-14 Score=115.92 Aligned_cols=170 Identities=17% Similarity=0.203 Sum_probs=134.8
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 4 RASRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 4 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
-+.+.++|.+|... ++-+-|.++|+.||.|..|+++.+. .|.|+|++.+..+++.|+..||+..+.|.+|.|.+++.
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 46789999999775 7888899999999999999998765 57899999999999999999999999999999999875
Q ss_pred CCCCCCCC--------CCCCCCC----------CCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEeC
Q 022301 83 GRGRSSSD--------RHSSHSS----------GRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRD 143 (299)
Q Consensus 83 ~~~~~~~~--------~~~~~~~----------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~~~~~ 143 (299)
........ ....+.. .....-...+.+.|+..|.|..+|++.|.++|...+ ....++++..
T Consensus 363 ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~ 442 (494)
T KOG1456|consen 363 NFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPL 442 (494)
T ss_pred cccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeecc
Confidence 54322210 0000000 011223455788999999999999999999999877 3455677666
Q ss_pred CCCC--EEEEEecChhhHHHHHHhcCCCeecCce
Q 022301 144 GSGT--TGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (299)
Q Consensus 144 ~~~~--~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (299)
+... .+.++|++.++|..||..+|...|.+..
T Consensus 443 kserSssGllEfe~~s~Aveal~~~NH~pi~~p~ 476 (494)
T KOG1456|consen 443 KSERSSSGLLEFENKSDAVEALMKLNHYPIEGPN 476 (494)
T ss_pred cccccccceeeeehHHHHHHHHHHhccccccCCC
Confidence 5433 7999999999999999999999998864
No 67
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=1.7e-16 Score=118.35 Aligned_cols=84 Identities=26% Similarity=0.504 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEee---cCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~---~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.++.-|||+|||..+||.||.-+|++||+|++|.+. .||+++||||+.|+++-+...|+..|||..|.|+.|.|.+.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 467789999999999999999999999999999994 46899999999999999999999999999999999999998
Q ss_pred cCCCCCC
Q 022301 81 HGGRGRS 87 (299)
Q Consensus 81 ~~~~~~~ 87 (299)
.....+.
T Consensus 113 ~~Yk~pk 119 (219)
T KOG0126|consen 113 SNYKKPK 119 (219)
T ss_pred ccccCCc
Confidence 7666543
No 68
>smart00362 RRM_2 RNA recognition motif.
Probab=99.57 E-value=2.3e-14 Score=95.01 Aligned_cols=70 Identities=46% Similarity=0.848 Sum_probs=64.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC-CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEE
Q 022301 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (299)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~-~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v 77 (299)
+|||+|||.++++++|.++|..||+|..+.+..+ +.+.++|||+|.+.++|..|+..|++..+.|..|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 6899999999999999999999999999998654 456799999999999999999999999999998876
No 69
>PLN03213 repressor of silencing 3; Provisional
Probab=99.55 E-value=2e-14 Score=122.87 Aligned_cols=78 Identities=19% Similarity=0.385 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecCh--HHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA--RDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~--e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
....+||||||++.+|+++|..+|..||.|..|.|+... .+|||||+|.+. .++.+||..|||..+.|+.|+|+.++
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRET-GRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTK-GRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeccc-CCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 456789999999999999999999999999999997543 399999999987 78999999999999999999999886
Q ss_pred C
Q 022301 82 G 82 (299)
Q Consensus 82 ~ 82 (299)
+
T Consensus 87 P 87 (759)
T PLN03213 87 E 87 (759)
T ss_pred H
Confidence 3
No 70
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=2.4e-14 Score=116.45 Aligned_cols=81 Identities=23% Similarity=0.458 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC-CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~-~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
...+.|+|.|||...-+.||...|.+||+|.+|.|+.+ ..+||||||+|++.++|++|-.+|||..|.|++|.|+-+..
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 56789999999999999999999999999999999654 57899999999999999999999999999999999998865
Q ss_pred CC
Q 022301 83 GR 84 (299)
Q Consensus 83 ~~ 84 (299)
..
T Consensus 174 rV 175 (376)
T KOG0125|consen 174 RV 175 (376)
T ss_pred hh
Confidence 43
No 71
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.1e-14 Score=111.93 Aligned_cols=84 Identities=35% Similarity=0.612 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
+..+||||++|...+|+.-|...|-+||.|.+|.++.+ .+.+|||||+|...|+|..||..||+..|.|+.|.|+++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 56789999999999999999999999999999999654 678999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 022301 81 HGGRGRS 87 (299)
Q Consensus 81 ~~~~~~~ 87 (299)
.+.....
T Consensus 88 kP~kike 94 (298)
T KOG0111|consen 88 KPEKIKE 94 (298)
T ss_pred CCccccC
Confidence 8776543
No 72
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=2.6e-14 Score=111.37 Aligned_cols=75 Identities=25% Similarity=0.430 Sum_probs=67.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEee---cCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~---~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
++|||++|++.++.|.|+.+|++||+|++..|+ .++.++|||||+|.+.+.|..|++. -+-.|+|++..|+++.-
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 689999999999999999999999999999884 4578999999999999999999994 44678999999999865
No 73
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.52 E-value=1e-13 Score=91.70 Aligned_cols=66 Identities=20% Similarity=0.383 Sum_probs=60.4
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCC---CCCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 111 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 111 l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
|||+|||..+++++|.++|.+||.|..+.+..+. ..++|||+|.+.++|+.|++.|+|..++|+.+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~i 69 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKI 69 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCc
Confidence 7999999999999999999999999999999862 22599999999999999999999999999843
No 74
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.50 E-value=2.1e-13 Score=90.88 Aligned_cols=72 Identities=42% Similarity=0.815 Sum_probs=65.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCC--CCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP--RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~--~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
+|+|+|||..+++++|.++|..||+|..+.+..+. .+.++|||+|.+.++|..|+..+++..+.|..|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999996543 4578999999999999999999999999999998864
No 75
>smart00360 RRM RNA recognition motif.
Probab=99.48 E-value=2e-13 Score=90.07 Aligned_cols=67 Identities=45% Similarity=0.804 Sum_probs=61.6
Q ss_pred EcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEE
Q 022301 11 VGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (299)
Q Consensus 11 V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v 77 (299)
|+|||..+++++|+++|..||.|..+.+.. ++.++++|||+|.+.++|..|+..|++..+.|..|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 689999999999999999999999999954 3567899999999999999999999999999998887
No 76
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.48 E-value=1.9e-13 Score=86.07 Aligned_cols=56 Identities=38% Similarity=0.661 Sum_probs=51.0
Q ss_pred HHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 23 VEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 23 l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
|.++|++||+|..|.+..+. .++|||+|.+.++|..|+..|||..|.|+.|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997554 589999999999999999999999999999999985
No 77
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.47 E-value=3.6e-12 Score=107.68 Aligned_cols=75 Identities=21% Similarity=0.390 Sum_probs=63.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEe--ecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~--~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
-...+||.||...+..+.|++.|.-.|.|+.|.+ ...+.++|+|.|+|.++-+|..||..|++.-++..+..+.+
T Consensus 214 l~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 214 LHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred ccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 3468999999999999999999999999998888 44567889999999999999999998887666655555543
No 78
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2.4e-14 Score=117.56 Aligned_cols=81 Identities=23% Similarity=0.392 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEee---cCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~---~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.|.++|||..|++-+|.++|.-+|+.||+|..|.|+ .+|.+..||||+|.+.++|.+|+..|++..|..+.|.|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 588999999999999999999999999999999994 46788899999999999999999999999999999999998
Q ss_pred cCCC
Q 022301 81 HGGR 84 (299)
Q Consensus 81 ~~~~ 84 (299)
+...
T Consensus 317 QSVs 320 (479)
T KOG0415|consen 317 QSVS 320 (479)
T ss_pred hhhh
Confidence 6543
No 79
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.46 E-value=1.7e-12 Score=107.57 Aligned_cols=166 Identities=15% Similarity=0.199 Sum_probs=129.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHh--cCCCCCCCceEEEEEcc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG--RDGYDFDGHRLRVELAH 81 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~--l~~~~~~g~~i~v~~~~ 81 (299)
.++-.|.|.+|-..+++.+|.+.++.||+|..+.+.. .+..|+|+|++.+.|+.|+.. -+...+.|+...++++.
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P---~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NySt 105 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMP---HKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYST 105 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEecc---ccceeeeeeccccchhhheehhccCcccccCchhhcccch
Confidence 5677899999999999999999999999999999863 256899999999999999873 23466778888887774
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccEEE--EeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhH
Q 022301 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVL--VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDM 159 (299)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a 159 (299)
....... ......++..|. |.|--+.+|.+.|..++...|+|..|.|+.. ++-.|.|+|++.+.|
T Consensus 106 sq~i~R~------------g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~A 172 (494)
T KOG1456|consen 106 SQCIERP------------GDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEVA 172 (494)
T ss_pred hhhhccC------------CCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cceeeEEeechhHHH
Confidence 3321110 011222333343 4455667899999999999999999998877 445899999999999
Q ss_pred HHHHHhcCCCeecCceeeEEEEeccc
Q 022301 160 KHAIKKLDDSEFRNAFSRAYVRVREY 185 (299)
Q Consensus 160 ~~a~~~l~g~~~~g~~~~~~~~~~~~ 185 (299)
++|...|||..|....++..|...+.
T Consensus 173 qrAk~alNGADIYsGCCTLKIeyAkP 198 (494)
T KOG1456|consen 173 QRAKAALNGADIYSGCCTLKIEYAKP 198 (494)
T ss_pred HHHHhhcccccccccceeEEEEecCc
Confidence 99999999999988777777765543
No 80
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.44 E-value=5.2e-13 Score=110.85 Aligned_cols=175 Identities=17% Similarity=0.209 Sum_probs=119.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcC----CeeEEEe--ecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEE
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYG----PIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G----~v~~i~~--~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v 77 (299)
.+.-.|-+.+||.++|+.||.++|..-. .++.|.+ ..++...|-|||.|..+++|+.|+. -|...+..+.|.+
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIEl 237 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIEL 237 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHH
Confidence 3456778899999999999999996322 2334443 3478899999999999999999998 4544444444443
Q ss_pred EEccCCC------------CCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCC-eeE--EEEEe
Q 022301 78 ELAHGGR------------GRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD-VCF--SQVFR 142 (299)
Q Consensus 78 ~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~--~~~~~ 142 (299)
.-+.... -.+...............+......+|-+.+||+.++.++|.++|..|.. |.. |++..
T Consensus 238 FRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~ 317 (508)
T KOG1365|consen 238 FRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL 317 (508)
T ss_pred HHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE
Confidence 2211000 00000000000011122234445678999999999999999999999873 333 66666
Q ss_pred CCC---CCEEEEEecChhhHHHHHHhcCCCeecCceeeEE
Q 022301 143 DGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (299)
Q Consensus 143 ~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (299)
+.. .|-|||+|.+.+.|..|..+.+.+....++++++
T Consensus 318 N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 318 NGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred cCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 643 4689999999999999999999888888865544
No 81
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=4.7e-12 Score=109.42 Aligned_cols=158 Identities=22% Similarity=0.293 Sum_probs=108.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEe-ecC----CCCCc---eEEEEecChHHHHHHHHhcCCCCCCCceEE
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL-KIP----PRPPG---YAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~-~~~----~~~~g---~afV~F~~~e~A~~A~~~l~~~~~~g~~i~ 76 (299)
=++.||||+||++++|++|...|..||.+.--+- +.. -.++| |+|+.|+++..+...+..+.. ....+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~y 334 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNYY 334 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccceE
Confidence 3678999999999999999999999997643222 111 13455 999999999999887775443 333333
Q ss_pred EEEccCCCCCCCCCC----CCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEeCCC----CC
Q 022301 77 VELAHGGRGRSSSDR----HSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMR-RAGDVCFSQVFRDGS----GT 147 (299)
Q Consensus 77 v~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~G~v~~~~~~~~~~----~~ 147 (299)
+..+........-+. .....-.......-.+..+|||++||-.++.++|..+|. .||.|..+.|-.|+. .|
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkG 414 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKG 414 (520)
T ss_pred EEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCC
Confidence 333322222111000 000000001112334568999999999999999999999 699999999998853 46
Q ss_pred EEEEEecChhhHHHHHHh
Q 022301 148 TGIVDYTNYDDMKHAIKK 165 (299)
Q Consensus 148 ~~fv~f~~~~~a~~a~~~ 165 (299)
-|=|+|.+.....+||.+
T Consensus 415 aGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 415 AGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cceeeecccHHHHHHHhh
Confidence 799999999999999975
No 82
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=4.7e-13 Score=113.28 Aligned_cols=76 Identities=32% Similarity=0.569 Sum_probs=70.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCCCCC
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~ 86 (299)
..|||.||+.++|+|.|+++|++||.|..|+.. +.||||.|.+.++|.+|++.|||+.|.|..|.|.++++....
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-----rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-----RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecc-----cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 579999999999999999999999999999887 569999999999999999999999999999999999876544
Q ss_pred C
Q 022301 87 S 87 (299)
Q Consensus 87 ~ 87 (299)
.
T Consensus 335 k 335 (506)
T KOG0117|consen 335 K 335 (506)
T ss_pred c
Confidence 3
No 83
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=1.2e-12 Score=88.70 Aligned_cols=75 Identities=16% Similarity=0.200 Sum_probs=67.4
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC-CEEEEEecChhhHHHHHHhcCCCeecCceee
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG-TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~-~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (299)
.++..+..|||.|||..+|.+++-++|.+||+|..+.+-..+.+ |.|||.|++..+|.+|+++|.|..+++.++.
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~ 88 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLV 88 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEE
Confidence 34456678999999999999999999999999999999877655 6999999999999999999999999998543
No 84
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.41 E-value=8.4e-13 Score=115.25 Aligned_cols=78 Identities=33% Similarity=0.672 Sum_probs=73.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 83 (299)
++|||||||+++++++|.++|+..|.|.++++.. +|.++||||++|.+.++|..|+..|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999999955 4789999999999999999999999999999999999998754
Q ss_pred C
Q 022301 84 R 84 (299)
Q Consensus 84 ~ 84 (299)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 85
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=1.4e-12 Score=114.50 Aligned_cols=172 Identities=21% Similarity=0.321 Sum_probs=134.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhc-----------C-CeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCC
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKY-----------G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-----------G-~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~ 71 (299)
.....++|++||..++++.+..+|..- | .|..+.++ ..+++|||+|.+.++|..|+. +++..+.
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n---~~~nfa~ie~~s~~~at~~~~-~~~~~f~ 248 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN---LEKNFAFIEFRSISEATEAMA-LDGIIFE 248 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec---ccccceeEEecCCCchhhhhc-ccchhhC
Confidence 345679999999999999999999754 2 36667665 457899999999999999999 9999999
Q ss_pred CceEEEEEccCCCCCCCCCCCC----CCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC-
Q 022301 72 GHRLRVELAHGGRGRSSSDRHS----SHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG- 146 (299)
Q Consensus 72 g~~i~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~- 146 (299)
|..+++.-.......+...... .................++|++||..+++.++.|+...||.+....+..+...
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 9998886544433322221111 11222222334456789999999999999999999999999999888888664
Q ss_pred ---CEEEEEecChhhHHHHHHhcCCCeecCceeeEE
Q 022301 147 ---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (299)
Q Consensus 147 ---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (299)
||||.+|.+......|+..|||..+++..+.+.
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 599999999999999999999999999865433
No 86
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.40 E-value=2.4e-12 Score=103.95 Aligned_cols=69 Identities=14% Similarity=0.242 Sum_probs=63.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCC-CCCEEEEEecChhhHHHHHHhcCCCeecCceee
Q 022301 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (299)
Q Consensus 108 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~-~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (299)
..+|||+|||+.+++++|+++|+.||+|..|.|..+. ..+||||+|.+.++|+.|+. |+|..|.|+.+.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~ 73 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVT 73 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEE
Confidence 4699999999999999999999999999999999886 45799999999999999995 999999999553
No 87
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.38 E-value=5.1e-13 Score=107.12 Aligned_cols=76 Identities=42% Similarity=0.716 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
++++++|+|+||.+.|+.++|++.|++||+|++|.|. ++|+||.|.-.++|..|+..|||..|.|+.++|+.+..
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeee-----cceeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 3588999999999999999999999999999999998 78999999999999999999999999999999999764
Q ss_pred C
Q 022301 83 G 83 (299)
Q Consensus 83 ~ 83 (299)
.
T Consensus 150 r 150 (346)
T KOG0109|consen 150 R 150 (346)
T ss_pred c
Confidence 4
No 88
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=2e-12 Score=92.01 Aligned_cols=74 Identities=19% Similarity=0.301 Sum_probs=68.0
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCC----EEEEEecChhhHHHHHHhcCCCeecCceee
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGT----TGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~----~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (299)
....+|.|||+++...+++++|.+.|..||+|..+++..+..+| ||+|+|++..+|+.|+..|||..|.|..+.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 34567999999999999999999999999999999999998765 999999999999999999999999998543
No 89
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=1e-13 Score=106.64 Aligned_cols=142 Identities=20% Similarity=0.278 Sum_probs=115.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
...+||||+||...++++-|.+||-+-|+|..|.|.. ++..+ ||||.|.++..+..|+..|||..+.+..|+|.+-.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 4568999999999999999999999999999999954 44555 99999999999999999999999999999997653
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC---CCEEEEEecChhh
Q 022301 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDD 158 (299)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~---~~~~fv~f~~~~~ 158 (299)
.... .-|...++.+.+.+.|...|.+..+.+..+.. ..++|+.+.-...
T Consensus 86 G~sh----------------------------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~ 137 (267)
T KOG4454|consen 86 GNSH----------------------------APLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCA 137 (267)
T ss_pred CCCc----------------------------chhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhc
Confidence 2211 01455678888888999999998888877655 3489999888888
Q ss_pred HHHHHHhcCCCeecCc
Q 022301 159 MKHAIKKLDDSEFRNA 174 (299)
Q Consensus 159 a~~a~~~l~g~~~~g~ 174 (299)
...++...++.++.-+
T Consensus 138 ~P~~~~~y~~l~~~~~ 153 (267)
T KOG4454|consen 138 VPFALDLYQGLELFQK 153 (267)
T ss_pred CcHHhhhhcccCcCCC
Confidence 8888888777766543
No 90
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.37 E-value=2.8e-12 Score=84.82 Aligned_cols=65 Identities=23% Similarity=0.412 Sum_probs=58.8
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC---CCEEEEEecChhhHHHHHHhcCCCeecCce
Q 022301 111 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (299)
Q Consensus 111 l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (299)
|+|.|||..+++++|.++|..||.|..+.+..++. .++|||+|.+.++|..|++.++|..++|+.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~ 68 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRK 68 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEE
Confidence 78999999999999999999999999999999865 359999999999999999999999999984
No 91
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.37 E-value=1.6e-12 Score=116.92 Aligned_cols=79 Identities=30% Similarity=0.558 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 83 (299)
..++||||+.|+.++++.||.++|+.||+|+.|.|+ .+.++|||.+..-.+|.+|+.+|++..|.++.|+|.|+...
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li---~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI---PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeec---cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 468999999999999999999999999999999997 56899999999999999999999999999999999999765
Q ss_pred CC
Q 022301 84 RG 85 (299)
Q Consensus 84 ~~ 85 (299)
..
T Consensus 496 G~ 497 (894)
T KOG0132|consen 496 GP 497 (894)
T ss_pred Cc
Confidence 43
No 92
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=6.3e-12 Score=102.58 Aligned_cols=74 Identities=20% Similarity=0.238 Sum_probs=67.2
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC--CEEEEEecChhhHHHHHHhcCCCeecCceee
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG--TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~--~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (299)
.......|+|.|||....+-||..+|.+||.|.+|+|+.+..+ |||||+|++.++|++|-++|||..|.|+.++
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 3445678999999999999999999999999999999988654 7999999999999999999999999999544
No 93
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=9e-12 Score=93.60 Aligned_cols=78 Identities=17% Similarity=0.229 Sum_probs=67.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC-CCEEEEEecChhhHHHHHHhcCCCeecCceeeEEEEeccc
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~-~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~~~~ 185 (299)
....|||+|||.++.+.+|+++|-+||.|..|.+...+. ..||||+|+++.+|+.||..-+|..++|. .++|+..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~----rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGC----RLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcc----eEEEEec
Confidence 347899999999999999999999999999999876654 35999999999999999999999999999 5555555
Q ss_pred ccC
Q 022301 186 DHR 188 (299)
Q Consensus 186 ~~~ 188 (299)
+..
T Consensus 81 rgg 83 (241)
T KOG0105|consen 81 RGG 83 (241)
T ss_pred cCC
Confidence 444
No 94
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=4.6e-12 Score=89.40 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=68.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCceeeEEEEe
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~ 182 (299)
..++|||+||..-+++++|.++|.++|+|..|.+-.+..+ |||||+|...++|..|+..++|..++.+ .|.+
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr----~ir~ 110 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDR----PIRI 110 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccccc----ceee
Confidence 5689999999999999999999999999999988777654 5999999999999999999999999998 5665
Q ss_pred ccccc
Q 022301 183 REYDH 187 (299)
Q Consensus 183 ~~~~~ 187 (299)
+....
T Consensus 111 D~D~G 115 (153)
T KOG0121|consen 111 DWDAG 115 (153)
T ss_pred ecccc
Confidence 54433
No 95
>PLN03213 repressor of silencing 3; Provisional
Probab=99.33 E-value=9.3e-12 Score=106.83 Aligned_cols=71 Identities=15% Similarity=0.227 Sum_probs=65.6
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecCh--hhHHHHHHhcCCCeecCcee
Q 022301 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNY--DDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~--~~a~~a~~~l~g~~~~g~~~ 176 (299)
.....|||+||++.+++++|..+|..||.|..|.|+.....|||||+|... .++.+||..|||..+.|+.+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~L 80 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRL 80 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCcee
Confidence 345799999999999999999999999999999999887788999999987 68999999999999999944
No 96
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.33 E-value=1.4e-11 Score=97.91 Aligned_cols=69 Identities=20% Similarity=0.312 Sum_probs=63.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC-CEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG-TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~-~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
.+++|+|+||++.+++++|+++|..||+|..|.|+.+... ++|||+|++.++|+.|+. |+|..|.+..+
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I 73 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRV 73 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceE
Confidence 4589999999999999999999999999999999988654 599999999999999995 99999999853
No 97
>smart00361 RRM_1 RNA recognition motif.
Probab=99.31 E-value=8.2e-12 Score=82.33 Aligned_cols=58 Identities=28% Similarity=0.546 Sum_probs=51.3
Q ss_pred HHHHHHHhh----hcCCeeEEE-eec---C--CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEE
Q 022301 20 EREVEDLFY----KYGPIAHID-LKI---P--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (299)
Q Consensus 20 ~~~l~~~F~----~~G~v~~i~-~~~---~--~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v 77 (299)
+++|.++|. .||.|..|. |.. + +.++|||||+|.+.++|..|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578999998 999999985 422 3 678999999999999999999999999999999976
No 98
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=1.6e-12 Score=118.61 Aligned_cols=151 Identities=21% Similarity=0.316 Sum_probs=129.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC--CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~--~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
..+.|||++||+..+++.+|...|..+|.|..|.|..+ +....||||.|.+...+-.|...+.+..|....+++.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 46899999999999999999999999999999999554 4455799999999999999999899988876666655442
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHH
Q 022301 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKH 161 (299)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~ 161 (299)
. .....+.++|++|+.-+....|..+|..||.|..|.+-.... ||+|+|++...|+.
T Consensus 450 ~---------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~--yayi~yes~~~aq~ 506 (975)
T KOG0112|consen 450 P---------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQP--YAYIQYESPPAAQA 506 (975)
T ss_pred c---------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCc--ceeeecccCccchh
Confidence 1 233457899999999999999999999999999987766554 99999999999999
Q ss_pred HHHhcCCCeecCceee
Q 022301 162 AIKKLDDSEFRNAFSR 177 (299)
Q Consensus 162 a~~~l~g~~~~g~~~~ 177 (299)
|+..|-|..|+|....
T Consensus 507 a~~~~rgap~G~P~~r 522 (975)
T KOG0112|consen 507 ATHDMRGAPLGGPPRR 522 (975)
T ss_pred hHHHHhcCcCCCCCcc
Confidence 9999999999986543
No 99
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.9e-11 Score=100.73 Aligned_cols=80 Identities=19% Similarity=0.255 Sum_probs=72.5
Q ss_pred CCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCC----EEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 101 RGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGT----TGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 101 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~----~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
.+...++.+.|||+.|.+-++.++|.-+|+.||+|..|.|+.+..+| ||||+|++.+++++|.-+|++..|+.+
T Consensus 232 dAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDr-- 309 (479)
T KOG0415|consen 232 DADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR-- 309 (479)
T ss_pred ccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccc--
Confidence 34456688999999999999999999999999999999999999887 999999999999999999999999998
Q ss_pred eEEEEecc
Q 022301 177 RAYVRVRE 184 (299)
Q Consensus 177 ~~~~~~~~ 184 (299)
.|.|+.
T Consensus 310 --RIHVDF 315 (479)
T KOG0415|consen 310 --RIHVDF 315 (479)
T ss_pred --eEEeeh
Confidence 555443
No 100
>smart00362 RRM_2 RNA recognition motif.
Probab=99.29 E-value=3.8e-11 Score=79.28 Aligned_cols=66 Identities=21% Similarity=0.365 Sum_probs=60.5
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCC--CCCEEEEEecChhhHHHHHHhcCCCeecCce
Q 022301 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (299)
Q Consensus 110 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~--~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (299)
+|+|.|||..+++++|.++|.+||+|..+.+..+. ..++|||+|.+.++|+.|+..++|..+.|..
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~ 68 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRP 68 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEE
Confidence 48999999999999999999999999999888765 3469999999999999999999999999874
No 101
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=2e-11 Score=95.87 Aligned_cols=72 Identities=26% Similarity=0.320 Sum_probs=66.4
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCC----EEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGT----TGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~----~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
....++|-|.||+.++++.+|+++|.+||.|..+.+..++.+| ||||.|.+.++|.+||+.|||.-++.-++
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LIL 261 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLIL 261 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEE
Confidence 3366789999999999999999999999999999999998775 99999999999999999999999988744
No 102
>smart00360 RRM RNA recognition motif.
Probab=99.20 E-value=1.6e-10 Score=76.01 Aligned_cols=63 Identities=19% Similarity=0.374 Sum_probs=57.9
Q ss_pred EeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCce
Q 022301 113 VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (299)
Q Consensus 113 v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (299)
|.|||..+++++|.++|.+||.|..+.+..+.. .++|||+|.+.++|..|+..|++..+.|..
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~ 67 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRP 67 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcE
Confidence 578999999999999999999999999988765 469999999999999999999999998874
No 103
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.19 E-value=2.7e-10 Score=75.53 Aligned_cols=67 Identities=21% Similarity=0.380 Sum_probs=61.7
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC---CCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 110 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
+|+|.|||..+++++|.++|..+|.|..+.+..++. .++|||+|.+.++|..|++.+++..+.|..+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~ 70 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPL 70 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 478999999999999999999999999999998764 5799999999999999999999999998744
No 104
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.17 E-value=5.2e-11 Score=89.41 Aligned_cols=72 Identities=21% Similarity=0.212 Sum_probs=65.7
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCC----CCCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
.....+|||+||+..++++.|.++|-+.|+|+.++++.+. ..|||||+|.+.++|+.|++.|+...|.|+.+
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpI 81 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPI 81 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCcee
Confidence 3456899999999999999999999999999999999885 45799999999999999999999999999944
No 105
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.15 E-value=5.5e-12 Score=105.10 Aligned_cols=64 Identities=17% Similarity=0.163 Sum_probs=54.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCC
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~ 71 (299)
.+||+|++|+..+-..++.++|..+|+|....+.- +....+|.|+|....+...|+. ++|..+.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as-k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTAS-KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc-cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 37899999999999999999999999998888732 2334588999999999999999 7777665
No 106
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=2.1e-10 Score=94.56 Aligned_cols=77 Identities=31% Similarity=0.584 Sum_probs=68.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHh-cCCCCCCCceEEEEEcc
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG-RDGYDFDGHRLRVELAH 81 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~-l~~~~~~g~~i~v~~~~ 81 (299)
+....||||++|...+++.+|.+.|.+||+|..|.+. ..+++|||+|.+.+.|+.|... +|...|.|+.|+|.|..
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~---~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRIL---PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEee---cccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 3566899999999999999999999999999999996 3367999999999999998776 56677899999999987
Q ss_pred C
Q 022301 82 G 82 (299)
Q Consensus 82 ~ 82 (299)
.
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 6
No 107
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.11 E-value=3e-10 Score=87.19 Aligned_cols=80 Identities=28% Similarity=0.440 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhc-CCeeEEEe---ecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKY-GPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~v~~i~~---~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
.....+||.-||.-+-+.+|..+|.+| |.|..+.+ ..||.++|||||+|.+++.|.-|.+.||+-.|+|+.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345678999999999999999999988 77888888 56899999999999999999999999999999999999998
Q ss_pred ccCC
Q 022301 80 AHGG 83 (299)
Q Consensus 80 ~~~~ 83 (299)
..+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 7654
No 108
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.11 E-value=6e-11 Score=103.54 Aligned_cols=166 Identities=19% Similarity=0.180 Sum_probs=104.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
+-++.+|+|.|||..|++++|..+|+.||+|..|.+ +....|.+||+|.+.-+|+.|++.|++..+.|+.|+......
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~--t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~ 149 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE--TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGAR 149 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc--ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCccc
Confidence 457899999999999999999999999999999665 334578999999999999999999999999999998221111
Q ss_pred CCCCCCCCC--CCCCCCCCCCCCCCCC-ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhH
Q 022301 83 GRGRSSSDR--HSSHSSGRGRGVSRRS-EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDM 159 (299)
Q Consensus 83 ~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a 159 (299)
......... ...........++..+ ...++ +.|++..+..-++.++..+|.+..-....... .-|+.|.+..++
T Consensus 150 ~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~-g~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~h--q~~~~~~~~~s~ 226 (549)
T KOG4660|consen 150 RAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLF-GMLSPTRSSILLEHISSVDGSSPGRETPLLNH--QRFVEFADNRSY 226 (549)
T ss_pred ccchhcccchhhhhccchhhcCCCCCCcCCcce-eeeccchhhhhhhcchhccCccccccccchhh--hhhhhhccccch
Confidence 100000000 0000000111111111 12222 23888888877777888888766511111111 567778887777
Q ss_pred HHHHHhcCCCeecCc
Q 022301 160 KHAIKKLDDSEFRNA 174 (299)
Q Consensus 160 ~~a~~~l~g~~~~g~ 174 (299)
..++..+ |..+.+.
T Consensus 227 a~~~~~~-G~~~s~~ 240 (549)
T KOG4660|consen 227 AFSEPRG-GFLISNS 240 (549)
T ss_pred hhcccCC-ceecCCC
Confidence 4444422 4444443
No 109
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=1.2e-11 Score=92.72 Aligned_cols=73 Identities=16% Similarity=0.238 Sum_probs=66.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCC----EEEEEecChhhHHHHHHhcCCCeecCceeeEEEEec
Q 022301 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGT----TGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (299)
Q Consensus 108 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~----~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~~ 183 (299)
..-|||+|||+.+|+-||.-+|++||.|+.|.++.+..+| |||+.|++.....-|+..|||..|.|+ .|+|+
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gR----tirVD 110 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGR----TIRVD 110 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecce----eEEee
Confidence 3579999999999999999999999999999999998775 999999999999999999999999999 55554
Q ss_pred c
Q 022301 184 E 184 (299)
Q Consensus 184 ~ 184 (299)
.
T Consensus 111 H 111 (219)
T KOG0126|consen 111 H 111 (219)
T ss_pred e
Confidence 3
No 110
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.10 E-value=6.3e-10 Score=69.89 Aligned_cols=52 Identities=19% Similarity=0.381 Sum_probs=46.3
Q ss_pred HHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCceee
Q 022301 125 LKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (299)
Q Consensus 125 l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (299)
|.++|++||+|..+.+..+. .++|||+|.+.++|..|+..|||..++|+.+.
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~ 52 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLK 52 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 67899999999999998777 57999999999999999999999999998543
No 111
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.08 E-value=4.3e-09 Score=90.82 Aligned_cols=174 Identities=18% Similarity=0.227 Sum_probs=118.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeE-EEee--cCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAH-IDLK--IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-i~~~--~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
+.-+|-+.+||+.||++||.++|+.+-.|.. |.|. ..+.+.|-|||+|++.+.|++|+. -|...|.-+.|.|..+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhH
Confidence 5678999999999999999999998766655 3343 345678999999999999999998 66677777777775532
Q ss_pred CCCC-------------CCCCCC-----C-------------C-----------------------C---CCCC--CCCC
Q 022301 82 GGRG-------------RSSSDR-----H-------------S-----------------------S---HSSG--RGRG 102 (299)
Q Consensus 82 ~~~~-------------~~~~~~-----~-------------~-----------------------~---~~~~--~~~~ 102 (299)
.... +..... . . . .... ...+
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 0000 000000 0 0 0 0000 0000
Q ss_pred ----C-----------CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCC---CCCEEEEEecChhhHHHHHH
Q 022301 103 ----V-----------SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIK 164 (299)
Q Consensus 103 ----~-----------~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~ 164 (299)
+ ....+..++..+||...+..+|..+|...-.+ .|+|...+ .++-|+|+|.+.++|..|+.
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~edav~Ams 339 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDAVGAMG 339 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhhHhhhc
Confidence 0 00122567778999999999999999886555 55555444 34689999999999999997
Q ss_pred hcCCCeecCceeeEEEE
Q 022301 165 KLDDSEFRNAFSRAYVR 181 (299)
Q Consensus 165 ~l~g~~~~g~~~~~~~~ 181 (299)
-++..+..++++.+..
T Consensus 340 -kd~anm~hrYVElFln 355 (510)
T KOG4211|consen 340 -KDGANMGHRYVELFLN 355 (510)
T ss_pred -cCCcccCcceeeeccc
Confidence 6777788886555544
No 112
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=1.7e-10 Score=91.67 Aligned_cols=80 Identities=23% Similarity=0.493 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
-+.|.|||.-||.+..+.+|.+.|-.||.|++.++.. +..++.|+||.|.++.+|+.||..|||..|.-+.|+|.+.
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 5679999999999999999999999999999999955 4788999999999999999999999999999999999876
Q ss_pred cCC
Q 022301 81 HGG 83 (299)
Q Consensus 81 ~~~ 83 (299)
.++
T Consensus 363 RPk 365 (371)
T KOG0146|consen 363 RPK 365 (371)
T ss_pred Ccc
Confidence 543
No 113
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.05 E-value=7.5e-10 Score=86.74 Aligned_cols=76 Identities=14% Similarity=0.219 Sum_probs=63.5
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCceeeEEE
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~ 180 (299)
...-++|||++|++.+..+.|..+|++||+|+.+.|+.|+.+ |||||+|.+.+.|..|++..+ -.|+|+...+.+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccch
Confidence 345579999999999999999999999999999999999766 499999999999999998544 456776544344
Q ss_pred E
Q 022301 181 R 181 (299)
Q Consensus 181 ~ 181 (299)
.
T Consensus 88 A 88 (247)
T KOG0149|consen 88 A 88 (247)
T ss_pred h
Confidence 3
No 114
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.04 E-value=1.1e-09 Score=88.23 Aligned_cols=81 Identities=26% Similarity=0.498 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
....+|+|.|||+.|+++||++||..||.+..+.|++ .+.+.|.|-|.|...++|..|++.|||..+.|+.|++....
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 3457899999999999999999999999888888855 47788999999999999999999999999999999998765
Q ss_pred CCC
Q 022301 82 GGR 84 (299)
Q Consensus 82 ~~~ 84 (299)
...
T Consensus 161 ~~~ 163 (243)
T KOG0533|consen 161 SPS 163 (243)
T ss_pred Ccc
Confidence 443
No 115
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=3.1e-10 Score=87.70 Aligned_cols=70 Identities=21% Similarity=0.242 Sum_probs=64.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCC----CCCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
...+|||++|...+++..|...|-+||.|..|+++.+- ..+||||+|+..++|..||+.||+.+|.|+.+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Grti 82 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTI 82 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeE
Confidence 44799999999999999999999999999999998884 44699999999999999999999999999944
No 116
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.99 E-value=1.2e-09 Score=95.64 Aligned_cols=80 Identities=26% Similarity=0.485 Sum_probs=72.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
.+.|||.+|...+-..+|++||++||+|+..+|..+ +....|+||+|.+.++|.+||..||-+.|.|+.|.|+.+++
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 468999999999999999999999999999999543 45578999999999999999999999999999999999876
Q ss_pred CCC
Q 022301 83 GRG 85 (299)
Q Consensus 83 ~~~ 85 (299)
.+.
T Consensus 485 Ep~ 487 (940)
T KOG4661|consen 485 EPG 487 (940)
T ss_pred Ccc
Confidence 554
No 117
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.99 E-value=3.2e-09 Score=69.59 Aligned_cols=71 Identities=27% Similarity=0.416 Sum_probs=49.7
Q ss_pred CeEEEcCCCCCCCHHH----HHHHhhhcC-CeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 7 RTLYVGNLPGDIRERE----VEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~----l~~~F~~~G-~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
..|||.|||.+.+... |++|+..|| .|..|. .+.|+|.|.+++.|..|++.|+|..++|.+|.|.|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4699999999999876 566777887 666662 4689999999999999999999999999999999985
Q ss_pred CCC
Q 022301 82 GGR 84 (299)
Q Consensus 82 ~~~ 84 (299)
...
T Consensus 76 ~~r 78 (90)
T PF11608_consen 76 KNR 78 (90)
T ss_dssp -S-
T ss_pred Ccc
Confidence 443
No 118
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=4.2e-11 Score=109.12 Aligned_cols=136 Identities=23% Similarity=0.317 Sum_probs=115.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEe---ecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~---~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
..+++||.||++.+.+++|...|..+|.|..+.+ ...+..+|+|||+|..+++|.+|+. ++...+.|+
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~-f~d~~~~gK-------- 736 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA-FRDSCFFGK-------- 736 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh-hhhhhhhhh--------
Confidence 3468999999999999999999999998877766 3457789999999999999999999 555555552
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCC---CCCEEEEEecChhh
Q 022301 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDD 158 (299)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~---~~~~~fv~f~~~~~ 158 (299)
..++|.|+|...|.++|+.+|..+|.+..+.++... +.|.|+|.|.+..+
T Consensus 737 ---------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~ 789 (881)
T KOG0128|consen 737 ---------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEAD 789 (881)
T ss_pred ---------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcch
Confidence 367899999999999999999999999887665554 45799999999999
Q ss_pred HHHHHHhcCCCeecCcee
Q 022301 159 MKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 159 a~~a~~~l~g~~~~g~~~ 176 (299)
|..++...++..+.....
T Consensus 790 ~s~~~~s~d~~~~rE~~~ 807 (881)
T KOG0128|consen 790 ASRKVASVDVAGKRENNG 807 (881)
T ss_pred hhhhcccchhhhhhhcCc
Confidence 999999888887776643
No 119
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.98 E-value=5.7e-09 Score=88.14 Aligned_cols=69 Identities=22% Similarity=0.359 Sum_probs=64.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCC----CCCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 108 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
..+|||+|||..+++++|.++|..||.|..+.+..+. ..|||||+|.+.++|..|+..++|..|.|+.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~ 187 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPL 187 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCcee
Confidence 6899999999999999999999999999999998875 33699999999999999999999999999944
No 120
>smart00361 RRM_1 RNA recognition motif.
Probab=98.94 E-value=5.8e-09 Score=68.64 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=46.4
Q ss_pred HHHHHHHHH----hcCCeeEEE-EEeCC------CCCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 122 WQDLKDHMR----RAGDVCFSQ-VFRDG------SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 122 ~~~l~~~f~----~~G~v~~~~-~~~~~------~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
+++|.++|. +||.|..+. +..++ ..|||||+|.+.++|..|+..|||..++|+.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l 67 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTV 67 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 567888888 999999985 54443 24699999999999999999999999999854
No 121
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.93 E-value=8e-09 Score=71.38 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=61.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhh--cCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCCCCC----CceEEE
Q 022301 7 RTLYVGNLPGDIREREVEDLFYK--YGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFD----GHRLRV 77 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~--~G~v~~i~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~~~~~~----g~~i~v 77 (299)
+||+|.|||...|.++|.+++.. .|...-+.++.+ +.+.|||||.|.+++.|......++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 79999999999999999998874 356666666443 567899999999999999999999998775 556677
Q ss_pred EEcc
Q 022301 78 ELAH 81 (299)
Q Consensus 78 ~~~~ 81 (299)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7764
No 122
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.92 E-value=1.4e-10 Score=97.89 Aligned_cols=143 Identities=24% Similarity=0.423 Sum_probs=115.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhc--CCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCC-CCCCCceEEEEEccCC
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKY--GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG-YDFDGHRLRVELAHGG 83 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~-~~~~g~~i~v~~~~~~ 83 (299)
+.|||+||.+.++..+|..+|... |--..+.|. .|||||...+..-|.+|++.|+| ..+.|+.+.|.+.-..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-----~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-----SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-----cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 579999999999999999999743 222333333 58999999999999999999999 5688999999876432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE-eCCCCCEEEEEecChhhHHHH
Q 022301 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVF-RDGSGTTGIVDYTNYDDMKHA 162 (299)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~-~~~~~~~~fv~f~~~~~a~~a 162 (299)
. .....+-|.|+|+...++.|..++..||.+..|... .+..+...-|+|.+.+.+..|
T Consensus 77 k---------------------qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~a 135 (584)
T KOG2193|consen 77 K---------------------QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQA 135 (584)
T ss_pred H---------------------HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 2 233568899999999999999999999999887553 333333555789999999999
Q ss_pred HHhcCCCeecCce
Q 022301 163 IKKLDDSEFRNAF 175 (299)
Q Consensus 163 ~~~l~g~~~~g~~ 175 (299)
|.+|+|..+...-
T Consensus 136 i~kl~g~Q~en~~ 148 (584)
T KOG2193|consen 136 IHKLNGPQLENQH 148 (584)
T ss_pred HHhhcchHhhhhh
Confidence 9999999998753
No 123
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.91 E-value=2.5e-09 Score=89.53 Aligned_cols=159 Identities=20% Similarity=0.248 Sum_probs=120.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCC-CCCCceEEEEEc
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGY-DFDGHRLRVELA 80 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~-~~~g~~i~v~~~ 80 (299)
..+++|++++..++.+.++..+|..+|.+....+.. ....+++++|.|...+++..|+. +.+. .+.+..+...+.
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH-hhhccccccccccCccc
Confidence 467899999999999999999999999877776622 35678999999999999999999 6664 555555444333
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCccEEE-EeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCC----EEEEEecC
Q 022301 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVL-VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGT----TGIVDYTN 155 (299)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~----~~fv~f~~ 155 (299)
......... ...........+++ |.+|+..++.++|..+|..+|.|..+.+......+ ||||.|..
T Consensus 166 ~~~~~~~~n---------~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~ 236 (285)
T KOG4210|consen 166 TRRGLRPKN---------KLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSA 236 (285)
T ss_pred ccccccccc---------hhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhh
Confidence 322210000 01112222334455 99999999999999999999999999999887764 89999999
Q ss_pred hhhHHHHHHhcCCCeecCc
Q 022301 156 YDDMKHAIKKLDDSEFRNA 174 (299)
Q Consensus 156 ~~~a~~a~~~l~g~~~~g~ 174 (299)
...+..++.. +...+.+.
T Consensus 237 ~~~~~~~~~~-~~~~~~~~ 254 (285)
T KOG4210|consen 237 GNSKKLALND-QTRSIGGR 254 (285)
T ss_pred chhHHHHhhc-ccCcccCc
Confidence 9999999987 78788776
No 124
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.91 E-value=1.1e-09 Score=91.91 Aligned_cols=82 Identities=26% Similarity=0.540 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
.+.+|||++||.++++++|++.|.+||.|..+.++.+ ...+||+||.|.+++.+.+++. +.-+.|.|+.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 3569999999999999999999999999988888554 5678999999999999999998 88899999999999887
Q ss_pred CCCCCC
Q 022301 82 GGRGRS 87 (299)
Q Consensus 82 ~~~~~~ 87 (299)
+.....
T Consensus 175 pk~~~~ 180 (311)
T KOG4205|consen 175 PKEVMQ 180 (311)
T ss_pred chhhcc
Confidence 665443
No 125
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.87 E-value=5.2e-09 Score=91.18 Aligned_cols=75 Identities=32% Similarity=0.606 Sum_probs=65.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
.+|||.|||.++++.+|+++|..||+|+...|.. .++...||||+|.+.++++.||. -+-..+.++.|.|+.-..
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEeccc
Confidence 4599999999999999999999999999888833 24444899999999999999999 678889999999987654
No 126
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.87 E-value=6.2e-09 Score=91.30 Aligned_cols=68 Identities=22% Similarity=0.313 Sum_probs=64.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCC----EEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGT----TGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~----~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
..+||+|+|+++++++|.++|...|.|..++++.|..+| |||++|.+.++|..|+..|||.++.|+.+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l 90 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKL 90 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceE
Confidence 799999999999999999999999999999999997664 99999999999999999999999999944
No 127
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.85 E-value=9.4e-09 Score=92.25 Aligned_cols=79 Identities=27% Similarity=0.454 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC------CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEE
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP------PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~------~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v 77 (299)
-.++.|||+||++.++++.|...|+.||+|..|+|++. .....+|||.|-+-.+|+.|+..|+|..+.+..+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 45788999999999999999999999999999999663 234579999999999999999999999999999999
Q ss_pred EEccC
Q 022301 78 ELAHG 82 (299)
Q Consensus 78 ~~~~~ 82 (299)
-|.+.
T Consensus 252 gWgk~ 256 (877)
T KOG0151|consen 252 GWGKA 256 (877)
T ss_pred ccccc
Confidence 99853
No 128
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.81 E-value=7.5e-09 Score=83.78 Aligned_cols=79 Identities=25% Similarity=0.411 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.+...+||+|+...+|.++|...|..||.|..+.|.. .++++|||||+|.+.+.+..|+. |||..|.|..+.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 5678999999999999999999999999998777743 46789999999999999999999 9999999999999887
Q ss_pred cCC
Q 022301 81 HGG 83 (299)
Q Consensus 81 ~~~ 83 (299)
...
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 644
No 129
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.80 E-value=3.3e-08 Score=86.76 Aligned_cols=80 Identities=20% Similarity=0.321 Sum_probs=69.9
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC-C---EEEEEecChhhHHHHHHhcCCCeecCceeeEEE
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG-T---TGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~-~---~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~ 180 (299)
...+.+|+|.+|...+...+|+.+|.+||+|+-++|+.+... | |+||+|.+.++|.++|+.||..+|.|+ +|
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGr----mI 477 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGR----MI 477 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcce----ee
Confidence 345678999999999999999999999999999999888533 2 999999999999999999999999999 77
Q ss_pred EecccccC
Q 022301 181 RVREYDHR 188 (299)
Q Consensus 181 ~~~~~~~~ 188 (299)
.|......
T Consensus 478 SVEkaKNE 485 (940)
T KOG4661|consen 478 SVEKAKNE 485 (940)
T ss_pred eeeecccC
Confidence 77665543
No 130
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.69 E-value=3.7e-07 Score=76.60 Aligned_cols=166 Identities=17% Similarity=0.212 Sum_probs=110.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCee---EEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIA---HIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~---~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.++..|-..+||+..++.+|..+|.-.-... .+-+...+.-.|.|.|.|.++|.-+.|++ -+...+.++.|.|.-+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeecc
Confidence 5677788899999999999999997543221 12223345557899999999999999999 6777888888888765
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHh---c-C---CeeEEEEEeCCCCCEEEEEe
Q 022301 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRR---A-G---DVCFSQVFRDGSGTTGIVDY 153 (299)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~---~-G---~v~~~~~~~~~~~~~~fv~f 153 (299)
.....-....... ..............|-..+||.+.++.++.++|.. . | .|..|.-..+..+|-|||.|
T Consensus 137 ~ge~f~~iagg~s---~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlf 213 (508)
T KOG1365|consen 137 TGEEFLKIAGGTS---NEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLF 213 (508)
T ss_pred CchhheEecCCcc---ccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEe
Confidence 4332211110000 00001112223345666799999999999999963 1 2 33344444556678999999
Q ss_pred cChhhHHHHHHhcCCCeecCc
Q 022301 154 TNYDDMKHAIKKLDDSEFRNA 174 (299)
Q Consensus 154 ~~~~~a~~a~~~l~g~~~~g~ 174 (299)
..+++|+.|+.+ |...|+-+
T Consensus 214 a~ee~aq~aL~k-hrq~iGqR 233 (508)
T KOG1365|consen 214 ACEEDAQFALRK-HRQNIGQR 233 (508)
T ss_pred cCHHHHHHHHHH-HHHHHhHH
Confidence 999999999974 33444444
No 131
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.67 E-value=1.1e-07 Score=74.53 Aligned_cols=69 Identities=13% Similarity=0.172 Sum_probs=62.2
Q ss_pred ccEEEEeCCCCCCCHHHHHH----HHHhcCCeeEEEEEeC-CCCCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 108 EYRVLVTGLPSSASWQDLKD----HMRRAGDVCFSQVFRD-GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 108 ~~~l~v~nl~~~~~~~~l~~----~f~~~G~v~~~~~~~~-~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
..+|||.||+..+..++|+. +|++||+|..|.+... +-.|.|||.|.+.+.|-.|+..|+|..+.|+..
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 34999999999999999888 9999999999888755 455799999999999999999999999999854
No 132
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.59 E-value=5.1e-08 Score=75.89 Aligned_cols=66 Identities=29% Similarity=0.440 Sum_probs=56.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCC
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~ 70 (299)
..-.||||.||.++|||++|+++|+.|-...-++|...+. ...||++|.+.+.|..|+..|+|..|
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g-~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGG-MPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCC-cceEeecHHHHHHHHHHHHHhhccee
Confidence 3456899999999999999999999998888888854333 45899999999999999999998665
No 133
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.59 E-value=2.5e-07 Score=83.13 Aligned_cols=168 Identities=11% Similarity=-0.006 Sum_probs=115.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEe--ec-CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~--~~-~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
+.+.+-+.+++.+....++.++|... .|..+.| .. .+-..|-++|+|....++++|+. -|...+-.+.+.|-.+-
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCC
Confidence 34556667899999999999999643 2444444 22 23337899999999999999998 67777778888886543
Q ss_pred CCCCCCCCCCC---------------CCC-----CCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeE-EEE
Q 022301 82 GGRGRSSSDRH---------------SSH-----SSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQV 140 (299)
Q Consensus 82 ~~~~~~~~~~~---------------~~~-----~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-~~~ 140 (299)
........... ... ..+.....+...+.+|||..||..++..++..+|...-.|++ |.+
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 32211111000 000 011112245557789999999999999999999999888877 555
Q ss_pred EeCCC---CCEEEEEecChhhHHHHHHhcCCCeecCc
Q 022301 141 FRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (299)
Q Consensus 141 ~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (299)
...+. .+.|||.|...+++..|...-+...++.+
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r 504 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHR 504 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCce
Confidence 44443 34899999999988888875555555555
No 134
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.58 E-value=2.4e-07 Score=74.96 Aligned_cols=74 Identities=24% Similarity=0.301 Sum_probs=65.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC---CEEEEEecChhhHHHHHHhcCCCeecCceeeEEE
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~ 180 (299)
....|+|.|||+.|.++||+++|..||.+..+.+..++.+ |.|-|.|...++|..|++.++|..++|......+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3478999999999999999999999999988888888766 6999999999999999999999999999654333
No 135
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.57 E-value=1.4e-07 Score=74.85 Aligned_cols=154 Identities=14% Similarity=0.196 Sum_probs=109.1
Q ss_pred EEEcCCCCCCCHHH---HHHHhhhcCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 022301 9 LYVGNLPGDIRERE---VEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (299)
Q Consensus 9 l~V~nLp~~~t~~~---l~~~F~~~G~v~~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 83 (299)
+++.|+-..+..+- +...|+.|-.+....+.. .+.-.+++|+.|.....-.++...-+++.+.-.+|++ +...
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~--a~gt 176 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL--AAGT 176 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceee--cccc
Confidence 34555545444443 256666665555555532 2455689999999888777787766777766655443 2221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhH
Q 022301 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDM 159 (299)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a 159 (299)
.... .....-......||.+.|..+++.+.|...|.+|-.....+++.+..+ ||+||.|.+..++
T Consensus 177 swed-----------Psl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~ 245 (290)
T KOG0226|consen 177 SWED-----------PSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADY 245 (290)
T ss_pred ccCC-----------cccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHH
Confidence 1110 011122345579999999999999999999999999988888888655 5999999999999
Q ss_pred HHHHHhcCCCeecCce
Q 022301 160 KHAIKKLDDSEFRNAF 175 (299)
Q Consensus 160 ~~a~~~l~g~~~~g~~ 175 (299)
..|+..|+|+.++.+.
T Consensus 246 ~rAmrem~gkyVgsrp 261 (290)
T KOG0226|consen 246 VRAMREMNGKYVGSRP 261 (290)
T ss_pred HHHHHhhcccccccch
Confidence 9999999999999874
No 136
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.57 E-value=1.1e-07 Score=75.06 Aligned_cols=63 Identities=22% Similarity=0.334 Sum_probs=59.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCce
Q 022301 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (299)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (299)
..+||++||+.+.+.+|+.+|..||.|..+.+... |+||+|++..+|..|+..|||..|.|..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~g----f~fv~fed~rda~Dav~~l~~~~l~~e~ 64 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKNG----FGFVEFEDPRDADDAVHDLDGKELCGER 64 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeecc----cceeccCchhhhhcccchhcCceeccee
Confidence 46899999999999999999999999999888765 9999999999999999999999999985
No 137
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.48 E-value=3.9e-07 Score=64.59 Aligned_cols=69 Identities=17% Similarity=0.343 Sum_probs=43.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCC-----CCCCceEEEE
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY-----DFDGHRLRVE 78 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~-----~~~g~~i~v~ 78 (299)
+.|+|.+++..++-++|+++|..||+|..|.+.. .-..|||-|.+++.|+.|+..+... .+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~---G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR---GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T---T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC---CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 5799999999999999999999999999999963 3458999999999999998876544 4445554443
No 138
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.47 E-value=7e-07 Score=74.12 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=63.3
Q ss_pred CCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHh-cCCCeecCcee
Q 022301 100 GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKK-LDDSEFRNAFS 176 (299)
Q Consensus 100 ~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~-l~g~~~~g~~~ 176 (299)
..++....-.+|||++|...+++.+|.++|.+||+|..+.+..... +|||+|.+.+.|+.|.++ ++-..|+|..+
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~--CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKG--CAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccc--cceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 3456666778999999999999999999999999999998887654 999999999999877766 56667788733
No 139
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.45 E-value=7.2e-07 Score=81.30 Aligned_cols=70 Identities=16% Similarity=0.252 Sum_probs=62.9
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
....++|+|++|+..+++.||..+|+.||.|..|.++... ++|||.+....+|.+|+.+|....+.++.+
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R--~cAfI~M~~RqdA~kalqkl~n~kv~~k~I 487 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR--GCAFIKMVRRQDAEKALQKLSNVKVADKTI 487 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC--ceeEEEEeehhHHHHHHHHHhcccccceee
Confidence 3467899999999999999999999999999998887654 599999999999999999999988888754
No 140
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=98.45 E-value=1.5e-06 Score=76.94 Aligned_cols=75 Identities=12% Similarity=0.228 Sum_probs=64.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhh-hcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCC---CCceEEEEE
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFY-KYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF---DGHRLRVEL 79 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~---~g~~i~v~~ 79 (299)
.+++.|||.||-.-.|..+|++|+. .+|.|.+.+|. +-+..|||.|.+.++|.+..+.|||..+ .++.|.+.|
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD---kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD---KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHH---HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 5789999999999999999999999 78888888773 2266999999999999999999999876 367888888
Q ss_pred cc
Q 022301 80 AH 81 (299)
Q Consensus 80 ~~ 81 (299)
..
T Consensus 519 ~~ 520 (718)
T KOG2416|consen 519 VR 520 (718)
T ss_pred cc
Confidence 54
No 141
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.44 E-value=9.5e-07 Score=68.24 Aligned_cols=78 Identities=15% Similarity=0.155 Sum_probs=65.5
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCceee
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRA-GDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~-G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (299)
+.......++|..+|..+.+.+|..+|.++ |.|..+.+..+..+ |||||+|++.+.|+-|.+.||++-+.|+.+.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 445556789999999999999999999998 56667777677655 4999999999999999999999999999775
Q ss_pred EEE
Q 022301 178 AYV 180 (299)
Q Consensus 178 ~~~ 180 (299)
+.+
T Consensus 124 c~v 126 (214)
T KOG4208|consen 124 CHV 126 (214)
T ss_pred eEE
Confidence 444
No 142
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.42 E-value=1.2e-07 Score=73.55 Aligned_cols=73 Identities=15% Similarity=0.108 Sum_probs=65.4
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC--CEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG--TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~--~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
..+...+|||.|+...++++-|.++|-+.|+|+.|.|..+... .||||.|+++....-|++.+||..+.+..+
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~ 79 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEE 79 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchh
Confidence 3445679999999999999999999999999999999887654 399999999999999999999999998754
No 143
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.41 E-value=3.3e-07 Score=72.86 Aligned_cols=76 Identities=18% Similarity=0.411 Sum_probs=67.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEe---ecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~---~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
+.-.||.+.|..+++++.|...|.+|-.....++ ..+++++||+||-|.+.+++..|+..|||..++.++|++..+
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 4567999999999999999999999987766666 557899999999999999999999999999999999988654
No 144
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.36 E-value=3.1e-06 Score=74.08 Aligned_cols=67 Identities=18% Similarity=0.281 Sum_probs=55.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeC----CCCCEEEEEecChhhHHHHHHhcCCCeecCc
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD----GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~----~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (299)
....|||.|||.+++..+|+++|..||.|....|..- ....||||+|++..+++.||++- -..|+++
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~ 357 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGR 357 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCe
Confidence 3445999999999999999999999999987666553 23359999999999999999955 6677777
No 145
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.32 E-value=6.4e-07 Score=78.85 Aligned_cols=71 Identities=18% Similarity=0.179 Sum_probs=62.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
.....+|+|.|||..|+.++|.++|+.||+|..+...... .+.+||+|.+..+|+.|++.|++.+|.|+.+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~ 142 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-RGIVFVEFYDVRDAERALKALNRREIAGKRI 142 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-CceEEEEEeehHhHHHHHHHHHHHHhhhhhh
Confidence 4456799999999999999999999999999986554443 3599999999999999999999999999854
No 146
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.30 E-value=5e-06 Score=69.12 Aligned_cols=85 Identities=25% Similarity=0.443 Sum_probs=70.5
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEeCCCC---CEEEEEecChhhHHHHHHhcCCCee
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEF 171 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--------~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~ 171 (299)
+....++.|||.|||.++|.+++.++|.+||.|.. |++..+..+ |=|.|.|...+...-|++.|++..+
T Consensus 129 ~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 129 PEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred cccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccc
Confidence 34556778999999999999999999999997743 677777654 4699999999999999999999999
Q ss_pred cCceeeEEEEecccccCCCC
Q 022301 172 RNAFSRAYVRVREYDHRRDG 191 (299)
Q Consensus 172 ~g~~~~~~~~~~~~~~~~~~ 191 (299)
.|+ .++|..+.....+
T Consensus 209 rg~----~~rVerAkfq~Kg 224 (382)
T KOG1548|consen 209 RGK----KLRVERAKFQMKG 224 (382)
T ss_pred cCc----EEEEehhhhhhcc
Confidence 999 7777766665443
No 147
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.26 E-value=5.8e-07 Score=71.74 Aligned_cols=61 Identities=25% Similarity=0.432 Sum_probs=52.5
Q ss_pred HHHHHHhh-hcCCeeEEEee--cCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 21 REVEDLFY-KYGPIAHIDLK--IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 21 ~~l~~~F~-~~G~v~~i~~~--~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
++|...|. +||+|+++.|- ...+..|.+||+|..+++|++|+..||+.+|.|++|.++++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 55666666 99999999883 334667999999999999999999999999999999998874
No 148
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.24 E-value=4.1e-06 Score=75.76 Aligned_cols=73 Identities=18% Similarity=0.165 Sum_probs=65.4
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC-------CCEEEEEecChhhHHHHHHhcCCCeecCce
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-------GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~-------~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (299)
...+..++|||+||++.++++.|...|..||+|..++|+.... ..+|||.|-+..+|+.|++.|+|..+.+..
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 3456778999999999999999999999999999999988753 249999999999999999999999998763
No 149
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.21 E-value=1.3e-05 Score=52.90 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=45.9
Q ss_pred cEEEEeCCCCCCCHHH----HHHHHHhcC-CeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCceeeEEEEec
Q 022301 109 YRVLVTGLPSSASWQD----LKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (299)
Q Consensus 109 ~~l~v~nl~~~~~~~~----l~~~f~~~G-~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~~ 183 (299)
..|+|.|||.+.+... |++++..+| +|..+. ++.|+|.|.+.+.|..|.+.|+|..+.|. .|.+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~------~~tAilrF~~~~~A~RA~KRmegEdVfG~----kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS------GGTAILRFPNQEFAERAQKRMEGEDVFGN----KISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS------EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe------CCEEEEEeCCHHHHHHHHHhhcccccccc----eEEEE
Confidence 5799999999988654 566777787 665552 35899999999999999999999999999 55555
Q ss_pred cc
Q 022301 184 EY 185 (299)
Q Consensus 184 ~~ 185 (299)
..
T Consensus 73 ~~ 74 (90)
T PF11608_consen 73 FS 74 (90)
T ss_dssp SS
T ss_pred Ec
Confidence 44
No 150
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.21 E-value=1.7e-05 Score=54.91 Aligned_cols=66 Identities=15% Similarity=0.155 Sum_probs=57.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCc
Q 022301 109 YRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (299)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~--G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (299)
++|.|.|||...+.++|.+++... |....+.++.|-. .|||||.|.+++.|..-.+.++|..+..-
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~ 73 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNF 73 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccC
Confidence 689999999999999999998773 6666777777743 47999999999999999999999999753
No 151
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.19 E-value=1.8e-06 Score=72.23 Aligned_cols=81 Identities=31% Similarity=0.472 Sum_probs=69.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCee--------EEEe---ecCCCCCceEEEEecChHHHHHHHHhcCCCCCCC
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIA--------HIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--------~i~~---~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g 72 (299)
..+.+|||-+||.++++++|.++|.+||.|. .|+| +.|+.+++-|.|.|.+...|+.|+..++++.|.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3467999999999999999999999999773 2223 3467889999999999999999999999999999
Q ss_pred ceEEEEEccCCC
Q 022301 73 HRLRVELAHGGR 84 (299)
Q Consensus 73 ~~i~v~~~~~~~ 84 (299)
..|+|.++....
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999998876544
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.18 E-value=3.6e-06 Score=59.67 Aligned_cols=59 Identities=22% Similarity=0.449 Sum_probs=39.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCC
Q 022301 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS 169 (299)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~ 169 (299)
+.|+|.+++..++.++|+++|..||.|.+|.+..... .|||.|.+.+.|+.|+.++...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence 5788999999999999999999999999998877654 8999999999999999887544
No 153
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.17 E-value=5.7e-06 Score=50.73 Aligned_cols=53 Identities=28% Similarity=0.553 Sum_probs=44.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHH
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAI 62 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~ 62 (299)
++.|-|.+.+++..+ +|...|..||+|..+.+. .....+||.|.+..+|+.||
T Consensus 1 ~~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~---~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP---ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC---CCCcEEEEEECCHHHHHhhC
Confidence 467899999988774 455588899999999886 33569999999999999985
No 154
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.13 E-value=7.2e-06 Score=67.91 Aligned_cols=76 Identities=24% Similarity=0.445 Sum_probs=61.5
Q ss_pred CCeEEEcCCCCCCCHHH----H--HHHhhhcCCeeEEEeecCC----CCCceE--EEEecChHHHHHHHHhcCCCCCCCc
Q 022301 6 SRTLYVGNLPGDIRERE----V--EDLFYKYGPIAHIDLKIPP----RPPGYA--FVEFEEARDAEDAIRGRDGYDFDGH 73 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~----l--~~~F~~~G~v~~i~~~~~~----~~~g~a--fV~F~~~e~A~~A~~~l~~~~~~g~ 73 (299)
.+-+||-+||+.+..|+ | .++|++||.|..|.|+... ...+.+ ||.|.+.|+|..||...+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45689999999887776 2 3799999999999994321 112233 9999999999999999999999999
Q ss_pred eEEEEEcc
Q 022301 74 RLRVELAH 81 (299)
Q Consensus 74 ~i~v~~~~ 81 (299)
.|+..|..
T Consensus 194 ~lkatYGT 201 (480)
T COG5175 194 VLKATYGT 201 (480)
T ss_pred eEeeecCc
Confidence 99998743
No 155
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.07 E-value=2.1e-05 Score=71.18 Aligned_cols=76 Identities=22% Similarity=0.379 Sum_probs=65.2
Q ss_pred CCCC-eEEEcCCCCCCCHHHHHHHhhhcCCe-eEEEe--ecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 4 RASR-TLYVGNLPGDIREREVEDLFYKYGPI-AHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 4 ~~~~-~l~V~nLp~~~t~~~l~~~F~~~G~v-~~i~~--~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
.+-+ +|-+.|+|.+++.+||.++|.-|-.+ .+|.+ ..+|...|-|.|.|++.++|..|+..|++..|..++|.|.+
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3444 88999999999999999999999765 33444 55688999999999999999999999999999999988754
No 156
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.99 E-value=7.2e-06 Score=68.21 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=62.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcC--CeeEEEe---ecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYG--PIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G--~v~~i~~---~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
-++||+||-+++|++||.+.+...| .|.++++ ..+|+++|||+|...+...+++.++.|-.+.|.|+.-.|..+
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 4689999999999999999998777 4566666 335899999999999999999999999999999987777543
No 157
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.96 E-value=1.1e-05 Score=68.90 Aligned_cols=73 Identities=29% Similarity=0.281 Sum_probs=58.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC--------CC--------CCceEEEEecChHHHHHHHHhcCCC
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP--------PR--------PPGYAFVEFEEARDAEDAIRGRDGY 68 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~--------~~--------~~g~afV~F~~~e~A~~A~~~l~~~ 68 (299)
+++||.+.|||.+-.-+.|.+||+.||.|..|.|... +. .+-+|||+|.+.+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 6899999999999888999999999999999999443 11 2467999999999999999977664
Q ss_pred CCCCceEEE
Q 022301 69 DFDGHRLRV 77 (299)
Q Consensus 69 ~~~g~~i~v 77 (299)
..+-.-|+|
T Consensus 310 ~~wr~glkv 318 (484)
T KOG1855|consen 310 QNWRMGLKV 318 (484)
T ss_pred hhhhhcchh
Confidence 443333333
No 158
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.93 E-value=7.5e-06 Score=68.76 Aligned_cols=80 Identities=24% Similarity=0.426 Sum_probs=69.8
Q ss_pred CCCCCeEE-EcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEE
Q 022301 3 SRASRTLY-VGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (299)
Q Consensus 3 ~~~~~~l~-V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 78 (299)
..++-++| |+||+.+++.++|+.+|..+|.|..+.+.. ++..+|||||.|.+...+..|+.. +...+.+.++.|.
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccc
Confidence 35566677 999999999999999999999999999943 467889999999999999999996 8889999999998
Q ss_pred EccCC
Q 022301 79 LAHGG 83 (299)
Q Consensus 79 ~~~~~ 83 (299)
+....
T Consensus 260 ~~~~~ 264 (285)
T KOG4210|consen 260 EDEPR 264 (285)
T ss_pred cCCCC
Confidence 87543
No 159
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.93 E-value=3.3e-05 Score=53.88 Aligned_cols=75 Identities=17% Similarity=0.261 Sum_probs=54.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEe-e---------cCCCCCceEEEEecChHHHHHHHHhcCCCCCCCc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL-K---------IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~-~---------~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~ 73 (299)
...+.|.|-+.|+. ....|.++|++||+|.+..- . ......+...|+|.++.+|.+||. .||..|.|.
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 35677889999999 55788899999999988751 0 011335689999999999999999 899999886
Q ss_pred eE-EEEEc
Q 022301 74 RL-RVELA 80 (299)
Q Consensus 74 ~i-~v~~~ 80 (299)
.| -|.++
T Consensus 82 ~mvGV~~~ 89 (100)
T PF05172_consen 82 LMVGVKPC 89 (100)
T ss_dssp EEEEEEE-
T ss_pred EEEEEEEc
Confidence 55 46665
No 160
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.92 E-value=1.6e-05 Score=64.53 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=63.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCceee
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (299)
......++|+|+...++.++++.+|+.||.|..+.+..+... +|+||+|.+.+.++.|+. |+|..|.|..+.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIE 173 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccce
Confidence 345579999999999999999999999999988888777544 499999999999999999 999999998543
No 161
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.85 E-value=1e-05 Score=64.60 Aligned_cols=70 Identities=17% Similarity=0.315 Sum_probs=59.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCC-----------CCCc----eEEEEecChHHHHHHHHhcCCCC
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP-----------RPPG----YAFVEFEEARDAEDAIRGRDGYD 69 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~-----------~~~g----~afV~F~~~e~A~~A~~~l~~~~ 69 (299)
.+-+|||.|||+.+....|.++|..||.|-.|.|.... ...+ -|.|+|.....|..+...|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 45689999999999999999999999999999995431 2221 26799999999999999999999
Q ss_pred CCCce
Q 022301 70 FDGHR 74 (299)
Q Consensus 70 ~~g~~ 74 (299)
|.|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 162
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=8.6e-05 Score=65.25 Aligned_cols=61 Identities=23% Similarity=0.412 Sum_probs=56.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhh-hcCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHh
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFY-KYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRG 64 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~i~~~~~---~~~~g~afV~F~~~e~A~~A~~~ 64 (299)
++.+|||||+||--++.++|..+|. -||.|..+-|..+ +-++|-|=|.|.+..+-.+||..
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 6889999999999999999999999 8999999999766 35789999999999999999983
No 163
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=5.1e-05 Score=67.19 Aligned_cols=74 Identities=28% Similarity=0.423 Sum_probs=58.9
Q ss_pred CCeEEEcCCCCCCC--HH----HHHHHhhhcCCeeEEEeecC--CCCCceEEEEecChHHHHHHHHhcCCCCCC-CceEE
Q 022301 6 SRTLYVGNLPGDIR--ER----EVEDLFYKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLR 76 (299)
Q Consensus 6 ~~~l~V~nLp~~~t--~~----~l~~~F~~~G~v~~i~~~~~--~~~~g~afV~F~~~e~A~~A~~~l~~~~~~-g~~i~ 76 (299)
...|+|.|+|.--. .+ -|..+|+++|+|..+.++.+ +..+||+|++|.+..+|+.|++.|||..|+ ...+.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 45788999987422 22 36679999999999999654 568999999999999999999999998876 44556
Q ss_pred EEE
Q 022301 77 VEL 79 (299)
Q Consensus 77 v~~ 79 (299)
|..
T Consensus 138 v~~ 140 (698)
T KOG2314|consen 138 VRL 140 (698)
T ss_pred eeh
Confidence 654
No 164
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.75 E-value=8.9e-05 Score=45.44 Aligned_cols=52 Identities=17% Similarity=0.310 Sum_probs=41.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHH
Q 022301 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAI 163 (299)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~ 163 (299)
..|.|.+.+.... +++..+|..||+|..+.+... ..+.+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~--~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES--TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC--CcEEEEEECCHHHHHhhC
Confidence 4677888887655 445558999999999888733 339999999999999985
No 165
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.71 E-value=0.00011 Score=58.82 Aligned_cols=93 Identities=27% Similarity=0.287 Sum_probs=77.6
Q ss_pred HHHHHHHhcCCCCCCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCee
Q 022301 57 DAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVC 136 (299)
Q Consensus 57 ~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~ 136 (299)
-|..|...|++....|+.|.|.|+.. ..|+|.||...+..+.|.+.|..||+|.
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~--------------------------a~l~V~nl~~~~sndll~~~f~~fg~~e 59 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH--------------------------AELYVVNLMQGASNDLLEQAFRRFGPIE 59 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc--------------------------ceEEEEecchhhhhHHHHHhhhhcCccc
Confidence 46667777999999999999999853 5899999999999999999999999998
Q ss_pred EEEEEeCC---CCCEEEEEecChhhHHHHHHhcCCCeecCce
Q 022301 137 FSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (299)
Q Consensus 137 ~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (299)
...+..|. .++-++|.|...-.|.+|+..+.-.-+.+..
T Consensus 60 ~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~ 101 (275)
T KOG0115|consen 60 RAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTT 101 (275)
T ss_pred hheeeecccccccccchhhhhcchhHHHHHHHhccCccccCC
Confidence 86666653 3358999999999999999988655555543
No 166
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.65 E-value=0.00011 Score=68.66 Aligned_cols=81 Identities=28% Similarity=0.436 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCC--ceEEEEEc
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVELA 80 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g--~~i~v~~~ 80 (299)
..+++.|||++|.+++....|...|..||.|..|.+. +...||||+|.+...|+.|++.|-|..|.| +.|.|.|+
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~---hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR---HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc---cCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 3578899999999999999999999999999999986 446699999999999999999999999975 56888888
Q ss_pred cCCCCC
Q 022301 81 HGGRGR 86 (299)
Q Consensus 81 ~~~~~~ 86 (299)
......
T Consensus 529 ~~~~~~ 534 (975)
T KOG0112|consen 529 SPPGAT 534 (975)
T ss_pred cCCCCC
Confidence 755443
No 167
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=97.64 E-value=0.00013 Score=64.84 Aligned_cols=12 Identities=67% Similarity=0.614 Sum_probs=4.6
Q ss_pred CCCCCCCCCCCC
Q 022301 218 SYSRSRSQSKSP 229 (299)
Q Consensus 218 srsr~rsrsr~~ 229 (299)
+++|++|++++.
T Consensus 607 skSRSRSpS~~~ 618 (757)
T KOG4368|consen 607 SKSRSRSPSRSN 618 (757)
T ss_pred ccccCCCccccc
Confidence 333333333333
No 168
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.63 E-value=0.00015 Score=59.14 Aligned_cols=77 Identities=25% Similarity=0.404 Sum_probs=57.6
Q ss_pred CCCeEEEcCC--CCCCC---HHHHHHHhhhcCCeeEEEeecCC----CCCceEEEEecChHHHHHHHHhcCCCCCCCceE
Q 022301 5 ASRTLYVGNL--PGDIR---EREVEDLFYKYGPIAHIDLKIPP----RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRL 75 (299)
Q Consensus 5 ~~~~l~V~nL--p~~~t---~~~l~~~F~~~G~v~~i~~~~~~----~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i 75 (299)
+++.|.+.|+ +-.++ ++++++..++||.|..|.|.... +-.--.||+|...++|.+|+-.|||.+|.|+.+
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v 359 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVV 359 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceee
Confidence 3444555555 33344 34688899999999999884321 223457999999999999999999999999999
Q ss_pred EEEEcc
Q 022301 76 RVELAH 81 (299)
Q Consensus 76 ~v~~~~ 81 (299)
...|.+
T Consensus 360 ~A~Fyn 365 (378)
T KOG1996|consen 360 SACFYN 365 (378)
T ss_pred eheecc
Confidence 887754
No 169
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.58 E-value=0.00021 Score=59.46 Aligned_cols=72 Identities=17% Similarity=0.243 Sum_probs=58.4
Q ss_pred CCccEEEEeCCCCCCCHHH------HHHHHHhcCCeeEEEEEeCCCC-----C--EEEEEecChhhHHHHHHhcCCCeec
Q 022301 106 RSEYRVLVTGLPSSASWQD------LKDHMRRAGDVCFSQVFRDGSG-----T--TGIVDYTNYDDMKHAIKKLDDSEFR 172 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~------l~~~f~~~G~v~~~~~~~~~~~-----~--~~fv~f~~~~~a~~a~~~l~g~~~~ 172 (299)
...+-+||.+|++.+..++ -.++|.+||+|..+.|.+.... + -.||.|...++|..||.+.+|..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 3556789999999886665 2479999999999888665421 1 3599999999999999999999999
Q ss_pred Cceee
Q 022301 173 NAFSR 177 (299)
Q Consensus 173 g~~~~ 177 (299)
|+.+.
T Consensus 192 Gr~lk 196 (480)
T COG5175 192 GRVLK 196 (480)
T ss_pred CceEe
Confidence 98664
No 170
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.58 E-value=0.00034 Score=48.85 Aligned_cols=67 Identities=21% Similarity=0.229 Sum_probs=48.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE-E----------EeCCCCCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ-V----------FRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 108 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~-~----------~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
..-|.|.+.|+. ....|.++|++||+|.... + .......+..|.|.+..+|++||. .||..+.|...
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 356889999887 5667888999999997764 1 112233499999999999999999 89999998754
No 171
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.53 E-value=0.00056 Score=45.24 Aligned_cols=56 Identities=16% Similarity=0.275 Sum_probs=44.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCC
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG 67 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~ 67 (299)
....+|+ +|......||.+||+.||.|.--.|. -.-|||...+.+.|..|+..+.-
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~-----dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN-----DTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEEC-----TTEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc-----CCcEEEEeecHHHHHHHHHHhcc
Confidence 3566776 99999999999999999999877776 34899999999999999997753
No 172
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.51 E-value=0.00048 Score=51.06 Aligned_cols=55 Identities=24% Similarity=0.463 Sum_probs=46.1
Q ss_pred HHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 22 EVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 22 ~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
+|.+.|..||+|.-+++. -+.-.|+|.+-+.|.+|+. |+|..+.|..|+|....+
T Consensus 52 ~ll~~~~~~GevvLvRfv-----~~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFV-----GDTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEE-----TTCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEe-----CCeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 577889999999988887 3467999999999999999 999999999999988643
No 173
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.39 E-value=0.00011 Score=58.97 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=60.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC---------C-------EEEEEecChhhHHHHHHhcCCCe
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---------T-------TGIVDYTNYDDMKHAIKKLDDSE 170 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~---------~-------~~fv~f~~~~~a~~a~~~l~g~~ 170 (299)
..-.||+.+||+.+...-|.++|..||.|-.|.+...... + -|+|+|.....|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3458999999999999999999999999999888765432 2 38999999999999999999999
Q ss_pred ecCce
Q 022301 171 FRNAF 175 (299)
Q Consensus 171 ~~g~~ 175 (299)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99974
No 174
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.39 E-value=0.0003 Score=65.48 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=68.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEe--ecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~--~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 83 (299)
...|+|.|+|+..|.++|+.+|..+|.+.++.+ ...|+++|.|||.|.++.+|..++..+++..+....+.|..+++.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCc
Confidence 457899999999999999999999999999887 456899999999999999999999988888888777777776553
No 175
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.34 E-value=0.00083 Score=54.97 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCCeeEEEEEeCCCCC-----EEEEEecChhhHHHHHHhcCCCeecCceeeEE
Q 022301 122 WQDLKDHMRRAGDVCFSQVFRDGSGT-----TGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (299)
Q Consensus 122 ~~~l~~~f~~~G~v~~~~~~~~~~~~-----~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (299)
+.++++.|.+||+|..|.|+..+... -.||+|+..++|.+|+-.|||..++|+.+.+.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~ 362 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSAC 362 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehe
Confidence 56788999999999999888876442 68999999999999999999999999976544
No 176
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=97.34 E-value=0.00033 Score=62.08 Aligned_cols=70 Identities=16% Similarity=0.241 Sum_probs=56.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhh--hcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCC--CCCCCceEEE
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFY--KYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG--YDFDGHRLRV 77 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~--~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~--~~~~g~~i~v 77 (299)
..-|.|+|.-||..+..|+|+.||. .|-++++|.+..+ - -=||+|++.+||+.|++.|.. +.|.|++|..
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N---~-nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN---D-NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec---C-ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4568899999999999999999998 5889999999532 2 349999999999999887665 5566766544
No 177
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.33 E-value=0.00037 Score=58.73 Aligned_cols=72 Identities=19% Similarity=0.261 Sum_probs=60.7
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeec
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVC--------FSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFR 172 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~--------~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~ 172 (299)
.....+|||-+||..++.++|.++|.++|.|. .|++..+..+ +-|.|.|+++..|+.|+.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45667999999999999999999999999773 3555555433 48999999999999999999999999
Q ss_pred Ccee
Q 022301 173 NAFS 176 (299)
Q Consensus 173 g~~~ 176 (299)
+..+
T Consensus 143 gn~i 146 (351)
T KOG1995|consen 143 GNTI 146 (351)
T ss_pred CCCc
Confidence 9643
No 178
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.33 E-value=8.4e-05 Score=63.75 Aligned_cols=69 Identities=13% Similarity=0.266 Sum_probs=57.8
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeC---CCC--------------CEEEEEecChhhHHHHHHh
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD---GSG--------------TTGIVDYTNYDDMKHAIKK 165 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~---~~~--------------~~~fv~f~~~~~a~~a~~~ 165 (299)
.+..+..+|.+.|||.+-.-+.|.++|..+|.|..|.|... +.. .+|+|+|+..+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34457789999999999999999999999999999998776 211 1799999999999999998
Q ss_pred cCCCee
Q 022301 166 LDDSEF 171 (299)
Q Consensus 166 l~g~~~ 171 (299)
|+....
T Consensus 306 ~~~e~~ 311 (484)
T KOG1855|consen 306 LNPEQN 311 (484)
T ss_pred hchhhh
Confidence 865443
No 179
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.00084 Score=59.78 Aligned_cols=68 Identities=24% Similarity=0.306 Sum_probs=56.1
Q ss_pred CccEEEEeCCCCCCC------HHHHHHHHHhcCCeeEEEEEeCCCC---CEEEEEecChhhHHHHHHhcCCCeecCc
Q 022301 107 SEYRVLVTGLPSSAS------WQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~------~~~l~~~f~~~G~v~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (299)
-...|+|.|+|---. ...|..+|+++|+|+.+.++.+..+ ||.|++|.+..+|+.|++.|||+.|+-+
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 346788888776322 4567789999999999999977665 4999999999999999999999999754
No 180
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.25 E-value=0.00084 Score=54.07 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=46.4
Q ss_pred HHHHHHHH-hcCCeeEEEEEeCC---CCCEEEEEecChhhHHHHHHhcCCCeecCceeeEEEE
Q 022301 123 QDLKDHMR-RAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (299)
Q Consensus 123 ~~l~~~f~-~~G~v~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~ 181 (299)
++|...|. +||+|..+.|-.+- -.|.+||.|...++|+.|++.||+..+.|+.+.+...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 45555555 79999888665543 2368999999999999999999999999997765543
No 181
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.24 E-value=0.0029 Score=46.33 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=57.3
Q ss_pred CCCCCeEEEcCCCCCCCH----HHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEE
Q 022301 3 SRASRTLYVGNLPGDIRE----REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~----~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 78 (299)
+-|-.||.|.=|..++.. ..|...++.||+|+.|.+. ++..|.|.|.+..+|.+|+.+++. ...|.-+++.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c----GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC----GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec----CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 345568888777666543 2366677899999999985 356899999999999999997766 6677888887
Q ss_pred Ecc
Q 022301 79 LAH 81 (299)
Q Consensus 79 ~~~ 81 (299)
|-.
T Consensus 158 Wqq 160 (166)
T PF15023_consen 158 WQQ 160 (166)
T ss_pred ccc
Confidence 754
No 182
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.98 E-value=0.00066 Score=59.14 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=64.9
Q ss_pred CCCCeEEEcCCCCCC-CHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 4 RASRTLYVGNLPGDI-REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~-t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
..++.|-+.-+|..+ |.++|...|.+||+|..|.+-.. .-.|.|+|.+..+|-.|.. .++..|.++.|+|.|-+.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc---hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 566777777777774 56789999999999999999644 3479999999999988888 899999999999999876
Q ss_pred CC
Q 022301 83 GR 84 (299)
Q Consensus 83 ~~ 84 (299)
..
T Consensus 446 s~ 447 (526)
T KOG2135|consen 446 SP 447 (526)
T ss_pred Cc
Confidence 43
No 183
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.97 E-value=0.0035 Score=41.55 Aligned_cols=54 Identities=19% Similarity=0.220 Sum_probs=41.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcC
Q 022301 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 167 (299)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 167 (299)
...+|+ .|..+...||.++|..||.|.-..|... .|||.....+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~dT----SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWINDT----SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEECTT----EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcCC----cEEEEeecHHHHHHHHHHhc
Confidence 445555 9999999999999999999875554333 89999999999999998775
No 184
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.96 E-value=0.0077 Score=42.91 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=47.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcC-CeeEEEeecCCC-CCceEEEEecChHHHHHHHHhcCCCCCC
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPPR-PPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~i~~~~~~~-~~g~afV~F~~~e~A~~A~~~l~~~~~~ 71 (299)
+..+.+...|..++.++|..+...+- .|..++|..++. ++-.++|+|.+.++|......+||+.|.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34444444455566666766666554 577888877765 4557889999999999999999998875
No 185
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.95 E-value=0.0093 Score=37.47 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=45.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhc
Q 022301 108 EYRVLVTGLPSSASWQDLKDHMRRA---GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 166 (299)
Q Consensus 108 ~~~l~v~nl~~~~~~~~l~~~f~~~---G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l 166 (299)
...|+|.|+. +++.++|+.+|..| .....+.++.|. .|-|.|.+.+.|..|+.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 3589999985 47889999999999 245567777775 6889999999999999865
No 186
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.94 E-value=0.0066 Score=45.10 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCceeeEEE
Q 022301 123 QDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (299)
Q Consensus 123 ~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~ 180 (299)
.+|.+.|..||.+.-+.+..+ .-+|+|.+-+.|.+|+. ++|.+++|+.+....
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaals-~dg~~v~g~~l~i~L 103 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRL 103 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE
T ss_pred HHHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHHc-cCCcEECCEEEEEEe
Confidence 477888999999998887765 67999999999999998 999999999654443
No 187
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.91 E-value=0.0055 Score=54.70 Aligned_cols=91 Identities=12% Similarity=0.167 Sum_probs=68.3
Q ss_pred HHHHHHHhcCCCCCCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHh--cCC
Q 022301 57 DAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRR--AGD 134 (299)
Q Consensus 57 ~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~--~G~ 134 (299)
-..++|...-+..++.+-++|... ..-+.|++..||..+..++++.+|+. +-+
T Consensus 149 LI~Evlresp~VqvDekgekVrp~-------------------------~kRcIvilREIpettp~e~Vk~lf~~encPk 203 (684)
T KOG2591|consen 149 LIVEVLRESPNVQVDEKGEKVRPN-------------------------HKRCIVILREIPETTPIEVVKALFKGENCPK 203 (684)
T ss_pred HHHHHHhcCCCceeccCccccccC-------------------------cceeEEEEeecCCCChHHHHHHHhccCCCCC
Confidence 334556656666666666666332 33467888999999999999999987 778
Q ss_pred eeEEEEEeCCCCCEEEEEecChhhHHHHHHhc-------CCCeecCce
Q 022301 135 VCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL-------DDSEFRNAF 175 (299)
Q Consensus 135 v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l-------~g~~~~g~~ 175 (299)
++.|.+..+. ..||+|++..||++|.+.| .|+.|.-++
T Consensus 204 ~iscefa~N~---nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 204 VISCEFAHND---NWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred ceeeeeeecC---ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 9999988776 5899999999999998664 566555443
No 188
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.89 E-value=0.0085 Score=37.65 Aligned_cols=54 Identities=17% Similarity=0.349 Sum_probs=41.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhc----CCeeEEEeecCCCCCceEEEEecChHHHHHHHHhc
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKY----GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l 65 (299)
...|+|.+|. +++.++|+.+|..| ++. .|....+ .-|-|.|.+.+.|..||..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~-~IEWIdD----tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF-RIEWIDD----TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCc-eEEEecC----CcEEEEECCHHHHHHHHHcC
Confidence 4679999984 58889999999998 543 4444322 26899999999999999864
No 189
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.86 E-value=0.0089 Score=39.45 Aligned_cols=66 Identities=27% Similarity=0.496 Sum_probs=41.1
Q ss_pred eEEEcCCC--CCCCHHHHHHHhhhcC-----CeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 8 TLYVGNLP--GDIREREVEDLFYKYG-----PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 8 ~l~V~nLp--~~~t~~~l~~~F~~~G-----~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
+||| |+- ..++..+|..++...+ .|-.|.|. ..|+||+.... .|..++..|++..+.|+.|.|+.|
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-----~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF-----DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe-----eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 5666 553 3589999999998775 45677776 45999999765 888899999999999999999864
No 190
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.80 E-value=0.001 Score=51.94 Aligned_cols=80 Identities=19% Similarity=0.169 Sum_probs=51.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhh-cCCe---eEEEeecC-----CCCCceEEEEecChHHHHHHHHhcCCCCCCC--
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYK-YGPI---AHIDLKIP-----PRPPGYAFVEFEEARDAEDAIRGRDGYDFDG-- 72 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v---~~i~~~~~-----~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g-- 72 (299)
.....|.|.+||+++|++++.+.+.. ++.. ..+..... .....-|||.|.+.+++......++|..|.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 55679999999999999999997776 6655 33332111 1223579999999999999999999966532
Q ss_pred ---ceEEEEEccCC
Q 022301 73 ---HRLRVELAHGG 83 (299)
Q Consensus 73 ---~~i~v~~~~~~ 83 (299)
....|++|...
T Consensus 85 g~~~~~~VE~Apyq 98 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQ 98 (176)
T ss_dssp S-EEEEEEEE-SS-
T ss_pred CCCcceeEEEcchh
Confidence 24567776543
No 191
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=96.73 E-value=0.0005 Score=60.52 Aligned_cols=7 Identities=14% Similarity=0.387 Sum_probs=2.8
Q ss_pred cChhhHH
Q 022301 154 TNYDDMK 160 (299)
Q Consensus 154 ~~~~~a~ 160 (299)
.+.++|.
T Consensus 235 kdkeea~ 241 (653)
T KOG2548|consen 235 KDKEEAK 241 (653)
T ss_pred hhHHHHH
Confidence 3344443
No 192
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.68 E-value=0.0021 Score=51.81 Aligned_cols=73 Identities=30% Similarity=0.425 Sum_probs=58.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCCCCC----CceEEEEE
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD----GHRLRVEL 79 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~----g~~i~v~~ 79 (299)
..|||.||+.-+..+.|.+.|..||+|..-.+.. .++..+-++|.|...-.|.+|+..+....|. +.+.-|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 6799999999999999999999999997666543 4677889999999999999999987544333 44444444
No 193
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.57 E-value=0.013 Score=51.07 Aligned_cols=67 Identities=16% Similarity=0.288 Sum_probs=58.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcC-CeeEEEeecCCCCC-ceEEEEecChHHHHHHHHhcCCCCCC
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPPRPP-GYAFVEFEEARDAEDAIRGRDGYDFD 71 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~i~~~~~~~~~-g~afV~F~~~e~A~~A~~~l~~~~~~ 71 (299)
+++.|.|-.+|..+|.-||..|...+- .|.+|.+..++.+. =.++|.|.+.++|......+||+.|.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 378999999999999999999888654 68999998777554 46889999999999999999999886
No 194
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.35 E-value=0.014 Score=45.79 Aligned_cols=62 Identities=29% Similarity=0.382 Sum_probs=46.6
Q ss_pred CHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcC--CCCCCCceEEEEEccCC
Q 022301 19 REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRLRVELAHGG 83 (299)
Q Consensus 19 t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~--~~~~~g~~i~v~~~~~~ 83 (299)
..+.|.++|..|+.+..+.+. .+-+-..|.|.+.++|..|...|+ +..+.|..++|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L---~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL---KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE---TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEc---CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 457899999999998888876 334578999999999999999999 89999999999998543
No 195
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.31 E-value=0.0024 Score=58.09 Aligned_cols=70 Identities=19% Similarity=0.248 Sum_probs=63.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
+.-+|||+||...+..+-++.++..||-|..+... + |||..|.....+..|+..|+...+.|..+.++.-
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~-----~-fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD-----K-FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh-----h-hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 56789999999999999999999999999888775 2 9999999999999999999999999998888764
No 196
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=96.27 E-value=0.15 Score=42.28 Aligned_cols=161 Identities=11% Similarity=0.130 Sum_probs=96.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCC----------CCCceEEEEecChHHHHHHHHh----cCC--CC
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP----------RPPGYAFVEFEEARDAEDAIRG----RDG--YD 69 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~----------~~~g~afV~F~~~e~A~~A~~~----l~~--~~ 69 (299)
++.|.+.||..+++--.+...|-+||+|+.|.+.... .....+.+-|-+.+.|...... |.. +.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 6778899999999999999999999999999995433 3346789999999998765432 332 44
Q ss_pred CCCceEEEEEccCCCCCCCC-CCCCCCC-----CCCC-CCCCCCCccEEEEeCCCCCC-CHHHHHHHHHh---cCC----
Q 022301 70 FDGHRLRVELAHGGRGRSSS-DRHSSHS-----SGRG-RGVSRRSEYRVLVTGLPSSA-SWQDLKDHMRR---AGD---- 134 (299)
Q Consensus 70 ~~g~~i~v~~~~~~~~~~~~-~~~~~~~-----~~~~-~~~~~~~~~~l~v~nl~~~~-~~~~l~~~f~~---~G~---- 134 (299)
+.-..|.|.|..-....... .....+- .... .-........|.|.= ...+ .++-+.+.+.. -+.
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF-~~~~~~~dl~~~kL~fL~~~~n~RYV 173 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEF-KDPVDKDDLIEKKLPFLKNSNNKRYV 173 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEe-cCccchhHHHHHhhhhhccCCCceEE
Confidence 66777888776532211111 0000000 0111 111222333444432 2333 33333333322 232
Q ss_pred eeEEEEEeCCC------CCEEEEEecChhhHHHHHHhcC
Q 022301 135 VCFSQVFRDGS------GTTGIVDYTNYDDMKHAIKKLD 167 (299)
Q Consensus 135 v~~~~~~~~~~------~~~~fv~f~~~~~a~~a~~~l~ 167 (299)
++.+.++.... ..||.+.|-+..-|.+.++.|.
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 34566654432 2399999999999999998876
No 197
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=96.25 E-value=0.022 Score=36.42 Aligned_cols=55 Identities=22% Similarity=0.456 Sum_probs=44.1
Q ss_pred CCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEE
Q 022301 17 DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (299)
Q Consensus 17 ~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v 77 (299)
.++-++|+..+..|+ ...|... ..|| ||.|.+.++|..++...+|..+.+-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~~d----~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIRDD----RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEEec----CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 478899999999996 3444443 2566 99999999999999999999888776654
No 198
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.15 E-value=0.0022 Score=53.77 Aligned_cols=75 Identities=31% Similarity=0.511 Sum_probs=58.9
Q ss_pred CeEEEcCCCCCCCHHHHH---HHhhhcCCeeEEEeecCC------CCCceEEEEecChHHHHHHHHhcCCCCCCCceEEE
Q 022301 7 RTLYVGNLPGDIREREVE---DLFYKYGPIAHIDLKIPP------RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~---~~F~~~G~v~~i~~~~~~------~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v 77 (299)
+-+||-+|+..+..+.+. +.|.+||.|..|.+..+. ....-+||+|...++|..||...+|..++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 557888898887666554 589999999999995532 11234899999999999999999999999998776
Q ss_pred EEcc
Q 022301 78 ELAH 81 (299)
Q Consensus 78 ~~~~ 81 (299)
.+..
T Consensus 158 ~~gt 161 (327)
T KOG2068|consen 158 SLGT 161 (327)
T ss_pred hhCC
Confidence 5543
No 199
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.91 E-value=0.0051 Score=55.32 Aligned_cols=67 Identities=13% Similarity=0.191 Sum_probs=54.4
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeec
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~ 172 (299)
.....+.|+|.||--.+|.-+|++++...| .|..++|-.-+ .-|||.|.+.++|.....+|||..|-
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIK--ShCyV~yss~eEA~atr~AlhnV~WP 507 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIK--SHCYVSYSSVEEAAATREALHNVQWP 507 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhh--cceeEecccHHHHHHHHHHHhccccC
Confidence 445678999999999999999999999654 55555332222 37999999999999999999999874
No 200
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.89 E-value=0.034 Score=46.04 Aligned_cols=71 Identities=17% Similarity=0.253 Sum_probs=54.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCce-EEEEEcc
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR-LRVELAH 81 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~-i~v~~~~ 81 (299)
...|.|-++|+... .-|..+|.+||+|+..... ..-.+-+|.|.+..+|.+||. .||+.|+|.. |-|..+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~---~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP---SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC---CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 45677778877644 4577899999999887765 224588999999999999999 8999998764 4565544
No 201
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.79 E-value=0.035 Score=46.00 Aligned_cols=64 Identities=16% Similarity=0.215 Sum_probs=51.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCce
Q 022301 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (299)
Q Consensus 108 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (299)
..=+.|.++|+.. -..|..+|.+||.|+..... .++.+-+|.|.+..+|++||. .||+.|+|..
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 3446677777654 35677899999999887665 455599999999999999999 8899999874
No 202
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.72 E-value=0.011 Score=49.79 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=58.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCce
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (299)
..+++||+||-+-+|++||.+.+...| .+..++++.+... |||+|...+....++.++.|-.+.|.|..
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 457899999999999999999999887 5566666666433 59999999999999999999999999864
No 203
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.69 E-value=0.16 Score=36.29 Aligned_cols=65 Identities=11% Similarity=0.137 Sum_probs=49.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEeCCCCC--EEEEEecChhhHHHHHHhcCCCeecC
Q 022301 109 YRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSGT--TGIVDYTNYDDMKHAIKKLDDSEFRN 173 (299)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~~~~~~~~~--~~fv~f~~~~~a~~a~~~l~g~~~~g 173 (299)
..+.+...|+.++.++|..+...+- .|..+.|+.+.... .+.+.|.+.++|..-...+||+.++.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444455555566677776666654 56678888886554 78899999999999999999999875
No 204
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.49 E-value=0.01 Score=55.59 Aligned_cols=73 Identities=21% Similarity=0.196 Sum_probs=59.2
Q ss_pred EEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCC--CCceEEEEEccCCC
Q 022301 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF--DGHRLRVELAHGGR 84 (299)
Q Consensus 9 l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~--~g~~i~v~~~~~~~ 84 (299)
.++.|.+-+.+---|..+|..||.|.+.+... .-.+|.|+|...+.|..|+..|+|+.+ -|-+.+|.+++.-.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr---~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLR---DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecc---cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 34445555677788999999999999999863 246899999999999999999999776 48888998886443
No 205
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.38 E-value=0.038 Score=43.18 Aligned_cols=79 Identities=15% Similarity=0.247 Sum_probs=50.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHh-cCCe---eEEEEEeCCCC------CEEEEEecChhhHHHHHHhcCCCeecCce-
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRR-AGDV---CFSQVFRDGSG------TTGIVDYTNYDDMKHAIKKLDDSEFRNAF- 175 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v---~~~~~~~~~~~------~~~fv~f~~~~~a~~a~~~l~g~~~~g~~- 175 (299)
....|.|.+||+.+|++++.+.+.. ++.. ..+........ .-|||.|.+.+++..-...++|..+.+..
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3468999999999999999997776 6655 23321122111 16999999999999999999998876543
Q ss_pred --eeEEEEeccc
Q 022301 176 --SRAYVRVREY 185 (299)
Q Consensus 176 --~~~~~~~~~~ 185 (299)
..+.+....+
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 3344444444
No 206
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=95.08 E-value=0.031 Score=37.91 Aligned_cols=72 Identities=24% Similarity=0.359 Sum_probs=45.8
Q ss_pred EEEEecChHHHHHHHHhcCC--CCCCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHH
Q 022301 48 AFVEFEEARDAEDAIRGRDG--YDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDL 125 (299)
Q Consensus 48 afV~F~~~e~A~~A~~~l~~--~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l 125 (299)
|+|+|.+++-|+..+. +.. ..+.+..+.|............- .-.......+|.|.|||..+.+++|
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k~----------qv~~~vs~rtVlvsgip~~l~ee~l 69 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQKF----------QVFSGVSKRTVLVSGIPDVLDEEEL 69 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceEE----------EEEEcccCCEEEEeCCCCCCChhhh
Confidence 7899999999999888 333 34556666665442211100000 0022345678999999999999988
Q ss_pred HHHHH
Q 022301 126 KDHMR 130 (299)
Q Consensus 126 ~~~f~ 130 (299)
++.+.
T Consensus 70 ~D~Le 74 (88)
T PF07292_consen 70 RDKLE 74 (88)
T ss_pred eeeEE
Confidence 77543
No 207
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.93 E-value=0.00097 Score=57.33 Aligned_cols=78 Identities=17% Similarity=0.331 Sum_probs=65.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 83 (299)
++.|.|.|||+...++-|..|+..||.|+.|....+.......-|+|.+.+.+..|++.|+|..|....++|.|-...
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDE 157 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchh
Confidence 567899999999999999999999999999988443322334557899999999999999999999999999886533
No 208
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.80 E-value=0.15 Score=44.70 Aligned_cols=66 Identities=12% Similarity=0.232 Sum_probs=58.6
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEeCCCCC--EEEEEecChhhHHHHHHhcCCCeecC
Q 022301 108 EYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSGT--TGIVDYTNYDDMKHAIKKLDDSEFRN 173 (299)
Q Consensus 108 ~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~~~~~~~~~--~~fv~f~~~~~a~~a~~~l~g~~~~g 173 (299)
++.|+|-.+|..++-.||..++..+- .|..+.++++.... ++.|.|.+.++|..-.+.+||..++.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 68999999999999999999998865 67789998876544 78999999999999999999999886
No 209
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=94.58 E-value=0.022 Score=47.72 Aligned_cols=12 Identities=0% Similarity=0.221 Sum_probs=5.6
Q ss_pred HHHHHHHHHhcC
Q 022301 122 WQDLKDHMRRAG 133 (299)
Q Consensus 122 ~~~l~~~f~~~G 133 (299)
+.+|.+-|+++-
T Consensus 226 qkqId~~ie~r~ 237 (453)
T KOG2888|consen 226 QKQIDEKIEERK 237 (453)
T ss_pred HHHHHHHHHhcc
Confidence 344555555443
No 210
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=94.38 E-value=0.05 Score=41.41 Aligned_cols=113 Identities=17% Similarity=0.117 Sum_probs=73.5
Q ss_pred CCCHHHHHHHhhhc-CCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCCCCCCCCCCCCCC
Q 022301 17 DIREREVEDLFYKY-GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSH 95 (299)
Q Consensus 17 ~~t~~~l~~~F~~~-G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~ 95 (299)
.++...|.+.+... +....+.+.. ...++..++|.+++++..++. ...-.+.|..+.+....+.......
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~--l~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~------ 98 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRD--LGDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEV------ 98 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEE--eCCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccccccc------
Confidence 46667777666542 3333444422 125799999999999999998 5556677777777665432211110
Q ss_pred CCCCCCCCCCCCccEEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEEeCCC
Q 022301 96 SSGRGRGVSRRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGS 145 (299)
Q Consensus 96 ~~~~~~~~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~~~~~~~~~ 145 (299)
.......=|.|.|||.. .+++.|..+...+|++..++......
T Consensus 99 -------~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~~ 142 (153)
T PF14111_consen 99 -------KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLKR 142 (153)
T ss_pred -------ceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCCc
Confidence 01112234677899998 68899999999999999888765543
No 211
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=93.74 E-value=0.13 Score=43.24 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=10.3
Q ss_pred ceEEEEecChHHHHHHHH
Q 022301 46 GYAFVEFEEARDAEDAIR 63 (299)
Q Consensus 46 g~afV~F~~~e~A~~A~~ 63 (299)
.-.||-|.-+.-|..++.
T Consensus 174 T~v~vry~pe~iACaciy 191 (367)
T KOG0835|consen 174 TDVFVRYSPESIACACIY 191 (367)
T ss_pred cceeeecCHHHHHHHHHH
Confidence 345666665555555554
No 212
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=93.60 E-value=0.57 Score=36.12 Aligned_cols=77 Identities=19% Similarity=0.276 Sum_probs=56.6
Q ss_pred CCeEEEcCCCCCCC--HH---HHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCc-eEEEEE
Q 022301 6 SRTLYVGNLPGDIR--ER---EVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-RLRVEL 79 (299)
Q Consensus 6 ~~~l~V~nLp~~~t--~~---~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~-~i~v~~ 79 (299)
.++|++.+|+..+- .+ ....+|.+|.+..-..+. .+.+..-|.|.+++.|..|...+++..|.|+ .+++.+
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l---rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yf 86 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL---RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYF 86 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH---HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEE
Confidence 35677888877632 22 345677777666555554 3456788999999999999999999999988 888888
Q ss_pred ccCCCC
Q 022301 80 AHGGRG 85 (299)
Q Consensus 80 ~~~~~~ 85 (299)
+.....
T Consensus 87 aQ~~~~ 92 (193)
T KOG4019|consen 87 AQPGHP 92 (193)
T ss_pred ccCCCc
Confidence 765543
No 213
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.52 E-value=0.04 Score=46.51 Aligned_cols=69 Identities=17% Similarity=0.169 Sum_probs=54.4
Q ss_pred ccEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEEeCCC--C---C--EEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 108 EYRVLVTGLPSSASWQDLK---DHMRRAGDVCFSQVFRDGS--G---T--TGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 108 ~~~l~v~nl~~~~~~~~l~---~~f~~~G~v~~~~~~~~~~--~---~--~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
..-+||.+|+..+..+.+. +.|.+||.|..+.+..+.. . + -++|+|+..++|..||...+|..++|+.+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 3567788888776544443 4889999999998888662 1 1 68999999999999999999999999763
No 214
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.48 E-value=0.3 Score=36.09 Aligned_cols=62 Identities=8% Similarity=0.135 Sum_probs=45.4
Q ss_pred CCCccEEEEeCCCCCC----CHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCC
Q 022301 105 RRSEYRVLVTGLPSSA----SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS 169 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~----~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~ 169 (299)
.++..+|.|.=|..++ +...+.+.+..||+|..|...-.. .|.|.|.+...|-.|+.+++..
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq---savVvF~d~~SAC~Av~Af~s~ 148 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ---SAVVVFKDITSACKAVSAFQSR 148 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc---eEEEEehhhHHHHHHHHhhcCC
Confidence 3455678886655554 334455566779999988765332 7999999999999999998864
No 215
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.46 E-value=0.097 Score=48.09 Aligned_cols=68 Identities=13% Similarity=0.033 Sum_probs=60.0
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
+.++..++||+|+.+.+.++-++.+...+|-|..+.... |||+.|..+.-+..|+..++-..++|..+
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl 103 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQKL 103 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcchh
Confidence 445678999999999999999999999999998776654 99999999999999999999988888754
No 216
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.46 E-value=0.46 Score=43.20 Aligned_cols=78 Identities=22% Similarity=0.383 Sum_probs=61.6
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhhc----CCeeEEEeecC-------------CC---------------------
Q 022301 3 SRASRTLYVGNLPGD-IREREVEDLFYKY----GPIAHIDLKIP-------------PR--------------------- 43 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~v~~i~~~~~-------------~~--------------------- 43 (299)
...++.|-|-||.+. |..++|..+|..| |.|..|.|.+. |.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 467899999999997 9999999999866 57889988331 11
Q ss_pred ----------------CCceEEEEecChHHHHHHHHhcCCCCCCC--ceEEEEEc
Q 022301 44 ----------------PPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVELA 80 (299)
Q Consensus 44 ----------------~~g~afV~F~~~e~A~~A~~~l~~~~~~g--~~i~v~~~ 80 (299)
.--||.|+|.+.+.|......++|..|.. ..|-+.|.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 01389999999999999999999999974 45555554
No 217
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=93.04 E-value=0.31 Score=41.13 Aligned_cols=10 Identities=0% Similarity=0.192 Sum_probs=4.5
Q ss_pred CCHHHHHHHH
Q 022301 120 ASWQDLKDHM 129 (299)
Q Consensus 120 ~~~~~l~~~f 129 (299)
+++++|.+++
T Consensus 213 ~~k~eid~ic 222 (367)
T KOG0835|consen 213 TTKREIDEIC 222 (367)
T ss_pred CcHHHHHHHH
Confidence 3444444443
No 218
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=92.80 E-value=0.072 Score=44.72 Aligned_cols=11 Identities=27% Similarity=0.033 Sum_probs=4.6
Q ss_pred HHHHHHHHHhc
Q 022301 122 WQDLKDHMRRA 132 (299)
Q Consensus 122 ~~~l~~~f~~~ 132 (299)
..+|...|..|
T Consensus 171 p~dLw~WyEpy 181 (453)
T KOG2888|consen 171 PADLWDWYEPY 181 (453)
T ss_pred hhHHHHHhhhh
Confidence 34444444443
No 219
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.77 E-value=0.63 Score=36.59 Aligned_cols=58 Identities=12% Similarity=0.112 Sum_probs=44.1
Q ss_pred CHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcC--CCeecCceeeEEE
Q 022301 121 SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD--DSEFRNAFSRAYV 180 (299)
Q Consensus 121 ~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~--g~~~~g~~~~~~~ 180 (299)
..+.|.++|..|+.+..+.++..-. -..|.|.+.+.|..|...|+ +..+.|..+..+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr--Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf 67 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR--RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYF 67 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT--EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE-
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC--EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEE
Confidence 4688999999999988877766533 57899999999999999999 9999998655443
No 220
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=90.90 E-value=0.18 Score=44.57 Aligned_cols=65 Identities=17% Similarity=0.226 Sum_probs=50.6
Q ss_pred EEEEeCCCCCC-CHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCceee
Q 022301 110 RVLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (299)
Q Consensus 110 ~l~v~nl~~~~-~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (299)
.|.+.-.|..+ +.++|..+|.+||+|..|++-.... -|.|+|.+..+|-.|.. .++..|+++.+.
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~--~a~vTF~t~aeag~a~~-s~~avlnnr~iK 439 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL--HAVVTFKTRAEAGEAYA-SHGAVLNNRFIK 439 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCchh--hheeeeeccccccchhc-cccceecCceeE
Confidence 34444445553 6799999999999999998876633 68999999999977765 889999998543
No 221
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=88.10 E-value=0.38 Score=34.71 Aligned_cols=56 Identities=23% Similarity=0.408 Sum_probs=30.3
Q ss_pred eEEEcCCCCC---------CCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHH-HHHHH
Q 022301 8 TLYVGNLPGD---------IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDA-EDAIR 63 (299)
Q Consensus 8 ~l~V~nLp~~---------~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A-~~A~~ 63 (299)
++.|-|++.. ++.++|.+.|..|.++.-..+.......|+++|+|...-.. ..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 4566688553 46678999999999887555543445678999999865443 34544
No 222
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=87.81 E-value=0.27 Score=46.62 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=48.0
Q ss_pred CCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeec
Q 022301 115 GLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (299)
Q Consensus 115 nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~ 172 (299)
|.+-..+-.-|..+|..||.|..++...+-+ .|.|+|...+.|..|++.|+|+++-
T Consensus 305 nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs 360 (1007)
T KOG4574|consen 305 NNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVS 360 (1007)
T ss_pred cccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCccc
Confidence 3344556778999999999999999877755 8999999999999999999999864
No 223
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.59 E-value=1.3 Score=38.44 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=45.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCe-eEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCC
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPI-AHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD 69 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v-~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~ 69 (299)
..+|-|.++|.....+||..+|+.|+.- -.|++. + -..||..|.....|..||. |...+
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWv-D---dthalaVFss~~~AaeaLt-~kh~~ 450 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWV-D---DTHALAVFSSVNRAAEALT-LKHDW 450 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEe-e---cceeEEeecchHHHHHHhh-ccCce
Confidence 4688999999999999999999999742 222222 1 2389999999999999999 54333
No 224
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.02 E-value=6.9 Score=35.99 Aligned_cols=72 Identities=14% Similarity=0.205 Sum_probs=57.9
Q ss_pred CCCccEEEEeCCCCC-CCHHHHHHHHHhc----CCeeEEEEEeCC-------------C-------------------C-
Q 022301 105 RRSEYRVLVTGLPSS-ASWQDLKDHMRRA----GDVCFSQVFRDG-------------S-------------------G- 146 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~----G~v~~~~~~~~~-------------~-------------------~- 146 (299)
......|.|.|+.++ +..++|.-+|..| |.|..|.|.... + .
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345678999999997 7899999988876 588888885431 1 0
Q ss_pred ----------------C--EEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 147 ----------------T--TGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 147 ----------------~--~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
+ ||.|+|.+.+.|......++|.++.....
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~ 298 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSAN 298 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccc
Confidence 1 79999999999999999999999987544
No 225
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=84.82 E-value=1.5 Score=36.30 Aligned_cols=48 Identities=23% Similarity=0.326 Sum_probs=36.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCe-eEEEeecCCCCCceEEEEecChH
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPI-AHIDLKIPPRPPGYAFVEFEEAR 56 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v-~~i~~~~~~~~~g~afV~F~~~e 56 (299)
.+-|+|+||+.++.-.||+..+...|-+ ..|.+. .+.|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk---g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK---GHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee---cCCcceeEecCCcc
Confidence 3559999999999999999999887643 333333 34678999998754
No 226
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=84.62 E-value=6.4 Score=25.71 Aligned_cols=56 Identities=9% Similarity=0.172 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHhcCC-----eeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCceee
Q 022301 117 PSSASWQDLKDHMRRAGD-----VCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (299)
Q Consensus 117 ~~~~~~~~l~~~f~~~G~-----v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (299)
-..++..+|..++...+. |-.+.+..+ |+||+-... .|..++..|++..+.|+.+.
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ 70 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN----FSFVEVPEE-VAEKVLEALNGKKIKGKKVR 70 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-TT--HHHHHHHHTT--SSS----
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEeee----EEEEEECHH-HHHHHHHHhcCCCCCCeeEE
Confidence 345788899998888754 445666655 888887654 78889999999999998543
No 227
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=84.40 E-value=0.55 Score=37.71 Aligned_cols=36 Identities=14% Similarity=0.253 Sum_probs=31.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEee
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK 39 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~ 39 (299)
....+||+-|||..+|++.|..+.+++|-++.+.+.
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~ 73 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYN 73 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheecc
Confidence 567899999999999999999999999977777664
No 228
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=83.55 E-value=5.9 Score=26.20 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=41.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhh-cC-CeeEEEeecCCCCCceEEEEecChHHHHHHHHhc
Q 022301 9 LYVGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (299)
Q Consensus 9 l~V~nLp~~~t~~~l~~~F~~-~G-~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l 65 (299)
-|+-.++..++..+|++.++. || +|..|.........--|||.+...+.|...-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 344578899999999998886 44 5666666444444568999999888887765433
No 229
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=83.52 E-value=1.2 Score=38.62 Aligned_cols=67 Identities=21% Similarity=0.325 Sum_probs=49.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCC-eeEEEeecC-----CCCCceEEEEecChHHHHHHHHhcCCCCC
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGP-IAHIDLKIP-----PRPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-v~~i~~~~~-----~~~~g~afV~F~~~e~A~~A~~~l~~~~~ 70 (299)
...+.|.|.+||+.+++++|.+-...|-. |....+... ..-.+.|||.|..+++.......++|..|
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 34578899999999999999988887653 333333211 12347899999999998888888887544
No 230
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=82.22 E-value=6.6 Score=26.49 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=41.5
Q ss_pred EEcCCCCCCCHHHHHHHhhh-cC-CeeEEEeecCCCCCceEEEEecChHHHHHHHHhc
Q 022301 10 YVGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (299)
Q Consensus 10 ~V~nLp~~~t~~~l~~~F~~-~G-~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l 65 (299)
|+-.++..++..+|++.++. || +|..|..........-|||.+...+.|......+
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 33367889999999999986 45 6677776544445568999999998888775533
No 231
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=81.43 E-value=0.2 Score=45.09 Aligned_cols=67 Identities=18% Similarity=0.212 Sum_probs=52.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCCCCC
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~~~~~~ 71 (299)
-+|+|||.||+++++-.+|..++..+--+..+.+... .....++.|.|.-.-....|+.+||+..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 3689999999999999999999998877777766221 233467889998777777777778886664
No 232
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=80.94 E-value=13 Score=25.00 Aligned_cols=56 Identities=16% Similarity=0.115 Sum_probs=42.5
Q ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEeCCCC-CEEEEEecChhhHHHHHHhc
Q 022301 111 VLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSG-TTGIVDYTNYDDMKHAIKKL 166 (299)
Q Consensus 111 l~v~nl~~~~~~~~l~~~f~~-~G-~v~~~~~~~~~~~-~~~fv~f~~~~~a~~a~~~l 166 (299)
-|+..++..++..+|++.++. || +|..|.....+.+ .-|||.+...+.|.+....+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 444556778899999999988 56 6777777666544 37999999999998876654
No 233
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=80.24 E-value=7.2 Score=27.72 Aligned_cols=112 Identities=22% Similarity=0.306 Sum_probs=58.4
Q ss_pred CCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCC--CCCCceEEEEEccCCCCCCCCC
Q 022301 13 NLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY--DFDGHRLRVELAHGGRGRSSSD 90 (299)
Q Consensus 13 nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~--~~~g~~i~v~~~~~~~~~~~~~ 90 (299)
-||+.++. |-++|+.=|+|.+|.... +|.+ ..|+-.++|. .++|. |.+--..... .-
T Consensus 10 VlPPYTnK--LSDYfeSPGKI~svItvt----------qypd----ndal~~~~G~lE~vDg~-i~IGs~q~~~----sV 68 (145)
T TIGR02542 10 VLPPYTNK--LSDYFESPGKIQSVITVT----------QYPD----NDALLYVHGTLEQVDGN-IRIGSGQTPA----SV 68 (145)
T ss_pred ecCCccch--hhHHhcCCCceEEEEEEe----------ccCC----chhhheeeeehhhccCc-EEEccCCCcc----cE
Confidence 37887664 889999999999886631 1221 1234445553 34444 4442211000 00
Q ss_pred CCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHh---cCCeeEEEEEeCC--CCC--EEEEEecChh
Q 022301 91 RHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRR---AGDVCFSQVFRDG--SGT--TGIVDYTNYD 157 (299)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~---~G~v~~~~~~~~~--~~~--~~fv~f~~~~ 157 (299)
.. ...+.++++. --|+.+|-.+|+++|.+ |..|..-++..+. .+. .||.-|....
T Consensus 69 ~i----------~gTPsgnnv~--F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~~ 130 (145)
T TIGR02542 69 RI----------QGTPSGNNVI--FPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNATQ 130 (145)
T ss_pred EE----------ecCCCCCcee--cCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccch
Confidence 00 0011112221 23777899999999987 4445444444442 222 6888886653
No 234
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=79.90 E-value=53 Score=30.77 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=27.0
Q ss_pred CCCCccEEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEEeCC
Q 022301 104 SRRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDG 144 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~~~~~~~~ 144 (299)
-+.....++|.+++.. ++-.-..+.+.++|++..|.|....
T Consensus 57 LQenDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRpr 98 (1027)
T KOG3580|consen 57 LQENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRPR 98 (1027)
T ss_pred cccCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEecccc
Confidence 3445567888887765 4555555677788888777665543
No 235
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=78.40 E-value=15 Score=23.51 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCc
Q 022301 119 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (299)
Q Consensus 119 ~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (299)
.++-++|+..+..|+-. .|..+.. --||.|.+..+|+.+....+|..+.+-
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~t--GfYIvF~~~~Ea~rC~~~~~~~~~f~y 61 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDRT--GFYIVFNDSKEAERCFRAEDGTLFFTY 61 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecCC--EEEEEECChHHHHHHHHhcCCCEEEEE
Confidence 46789999999998743 3334443 357999999999999999999988765
No 236
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=77.73 E-value=18 Score=23.99 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=42.5
Q ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEeCCCC-CEEEEEecChhhHHHHHHhc
Q 022301 110 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSG-TTGIVDYTNYDDMKHAIKKL 166 (299)
Q Consensus 110 ~l~v~nl~~~~~~~~l~~~f~~-~G-~v~~~~~~~~~~~-~~~fv~f~~~~~a~~a~~~l 166 (299)
.-|+..++..++..+|++.++. || +|..+....-+.. .-|||.+..-+.|.+.-.++
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 3555667888999999999988 56 6666766655543 27999999988888776554
No 237
>PF14893 PNMA: PNMA
Probab=77.43 E-value=3.1 Score=35.96 Aligned_cols=77 Identities=22% Similarity=0.226 Sum_probs=45.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhh----hcCCeeEEEe-ecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEE
Q 022301 2 SSRASRTLYVGNLPGDIREREVEDLFY----KYGPIAHIDL-KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (299)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~----~~G~v~~i~~-~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~ 76 (299)
.=++.+.|.|.+||.+|++++|.+.+. .+|...-+.- .....+..-|+|+|...-+ .++- -..+.-.|....
T Consensus 14 ~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n--~~~i-P~~i~g~gg~W~ 90 (331)
T PF14893_consen 14 GVDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVN--YSLI-PREIPGKGGPWR 90 (331)
T ss_pred CcChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccc--hhhC-chhcCCCCCceE
Confidence 336778899999999999999888765 4453322211 1112234588999985522 2221 111222366777
Q ss_pred EEEcc
Q 022301 77 VELAH 81 (299)
Q Consensus 77 v~~~~ 81 (299)
|.+-.
T Consensus 91 Vv~~p 95 (331)
T PF14893_consen 91 VVFKP 95 (331)
T ss_pred EEecC
Confidence 76643
No 238
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=77.07 E-value=3.5 Score=31.86 Aligned_cols=53 Identities=15% Similarity=0.079 Sum_probs=35.8
Q ss_pred CCHHHHHHHhhhc-CCeeEEEeec--CC--CCCceEEEEecChHHHHHHHHhcCCCCCC
Q 022301 18 IREREVEDLFYKY-GPIAHIDLKI--PP--RPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (299)
Q Consensus 18 ~t~~~l~~~F~~~-G~v~~i~~~~--~~--~~~g~afV~F~~~e~A~~A~~~l~~~~~~ 71 (299)
+|+++|.++..-- |.+..|.+.. ++ ..+|-.||+|.+.++|..++. -++..+.
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~-~~e~~~~ 175 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD-THEEKGA 175 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh-hhhhhcc
Confidence 4555555544422 6899998833 23 457899999999999998877 3443333
No 239
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=76.71 E-value=1.3 Score=36.56 Aligned_cols=67 Identities=13% Similarity=0.252 Sum_probs=44.3
Q ss_pred CCccEEEEeCCCCC------------CCHHHHHHHHHhcCCeeEEEEEeCCC---------C-----CE---------EE
Q 022301 106 RSEYRVLVTGLPSS------------ASWQDLKDHMRRAGDVCFSQVFRDGS---------G-----TT---------GI 150 (299)
Q Consensus 106 ~~~~~l~v~nl~~~------------~~~~~l~~~f~~~G~v~~~~~~~~~~---------~-----~~---------~f 150 (299)
....+|++.+||-. .++..|...|..||.|..|.|+...+ . || ||
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 33456777776542 35788999999999999988865421 1 12 44
Q ss_pred EEecChhhHHHHHHhcCCCeec
Q 022301 151 VDYTNYDDMKHAIKKLDDSEFR 172 (299)
Q Consensus 151 v~f~~~~~a~~a~~~l~g~~~~ 172 (299)
|+|-...-...|+..|.|..+.
T Consensus 227 vqfmeykgfa~amdalr~~k~a 248 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMKLA 248 (445)
T ss_pred HHHHHHHhHHHHHHHHhcchHH
Confidence 5555555566777777777654
No 240
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=75.02 E-value=21 Score=29.86 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=37.3
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecCh
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNY 156 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~ 156 (299)
..+-|+|+||+.++.-.||+..+.+.|-+- +.+.+....+-||+.|.+.
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCc-eeEeeecCCcceeEecCCc
Confidence 445799999999999999999999887543 2334444556899999763
No 241
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=74.99 E-value=16 Score=32.17 Aligned_cols=38 Identities=16% Similarity=0.399 Sum_probs=30.1
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhhc----CCeeEEEeec
Q 022301 3 SRASRTLYVGNLPGD-IREREVEDLFYKY----GPIAHIDLKI 40 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~v~~i~~~~ 40 (299)
.++++.|-|-||.++ +...+|..+|+.| |+|..|.|.+
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 467889999999986 8888999998865 4667777753
No 242
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.95 E-value=20 Score=31.48 Aligned_cols=55 Identities=9% Similarity=0.074 Sum_probs=46.1
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEEeCCCCCEEEEEecChhhHHHHHHh
Q 022301 108 EYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDGSGTTGIVDYTNYDDMKHAIKK 165 (299)
Q Consensus 108 ~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~ 165 (299)
...|-|.++|.....+||...|..|+. -..|.++.+. -||..|....-|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhhc
Confidence 467889999999999999999999974 4557776665 689999999999999874
No 243
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=72.08 E-value=12 Score=34.21 Aligned_cols=72 Identities=31% Similarity=0.505 Sum_probs=47.7
Q ss_pred EcCCCCCCCHHHHHHHhhh-cCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCCC
Q 022301 11 VGNLPGDIREREVEDLFYK-YGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (299)
Q Consensus 11 V~nLp~~~t~~~l~~~F~~-~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 84 (299)
+.++|..+-..++...+.. ++....- .... +...|+++.|.+++.+.+|+..++|..+.+..+.|.......
T Consensus 30 ~e~~~~~~~q~~~~k~~~~~~~~~~s~-tk~~-~~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~ 102 (534)
T KOG2187|consen 30 IEMIPTFIGQKQLNKVLLKILRDVKSK-TKLP-KMPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEV 102 (534)
T ss_pred eeccCchhhhhHHHhhhhhhccccccc-CCCC-CCCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccccc
Confidence 4456666666655544433 3222211 1111 234699999999999999999999999988888887765443
No 244
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=71.99 E-value=18 Score=23.42 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=23.5
Q ss_pred ceEEEEecChHHHHHHHHhcCCCCCCCce
Q 022301 46 GYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (299)
Q Consensus 46 g~afV~F~~~e~A~~A~~~l~~~~~~g~~ 74 (299)
.+++|.|.+..+|.+|-+.|....+..+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~l 30 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRL 30 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEE
Confidence 47899999999999999988876664433
No 245
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=71.84 E-value=16 Score=27.44 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=36.9
Q ss_pred EEcCCCCCCCHHHHHHHhhh-cC-CeeEEEeecCCCCCceEEEEecChHHHHHHHH
Q 022301 10 YVGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (299)
Q Consensus 10 ~V~nLp~~~t~~~l~~~F~~-~G-~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~ 63 (299)
|+-.++..++..+|++.++. |+ .|..|.......+.--|||.+....+|.....
T Consensus 85 yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 85 LVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 34457889999999999986 44 45555554443444579999988877665443
No 246
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=71.61 E-value=3.3 Score=32.05 Aligned_cols=69 Identities=13% Similarity=0.166 Sum_probs=47.2
Q ss_pred cEEEEeCCCCCCC-----HHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCc-eeeEE
Q 022301 109 YRVLVTGLPSSAS-----WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA-FSRAY 179 (299)
Q Consensus 109 ~~l~v~nl~~~~~-----~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~-~~~~~ 179 (299)
+.++++++...+. ......+|.+|.+....+++..- +..-|.|.++..|..|..++++..+.|. .+..+
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf--rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF--RRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh--ceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 5677788777642 23344566666655554444432 2556889999999999999999999998 44433
No 247
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=70.47 E-value=48 Score=27.83 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=12.9
Q ss_pred EEEecChHHHHHHHHhcCC-CCCCCceEEEE
Q 022301 49 FVEFEEARDAEDAIRGRDG-YDFDGHRLRVE 78 (299)
Q Consensus 49 fV~F~~~e~A~~A~~~l~~-~~~~g~~i~v~ 78 (299)
+|-|++...+.-.+..|.. +.++-+.|+|+
T Consensus 56 ilgfEDdVViefvynqLee~k~ldpkkmQiN 86 (354)
T KOG2146|consen 56 ILGFEDDVVIEFVYNQLEEAKNLDPKKMQIN 86 (354)
T ss_pred hhccccchhHHHHHHHHhhhcCCCchheeee
Confidence 3445544443334443443 34444444443
No 248
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=69.19 E-value=2.6 Score=28.68 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=21.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHh
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLF 27 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F 27 (299)
+...++|.|.|||..+++++|.+.+
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeE
Confidence 3567899999999999999998765
No 249
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=67.38 E-value=15 Score=23.08 Aligned_cols=21 Identities=10% Similarity=0.260 Sum_probs=17.2
Q ss_pred HHHHHHHHhcCCeeEEEEEeC
Q 022301 123 QDLKDHMRRAGDVCFSQVFRD 143 (299)
Q Consensus 123 ~~l~~~f~~~G~v~~~~~~~~ 143 (299)
++|+++|+..|+|.-+.+..-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~ 29 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHhcCcEEEEEEccc
Confidence 689999999999987766544
No 250
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=65.70 E-value=14 Score=31.98 Aligned_cols=57 Identities=21% Similarity=0.157 Sum_probs=38.1
Q ss_pred EEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHH
Q 022301 48 AFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKD 127 (299)
Q Consensus 48 afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~ 127 (299)
|||.|.+.++|..|++.+....- ..+.|..|.+ ...|...||.....+..++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APe-------------------------P~DI~W~NL~~~~~~r~~R~ 53 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPE-------------------------PDDIIWENLSISSKQRFLRR 53 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCC-------------------------cccccccccCCChHHHHHHH
Confidence 79999999999999995554432 4456655532 24577778866666666655
Q ss_pred HHHh
Q 022301 128 HMRR 131 (299)
Q Consensus 128 ~f~~ 131 (299)
++..
T Consensus 54 ~~~~ 57 (325)
T PF02714_consen 54 IIVN 57 (325)
T ss_pred HHHH
Confidence 5444
No 251
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=65.09 E-value=3.4 Score=39.61 Aligned_cols=27 Identities=7% Similarity=-0.032 Sum_probs=15.1
Q ss_pred CccEEEEeCCCC------CCCHHHHHHHHHhcC
Q 022301 107 SEYRVLVTGLPS------SASWQDLKDHMRRAG 133 (299)
Q Consensus 107 ~~~~l~v~nl~~------~~~~~~l~~~f~~~G 133 (299)
.....|++++.. .+.++.+.++...-|
T Consensus 144 ~~qR~f~gvvtk~~DtygfVD~dvffQls~~~g 176 (1194)
T KOG4246|consen 144 EPQRRFAGVVTKQTDTYGFVDQDVFFQLSKMQG 176 (1194)
T ss_pred CcceeeehhhhhhccccccccHHHHHHHHHHhc
Confidence 344566666432 345666666665555
No 252
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=64.66 E-value=44 Score=25.12 Aligned_cols=58 Identities=14% Similarity=0.124 Sum_probs=41.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEeCCCC-CEEEEEecChhhHHHHHHhc
Q 022301 109 YRVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSG-TTGIVDYTNYDDMKHAIKKL 166 (299)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~-~G-~v~~~~~~~~~~~-~~~fv~f~~~~~a~~a~~~l 166 (299)
.+.|+..++..++..+|++.++. |+ .|..|..+.-+.+ .-|||.+....+|.+....+
T Consensus 82 ~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~ki 142 (145)
T PTZ00191 82 NNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVANKI 142 (145)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 35666667888999999999988 55 5666666655544 27999998877776555443
No 253
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=64.36 E-value=31 Score=21.20 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=41.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecCh----HHHHHHHHh
Q 022301 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA----RDAEDAIRG 64 (299)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~----e~A~~A~~~ 64 (299)
||.|.||.-.--...|.+.+...-.|.++.+... .+.+-|.|... ++..++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~---~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE---TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT---TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC---CCEEEEEEecCCCCHHHHHHHHHH
Confidence 6788888777778889999999988999999643 46888888754 455556553
No 254
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=63.54 E-value=18 Score=24.46 Aligned_cols=50 Identities=22% Similarity=0.293 Sum_probs=33.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEec
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFE 53 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~ 53 (299)
+...-|||+|++..+-+.-...+....++=.-+-+..+....||+|-.+-
T Consensus 23 Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeC
Confidence 34556899999988876665555555554444444444447889998874
No 255
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=63.52 E-value=80 Score=29.92 Aligned_cols=99 Identities=14% Similarity=0.152 Sum_probs=61.6
Q ss_pred HHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcC--CCCC------CCceEEEEEccCCCCCCCCCC
Q 022301 20 EREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDF------DGHRLRVELAHGGRGRSSSDR 91 (299)
Q Consensus 20 ~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~--~~~~------~g~~i~v~~~~~~~~~~~~~~ 91 (299)
.++|.+.|..-+-|..|.+. +.||-++.+....-+...+..+. +..+ .|++|.|+|+.+.+.
T Consensus 60 A~~i~~~l~~~~~~~~veia----GpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNpt------ 129 (577)
T COG0018 60 AEEIAEKLDTDEIIEKVEIA----GPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPT------ 129 (577)
T ss_pred HHHHHHhccccCcEeEEEEc----CCCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCC------
Confidence 34555556555556777774 23444444443333333333333 2222 478999999865543
Q ss_pred CCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEeCCC
Q 022301 92 HSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGS 145 (299)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~~~~~~~ 145 (299)
..++|+.|-..+=-+-|..++...| .|.....+.|..
T Consensus 130 -----------------kplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G 167 (577)
T COG0018 130 -----------------GPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWG 167 (577)
T ss_pred -----------------CCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHH
Confidence 4578888887777888999999999 677677666654
No 256
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=61.92 E-value=20 Score=22.49 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=16.7
Q ss_pred HHHHHHhhhcCCeeEEEee
Q 022301 21 REVEDLFYKYGPIAHIDLK 39 (299)
Q Consensus 21 ~~l~~~F~~~G~v~~i~~~ 39 (299)
.+|+++|+.+|+|.-+.++
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999888884
No 257
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=61.71 E-value=11 Score=32.97 Aligned_cols=65 Identities=15% Similarity=0.323 Sum_probs=47.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEEeCCCC------CEEEEEecChhhHHHHHHhcCCCeecC
Q 022301 109 YRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDGSG------TTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (299)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~~~~~~~~~~------~~~fv~f~~~~~a~~a~~~l~g~~~~g 173 (299)
..+.|.+||+..++++|.+....+-. +....+...... +.|||.|...++...-...++|..+-.
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 57888999999999999988888763 333333322211 268999999999888888888887654
No 258
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=61.09 E-value=30 Score=22.25 Aligned_cols=59 Identities=22% Similarity=0.338 Sum_probs=39.5
Q ss_pred HHHHHHhhhcC-CeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 21 REVEDLFYKYG-PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 21 ~~l~~~F~~~G-~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
++|.+.|...| +|..|.-+. ++.+...-||+++...+... .|+=..+.+..|.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCC
Confidence 57888888888 566555433 34556788898887765333 3445667888888887643
No 259
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.69 E-value=1.4 Score=38.74 Aligned_cols=75 Identities=9% Similarity=-0.091 Sum_probs=56.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
+...|+..||...++.++.-+|.-||.|..+.+.. ++...-.+||...+. +|..+|..+....++|-.+.|..+.
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhhhcCc
Confidence 44567889999999999999999999998888732 344455677766543 5666777666777778888877665
No 260
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=56.68 E-value=54 Score=21.48 Aligned_cols=44 Identities=20% Similarity=0.269 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhc
Q 022301 122 WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 166 (299)
Q Consensus 122 ~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l 166 (299)
-.+|.+.+..+| +..+.+.-...+++.|+-+.+.+.++++++.+
T Consensus 36 i~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 36 IDELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 356777778888 44455544444558888888988888887765
No 261
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=55.47 E-value=43 Score=19.99 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=28.5
Q ss_pred HHHHHHhhhcC-CeeEEEeecCCCCCceEEEEecChHHHHHHH
Q 022301 21 REVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAI 62 (299)
Q Consensus 21 ~~l~~~F~~~G-~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~ 62 (299)
.+|.++|...| .|..+.+.......+...+.+.+.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 45667777666 6777777544445667777788877777665
No 262
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=54.26 E-value=29 Score=25.02 Aligned_cols=49 Identities=12% Similarity=0.201 Sum_probs=25.5
Q ss_pred ccEEEEeCCCCC---------CCHHHHHHHHHhcCCeeEEEEEeCCC--CCEEEEEecChh
Q 022301 108 EYRVLVTGLPSS---------ASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYD 157 (299)
Q Consensus 108 ~~~l~v~nl~~~---------~~~~~l~~~f~~~G~v~~~~~~~~~~--~~~~fv~f~~~~ 157 (299)
++.++|-|++.. ++.++|.+.|..|..+.. ....+.. .+++.|.|..--
T Consensus 8 PwmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv-~~l~~~~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 8 PWMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKV-KPLYGKQGHTGFAIVEFNKDW 67 (116)
T ss_dssp S-EEEEE----EE-TTS-EE---SHHHHHHHHH---SEE-EEEEETTEEEEEEEEE--SSH
T ss_pred CCEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCcee-EECcCCCCCcEEEEEEECCCh
Confidence 356777777543 356899999999988764 4444443 358999997643
No 263
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=54.08 E-value=27 Score=24.21 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=30.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecCh
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA 55 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~ 55 (299)
...-|||++++..+-+.--..+-+.++.=.-+-+..+....||+|-.+.+.
T Consensus 26 v~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 26 VRAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCCcEEEecCCC
Confidence 445689999888776554444444444322233334444458988887654
No 264
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=53.28 E-value=47 Score=23.01 Aligned_cols=51 Identities=16% Similarity=0.274 Sum_probs=32.2
Q ss_pred CCCCCCHHHHHHHhhhc--------CCeeEEEee--------cCCCCCc-eEEEEecChHHHHHHHHh
Q 022301 14 LPGDIREREVEDLFYKY--------GPIAHIDLK--------IPPRPPG-YAFVEFEEARDAEDAIRG 64 (299)
Q Consensus 14 Lp~~~t~~~l~~~F~~~--------G~v~~i~~~--------~~~~~~g-~afV~F~~~e~A~~A~~~ 64 (299)
|.++++++++.++...+ |.|..+... ..+...| |.++.|....++...++.
T Consensus 14 l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 14 LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 56777888766665443 466665541 2334445 688889877777777663
No 265
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=52.44 E-value=35 Score=22.90 Aligned_cols=35 Identities=34% Similarity=0.414 Sum_probs=24.2
Q ss_pred CeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCC
Q 022301 32 PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68 (299)
Q Consensus 32 ~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~ 68 (299)
.|.++... +..+||-|||=.++.++..|+..+.+.
T Consensus 33 ~I~Si~~~--~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAP--DSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE---TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEe--CCCceEEEEEeCCHHHHHHHHhcccce
Confidence 34454443 346899999999999999999976653
No 266
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=51.66 E-value=41 Score=28.44 Aligned_cols=58 Identities=5% Similarity=0.081 Sum_probs=45.9
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC-----------CCEEEEEecChhhHHHH
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-----------GTTGIVDYTNYDDMKHA 162 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~-----------~~~~fv~f~~~~~a~~a 162 (299)
.-....|.+.|+...++-..+...|-+||+|+.|.++.+.. .....+.|.+.+.+..-
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdF 80 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDF 80 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHH
Confidence 33446788899999999999999999999999999998861 12677888887776543
No 267
>PRK11901 hypothetical protein; Reviewed
Probab=51.41 E-value=40 Score=29.02 Aligned_cols=60 Identities=17% Similarity=0.278 Sum_probs=37.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCC---EEEE--EecChhhHHHHHHhcCCCe
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGT---TGIV--DYTNYDDMKHAIKKLDDSE 170 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~---~~fv--~f~~~~~a~~a~~~l~g~~ 170 (299)
..++|-|..+ ..++.|..+..+++ +..++++.....| |..| .|.+.++|..|+..|-...
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 3445555443 45788888888876 3334454443333 3333 5889999999999886543
No 268
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=50.75 E-value=13 Score=20.51 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=10.4
Q ss_pred CCCCHHHHHHHhhhcCC
Q 022301 16 GDIREREVEDLFYKYGP 32 (299)
Q Consensus 16 ~~~t~~~l~~~F~~~G~ 32 (299)
.++++++|++.|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 46889999999988653
No 269
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=49.87 E-value=7.4 Score=33.52 Aligned_cols=48 Identities=17% Similarity=0.100 Sum_probs=38.3
Q ss_pred HHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCC
Q 022301 20 EREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68 (299)
Q Consensus 20 ~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~ 68 (299)
...|.+++.+.|.|..-.|..+ .+.|.+||..-.++++.+++..|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rt-FNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRT-FNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHH-hcCccceEEEEcHHHHHHHHHHHHhc
Confidence 4678888889998877666322 34688999999999999999988875
No 270
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=49.67 E-value=60 Score=22.05 Aligned_cols=65 Identities=11% Similarity=0.232 Sum_probs=42.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhh-hcC-CeeEEEeecCCC----CCceEEEEecChHHHHHHHHhcCC
Q 022301 2 SSRASRTLYVGNLPGDIREREVEDLFY-KYG-PIAHIDLKIPPR----PPGYAFVEFEEARDAEDAIRGRDG 67 (299)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G-~v~~i~~~~~~~----~~g~afV~F~~~e~A~~A~~~l~~ 67 (299)
+.+++++||+ +|-..++-..|.+.|+ .-| ...++.+..+|. .+.=+=+.|++-++.+...+.+-|
T Consensus 30 v~qd~telfF-kiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG 100 (103)
T COG5227 30 VDQDGTELFF-KIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGG 100 (103)
T ss_pred ecCCCCEEEE-EEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcC
Confidence 3567888887 8888899899999988 445 456666655432 112235567777666666665544
No 271
>PF15063 TC1: Thyroid cancer protein 1
Probab=49.59 E-value=12 Score=24.45 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=20.9
Q ss_pred EEcCCCCCCCHHHHHHHhhhcCCe
Q 022301 10 YVGNLPGDIREREVEDLFYKYGPI 33 (299)
Q Consensus 10 ~V~nLp~~~t~~~l~~~F~~~G~v 33 (299)
-+.||-.+++.++|+.||..-|..
T Consensus 29 asaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 29 ASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hhhhhhhccCHHHHHHHHHHccch
Confidence 356888999999999999999864
No 272
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=49.33 E-value=31 Score=28.77 Aligned_cols=36 Identities=19% Similarity=0.433 Sum_probs=28.6
Q ss_pred CCCCeEEEcCCCCC------------CCHHHHHHHhhhcCCeeEEEee
Q 022301 4 RASRTLYVGNLPGD------------IREREVEDLFYKYGPIAHIDLK 39 (299)
Q Consensus 4 ~~~~~l~V~nLp~~------------~t~~~l~~~F~~~G~v~~i~~~ 39 (299)
.-+.|||+.+||-. -+++-|...|..||.|..|.|+
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 44678999999863 3466799999999999988883
No 273
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=49.12 E-value=76 Score=29.73 Aligned_cols=93 Identities=10% Similarity=0.036 Sum_probs=56.9
Q ss_pred ceEEEEecChHHHHHHHHhcCCCCCCCceEEE---EEccCCCC--CC--CCCCCCCCCCCCCCCCCCCCccEEEEeCCCC
Q 022301 46 GYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV---ELAHGGRG--RS--SSDRHSSHSSGRGRGVSRRSEYRVLVTGLPS 118 (299)
Q Consensus 46 g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v---~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~ 118 (299)
--|||++++++-.+-....|+-..+.+..|.- .||..-.. .. ...... .=..|+......+|+.+|..
T Consensus 237 i~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~Hq-----IFlEPEGl~~~evY~nGlST 311 (621)
T COG0445 237 IPCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQ-----IFLEPEGLDTDEVYPNGLST 311 (621)
T ss_pred cceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccce-----EEecCCCCCCceEecCcccc
Confidence 46999999998888777777776655433331 11110000 00 000000 00113444567899999999
Q ss_pred CCCHHHHHHHHHhcCCeeEEEEEeC
Q 022301 119 SASWQDLKDHMRRAGDVCFSQVFRD 143 (299)
Q Consensus 119 ~~~~~~l~~~f~~~G~v~~~~~~~~ 143 (299)
.+.++.-.++....-.++.+.|...
T Consensus 312 SlP~dVQ~~~irsipGlEna~i~rp 336 (621)
T COG0445 312 SLPEDVQEQIIRSIPGLENAEILRP 336 (621)
T ss_pred cCCHHHHHHHHHhCcccccceeecc
Confidence 9988888888888888888887765
No 274
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=49.04 E-value=1e+02 Score=22.59 Aligned_cols=70 Identities=14% Similarity=0.044 Sum_probs=48.8
Q ss_pred CCeEEEcCCCCC---CCHHHHHHHhhhcC-CeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 6 SRTLYVGNLPGD---IREREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 6 ~~~l~V~nLp~~---~t~~~l~~~F~~~G-~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.-.|.|...... .+...|.+++..-| .+..+... .+...|.|.+.++-..|...|....-.+..|.+..+
T Consensus 35 dpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~-----~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 35 ESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE-----NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred CceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee-----CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 446677766433 56677888888777 44555553 347899999999999998887776655656665554
No 275
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=48.97 E-value=74 Score=20.79 Aligned_cols=43 Identities=14% Similarity=0.097 Sum_probs=30.5
Q ss_pred HHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhc
Q 022301 21 REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (299)
Q Consensus 21 ~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l 65 (299)
.+|.+++..+| +....|.-.|. -++.|+.+.+.+.+..++..+
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~-G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGG-GPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSS-SSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCC-CCeEEEEECCHHHHHHHHHHH
Confidence 35777778888 66666653322 357888888998988887765
No 276
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=48.69 E-value=54 Score=21.13 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=32.0
Q ss_pred HHHHHHHHhcC-CeeEEEEEeCCCCC----EEEEEecChhhHHHHHHhcCCCeecCc
Q 022301 123 QDLKDHMRRAG-DVCFSQVFRDGSGT----TGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (299)
Q Consensus 123 ~~l~~~f~~~G-~v~~~~~~~~~~~~----~~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (299)
++|.+.|..+| ++..+..+....+. +-+|+.....+-.. .|+=+.|+|.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~ 55 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQ 55 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCe
Confidence 46888899999 77888887776533 66676655543333 3455556665
No 277
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=48.36 E-value=86 Score=21.39 Aligned_cols=45 Identities=9% Similarity=-0.041 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcC-CeeEEEEEeCCCCCEEEEEecChhhHHHHHHhc
Q 022301 122 WQDLKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 166 (299)
Q Consensus 122 ~~~l~~~f~~~G-~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l 166 (299)
.+.+.++++.+| ++..+.+...+......+++.+.+.|.++.-.+
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHH
Confidence 466777888876 788888887776667888888888877666444
No 278
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=47.54 E-value=82 Score=24.23 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=40.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcC
Q 022301 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (299)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~ 66 (299)
++-| +|+..+.++-|.++-+-+|-|....- ..-.+.|.+.+..+.|++.|.
T Consensus 114 ~iRv-~l~~~i~~erl~ei~E~~gvI~Efee-------~~~V~I~Gdke~Ik~aLKe~s 164 (169)
T PF09869_consen 114 TIRV-KLKKPIQEERLQEISEWHGVIFEFEE-------DDKVVIEGDKERIKKALKEFS 164 (169)
T ss_pred eEEE-ecCccchHHHHHHHHHHhceeEEecC-------CcEEEEeccHHHHHHHHHHHH
Confidence 4445 89999999999999999998877621 134888999999999998663
No 279
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=47.21 E-value=35 Score=23.85 Aligned_cols=47 Identities=26% Similarity=0.396 Sum_probs=29.2
Q ss_pred eEEEcCCCCCCCHHHHH---HHhhhcCCeeEEEe-----ecCCCCCceEEEEecC
Q 022301 8 TLYVGNLPGDIREREVE---DLFYKYGPIAHIDL-----KIPPRPPGYAFVEFEE 54 (299)
Q Consensus 8 ~l~V~nLp~~~t~~~l~---~~F~~~G~v~~i~~-----~~~~~~~g~afV~F~~ 54 (299)
..|+.|||.++.+.++. .+|..+++-..|.. .....+.|++.+.+..
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~ae 66 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVAE 66 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEEE
Confidence 45889999998887755 45556654455554 2334566777666653
No 280
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=46.24 E-value=4.5 Score=36.89 Aligned_cols=72 Identities=14% Similarity=0.131 Sum_probs=54.5
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
....+.+++.|++++++-.+|..+|+.+-.+..+.+-..... .+++|.|.--.....|+.+||+..+.....
T Consensus 228 ~hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 228 THKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred hhHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 345678999999999999999999998876666555443222 278899988777788888888877766543
No 281
>PRK11901 hypothetical protein; Reviewed
Probab=46.08 E-value=68 Score=27.66 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=36.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEE--EEecChHHHHHHHHhcCCC
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAF--VEFEEARDAEDAIRGRDGY 68 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~af--V~F~~~e~A~~A~~~l~~~ 68 (299)
-||.|-.+ -.++.|..|...++ +..+++.. .|+.+ |.+ -.|.+.++|..|+..|-..
T Consensus 246 YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 246 YTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred eEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHH
Confidence 34544443 45777888888776 34455532 34443 333 3589999999999987653
No 282
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=45.96 E-value=55 Score=22.83 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=37.9
Q ss_pred CCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCC
Q 022301 17 DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG 67 (299)
Q Consensus 17 ~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~ 67 (299)
+-++++|..+...-|.|.+|.+..+.-+.--|.+...+..+++..+..|+.
T Consensus 8 ~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 8 DEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp GGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhc
Confidence 345677888888778999999965543344678888999999999998764
No 283
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=44.04 E-value=55 Score=30.28 Aligned_cols=59 Identities=22% Similarity=0.323 Sum_probs=44.0
Q ss_pred EEcCCCCCCC---HHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceE
Q 022301 10 YVGNLPGDIR---EREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRL 75 (299)
Q Consensus 10 ~V~nLp~~~t---~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i 75 (299)
+||||+.=.. ...+..+-.+||+|-.+++-. .-.|...+.+.|.+|+. -|+..|.+++.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~------~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS------VPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC------ceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 4677755333 344666667999999888821 23788889999999999 78899998886
No 284
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=43.73 E-value=90 Score=24.85 Aligned_cols=61 Identities=18% Similarity=0.169 Sum_probs=40.5
Q ss_pred CCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCC-CCCC--CceEEEEE
Q 022301 18 IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG-YDFD--GHRLRVEL 79 (299)
Q Consensus 18 ~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~-~~~~--g~~i~v~~ 79 (299)
.+.++..+++..++.-. +.|+.++...|-+.+...+.++|..|+..+-. ..|. +..|.|+.
T Consensus 24 ~~~~~A~~~l~~~~~p~-~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIEE 87 (194)
T PF01071_consen 24 TDYEEALEYLEEQGYPY-VVIKADGLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIEE 87 (194)
T ss_dssp SSHHHHHHHHHHHSSSE-EEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEEE
T ss_pred CCHHHHHHHHHhcCCCc-eEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEEe
Confidence 35677777777766433 56666776666668888999999999887543 3332 44555543
No 285
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=43.68 E-value=7.7 Score=24.88 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=26.1
Q ss_pred HHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhc
Q 022301 21 REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (299)
Q Consensus 21 ~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l 65 (299)
++|++.|..++....+.- -.+|..|.+.++|..++..+
T Consensus 27 ~~v~~~~~~~~~f~k~vk-------L~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVK-------LKAFSPFKSAEEALENANAI 64 (67)
T ss_pred HHHHHHHcCHHHHhhhhh-------hhhccCCCCHHHHHHHHHHh
Confidence 577777776554433322 26799999999998887654
No 286
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=43.61 E-value=1e+02 Score=23.33 Aligned_cols=33 Identities=39% Similarity=0.478 Sum_probs=25.0
Q ss_pred eeEEEeecCCCCCceEEEEecChHHHHHHHHhcCC
Q 022301 33 IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG 67 (299)
Q Consensus 33 v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~ 67 (299)
|.+|.+. ...+||.||+....+++..++..+.+
T Consensus 36 i~~i~vp--~~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAP--PELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEcc--CCCCcEEEEEEEChHHHHHHHhcCCC
Confidence 5555553 24689999999988899999886655
No 287
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=41.84 E-value=14 Score=32.56 Aligned_cols=58 Identities=22% Similarity=0.273 Sum_probs=43.2
Q ss_pred CCeEEEcCCCCCCC--------HHHHHHHhhh--cCCeeEEEeec---CCCCCceEEEEecChHHHHHHHH
Q 022301 6 SRTLYVGNLPGDIR--------EREVEDLFYK--YGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIR 63 (299)
Q Consensus 6 ~~~l~V~nLp~~~t--------~~~l~~~F~~--~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~ 63 (299)
.+.+|+.++....+ .+++...|.. .+++..|.+.. +....|..|++|...+.|+.++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 34566666666544 3489999998 67788887732 45677889999999999988875
No 288
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=41.55 E-value=56 Score=22.18 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=28.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhh-cCCeeEEEeecCCCCCceEEEEecC
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYK-YGPIAHIDLKIPPRPPGYAFVEFEE 54 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~i~~~~~~~~~g~afV~F~~ 54 (299)
...-|||++++..+-+.--..+-+. .++=.-+-+..+....||+|-.+-+
T Consensus 24 v~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 24 PRAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeCCCCCCcEEEecCC
Confidence 4556899999887765433333333 2332223333344556888877764
No 289
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=41.27 E-value=24 Score=26.43 Aligned_cols=35 Identities=17% Similarity=0.077 Sum_probs=29.1
Q ss_pred CeEEEcCCCCC-CCHHHHHHHhhhcCCeeEEEeecC
Q 022301 7 RTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIP 41 (299)
Q Consensus 7 ~~l~V~nLp~~-~t~~~l~~~F~~~G~v~~i~~~~~ 41 (299)
.-|.|.|||.. .+++-|.++.+.+|++..+.....
T Consensus 105 vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 105 VWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred hhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 34778899998 777889999999999999988544
No 290
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=40.89 E-value=1.3e+02 Score=21.23 Aligned_cols=43 Identities=12% Similarity=0.045 Sum_probs=27.1
Q ss_pred HHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHH
Q 022301 21 REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (299)
Q Consensus 21 ~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~ 63 (299)
.+|.+++..+|.-..-.+.....+.-|||+++.+.+..-.++.
T Consensus 27 PE~~a~lk~agi~nYSIfLde~~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAGIRNYSIFLDEEENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcCCceeEEEecCCcccEEEEEEEcChHHHHHHHh
Confidence 4578888888843333333333456799999996655555544
No 291
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=39.90 E-value=1.2e+02 Score=22.64 Aligned_cols=27 Identities=33% Similarity=0.445 Sum_probs=21.7
Q ss_pred CCCCCceEEEEecChHHHHHHHHhcCC
Q 022301 41 PPRPPGYAFVEFEEARDAEDAIRGRDG 67 (299)
Q Consensus 41 ~~~~~g~afV~F~~~e~A~~A~~~l~~ 67 (299)
....+||-||++....+...++..+.|
T Consensus 34 p~~fpGYvFV~~~~~~~~~~~i~~~~g 60 (145)
T TIGR00405 34 PESLKGYILVEAETKIDMRNPIIGVPH 60 (145)
T ss_pred cCCCCcEEEEEEECcHHHHHHHhCCCC
Confidence 345789999999988888888876665
No 292
>PF03389 MobA_MobL: MobA/MobL family; InterPro: IPR005053 This entry represents a domain found at the N terminus of MobA in Escherichia coli, and MobL in Thiobacillus ferrooxidans (Acidithiobacillus ferrooxidans), as well as in conjugal transfer protein TraA. MobA and MobL are mobilisation proteins, which are essential for specific plasmid transfer.; GO: 0009291 unidirectional conjugation; PDB: 2NS6_A.
Probab=39.66 E-value=46 Score=26.96 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=27.7
Q ss_pred EEcCCCCCCCHHH--------HHHHhhhcCCeeEEEeecCCCCCceEEEEecChH
Q 022301 10 YVGNLPGDIRERE--------VEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEAR 56 (299)
Q Consensus 10 ~V~nLp~~~t~~~--------l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e 56 (299)
|+-.||..++.++ +.++|..+|-+.++-|..++.....|-|.|.+-.
T Consensus 71 ~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~aIH~d~~~NpHaHim~t~R~ 125 (216)
T PF03389_consen 71 FEIALPRELTLEQNIELVREFAQENFVDYGMAADVAIHDDGPRNPHAHIMFTTRP 125 (216)
T ss_dssp EEEE--TTS-HHHHHHHHHHHHHHHHTTTT--EEEEEEEETTTEEEEEEEE--B-
T ss_pred eeeeCCccCCHHHHHHHHHHHHHHHhhccceEEEEEEecCCCCCCEEEEEeecCc
Confidence 4558999999887 3344566788999988755445668899888664
No 293
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=39.58 E-value=88 Score=20.33 Aligned_cols=39 Identities=26% Similarity=0.397 Sum_probs=28.2
Q ss_pred HhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCC
Q 022301 26 LFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (299)
Q Consensus 26 ~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~ 70 (299)
-+..||.|..+.=. ..|+ |.|-+.++|+..++.|....|
T Consensus 16 ~L~kfG~i~Y~Skk-----~kYv-vlYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 16 QLRKFGDIHYVSKK-----MKYV-VLYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred hHhhcccEEEEECC-----ccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 35689999887653 3464 557789999999988876544
No 294
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=39.41 E-value=44 Score=27.95 Aligned_cols=27 Identities=26% Similarity=0.112 Sum_probs=22.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCe
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYGPI 33 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~v 33 (299)
-...|+|||++++-.-|..++...-.+
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFII 122 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCcc
Confidence 456799999999999999999765444
No 295
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=38.32 E-value=74 Score=21.82 Aligned_cols=53 Identities=11% Similarity=0.022 Sum_probs=33.2
Q ss_pred CCCCCCCHHHHHHHhhhcCCe-eEEEeecCCCCCceEEEEecChHHHHHHHHhcC
Q 022301 13 NLPGDIREREVEDLFYKYGPI-AHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (299)
Q Consensus 13 nLp~~~t~~~l~~~F~~~G~v-~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~ 66 (299)
-+-+.+++.+|..-|-.-|.= .-..+-. ..=+.+|.|.|.+.+.+..|...|-
T Consensus 19 S~~p~l~~~~i~~Q~~~~gkk~~pp~lRk-D~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 19 SQTPNLDNNQILKQFPFPGKKNKPPSLRK-DYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred ecCcccChhHHHHhccCCCcccCCchhcc-ccceEeEEEECCChHHHHHHHHHHH
Confidence 455677888887777555521 1111100 1113699999999999999988653
No 296
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=37.85 E-value=1.2e+02 Score=20.24 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=26.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecC----hHHHHHHHHhcCCCCCCCceEEEE
Q 022301 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEE----ARDAEDAIRGRDGYDFDGHRLRVE 78 (299)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~----~e~A~~A~~~l~~~~~~g~~i~v~ 78 (299)
.|-+++|.+.-.. +++-.++.-..|-.+.|+ |- ...|||.|.. .+....++..|....+..+.|+|+
T Consensus 2 ~lkfg~It~eeA~-~~QYeLsk~~~vyRvFiN--gY-ar~g~VifDe~kl~~e~lL~~le~~kpEVi~ek~lTve 72 (88)
T PF11491_consen 2 DLKFGNITPEEAM-VKQYELSKNEAVYRVFIN--GY-ARNGFVIFDESKLSKEELLEMLEEFKPEVIEEKELTVE 72 (88)
T ss_dssp EEE--S-TTTTTH-HHHHTTTTTTTB--------TT-SS--EEE--B-S-SHHHH---HHHTTT-SS-------S
T ss_pred ccccCCCCHHHHH-HHHHHhhcccceeeeeec--cc-ccceEEEECcccCCHHHHHHHHHhcChhheeeccccHH
Confidence 3556777665332 233345566677777775 23 3378999974 477788899899988888888874
No 297
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=37.64 E-value=1.2e+02 Score=26.27 Aligned_cols=50 Identities=18% Similarity=0.200 Sum_probs=30.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEec
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFE 53 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~ 53 (299)
+.|..++|+|-+-.+---+.|.+....-|--....++.+ .+.|.|-|...
T Consensus 78 ~~p~~~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d-~~TGtCavli~ 127 (343)
T KOG2854|consen 78 QQPGATVFFGSVGKDKFGELLKSKARAAGVNVHYQVKED-GPTGTCAVLIT 127 (343)
T ss_pred cCCCceEEEeeccCchHHHHHHHHHHhcCceEEEEeccC-CCCceEEEEEe
Confidence 457799999988777666677777666663333333333 33455554443
No 298
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=37.31 E-value=2e+02 Score=26.41 Aligned_cols=61 Identities=16% Similarity=0.339 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHhhhcCCeeEEEee-cCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCCC
Q 022301 15 PGDIREREVEDLFYKYGPIAHIDLK-IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (299)
Q Consensus 15 p~~~t~~~l~~~F~~~G~v~~i~~~-~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 84 (299)
+...++++|.++|.+-+.-.++++. .+..+.|+-+|.|... .||..+.|..|.|...+...
T Consensus 48 ~~a~~~Kei~~~l~~~n~~~nlk~~~~~td~~G~t~vr~~q~---------vnGvpv~g~~v~vh~dk~g~ 109 (507)
T COG3227 48 KSAPNEKEILQFLENVNADNNLKAISTDTDPNGFTHVRYQQV---------VNGVPVKGSEVIVHLDKNGV 109 (507)
T ss_pred cccCChHHHHHHHhcCChhhceeeEEeeccCCCceEEEEEee---------ECCeeccCceEEEEECCCCc
Confidence 3357788898888865555666663 2345688999999755 89999999999998875443
No 299
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=36.83 E-value=21 Score=33.51 Aligned_cols=71 Identities=18% Similarity=0.132 Sum_probs=52.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
+||+.|-...-+..-+...+..++++....+.. .+...+-||++|..+..|..|.. |.+..+....+++..
T Consensus 513 ~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s-~p~k~fa~~~~ks~p 586 (681)
T KOG3702|consen 513 TIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKS-LPNKKFASKCLKSHP 586 (681)
T ss_pred ceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhc-cccccccccceeccc
Confidence 778877777777777888888888777666632 23344589999999999887777 777777766665543
No 300
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=36.60 E-value=1.8e+02 Score=22.08 Aligned_cols=44 Identities=9% Similarity=0.028 Sum_probs=27.8
Q ss_pred HHHHHHHhcCC-eeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCC
Q 022301 124 DLKDHMRRAGD-VCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD 168 (299)
Q Consensus 124 ~l~~~f~~~G~-v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g 168 (299)
.|.......|. |..+.+ ...-.||.||+....+++..++..+.|
T Consensus 24 ~L~~~~~~~~~~i~~i~v-p~~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 24 MLAMRAKKENLPIYAILA-PPELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred HHHHHHHhCCCcEEEEEc-cCCCCcEEEEEEEChHHHHHHHhcCCC
Confidence 34444433342 333333 334567999999988888888887765
No 301
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=36.39 E-value=1.3e+02 Score=19.86 Aligned_cols=60 Identities=7% Similarity=0.137 Sum_probs=36.0
Q ss_pred EEEeCCCCCCCHHHHHHHHHh-------cCCeeEEEEEeCCCCC--EEEEEecChhhHHHHHHhcCCCee
Q 022301 111 VLVTGLPSSASWQDLKDHMRR-------AGDVCFSQVFRDGSGT--TGIVDYTNYDDMKHAIKKLDDSEF 171 (299)
Q Consensus 111 l~v~nl~~~~~~~~l~~~f~~-------~G~v~~~~~~~~~~~~--~~fv~f~~~~~a~~a~~~l~g~~~ 171 (299)
|...+||..++.++|.+.-.. +..|..+....+...+ ||+.+=.+.+...++.+.- |...
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~a-G~p~ 71 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARRA-GLPA 71 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHHc-CCCc
Confidence 445678888898888776554 3456666655555455 5555545555555555533 5544
No 302
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=35.94 E-value=1.9e+02 Score=23.54 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCe
Q 022301 123 QDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE 170 (299)
Q Consensus 123 ~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~ 170 (299)
..|+.+|..||-+--|. +-||-.....+..+|.+||....|..
T Consensus 125 kaLkpil~~~gi~GLVE-----PLGF~~csLRsk~eA~~aI~aa~g~~ 167 (272)
T COG4130 125 KALKPILDEYGITGLVE-----PLGFRVCSLRSKAEAAEAIRAAGGER 167 (272)
T ss_pred HHhhHHHHHhCcccccc-----ccCchhhhhhhHHHHHHHHHHhCCCc
Confidence 45667777777432221 11344455678899999999887763
No 303
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=35.68 E-value=1.2e+02 Score=19.43 Aligned_cols=46 Identities=24% Similarity=0.320 Sum_probs=36.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecC
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEE 54 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~ 54 (299)
..+|+|.++.-.--...|...+.....|..+.+... .+-++|.|.+
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~---~~~~~V~~d~ 48 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE---KGTATVTFDS 48 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc---cCeEEEEEcC
Confidence 357888888777777789999999988999988643 4568999987
No 304
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=35.06 E-value=14 Score=23.62 Aligned_cols=58 Identities=21% Similarity=0.203 Sum_probs=29.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeE-EEeecCCCCCceEE-EEecChHHHHHHHHhcC
Q 022301 8 TLYVGNLPGDIREREVEDLFYKYGPIAH-IDLKIPPRPPGYAF-VEFEEARDAEDAIRGRD 66 (299)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~-i~~~~~~~~~g~af-V~F~~~e~A~~A~~~l~ 66 (299)
.|.|+.+...-..+.+..-+...|.-.. +.+.. +...-..+ -.|.+.++|..++..|.
T Consensus 6 ~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~-~~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 6 YVQVGSFSSEENAERLLAKLKKKGPDAYVVQVSK-GGPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHT-----EEEEE-ETTCEEEEECCECTCCHHHHHHHHHH
T ss_pred EEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEec-CCceEEEEECCCCCHHHHHHHHHHHh
Confidence 4566655544444444444554454332 22221 22222233 36899999999988776
No 305
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=35.04 E-value=1.3e+02 Score=27.97 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=35.9
Q ss_pred CCHHHHHHHhh----hcCCeeEEEeecC--CCCCceEEEEecChHHHHHHHHhcC
Q 022301 18 IREREVEDLFY----KYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRD 66 (299)
Q Consensus 18 ~t~~~l~~~F~----~~G~v~~i~~~~~--~~~~g~afV~F~~~e~A~~A~~~l~ 66 (299)
.+.-+|..+|. .+|-|..+.|... +......++.|.+.++|..|+..+-
T Consensus 201 ~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 201 SPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 33457777776 7888999888443 2334577889999999999988754
No 306
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=34.76 E-value=27 Score=28.44 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=27.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Q 022301 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQV 140 (299)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~ 140 (299)
.+||+.|+|...+++.|..+..++|.+..+.+
T Consensus 41 d~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 41 DCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 58999999999999999999999996655443
No 307
>PRK02886 hypothetical protein; Provisional
Probab=34.54 E-value=1.1e+02 Score=20.76 Aligned_cols=38 Identities=18% Similarity=0.360 Sum_probs=27.7
Q ss_pred hhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCC
Q 022301 27 FYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (299)
Q Consensus 27 F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~ 70 (299)
+..||.|..+.=. ..| .|.|-+.++|+..++.|....|
T Consensus 21 LrkyG~I~Y~Skr-----~kY-vvlYvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 21 LRKFGNVHYVSKR-----LKY-AVLYCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred HhhcCcEEEEecc-----ccE-EEEEECHHHHHHHHHHHhcCCC
Confidence 5689999887653 335 4557789999999988876543
No 308
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=34.35 E-value=83 Score=25.22 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=36.8
Q ss_pred CCHHHHHHHhhhcCC---eeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCC
Q 022301 18 IREREVEDLFYKYGP---IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (299)
Q Consensus 18 ~t~~~l~~~F~~~G~---v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~ 71 (299)
.+.+++.+....+|. |....+...+..++=+...-.+.++|..+...|-|..|.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 467788887777764 455555555666764444445889999999888887765
No 309
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=34.29 E-value=1.5e+02 Score=19.99 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=35.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhh---cCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhc
Q 022301 8 TLYVGNLPGDIREREVEDLFYK---YGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGR 65 (299)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~---~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l 65 (299)
-|+|..++..++-++|.+.... +-.-..+.|++ +|. .|.|.+.++-+.|+..+
T Consensus 10 di~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGD-----p~tiSS~~EL~EA~rl~ 68 (83)
T cd06404 10 DIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGD-----PCTISSQMELEEAFRLY 68 (83)
T ss_pred cEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCC-----ceeecCHHHHHHHHHHH
Confidence 4788899999998887665542 22223344422 233 57889999999998843
No 310
>PRK10905 cell division protein DamX; Validated
Probab=34.15 E-value=1.7e+02 Score=25.31 Aligned_cols=59 Identities=14% Similarity=0.258 Sum_probs=36.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEE----EecChhhHHHHHHhcCCC
Q 022301 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIV----DYTNYDDMKHAIKKLDDS 169 (299)
Q Consensus 108 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv----~f~~~~~a~~a~~~l~g~ 169 (299)
.++|-|..+ .+.+.|.++..+.|--.+..+....++.-.|| .|.+.++|+.|+..|-..
T Consensus 247 ~YTLQL~A~---Ss~~~l~~fakKlgL~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 247 HYTLQLSSS---SNYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred ceEEEEEec---CCHHHHHHHHHHcCCCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHH
Confidence 345555544 46788888888886433333333333332333 488999999999988543
No 311
>PRK02302 hypothetical protein; Provisional
Probab=33.84 E-value=1.1e+02 Score=20.80 Aligned_cols=38 Identities=24% Similarity=0.419 Sum_probs=27.7
Q ss_pred hhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCC
Q 022301 27 FYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (299)
Q Consensus 27 F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~ 70 (299)
+.+||.|..+.=. ..| .|.|-+.++|+..++.|....|
T Consensus 23 LrkfG~I~Y~Skk-----~kY-vvlYvn~~~~e~~~~kl~~l~f 60 (89)
T PRK02302 23 LSKYGDIVYHSKR-----SRY-LVLYVNKEDVEQKLEELSKLKF 60 (89)
T ss_pred HhhcCcEEEEecc-----ccE-EEEEECHHHHHHHHHHHhcCCC
Confidence 4589999887653 336 4557789999999988876543
No 312
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=33.65 E-value=1.1e+02 Score=26.68 Aligned_cols=48 Identities=13% Similarity=0.231 Sum_probs=30.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhhh-cCCeeEEEeecC--------CCCCceEEEEecChH
Q 022301 8 TLYVGNLPGDIREREVEDLFYK-YGPIAHIDLKIP--------PRPPGYAFVEFEEAR 56 (299)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~-~G~v~~i~~~~~--------~~~~g~afV~F~~~e 56 (299)
|+++ .|...++.++|.++|.. |..-.-|+|... -....||.|-|...+
T Consensus 248 Ti~~-~l~~~~t~~~i~~~y~~~Y~~epfVrv~~~~~~P~~k~V~GsN~cdIgf~~d~ 304 (349)
T COG0002 248 TIYL-KLKDLVTLEELHAAYEEFYAGEPFVRVVPEGGYPDTKAVAGSNFCDIGFAVDE 304 (349)
T ss_pred EEEE-ecCCCCCHHHHHHHHHHHhCCCCeEEEecCCCCCChhhhcCCcceEEEEEEcC
Confidence 3444 45556999999999884 444444554221 134578888887665
No 313
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=33.04 E-value=1.2e+02 Score=18.49 Aligned_cols=32 Identities=16% Similarity=0.050 Sum_probs=19.7
Q ss_pred EEEcCCCCCCCHHHHHHHhhhcC-CeeEEEeec
Q 022301 9 LYVGNLPGDIREREVEDLFYKYG-PIAHIDLKI 40 (299)
Q Consensus 9 l~V~nLp~~~t~~~l~~~F~~~G-~v~~i~~~~ 40 (299)
|+|..-...-.-.+|.++|..+| .|..+....
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~ 34 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGR 34 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEec
Confidence 33433333345667888888886 677777644
No 314
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=32.37 E-value=34 Score=28.56 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhh
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFY 28 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~ 28 (299)
....++|+|||++++..-|.+++.
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHH
T ss_pred CCceEEEEEecccchHHHHHHHhh
Confidence 356789999999999999999987
No 315
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.67 E-value=1.5e+02 Score=22.17 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=36.4
Q ss_pred CCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhc
Q 022301 13 NLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (299)
Q Consensus 13 nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l 65 (299)
-|+..+.++-|+++.+..|-|....-. --.+.|.+.+.+.+|++.+
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~E~-------D~V~i~Gd~drVk~aLke~ 163 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFEEY-------DLVAIYGDSDRVKKALKEI 163 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEeeec-------cEEEEeccHHHHHHHHHHH
Confidence 366778889999999999988776632 2367789999999999865
No 316
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=31.62 E-value=16 Score=31.52 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=40.8
Q ss_pred CHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCC
Q 022301 121 SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS 169 (299)
Q Consensus 121 ~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~ 169 (299)
+...|.+.+.++|.|..-.+...-+-|.+||..-..+++.++++.|.+.
T Consensus 274 ~~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 274 PPPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 3577888889999887766666666678999999999999999999875
No 317
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=31.53 E-value=1.9e+02 Score=20.41 Aligned_cols=42 Identities=17% Similarity=0.367 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcCCeeEEEEEeCC-CCCEEEEEecChhhHHHHH
Q 022301 122 WQDLKDHMRRAGDVCFSQVFRDG-SGTTGIVDYTNYDDMKHAI 163 (299)
Q Consensus 122 ~~~l~~~f~~~G~v~~~~~~~~~-~~~~~fv~f~~~~~a~~a~ 163 (299)
..+|..+++.+|--....++..+ +.-||++++.+.++...++
T Consensus 26 WPE~~a~lk~agi~nYSIfLde~~n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 26 WPELLALLKEAGIRNYSIFLDEEENLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred cHHHHHHHHHcCCceeEEEecCCcccEEEEEEEcChHHHHHHH
Confidence 35677888888865544333332 3349999999554444433
No 318
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=31.50 E-value=40 Score=21.21 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=10.8
Q ss_pred CHHHHHHHhhhcCCeeEE
Q 022301 19 REREVEDLFYKYGPIAHI 36 (299)
Q Consensus 19 t~~~l~~~F~~~G~v~~i 36 (299)
|--||++++.+||.++.+
T Consensus 3 tlyDVqQLLK~fG~~IY~ 20 (62)
T PF06014_consen 3 TLYDVQQLLKKFGIIIYV 20 (62)
T ss_dssp SHHHHHHHHHTTS-----
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 345899999999976554
No 319
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=30.94 E-value=1.3e+02 Score=20.61 Aligned_cols=29 Identities=21% Similarity=0.419 Sum_probs=21.1
Q ss_pred EEcCCCCCCCHHHHHHHhhh-cC-CeeEEEe
Q 022301 10 YVGNLPGDIREREVEDLFYK-YG-PIAHIDL 38 (299)
Q Consensus 10 ~V~nLp~~~t~~~l~~~F~~-~G-~v~~i~~ 38 (299)
|+=.++..++..||++.|+. || +|..|..
T Consensus 23 ~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT 53 (92)
T PRK05738 23 YVFEVAPDATKPEIKAAVEKLFGVKVESVNT 53 (92)
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCceeEEEE
Confidence 34467889999999999986 44 4555554
No 320
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=30.48 E-value=3.6e+02 Score=24.73 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=19.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhh
Q 022301 7 RTLYVGNLPGDIREREVEDLFY 28 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~ 28 (299)
++|.|+.||+.++.+.+.+...
T Consensus 226 ~~i~ItElP~~~~~~~~~e~i~ 247 (445)
T cd00187 226 NTIEITELPYQVNKAKLKEKIA 247 (445)
T ss_pred ceEEEEeCCCcccHHHHHHHHH
Confidence 6899999999999998887654
No 321
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=29.37 E-value=5.3e+02 Score=24.93 Aligned_cols=60 Identities=12% Similarity=0.119 Sum_probs=34.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhh---hcCCeeEEEeecCCCCCceEE-EEecChHHHHHHHHhcC
Q 022301 6 SRTLYVGNLPGDIREREVEDLFY---KYGPIAHIDLKIPPRPPGYAF-VEFEEARDAEDAIRGRD 66 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~---~~G~v~~i~~~~~~~~~g~af-V~F~~~e~A~~A~~~l~ 66 (299)
.++|.|+.||..++.+.|.+... .-|.|. |.-..+....+..| |++.....+...+..|-
T Consensus 220 ~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~s~~~v~i~i~l~~~~~~~~~~~~Ly 283 (635)
T PRK09631 220 EKTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDYTAENVEIEIKLPRGVYASEVIEALY 283 (635)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeCCCCcEEEEEEECCCCCHHHHHHHHH
Confidence 46899999999999998887644 334443 22112212233444 45555555555554443
No 322
>PHA03075 glutaredoxin-like protein; Provisional
Probab=29.29 E-value=1e+02 Score=22.22 Aligned_cols=31 Identities=23% Similarity=0.361 Sum_probs=14.9
Q ss_pred HHHHhhhcCCeeEEEeecCCCCCceEEEEec
Q 022301 23 VEDLFYKYGPIAHIDLKIPPRPPGYAFVEFE 53 (299)
Q Consensus 23 l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~ 53 (299)
|-++|..+|.-.-.-++.++..+.+|||.|.
T Consensus 59 Inn~~~~lgne~v~lfKydp~t~qmA~V~i~ 89 (123)
T PHA03075 59 INNFFKHLGNEYVSLFKYDPETKQMAFVDIS 89 (123)
T ss_pred HHHHHHhhcccEEEEEEEcCCCCcEEEEehh
Confidence 4445555553222333445555556666554
No 323
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=28.89 E-value=1.6e+02 Score=19.50 Aligned_cols=50 Identities=20% Similarity=0.126 Sum_probs=25.0
Q ss_pred CCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCH-------HHHHHHHHhcCCeeEEE
Q 022301 70 FDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASW-------QDLKDHMRRAGDVCFSQ 139 (299)
Q Consensus 70 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~-------~~l~~~f~~~G~v~~~~ 139 (299)
..|+.+++.|+.... ..+.+-++.+|-|..+.+ ..|.+.|.-.|..+.+.
T Consensus 22 ~~g~~~Ki~Y~tQv~--------------------~~PPtFv~f~N~~~~~~~sY~ryL~n~lRe~f~f~G~Pi~l~ 78 (80)
T PF14714_consen 22 SKGKRLKIYYATQVG--------------------TRPPTFVLFVNDPELLPESYKRYLENQLREAFGFEGVPIRLI 78 (80)
T ss_dssp ETTCC--EEEEEEEE--------------------TTTTEEEEEES-CCC--HHHHHHHHHHHHHHH--TTS--EEE
T ss_pred CCCceeEEEEEEeCC--------------------CCCCEEEEEeCCcccCCHHHHHHHHHHHHHHCCCCceeEEEE
Confidence 478899999875322 223355666777777764 55666776666554443
No 324
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=28.75 E-value=90 Score=21.60 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=16.0
Q ss_pred EEEEEecChhhHHHHHHhc
Q 022301 148 TGIVDYTNYDDMKHAIKKL 166 (299)
Q Consensus 148 ~~fv~f~~~~~a~~a~~~l 166 (299)
|.+++|.+.+.+..|+.++
T Consensus 68 FsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 68 FSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEcCchhHHHHHHHHh
Confidence 8899999999888887764
No 325
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=28.41 E-value=1.2e+02 Score=20.80 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=32.7
Q ss_pred CCCCCCHHHHHHHHHhcCCee-EEEEEeCCCCCEEEEEecChhhHHHHHHhcC
Q 022301 116 LPSSASWQDLKDHMRRAGDVC-FSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 167 (299)
Q Consensus 116 l~~~~~~~~l~~~f~~~G~v~-~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 167 (299)
+.+.++...|...|...|.-. -..+-.|-=..+|.|+|.+.+.+..|.+.|-
T Consensus 20 ~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 20 QTPNLDNNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred cCcccChhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHH
Confidence 455566777766666655322 2222222112289999999999999988764
No 326
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=28.09 E-value=2.2e+02 Score=20.08 Aligned_cols=44 Identities=9% Similarity=0.194 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCeeEEEEEeCC-----CC----------C----EEEEEecChhhHHHHHHhc
Q 022301 123 QDLKDHMRRAGDVCFSQVFRDG-----SG----------T----TGIVDYTNYDDMKHAIKKL 166 (299)
Q Consensus 123 ~~l~~~f~~~G~v~~~~~~~~~-----~~----------~----~~fv~f~~~~~a~~a~~~l 166 (299)
+...++|..||.+..+..-.+. .+ + |.+|+|.+.+....+..++
T Consensus 23 ~~a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~ 85 (103)
T PF07237_consen 23 EKAAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKM 85 (103)
T ss_dssp HHHHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 4556899999988776554331 11 1 8999999998888877664
No 327
>PHA01632 hypothetical protein
Probab=27.98 E-value=63 Score=19.64 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=16.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhh
Q 022301 9 LYVGNLPGDIREREVEDLFYK 29 (299)
Q Consensus 9 l~V~nLp~~~t~~~l~~~F~~ 29 (299)
|.|..+|..-|+++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 345688999999999887654
No 328
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=27.71 E-value=1.4e+02 Score=23.65 Aligned_cols=63 Identities=10% Similarity=0.240 Sum_probs=42.5
Q ss_pred EEecChHHHHHHHHhcCCCCCCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCC--------C
Q 022301 50 VEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSA--------S 121 (299)
Q Consensus 50 V~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~--------~ 121 (299)
+.|.+.++|...++ -.|+.+....|++.+..+.. ......|||+-+...+ .
T Consensus 47 ~I~qs~e~ai~~lE-~e~KlWreteI~I~~g~p~V--------------------NE~TkkIYICPFTGKVF~DNt~~nP 105 (238)
T PF10915_consen 47 IIFQSAEDAIRILE-EEGKLWRETEIKIQSGKPSV--------------------NEQTKKIYICPFTGKVFGDNTHPNP 105 (238)
T ss_pred hhccCHHHHHHHHH-HhcchheeeeEEEecCCccc--------------------ccccceEEEcCCcCccccCCCCCCh
Confidence 46899999999998 78888888888887765322 2233577776543321 3
Q ss_pred HHHHHHHHHhcC
Q 022301 122 WQDLKDHMRRAG 133 (299)
Q Consensus 122 ~~~l~~~f~~~G 133 (299)
++.|-+..++|.
T Consensus 106 QDAIYDWvSkCP 117 (238)
T PF10915_consen 106 QDAIYDWVSKCP 117 (238)
T ss_pred HHHHHHHHhhCC
Confidence 566666666654
No 329
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=27.46 E-value=2.6e+02 Score=20.77 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=35.8
Q ss_pred HHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 20 EREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 20 ~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
|.+|+..|- |.-+..+.++.......+-+..+.+.. ...++..|.+..+.|++|.|....
T Consensus 2 e~~lkAa~l-~nf~~f~~WP~~~~~~~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 2 EYQLKAAYL-YNFAKFIEWPDSAPSSPFRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred HHHHHHHHH-HHhHhhccCCCCCCCCCeEEEEECChH-HHHHHHHhhhcccCCCcEEEEECC
Confidence 445554442 111233444332123446677776665 445677789999999999998763
No 330
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.31 E-value=1.6e+02 Score=18.24 Aligned_cols=47 Identities=21% Similarity=0.171 Sum_probs=27.5
Q ss_pred CHHHHHHHhhhcC-CeeEEEeecCC-CCCceEEEEecChHHHHHHHHhc
Q 022301 19 REREVEDLFYKYG-PIAHIDLKIPP-RPPGYAFVEFEEARDAEDAIRGR 65 (299)
Q Consensus 19 t~~~l~~~F~~~G-~v~~i~~~~~~-~~~g~afV~F~~~e~A~~A~~~l 65 (299)
.-.+|.++|..+| .|..+...... ...+...+.+...++...++..|
T Consensus 14 ~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L 62 (69)
T cd04909 14 VIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEIL 62 (69)
T ss_pred HHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHHHHHHHHHHH
Confidence 3457888888887 56666653321 12455667776555555555544
No 331
>PF14893 PNMA: PNMA
Probab=27.30 E-value=50 Score=28.73 Aligned_cols=24 Identities=17% Similarity=0.465 Sum_probs=20.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHh
Q 022301 108 EYRVLVTGLPSSASWQDLKDHMRR 131 (299)
Q Consensus 108 ~~~l~v~nl~~~~~~~~l~~~f~~ 131 (299)
...|.|.+||.++++++|++.+..
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHH
Confidence 357899999999999999988766
No 332
>KOG1888 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=26.13 E-value=2e+02 Score=28.30 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=38.9
Q ss_pred EEEcCC--CCCCCHHHHHHHhhhcC-CeeEEEeecCC-CCCceEEEEecChHHHHHHHHhcCCCCCCCceE
Q 022301 9 LYVGNL--PGDIREREVEDLFYKYG-PIAHIDLKIPP-RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRL 75 (299)
Q Consensus 9 l~V~nL--p~~~t~~~l~~~F~~~G-~v~~i~~~~~~-~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i 75 (299)
|+|.+- ...++..+..+||..|| +|+-+.+..++ +.+.-+ -=.++-.+||..||........|
T Consensus 312 I~l~~~DP~y~~a~lHF~~L~~RYG~PIiilNLIKt~ekr~~E~----IL~~eF~~ai~yLNqflp~e~rl 378 (868)
T KOG1888|consen 312 IVLDKRDPFYETAALHFDNLVQRYGNPIIILNLIKTNEKRPRES----ILREEFENAIDYLNQFLPPENRL 378 (868)
T ss_pred eEEeccCCccchHHHHHHHHHHhcCCcEEEEEeeccccCCchhH----HHHHHHHHHHHHHhccCCCccee
Confidence 444444 35688899999999999 67777776654 222211 12345567788777544443333
No 333
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=26.03 E-value=1.9e+02 Score=22.68 Aligned_cols=46 Identities=15% Similarity=0.087 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHhc-CCeeEEEEEeCCCC-----CEEEEEecChhhHHHHHHh
Q 022301 120 ASWQDLKDHMRRA-GDVCFSQVFRDGSG-----TTGIVDYTNYDDMKHAIKK 165 (299)
Q Consensus 120 ~~~~~l~~~f~~~-G~v~~~~~~~~~~~-----~~~fv~f~~~~~a~~a~~~ 165 (299)
.+++.|.++.... |.+..+.+-...+. |-.||+|.+.+.|...++.
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 4556666655554 47877777655433 5799999999999886653
No 334
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.01 E-value=2.9e+02 Score=20.88 Aligned_cols=53 Identities=17% Similarity=0.314 Sum_probs=37.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhh---cCCeeEEEeec------------CCCCCc-eEEEEecChHH
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYK---YGPIAHIDLKI------------PPRPPG-YAFVEFEEARD 57 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~---~G~v~~i~~~~------------~~~~~g-~afV~F~~~e~ 57 (299)
....|++..+..-+++++..+..+. -+++..|.+-. +...+. |-+|.|++-+.
T Consensus 86 d~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 86 DDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 3468999999999999998888875 35677777721 222333 88888887644
No 335
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=25.95 E-value=3.8e+02 Score=23.92 Aligned_cols=64 Identities=17% Similarity=0.210 Sum_probs=44.5
Q ss_pred CCHHHHHHHhhhcC--C-eeEEEeecCCCCCceEEEEecChHHHHHHHHhcCC----CCCCCceEEEEEcc
Q 022301 18 IREREVEDLFYKYG--P-IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG----YDFDGHRLRVELAH 81 (299)
Q Consensus 18 ~t~~~l~~~F~~~G--~-v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~----~~~~g~~i~v~~~~ 81 (299)
.+.+++..+-..+| + |....+...+..+.=+.-.-.+.++|..+...|-| +.+.|..+..-+..
T Consensus 26 ~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~~~G~~v~~vlve 96 (387)
T COG0045 26 TSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQTDIKGEPVNKVLVE 96 (387)
T ss_pred eCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcccccCcCCceeeEEEEE
Confidence 56777777777776 2 34555555566665455555789999999888888 77888876665544
No 336
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=25.88 E-value=1.4e+02 Score=16.99 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=23.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEe
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL 38 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~ 38 (299)
++.|..-+++-+++.++|.+++..+.+ ..+.+
T Consensus 6 ~a~v~~~~fSgHad~~~L~~~i~~~~p-~~vil 37 (43)
T PF07521_consen 6 RARVEQIDFSGHADREELLEFIEQLNP-RKVIL 37 (43)
T ss_dssp -SEEEESGCSSS-BHHHHHHHHHHHCS-SEEEE
T ss_pred EEEEEEEeecCCCCHHHHHHHHHhcCC-CEEEE
Confidence 355666668899999999999998866 55544
No 337
>COG5584 Predicted small secreted protein [Function unknown]
Probab=25.55 E-value=67 Score=22.15 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=20.6
Q ss_pred CCCCCCCHHHHHHHhhhcCCeeEEEee
Q 022301 13 NLPGDIREREVEDLFYKYGPIAHIDLK 39 (299)
Q Consensus 13 nLp~~~t~~~l~~~F~~~G~v~~i~~~ 39 (299)
||.....-+-+++.|.++|+|..-++.
T Consensus 29 ~is~e~alk~vk~afk~~mnI~GSwI~ 55 (103)
T COG5584 29 NISRENALKVVKEAFKQFMNIKGSWIV 55 (103)
T ss_pred ccChhHHHHHHHHHhcccCCcceeEEE
Confidence 566666667788888888888877774
No 338
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=25.44 E-value=1.1e+02 Score=21.44 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=17.7
Q ss_pred hcCCeeEEEEEeCCCCCEEEEEecCh
Q 022301 131 RAGDVCFSQVFRDGSGTTGIVDYTNY 156 (299)
Q Consensus 131 ~~G~v~~~~~~~~~~~~~~fv~f~~~ 156 (299)
+-|.+..+.....++ |+|+.|++-
T Consensus 28 ~NGtv~qI~~Y~~pN--Yvf~~FEnG 51 (121)
T PF06919_consen 28 KNGTVAQIEQYMTPN--YVFMRFENG 51 (121)
T ss_pred CCCcEEEEeeecCCC--EEEEEecCC
Confidence 457777777776554 999999864
No 339
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=25.43 E-value=81 Score=30.13 Aligned_cols=39 Identities=8% Similarity=0.203 Sum_probs=33.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP 41 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~ 41 (299)
+..+..+|+.+|..++.++.-.++|...--.+++.|...
T Consensus 298 g~~~~~~y~~G~stslp~~~Q~~~~r~ipGle~a~i~r~ 336 (618)
T PRK05192 298 GLDTNEVYPNGISTSLPEDVQLEMLRSIPGLENAEILRP 336 (618)
T ss_pred CCCCCEEeccCccCCCCHHHHHHHHhcCcCccceeEeec
Confidence 456889999999999999999999999888888888643
No 340
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=25.34 E-value=1.7e+02 Score=18.03 Aligned_cols=44 Identities=14% Similarity=0.103 Sum_probs=28.4
Q ss_pred CHHHHHHHHHhcC-CeeEEEEEeCCCCCEEEEEecChhhHHHHHH
Q 022301 121 SWQDLKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIK 164 (299)
Q Consensus 121 ~~~~l~~~f~~~G-~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~ 164 (299)
.-.+|-++|.+.| .|..+.+......+..-+.+.+.+.|.+++.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~ 58 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALK 58 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHH
Confidence 4577888888887 7777776555443444445566556666665
No 341
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=25.14 E-value=1.3e+02 Score=19.33 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHhhhcCCeeEEEe----ecCCCCCceEEEEec-ChHHHHHHHHhcCC
Q 022301 15 PGDIREREVEDLFYKYGPIAHIDL----KIPPRPPGYAFVEFE-EARDAEDAIRGRDG 67 (299)
Q Consensus 15 p~~~t~~~l~~~F~~~G~v~~i~~----~~~~~~~g~afV~F~-~~e~A~~A~~~l~~ 67 (299)
...+++..|.++...||--.+|.. ...+.+-|.-+|++. +.++.++|+..|..
T Consensus 11 g~~~~~piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~ 68 (76)
T PF09383_consen 11 GNSAQEPIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLRE 68 (76)
T ss_dssp SCSSSSCHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred CCCcCchHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHH
Confidence 345667778888888884444433 224556688888885 44556777776654
No 342
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=25.01 E-value=79 Score=26.18 Aligned_cols=24 Identities=29% Similarity=0.213 Sum_probs=20.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcC
Q 022301 8 TLYVGNLPGDIREREVEDLFYKYG 31 (299)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G 31 (299)
.+.|+|||++++.+.|..++..+|
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~ 119 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPK 119 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCC
Confidence 478999999999999999996433
No 343
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=25.00 E-value=6.8e+02 Score=24.75 Aligned_cols=57 Identities=11% Similarity=0.221 Sum_probs=33.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEEeCC--CCCEEE-EEecChhhHHHHHHh
Q 022301 109 YRVLVTGLPSSASWQDLKDHMRRA---GDVCFSQVFRDG--SGTTGI-VDYTNYDDMKHAIKK 165 (299)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~---G~v~~~~~~~~~--~~~~~f-v~f~~~~~a~~a~~~ 165 (299)
++|.|+.||+.++.+.|.+..... +.+..+.-+.|. ..|..| |++.....++..++.
T Consensus 249 ~~i~ItEiP~~~~~~~~~~~i~~l~~~~~~~~i~~~~Des~~~~vrivi~lk~~~~~~~~~~~ 311 (738)
T TIGR01061 249 NQIVITEIPYETNKANIVKKIEEIIFDNKVAGIEEVRDESDRNGIRIIIELKKDANAEKILNF 311 (738)
T ss_pred cEEEEEecCCccCHHHHHHHHHHHHhcCCccccceeeeccCCCceEEEEEECCCCCHHHHHHH
Confidence 479999999999988887765542 333333333332 224544 456555556555543
No 344
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=24.99 E-value=1.4e+02 Score=28.80 Aligned_cols=67 Identities=10% Similarity=0.153 Sum_probs=50.7
Q ss_pred eEEEcCCC--CCCCHHHHHHHhhhcCCee-----EEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 8 TLYVGNLP--GDIREREVEDLFYKYGPIA-----HIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 8 ~l~V~nLp--~~~t~~~l~~~F~~~G~v~-----~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
++|| |+- ..++..+|..++..-+.|. .|.|. ..|.||+.... .|...+..|++..+.|+.|.|+.+
T Consensus 488 ~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~-----~~~s~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 560 (629)
T PRK11634 488 LYRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF-----ASHSTIELPKG-MPGEVLQHFTRTRILNKPMNMQLL 560 (629)
T ss_pred EEEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe-----CCceEEEcChh-hHHHHHHHhccccccCCceEEEEC
Confidence 3555 663 3589999999888776554 44444 45999999654 578888889999999999999987
Q ss_pred c
Q 022301 81 H 81 (299)
Q Consensus 81 ~ 81 (299)
.
T Consensus 561 ~ 561 (629)
T PRK11634 561 G 561 (629)
T ss_pred C
Confidence 4
No 345
>PRK12758 DNA topoisomerase IV subunit A; Provisional
Probab=24.54 E-value=7.1e+02 Score=25.10 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=34.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhh---cCCeeEEEeecCCCCCceEE-EEecChHHHHHHHHhc
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYK---YGPIAHIDLKIPPRPPGYAF-VEFEEARDAEDAIRGR 65 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~---~G~v~~i~~~~~~~~~g~af-V~F~~~e~A~~A~~~l 65 (299)
+.++|.|+.||..++.+.|.+-... -|.|. |.-..+....+.-| |++....++...+..|
T Consensus 240 ~~~~ivItEiPy~~~t~~lie~I~~~~~~~ki~-I~di~D~s~~~vrivI~lk~~~~~~~~~~~L 303 (869)
T PRK12758 240 DKKTLVITEIPYGTTTSSLIDSILKANDKGKIK-IKKVEDNTAADVEILVHLAPGVSPDKTIDAL 303 (869)
T ss_pred CCCEEEEEecCCcccHHHHHHHHHHHHhcCCCc-eeeeEecCCCceEEEEEeCCCCCHHHHHHHH
Confidence 3578999999999988887665542 35554 32222211233434 4555555555555544
No 346
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=24.52 E-value=1.7e+02 Score=17.54 Aligned_cols=46 Identities=13% Similarity=0.063 Sum_probs=30.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHH
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARD 57 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~ 57 (299)
..++|.+.....+.++|.+++..+|.-..-.+. ...-+|.+.+.+.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~-----~~~thvI~~~~~~ 47 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGKVTSSVS-----KKTTHVIVGSDAG 47 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCEEecccc-----CCceEEEECCCCC
Confidence 467888887788999999999999863333322 2244555555444
No 347
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=24.42 E-value=2e+02 Score=28.86 Aligned_cols=30 Identities=20% Similarity=0.400 Sum_probs=25.7
Q ss_pred CCCCceEEEEecChHHHHHHHHhcCCCCCC
Q 022301 42 PRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (299)
Q Consensus 42 ~~~~g~afV~F~~~e~A~~A~~~l~~~~~~ 71 (299)
..-+||-||+=..+.++..||+.|-+....
T Consensus 207 D~lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 207 DHLKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred cccceeEEEEechhHHHHHHHhhhhhheec
Confidence 456899999999999999999988776655
No 348
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.02 E-value=1.8e+02 Score=17.68 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=24.4
Q ss_pred CHHHHHHHhhhcC-CeeEEEeec-CCCCCceEEEEecChHHHHHHHHhcC
Q 022301 19 REREVEDLFYKYG-PIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRD 66 (299)
Q Consensus 19 t~~~l~~~F~~~G-~v~~i~~~~-~~~~~g~afV~F~~~e~A~~A~~~l~ 66 (299)
.-.+|..+|..+| .|..+.... .+....+..|...+. +...++..|.
T Consensus 12 ~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~-~~~~~i~~l~ 60 (71)
T cd04903 12 AIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP-IDEEVIEEIK 60 (71)
T ss_pred hHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC-CCHHHHHHHH
Confidence 4567888888776 566666543 122233344455443 4334444333
No 349
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=23.87 E-value=5e+02 Score=23.80 Aligned_cols=51 Identities=16% Similarity=0.280 Sum_probs=30.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhc---CCeeEEEeecCCCCCceEEE-EecChHHHH
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKY---GPIAHIDLKIPPRPPGYAFV-EFEEARDAE 59 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~v~~i~~~~~~~~~g~afV-~F~~~e~A~ 59 (299)
.++|.|+-||..++.+.+.+..... |.|..+.= . ...+..|| ++.....+.
T Consensus 227 ~~~i~ItElP~~~~~~~~~~~i~~l~~~~~i~~i~d-s--~~~~v~i~I~lk~~~~~~ 281 (439)
T PHA02592 227 KTKLHITEIPVKYDRETYVAVLDPLEEKGKIVSYDD-C--TEDGFRFKVTLKREENEE 281 (439)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHhcCCcCCccc-C--CCCceEEEEEECCCCCHH
Confidence 4589999999999988877755533 45544433 1 22445554 444443333
No 350
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.65 E-value=1.8e+02 Score=17.53 Aligned_cols=43 Identities=12% Similarity=0.158 Sum_probs=23.5
Q ss_pred HHHHHHhhhcC-CeeEEEeecCC-CCCceEEEEecChHHHHHHHH
Q 022301 21 REVEDLFYKYG-PIAHIDLKIPP-RPPGYAFVEFEEARDAEDAIR 63 (299)
Q Consensus 21 ~~l~~~F~~~G-~v~~i~~~~~~-~~~g~afV~F~~~e~A~~A~~ 63 (299)
.+|.++|..+| .|..+...... .......+...+.+.+.+++.
T Consensus 14 ~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~ 58 (65)
T cd04882 14 HEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQ 58 (65)
T ss_pred HHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHH
Confidence 45667777776 56666553332 223334444556666666655
No 351
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=23.59 E-value=2.6e+02 Score=20.19 Aligned_cols=45 Identities=13% Similarity=0.380 Sum_probs=24.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC-CCCCceEEEEec
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFE 53 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~-~~~~g~afV~F~ 53 (299)
..||||++|.....+.|++. .+..|.++.-... ....++-++.|.
T Consensus 6 ~~l~~G~~~~~~~~~~l~~~--gi~~Vi~l~~~~~~~~~~~~~~~~ip 51 (138)
T smart00195 6 PHLYLGSYSSALNLALLKKL--GITHVINVTNEVPNLNKKGFTYLGVP 51 (138)
T ss_pred CCeEECChhHcCCHHHHHHc--CCCEEEEccCCCCCCCCCCCEEEEEE
Confidence 35999999977765444442 4445555543211 122444555544
No 352
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=23.29 E-value=1.9e+02 Score=26.02 Aligned_cols=51 Identities=22% Similarity=0.280 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHhh----hcCCeeEEEeecC--CCCCceEEEEecChHHHHHHHHhcC
Q 022301 16 GDIREREVEDLFY----KYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRD 66 (299)
Q Consensus 16 ~~~t~~~l~~~F~----~~G~v~~i~~~~~--~~~~g~afV~F~~~e~A~~A~~~l~ 66 (299)
.+...-+|..+|. .+|-|..+.|... +....+.++.|.+.++|..|+..+.
T Consensus 142 ~~~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~ 198 (413)
T TIGR00387 142 KDVAGYDLTGLFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDII 198 (413)
T ss_pred CCCCCCChhhhcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHH
Confidence 3444456778875 4788988888433 3344567889999999999986553
No 353
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=22.93 E-value=1.6e+02 Score=18.65 Aligned_cols=31 Identities=29% Similarity=0.460 Sum_probs=19.9
Q ss_pred HHHHHHhhh--cCCeeEEEeecCCCCCceE-EEEecC
Q 022301 21 REVEDLFYK--YGPIAHIDLKIPPRPPGYA-FVEFEE 54 (299)
Q Consensus 21 ~~l~~~F~~--~G~v~~i~~~~~~~~~g~a-fV~F~~ 54 (299)
++|.+.+.. .|.|...+|. ...|.+ +|+|.+
T Consensus 18 ~~l~~~l~~~~~g~I~~fKmt---DG~giG~vv~~~n 51 (64)
T PF11061_consen 18 KELVDKLGKNPIGTIKGFKMT---DGSGIGVVVEFSN 51 (64)
T ss_pred HHHHHHhccCCcEEEEEEEEe---cCCcEEEEEEecC
Confidence 455566665 8999999985 334544 456654
No 354
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=22.67 E-value=2.5e+02 Score=24.93 Aligned_cols=47 Identities=21% Similarity=0.289 Sum_probs=33.1
Q ss_pred CCHHHHHHHhhhcCCeeEEEe--------ecCCCCCceEEEEecChHHHHHHHHhcC
Q 022301 18 IREREVEDLFYKYGPIAHIDL--------KIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (299)
Q Consensus 18 ~t~~~l~~~F~~~G~v~~i~~--------~~~~~~~g~afV~F~~~e~A~~A~~~l~ 66 (299)
+|-.+++++|.+- +..|.+ ....-+.-+-||+..+.+++..||+.|.
T Consensus 3 ~~~~~~~~~~~~~--~~~i~~~~~~l~~lDq~~lP~~~~~~~~~~~~~v~~aI~~M~ 57 (363)
T PRK05772 3 LTVKEVKELFKPK--LLPIIWKDNTLTLLDQSLLPFETVYVDLKTVEEVALAIRNMQ 57 (363)
T ss_pred chHHHHHHHhCCC--CceEEecCCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCc
Confidence 5678899999753 333322 1123345688999999999999999665
No 355
>COG0090 RplB Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]
Probab=22.67 E-value=92 Score=25.98 Aligned_cols=32 Identities=6% Similarity=0.161 Sum_probs=19.2
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCe
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDV 135 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v 135 (299)
+...+++|-+.|+|..+.--.|+.....-|++
T Consensus 123 ~ik~GN~lpL~~IP~Gt~VhNVE~~pG~GGq~ 154 (275)
T COG0090 123 DIKPGNALPLGNIPEGTIVHNVELKPGDGGQL 154 (275)
T ss_pred CcCCcceeeeccCCCCceEEeeeeccCCCceE
Confidence 34466788888888876544444444444444
No 356
>PF11910 NdhO: Cyanobacterial and plant NDH-1 subunit O; InterPro: IPR020905 NAD(P)H-quinone oxidoreductase (NDH-1) shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. It couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. NDH-1 can be composed of about 15 different subunits, although different subcomplexes with different compositions have been identified which probably have different functions. This entry represents subunit O. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process, 0005886 plasma membrane
Probab=22.17 E-value=62 Score=20.46 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=16.2
Q ss_pred HhhhcCCeeEEEeecCCCCCceEEEEecC
Q 022301 26 LFYKYGPIAHIDLKIPPRPPGYAFVEFEE 54 (299)
Q Consensus 26 ~F~~~G~v~~i~~~~~~~~~g~afV~F~~ 54 (299)
+|+.=|+|..++= .||+|.|.-
T Consensus 31 ife~~GEvl~ikg-------dYa~vr~~~ 52 (67)
T PF11910_consen 31 IFEGPGEVLDIKG-------DYAQVRFRV 52 (67)
T ss_pred eecCCCeEEEecC-------CEEEEEecC
Confidence 5777788877752 399999953
No 357
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=22.16 E-value=46 Score=20.44 Aligned_cols=37 Identities=27% Similarity=0.492 Sum_probs=19.6
Q ss_pred CCceEEEEecC-hHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 44 PPGYAFVEFEE-ARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 44 ~~g~afV~F~~-~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
.+|||||...+ .++.--.-..|++. +.|-.+.|....
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A-~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGA-MDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS--TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCC-CCCCEEEEEEec
Confidence 47899999987 44443344445544 345555555543
No 358
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=21.79 E-value=2e+02 Score=22.64 Aligned_cols=57 Identities=18% Similarity=0.302 Sum_probs=37.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhhcCC-eeEEEeecC-CCCCceEEEEecChHHHHHHHHhc
Q 022301 9 LYVGNLPGDIREREVEDLFYKYGP-IAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGR 65 (299)
Q Consensus 9 l~V~nLp~~~t~~~l~~~F~~~G~-v~~i~~~~~-~~~~g~afV~F~~~e~A~~A~~~l 65 (299)
=||+|.+.-.+-..|.+.|...|- |.-|.=+.. ..+.+.-+|.|.+.++...++..+
T Consensus 21 R~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~ 79 (185)
T PF04127_consen 21 RFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKEL 79 (185)
T ss_dssp EEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHH
T ss_pred eEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccccccceEEEecchhhhhhhhccc
Confidence 378888888888899999988884 333322322 124578999999999999888764
No 359
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=21.75 E-value=1.1e+02 Score=25.78 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=18.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhh
Q 022301 8 TLYVGNLPGDIREREVEDLFYK 29 (299)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~ 29 (299)
.+.|+|||++++..-|..++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 5779999999998888888754
No 360
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=21.74 E-value=86 Score=30.71 Aligned_cols=17 Identities=6% Similarity=0.118 Sum_probs=9.3
Q ss_pred CCceEEEEecChHHHHH
Q 022301 44 PPGYAFVEFEEARDAED 60 (299)
Q Consensus 44 ~~g~afV~F~~~e~A~~ 60 (299)
+..|+.+.+...+.+..
T Consensus 58 ~~~y~~t~~~~~qq~a~ 74 (1194)
T KOG4246|consen 58 GSVYGSTSLSSSQQLAT 74 (1194)
T ss_pred cccccccchhhhhhhHH
Confidence 34566666665544433
No 361
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=21.65 E-value=1e+02 Score=26.32 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=18.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhh
Q 022301 8 TLYVGNLPGDIREREVEDLFYK 29 (299)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~ 29 (299)
.+.|.|||++++...|..++..
T Consensus 103 d~VvaNlPY~Istpil~~ll~~ 124 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAH 124 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhc
Confidence 4678999999999999888854
No 362
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=21.17 E-value=46 Score=20.83 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=18.2
Q ss_pred CCCCCCCHHHHHHHhhhcCCeeEE
Q 022301 13 NLPGDIREREVEDLFYKYGPIAHI 36 (299)
Q Consensus 13 nLp~~~t~~~l~~~F~~~G~v~~i 36 (299)
.|...+|+++|.+....++++...
T Consensus 5 Dls~~lTeEEl~~~i~~L~~~~~~ 28 (61)
T TIGR01639 5 DLSKKLSKEELNELINSLDEIPNR 28 (61)
T ss_pred HHhHHccHHHHHHHHHhhcCCCCH
Confidence 466778999999998888766443
No 363
>COG1160 Predicted GTPases [General function prediction only]
Probab=20.97 E-value=5.1e+02 Score=23.72 Aligned_cols=60 Identities=15% Similarity=0.116 Sum_probs=37.0
Q ss_pred cCCCCC-CCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCC-------HHHHHHHHHhcCCee
Q 022301 65 RDGYDF-DGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSAS-------WQDLKDHMRRAGDVC 136 (299)
Q Consensus 65 l~~~~~-~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~-------~~~l~~~f~~~G~v~ 136 (299)
+|.-.+ .|+.+++.|+..... .+..-+..+|-|..+. +..|++.|...|...
T Consensus 372 ~~pP~~~~G~r~ki~Ya~q~~~--------------------~PP~fvlf~N~~~~~~~sY~RyL~n~~R~~f~~~g~Pi 431 (444)
T COG1160 372 KHPPPVRYGRRLKIKYATQVST--------------------NPPTFVLFGNRPKALHFSYKRYLENRLRKAFGFEGTPI 431 (444)
T ss_pred hCCCCccCCceEEEEEEecCCC--------------------CCCEEEEEecchhhCchHHHHHHHHHHHHHcCCCCCcE
Confidence 443333 489999999864332 2334555666555554 466777777788777
Q ss_pred EEEEEeCC
Q 022301 137 FSQVFRDG 144 (299)
Q Consensus 137 ~~~~~~~~ 144 (299)
.+.+....
T Consensus 432 ~l~~k~~~ 439 (444)
T COG1160 432 RLEFKKKK 439 (444)
T ss_pred EEEEecCC
Confidence 76665443
No 364
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=20.89 E-value=1.6e+02 Score=20.24 Aligned_cols=25 Identities=44% Similarity=0.660 Sum_probs=19.1
Q ss_pred CCceEEEEecChHHHHHHHHhcCCC
Q 022301 44 PPGYAFVEFEEARDAEDAIRGRDGY 68 (299)
Q Consensus 44 ~~g~afV~F~~~e~A~~A~~~l~~~ 68 (299)
..||.||++.-.+++..++..+.|.
T Consensus 58 fpGYvFv~~~~~~~~~~~i~~~~~v 82 (106)
T smart00738 58 FPGYIFVEADLEDEVWTAIRGTPGV 82 (106)
T ss_pred CCCEEEEEEEeCCcHHHHHhcCCCc
Confidence 3499999998777777778766663
No 365
>PRK15464 cold shock-like protein CspH; Provisional
Probab=20.77 E-value=69 Score=20.70 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=8.4
Q ss_pred CCceEEEEecC
Q 022301 44 PPGYAFVEFEE 54 (299)
Q Consensus 44 ~~g~afV~F~~ 54 (299)
.+||+||+=.+
T Consensus 15 ~KGfGFI~~~~ 25 (70)
T PRK15464 15 KSGKGFIIPSD 25 (70)
T ss_pred CCCeEEEccCC
Confidence 38999997654
No 366
>PLN02286 arginine-tRNA ligase
Probab=20.64 E-value=7.4e+02 Score=23.59 Aligned_cols=52 Identities=17% Similarity=0.091 Sum_probs=36.6
Q ss_pred CCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEeCCC
Q 022301 71 DGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGS 145 (299)
Q Consensus 71 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~~~~~~~ 145 (299)
.++.|.|+|+.+... ..++|+.+-..+=-+-|..++..+| .|.....+.|..
T Consensus 115 ~~~~v~VEfsSpNp~-----------------------kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G 167 (576)
T PLN02286 115 PVKRAVVDFSSPNIA-----------------------KEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWG 167 (576)
T ss_pred CCceEEEEecCCCCC-----------------------CCCccccccchhhHHHHHHHHHHcCCceEEEEeecchH
Confidence 346899999865543 4567777777777778888888888 566666666543
No 367
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=20.33 E-value=4.2e+02 Score=20.63 Aligned_cols=78 Identities=15% Similarity=0.176 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCCCCCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCe
Q 022301 56 RDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDV 135 (299)
Q Consensus 56 e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v 135 (299)
+.|..|++ .-...+.|+.|....- -|..++-++|-++..+.-.-
T Consensus 10 ~~A~ravE-~aa~~iGgRCIS~S~G-----------------------------------NPT~lsG~elV~lIk~a~~D 53 (180)
T PF14097_consen 10 EYAKRAVE-IAAKNIGGRCISQSAG-----------------------------------NPTPLSGEELVELIKQAPHD 53 (180)
T ss_pred HHHHHHHH-HHHHHhCcEEEeccCC-----------------------------------CCCcCCHHHHHHHHHhCCCC
Confidence 56777777 4556778888776432 25567888888887775433
Q ss_pred eEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecC
Q 022301 136 CFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (299)
Q Consensus 136 ~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g 173 (299)
--+-++.| .++.-+..-|.|..-+..-...++-|
T Consensus 54 PV~VMfDD----~G~~g~G~GE~Al~~v~~h~~IeVLG 87 (180)
T PF14097_consen 54 PVLVMFDD----KGFIGEGPGEQALEYVANHPDIEVLG 87 (180)
T ss_pred CEEEEEeC----CCCCCCCccHHHHHHHHcCCCceEEE
Confidence 22333333 23344444566666665555555555
No 368
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=20.22 E-value=2.7e+02 Score=18.91 Aligned_cols=52 Identities=19% Similarity=0.246 Sum_probs=34.4
Q ss_pred EEcCCCCCCCHHHHHHHhh-hcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHh
Q 022301 10 YVGNLPGDIREREVEDLFY-KYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG 64 (299)
Q Consensus 10 ~V~nLp~~~t~~~l~~~F~-~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~ 64 (299)
.+--||++++-++|.+-.. .||--..+.|.+-.. | -+|...+.++-+.|+..
T Consensus 14 ~~i~v~~~i~f~dL~~kIrdkf~~~~~~~iKykDE--G-D~iti~sq~DLd~Ai~~ 66 (86)
T cd06408 14 RYIMIGPDTGFADFEDKIRDKFGFKRRLKIKMKDD--G-DMITMGDQDDLDMAIDT 66 (86)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCCceEEEEEcC--C-CCccccCHHHHHHHHHH
Confidence 3447899999888765444 455335555533222 2 48889999999998874
No 369
>PRK12450 foldase protein PrsA; Reviewed
Probab=20.16 E-value=2e+02 Score=24.71 Aligned_cols=39 Identities=21% Similarity=0.468 Sum_probs=29.8
Q ss_pred CCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcC
Q 022301 17 DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (299)
Q Consensus 17 ~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~ 66 (299)
.+|+++|+++|..|.+ .+. ...|.+.+.+.|..++..|.
T Consensus 132 ~Vtd~evk~~y~~~~~--~~~---------~~~I~~~~~~~A~~i~~~l~ 170 (309)
T PRK12450 132 TISKKDYRQAYDAYTP--TMT---------AEIMQFEKEEDAKAALEAVK 170 (309)
T ss_pred CCCHHHHHHHHHHhCc--cce---------eEEEEeCCHHHHHHHHHHHH
Confidence 4899999999998742 111 23578889999999999885
No 370
>PRK09630 DNA topoisomerase IV subunit A; Provisional
Probab=20.02 E-value=7e+02 Score=23.05 Aligned_cols=61 Identities=16% Similarity=0.046 Sum_probs=35.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhh---hcCCeeEEEeecCCCCCceE-EEEecChHHHHHHHHhcC
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFY---KYGPIAHIDLKIPPRPPGYA-FVEFEEARDAEDAIRGRD 66 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~---~~G~v~~i~~~~~~~~~g~a-fV~F~~~e~A~~A~~~l~ 66 (299)
+.++|.|+.||..++.+.|.+... .-|.|. |.=..+....+.. .|++.....++..+..|-
T Consensus 219 ~~~~ivItEIPy~~~t~~lie~I~~l~~~gki~-I~~i~D~s~~~v~i~I~Lk~~~~~~~vl~~Ly 283 (479)
T PRK09630 219 NDKTLLIKEICPSTTTETLIRSIENAAKRGIIK-IDSIQDFSTDLPHIEIKLPKGIYAKDLLRPLF 283 (479)
T ss_pred cCCEEEEEeCCCcccHHHHHHHHHHHHhcCCCc-cceeeccCCCCceEEEEECCCCCHHHHHHHHH
Confidence 346899999999999998887654 235553 1111111112233 455665556666555443
Done!