Query 022301
Match_columns 299
No_of_seqs 321 out of 2923
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 03:15:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022301.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022301hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 6.6E-35 2.2E-39 236.2 15.8 157 3-176 12-173 (213)
2 3tyt_A Heterogeneous nuclear r 100.0 2E-33 6.9E-38 225.3 19.3 172 4-177 2-196 (205)
3 3md3_A Nuclear and cytoplasmic 100.0 3.1E-33 1E-37 217.6 19.2 153 7-176 1-159 (166)
4 1fxl_A Paraneoplastic encephal 100.0 6.4E-33 2.2E-37 216.0 19.5 154 5-177 1-161 (167)
5 1b7f_A Protein (SXL-lethal pro 100.0 1.3E-32 4.5E-37 214.5 20.0 150 5-173 2-158 (168)
6 3pgw_A U1-A; protein-RNA compl 100.0 5.4E-32 1.8E-36 228.6 24.1 173 3-176 6-275 (282)
7 1l3k_A Heterogeneous nuclear r 100.0 1.8E-32 6E-37 219.2 18.6 158 4-176 11-175 (196)
8 2adc_A Polypyrimidine tract-bi 100.0 8.8E-32 3E-36 220.3 21.1 171 3-176 31-220 (229)
9 2yh0_A Splicing factor U2AF 65 100.0 2.6E-31 8.7E-36 212.8 23.0 176 4-187 2-193 (198)
10 2qfj_A FBP-interacting repress 100.0 1.3E-31 4.6E-36 217.3 21.3 164 5-176 27-197 (216)
11 1qm9_A Polypyrimidine tract-bi 100.0 2.4E-31 8.3E-36 213.0 20.5 170 5-177 2-190 (198)
12 2g4b_A Splicing factor U2AF 65 100.0 2.3E-31 7.9E-36 208.2 19.2 150 4-176 2-166 (172)
13 3nmr_A Cugbp ELAV-like family 100.0 2E-31 6.8E-36 209.1 18.7 151 5-173 2-163 (175)
14 1fje_B Nucleolin RBD12, protei 100.0 1.2E-32 4.1E-37 216.3 11.0 160 3-185 10-171 (175)
15 2cjk_A Nuclear polyadenylated 100.0 7.3E-32 2.5E-36 210.1 11.7 151 4-176 1-158 (167)
16 2ghp_A U4/U6 snRNA-associated 100.0 4.1E-30 1.4E-34 218.2 17.6 165 5-186 116-289 (292)
17 3smz_A Protein raver-1, ribonu 100.0 2.3E-29 7.8E-34 212.7 20.0 144 4-176 20-167 (284)
18 3smz_A Protein raver-1, ribonu 100.0 2E-29 6.7E-34 213.1 18.9 157 4-176 93-256 (284)
19 3sde_A Paraspeckle component 1 100.0 1.5E-29 5.1E-34 211.0 17.6 140 4-171 20-162 (261)
20 2ghp_A U4/U6 snRNA-associated 100.0 1.8E-29 6E-34 214.2 17.3 146 4-176 39-189 (292)
21 3pgw_S U1-70K; protein-RNA com 99.9 4.2E-25 1.4E-29 195.7 13.9 161 13-180 4-178 (437)
22 3pgw_S U1-70K; protein-RNA com 99.9 1.9E-23 6.6E-28 185.1 20.1 81 4-84 100-183 (437)
23 4f25_A Polyadenylate-binding p 99.9 2.6E-24 9E-29 156.3 8.9 109 5-124 4-113 (115)
24 3lqv_A PRE-mRNA branch site pr 99.9 1.4E-22 4.8E-27 147.4 8.5 106 2-134 4-109 (115)
25 4fxv_A ELAV-like protein 1; RN 99.9 5.6E-22 1.9E-26 139.8 9.0 78 5-82 18-98 (99)
26 2hvz_A Splicing factor, argini 99.9 1.9E-21 6.4E-26 138.0 9.5 100 7-117 1-100 (101)
27 2wbr_A GW182, gawky, LD47780P; 99.9 2.9E-21 9.8E-26 129.5 9.4 74 4-80 5-78 (89)
28 2i2y_A Fusion protein consists 99.8 5.8E-21 2E-25 145.5 11.5 130 42-176 10-140 (150)
29 2fy1_A RNA-binding motif prote 99.8 2.1E-20 7.3E-25 135.7 13.9 85 1-85 2-88 (116)
30 1x4a_A Splicing factor, argini 99.8 8E-21 2.7E-25 136.7 11.4 83 2-84 18-100 (109)
31 1sjq_A Polypyrimidine tract-bi 99.8 3.7E-21 1.3E-25 135.3 9.2 81 2-85 12-94 (105)
32 2kn4_A Immunoglobulin G-bindin 99.8 2.7E-20 9.2E-25 143.1 14.6 136 43-188 11-150 (158)
33 2lxi_A RNA-binding protein 10; 99.8 2.4E-21 8.1E-26 134.4 7.3 79 6-84 1-84 (91)
34 3r27_A HnRNP L, heterogeneous 99.8 9.3E-21 3.2E-25 131.9 10.2 78 3-83 18-97 (100)
35 3s8s_A Histone-lysine N-methyl 99.8 7.4E-21 2.5E-25 136.6 9.3 80 3-82 3-85 (110)
36 1whw_A Hypothetical protein ri 99.8 3.1E-20 1.1E-24 131.2 12.4 83 3-85 5-90 (99)
37 2dnz_A Probable RNA-binding pr 99.8 4.7E-20 1.6E-24 129.2 13.0 83 3-85 2-87 (95)
38 2a3j_A U1 small nuclear ribonu 99.8 1.9E-20 6.6E-25 137.4 11.1 82 3-84 26-111 (127)
39 2ad9_A Polypyrimidine tract-bi 99.8 2.3E-20 7.8E-25 134.6 10.4 81 3-86 28-110 (119)
40 2dnm_A SRP46 splicing factor; 99.8 3.2E-20 1.1E-24 132.1 11.1 82 4-85 11-95 (103)
41 2lkz_A RNA-binding protein 5; 99.8 7.3E-21 2.5E-25 132.5 7.4 79 4-82 7-94 (95)
42 2cpf_A RNA binding motif prote 99.8 1.9E-20 6.4E-25 132.1 9.5 83 3-85 2-90 (98)
43 2x1f_A MRNA 3'-END-processing 99.8 2.6E-20 8.9E-25 130.8 10.1 80 5-84 1-83 (96)
44 2cqi_A Nucleolysin TIAR; RNA r 99.8 6.3E-20 2.2E-24 130.6 12.1 83 3-85 12-95 (103)
45 2dgs_A DAZ-associated protein 99.8 8.1E-20 2.8E-24 129.0 12.6 82 3-85 7-91 (99)
46 1x5s_A Cold-inducible RNA-bind 99.8 5.2E-20 1.8E-24 130.8 11.6 83 3-85 9-94 (102)
47 2cq1_A PTB-like protein L; RRM 99.8 5.1E-20 1.7E-24 129.7 11.3 80 3-85 12-93 (101)
48 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.8E-20 9.6E-25 132.2 10.1 83 3-85 9-94 (102)
49 2d9p_A Polyadenylate-binding p 99.8 4E-20 1.4E-24 131.6 10.8 84 2-85 11-95 (103)
50 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.3E-20 7.9E-25 128.0 9.2 79 3-81 4-85 (85)
51 2dgv_A HnRNP M, heterogeneous 99.8 3.4E-20 1.2E-24 129.2 10.1 84 2-85 4-88 (92)
52 2dgx_A KIAA0430 protein; RRM d 99.8 3.5E-20 1.2E-24 130.1 10.2 81 4-84 7-91 (96)
53 1x5u_A Splicing factor 3B subu 99.8 7.3E-20 2.5E-24 130.7 12.0 83 3-85 12-97 (105)
54 1x4d_A Matrin 3; structural ge 99.8 1.8E-20 6E-25 131.9 8.5 79 3-84 12-93 (102)
55 1x5t_A Splicing factor 3B subu 99.8 4.4E-20 1.5E-24 129.6 10.2 83 3-85 2-88 (96)
56 2e5h_A Zinc finger CCHC-type a 99.8 4.6E-20 1.6E-24 129.0 10.1 78 4-81 14-94 (94)
57 1nu4_A U1A RNA binding domain; 99.8 1.3E-20 4.4E-25 132.7 7.1 84 1-84 3-90 (97)
58 1wex_A Hypothetical protein (r 99.8 9E-20 3.1E-24 129.2 11.4 80 3-85 12-93 (104)
59 2cph_A RNA binding motif prote 99.8 1.3E-19 4.3E-24 130.0 12.3 83 3-85 12-99 (107)
60 2cq3_A RNA-binding protein 9; 99.8 1.3E-19 4.5E-24 128.9 12.3 83 3-85 12-95 (103)
61 2do4_A Squamous cell carcinoma 99.8 6E-20 2E-24 130.0 10.4 82 3-84 14-97 (100)
62 2dgo_A Cytotoxic granule-assoc 99.8 1.1E-19 3.8E-24 132.0 12.0 84 3-86 12-98 (115)
63 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.9E-20 9.9E-25 128.1 8.3 80 3-82 3-85 (87)
64 3md1_A Nuclear and cytoplasmic 99.8 4.7E-20 1.6E-24 125.9 9.3 78 6-83 1-81 (83)
65 2dnq_A RNA-binding protein 4B; 99.8 1.3E-19 4.5E-24 125.6 11.6 78 3-85 5-82 (90)
66 2div_A TRNA selenocysteine ass 99.8 4E-20 1.4E-24 130.6 9.0 83 2-84 5-95 (99)
67 1wi8_A EIF-4B, eukaryotic tran 99.8 8.8E-20 3E-24 130.0 10.7 82 2-85 11-96 (104)
68 2dgp_A Bruno-like 4, RNA bindi 99.8 1.3E-19 4.6E-24 129.6 11.7 83 3-85 10-98 (106)
69 2dgu_A Heterogeneous nuclear r 99.8 1.7E-19 5.8E-24 128.3 12.1 79 4-87 9-87 (103)
70 2cq0_A Eukaryotic translation 99.8 4.1E-20 1.4E-24 131.6 8.8 83 3-85 12-97 (103)
71 4a8x_A RNA-binding protein wit 99.8 6.5E-20 2.2E-24 126.6 9.5 80 4-83 2-85 (88)
72 1p27_B RNA-binding protein 8A; 99.8 4.7E-20 1.6E-24 132.0 9.0 80 4-83 21-103 (106)
73 2dnh_A Bruno-like 5, RNA bindi 99.8 9.8E-20 3.3E-24 130.1 10.7 82 4-85 13-99 (105)
74 2do0_A HnRNP M, heterogeneous 99.8 1.9E-19 6.4E-24 130.6 12.1 83 3-85 12-96 (114)
75 1x4c_A Splicing factor, argini 99.8 2.1E-19 7.2E-24 128.9 12.1 78 4-85 13-95 (108)
76 2cpz_A CUG triplet repeat RNA- 99.8 7.6E-20 2.6E-24 132.8 9.8 82 4-85 23-107 (115)
77 1x4f_A Matrin 3; structural ge 99.8 8.4E-20 2.9E-24 130.2 9.7 80 3-85 22-104 (112)
78 2dgt_A RNA-binding protein 30; 99.8 1.8E-19 6.1E-24 125.4 11.1 78 3-85 7-84 (92)
79 1why_A Hypothetical protein ri 99.8 1.7E-19 5.9E-24 126.8 11.1 79 3-84 14-94 (97)
80 1x4h_A RNA-binding protein 28; 99.8 2.1E-19 7.2E-24 129.7 11.7 81 4-84 13-102 (111)
81 2cqc_A Arginine/serine-rich sp 99.8 5.1E-20 1.8E-24 129.0 8.2 80 3-82 12-94 (95)
82 2ywk_A Putative RNA-binding pr 99.8 5.6E-20 1.9E-24 128.9 8.4 80 3-82 13-94 (95)
83 2kxn_B Transformer-2 protein h 99.8 7.9E-20 2.7E-24 135.1 9.2 82 3-84 43-127 (129)
84 2cqd_A RNA-binding region cont 99.8 4E-19 1.4E-23 129.2 12.9 82 3-85 14-98 (116)
85 2dnp_A RNA-binding protein 14; 99.8 1.8E-19 6.1E-24 124.9 10.3 77 3-84 6-82 (90)
86 2jvr_A Nucleolar protein 3; RN 99.8 9E-20 3.1E-24 130.5 9.0 78 4-82 26-104 (111)
87 1s79_A Lupus LA protein; RRM, 99.8 9.9E-20 3.4E-24 129.0 9.0 78 4-82 9-88 (103)
88 2jrs_A RNA-binding protein 39; 99.8 1.3E-19 4.3E-24 129.9 9.2 81 3-83 23-106 (108)
89 2cpj_A Non-POU domain-containi 99.8 3.1E-19 1.1E-23 126.0 11.0 78 4-84 13-90 (99)
90 1whx_A Hypothetical protein ri 99.8 1.4E-19 4.9E-24 130.3 9.4 78 4-84 8-85 (111)
91 3ulh_A THO complex subunit 4; 99.8 1.3E-19 4.4E-24 129.9 9.1 78 4-81 27-106 (107)
92 3ex7_B RNA-binding protein 8A; 99.8 1.6E-19 5.5E-24 133.3 9.9 82 4-85 20-104 (126)
93 2dhg_A TRNA selenocysteine ass 99.8 2.3E-19 7.7E-24 127.9 10.3 82 3-84 6-91 (104)
94 2la6_A RNA-binding protein FUS 99.8 1.5E-19 5.2E-24 127.6 9.3 79 3-81 10-99 (99)
95 1x4g_A Nucleolysin TIAR; struc 99.8 3.1E-19 1.1E-23 128.3 11.0 80 3-85 22-101 (109)
96 1oo0_B CG8781-PA, drosophila Y 99.8 1.3E-19 4.4E-24 130.6 9.0 81 4-84 24-107 (110)
97 3p5t_L Cleavage and polyadenyl 99.8 2.5E-20 8.6E-25 129.2 5.0 78 7-84 2-84 (90)
98 2err_A Ataxin-2-binding protei 99.8 1.6E-19 5.6E-24 129.6 9.3 81 3-83 26-107 (109)
99 2dng_A Eukaryotic translation 99.8 2.4E-19 8.3E-24 127.5 10.0 82 2-85 11-95 (103)
100 2khc_A Testis-specific RNP-typ 99.8 1.3E-19 4.4E-24 132.3 8.7 79 3-81 37-118 (118)
101 2cpe_A RNA-binding protein EWS 99.8 2.6E-19 8.8E-24 129.6 10.2 83 3-85 12-105 (113)
102 3ns6_A Eukaryotic translation 99.8 5.8E-20 2E-24 129.8 6.6 78 4-81 4-91 (100)
103 2cpx_A Hypothetical protein FL 99.8 2.9E-19 1E-23 129.8 10.3 81 4-85 23-107 (115)
104 2cpi_A CCR4-NOT transcription 99.8 9E-20 3.1E-24 131.5 7.4 81 4-84 13-102 (111)
105 3ucg_A Polyadenylate-binding p 99.8 3.1E-19 1.1E-23 123.4 9.8 78 5-83 5-85 (89)
106 2xnq_A Nuclear polyadenylated 99.8 3.6E-19 1.2E-23 125.0 10.2 75 3-82 19-94 (97)
107 2cq2_A Hypothetical protein LO 99.8 2.7E-19 9.1E-24 127.6 9.5 80 2-84 21-107 (114)
108 2kvi_A Nuclear polyadenylated 99.8 2.2E-19 7.4E-24 126.0 8.9 78 3-85 7-85 (96)
109 2dis_A Unnamed protein product 99.8 7.8E-19 2.7E-23 126.2 12.0 83 3-85 5-94 (109)
110 2ytc_A PRE-mRNA-splicing facto 99.8 2.1E-19 7.2E-24 123.2 8.5 76 3-81 9-85 (85)
111 2kt5_A RNA and export factor-b 99.8 6.9E-19 2.3E-23 129.5 11.8 82 4-85 33-116 (124)
112 2krb_A Eukaryotic translation 99.8 1.2E-19 4.1E-24 123.2 7.1 72 6-77 1-80 (81)
113 2fc9_A NCL protein; structure 99.8 3E-19 1E-23 126.6 9.3 81 3-84 12-92 (101)
114 2nlw_A Eukaryotic translation 99.8 2.8E-19 9.6E-24 127.5 9.2 79 4-82 13-99 (105)
115 2jvo_A Nucleolar protein 3; nu 99.8 3.1E-19 1.1E-23 127.8 9.3 77 3-84 28-104 (108)
116 3s7r_A Heterogeneous nuclear r 99.8 3E-19 1E-23 122.9 8.9 77 3-80 8-87 (87)
117 1u6f_A Tcubp1, RNA-binding pro 99.8 6.8E-19 2.3E-23 132.3 11.2 82 4-85 40-124 (139)
118 2cpd_A Apobec-1 stimulating pr 99.8 9.8E-19 3.4E-23 123.4 11.4 76 4-84 13-90 (99)
119 2e5j_A Methenyltetrahydrofolat 99.8 4.3E-19 1.5E-23 124.8 9.4 79 4-84 17-95 (97)
120 2rs2_A Musashi-1, RNA-binding 99.8 6.5E-19 2.2E-23 126.4 10.2 81 3-84 22-105 (109)
121 1x4e_A RNA binding motif, sing 99.8 6.5E-20 2.2E-24 125.7 4.6 78 3-80 2-82 (85)
122 2cqh_A IGF-II mRNA-binding pro 99.8 3.6E-19 1.2E-23 124.2 8.3 79 2-84 4-84 (93)
123 2lea_A Serine/arginine-rich sp 99.8 3.4E-19 1.2E-23 132.9 8.5 82 4-85 45-129 (135)
124 2dh8_A DAZ-associated protein 99.8 3E-19 1E-23 127.5 7.8 82 3-85 13-97 (105)
125 2la4_A Nuclear and cytoplasmic 99.8 3.2E-19 1.1E-23 126.4 7.9 76 4-82 25-100 (101)
126 2diu_A KIAA0430 protein; struc 99.8 1.4E-18 4.7E-23 117.6 10.4 75 4-85 6-86 (96)
127 2mss_A Protein (musashi1); RNA 99.8 3.5E-19 1.2E-23 119.0 7.4 72 8-80 1-75 (75)
128 1p1t_A Cleavage stimulation fa 99.8 3.7E-19 1.3E-23 126.8 8.0 81 4-84 6-89 (104)
129 3n9u_C Cleavage and polyadenyl 99.8 4.1E-19 1.4E-23 135.5 8.7 77 5-81 54-135 (156)
130 2m2b_A RNA-binding protein 10; 99.8 5.1E-19 1.7E-23 131.4 9.0 81 3-84 20-109 (131)
131 2cqp_A RNA-binding protein 12; 99.8 1.8E-19 6.3E-24 127.0 6.2 79 4-82 13-94 (98)
132 1h2v_Z 20 kDa nuclear CAP bind 99.8 7.3E-19 2.5E-23 134.7 10.0 82 4-85 37-121 (156)
133 2ek1_A RNA-binding protein 12; 99.8 1.3E-19 4.5E-24 126.9 5.3 78 4-81 13-93 (95)
134 2j76_E EIF-4B, EIF4B, eukaryot 99.8 3.9E-19 1.3E-23 125.7 7.5 78 4-83 17-98 (100)
135 2cq4_A RNA binding motif prote 99.8 6.5E-19 2.2E-23 127.7 8.8 77 5-82 24-103 (114)
136 1wf1_A RNA-binding protein RAL 99.8 1E-18 3.5E-23 125.8 9.7 75 5-84 26-101 (110)
137 1wg5_A Heterogeneous nuclear r 99.8 2E-18 6.7E-23 122.9 10.9 80 4-84 13-95 (104)
138 1uaw_A Mouse-musashi-1; RNP-ty 99.8 4E-19 1.4E-23 119.4 6.9 73 7-80 1-76 (77)
139 1fjc_A Nucleolin RBD2, protein 99.8 2.5E-19 8.5E-24 125.8 5.9 79 4-84 14-92 (96)
140 2fc8_A NCL protein; structure 99.8 8.5E-19 2.9E-23 124.4 8.7 82 3-84 12-93 (102)
141 2ki2_A SS-DNA binding protein 99.8 2E-19 7E-24 124.6 5.3 77 7-84 2-81 (90)
142 2dgw_A Probable RNA-binding pr 99.8 1.3E-18 4.4E-23 120.8 9.3 79 3-83 7-87 (91)
143 2kn4_A Immunoglobulin G-bindin 99.8 2E-18 6.9E-23 132.6 11.3 82 4-85 68-152 (158)
144 2cqg_A TDP-43, TAR DNA-binding 99.8 2E-18 6.7E-23 122.8 10.4 81 3-85 12-95 (103)
145 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.3E-18 4.5E-23 130.9 9.6 78 3-80 60-140 (140)
146 1rk8_A CG8781-PA, CG8781-PA pr 99.8 7.2E-19 2.5E-23 135.9 8.3 81 4-84 70-153 (165)
147 3beg_B Splicing factor, argini 99.8 8.2E-19 2.8E-23 127.2 8.0 75 4-82 14-93 (115)
148 1x5o_A RNA binding motif, sing 99.8 1.5E-18 5.3E-23 125.7 9.4 79 4-82 23-111 (114)
149 2cpy_A RNA-binding protein 12; 99.8 7.8E-19 2.7E-23 127.2 7.5 79 3-82 12-93 (114)
150 3egn_A RNA-binding protein 40; 99.8 5.5E-19 1.9E-23 133.4 6.9 82 3-84 42-131 (143)
151 1wg1_A KIAA1579 protein, homol 99.8 9E-19 3.1E-23 120.7 7.4 78 3-84 2-79 (88)
152 3beg_B Splicing factor, argini 99.8 5.1E-19 1.8E-23 128.2 6.4 79 105-186 13-92 (115)
153 2e44_A Insulin-like growth fac 99.8 3.1E-18 1.1E-22 120.1 10.1 79 4-83 13-92 (96)
154 2i2y_A Fusion protein consists 99.8 2.1E-18 7E-23 131.3 9.8 78 4-83 71-148 (150)
155 1x4b_A Heterogeneous nuclear r 99.8 2.7E-18 9.3E-23 124.8 10.0 80 5-85 26-108 (116)
156 2f3j_A RNA and export factor b 99.8 2.5E-18 8.7E-23 134.0 10.4 80 4-83 86-167 (177)
157 1wez_A HnRNP H', FTP-3, hetero 99.8 1.6E-18 5.4E-23 122.7 8.3 80 3-84 12-93 (102)
158 2jwn_A Embryonic polyadenylate 99.8 2.2E-18 7.7E-23 126.8 9.4 79 5-84 35-116 (124)
159 1iqt_A AUF1, heterogeneous nuc 99.8 9.4E-19 3.2E-23 116.9 6.6 72 8-80 1-75 (75)
160 1x5p_A Negative elongation fac 99.8 6.9E-18 2.4E-22 118.5 11.3 76 4-84 13-88 (97)
161 1fj7_A Nucleolin RBD1, protein 99.8 3.7E-19 1.3E-23 126.1 4.8 80 4-84 15-96 (101)
162 1x4c_A Splicing factor, argini 99.8 2.1E-17 7.2E-22 118.4 13.9 82 103-187 10-92 (108)
163 2db1_A Heterogeneous nuclear r 99.8 9.6E-19 3.3E-23 127.4 6.6 77 4-81 15-96 (118)
164 2hgl_A HNRPF protein, heteroge 99.8 2E-18 6.8E-23 128.2 8.4 77 4-81 42-123 (136)
165 2e5g_A U6 snRNA-specific termi 99.8 3.9E-18 1.3E-22 119.1 9.4 78 4-84 6-83 (94)
166 1wel_A RNA-binding protein 12; 99.8 1.9E-18 6.5E-23 127.1 7.7 77 4-81 23-102 (124)
167 1sjr_A Polypyrimidine tract-bi 99.7 1.4E-17 4.7E-22 126.1 11.8 77 7-84 47-125 (164)
168 2lmi_A GRSF-1, G-rich sequence 99.7 1.9E-18 6.4E-23 123.7 6.2 78 3-81 8-90 (107)
169 3q2s_C Cleavage and polyadenyl 99.7 3E-18 1E-22 139.1 8.2 77 5-81 67-148 (229)
170 2dnn_A RNA-binding protein 12; 99.7 6.1E-18 2.1E-22 120.7 8.5 74 6-81 16-91 (109)
171 2hzc_A Splicing factor U2AF 65 99.7 7E-18 2.4E-22 116.0 7.9 73 3-79 3-86 (87)
172 2e5i_A Heterogeneous nuclear r 99.7 1.8E-17 6.1E-22 120.5 10.3 77 5-84 22-103 (124)
173 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.9E-17 6.6E-22 127.9 11.2 127 50-176 11-144 (165)
174 3zzy_A Polypyrimidine tract-bi 99.7 1.1E-17 3.7E-22 122.1 9.1 75 8-84 30-107 (130)
175 2hgn_A Heterogeneous nuclear r 99.7 2.8E-18 9.4E-23 127.8 6.0 79 4-84 44-124 (139)
176 2dha_A FLJ20171 protein; RRM d 99.7 1.9E-18 6.6E-23 125.9 4.8 78 3-81 20-103 (123)
177 3d2w_A TAR DNA-binding protein 99.7 1.6E-17 5.5E-22 114.5 8.9 75 3-83 8-84 (89)
178 1wf0_A TDP-43, TAR DNA-binding 99.7 9.2E-18 3.1E-22 115.7 7.3 78 3-84 2-79 (88)
179 2hgm_A HNRPF protein, heteroge 99.7 1.2E-17 4E-22 122.0 8.0 76 4-81 40-119 (126)
180 2lcw_A RNA-binding protein FUS 99.6 3.9E-19 1.3E-23 129.3 0.0 82 3-84 4-96 (116)
181 4fxv_A ELAV-like protein 1; RN 99.7 5.4E-17 1.9E-21 114.1 10.9 70 107-176 18-91 (99)
182 2bz2_A Negative elongation fac 99.7 2.8E-17 9.5E-22 119.9 9.6 76 4-84 37-112 (121)
183 2pe8_A Splicing factor 45; RRM 99.7 2.7E-17 9.2E-22 116.6 9.1 81 2-82 4-93 (105)
184 2dnl_A Cytoplasmic polyadenyla 99.7 3.1E-17 1.1E-21 118.7 8.9 74 3-79 5-84 (114)
185 2xs2_A Deleted in azoospermia- 99.7 1E-17 3.6E-22 118.8 5.1 78 4-83 7-86 (102)
186 2jvr_A Nucleolar protein 3; RN 99.7 7E-17 2.4E-21 115.4 8.9 77 106-186 26-103 (111)
187 2lea_A Serine/arginine-rich sp 99.7 3.4E-17 1.2E-21 121.9 7.5 111 46-176 5-119 (135)
188 2qfj_A FBP-interacting repress 99.7 1.1E-16 3.6E-21 129.3 10.5 81 4-84 123-206 (216)
189 3md3_A Nuclear and cytoplasmic 99.7 8.8E-17 3E-21 124.2 9.3 79 3-81 84-165 (166)
190 3u1l_A PRE-mRNA-splicing facto 99.7 4.9E-17 1.7E-21 131.4 7.8 78 4-84 132-230 (240)
191 4f02_A Polyadenylate-binding p 99.7 6.6E-17 2.3E-21 130.3 8.5 78 5-82 102-180 (213)
192 1x4a_A Splicing factor, argini 99.7 1.3E-15 4.4E-20 109.2 14.0 82 103-188 17-99 (109)
193 2fy1_A RNA-binding motif prote 99.7 7E-16 2.4E-20 111.8 12.4 71 106-176 5-78 (116)
194 2dit_A HIV TAT specific factor 99.7 3.2E-16 1.1E-20 112.9 10.5 81 3-84 12-103 (112)
195 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.9E-15 6.6E-20 107.2 14.1 82 103-188 10-93 (103)
196 3s8s_A Histone-lysine N-methyl 99.7 5.8E-16 2E-20 110.9 11.0 72 106-177 4-79 (110)
197 2wbr_A GW182, gawky, LD47780P; 99.7 5.7E-16 1.9E-20 103.8 10.1 73 107-185 6-78 (89)
198 2cq3_A RNA-binding protein 9; 99.7 2E-15 6.7E-20 107.1 13.4 82 103-188 10-93 (103)
199 1sjq_A Polypyrimidine tract-bi 99.7 6E-16 2.1E-20 108.7 10.4 77 105-187 13-91 (105)
200 3ex7_B RNA-binding protein 8A; 99.7 3.4E-16 1.2E-20 115.4 9.6 73 104-176 18-94 (126)
201 1fje_B Nucleolin RBD12, protei 99.7 1.3E-16 4.5E-21 124.5 7.7 77 4-82 97-173 (175)
202 2j8a_A Histone-lysine N-methyl 99.7 1.2E-16 4E-21 114.4 6.7 75 7-81 3-94 (136)
203 2g4b_A Splicing factor U2AF 65 99.7 1.5E-16 5.3E-21 123.7 7.9 77 4-80 92-171 (172)
204 2cjk_A Nuclear polyadenylated 99.7 2E-16 6.8E-21 122.4 8.3 77 5-82 86-165 (167)
205 2yh0_A Splicing factor U2AF 65 99.7 2.7E-16 9.3E-21 125.1 9.3 81 4-84 112-195 (198)
206 4f25_A Polyadenylate-binding p 99.7 5.9E-16 2E-20 112.1 10.0 75 108-186 5-81 (115)
207 2d9p_A Polyadenylate-binding p 99.7 8.8E-16 3E-20 108.9 10.7 74 103-176 10-85 (103)
208 1b7f_A Protein (SXL-lethal pro 99.7 3.8E-16 1.3E-20 120.9 9.4 77 4-80 87-168 (168)
209 2dnq_A RNA-binding protein 4B; 99.7 1.8E-15 6.3E-20 104.5 11.8 76 105-188 5-80 (90)
210 2dnm_A SRP46 splicing factor; 99.6 1.1E-15 3.7E-20 108.5 10.7 74 103-176 8-85 (103)
211 3nmr_A Cugbp ELAV-like family 99.6 3.4E-16 1.2E-20 122.0 8.9 76 5-80 94-174 (175)
212 1whw_A Hypothetical protein ri 99.6 2.5E-15 8.5E-20 105.8 12.5 79 106-188 6-88 (99)
213 2dgx_A KIAA0430 protein; RRM d 99.6 1.7E-15 5.7E-20 106.0 11.4 80 105-188 6-90 (96)
214 2cq0_A Eukaryotic translation 99.6 1.9E-15 6.6E-20 107.2 11.8 81 104-188 11-95 (103)
215 2dnz_A Probable RNA-binding pr 99.6 1.6E-15 5.5E-20 105.9 11.2 78 107-188 4-85 (95)
216 4a8x_A RNA-binding protein wit 99.6 9.4E-16 3.2E-20 105.5 9.8 71 107-177 3-78 (88)
217 2cpz_A CUG triplet repeat RNA- 99.6 4.6E-15 1.6E-19 107.4 13.9 81 104-188 21-105 (115)
218 2dgt_A RNA-binding protein 30; 99.6 2.9E-15 9.8E-20 104.0 12.1 77 104-188 6-82 (92)
219 2dgo_A Cytotoxic granule-assoc 99.6 8.8E-15 3E-19 105.9 15.1 82 103-188 10-95 (115)
220 2e5j_A Methenyltetrahydrofolat 99.6 1.8E-15 6.2E-20 106.1 11.0 73 103-176 14-86 (97)
221 2cpf_A RNA binding motif prote 99.6 2E-15 6.7E-20 106.1 11.2 78 107-188 4-88 (98)
222 1x5s_A Cold-inducible RNA-bind 99.6 1.9E-15 6.4E-20 107.0 11.1 76 104-179 8-87 (102)
223 2voo_A Lupus LA protein; RNA-b 99.6 6.1E-16 2.1E-20 122.3 9.0 77 6-83 109-187 (193)
224 2dgs_A DAZ-associated protein 99.6 2.7E-15 9.1E-20 105.6 11.3 72 104-176 6-81 (99)
225 1l3k_A Heterogeneous nuclear r 99.6 5.9E-16 2E-20 123.0 8.8 81 4-85 102-185 (196)
226 2cqb_A Peptidyl-prolyl CIS-tra 99.6 1.7E-15 5.8E-20 107.3 10.2 80 105-188 9-92 (102)
227 1x5u_A Splicing factor 3B subu 99.6 3.7E-15 1.3E-19 106.1 12.0 74 103-176 10-87 (105)
228 1fxl_A Paraneoplastic encephal 99.6 8E-16 2.7E-20 118.9 9.2 77 4-80 86-167 (167)
229 2cqc_A Arginine/serine-rich sp 99.6 5.5E-15 1.9E-19 103.2 12.5 74 103-176 10-87 (95)
230 3bs9_A Nucleolysin TIA-1 isofo 99.6 2.4E-15 8.3E-20 103.2 10.4 71 106-176 4-78 (87)
231 2dgu_A Heterogeneous nuclear r 99.6 7.2E-15 2.5E-19 104.2 13.1 75 106-188 9-83 (103)
232 1x5t_A Splicing factor 3B subu 99.6 2.2E-15 7.4E-20 105.5 10.2 77 107-187 4-85 (96)
233 1x4h_A RNA-binding protein 28; 99.6 6.2E-15 2.1E-19 106.0 12.9 83 103-189 10-102 (111)
234 3v4m_A Splicing factor U2AF 65 99.6 8.4E-16 2.9E-20 108.9 8.1 79 3-81 2-95 (105)
235 2dnp_A RNA-binding protein 14; 99.6 3E-15 1E-19 103.4 10.8 76 105-188 6-81 (90)
236 1x4g_A Nucleolysin TIAR; struc 99.6 4.1E-15 1.4E-19 106.6 11.8 77 106-188 23-99 (109)
237 2div_A TRNA selenocysteine ass 99.6 3.9E-15 1.3E-19 104.8 11.4 83 105-187 6-93 (99)
238 1wi8_A EIF-4B, eukaryotic tran 99.6 3.8E-15 1.3E-19 105.8 11.5 80 103-188 10-94 (104)
239 3pgw_A U1-A; protein-RNA compl 99.6 1.3E-15 4.4E-20 128.1 10.5 76 4-81 205-281 (282)
240 2cq1_A PTB-like protein L; RRM 99.6 5.9E-15 2E-19 103.6 12.2 72 103-176 10-83 (101)
241 1x4d_A Matrin 3; structural ge 99.6 1.4E-15 4.7E-20 106.8 8.7 69 106-176 13-84 (102)
242 2dnh_A Bruno-like 5, RNA bindi 99.6 4.9E-15 1.7E-19 105.5 11.8 68 106-173 13-83 (105)
243 1qm9_A Polypyrimidine tract-bi 99.6 1.2E-15 4.2E-20 121.4 9.5 77 4-82 118-196 (198)
244 2dng_A Eukaryotic translation 99.6 8E-15 2.7E-19 103.9 12.7 80 103-188 10-93 (103)
245 3md1_A Nuclear and cytoplasmic 99.6 4.1E-15 1.4E-19 101.0 10.7 68 109-176 2-73 (83)
246 2cph_A RNA binding motif prote 99.6 5.9E-15 2E-19 105.4 11.8 74 103-176 10-89 (107)
247 2do4_A Squamous cell carcinoma 99.6 1E-14 3.4E-19 102.9 12.8 81 104-188 13-96 (100)
248 1u6f_A Tcubp1, RNA-binding pro 99.6 3E-14 1E-18 106.8 16.1 82 103-188 37-122 (139)
249 3mdf_A Peptidyl-prolyl CIS-tra 99.6 3.4E-15 1.1E-19 102.0 9.9 71 106-176 5-79 (85)
250 2x1f_A MRNA 3'-END-processing 99.6 3.2E-15 1.1E-19 104.6 10.0 69 108-176 2-74 (96)
251 3r27_A HnRNP L, heterogeneous 99.6 3.4E-15 1.2E-19 103.8 9.9 70 105-176 18-89 (100)
252 1why_A Hypothetical protein ri 99.6 3E-15 1E-19 104.9 9.9 70 105-176 14-85 (97)
253 2dgp_A Bruno-like 4, RNA bindi 99.6 5.2E-15 1.8E-19 105.5 11.2 73 104-176 9-88 (106)
254 2lxi_A RNA-binding protein 10; 99.6 1.1E-15 3.8E-20 105.7 7.1 76 109-188 2-83 (91)
255 2adc_A Polypyrimidine tract-bi 99.6 2.8E-15 9.6E-20 122.1 10.7 77 4-82 149-227 (229)
256 2cpi_A CCR4-NOT transcription 99.6 3.2E-15 1.1E-19 107.5 9.7 82 104-189 11-102 (111)
257 2do0_A HnRNP M, heterogeneous 99.6 3E-14 1E-18 102.9 14.9 73 104-176 11-86 (114)
258 2cpd_A Apobec-1 stimulating pr 99.6 1.7E-14 5.9E-19 101.4 13.2 77 104-188 11-89 (99)
259 1p27_B RNA-binding protein 8A; 99.6 5.7E-15 2E-19 105.3 10.9 73 104-176 19-95 (106)
260 2hvz_A Splicing factor, argini 99.6 3.3E-15 1.1E-19 105.6 9.5 67 109-176 1-67 (101)
261 1wf1_A RNA-binding protein RAL 99.6 7.7E-15 2.6E-19 105.3 11.6 67 106-176 25-92 (110)
262 2ad9_A Polypyrimidine tract-bi 99.6 3.5E-15 1.2E-19 107.4 9.6 71 104-176 27-99 (119)
263 2jvo_A Nucleolar protein 3; nu 99.6 4E-15 1.4E-19 106.3 9.8 77 103-187 26-102 (108)
264 2la6_A RNA-binding protein FUS 99.6 6.8E-15 2.3E-19 103.5 10.8 74 103-176 8-93 (99)
265 2cpx_A Hypothetical protein FL 99.6 8.7E-15 3E-19 106.0 11.6 72 105-176 22-97 (115)
266 2cpe_A RNA-binding protein EWS 99.6 8.6E-15 2.9E-19 105.6 11.5 81 104-188 11-103 (113)
267 2e5h_A Zinc finger CCHC-type a 99.6 6.8E-15 2.3E-19 102.5 10.6 74 103-176 11-88 (94)
268 2cpj_A Non-POU domain-containi 99.6 8.2E-15 2.8E-19 103.1 11.0 71 104-176 11-81 (99)
269 1wex_A Hypothetical protein (r 99.6 5.9E-15 2E-19 104.3 10.2 70 105-176 12-83 (104)
270 3ulh_A THO complex subunit 4; 99.6 1.2E-14 4E-19 103.9 11.9 76 103-178 24-102 (107)
271 2dhg_A TRNA selenocysteine ass 99.6 9.9E-15 3.4E-19 103.7 11.5 80 104-187 5-89 (104)
272 2kxn_B Transformer-2 protein h 99.6 4.8E-15 1.6E-19 109.3 9.9 81 103-187 41-125 (129)
273 3tyt_A Heterogeneous nuclear r 99.6 1.4E-15 4.8E-20 121.5 7.5 77 4-80 121-204 (205)
274 2dh8_A DAZ-associated protein 99.6 1.9E-14 6.5E-19 102.4 12.6 82 103-189 11-96 (105)
275 3p5t_L Cleavage and polyadenyl 99.6 1.6E-15 5.4E-20 104.8 6.8 75 109-187 2-82 (90)
276 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.2E-14 4E-19 111.2 12.3 71 106-176 37-111 (156)
277 2err_A Ataxin-2-binding protei 99.6 4.6E-15 1.6E-19 106.2 9.3 74 103-176 24-99 (109)
278 2xnq_A Nuclear polyadenylated 99.6 8.4E-15 2.9E-19 102.5 10.3 70 103-176 17-87 (97)
279 1oo0_B CG8781-PA, drosophila Y 99.6 7.6E-15 2.6E-19 105.4 10.3 74 103-176 21-98 (110)
280 2jrs_A RNA-binding protein 39; 99.6 1.2E-14 4E-19 103.9 11.2 74 103-176 21-98 (108)
281 1sjr_A Polypyrimidine tract-bi 99.6 7.9E-15 2.7E-19 111.0 10.7 68 106-173 44-111 (164)
282 2ywk_A Putative RNA-binding pr 99.6 1.4E-14 4.8E-19 101.1 11.2 74 103-176 11-87 (95)
283 2dgv_A HnRNP M, heterogeneous 99.6 1.1E-14 3.8E-19 101.0 10.5 72 105-176 5-78 (92)
284 2cqh_A IGF-II mRNA-binding pro 99.6 5.4E-15 1.8E-19 102.8 8.9 76 106-188 6-83 (93)
285 2kt5_A RNA and export factor-b 99.6 5E-14 1.7E-18 103.3 14.5 76 103-178 30-108 (124)
286 2fc9_A NCL protein; structure 99.6 6.1E-15 2.1E-19 104.2 9.2 81 104-188 11-91 (101)
287 2lkz_A RNA-binding protein 5; 99.6 3.1E-15 1E-19 103.9 7.5 73 104-176 5-87 (95)
288 2e44_A Insulin-like growth fac 99.6 7.5E-15 2.6E-19 102.7 9.6 73 104-176 11-84 (96)
289 3tht_A Alkylated DNA repair pr 99.6 3.1E-15 1.1E-19 127.2 8.9 77 2-81 14-97 (345)
290 2cqd_A RNA-binding region cont 99.6 4.2E-14 1.4E-18 102.5 13.5 73 103-176 12-88 (116)
291 2cqp_A RNA-binding protein 12; 99.6 8.1E-15 2.8E-19 102.9 9.3 73 104-176 11-87 (98)
292 2d9o_A DNAJ (HSP40) homolog, s 99.6 2.7E-14 9.3E-19 99.8 11.8 77 4-84 8-91 (100)
293 2la4_A Nuclear and cytoplasmic 99.6 1.1E-14 3.6E-19 102.9 9.9 68 106-175 25-92 (101)
294 2kvi_A Nuclear polyadenylated 99.6 1.2E-14 3.9E-19 101.7 9.9 73 105-181 7-80 (96)
295 2khc_A Testis-specific RNP-typ 99.6 2.9E-14 9.9E-19 103.7 12.3 75 103-177 35-113 (118)
296 2ytc_A PRE-mRNA-splicing facto 99.6 1.6E-14 5.3E-19 98.6 10.0 72 103-176 7-79 (85)
297 2e5i_A Heterogeneous nuclear r 99.6 3.4E-14 1.2E-18 103.2 12.2 76 107-186 24-100 (124)
298 3ucg_A Polyadenylate-binding p 99.6 2.2E-14 7.6E-19 98.8 10.8 74 108-186 6-83 (89)
299 1x4e_A RNA binding motif, sing 99.6 2.7E-15 9.1E-20 102.5 5.7 70 106-175 3-76 (85)
300 3ns6_A Eukaryotic translation 99.6 7.8E-15 2.7E-19 103.3 7.9 70 107-176 5-85 (100)
301 2a3j_A U1 small nuclear ribonu 99.6 1.7E-14 5.8E-19 105.7 9.8 72 105-176 26-102 (127)
302 2cqg_A TDP-43, TAR DNA-binding 99.6 1.2E-13 4.1E-18 97.8 13.9 80 103-188 10-93 (103)
303 1x4b_A Heterogeneous nuclear r 99.6 4E-14 1.4E-18 102.6 11.6 80 106-190 25-108 (116)
304 1x5p_A Negative elongation fac 99.6 9E-14 3.1E-18 97.3 13.1 76 105-188 12-87 (97)
305 2krb_A Eukaryotic translation 99.6 7.7E-15 2.6E-19 99.2 7.2 68 109-176 2-78 (81)
306 1s79_A Lupus LA protein; RRM, 99.6 2.3E-14 7.8E-19 101.2 9.8 73 106-179 9-84 (103)
307 2cq4_A RNA binding motif prote 99.6 7.9E-15 2.7E-19 106.0 7.6 70 106-176 23-96 (114)
308 3s7r_A Heterogeneous nuclear r 99.6 4.5E-14 1.5E-18 96.8 11.1 72 104-176 7-82 (87)
309 3n9u_C Cleavage and polyadenyl 99.6 2.5E-14 8.5E-19 108.9 10.5 70 107-176 54-129 (156)
310 2hgn_A Heterogeneous nuclear r 99.6 1.9E-15 6.4E-20 112.4 4.1 113 46-178 2-117 (139)
311 3lqv_A PRE-mRNA branch site pr 99.6 3.7E-14 1.3E-18 102.6 10.8 73 105-177 5-78 (115)
312 2ek1_A RNA-binding protein 12; 99.5 8.4E-15 2.9E-19 102.2 6.9 71 106-176 13-87 (95)
313 1x4f_A Matrin 3; structural ge 99.5 2.3E-14 7.8E-19 102.0 9.2 71 105-177 22-95 (112)
314 1whx_A Hypothetical protein ri 99.5 1.7E-14 6E-19 103.5 8.7 71 107-179 9-79 (111)
315 2e5g_A U6 snRNA-specific termi 99.5 7.2E-14 2.5E-18 97.2 11.6 72 107-185 7-79 (94)
316 3zzy_A Polypyrimidine tract-bi 99.5 4.4E-14 1.5E-18 102.9 10.8 77 106-185 26-103 (130)
317 2dgw_A Probable RNA-binding pr 99.5 8.3E-14 2.8E-18 96.3 11.7 78 104-187 6-86 (91)
318 1p1t_A Cleavage stimulation fa 99.5 1.3E-14 4.4E-19 103.1 7.6 71 106-176 6-80 (104)
319 3ue2_A Poly(U)-binding-splicin 99.5 1.1E-14 3.8E-19 105.1 7.3 78 4-81 18-107 (118)
320 2cq2_A Hypothetical protein LO 99.5 3.1E-14 1.1E-18 101.4 9.3 65 105-171 22-88 (114)
321 2jwn_A Embryonic polyadenylate 99.5 4.5E-14 1.5E-18 103.6 10.6 75 107-186 35-113 (124)
322 2diu_A KIAA0430 protein; struc 99.5 3.7E-14 1.3E-18 95.9 9.1 71 108-188 9-84 (96)
323 1wez_A HnRNP H', FTP-3, hetero 99.5 3.6E-14 1.2E-18 100.1 9.6 75 103-179 10-87 (102)
324 2m2b_A RNA-binding protein 10; 99.5 2.4E-14 8.4E-19 106.0 9.1 72 104-176 19-100 (131)
325 1nu4_A U1A RNA binding domain; 99.5 1.4E-14 4.9E-19 101.4 7.4 73 104-176 4-81 (97)
326 1jmt_A Splicing factor U2AF 35 99.5 1.8E-15 6.3E-20 107.0 2.7 69 12-80 21-103 (104)
327 3s6e_A RNA-binding protein 39; 99.5 3.6E-14 1.2E-18 101.7 9.5 78 3-81 4-91 (114)
328 1fjc_A Nucleolin RBD2, protein 99.5 1.7E-14 5.8E-19 100.8 7.6 79 104-187 12-90 (96)
329 1wg5_A Heterogeneous nuclear r 99.5 4.7E-14 1.6E-18 100.1 9.8 76 103-179 10-89 (104)
330 2hgl_A HNRPF protein, heteroge 99.5 2E-14 6.9E-19 106.5 8.2 73 103-176 39-117 (136)
331 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 9E-14 3.1E-18 104.2 11.6 74 103-176 58-135 (140)
332 2dnn_A RNA-binding protein 12; 99.5 3.7E-14 1.3E-18 101.0 8.8 71 105-177 13-86 (109)
333 2nlw_A Eukaryotic translation 99.5 4.7E-14 1.6E-18 100.2 9.1 71 106-176 13-92 (105)
334 2f3j_A RNA and export factor b 99.5 1.5E-13 5E-18 107.0 12.6 79 103-181 83-164 (177)
335 2j76_E EIF-4B, EIF4B, eukaryot 99.5 7.5E-15 2.6E-19 103.5 4.8 72 103-176 14-90 (100)
336 2rs2_A Musashi-1, RNA-binding 99.5 7.3E-14 2.5E-18 99.9 9.6 78 105-187 22-103 (109)
337 3sde_A Paraspeckle component 1 99.5 3.4E-14 1.2E-18 118.0 8.7 80 4-83 94-179 (261)
338 2mss_A Protein (musashi1); RNA 99.5 3.5E-14 1.2E-18 94.4 7.1 66 110-176 1-70 (75)
339 2cpy_A RNA-binding protein 12; 99.5 4.9E-14 1.7E-18 101.7 8.2 74 105-179 12-89 (114)
340 1uaw_A Mouse-musashi-1; RNP-ty 99.5 3E-14 1E-18 95.3 6.6 68 109-177 1-72 (77)
341 2dis_A Unnamed protein product 99.5 1.8E-13 6E-18 98.0 11.0 71 106-176 6-84 (109)
342 2hzc_A Splicing factor U2AF 65 99.5 1.1E-13 3.8E-18 94.8 9.4 68 106-176 4-82 (87)
343 1wel_A RNA-binding protein 12; 99.5 7.1E-14 2.4E-18 102.5 8.9 76 104-180 21-100 (124)
344 2db1_A Heterogeneous nuclear r 99.5 1.2E-13 4.1E-18 100.2 10.0 77 103-180 12-94 (118)
345 2fc8_A NCL protein; structure 99.5 2.2E-13 7.6E-18 96.2 11.1 79 103-188 10-92 (102)
346 3q2s_C Cleavage and polyadenyl 99.5 1.2E-13 4E-18 112.1 10.3 73 107-179 67-145 (229)
347 3d2w_A TAR DNA-binding protein 99.5 1.2E-13 4.2E-18 94.8 8.6 67 103-174 6-74 (89)
348 1fj7_A Nucleolin RBD1, protein 99.5 1.3E-13 4.4E-18 97.3 8.9 77 106-187 15-94 (101)
349 1wg1_A KIAA1579 protein, homol 99.5 5.6E-14 1.9E-18 96.5 6.6 67 107-176 4-70 (88)
350 1x5o_A RNA binding motif, sing 99.5 3.9E-13 1.3E-17 97.0 11.4 70 105-174 22-94 (114)
351 2ki2_A SS-DNA binding protein 99.5 6E-14 2.1E-18 96.8 6.1 70 109-179 2-75 (90)
352 2lmi_A GRSF-1, G-rich sequence 99.5 7.2E-14 2.4E-18 99.7 6.6 74 104-178 7-86 (107)
353 3egn_A RNA-binding protein 40; 99.5 2.4E-13 8.3E-18 102.2 9.5 71 106-176 43-122 (143)
354 1iqt_A AUF1, heterogeneous nuc 99.4 1.4E-13 4.7E-18 91.5 6.5 67 110-177 1-71 (75)
355 2bz2_A Negative elongation fac 99.4 3.6E-13 1.2E-17 98.0 8.8 68 105-176 36-103 (121)
356 2xs2_A Deleted in azoospermia- 99.4 5.5E-13 1.9E-17 94.2 9.5 71 105-177 6-79 (102)
357 1wf0_A TDP-43, TAR DNA-binding 99.4 1.7E-13 5.9E-18 94.0 6.6 73 107-188 4-78 (88)
358 2hgm_A HNRPF protein, heteroge 99.4 3.8E-13 1.3E-17 98.1 8.7 75 104-180 38-117 (126)
359 2dha_A FLJ20171 protein; RRM d 99.4 3.3E-13 1.1E-17 98.2 8.3 74 106-180 21-101 (123)
360 2lcw_A RNA-binding protein FUS 99.1 1.6E-14 5.6E-19 104.6 0.0 79 106-188 5-95 (116)
361 2j8a_A Histone-lysine N-methyl 99.4 1.3E-12 4.4E-17 93.5 9.1 69 109-177 3-89 (136)
362 2dit_A HIV TAT specific factor 99.4 4.2E-12 1.4E-16 91.2 11.8 72 105-176 12-94 (112)
363 2dnl_A Cytoplasmic polyadenyla 99.4 5.4E-13 1.8E-17 96.2 6.5 60 106-166 6-72 (114)
364 2pe8_A Splicing factor 45; RRM 99.4 3.6E-12 1.2E-16 90.1 10.1 74 106-179 6-89 (105)
365 1owx_A Lupus LA protein, SS-B, 99.4 3.9E-12 1.3E-16 91.1 9.5 74 4-80 16-93 (121)
366 2voo_A Lupus LA protein; RNA-b 99.3 7.4E-12 2.5E-16 98.7 11.5 71 107-178 108-181 (193)
367 3u1l_A PRE-mRNA-splicing facto 99.3 6.1E-12 2.1E-16 101.6 7.9 65 105-171 131-204 (240)
368 3tht_A Alkylated DNA repair pr 99.3 1.4E-11 4.8E-16 104.8 9.6 67 104-172 14-82 (345)
369 3v4m_A Splicing factor U2AF 65 99.3 2.1E-11 7E-16 86.2 8.3 74 107-180 4-93 (105)
370 3s6e_A RNA-binding protein 39; 99.2 4E-11 1.4E-15 85.8 9.5 76 106-181 5-90 (114)
371 3ue2_A Poly(U)-binding-splicin 99.2 3.6E-11 1.2E-15 86.6 8.6 74 107-180 19-105 (118)
372 2dnr_A Synaptojanin-1; RRM dom 99.2 3.6E-11 1.2E-15 80.5 7.8 74 4-83 5-86 (91)
373 1owx_A Lupus LA protein, SS-B, 99.2 9E-11 3.1E-15 84.0 8.4 75 103-179 13-91 (121)
374 1jmt_A Splicing factor U2AF 35 99.1 1.6E-11 5.4E-16 86.7 3.3 65 113-177 20-99 (104)
375 2d9o_A DNAJ (HSP40) homolog, s 99.1 7.8E-10 2.7E-14 77.0 11.3 55 118-175 27-81 (100)
376 1ufw_A Synaptojanin 2; RNP dom 99.1 1.6E-10 5.6E-15 77.7 4.9 72 4-81 13-93 (95)
377 2dnr_A Synaptojanin-1; RRM dom 99.0 1.1E-09 3.8E-14 73.3 7.9 74 107-189 6-87 (91)
378 3dxb_A Thioredoxin N-terminall 98.9 1.5E-09 5.2E-14 87.6 7.3 77 5-81 123-211 (222)
379 1ufw_A Synaptojanin 2; RNP dom 98.8 8.5E-09 2.9E-13 69.4 6.6 66 106-176 13-87 (95)
380 2l9w_A U4/U6 snRNA-associated- 98.8 4E-08 1.4E-12 67.4 8.5 72 4-78 19-95 (117)
381 2dhx_A Poly (ADP-ribose) polym 98.6 5.1E-07 1.8E-11 61.5 10.7 89 4-121 6-99 (104)
382 1wey_A Calcipressin 1; structu 98.6 4.6E-07 1.6E-11 62.0 9.2 76 3-81 2-82 (104)
383 3dxb_A Thioredoxin N-terminall 98.5 2.7E-07 9.4E-12 74.2 7.4 61 120-180 141-209 (222)
384 2l9w_A U4/U6 snRNA-associated- 98.4 3E-06 1E-10 58.1 9.2 68 107-176 20-92 (117)
385 1uw4_A UPF3X; nonsense mediate 98.1 7.8E-06 2.7E-10 55.1 6.7 65 7-71 2-71 (91)
386 1whv_A Poly(A)-specific ribonu 98.1 1.1E-05 3.9E-10 54.2 6.9 55 6-66 16-70 (100)
387 1wwh_A Nucleoporin 35, nucleop 98.0 1.7E-05 5.8E-10 55.9 7.0 71 5-80 23-94 (119)
388 3ctr_A Poly(A)-specific ribonu 97.9 1.3E-05 4.6E-10 54.0 5.1 54 7-66 7-60 (101)
389 1wey_A Calcipressin 1; structu 97.9 5.4E-05 1.9E-09 51.8 7.6 71 108-180 5-80 (104)
390 1uw4_A UPF3X; nonsense mediate 97.7 0.00027 9.1E-09 47.6 8.8 67 109-175 2-74 (91)
391 1wwh_A Nucleoporin 35, nucleop 97.7 0.0002 6.9E-09 50.4 8.4 67 105-175 21-87 (119)
392 2l08_A Regulator of nonsense t 97.7 7.3E-05 2.5E-09 50.6 5.6 77 5-81 8-94 (97)
393 1whv_A Poly(A)-specific ribonu 97.7 0.00028 9.4E-09 47.5 7.9 54 109-167 17-70 (100)
394 2dhx_A Poly (ADP-ribose) polym 97.5 0.00064 2.2E-08 46.3 8.2 63 107-174 7-74 (104)
395 3p3d_A Nucleoporin 53; structu 97.5 0.00013 4.3E-09 52.2 4.5 75 4-80 5-96 (132)
396 3ctr_A Poly(A)-specific ribonu 97.4 0.00033 1.1E-08 47.3 5.6 53 110-167 8-60 (101)
397 3pq1_A Poly(A) RNA polymerase; 97.0 0.00039 1.3E-08 61.3 3.4 56 5-63 52-107 (464)
398 2l08_A Regulator of nonsense t 96.8 0.0014 4.9E-08 44.2 4.4 69 108-176 9-83 (97)
399 3p3d_A Nucleoporin 53; structu 96.4 0.0039 1.3E-07 44.5 4.6 66 107-174 6-89 (132)
400 3pq1_A Poly(A) RNA polymerase; 95.2 0.015 5.2E-07 51.2 4.1 56 108-165 53-108 (464)
401 3d45_A Poly(A)-specific ribonu 94.8 0.066 2.3E-06 48.1 7.2 56 6-67 440-495 (507)
402 2g0c_A ATP-dependent RNA helic 91.3 0.97 3.3E-05 28.8 6.9 68 8-81 2-75 (76)
403 4eyt_A Telomerase associated p 90.3 2.6 9E-05 27.5 8.6 69 4-79 10-78 (129)
404 3d45_A Poly(A)-specific ribonu 89.6 1.1 3.7E-05 40.2 7.9 55 108-167 440-494 (507)
405 4eyt_A Telomerase associated p 88.6 3.5 0.00012 26.9 7.7 56 107-166 11-66 (129)
406 4e8u_A Putative uncharacterize 83.9 1.5 5.2E-05 32.8 4.6 56 8-63 14-81 (172)
407 3j21_T 50S ribosomal protein L 68.4 21 0.00071 23.3 6.3 54 11-64 27-82 (86)
408 3lpe_A Putative transcription 67.7 21 0.00072 23.5 6.4 33 33-67 40-72 (92)
409 3j21_T 50S ribosomal protein L 67.5 23 0.00078 23.1 7.4 57 110-166 24-83 (86)
410 3ts2_A Protein LIN-28 homolog 62.5 1.2 4.3E-05 32.6 -0.6 28 21-53 2-29 (148)
411 3u5e_X 60S ribosomal protein L 62.1 35 0.0012 24.5 6.9 57 110-166 80-139 (142)
412 4a17_R RPL23A, 60S ribosomal p 61.9 34 0.0012 24.8 6.9 57 110-166 88-147 (150)
413 1vq8_S 50S ribosomal protein L 58.1 26 0.0009 22.7 5.3 53 11-63 26-80 (85)
414 3fry_A Probable copper-exporti 55.5 30 0.001 20.9 5.3 55 6-64 6-60 (73)
415 3iz5_X 60S ribosomal protein L 55.3 36 0.0012 24.7 6.1 57 110-166 90-149 (152)
416 2ns6_A Mobilization protein A; 53.4 19 0.00066 27.2 4.7 46 10-55 74-127 (185)
417 1nz8_A Transcription antitermi 52.0 48 0.0016 22.8 6.4 25 44-68 61-90 (119)
418 4a17_R RPL23A, 60S ribosomal p 50.0 40 0.0014 24.4 5.6 51 13-63 93-145 (150)
419 2zkr_s 60S ribosomal protein L 50.0 70 0.0024 23.4 6.9 57 110-166 94-153 (156)
420 1vq8_S 50S ribosomal protein L 48.5 53 0.0018 21.3 6.8 56 110-165 23-81 (85)
421 2f06_A Conserved hypothetical 48.4 69 0.0024 22.6 13.9 50 121-171 85-135 (144)
422 3u5e_X 60S ribosomal protein L 46.9 44 0.0015 24.0 5.3 53 11-63 83-137 (142)
423 1vd2_A Protein kinase C, IOTA 46.8 58 0.002 21.3 5.7 54 9-65 17-74 (89)
424 2zkr_s 60S ribosomal protein L 46.0 47 0.0016 24.3 5.5 53 11-63 97-151 (156)
425 2e5p_A Protein PHF1, PHD finge 44.5 11 0.00038 23.0 1.7 11 45-55 37-47 (68)
426 3iz5_X 60S ribosomal protein L 42.2 35 0.0012 24.8 4.3 51 13-63 95-147 (152)
427 2npt_B Mitogen-activated prote 42.2 72 0.0025 21.0 5.4 52 113-168 33-85 (100)
428 2cu1_A Mitogen-activated prote 41.9 22 0.00074 23.8 2.9 54 112-169 20-74 (103)
429 4a4j_A Pacszia, cation-transpo 41.6 52 0.0018 19.2 5.1 54 7-63 4-60 (69)
430 3h7h_B Transcription elongatio 41.4 39 0.0013 22.9 4.3 35 32-68 40-74 (106)
431 2eqj_A Metal-response element- 40.2 15 0.00052 22.5 1.8 11 45-55 41-51 (66)
432 2m0o_A PHD finger protein 1; t 40.0 14 0.00048 23.2 1.7 11 45-55 54-64 (79)
433 4bby_A Alkyldihydroxyacetoneph 39.1 19 0.00065 33.3 3.2 54 13-66 350-409 (658)
434 3fut_A Dimethyladenosine trans 38.8 26 0.00088 28.3 3.6 31 7-38 111-141 (271)
435 3dxs_X Copper-transporting ATP 37.8 64 0.0022 19.2 5.4 56 7-65 4-63 (74)
436 2jrh_A Mitogen-activated prote 37.6 74 0.0025 20.7 4.8 53 113-169 17-70 (94)
437 3uzu_A Ribosomal RNA small sub 36.2 13 0.00045 30.3 1.4 33 6-38 114-146 (279)
438 2c60_A Human mitogen-activated 36.1 69 0.0024 21.4 4.6 52 113-168 44-96 (111)
439 4e8u_A Putative uncharacterize 35.8 1.1E+02 0.0036 22.8 6.1 49 107-156 11-72 (172)
440 2od0_A Hypothetical protein VP 34.5 34 0.0012 23.0 3.2 22 18-39 4-25 (105)
441 3swz_A Steroid 17-alpha-hydrox 33.5 62 0.0021 28.1 5.6 60 8-74 16-79 (494)
442 2cu1_A Mitogen-activated prote 33.2 1.1E+02 0.0037 20.4 5.6 63 13-81 23-86 (103)
443 2g9o_A Copper-transporting ATP 32.9 78 0.0027 20.0 4.7 57 6-65 4-64 (90)
444 2e5q_A PHD finger protein 19; 32.4 9 0.00031 23.0 -0.1 13 44-56 34-46 (63)
445 2inr_A DNA topoisomerase 4 sub 31.6 87 0.003 27.9 5.9 60 6-67 275-341 (514)
446 2rf4_B DNA-directed RNA polyme 31.6 38 0.0013 21.9 2.7 27 4-30 17-43 (87)
447 2nn4_A Hypothetical protein YQ 30.5 20 0.00069 22.4 1.3 18 19-36 4-21 (72)
448 3lpe_A Putative transcription 29.4 1.2E+02 0.0041 19.7 6.7 45 124-169 28-73 (92)
449 4hcz_A PHD finger protein 1; p 28.1 30 0.001 20.5 1.7 12 45-56 31-42 (58)
450 1qyr_A KSGA, high level kasuga 27.7 38 0.0013 26.9 2.9 24 7-30 91-114 (252)
451 2cs4_A Protein C12ORF2; GTP bi 27.6 38 0.0013 22.5 2.3 21 11-31 21-42 (95)
452 1i4w_A Mitochondrial replicati 27.6 38 0.0013 28.6 2.9 22 8-29 144-165 (353)
453 1yjr_A Copper-transporting ATP 27.5 96 0.0033 18.0 7.5 48 4-54 3-50 (75)
454 2okq_A Hypothetical protein YB 27.4 1.7E+02 0.0058 20.9 6.3 43 123-165 48-109 (141)
455 3ftd_A Dimethyladenosine trans 27.3 36 0.0012 27.0 2.6 29 7-35 96-124 (249)
456 3e6i_A CYPIIE1, P450-J, cytoch 26.5 73 0.0025 27.4 4.8 48 10-63 20-70 (476)
457 3tbg_A Cytochrome P450 2D6; mo 26.2 39 0.0013 29.2 2.9 55 10-71 20-77 (479)
458 3tqs_A Ribosomal RNA small sub 25.8 18 0.00063 28.9 0.6 31 8-38 98-128 (255)
459 1yg0_A COP associated protein; 25.6 95 0.0033 17.4 6.1 54 8-64 4-60 (66)
460 1wvf_A 4-cresol dehydrogenase 25.3 41 0.0014 30.0 2.9 41 22-62 217-261 (520)
461 1eij_A Hypothetical protein MT 24.7 52 0.0018 21.0 2.4 20 12-31 50-69 (80)
462 2x4i_A CAG38848, uncharacteriz 23.6 1.8E+02 0.0062 19.9 5.1 65 49-140 41-111 (114)
463 3lpx_A GYRA, DNA gyrase, A sub 23.6 2.8E+02 0.0095 24.5 7.5 59 5-64 225-289 (500)
464 1ik9_C DNA ligase IV; DNA END 23.5 60 0.0021 17.2 2.2 15 16-30 20-34 (37)
465 3p8b_B Transcription antitermi 22.8 64 0.0022 23.3 3.1 34 33-68 33-66 (152)
466 2xmw_A PACS-N, cation-transpor 22.3 1.2E+02 0.004 17.3 6.4 55 7-64 5-62 (71)
467 1ytr_A Bacteriocin plantaricin 22.3 51 0.0017 15.2 1.5 12 20-31 14-25 (26)
468 2k5n_A Putative cold-shock pro 21.8 37 0.0013 21.3 1.4 11 44-54 13-23 (74)
469 3pm0_A Cypib1, cytochrome P450 21.6 1.5E+02 0.0052 25.6 5.9 56 9-71 18-75 (507)
470 3ced_A Methionine import ATP-b 21.4 73 0.0025 21.0 2.9 60 8-67 22-87 (98)
471 1cqm_A Ribosomal protein S6; a 21.2 1.1E+02 0.0037 20.3 3.7 50 14-63 10-76 (101)
472 2kyz_A Heavy metal binding pro 21.1 1.3E+02 0.0043 17.2 3.9 52 8-63 4-55 (67)
473 2kt2_A Mercuric reductase; nme 20.9 1.3E+02 0.0044 17.1 5.6 53 8-63 3-58 (69)
474 1aw0_A Menkes copper-transport 20.6 1.3E+02 0.0045 17.2 4.8 55 8-65 6-64 (72)
475 2lfv_A Protein DAMX; cell divi 25.7 22 0.00074 24.2 0.0 49 121-170 35-88 (106)
476 2l3m_A Copper-ION-binding prot 20.2 1.3E+02 0.0046 17.1 6.3 55 7-64 7-65 (71)
477 3ezj_A General secretion pathw 20.1 76 0.0026 24.9 3.2 65 17-81 12-85 (241)
478 3pm9_A Putative oxidoreductase 20.0 70 0.0024 28.2 3.3 52 14-65 194-251 (476)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=6.6e-35 Score=236.21 Aligned_cols=157 Identities=24% Similarity=0.373 Sum_probs=137.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
+.|++||||+|||+++|+++|+++|++||+|.+|.|.. ++.++|||||+|.+.++|..|+..||+..+.|+.|.|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 46789999999999999999999999999999999954 467789999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC--CEEEEEecChh
Q 022301 80 AHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG--TTGIVDYTNYD 157 (299)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~--~~~fv~f~~~~ 157 (299)
+..... .......+|||+|||..+++++|.++|..||.|..+.++.+..+ |||||+|.+.+
T Consensus 92 ~~~~~~-----------------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~ 154 (213)
T 4f02_A 92 SQRDPS-----------------LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 154 (213)
T ss_dssp CCCCTH-----------------HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHH
T ss_pred cccccc-----------------ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHH
Confidence 754321 11123468999999999999999999999999999999887643 59999999999
Q ss_pred hHHHHHHhcCCCeecCcee
Q 022301 158 DMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 158 ~a~~a~~~l~g~~~~g~~~ 176 (299)
+|+.|++.|||..|+|+.+
T Consensus 155 ~a~~Ai~~lng~~~~g~~i 173 (213)
T 4f02_A 155 AAERAIEKMNGMLLNDRKV 173 (213)
T ss_dssp HHHHHHHHHTTCEETTEEC
T ss_pred HHHHHHHHhCCCEECCEEE
Confidence 9999999999999999944
No 2
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=2e-33 Score=225.27 Aligned_cols=172 Identities=16% Similarity=0.221 Sum_probs=139.4
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 4 RASRTLYVGNLP-GDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 4 ~~~~~l~V~nLp-~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
.++++|||+||| ..+|+++|.++|+.||.|..|.|..+ .+|||||+|.+.++|..|+..|||..|.|+.|.|.++..
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 478999999999 79999999999999999999999754 379999999999999999999999999999999999875
Q ss_pred CCCCCCCC-CC-C------CCCCC--CC--------CCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCe--eEEEEEe
Q 022301 83 GRGRSSSD-RH-S------SHSSG--RG--------RGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDV--CFSQVFR 142 (299)
Q Consensus 83 ~~~~~~~~-~~-~------~~~~~--~~--------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v--~~~~~~~ 142 (299)
....+... .. . ..... .. ......+..+|||.|||..+++++|+++|.+||.| ..+.++.
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~ 159 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFS 159 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECS
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEc
Confidence 43211100 00 0 00000 00 00112456789999999999999999999999999 8888887
Q ss_pred CCC--CCEEEEEecChhhHHHHHHhcCCCeecCceee
Q 022301 143 DGS--GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (299)
Q Consensus 143 ~~~--~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (299)
+.. .|+|||+|.+.++|..||..|||..|.|....
T Consensus 160 ~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~ 196 (205)
T 3tyt_A 160 GKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGP 196 (205)
T ss_dssp CCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSS
T ss_pred CCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCC
Confidence 742 36999999999999999999999999997543
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-33 Score=217.55 Aligned_cols=153 Identities=25% Similarity=0.411 Sum_probs=137.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC--CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCCC
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~--~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 84 (299)
++|||+|||.++|+++|.++|+.||+|..|.+..+ +.++|||||+|.+.++|..|+..|||..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 58999999999999999999999999999999543 5678999999999999999998899999999999999986543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHH
Q 022301 85 GRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMK 160 (299)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~ 160 (299)
. .......+|+|+|||..+++++|.++|.+||.|..+.+..+... |||||+|.+.++|.
T Consensus 81 ~-----------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 143 (166)
T 3md3_A 81 Q-----------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQ 143 (166)
T ss_dssp C-----------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHH
T ss_pred C-----------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHH
Confidence 2 22345679999999999999999999999999999999988543 49999999999999
Q ss_pred HHHHhcCCCeecCcee
Q 022301 161 HAIKKLDDSEFRNAFS 176 (299)
Q Consensus 161 ~a~~~l~g~~~~g~~~ 176 (299)
.|+..|||..++|+.+
T Consensus 144 ~A~~~l~g~~~~g~~i 159 (166)
T 3md3_A 144 NAMDSMQGQDLNGRPL 159 (166)
T ss_dssp HHHHHHTTCEETTEEC
T ss_pred HHHHHhCCCccCCcEE
Confidence 9999999999999844
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=6.4e-33 Score=215.96 Aligned_cols=154 Identities=23% Similarity=0.402 Sum_probs=138.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
++++|||+|||+++|+++|+++|+.||+|..|.+.. ++.++|||||+|.+.++|..|+..|||..+.|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 478999999999999999999999999999999954 45677999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChh
Q 022301 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYD 157 (299)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~ 157 (299)
.... .....+|+|.|||..+++++|.++|.+||.|..+.+..+... |||||+|.+.+
T Consensus 81 ~~~~-------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 141 (167)
T 1fxl_A 81 PSSA-------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 141 (167)
T ss_dssp CCCG-------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCcc-------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHH
Confidence 4321 234578999999999999999999999999999999988633 59999999999
Q ss_pred hHHHHHHhcCCCeecCceee
Q 022301 158 DMKHAIKKLDDSEFRNAFSR 177 (299)
Q Consensus 158 ~a~~a~~~l~g~~~~g~~~~ 177 (299)
+|..|+..|||..+.|+.+.
T Consensus 142 ~A~~A~~~l~g~~~~g~~~~ 161 (167)
T 1fxl_A 142 EAEEAIKGLNGQKPSGATEP 161 (167)
T ss_dssp HHHHHHHHHTTCCCTTCSSC
T ss_pred HHHHHHHHhcCCccCCCccc
Confidence 99999999999999997543
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.3e-32 Score=214.48 Aligned_cols=150 Identities=27% Similarity=0.430 Sum_probs=136.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
++++|||+|||+++|+++|.++|+.||+|..|.+.. ++.++|||||+|.+.++|..|+..|||..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 689999999999999999999999999999999953 46678999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChh
Q 022301 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYD 157 (299)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~ 157 (299)
.... .....+|+|.|||..+++++|.++|.+||.|..+.+..+... |||||+|.+.+
T Consensus 82 ~~~~-------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~ 142 (168)
T 1b7f_A 82 PGGE-------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKRE 142 (168)
T ss_dssp CCSS-------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCcc-------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHH
Confidence 4331 234579999999999999999999999999999999988643 59999999999
Q ss_pred hHHHHHHhcCCCeecC
Q 022301 158 DMKHAIKKLDDSEFRN 173 (299)
Q Consensus 158 ~a~~a~~~l~g~~~~g 173 (299)
+|..|+..|||..+.|
T Consensus 143 ~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 143 EAQEAISALNNVIPEG 158 (168)
T ss_dssp HHHHHHHHHTTCCCTT
T ss_pred HHHHHHHHhcCCEecC
Confidence 9999999999999988
No 6
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=5.4e-32 Score=228.61 Aligned_cols=173 Identities=20% Similarity=0.272 Sum_probs=142.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVE----DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 78 (299)
..++++|||+|||.++|+++|+ ++|+.||.|..|.|..++..+|||||+|.+.++|..|+..|||..|.|+.|.|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 4789999999999999999966 999999999999998888899999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCC------------------------------------------------------------------
Q 022301 79 LAHGGRGRSSSDRH------------------------------------------------------------------ 92 (299)
Q Consensus 79 ~~~~~~~~~~~~~~------------------------------------------------------------------ 92 (299)
|+............
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Confidence 98654420000000
Q ss_pred --CCC-CCCC-----------------------CCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC
Q 022301 93 --SSH-SSGR-----------------------GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG 146 (299)
Q Consensus 93 --~~~-~~~~-----------------------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~ 146 (299)
... .... ..........+|||+|||..+++++|+++|.+||.|..+.+..+. .
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-~ 244 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-H 244 (282)
T ss_pred CCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-C
Confidence 000 0000 000123356789999999999999999999999999999998765 4
Q ss_pred CEEEEEecChhhHHHHHHhcCCCeec-Ccee
Q 022301 147 TTGIVDYTNYDDMKHAIKKLDDSEFR-NAFS 176 (299)
Q Consensus 147 ~~~fv~f~~~~~a~~a~~~l~g~~~~-g~~~ 176 (299)
|||||+|.+.++|..|+..|||..|. |+.+
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 275 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAM 275 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCCCEE
Confidence 69999999999999999999999999 8843
No 7
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.8e-32 Score=219.18 Aligned_cols=158 Identities=14% Similarity=0.289 Sum_probs=134.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.+.++|||+|||+++|+++|.++|+.||+|..|.|.. ++.++|||||+|.+.++|..|+. +++..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeeecc
Confidence 5678999999999999999999999999999999965 35678999999999999999999 5999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecCh
Q 022301 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNY 156 (299)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~ 156 (299)
........ ........+|||.|||..+++++|.++|..||.|..+.++.+... |||||+|.+.
T Consensus 90 ~~~~~~~~-------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 90 VSREDSQR-------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp CC------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred cCcccccc-------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 65432111 112334589999999999999999999999999999999988643 5999999999
Q ss_pred hhHHHHHHhcCCCeecCcee
Q 022301 157 DDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 157 ~~a~~a~~~l~g~~~~g~~~ 176 (299)
++|..|+.. +|..|+|+.+
T Consensus 157 ~~A~~A~~~-~~~~~~G~~i 175 (196)
T 1l3k_A 157 DSVDKIVIQ-KYHTVNGHNC 175 (196)
T ss_dssp HHHHHHHHC-SCCEETTEEC
T ss_pred HHHHHHHHh-CCcEECCEEE
Confidence 999999986 7999999944
No 8
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=8.8e-32 Score=220.25 Aligned_cols=171 Identities=16% Similarity=0.245 Sum_probs=140.1
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 3 SRASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 3 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
..++++|||+|||+ ++++++|+++|+.||+|..|.|..+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 46789999999999 99999999999999999999997654 7899999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCC------C----------CCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEeCC
Q 022301 82 GGRGRSSSDRHSS------H----------SSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDG 144 (299)
Q Consensus 82 ~~~~~~~~~~~~~------~----------~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~~~~~~ 144 (299)
............. . ...........+..+|||.|||..+++++|.++|.+|| .|..+.++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~- 187 (229)
T 2adc_A 109 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 187 (229)
T ss_dssp CCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-
T ss_pred CccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-
Confidence 5532211100000 0 00000011234578999999999999999999999999 9999998653
Q ss_pred CCCEEEEEecChhhHHHHHHhcCCCeec-Ccee
Q 022301 145 SGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFS 176 (299)
Q Consensus 145 ~~~~~fv~f~~~~~a~~a~~~l~g~~~~-g~~~ 176 (299)
..+||||+|.+.++|..|+..|+|..++ |+.+
T Consensus 188 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l 220 (229)
T 2adc_A 188 DRKMALIQMGSVEEAVQALIDLHNHDLGENHHL 220 (229)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeE
Confidence 3569999999999999999999999999 8844
No 9
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=2.6e-31 Score=212.77 Aligned_cols=176 Identities=22% Similarity=0.384 Sum_probs=141.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhc----C-------CeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCC
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKY----G-------PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G-------~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g 72 (299)
..+++|||+|||+++|+++|.++|+.| | .|..+.+. .++|||||+|.+.++|.+|+ .|||..|.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---TTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 468999999999999999999999999 5 66666664 56899999999999999999 799999999
Q ss_pred ceEEEEEccCCCCCCCCCCCC-CCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----C
Q 022301 73 HRLRVELAHGGRGRSSSDRHS-SHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----T 147 (299)
Q Consensus 73 ~~i~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~ 147 (299)
+.|.|.++............. ................+|||+|||..+++++|.++|.+||.|..+.+..+... |
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g 157 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 157 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEE
T ss_pred ceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcce
Confidence 999999987654332211111 11111112223456789999999999999999999999999999999988643 5
Q ss_pred EEEEEecChhhHHHHHHhcCCCeecCceeeEEEEeccccc
Q 022301 148 TGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (299)
Q Consensus 148 ~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~~~~~~ 187 (299)
||||+|.+.++|..|+..|||..|+|+ .+.+....+
T Consensus 158 ~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~v~~a~~ 193 (198)
T 2yh0_A 158 YAFCEYVDINVTDQAIAGLNGMQLGDK----KLLVQRASV 193 (198)
T ss_dssp EEEEEESSSSHHHHHHHHHTTCEETTE----ECEEEESCC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCE----EEEEEECCC
Confidence 999999999999999999999999998 445444433
No 10
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.3e-31 Score=217.35 Aligned_cols=164 Identities=20% Similarity=0.321 Sum_probs=137.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
+.++|||+|||.++|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|..|+..||+..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 458999999999999999999999999999999954 46789999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChh
Q 022301 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYD 157 (299)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~ 157 (299)
......... ...........+|||.|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.+
T Consensus 107 ~~~~~~~~~--------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~ 178 (216)
T 2qfj_A 107 NIGQAQPII--------DQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQ 178 (216)
T ss_dssp CCGGGHHHH--------HHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred Cccccchhh--------hhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHH
Confidence 432100000 00000123457999999999999999999999999999999998854 359999999999
Q ss_pred hHHHHHHhcCCCeecCcee
Q 022301 158 DMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 158 ~a~~a~~~l~g~~~~g~~~ 176 (299)
+|..|+..|||..|+|+.+
T Consensus 179 ~A~~A~~~l~g~~~~g~~i 197 (216)
T 2qfj_A 179 SSQDAVSSMNLFDLGGQYL 197 (216)
T ss_dssp HHHHHHHHHTTCBCSSSBC
T ss_pred HHHHHHHHccCCEeCCcEE
Confidence 9999999999999999954
No 11
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=2.4e-31 Score=212.96 Aligned_cols=170 Identities=17% Similarity=0.261 Sum_probs=139.5
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 022301 5 ASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (299)
Q Consensus 5 ~~~~l~V~nLp~-~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 83 (299)
.+++|||+|||+ ++++++|.++|+.||.|..|.|..+. +|||||+|.+.++|..|+..|||..|.|+.|.|.++...
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 468999999999 99999999999999999999997654 789999999999999999999999999999999998755
Q ss_pred CCCCCCCCCCC----------------CCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEeCCCC
Q 022301 84 RGRSSSDRHSS----------------HSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSG 146 (299)
Q Consensus 84 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~~~~~~~~ 146 (299)
........... ............+..+|||.|||..+++++|.++|..|| .|..+.+..+. .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-~ 158 (198)
T 1qm9_A 80 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-R 158 (198)
T ss_dssp SCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-S
T ss_pred CcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-C
Confidence 32211100000 000001111234578999999999999999999999999 99999986643 5
Q ss_pred CEEEEEecChhhHHHHHHhcCCCeec-Cceee
Q 022301 147 TTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSR 177 (299)
Q Consensus 147 ~~~fv~f~~~~~a~~a~~~l~g~~~~-g~~~~ 177 (299)
|+|||+|.+.++|..|+..|||..++ |+.+.
T Consensus 159 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 190 (198)
T 1qm9_A 159 KMALIQMGSVEEAVQALIDLHNHDLGENHHLR 190 (198)
T ss_dssp SCEEEECSSHHHHHHHHHHHTSSCCSSCCSCC
T ss_pred cEEEEEeCCHHHHHHHHHHhcCCccCCCCeEE
Confidence 79999999999999999999999999 87553
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.98 E-value=2.3e-31 Score=208.24 Aligned_cols=150 Identities=23% Similarity=0.439 Sum_probs=133.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhc----C-------CeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCC
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKY----G-------PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G-------~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g 72 (299)
+++++|||+|||+++|+++|.++|+.| | .|..+.+. ..+|||||+|.+.++|..|+ .|||..|.|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~---~~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE---TTTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec---CCCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 467999999999999999999999999 6 77777775 45899999999999999999 799999999
Q ss_pred ceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CE
Q 022301 73 HRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TT 148 (299)
Q Consensus 73 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~ 148 (299)
+.|.|.++..... .....+|+|+|||..+++++|.++|.+||.|..+.+..++.. ||
T Consensus 78 ~~i~v~~~~~~~~-------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~ 138 (172)
T 2g4b_A 78 QSLKIRRPHDYQP-------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 138 (172)
T ss_dssp EECEEECCSSCCC-------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEE
T ss_pred ceeeecCCcccCC-------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceE
Confidence 9999998654321 123579999999999999999999999999999999988643 59
Q ss_pred EEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 149 GIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 149 ~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
|||+|.+.++|..|+..|||..++|+.+
T Consensus 139 afV~f~~~~~A~~A~~~l~g~~~~g~~l 166 (172)
T 2g4b_A 139 AFCEYVDINVTDQAIAGLNGMQLGDKKL 166 (172)
T ss_dssp EEEEESSTTHHHHHHHHHTTCEETTEEC
T ss_pred EEEEeCCHHHHHHHHHHcCCCEECCeEE
Confidence 9999999999999999999999999854
No 13
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.98 E-value=2e-31 Score=209.13 Aligned_cols=151 Identities=17% Similarity=0.340 Sum_probs=132.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCC-----CCCceEEEEecChHHHHHHHHhcCCCCCC---CceEE
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP-----RPPGYAFVEFEEARDAEDAIRGRDGYDFD---GHRLR 76 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~-----~~~g~afV~F~~~e~A~~A~~~l~~~~~~---g~~i~ 76 (299)
++++|||+|||+++|+++|.++|+.||+|..|.|..+. .++|||||+|.+.++|..|+..|||..+. +..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999995432 56899999999999999999999998776 67788
Q ss_pred EEEccCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC---CEEEEEe
Q 022301 77 VELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDY 153 (299)
Q Consensus 77 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~---~~~fv~f 153 (299)
+.++..... ......+|||+|||..+++++|+++|.+||.|..+.+..+..+ |||||+|
T Consensus 82 ~~~~~~~~~------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f 143 (175)
T 3nmr_A 82 MKPADSEKN------------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTF 143 (175)
T ss_dssp EEECGGGCC------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEE
T ss_pred Ecccccccc------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEE
Confidence 887654331 2235679999999999999999999999999999999988653 4999999
Q ss_pred cChhhHHHHHHhcCCCeecC
Q 022301 154 TNYDDMKHAIKKLDDSEFRN 173 (299)
Q Consensus 154 ~~~~~a~~a~~~l~g~~~~g 173 (299)
.+.++|..|++.|||..+.+
T Consensus 144 ~~~~~A~~A~~~l~g~~~~~ 163 (175)
T 3nmr_A 144 TTRAMAQTAIKAMHQAQTME 163 (175)
T ss_dssp SSHHHHHHHHHHHTTSCCCT
T ss_pred CCHHHHHHHHHHhcCCcccC
Confidence 99999999999999988764
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.98 E-value=1.2e-32 Score=216.26 Aligned_cols=160 Identities=17% Similarity=0.245 Sum_probs=136.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEe--ecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~--~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
..++++|||+|||.++|+++|+++|..||.|..+.+ ..++.++|||||+|.+.++|..|+. |||..|.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 467899999999999999999999999998766333 3456789999999999999999996 9999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHH
Q 022301 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMK 160 (299)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~ 160 (299)
..... .......+|||+|||..+++++|.++|..||.|..+ .......|||||+|.+.++|.
T Consensus 89 ~~~~~-----------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~ 150 (175)
T 1fje_B 89 KGRDS-----------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAE 150 (175)
T ss_dssp CCSSC-----------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHH
T ss_pred CCccc-----------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHH
Confidence 65432 223356899999999999999999999999999877 333345579999999999999
Q ss_pred HHHHhcCCCeecCceeeEEEEeccc
Q 022301 161 HAIKKLDDSEFRNAFSRAYVRVREY 185 (299)
Q Consensus 161 ~a~~~l~g~~~~g~~~~~~~~~~~~ 185 (299)
.|+..|||..|+|+ .+.+..+
T Consensus 151 ~A~~~l~g~~~~g~----~i~v~~a 171 (175)
T 1fje_B 151 KNLEEKQGAEIDGR----SVSLYYT 171 (175)
T ss_dssp HHHHHHTEEEETTE----EEEEEEC
T ss_pred HHHHHhCCCEECCe----EEEEEec
Confidence 99999999999998 4555444
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=7.3e-32 Score=210.09 Aligned_cols=151 Identities=18% Similarity=0.362 Sum_probs=133.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
+++++|||+|||+++|+++|.++|+.||+|..|.|.. ++.++|||||+|.+.++|..|+.. +..+.|+.|.|.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 4689999999999999999999999999999999954 467899999999999999999994 56888999999887
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecCh
Q 022301 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNY 156 (299)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~ 156 (299)
.... ......+|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.
T Consensus 79 ~~~~-------------------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 139 (167)
T 2cjk_A 79 IPRD-------------------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSA 139 (167)
T ss_dssp CCHH-------------------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSH
T ss_pred cchh-------------------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCH
Confidence 5321 112346899999999999999999999999999999988754 35999999999
Q ss_pred hhHHHHHHhcCCCeecCcee
Q 022301 157 DDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 157 ~~a~~a~~~l~g~~~~g~~~ 176 (299)
++|..|++ ++|..++|+.+
T Consensus 140 ~~a~~A~~-~~~~~~~g~~i 158 (167)
T 2cjk_A 140 DAVDRVCQ-NKFIDFKDRKI 158 (167)
T ss_dssp HHHHHHHH-CSEECSSSSCE
T ss_pred HHHHHHHh-CCCEEeCCeEE
Confidence 99999998 89999999944
No 16
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=4.1e-30 Score=218.16 Aligned_cols=165 Identities=15% Similarity=0.249 Sum_probs=138.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcC-CeeEEEeecC--CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~i~~~~~--~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
+.++|||+|||+++|+++|.++|..|| +|..|.|..+ +.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 9999999543 5678999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEEeCCC-----CCEEEEEecC
Q 022301 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGS-----GTTGIVDYTN 155 (299)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~~~~~~~~~-----~~~~fv~f~~ 155 (299)
+....... ........+|||.|||.. +++++|.++|..||.|..+.++.+.. .|||||+|.+
T Consensus 196 ~~~~~~~~------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~ 263 (292)
T 2ghp_A 196 PLEKSKRT------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFEN 263 (292)
T ss_dssp CC---------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESS
T ss_pred CCcccccc------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCC
Confidence 54432111 123345689999999999 99999999999999999999988654 4699999999
Q ss_pred hhhHHHHHHhcCCCeecCceeeEEEEecccc
Q 022301 156 YDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (299)
Q Consensus 156 ~~~a~~a~~~l~g~~~~g~~~~~~~~~~~~~ 186 (299)
.++|..|+ .|||..|+|+ .+.+....
T Consensus 264 ~~~A~~A~-~l~g~~~~g~----~i~V~~a~ 289 (292)
T 2ghp_A 264 KDSAERAL-QMNRSLLGNR----EISVSLAD 289 (292)
T ss_dssp HHHHHHHG-GGTTEEETTE----EEEEEECC
T ss_pred HHHHHHHH-HhcCCEECCc----EEEEEEec
Confidence 99999999 9999999998 45544443
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=2.3e-29 Score=212.68 Aligned_cols=144 Identities=24% Similarity=0.326 Sum_probs=132.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 83 (299)
.++++|||+|||.++|+++|.++|+.|| |..|.+ +.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~-- 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP-- 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE---ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC--
Confidence 3679999999999999999999999999 999998 3668999999999999999999999999999999999853
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhH
Q 022301 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDM 159 (299)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a 159 (299)
...+|||+|||..+++++|.++|..||.|..+.++.+... |||||+|.+.++|
T Consensus 94 -----------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a 150 (284)
T 3smz_A 94 -----------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSA 150 (284)
T ss_dssp -----------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred -----------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHH
Confidence 2369999999999999999999999999999999987644 4999999999999
Q ss_pred HHHHHhcCCCeecCcee
Q 022301 160 KHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 160 ~~a~~~l~g~~~~g~~~ 176 (299)
..|+..|+|..++|+.+
T Consensus 151 ~~A~~~l~~~~~~g~~i 167 (284)
T 3smz_A 151 ARAKSDLLGKPLGPRTL 167 (284)
T ss_dssp HHHHHHHTTCEETTEEC
T ss_pred HHHHHHhCCCEeCCcEE
Confidence 99999999999999844
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=2e-29 Score=213.09 Aligned_cols=157 Identities=18% Similarity=0.255 Sum_probs=139.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.+.++|||+|||+++|+++|.++|+.||.|..+.+.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4678999999999999999999999999999999853 4667899999999999999999889999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCC-CHHHHHHHHHhcCCeeEEEEEeCCCC---CEEEEEecCh
Q 022301 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNY 156 (299)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~-~~~~l~~~f~~~G~v~~~~~~~~~~~---~~~fv~f~~~ 156 (299)
...... .......+|||.|||..+ ++++|.++|..||.|..+.++.+..+ |+|||+|.+.
T Consensus 173 ~~~~~~----------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~ 236 (284)
T 3smz_A 173 DAGQLT----------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETA 236 (284)
T ss_dssp CGGGCC----------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSH
T ss_pred CCCCCC----------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCH
Confidence 654321 223456899999999995 99999999999999999999987543 5999999999
Q ss_pred hhHHHHHHhcCCCeecCcee
Q 022301 157 DDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 157 ~~a~~a~~~l~g~~~~g~~~ 176 (299)
++|..|+..|||..|+|+.+
T Consensus 237 ~~A~~A~~~l~g~~~~g~~l 256 (284)
T 3smz_A 237 EMAEEAQQQADGLSLGGSHL 256 (284)
T ss_dssp HHHHHHHHHHTTCEETTEEC
T ss_pred HHHHHHHHHhCCCccCCeEE
Confidence 99999999999999999944
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1.5e-29 Score=211.02 Aligned_cols=140 Identities=28% Similarity=0.431 Sum_probs=127.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 83 (299)
.+.++|||+|||+++|+++|.++|+.||.|..|.|. ..+|||||+|.+.++|..|+..|||..|.|+.|.|.++..
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~---~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~- 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN---RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH- 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe---CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc-
Confidence 456899999999999999999999999999999996 4479999999999999999999999999999999999852
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC---CEEEEEecChhhHH
Q 022301 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMK 160 (299)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~---~~~fv~f~~~~~a~ 160 (299)
..+|||+|||..+++++|.++|..||.|..+.++.+..+ |||||+|.+.++|.
T Consensus 96 ------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~ 151 (261)
T 3sde_A 96 ------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPAR 151 (261)
T ss_dssp ------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHH
T ss_pred ------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHH
Confidence 368999999999999999999999999999999988543 59999999999999
Q ss_pred HHHHhcCCCee
Q 022301 161 HAIKKLDDSEF 171 (299)
Q Consensus 161 ~a~~~l~g~~~ 171 (299)
.|+..|++..+
T Consensus 152 ~A~~~l~~~~~ 162 (261)
T 3sde_A 152 KALERCGDGAF 162 (261)
T ss_dssp HHHHHHHHSCE
T ss_pred HHHHHhcCCeE
Confidence 99999955444
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.8e-29 Score=214.22 Aligned_cols=146 Identities=21% Similarity=0.272 Sum_probs=129.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC-CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~-~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
.++++|||+|||+++|+++|.++|+.||+|..|.|..+ ..++|||||+|.+.++|..|+. |||..|.|+.|.|.++.
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~- 116 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLT- 116 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECC-
Confidence 56899999999999999999999999999999999654 3357999999999999999996 99999999999999862
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEeCC---CCCEEEEEecChhh
Q 022301 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDG---SGTTGIVDYTNYDD 158 (299)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~~~~~~---~~~~~fv~f~~~~~ 158 (299)
..+|||+|||..+++++|.++|..|| .|..+.++.+. ..|||||+|.+.++
T Consensus 117 -------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~ 171 (292)
T 2ghp_A 117 -------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKED 171 (292)
T ss_dssp -------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHH
T ss_pred -------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHH
Confidence 47999999999999999999999999 99999998765 45799999999999
Q ss_pred HHHHHHhcCCCeecCcee
Q 022301 159 MKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 159 a~~a~~~l~g~~~~g~~~ 176 (299)
|..|+..|+|..|.|+.+
T Consensus 172 a~~A~~~l~g~~~~g~~l 189 (292)
T 2ghp_A 172 ARYCVEKLNGLKIEGYTL 189 (292)
T ss_dssp HHHHHHHHTTCEETTEEC
T ss_pred HHHHHHHhCCCEeCCcEE
Confidence 999999999999999844
No 21
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.92 E-value=4.2e-25 Score=195.67 Aligned_cols=161 Identities=16% Similarity=0.172 Sum_probs=101.6
Q ss_pred CCCCCCCHHHHHHHhhhcCCeeEEEe----ecCC-CCCceE-----EEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 13 NLPGDIREREVEDLFYKYGPIAHIDL----KIPP-RPPGYA-----FVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 13 nLp~~~t~~~l~~~F~~~G~v~~i~~----~~~~-~~~g~a-----fV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
.||++ |.+||.++|+|..|.. .... ...+|+ |++|....++..++..++...+.+..........
T Consensus 4 ~lPp~-----L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~ 78 (437)
T 3pgw_S 4 FLPPN-----LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERR 78 (437)
T ss_pred cCCcc-----HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHH
Confidence 46665 7899999999988733 1111 223344 7888776666555543333222211000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhh
Q 022301 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDD 158 (299)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~ 158 (299)
.. ........+...........+..+|||+|||..+++++|.++|.+||.|..|.|+.+.. .|||||+|.+.++
T Consensus 79 ~~--~~~~~~~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~ 156 (437)
T 3pgw_S 79 QQ--EVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERD 156 (437)
T ss_pred HH--HHHHhhhhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHH
Confidence 00 00000000000001112234567999999999999999999999999999999987753 4699999999999
Q ss_pred HHHHHHhcCCCeecCceeeEEE
Q 022301 159 MKHAIKKLDDSEFRNAFSRAYV 180 (299)
Q Consensus 159 a~~a~~~l~g~~~~g~~~~~~~ 180 (299)
|+.||..|||..|+|..+.+.+
T Consensus 157 A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 157 MHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred HHHHHHHcCCCEECCEEEEEEE
Confidence 9999999999999999654443
No 22
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.91 E-value=1.9e-23 Score=185.06 Aligned_cols=81 Identities=36% Similarity=0.644 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.+.++|||+|||++||+++|.++|.+||+|..|.|+. ++.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4668999999999999999999999999999999954 5678999999999999999999999999999999999999
Q ss_pred cCCC
Q 022301 81 HGGR 84 (299)
Q Consensus 81 ~~~~ 84 (299)
....
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 7544
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.91 E-value=2.6e-24 Score=156.35 Aligned_cols=109 Identities=21% Similarity=0.352 Sum_probs=72.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC-CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~-~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 83 (299)
.+++|||+|||+++|+++|+++|+.||+|.+|.|..+ +.++|||||+|.+.++|..|+..|||..|.|+.|.|.++...
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 4678999999999999999999999999999999554 446899999999999999999999999999999999998754
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHH
Q 022301 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQD 124 (299)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 124 (299)
...... .........+|||+|||+.+|++.
T Consensus 84 ~~~~~~-----------~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAE-----------LGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC---------------------------------------
T ss_pred cccccc-----------cccccCCCCceEeCCCCCCccccc
Confidence 321111 111223446799999999998763
No 24
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.87 E-value=1.4e-22 Score=147.39 Aligned_cols=106 Identities=29% Similarity=0.454 Sum_probs=95.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
...++++|||+|||.++|+++|.++|+.||.|..|.|..++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 45788999999999999999999999999999999998888889999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCC
Q 022301 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD 134 (299)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~ 134 (299)
..... .+++...++++|.++|.+||.
T Consensus 84 ~~~~~---------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 84 ANRAF---------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHHT---------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred CChhh---------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 43211 456667789999999999984
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=5.6e-22 Score=139.77 Aligned_cols=78 Identities=28% Similarity=0.488 Sum_probs=72.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
..++|||+|||+++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.|++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 457899999999999999999999999999999954 46788999999999999999999999999999999999986
Q ss_pred C
Q 022301 82 G 82 (299)
Q Consensus 82 ~ 82 (299)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 3
No 26
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.86 E-value=1.9e-21 Score=138.04 Aligned_cols=100 Identities=43% Similarity=0.634 Sum_probs=83.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCCCCC
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~ 86 (299)
++|||+|||+++|+++|+++|++||+|..|.|..+ ++|||||+|.+.++|..|+..|||..|.|+.|.|.++......
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 58999999999999999999999999999999766 6899999999999999999999999999999999999865532
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccEEEEeCCC
Q 022301 87 SSSDRHSSHSSGRGRGVSRRSEYRVLVTGLP 117 (299)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 117 (299)
..... .+.......+|||+||+
T Consensus 79 ~~~~~---------~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 79 SRFDR---------PPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SCCCS---------CCCSCCCCSCCCSCCCC
T ss_pred ccCCC---------CCccccCCCceecCCCC
Confidence 21111 11122345689999986
No 27
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.85 E-value=2.9e-21 Score=129.54 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
-.+..|||+||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.++++|..|+..||+..|.|+.|.|+++
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4578999999999999999999999999999999974 6999999999999999999999999999999999887
No 28
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.85 E-value=5.8e-21 Score=145.51 Aligned_cols=130 Identities=17% Similarity=0.156 Sum_probs=105.2
Q ss_pred CCCCceEEEEecChHHHHHHHHhc-CCCCCCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCC
Q 022301 42 PRPPGYAFVEFEEARDAEDAIRGR-DGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSA 120 (299)
Q Consensus 42 ~~~~g~afV~F~~~e~A~~A~~~l-~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 120 (299)
...+|+++|+|.+.++|++|+..| ||..+.| .|.+.++........... ...............+|||+|||..+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~V~nl~~~~ 85 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH---HHHHHMHRDSCPLDCKVYVGNLGNNG 85 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS---SCCCCSCSSSSTTSCEEEEESCCSCC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc---cccccccccCCCCCCEEEEeCCCCCC
Confidence 356899999999999999999999 9999999 999998754221110000 00011122344567899999999999
Q ss_pred CHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 121 SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 121 ~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
++++|.++|.+||.|..+.++.+ ..|||||+|.+.++|..|+..|||..|+|+.+
T Consensus 86 t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 140 (150)
T 2i2y_A 86 NKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCGCRV 140 (150)
T ss_dssp SCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCC
T ss_pred CHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 99999999999999999999887 46799999999999999999999999999954
No 29
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.85 E-value=2.1e-20 Score=135.73 Aligned_cols=85 Identities=27% Similarity=0.509 Sum_probs=78.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEE
Q 022301 1 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (299)
Q Consensus 1 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 78 (299)
|...++++|||+|||.++|+++|.++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.
T Consensus 2 ~e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp CTTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4567889999999999999999999999999999999965 56788999999999999999999999999999999999
Q ss_pred EccCCCC
Q 022301 79 LAHGGRG 85 (299)
Q Consensus 79 ~~~~~~~ 85 (299)
++.....
T Consensus 82 ~a~~~~~ 88 (116)
T 2fy1_A 82 QAKKPSF 88 (116)
T ss_dssp ECCCSSC
T ss_pred ECCCCCC
Confidence 9986554
No 30
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8e-21 Score=136.69 Aligned_cols=83 Identities=59% Similarity=1.044 Sum_probs=77.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
...++++|||+|||.++|+++|+++|..||+|..|.|..++.++|||||+|.+.++|+.|+..||+..|.|+.|.|.++.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 34678999999999999999999999999999999998888889999999999999999999999999999999999997
Q ss_pred CCC
Q 022301 82 GGR 84 (299)
Q Consensus 82 ~~~ 84 (299)
...
T Consensus 98 ~~~ 100 (109)
T 1x4a_A 98 SGR 100 (109)
T ss_dssp CCC
T ss_pred cCC
Confidence 654
No 31
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.7e-21 Score=135.30 Aligned_cols=81 Identities=20% Similarity=0.277 Sum_probs=73.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCC--CCCCCceEEEEE
Q 022301 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG--YDFDGHRLRVEL 79 (299)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~--~~~~g~~i~v~~ 79 (299)
+..+.++|||+|||+++|+++|+++|++||+|.+|.|..+ +|||||+|.+.++|..|+..|++ ..|.|+.|.|.+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 4578999999999999999999999999999999999753 79999999999999999998864 789999999999
Q ss_pred ccCCCC
Q 022301 80 AHGGRG 85 (299)
Q Consensus 80 ~~~~~~ 85 (299)
+.....
T Consensus 89 A~~~~~ 94 (105)
T 1sjq_A 89 SNHKEL 94 (105)
T ss_dssp CSSSSC
T ss_pred cCCCCC
Confidence 976554
No 32
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.85 E-value=2.7e-20 Score=143.12 Aligned_cols=136 Identities=15% Similarity=0.075 Sum_probs=99.1
Q ss_pred CCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCH
Q 022301 43 RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASW 122 (299)
Q Consensus 43 ~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~ 122 (299)
..+|||||+|.+.++|++|+..+++....+..+.+........... ...............+|||+|||..+++
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~v~nl~~~~~~ 84 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE------GSHHHHHHMDVEGMTSLKVDNLTYRTSP 84 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC------CCCCSSCCCCCCBCCEEEEESCCTTCCH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc------cccccccccCCCCCCEEEEeCCCCCCCH
Confidence 5789999999999999999988876433333333322111000000 0000111223355689999999999999
Q ss_pred HHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCceeeEEEEecccccC
Q 022301 123 QDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHR 188 (299)
Q Consensus 123 ~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~~~~~~~ 188 (299)
++|.++|..||.|..+.++.+.. .|||||+|.+.++|+.|+..|||..|+|+ .+.+......
T Consensus 85 ~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~v~~a~~~ 150 (158)
T 2kn4_A 85 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR----ELRVQMARYG 150 (158)
T ss_dssp HHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSS----EEEEEEECCS
T ss_pred HHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe----EEEEEECCCC
Confidence 99999999999999999988753 36999999999999999999999999999 5555554443
No 33
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=2.4e-21 Score=134.45 Aligned_cols=79 Identities=19% Similarity=0.344 Sum_probs=71.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcC-CeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcC-CCCCCCceEEEEEc
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRD-GYDFDGHRLRVELA 80 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~-~~~~~g~~i~v~~~ 80 (299)
+++|||+|||+++|+++|.++|++|| +|.+|.|.. ++.++|||||+|.+.++|..|+..|+ +..|.|+.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 58999999999999999999999999 899999954 47889999999999999999999774 56799999999998
Q ss_pred cCCC
Q 022301 81 HGGR 84 (299)
Q Consensus 81 ~~~~ 84 (299)
.+..
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7654
No 34
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.84 E-value=9.3e-21 Score=131.89 Aligned_cols=78 Identities=22% Similarity=0.313 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCC--CCCceEEEEEc
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD--FDGHRLRVELA 80 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~--~~g~~i~v~~~ 80 (299)
..|+++|||+|||.++|+++|.++|++||+|.+|.|. ..+|||||+|.+.++|..|+..||+.. |.|+.|.|.|+
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~---~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM---PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE---cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 3689999999999999999999999999999999997 357999999999999999999999876 78999999999
Q ss_pred cCC
Q 022301 81 HGG 83 (299)
Q Consensus 81 ~~~ 83 (299)
+..
T Consensus 95 ~~k 97 (100)
T 3r27_A 95 TSQ 97 (100)
T ss_dssp SCS
T ss_pred ccc
Confidence 754
No 35
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=7.4e-21 Score=136.57 Aligned_cols=80 Identities=19% Similarity=0.338 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
..+.++|||+|||+++|+++|.++|++||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 46789999999999999999999999999999999954 367889999999999999999999999999999999999
Q ss_pred ccC
Q 022301 80 AHG 82 (299)
Q Consensus 80 ~~~ 82 (299)
+..
T Consensus 83 a~~ 85 (110)
T 3s8s_A 83 DIK 85 (110)
T ss_dssp CST
T ss_pred CCC
Confidence 853
No 36
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.1e-20 Score=131.19 Aligned_cols=83 Identities=34% Similarity=0.509 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
..++++|||+|||.++|+++|+++|..||+|..|.|.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 46789999999999999999999999999999999954 467889999999999999999998999999999999999
Q ss_pred ccCCCC
Q 022301 80 AHGGRG 85 (299)
Q Consensus 80 ~~~~~~ 85 (299)
+.....
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 986654
No 37
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=4.7e-20 Score=129.25 Aligned_cols=83 Identities=30% Similarity=0.508 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
..++++|||+|||.++|+++|+++|+.||+|..|.|..+ +.++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 467899999999999999999999999999999999654 67889999999999999999999999999999999999
Q ss_pred ccCCCC
Q 022301 80 AHGGRG 85 (299)
Q Consensus 80 ~~~~~~ 85 (299)
+.....
T Consensus 82 a~~~~~ 87 (95)
T 2dnz_A 82 VTERLD 87 (95)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 976543
No 38
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=137.43 Aligned_cols=82 Identities=18% Similarity=0.395 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVE----DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 78 (299)
..++++|||+|||+.+++++|+ ++|++||+|..|.+..++.++|||||+|.+.++|..|+..|||..|.|+.|.|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3578999999999999999866 799999999999998888899999999999999999999999999999999999
Q ss_pred EccCCC
Q 022301 79 LAHGGR 84 (299)
Q Consensus 79 ~~~~~~ 84 (299)
|+....
T Consensus 106 ~a~~~~ 111 (127)
T 2a3j_A 106 FSETPQ 111 (127)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 987543
No 39
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.3e-20 Score=134.64 Aligned_cols=81 Identities=19% Similarity=0.273 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcC--CCCCCCceEEEEEc
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRLRVELA 80 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~--~~~~~g~~i~v~~~ 80 (299)
..++++|||+|||+++|+++|+++|++||.|..|.|..+ +|||||+|.+.++|.+|+..|+ +..|.|+.|.|.++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 467899999999999999999999999999999999753 7999999999999999999887 46899999999999
Q ss_pred cCCCCC
Q 022301 81 HGGRGR 86 (299)
Q Consensus 81 ~~~~~~ 86 (299)
......
T Consensus 105 ~~k~~~ 110 (119)
T 2ad9_A 105 NHKELK 110 (119)
T ss_dssp SSSSCC
T ss_pred cCCCCC
Confidence 765543
No 40
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.2e-20 Score=132.14 Aligned_cols=82 Identities=37% Similarity=0.577 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.++++|||+|||.++|+++|+++|..||+|..|.|..+ +.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 57899999999999999999999999999999999653 678899999999999999999999999999999999999
Q ss_pred cCCCC
Q 022301 81 HGGRG 85 (299)
Q Consensus 81 ~~~~~ 85 (299)
.....
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 76543
No 41
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=7.3e-21 Score=132.51 Aligned_cols=79 Identities=20% Similarity=0.345 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCC--eeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCC----CCCce
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGP--IAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYD----FDGHR 74 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~--v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~----~~g~~ 74 (299)
..=+||||+|||+++|+++|.++|++||. |.+|.+.. ++.++|||||+|.+.++|..|+..|||.. |.|+.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 45689999999999999999999999995 67888854 47889999999999999999999999974 88999
Q ss_pred EEEEEccC
Q 022301 75 LRVELAHG 82 (299)
Q Consensus 75 i~v~~~~~ 82 (299)
|.|.|++.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999864
No 42
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.9e-20 Score=132.09 Aligned_cols=83 Identities=27% Similarity=0.460 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec------CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI------PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~------~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~ 76 (299)
+.++++|||+|||.++|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 47899999999999999999999999999999999954 225679999999999999999999999999999999
Q ss_pred EEEccCCCC
Q 022301 77 VELAHGGRG 85 (299)
Q Consensus 77 v~~~~~~~~ 85 (299)
|.++.....
T Consensus 82 V~~a~~~~~ 90 (98)
T 2cpf_A 82 VRISERATK 90 (98)
T ss_dssp EECSSCSSC
T ss_pred EEEccCCCC
Confidence 999976553
No 43
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.83 E-value=2.6e-20 Score=130.78 Aligned_cols=80 Identities=29% Similarity=0.615 Sum_probs=74.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
|+++|||+|||.++++++|.++|+.||.|..|.|..+ +.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 6899999999999999999999999999999999654 6778999999999999999999999999999999999997
Q ss_pred CCC
Q 022301 82 GGR 84 (299)
Q Consensus 82 ~~~ 84 (299)
...
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 644
No 44
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.3e-20 Score=130.57 Aligned_cols=83 Identities=34% Similarity=0.506 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC-CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~-~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
..+.++|||+|||+++|+++|+++|+.||+|..|.|..+ ..++|||||+|.+.++|..|+..||+..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 467899999999999999999999999999999999664 3468999999999999999999999999999999999997
Q ss_pred CCCC
Q 022301 82 GGRG 85 (299)
Q Consensus 82 ~~~~ 85 (299)
....
T Consensus 92 ~~~~ 95 (103)
T 2cqi_A 92 TPSS 95 (103)
T ss_dssp CTTC
T ss_pred CCcc
Confidence 6543
No 45
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=8.1e-20 Score=129.02 Aligned_cols=82 Identities=24% Similarity=0.530 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
..++++|||+|||.++|+++|+++|..||+|..|.|..+ +.++|||||+|.+.++|..|+. ||+..|.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 467899999999999999999999999999999999653 6688999999999999999999 999999999999999
Q ss_pred ccCCCC
Q 022301 80 AHGGRG 85 (299)
Q Consensus 80 ~~~~~~ 85 (299)
+.....
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 976543
No 46
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.2e-20 Score=130.77 Aligned_cols=83 Identities=34% Similarity=0.593 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
..++++|||+|||+++|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|..|+..||+..|.|+.|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 36789999999999999999999999999999999965 456789999999999999999999999999999999999
Q ss_pred ccCCCC
Q 022301 80 AHGGRG 85 (299)
Q Consensus 80 ~~~~~~ 85 (299)
+.....
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 976553
No 47
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.1e-20 Score=129.67 Aligned_cols=80 Identities=20% Similarity=0.264 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhc--CCCCCCCceEEEEEc
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR--DGYDFDGHRLRVELA 80 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l--~~~~~~g~~i~v~~~ 80 (299)
..++++|||+|||+++|+++|.++|++||.|..|.|..+ +|||||+|.+.++|..|+..| ++..|.|+.|.|.|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 468899999999999999999999999999999998743 899999999999999999976 467899999999999
Q ss_pred cCCCC
Q 022301 81 HGGRG 85 (299)
Q Consensus 81 ~~~~~ 85 (299)
.....
T Consensus 89 ~~~~~ 93 (101)
T 2cq1_A 89 NHKEL 93 (101)
T ss_dssp SCSSC
T ss_pred CcccC
Confidence 76554
No 48
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.8e-20 Score=132.18 Aligned_cols=83 Identities=34% Similarity=0.578 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
..+.++|||+|||.++|+++|+++|+.||+|..|.|..+ +.++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 368899999999999999999999999999999999554 67899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 022301 80 AHGGRG 85 (299)
Q Consensus 80 ~~~~~~ 85 (299)
+.....
T Consensus 89 a~~~~~ 94 (102)
T 2cqb_A 89 AKPMRI 94 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 976553
No 49
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4e-20 Score=131.59 Aligned_cols=84 Identities=25% Similarity=0.397 Sum_probs=76.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec-CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~-~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
...+.++|||+|||+++|+++|+++|..||+|..|.|.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 346889999999999999999999999999999999955 4667899999999999999999999999999999999999
Q ss_pred cCCCC
Q 022301 81 HGGRG 85 (299)
Q Consensus 81 ~~~~~ 85 (299)
.....
T Consensus 91 ~~~~~ 95 (103)
T 2d9p_A 91 QRKEE 95 (103)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 76553
No 50
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.83 E-value=2.3e-20 Score=128.02 Aligned_cols=79 Identities=34% Similarity=0.631 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
..++++|||+|||+++++++|+++|++||+|..|.+.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 46889999999999999999999999999999999943 466789999999999999999999999999999999998
Q ss_pred cc
Q 022301 80 AH 81 (299)
Q Consensus 80 ~~ 81 (299)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 51
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.83 E-value=3.4e-20 Score=129.16 Aligned_cols=84 Identities=27% Similarity=0.461 Sum_probs=76.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec-CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~-~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
...+.++|||+|||.++++++|+++|..||+|..|.|.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 357889999999999999999999999999999999964 4667899999999999999999999999999999999999
Q ss_pred cCCCC
Q 022301 81 HGGRG 85 (299)
Q Consensus 81 ~~~~~ 85 (299)
.....
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 76543
No 52
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.5e-20 Score=130.06 Aligned_cols=81 Identities=21% Similarity=0.333 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 4 RASRTLYVGNLPGDIREREVE----DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
.+.++|||+|||.++++++|+ ++|++||+|..|.|..+...+|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 467899999999999999999 9999999999999976654489999999999999999999999999999999999
Q ss_pred ccCCC
Q 022301 80 AHGGR 84 (299)
Q Consensus 80 ~~~~~ 84 (299)
+....
T Consensus 87 a~~~~ 91 (96)
T 2dgx_A 87 ATGAS 91 (96)
T ss_dssp CCCSS
T ss_pred cCCCC
Confidence 97544
No 53
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.3e-20 Score=130.72 Aligned_cols=83 Identities=30% Similarity=0.467 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
..++++|||+|||.++|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|..|+..||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 36789999999999999999999999999999999955 467889999999999999999999999999999999999
Q ss_pred ccCCCC
Q 022301 80 AHGGRG 85 (299)
Q Consensus 80 ~~~~~~ 85 (299)
+.....
T Consensus 92 a~~~~~ 97 (105)
T 1x5u_A 92 ASAHNK 97 (105)
T ss_dssp TTTTSC
T ss_pred CCCCCc
Confidence 976543
No 54
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.8e-20 Score=131.86 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCC--CCCCceEEEEE
Q 022301 3 SRASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY--DFDGHRLRVEL 79 (299)
Q Consensus 3 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~--~~~g~~i~v~~ 79 (299)
..++++|||+|||+ ++|+++|.++|++||.|.+|.|.. .+|||||+|.+.++|..|+..||+. .|.|+.|.|.+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN---KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS---SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 46889999999999 999999999999999999999974 3689999999999999999998864 48999999999
Q ss_pred ccCCC
Q 022301 80 AHGGR 84 (299)
Q Consensus 80 ~~~~~ 84 (299)
+....
T Consensus 89 a~~~~ 93 (102)
T 1x4d_A 89 SQKYK 93 (102)
T ss_dssp ECCCT
T ss_pred CCCCC
Confidence 97544
No 55
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.4e-20 Score=129.65 Aligned_cols=83 Identities=25% Similarity=0.426 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEE-Eeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHI-DLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i-~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 78 (299)
+.++++|||+|||.++|+++|.++|+.||+|..| .|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4678999999999999999999999999999999 8854 46788999999999999999999999999999999999
Q ss_pred EccCCCC
Q 022301 79 LAHGGRG 85 (299)
Q Consensus 79 ~~~~~~~ 85 (299)
++.....
T Consensus 82 ~a~~~~~ 88 (96)
T 1x5t_A 82 YAFKKDS 88 (96)
T ss_dssp ESCCCCC
T ss_pred EecccCC
Confidence 9976543
No 56
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=4.6e-20 Score=129.04 Aligned_cols=78 Identities=23% Similarity=0.462 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.++++|||+|||.++++++|+++|+.||+|..|.|..+ +.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 57899999999999999999999999999999999654 667899999999999999999999999999999999997
Q ss_pred c
Q 022301 81 H 81 (299)
Q Consensus 81 ~ 81 (299)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 57
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.82 E-value=1.3e-20 Score=132.67 Aligned_cols=84 Identities=29% Similarity=0.538 Sum_probs=76.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH----HHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEE
Q 022301 1 MSSRASRTLYVGNLPGDIREREVE----DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (299)
Q Consensus 1 ~~~~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~ 76 (299)
|...++++|||+|||.++++++|. ++|++||.|..|.+..++.++|||||+|.+.++|..|+..|||..|.|+.|.
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 456889999999999999999999 9999999999999976677789999999999999999999999999999999
Q ss_pred EEEccCCC
Q 022301 77 VELAHGGR 84 (299)
Q Consensus 77 v~~~~~~~ 84 (299)
|.++....
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99987543
No 58
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=9e-20 Score=129.20 Aligned_cols=80 Identities=19% Similarity=0.205 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCC--CCCCCceEEEEEc
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG--YDFDGHRLRVELA 80 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~--~~~~g~~i~v~~~ 80 (299)
..++++|||+|||+++++++|+++|++||.|..|.|.. .+|||||+|.+.++|..|+..|++ ..|.|+.|.|.|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP---FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 36789999999999999999999999999999999974 379999999999999999998876 4599999999999
Q ss_pred cCCCC
Q 022301 81 HGGRG 85 (299)
Q Consensus 81 ~~~~~ 85 (299)
.....
T Consensus 89 ~~~~~ 93 (104)
T 1wex_A 89 TSKRI 93 (104)
T ss_dssp SSSSC
T ss_pred cCccc
Confidence 76543
No 59
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-19 Score=129.97 Aligned_cols=83 Identities=25% Similarity=0.462 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec----CCCCCceEEEEecChHHHHHHHHhc-CCCCCCCceEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI----PPRPPGYAFVEFEEARDAEDAIRGR-DGYDFDGHRLRV 77 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~----~~~~~g~afV~F~~~e~A~~A~~~l-~~~~~~g~~i~v 77 (299)
..++++|||+|||.++|+++|+++|..||+|..|.|.. ++.++|||||+|.+.++|..|+..| |+..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 46789999999999999999999999999999999944 4677899999999999999999999 999999999999
Q ss_pred EEccCCCC
Q 022301 78 ELAHGGRG 85 (299)
Q Consensus 78 ~~~~~~~~ 85 (299)
.++.....
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99976543
No 60
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-19 Score=128.89 Aligned_cols=83 Identities=24% Similarity=0.458 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC-CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~-~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
..+.++|||+|||+++|+++|+++|..||+|..|.|..+ ..++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 467899999999999999999999999999999999654 3468999999999999999999999999999999999997
Q ss_pred CCCC
Q 022301 82 GGRG 85 (299)
Q Consensus 82 ~~~~ 85 (299)
....
T Consensus 92 ~~~~ 95 (103)
T 2cq3_A 92 ARVM 95 (103)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 6553
No 61
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=6e-20 Score=129.96 Aligned_cols=82 Identities=24% Similarity=0.485 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
..+.++|||+|||.++|+++|.++|..||+|..|.|.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 35789999999999999999999999999999999954 3566799999999999999999999999999999999998
Q ss_pred cCCC
Q 022301 81 HGGR 84 (299)
Q Consensus 81 ~~~~ 84 (299)
.+..
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7543
No 62
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.82 E-value=1.1e-19 Score=132.01 Aligned_cols=84 Identities=25% Similarity=0.440 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
..+.++|||+|||.++|+++|+++|..||.|..|.|.. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 36789999999999999999999999999999999954 466789999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 022301 80 AHGGRGR 86 (299)
Q Consensus 80 ~~~~~~~ 86 (299)
+......
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9866543
No 63
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=2.9e-20 Score=128.12 Aligned_cols=80 Identities=26% Similarity=0.447 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
..+.++|||+|||.++++++|+++|+.||+|..|.+.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 35788999999999999999999999999999999954 466789999999999999999999999999999999999
Q ss_pred ccC
Q 022301 80 AHG 82 (299)
Q Consensus 80 ~~~ 82 (299)
+..
T Consensus 83 a~~ 85 (87)
T 3bs9_A 83 ATR 85 (87)
T ss_dssp EC-
T ss_pred cCC
Confidence 864
No 64
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=4.7e-20 Score=125.85 Aligned_cols=78 Identities=24% Similarity=0.454 Sum_probs=72.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
+.+|||+|||.++++++|.++|+.||+|..+.+.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 47899999999999999999999999999999954 467789999999999999999999999999999999999875
Q ss_pred C
Q 022301 83 G 83 (299)
Q Consensus 83 ~ 83 (299)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 65
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-19 Score=125.55 Aligned_cols=78 Identities=35% Similarity=0.622 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
..+.++|||+|||.++|+++|+++|+.||+|..|.|. ++||||+|.+.++|..|+..||+..|.|+.|.|.++..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 4688999999999999999999999999999999998 78999999999999999999999999999999999976
Q ss_pred CCC
Q 022301 83 GRG 85 (299)
Q Consensus 83 ~~~ 85 (299)
...
T Consensus 80 ~~~ 82 (90)
T 2dnq_A 80 KSK 82 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 553
No 66
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4e-20 Score=130.64 Aligned_cols=83 Identities=24% Similarity=0.418 Sum_probs=75.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCee-EEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCce---
Q 022301 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIA-HIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR--- 74 (299)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~-~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~--- 74 (299)
+..++++|||+|||+++++++|+++|..||+|. .|.|.. ++.++|||||+|.+.++|+.|+..|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 457899999999999999999999999999999 999954 4567899999999999999999999999999999
Q ss_pred -EEEEEccCCC
Q 022301 75 -LRVELAHGGR 84 (299)
Q Consensus 75 -i~v~~~~~~~ 84 (299)
|.|.|+....
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999987544
No 67
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.8e-20 Score=130.03 Aligned_cols=82 Identities=24% Similarity=0.485 Sum_probs=74.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC----CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEE
Q 022301 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP----PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (299)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~----~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v 77 (299)
...+.++|||+|||.++|+++|+++|..|| |..|.|..+ +.++|||||+|.+.++|.+|| .||+..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 346789999999999999999999999999 999999654 667899999999999999999 89999999999999
Q ss_pred EEccCCCC
Q 022301 78 ELAHGGRG 85 (299)
Q Consensus 78 ~~~~~~~~ 85 (299)
.++.....
T Consensus 89 ~~a~~~~~ 96 (104)
T 1wi8_A 89 DVADQAQD 96 (104)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99976543
No 68
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.82 E-value=1.3e-19 Score=129.57 Aligned_cols=83 Identities=19% Similarity=0.346 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCC---CCceEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDF---DGHRLR 76 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~---~g~~i~ 76 (299)
..+.++|||+|||.++|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|..|+..||+..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 46789999999999999999999999999999999965 367899999999999999999999999887 899999
Q ss_pred EEEccCCCC
Q 022301 77 VELAHGGRG 85 (299)
Q Consensus 77 v~~~~~~~~ 85 (299)
|.++.....
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999976543
No 69
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.82 E-value=1.7e-19 Score=128.27 Aligned_cols=79 Identities=24% Similarity=0.496 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 83 (299)
.++++|||+|||+++|+++|+++|..||+|..|.|. ++||||+|.+.++|.+|+..||+..|.|+.|.|.++...
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 567999999999999999999999999999999997 679999999999999999999999999999999999866
Q ss_pred CCCC
Q 022301 84 RGRS 87 (299)
Q Consensus 84 ~~~~ 87 (299)
....
T Consensus 84 ~~~~ 87 (103)
T 2dgu_A 84 DQKR 87 (103)
T ss_dssp CCCC
T ss_pred cccc
Confidence 5433
No 70
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.1e-20 Score=131.57 Aligned_cols=83 Identities=34% Similarity=0.572 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
..++++|||+|||.++|+++|.++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 35789999999999999999999999999999999954 467789999999999999999999999999999999999
Q ss_pred ccCCCC
Q 022301 80 AHGGRG 85 (299)
Q Consensus 80 ~~~~~~ 85 (299)
+.....
T Consensus 92 a~~~~~ 97 (103)
T 2cq0_A 92 AKPSTN 97 (103)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 976543
No 71
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.82 E-value=6.5e-20 Score=126.60 Aligned_cols=80 Identities=28% Similarity=0.556 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCC---C-CCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP---R-PPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~---~-~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
..+++|||+|||.++|+++|.++|+.||+|..|.|..+. . ++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 467899999999999999999999999999999995542 2 789999999999999999999999999999999999
Q ss_pred ccCC
Q 022301 80 AHGG 83 (299)
Q Consensus 80 ~~~~ 83 (299)
+.+.
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8653
No 72
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.7e-20 Score=131.99 Aligned_cols=80 Identities=28% Similarity=0.514 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.++++|||+|||.++|+++|.++|+.||+|..|.|..+ +.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 56789999999999999999999999999999999644 667899999999999999999999999999999999998
Q ss_pred cCC
Q 022301 81 HGG 83 (299)
Q Consensus 81 ~~~ 83 (299)
...
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 754
No 73
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.82 E-value=9.8e-20 Score=130.07 Aligned_cols=82 Identities=28% Similarity=0.383 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCCCCCC---ceEEEE
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG---HRLRVE 78 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g---~~i~v~ 78 (299)
.++++|||+|||.++|+++|.++|+.||+|..|.|.. ++.++|||||+|.+.++|..|+..|||..|.| +.|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 5689999999999999999999999999999999954 45668999999999999999999999999998 999999
Q ss_pred EccCCCC
Q 022301 79 LAHGGRG 85 (299)
Q Consensus 79 ~~~~~~~ 85 (299)
++.....
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9976543
No 74
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=130.58 Aligned_cols=83 Identities=20% Similarity=0.288 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
..++++|||+|||.++|+++|+++|..||+|..|.|.. ++.++|||||+|.+.++|..|+..||+..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 36789999999999999999999999999999999954 4566899999999999999999999999999999999998
Q ss_pred cCCCC
Q 022301 81 HGGRG 85 (299)
Q Consensus 81 ~~~~~ 85 (299)
.....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 75443
No 75
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-19 Score=128.90 Aligned_cols=78 Identities=23% Similarity=0.305 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCC-----ceEEEE
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG-----HRLRVE 78 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g-----~~i~v~ 78 (299)
...++|||+|||+++|+++|+++|..||+|..|.|..+ |||||+|.+.++|++||..||+..|.| +.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 56899999999999999999999999999999999765 899999999999999999999999999 999999
Q ss_pred EccCCCC
Q 022301 79 LAHGGRG 85 (299)
Q Consensus 79 ~~~~~~~ 85 (299)
++.....
T Consensus 89 ~a~~~~~ 95 (108)
T 1x4c_A 89 VDGPRSP 95 (108)
T ss_dssp ESSCCSC
T ss_pred eCCCCCC
Confidence 9986543
No 76
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=7.6e-20 Score=132.85 Aligned_cols=82 Identities=20% Similarity=0.473 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.+.++|||+|||.++++++|+++|..||+|..|.|.. ++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 4679999999999999999999999999999999954 4567899999999999999999999999999999999998
Q ss_pred cCCCC
Q 022301 81 HGGRG 85 (299)
Q Consensus 81 ~~~~~ 85 (299)
.....
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 76543
No 77
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=8.4e-20 Score=130.21 Aligned_cols=80 Identities=26% Similarity=0.339 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcC--CCCCCCceEEEEE
Q 022301 3 SRASRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRLRVEL 79 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~--~~~~~g~~i~v~~ 79 (299)
..++++|||+|||++ +|+++|.++|.+||+|..|.|. ..+|||||+|.+.++|..|+..|| +..|.|+.|.|.+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~---~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM---RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 468999999999998 9999999999999999999997 458999999999999999999886 4669999999999
Q ss_pred ccCCCC
Q 022301 80 AHGGRG 85 (299)
Q Consensus 80 ~~~~~~ 85 (299)
+.....
T Consensus 99 a~~~~~ 104 (112)
T 1x4f_A 99 SEKYKK 104 (112)
T ss_dssp ECSCSS
T ss_pred Cccccc
Confidence 975543
No 78
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=125.45 Aligned_cols=78 Identities=38% Similarity=0.649 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
..++++|||+|||.++|+++|+++|+.||+|..|.+. ++||||+|.+.++|..|+..|||..|.|+.|.|.++..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 4688999999999999999999999999999999997 56999999999999999999999999999999999976
Q ss_pred CCC
Q 022301 83 GRG 85 (299)
Q Consensus 83 ~~~ 85 (299)
...
T Consensus 82 ~~~ 84 (92)
T 2dgt_A 82 RLR 84 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 79
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=126.81 Aligned_cols=79 Identities=25% Similarity=0.475 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCC--CceEEEEEc
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD--GHRLRVELA 80 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~--g~~i~v~~~ 80 (299)
..++++|||+|||.++|+++|.++|+.||+|..|.+... +|||||+|.+.++|++|+..||+..|. |+.|.|.++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 357899999999999999999999999999999999743 789999999999999999999999999 999999999
Q ss_pred cCCC
Q 022301 81 HGGR 84 (299)
Q Consensus 81 ~~~~ 84 (299)
....
T Consensus 91 ~~~~ 94 (97)
T 1why_A 91 KSGP 94 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 80
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-19 Score=129.66 Aligned_cols=81 Identities=22% Similarity=0.473 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcC------CCCCCCce
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRD------GYDFDGHR 74 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~------~~~~~g~~ 74 (299)
.+.++|||+|||+++|+++|+++|..||+|..|.|..+ +.++|||||+|.+.++|..|+..|| +..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 57899999999999999999999999999999999654 6789999999999999999999999 99999999
Q ss_pred EEEEEccCCC
Q 022301 75 LRVELAHGGR 84 (299)
Q Consensus 75 i~v~~~~~~~ 84 (299)
|.|.++....
T Consensus 93 l~v~~a~~~~ 102 (111)
T 1x4h_A 93 LKVDLAVTRD 102 (111)
T ss_dssp EEEECCCCCC
T ss_pred EEEEECCCCc
Confidence 9999987654
No 81
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.1e-20 Score=129.05 Aligned_cols=80 Identities=35% Similarity=0.564 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
..++++|||+|||+++++++|+++|+.||+|..|.|..+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 367899999999999999999999999999999999654 56789999999999999999999999999999999999
Q ss_pred ccC
Q 022301 80 AHG 82 (299)
Q Consensus 80 ~~~ 82 (299)
+..
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 863
No 82
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=5.6e-20 Score=128.86 Aligned_cols=80 Identities=28% Similarity=0.496 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC--CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~--~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
..+.++|||+|||+++++++|+++|+.||+|..|.|..+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 467899999999999999999999999999999999543 566899999999999999999999999999999999998
Q ss_pred cC
Q 022301 81 HG 82 (299)
Q Consensus 81 ~~ 82 (299)
..
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 83
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.81 E-value=7.9e-20 Score=135.13 Aligned_cols=82 Identities=35% Similarity=0.590 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
..++++|||+|||+++|+++|+++|+.||+|..|.|..+ +.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 367899999999999999999999999999999999653 67899999999999999999999999999999999999
Q ss_pred ccCCC
Q 022301 80 AHGGR 84 (299)
Q Consensus 80 ~~~~~ 84 (299)
+....
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 87543
No 84
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4e-19 Score=129.23 Aligned_cols=82 Identities=24% Similarity=0.410 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
..+.++|||+|||.++|+++|+++|..||+|..|.|.. ++.++|||||+|.+.++|++|+..||+ .|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 46789999999999999999999999999999999955 367889999999999999999999998 89999999999
Q ss_pred ccCCCC
Q 022301 80 AHGGRG 85 (299)
Q Consensus 80 ~~~~~~ 85 (299)
+.....
T Consensus 93 a~~~~~ 98 (116)
T 2cqd_A 93 AYLGAK 98 (116)
T ss_dssp STTTCC
T ss_pred cccCCC
Confidence 975543
No 85
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=124.89 Aligned_cols=77 Identities=32% Similarity=0.579 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
..+.++|||+|||.++|+++|+++|+.||+|..|.|. ++||||+|.+.++|+.|+..|||..|.|+.|.|.++..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 4678999999999999999999999999999999997 56999999999999999999999999999999999976
Q ss_pred CC
Q 022301 83 GR 84 (299)
Q Consensus 83 ~~ 84 (299)
..
T Consensus 81 ~~ 82 (90)
T 2dnp_A 81 GQ 82 (90)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 86
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.81 E-value=9e-20 Score=130.50 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcC-CeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
...++|||+|||+++|+++|+++|..|| +|..+.|.. ..++|||||+|.+.++|++|+..|||..|.|+.|.|.++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4567999999999999999999999999 999999853 35789999999999999999999999999999999999864
No 87
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.9e-20 Score=128.98 Aligned_cols=78 Identities=17% Similarity=0.365 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC--CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~--~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
.+.++|||+|||+++|+++|.++|++||+|..|.|..+ +.++|||||+|.+.++|..|+. +|+..|.|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 46789999999999999999999999999999999653 6789999999999999999999 99999999999999875
Q ss_pred C
Q 022301 82 G 82 (299)
Q Consensus 82 ~ 82 (299)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 3
No 88
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=1.3e-19 Score=129.90 Aligned_cols=81 Identities=28% Similarity=0.548 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
..++++|||+|||.++|+++|.++|+.||+|..|.|.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 46789999999999999999999999999999999954 466789999999999999999999999999999999999
Q ss_pred ccCC
Q 022301 80 AHGG 83 (299)
Q Consensus 80 ~~~~ 83 (299)
+...
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 8653
No 89
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.1e-19 Score=126.01 Aligned_cols=78 Identities=35% Similarity=0.531 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 83 (299)
.++++|||+|||+++|+++|+++|..||+|..|.|.. .+|||||+|.+.++|.+|+..|||..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~---~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK---DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET---TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec---CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 5778999999999999999999999999999999973 4799999999999999999999999999999999999764
Q ss_pred C
Q 022301 84 R 84 (299)
Q Consensus 84 ~ 84 (299)
.
T Consensus 90 ~ 90 (99)
T 2cpj_A 90 A 90 (99)
T ss_dssp S
T ss_pred C
Confidence 4
No 90
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-19 Score=130.28 Aligned_cols=78 Identities=27% Similarity=0.341 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 83 (299)
...++|||+|||+++|+++|+++|.+||.|..|.|. ..+|||||+|.+.++|..|+..|||..|.|+.|.|.|+...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP---EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC---SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe---CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 456899999999999999999999999999999986 35789999999999999999999999999999999999764
Q ss_pred C
Q 022301 84 R 84 (299)
Q Consensus 84 ~ 84 (299)
.
T Consensus 85 ~ 85 (111)
T 1whx_A 85 V 85 (111)
T ss_dssp T
T ss_pred c
Confidence 4
No 91
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.80 E-value=1.3e-19 Score=129.91 Aligned_cols=78 Identities=26% Similarity=0.472 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
.++++|||+|||+++|+++|+++|..||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 5689999999999999999999999999999999954 46678999999999999999999999999999999999974
No 92
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.80 E-value=1.6e-19 Score=133.33 Aligned_cols=82 Identities=27% Similarity=0.494 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.++++|||+|||+++|+++|+++|..||.|..|.|.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 5678999999999999999999999999999999954 4677899999999999999999999999999999999999
Q ss_pred cCCCC
Q 022301 81 HGGRG 85 (299)
Q Consensus 81 ~~~~~ 85 (299)
.....
T Consensus 100 ~~~~~ 104 (126)
T 3ex7_B 100 FVRGP 104 (126)
T ss_dssp EESSS
T ss_pred cCCCC
Confidence 76543
No 93
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=127.93 Aligned_cols=82 Identities=22% Similarity=0.388 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhh-cCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCCC-CCCceEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYK-YGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYD-FDGHRLRVE 78 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~-~~g~~i~v~ 78 (299)
..++++|||+|||+++|+++|.++|.. ||.|..|.|.. ++.++|||||+|.+.++|..|+..||+.. |.|+.|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 467899999999999999999999999 99999999954 46678999999999999999999999999 999999999
Q ss_pred EccCCC
Q 022301 79 LAHGGR 84 (299)
Q Consensus 79 ~~~~~~ 84 (299)
++....
T Consensus 86 ~a~~~~ 91 (104)
T 2dhg_A 86 VAIPKA 91 (104)
T ss_dssp BCCCCC
T ss_pred EccCCC
Confidence 986554
No 94
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=127.58 Aligned_cols=79 Identities=29% Similarity=0.452 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeE--------EEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCC
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--------i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~ 71 (299)
..+.++|||+|||.++|+++|+++|+.||.|.. |.|.. ++.++|||||+|.+.++|..|+..|||..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 467899999999999999999999999999999 88854 4677899999999999999999999999999
Q ss_pred CceEEEEEcc
Q 022301 72 GHRLRVELAH 81 (299)
Q Consensus 72 g~~i~v~~~~ 81 (299)
|+.|.|.+++
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999873
No 95
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.1e-19 Score=128.29 Aligned_cols=80 Identities=24% Similarity=0.449 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
..+.++|||+|||.++|+++|+++|..||.|..|.|..+ +|||||+|.+.++|..|+..|||..|.|+.|.|.|+..
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 356889999999999999999999999999999999754 79999999999999999999999999999999999976
Q ss_pred CCC
Q 022301 83 GRG 85 (299)
Q Consensus 83 ~~~ 85 (299)
...
T Consensus 99 ~~~ 101 (109)
T 1x4g_A 99 SPD 101 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 96
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.80 E-value=1.3e-19 Score=130.57 Aligned_cols=81 Identities=26% Similarity=0.466 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.++++|||+|||.++|+++|.++|+.||+|..|.|.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 5678999999999999999999999999999999954 4677899999999999999999999999999999999998
Q ss_pred cCCC
Q 022301 81 HGGR 84 (299)
Q Consensus 81 ~~~~ 84 (299)
....
T Consensus 104 ~~~~ 107 (110)
T 1oo0_B 104 FVKG 107 (110)
T ss_dssp EESS
T ss_pred ccCC
Confidence 6543
No 97
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=2.5e-20 Score=129.19 Aligned_cols=78 Identities=17% Similarity=0.223 Sum_probs=67.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcC--CeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYG--PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G--~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
.+|||+|||.++|+++|+++|+.|| .|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 999999854 56788999999999999999999999999999999999987
Q ss_pred CCC
Q 022301 82 GGR 84 (299)
Q Consensus 82 ~~~ 84 (299)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 544
No 98
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-19 Score=129.64 Aligned_cols=81 Identities=25% Similarity=0.488 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC-CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~-~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
..+.++|||+|||.++|+++|+++|+.||+|..|.|..+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 367899999999999999999999999999999999544 4578999999999999999999999999999999999986
Q ss_pred CC
Q 022301 82 GG 83 (299)
Q Consensus 82 ~~ 83 (299)
..
T Consensus 106 ~~ 107 (109)
T 2err_A 106 AR 107 (109)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 99
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=2.4e-19 Score=127.51 Aligned_cols=82 Identities=28% Similarity=0.524 Sum_probs=74.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEE
Q 022301 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (299)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 78 (299)
...+.++|||+|||.++|+++|+++|..|| |..|.|..+ +.++|||||+|.+.++|..|+ .|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 357889999999999999999999999997 999999643 567899999999999999999 799999999999999
Q ss_pred EccCCCC
Q 022301 79 LAHGGRG 85 (299)
Q Consensus 79 ~~~~~~~ 85 (299)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9976543
No 100
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.80 E-value=1.3e-19 Score=132.27 Aligned_cols=79 Identities=22% Similarity=0.495 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
..+.++|||+|||.++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45679999999999999999999999999999999964 367899999999999999999999999999999999998
Q ss_pred cc
Q 022301 80 AH 81 (299)
Q Consensus 80 ~~ 81 (299)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 73
No 101
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.6e-19 Score=129.63 Aligned_cols=83 Identities=28% Similarity=0.489 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCee--------EEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCC
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIA--------HIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--------~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~ 71 (299)
..++++|||+|||.++|+++|+++|..||.|. .|.|.. ++.++|||||+|.+.++|..|+..|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 35789999999999999999999999999998 688854 4677899999999999999999999999999
Q ss_pred CceEEEEEccCCCC
Q 022301 72 GHRLRVELAHGGRG 85 (299)
Q Consensus 72 g~~i~v~~~~~~~~ 85 (299)
|+.|.|.++.....
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999876543
No 102
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=5.8e-20 Score=129.84 Aligned_cols=78 Identities=24% Similarity=0.420 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCC------CCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCC-c
Q 022301 4 RASRTLYVGNLPG------DIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG-H 73 (299)
Q Consensus 4 ~~~~~l~V~nLp~------~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g-~ 73 (299)
..+++|||+|||. ++++++|.++|++||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3578999999999 999999999999999999999954 36789999999999999999999999999999 9
Q ss_pred eEEEEEcc
Q 022301 74 RLRVELAH 81 (299)
Q Consensus 74 ~i~v~~~~ 81 (299)
.|.|.++.
T Consensus 84 ~l~V~~a~ 91 (100)
T 3ns6_A 84 RLFLYTMK 91 (100)
T ss_dssp BCEEEESH
T ss_pred EEEEEECc
Confidence 99999985
No 103
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.9e-19 Score=129.76 Aligned_cols=81 Identities=25% Similarity=0.437 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCe----eEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPI----AHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v----~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
.++++|||+|||.++|+++|.++|..||.| ..+.+. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 467999999999999999999999999998 555555 778899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 022301 80 AHGGRG 85 (299)
Q Consensus 80 ~~~~~~ 85 (299)
+.....
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 976553
No 104
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=9e-20 Score=131.48 Aligned_cols=81 Identities=23% Similarity=0.360 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHhhhcCCeeEEEeecCC------CCCceEEEEecChHHHHHHHHhcCCCCCCCce
Q 022301 4 RASRTLYVGNLPGDIREREVE---DLFYKYGPIAHIDLKIPP------RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~---~~F~~~G~v~~i~~~~~~------~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~ 74 (299)
...++|||+|||+++++++|. ++|.+||+|..|.|..+. .++|||||+|.+.++|++|+..|||..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 467899999999999999999 999999999999996542 45689999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 022301 75 LRVELAHGGR 84 (299)
Q Consensus 75 i~v~~~~~~~ 84 (299)
|.|.++....
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999987654
No 105
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.80 E-value=3.1e-19 Score=123.42 Aligned_cols=78 Identities=23% Similarity=0.485 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
+.++|||+|||.++|+++|.++|+.||+|..|.+.. ++.++|||||+|.+.++|..|+ .|||..|.|+.|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 468999999999999999999999999999999954 5678999999999999999999 799999999999999987
Q ss_pred CC
Q 022301 82 GG 83 (299)
Q Consensus 82 ~~ 83 (299)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 106
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.80 E-value=3.6e-19 Score=124.95 Aligned_cols=75 Identities=27% Similarity=0.550 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 3 SRASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 3 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
..++++|||+|||. ++++++|.++|+.||.|..|.|. +|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 46789999999998 99999999999999999999995 7999999999999999999999999999999999986
Q ss_pred C
Q 022301 82 G 82 (299)
Q Consensus 82 ~ 82 (299)
.
T Consensus 94 ~ 94 (97)
T 2xnq_A 94 S 94 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 107
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.7e-19 Score=127.64 Aligned_cols=80 Identities=16% Similarity=0.280 Sum_probs=71.9
Q ss_pred CCCCCCeEEE--cCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCC-----CCce
Q 022301 2 SSRASRTLYV--GNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF-----DGHR 74 (299)
Q Consensus 2 ~~~~~~~l~V--~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~-----~g~~ 74 (299)
+..++++||| +||+.++|+++|+++|++||+|..|.|.. .+|||||+|.+.++|++|+..|||..| .|.+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~---~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT---TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 4678999999 77999999999999999999999998863 378999999999999999999999977 6889
Q ss_pred EEEEEccCCC
Q 022301 75 LRVELAHGGR 84 (299)
Q Consensus 75 i~v~~~~~~~ 84 (299)
|.|.|+....
T Consensus 98 l~v~~a~~~p 107 (114)
T 2cq2_A 98 LYLNFVEKVQ 107 (114)
T ss_dssp CEEEEESCCC
T ss_pred EEEEecccCc
Confidence 9999987544
No 108
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=2.2e-19 Score=126.00 Aligned_cols=78 Identities=24% Similarity=0.500 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 3 SRASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 3 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
..++++|||+|||+ ++|+++|.++|+.||+|..|.|. +|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 36889999999998 99999999999999999999996 7899999999999999999999999999999999997
Q ss_pred CCCC
Q 022301 82 GGRG 85 (299)
Q Consensus 82 ~~~~ 85 (299)
....
T Consensus 82 ~~~~ 85 (96)
T 2kvi_A 82 SNAR 85 (96)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6543
No 109
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.8e-19 Score=126.23 Aligned_cols=83 Identities=24% Similarity=0.333 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCC-eeEEEee-c---CCCCCceEEEEecChHHHHHHHHhcC--CCCCCCceE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGP-IAHIDLK-I---PPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRL 75 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-v~~i~~~-~---~~~~~g~afV~F~~~e~A~~A~~~l~--~~~~~g~~i 75 (299)
+.++++|||+|||.++|+++|.++|..||. |..|.|. . ++.++|||||+|.+.++|..|+..|| +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 467899999999999999999999999998 9999996 3 34678999999999999999999996 589999999
Q ss_pred EEEEccCCCC
Q 022301 76 RVELAHGGRG 85 (299)
Q Consensus 76 ~v~~~~~~~~ 85 (299)
.|.++.....
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999976554
No 110
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.1e-19 Score=123.18 Aligned_cols=76 Identities=30% Similarity=0.518 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhc-CCCCCCCceEEEEEcc
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR-DGYDFDGHRLRVELAH 81 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l-~~~~~~g~~i~v~~~~ 81 (299)
..++++|||+|||.++++++|+++|++||+|..|.+.. .+|||||+|.+.++|..|+..| ||..+.|+.|.|.|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~---~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ---RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC---CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 36789999999999999999999999999999999974 4789999999999999999998 9999999999999874
No 111
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.79 E-value=6.9e-19 Score=129.53 Aligned_cols=82 Identities=24% Similarity=0.426 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
.++++|||+|||.++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 5678999999999999999999999999999999954 46788999999999999999999999999999999999997
Q ss_pred CCCC
Q 022301 82 GGRG 85 (299)
Q Consensus 82 ~~~~ 85 (299)
....
T Consensus 113 ~~~~ 116 (124)
T 2kt5_A 113 SQID 116 (124)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 6543
No 112
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.79 E-value=1.2e-19 Score=123.18 Aligned_cols=72 Identities=28% Similarity=0.505 Sum_probs=66.7
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHhhhcCCeeEEEee-cCCCCCceEEEEecChHHHHHHHHhcCCCCCCCc-eEEE
Q 022301 6 SRTLYVGNLPGDI------REREVEDLFYKYGPIAHIDLK-IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-RLRV 77 (299)
Q Consensus 6 ~~~l~V~nLp~~~------t~~~l~~~F~~~G~v~~i~~~-~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~-~i~v 77 (299)
+++|||+|||..+ |+++|.++|++||+|..|.|. .++.++|||||+|.+.++|..|+..|||..|.|+ .|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 779999999999999999995 4577899999999999999999999999999999 8876
No 113
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3e-19 Score=126.57 Aligned_cols=81 Identities=28% Similarity=0.443 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
..++++|||+|||.++|+++|+++|..||.|. +....++..+|||||+|.+.++|++|+..||+..|.|+.|.|.++..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIK-VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEE-CCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE-EEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 35789999999999999999999999999883 22234677899999999999999999999999999999999999976
Q ss_pred CC
Q 022301 83 GR 84 (299)
Q Consensus 83 ~~ 84 (299)
..
T Consensus 91 ~~ 92 (101)
T 2fc9_A 91 RG 92 (101)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 114
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.79 E-value=2.8e-19 Score=127.52 Aligned_cols=79 Identities=27% Similarity=0.463 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCC------CHHHHHHHhhhcCCeeEEEee-cCCCCCceEEEEecChHHHHHHHHhcCCCCCCCc-eE
Q 022301 4 RASRTLYVGNLPGDI------REREVEDLFYKYGPIAHIDLK-IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-RL 75 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~------t~~~l~~~F~~~G~v~~i~~~-~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~-~i 75 (299)
...++|||+|||..+ |+++|.++|++||+|..|.|. .++.++|||||+|.+.++|..|+..|||..|.|+ .|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 446899999999999 789999999999999999995 3567899999999999999999999999999999 99
Q ss_pred EEEEccC
Q 022301 76 RVELAHG 82 (299)
Q Consensus 76 ~v~~~~~ 82 (299)
.|.++..
T Consensus 93 ~V~~a~~ 99 (105)
T 2nlw_A 93 RVNLFTD 99 (105)
T ss_dssp EEECSCC
T ss_pred EEEEcch
Confidence 9999864
No 115
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.79 E-value=3.1e-19 Score=127.79 Aligned_cols=77 Identities=32% Similarity=0.580 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
..++++|||+|||.++|+++|.++|+.||+|..|.|. +|||||+|.+.++|..|+..|||..|.|+.|.|.++..
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 3678999999999999999999999999999999998 79999999999999999999999999999999999875
Q ss_pred CC
Q 022301 83 GR 84 (299)
Q Consensus 83 ~~ 84 (299)
..
T Consensus 103 ~~ 104 (108)
T 2jvo_A 103 PA 104 (108)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 116
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.79 E-value=3e-19 Score=122.94 Aligned_cols=77 Identities=23% Similarity=0.533 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
..+.++|||+|||+++|+++|.++|++||+|..|.|.. ++.++|||||+|.+.++|..|+. +++..|.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 46789999999999999999999999999999999954 36778999999999999999997 688889999999987
Q ss_pred c
Q 022301 80 A 80 (299)
Q Consensus 80 ~ 80 (299)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 117
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.79 E-value=6.8e-19 Score=132.26 Aligned_cols=82 Identities=33% Similarity=0.654 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.+.++|||+|||.++|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5678999999999999999999999999999999954 3567899999999999999999999999999999999999
Q ss_pred cCCCC
Q 022301 81 HGGRG 85 (299)
Q Consensus 81 ~~~~~ 85 (299)
.....
T Consensus 120 ~~~~~ 124 (139)
T 1u6f_A 120 ASGHQ 124 (139)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 86654
No 118
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.8e-19 Score=123.40 Aligned_cols=76 Identities=30% Similarity=0.462 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhc--CCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKY--GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
.++++|||+|||+++|+++|+++|..| |.|..|.+. +|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 999999886 7899999999999999999999999999999999997
Q ss_pred CCC
Q 022301 82 GGR 84 (299)
Q Consensus 82 ~~~ 84 (299)
...
T Consensus 88 ~~~ 90 (99)
T 2cpd_A 88 PVD 90 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 119
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4.3e-19 Score=124.76 Aligned_cols=79 Identities=28% Similarity=0.498 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 83 (299)
..+++|||+|||+++|+++|+++|..||.|. +.+.. +.++|||||+|.+.++|..|+..|||..|.|+.|.|.++...
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW-QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc-CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 4589999999999999999999999999996 55532 467899999999999999999999999999999999998754
Q ss_pred C
Q 022301 84 R 84 (299)
Q Consensus 84 ~ 84 (299)
.
T Consensus 95 ~ 95 (97)
T 2e5j_A 95 R 95 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 120
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.79 E-value=6.5e-19 Score=126.42 Aligned_cols=81 Identities=15% Similarity=0.363 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
..+.++|||+|||.++|+++|.++|+.||+|..|.|..+ +.++|||||+|.+.++|..|+..+ +..|.|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 357899999999999999999999999999999999653 678999999999999999999965 5899999999999
Q ss_pred ccCCC
Q 022301 80 AHGGR 84 (299)
Q Consensus 80 ~~~~~ 84 (299)
+....
T Consensus 101 a~~~~ 105 (109)
T 2rs2_A 101 AFPRR 105 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87544
No 121
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.5e-20 Score=125.75 Aligned_cols=78 Identities=21% Similarity=0.364 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
..++++|||+|||+++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|..|+..|||..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 46889999999999999999999999999999999954 367789999999999999999999999999999988765
Q ss_pred c
Q 022301 80 A 80 (299)
Q Consensus 80 ~ 80 (299)
+
T Consensus 82 ~ 82 (85)
T 1x4e_A 82 P 82 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 122
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.6e-19 Score=124.16 Aligned_cols=79 Identities=27% Similarity=0.433 Sum_probs=71.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhhcCC-eeEEEeecCCCCCceEEEEecChHHHHHHHHhcCC-CCCCCceEEEEE
Q 022301 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGP-IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG-YDFDGHRLRVEL 79 (299)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~-~~~~g~~i~v~~ 79 (299)
...+.++|||+|||.++|+++|+++|.+||. |..+.+. .+|||||+|.+.++|..|+..||| ..|.|+.|.|.+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 3467899999999999999999999999999 6666663 478999999999999999999999 999999999999
Q ss_pred ccCCC
Q 022301 80 AHGGR 84 (299)
Q Consensus 80 ~~~~~ 84 (299)
+....
T Consensus 80 a~~~~ 84 (93)
T 2cqh_A 80 SVSKK 84 (93)
T ss_dssp CCCCC
T ss_pred ccCcc
Confidence 97654
No 123
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=3.4e-19 Score=132.85 Aligned_cols=82 Identities=35% Similarity=0.571 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.++++|||+|||.++|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4678999999999999999999999999999999954 4678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 022301 81 HGGRG 85 (299)
Q Consensus 81 ~~~~~ 85 (299)
.....
T Consensus 125 ~~~~~ 129 (135)
T 2lea_A 125 RYGRP 129 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76554
No 124
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3e-19 Score=127.47 Aligned_cols=82 Identities=16% Similarity=0.318 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
..+.++|||+|||+++|+++|+++|..||+|..|.|.. ++.++|||||+|.+.++|.+|+.. |+..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 46789999999999999999999999999999999955 356789999999999999999997 99999999999999
Q ss_pred ccCCCC
Q 022301 80 AHGGRG 85 (299)
Q Consensus 80 ~~~~~~ 85 (299)
+.....
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 875543
No 125
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=3.2e-19 Score=126.42 Aligned_cols=76 Identities=24% Similarity=0.431 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
..+++|||+|||.++++++|.++|+.||.|..|.+. ..+|||||+|.+.++|..|+..|||..|.|+.|.|.|+..
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 357899999999999999999999999999999997 5689999999999999999999999999999999998864
No 126
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=117.55 Aligned_cols=75 Identities=27% Similarity=0.349 Sum_probs=67.3
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHHhhhc-CCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEE
Q 022301 4 RASRT-LYVGNLPGDIRERE----VEDLFYKY-GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (299)
Q Consensus 4 ~~~~~-l~V~nLp~~~t~~~----l~~~F~~~-G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v 77 (299)
.|+.| |||+|||..+++++ |.++|++| |+|.+| ++ |+|||+|.+.++|..|++.|||..|.|++|.|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 46777 99999999999998 55899999 599999 22 99999999999999999999999999999999
Q ss_pred EEccCCCC
Q 022301 78 ELAHGGRG 85 (299)
Q Consensus 78 ~~~~~~~~ 85 (299)
.+++....
T Consensus 79 ~~A~~~sd 86 (96)
T 2diu_A 79 SFTPKNRE 86 (96)
T ss_dssp ESSCCSCC
T ss_pred EecCCCcc
Confidence 99986654
No 127
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.78 E-value=3.5e-19 Score=118.98 Aligned_cols=72 Identities=21% Similarity=0.377 Sum_probs=67.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
+|||+|||+++|+++|.++|++||+|..|.+.. ++.++|||||+|.+.++|+.|+. ||+..|.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999954 46788999999999999999998 9999999999999875
No 128
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.7e-19 Score=126.79 Aligned_cols=81 Identities=33% Similarity=0.701 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.+.++|||+|||.++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 4568999999999999999999999999999999954 4567899999999999999999999999999999999998
Q ss_pred cCCC
Q 022301 81 HGGR 84 (299)
Q Consensus 81 ~~~~ 84 (299)
....
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 7543
No 129
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.78 E-value=4.1e-19 Score=135.48 Aligned_cols=77 Identities=16% Similarity=0.264 Sum_probs=71.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcC--CeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYG--PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
..++|||+|||+++|+++|.++|+.|| .|..|.|.. ++.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999954 577889999999999999999999999999999999999
Q ss_pred cc
Q 022301 80 AH 81 (299)
Q Consensus 80 ~~ 81 (299)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 130
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.78 E-value=5.1e-19 Score=131.42 Aligned_cols=81 Identities=19% Similarity=0.347 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeE--EEeec---CCCCCceEEEEecChHHHHHHHHhcCCC----CCCCc
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAH--IDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGY----DFDGH 73 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~----~~~g~ 73 (299)
+.++++|||+|||+++|+++|+++|..||.|.. |.|.. ++.++|||||+|.+. +|..|+..|||. .|.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 467899999999999999999999999999966 88844 567899999999999 999999999999 99999
Q ss_pred eEEEEEccCCC
Q 022301 74 RLRVELAHGGR 84 (299)
Q Consensus 74 ~i~v~~~~~~~ 84 (299)
.|.|.++....
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999997654
No 131
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-19 Score=126.95 Aligned_cols=79 Identities=24% Similarity=0.364 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEe---ecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~---~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
...++|||+|||+++++++|+++|..||.|..+.+ ..++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 45789999999999999999999999999976655 335677899999999999999999999999999999999998
Q ss_pred cC
Q 022301 81 HG 82 (299)
Q Consensus 81 ~~ 82 (299)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 132
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.78 E-value=7.3e-19 Score=134.72 Aligned_cols=82 Identities=34% Similarity=0.500 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.++++|||+|||.++|+++|+++|+.||+|..|.|..+ +.++|||||+|.+.++|++||..||+..|.|+.|.|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 47899999999999999999999999999999999554 567899999999999999999999999999999999999
Q ss_pred cCCCC
Q 022301 81 HGGRG 85 (299)
Q Consensus 81 ~~~~~ 85 (299)
.....
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 76443
No 133
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.78 E-value=1.3e-19 Score=126.93 Aligned_cols=78 Identities=22% Similarity=0.303 Sum_probs=69.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEee---cCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~---~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.++++|||+|||+++|+++|+++|..||.|..+.+. .++.++|||||+|.+.++|++|+..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 457899999999999999999999999999876663 34667899999999999999999999999999999999987
Q ss_pred c
Q 022301 81 H 81 (299)
Q Consensus 81 ~ 81 (299)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 134
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.78 E-value=3.9e-19 Score=125.66 Aligned_cols=78 Identities=27% Similarity=0.535 Sum_probs=69.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec----CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI----PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~----~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
.+.++|||+|||.++++++|.++|+.|| |..|.|.. ++.++|||||+|.+.++|..|+ .|||..|.|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 5689999999999999999999999999 99999954 4678999999999999999999 7999999999999999
Q ss_pred ccCC
Q 022301 80 AHGG 83 (299)
Q Consensus 80 ~~~~ 83 (299)
+...
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8653
No 135
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.5e-19 Score=127.69 Aligned_cols=77 Identities=30% Similarity=0.479 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
+.++|||+|||.++|+++|+++|..||.|..|.|..+ +.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 4579999999999999999999999999999999643 677899999999999999999 799999999999999986
Q ss_pred C
Q 022301 82 G 82 (299)
Q Consensus 82 ~ 82 (299)
.
T Consensus 103 ~ 103 (114)
T 2cq4_A 103 A 103 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 136
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.78 E-value=1e-18 Score=125.76 Aligned_cols=75 Identities=31% Similarity=0.651 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 022301 5 ASRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (299)
Q Consensus 5 ~~~~l~V~nLp~~-~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 83 (299)
++++|||+|||++ +|+++|+++|++||+|..|.|. +|||||+|.+.++|+.|+..|||..|.|+.|.|.++...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH-----KGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE-----TTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4589999999999 9999999999999999999993 899999999999999999999999999999999999754
Q ss_pred C
Q 022301 84 R 84 (299)
Q Consensus 84 ~ 84 (299)
.
T Consensus 101 ~ 101 (110)
T 1wf1_A 101 K 101 (110)
T ss_dssp C
T ss_pred C
Confidence 3
No 137
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2e-18 Score=122.90 Aligned_cols=80 Identities=18% Similarity=0.255 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeE-EEeec--CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAH-IDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.+.++|||+|||+++|+++|+++|..||.|.. |.|.. ++.++|||||+|.+.++|.+||.. |+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 56799999999999999999999999999987 77744 567889999999999999999995 999999999999988
Q ss_pred cCCC
Q 022301 81 HGGR 84 (299)
Q Consensus 81 ~~~~ 84 (299)
....
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 6433
No 138
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4e-19 Score=119.37 Aligned_cols=73 Identities=15% Similarity=0.393 Sum_probs=68.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
++|||+|||+++++++|+++|++||+|..|.+.. ++.++|||||+|.+.++|..|+..|+ ..+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5899999999999999999999999999999954 36778999999999999999999888 9999999999986
No 139
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=2.5e-19 Score=125.78 Aligned_cols=79 Identities=28% Similarity=0.440 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 83 (299)
.+.++|||+|||.++|+++|+++|..||.|..+ ..++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++...
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 567999999999999999999999999999887 566778899999999999999999999999999999999998654
Q ss_pred C
Q 022301 84 R 84 (299)
Q Consensus 84 ~ 84 (299)
.
T Consensus 92 ~ 92 (96)
T 1fjc_A 92 G 92 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 140
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=8.5e-19 Score=124.45 Aligned_cols=82 Identities=23% Similarity=0.377 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
..++++|||+|||.++|+++|+++|..|+.|.-+....++.++|||||+|.+.++|++|+..||+..|.|+.|.|.++..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 46789999999999999999999999886555444445677889999999999999999999999999999999999976
Q ss_pred CC
Q 022301 83 GR 84 (299)
Q Consensus 83 ~~ 84 (299)
..
T Consensus 92 ~~ 93 (102)
T 2fc8_A 92 KG 93 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 141
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.77 E-value=2e-19 Score=124.63 Aligned_cols=77 Identities=34% Similarity=0.618 Sum_probs=69.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 83 (299)
++|||+|||.++++++|.++|+.||+|..|.+..+ +.++|||||+|.+.+ |..|+..|||..|.|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999653 678999999999999 99999999999999999999998754
Q ss_pred C
Q 022301 84 R 84 (299)
Q Consensus 84 ~ 84 (299)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 142
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=120.79 Aligned_cols=79 Identities=18% Similarity=0.322 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
..+.++|||+|||.++|+++|+++|..| .|..|.|.. ++.++|||||+|.+.++|..|+. |||..|.|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 3578999999999999999999999999 999999965 46678999999999999999999 9999999999999998
Q ss_pred cCC
Q 022301 81 HGG 83 (299)
Q Consensus 81 ~~~ 83 (299)
...
T Consensus 85 ~~~ 87 (91)
T 2dgw_A 85 KSG 87 (91)
T ss_dssp SSC
T ss_pred CcC
Confidence 754
No 143
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.77 E-value=2e-18 Score=132.60 Aligned_cols=82 Identities=35% Similarity=0.571 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.+.++|||+|||+++|+++|.++|+.||+|..|.|.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4578999999999999999999999999999999955 5778999999999999999999999999999999999999
Q ss_pred cCCCC
Q 022301 81 HGGRG 85 (299)
Q Consensus 81 ~~~~~ 85 (299)
.....
T Consensus 148 ~~~~~ 152 (158)
T 2kn4_A 148 RYGRP 152 (158)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 76543
No 144
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2e-18 Score=122.80 Aligned_cols=81 Identities=20% Similarity=0.378 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
..+.++|||+|||.++++++|+++|..||+|..|.|..+ +.++|||||+|.+.++|..|+. ++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 467899999999999999999999999999999999553 6778999999999999999999 46789999999999
Q ss_pred ccCCCC
Q 022301 80 AHGGRG 85 (299)
Q Consensus 80 ~~~~~~ 85 (299)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 976543
No 145
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=130.89 Aligned_cols=78 Identities=35% Similarity=0.633 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
..+.++|||+|||.++|+++|+++|+.||+|..|.|..+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 357899999999999999999999999999999999543 67899999999999999999999999999999999987
Q ss_pred c
Q 022301 80 A 80 (299)
Q Consensus 80 ~ 80 (299)
+
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 146
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=7.2e-19 Score=135.94 Aligned_cols=81 Identities=26% Similarity=0.466 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.++++|||+|||+++|+++|.++|..||+|..|.|.. ++.++|||||+|.+.++|..||..|||..|.|+.|.|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 5678899999999999999999999999999999964 4667899999999999999999999999999999999998
Q ss_pred cCCC
Q 022301 81 HGGR 84 (299)
Q Consensus 81 ~~~~ 84 (299)
....
T Consensus 150 ~~~~ 153 (165)
T 1rk8_A 150 FVKG 153 (165)
T ss_dssp EECC
T ss_pred cCCC
Confidence 7544
No 147
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.77 E-value=8.2e-19 Score=127.17 Aligned_cols=75 Identities=25% Similarity=0.369 Sum_probs=66.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCce-----EEEE
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR-----LRVE 78 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~-----i~v~ 78 (299)
...++|||+|||+++|+++|+++|.+||+|..|.|..+ |||||+|.+.++|++||..|||..|.|+. |.|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 45789999999999999999999999999999999754 89999999999999999999999999988 6666
Q ss_pred EccC
Q 022301 79 LAHG 82 (299)
Q Consensus 79 ~~~~ 82 (299)
.+..
T Consensus 90 ~~~~ 93 (115)
T 3beg_B 90 VDGP 93 (115)
T ss_dssp ECC-
T ss_pred cCCC
Confidence 6543
No 148
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=125.70 Aligned_cols=79 Identities=20% Similarity=0.360 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCCCC--------CCc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDF--------DGH 73 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~~--------~g~ 73 (299)
.+.++|||+|||.++|+++|.++|..||+|..|.|.. ++.++|||||+|.+.++|..|+..|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 5789999999999999999999999999999999955 466789999999999999999999999999 578
Q ss_pred eEEEEEccC
Q 022301 74 RLRVELAHG 82 (299)
Q Consensus 74 ~i~v~~~~~ 82 (299)
+|.|.|+.+
T Consensus 103 ~l~v~~a~p 111 (114)
T 1x5o_A 103 PLLCKFSGP 111 (114)
T ss_dssp CBEEEECCC
T ss_pred ceeEEccCC
Confidence 899999864
No 149
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.8e-19 Score=127.17 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCe-eEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPI-AHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v-~~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
..+.++|||+|||+++|+++|+++|..||.| ..|.|.. ++.++|||||+|.+.++|.+||.. |+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 3578999999999999999999999999999 7888844 567899999999999999999995 99999999999999
Q ss_pred ccC
Q 022301 80 AHG 82 (299)
Q Consensus 80 ~~~ 82 (299)
+..
T Consensus 91 a~~ 93 (114)
T 2cpy_A 91 VTL 93 (114)
T ss_dssp ECH
T ss_pred CCH
Confidence 864
No 150
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.76 E-value=5.5e-19 Score=133.39 Aligned_cols=82 Identities=26% Similarity=0.474 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeE--------EEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCce
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--------i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~ 74 (299)
..++++|||+|||+++|+++|.++|+.||.|.. +.+..++.++|||||+|.+.++|..|+..|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 367899999999999999999999999999876 555667888999999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 022301 75 LRVELAHGGR 84 (299)
Q Consensus 75 i~v~~~~~~~ 84 (299)
|.|.++....
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997544
No 151
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.76 E-value=9e-19 Score=120.74 Aligned_cols=78 Identities=32% Similarity=0.421 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
+.+.++|||+|||+++++++|+++|.+| +|..+.+. .++|||||+|.+.++|..|+..|||..+.|+.|.|.++..
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 4678999999999999999999999999 99999985 6689999999999999999999999999999999999865
Q ss_pred CC
Q 022301 83 GR 84 (299)
Q Consensus 83 ~~ 84 (299)
..
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 152
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.76 E-value=5.1e-19 Score=128.25 Aligned_cols=79 Identities=56% Similarity=1.000 Sum_probs=66.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCcee-eEEEEec
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS-RAYVRVR 183 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~-~~~~~~~ 183 (299)
....++|||+|||..+++++|+++|.+||+|..+.|+.+ +||||+|.+.++|++||+.|||..|+|+.+ ..++.+.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 346789999999999999999999999999999999877 799999999999999999999999999752 2234554
Q ss_pred ccc
Q 022301 184 EYD 186 (299)
Q Consensus 184 ~~~ 186 (299)
...
T Consensus 90 ~~~ 92 (115)
T 3beg_B 90 VDG 92 (115)
T ss_dssp ECC
T ss_pred cCC
Confidence 443
No 153
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.1e-18 Score=120.12 Aligned_cols=79 Identities=16% Similarity=0.370 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEE-eecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHID-LKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~-~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
..+++|||+|||+++|+++|+++|..||+|..|. |..+. ..+.|||+|.+.++|..|+..|||..|.|+.|.|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~-~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS-ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS-SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 4578999999999999999999999999999994 65443 245599999999999999999999999999999999976
Q ss_pred C
Q 022301 83 G 83 (299)
Q Consensus 83 ~ 83 (299)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 5
No 154
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.76 E-value=2.1e-18 Score=131.33 Aligned_cols=78 Identities=45% Similarity=0.745 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 83 (299)
.+.++|||+|||+++|+++|.++|+.||.|..|.|..+ ++|||||+|.+.++|..|+..|||..|.|+.|.|.++...
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 56799999999999999999999999999999999765 5899999999999999999999999999999999998653
No 155
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.7e-18 Score=124.78 Aligned_cols=80 Identities=19% Similarity=0.377 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
+.++|||+|||.++|+++|+++|..||+|..|.|..+ +.++|||||+|.+.++|..||.. |+..|.|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 4589999999999999999999999999999999654 67889999999999999999996 9999999999999987
Q ss_pred CCCC
Q 022301 82 GGRG 85 (299)
Q Consensus 82 ~~~~ 85 (299)
....
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 6543
No 156
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.76 E-value=2.5e-18 Score=133.97 Aligned_cols=80 Identities=25% Similarity=0.446 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
.++++|||+|||+++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4678999999999999999999999999999999955 46788999999999999999999999999999999999986
Q ss_pred CC
Q 022301 82 GG 83 (299)
Q Consensus 82 ~~ 83 (299)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 53
No 157
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-18 Score=122.70 Aligned_cols=80 Identities=23% Similarity=0.342 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
..+.++|||+|||+++|+++|+++|..||.| .|.|.. ++.++|||||+|.+.++|++||. +|+..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 3567899999999999999999999999954 888843 56778999999999999999996 8999999999999988
Q ss_pred cCCC
Q 022301 81 HGGR 84 (299)
Q Consensus 81 ~~~~ 84 (299)
....
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 158
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.76 E-value=2.2e-18 Score=126.79 Aligned_cols=79 Identities=28% Similarity=0.501 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
+.++|||+|||.++|+++|.++|+.||+|..|.|.. ++.++|||||+|.+.++|..|+ .|||..|.|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 358999999999999999999999999999999953 5778999999999999999999 699999999999999987
Q ss_pred CCC
Q 022301 82 GGR 84 (299)
Q Consensus 82 ~~~ 84 (299)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 159
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.76 E-value=9.4e-19 Score=116.90 Aligned_cols=72 Identities=19% Similarity=0.493 Sum_probs=66.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~---~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
+|||+|||+++|+++|+++|+.||+|..|.+..+ +.++|||||+|.+.++|..|+. +++..|.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 6999999999999999999999999999999543 6788999999999999999999 6999999999999874
No 160
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.9e-18 Score=118.52 Aligned_cols=76 Identities=26% Similarity=0.471 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 83 (299)
.++++|||+|| ++|+++|+++|.+||+|..|.|. ..+|||||+|.+.++|.+|+..|||..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 57799999996 99999999999999999999995 56899999999999999999999999999999999998765
Q ss_pred C
Q 022301 84 R 84 (299)
Q Consensus 84 ~ 84 (299)
.
T Consensus 88 ~ 88 (97)
T 1x5p_A 88 P 88 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 161
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=3.7e-19 Score=126.08 Aligned_cols=80 Identities=20% Similarity=0.328 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEe--ecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~--~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
.+.++|||+|||.++|+++|+++|..||.|..+.+ ..++.++|||||+|.+.++|.+|+. |||..|.|+.|.|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 47889999999999999999999999999877222 2346789999999999999999999 99999999999999987
Q ss_pred CCC
Q 022301 82 GGR 84 (299)
Q Consensus 82 ~~~ 84 (299)
...
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 162
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.1e-17 Score=118.40 Aligned_cols=82 Identities=55% Similarity=0.960 Sum_probs=70.0
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCce-eeEEEE
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF-SRAYVR 181 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~-~~~~~~ 181 (299)
+.....++|||+|||..+++++|+++|.+||.|..+.++.+ +||||+|.+.++|++||+.|||..|.|+. ....|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 44556789999999999999999999999999999999887 79999999999999999999999999921 111566
Q ss_pred eccccc
Q 022301 182 VREYDH 187 (299)
Q Consensus 182 ~~~~~~ 187 (299)
|..+.+
T Consensus 87 V~~a~~ 92 (108)
T 1x4c_A 87 VKVDGP 92 (108)
T ss_dssp EEESSC
T ss_pred EEeCCC
Confidence 665544
No 163
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.75 E-value=9.6e-19 Score=127.37 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCC---eeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEE
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGP---IAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~---v~~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 78 (299)
.+.++|||+|||+++|+++|+++|..||. |..|.|.. ++.++|||||+|.+.++|.+||. ||+..|.|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 56789999999999999999999999999 88888854 36778999999999999999999 99999999999999
Q ss_pred Ecc
Q 022301 79 LAH 81 (299)
Q Consensus 79 ~~~ 81 (299)
++.
T Consensus 94 ~a~ 96 (118)
T 2db1_A 94 KSH 96 (118)
T ss_dssp EEC
T ss_pred ECC
Confidence 874
No 164
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.75 E-value=2e-18 Score=128.16 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCC---eeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEE
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGP---IAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~---v~~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 78 (299)
.+.++|||+|||+++|+++|+++|+.||. |..|.|.. ++.++|||||+|.+.++|.+||. ||+..|.|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 46789999999999999999999999999 88888854 36778999999999999999999 99999999999998
Q ss_pred Ecc
Q 022301 79 LAH 81 (299)
Q Consensus 79 ~~~ 81 (299)
++.
T Consensus 121 ~a~ 123 (136)
T 2hgl_A 121 KSH 123 (136)
T ss_dssp ECC
T ss_pred ECC
Confidence 873
No 165
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.9e-18 Score=119.09 Aligned_cols=78 Identities=22% Similarity=0.490 Sum_probs=67.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 83 (299)
...++|||+|||.++|+++|.++|..||+|..|.+... ... ||||+|.+.++|.+|+. |||..|.|+.|.|.++...
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKD-KGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSS-SCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCC-CCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 56789999999999999999999999999999833221 223 99999999999999999 9999999999999987644
Q ss_pred C
Q 022301 84 R 84 (299)
Q Consensus 84 ~ 84 (299)
.
T Consensus 83 ~ 83 (94)
T 2e5g_A 83 E 83 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 166
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.9e-18 Score=127.09 Aligned_cols=77 Identities=22% Similarity=0.308 Sum_probs=69.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEE-Ee--ecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHI-DL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i-~~--~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.+.++|||+|||+++|+++|.++|..||.|..+ .+ ..++.++|||||+|.+.++|.+||. ||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 467899999999999999999999999999763 33 3467789999999999999999999 9999999999999987
Q ss_pred c
Q 022301 81 H 81 (299)
Q Consensus 81 ~ 81 (299)
.
T Consensus 102 ~ 102 (124)
T 1wel_A 102 T 102 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 167
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.74 E-value=1.4e-17 Score=126.11 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=69.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCC--ceEEEEEccCCC
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVELAHGGR 84 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g--~~i~v~~~~~~~ 84 (299)
.+|||+||++.+|+++|.++|++||+|..|.|.. ...+|||||+|.+.++|..|+..|||..|.| +.|.|+|++...
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~-k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE-SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe-CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 4578999999999999999999999999999953 2357899999999999999999999999966 999999998654
No 168
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.74 E-value=1.9e-18 Score=123.68 Aligned_cols=78 Identities=15% Similarity=0.182 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCC---eeEEEeecC--CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGP---IAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~---v~~i~~~~~--~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v 77 (299)
....++|||+|||+++|+++|+++|..||. |..|.|..+ +.++|||||+|.+.++|.+||. ||+..|.|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 357889999999999999999999999998 899999543 6789999999999999999999 9999999999999
Q ss_pred EEcc
Q 022301 78 ELAH 81 (299)
Q Consensus 78 ~~~~ 81 (299)
.++.
T Consensus 87 ~~a~ 90 (107)
T 2lmi_A 87 YEIN 90 (107)
T ss_dssp EECC
T ss_pred EECC
Confidence 9874
No 169
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.74 E-value=3e-18 Score=139.13 Aligned_cols=77 Identities=17% Similarity=0.241 Sum_probs=70.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcC--CeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYG--PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
..++|||+|||+++|+++|+++|..|| +|..|.|.. ++.++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999954 467889999999999999999999999999999999999
Q ss_pred cc
Q 022301 80 AH 81 (299)
Q Consensus 80 ~~ 81 (299)
+.
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 170
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=6.1e-18 Score=120.71 Aligned_cols=74 Identities=22% Similarity=0.272 Sum_probs=68.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
.++|||+|||+++|+++|+++|+.| .|..|.|.. ++.++|||||+|.+.++|.+||. ||+..|.|+.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECC
Confidence 4699999999999999999999999 899999954 46789999999999999999995 99999999999998874
No 171
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.73 E-value=7e-18 Score=116.03 Aligned_cols=73 Identities=32% Similarity=0.622 Sum_probs=67.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhc----C-------CeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCC
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKY----G-------PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G-------~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~ 71 (299)
+.+.++|||+|||+++|+++|+++|.+| | +|..+.+.. .+|||||+|.+.++|.+|+ .|||..|.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~---~kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---DKNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS---SSSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC---CCcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 4678999999999999999999999999 8 999999974 3799999999999999999 89999999
Q ss_pred CceEEEEE
Q 022301 72 GHRLRVEL 79 (299)
Q Consensus 72 g~~i~v~~ 79 (299)
|+.|.|..
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999864
No 172
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=1.8e-17 Score=120.48 Aligned_cols=77 Identities=25% Similarity=0.251 Sum_probs=68.1
Q ss_pred CCCe--EEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCce-EEEEecChHHHHHHHHhcCCCCCCC--ceEEEEE
Q 022301 5 ASRT--LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGY-AFVEFEEARDAEDAIRGRDGYDFDG--HRLRVEL 79 (299)
Q Consensus 5 ~~~~--l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~-afV~F~~~e~A~~A~~~l~~~~~~g--~~i~v~~ 79 (299)
++++ |||+||++.+|+++|.++|++||+|..|.|... .|| |||+|.+.++|..|+..|||..|.| +.|.|.+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 4555 468999999999999999999999999999542 386 9999999999999999999999987 5899999
Q ss_pred ccCCC
Q 022301 80 AHGGR 84 (299)
Q Consensus 80 ~~~~~ 84 (299)
++...
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 97654
No 173
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=1.9e-17 Score=127.89 Aligned_cols=127 Identities=13% Similarity=0.119 Sum_probs=66.9
Q ss_pred EEecChHHHHHHHHhcCCCCCC--CceEEEEEccCCCCCCCCCCCC-CCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHH
Q 022301 50 VEFEEARDAEDAIRGRDGYDFD--GHRLRVELAHGGRGRSSSDRHS-SHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLK 126 (299)
Q Consensus 50 V~F~~~e~A~~A~~~l~~~~~~--g~~i~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 126 (299)
.+|.+.++|..|+..|++.... |+.+.+.+.............. ........+......++|||+|||..+++++|.
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7899999999999999987665 6666655532211110000000 000011222344567899999999999999999
Q ss_pred HHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 127 DHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 127 ~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
++|.+||.|..|.|+.+..+ |||||+|.+.++|+.||..|||..|.|+.+
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 99999999999999988644 599999999999999999999999999844
No 174
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.73 E-value=1.1e-17 Score=122.08 Aligned_cols=75 Identities=19% Similarity=0.284 Sum_probs=67.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCce-EEEEecChHHHHHHHHhcCCCCCCC--ceEEEEEccCCC
Q 022301 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGY-AFVEFEEARDAEDAIRGRDGYDFDG--HRLRVELAHGGR 84 (299)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~-afV~F~~~e~A~~A~~~l~~~~~~g--~~i~v~~~~~~~ 84 (299)
.|||+||++.+|+++|.++|++||+|..|.|... .+|+ |||+|.+.++|..|+..|||..|.| +.|.|+|++...
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~--~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE--TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC--CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 4569999999999999999999999999988642 3677 9999999999999999999999988 899999997654
No 175
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.73 E-value=2.8e-18 Score=127.76 Aligned_cols=79 Identities=19% Similarity=0.281 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
.+.++|||+|||+++|+++|+++|++|| |+.|.|.. ++.++|||||+|.+.++|++|| .||+..|.|+.|.|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 4678999999999999999999999999 77998854 4678999999999999999999 599999999999999886
Q ss_pred CCC
Q 022301 82 GGR 84 (299)
Q Consensus 82 ~~~ 84 (299)
...
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 176
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-18 Score=125.90 Aligned_cols=78 Identities=23% Similarity=0.241 Sum_probs=69.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCe----eEEEee--cCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPI----AHIDLK--IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v----~~i~~~--~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~ 76 (299)
..+.++|||+|||+++|+++|+++|+.||+| ..|.|. .++.++|||||+|.+.++|++||. +|+..|.|+.|.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~-~~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALR-KHKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHT-TTTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeeCCeEEE
Confidence 4577999999999999999999999999975 577774 357788999999999999999999 599999999999
Q ss_pred EEEcc
Q 022301 77 VELAH 81 (299)
Q Consensus 77 v~~~~ 81 (299)
|..+.
T Consensus 99 V~~a~ 103 (123)
T 2dha_A 99 LFRST 103 (123)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 98763
No 177
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.73 E-value=1.6e-17 Score=114.46 Aligned_cols=75 Identities=23% Similarity=0.460 Sum_probs=62.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCC--CCCceEEEEEc
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD--FDGHRLRVELA 80 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~--~~g~~i~v~~~ 80 (299)
..+.++|||+|||+++|+++|+++|++||+|.+|.|..+ ++|||||+|.+.++|.+ |++.. +.|+.|.|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 367899999999999999999999999999999999764 78999999999999883 55554 45899999998
Q ss_pred cCC
Q 022301 81 HGG 83 (299)
Q Consensus 81 ~~~ 83 (299)
.+.
T Consensus 82 ~~k 84 (89)
T 3d2w_A 82 EPK 84 (89)
T ss_dssp C--
T ss_pred CCC
Confidence 643
No 178
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9.2e-18 Score=115.67 Aligned_cols=78 Identities=24% Similarity=0.439 Sum_probs=66.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
+.++++|||+|||.++|+++|+++|+.||+|..|.|..+ ++|||||+|.+.++|++|+.. +..+.|..|.|.++..
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 467899999999999999999999999999999999754 689999999999999754331 3445899999998875
Q ss_pred CC
Q 022301 83 GR 84 (299)
Q Consensus 83 ~~ 84 (299)
..
T Consensus 78 ~~ 79 (88)
T 1wf0_A 78 KH 79 (88)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 179
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.72 E-value=1.2e-17 Score=122.03 Aligned_cols=76 Identities=21% Similarity=0.258 Sum_probs=68.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCee--EEEeec--CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIA--HIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
.+.++|||+|||+++|+++|+++|+.| .|. .|.|.. ++.++|||||+|.++++|.+||. +++..|.|+.|.|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 457899999999999999999999999 576 888854 36789999999999999999999 688999999999988
Q ss_pred cc
Q 022301 80 AH 81 (299)
Q Consensus 80 ~~ 81 (299)
+.
T Consensus 118 a~ 119 (126)
T 2hgm_A 118 SS 119 (126)
T ss_dssp EC
T ss_pred CC
Confidence 74
No 180
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=3.9e-19 Score=129.26 Aligned_cols=82 Identities=28% Similarity=0.430 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeE--------EEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCC
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--------i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~ 71 (299)
..++++|||+|||.++++++|+++|+.||.|.. |.|.. ++.++|||||+|.+.++|..|+..|||..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 467899999999999999999999999999998 77754 3678899999999999999999999999999
Q ss_pred CceEEEEEccCCC
Q 022301 72 GHRLRVELAHGGR 84 (299)
Q Consensus 72 g~~i~v~~~~~~~ 84 (299)
|+.|.|.++....
T Consensus 84 g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 GNPIKVSFATRRA 96 (116)
Confidence 9999999987554
No 181
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.72 E-value=5.4e-17 Score=114.10 Aligned_cols=70 Identities=21% Similarity=0.368 Sum_probs=64.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
.+++|||+|||..+++++|.++|.+||.|..+.++.++.+ |||||+|.+.++|+.|++.|||..|+|+.+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l 91 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 91 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 4579999999999999999999999999999999988654 499999999999999999999999999843
No 182
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.72 E-value=2.8e-17 Score=119.94 Aligned_cols=76 Identities=26% Similarity=0.471 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 83 (299)
.++++|||+|| ++|+++|.++|+.||+|..|.|. .++|||||+|.+.++|..|+..|||..|.|+.|.|.++...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 57899999996 69999999999999999999996 56899999999999999999999999999999999998754
Q ss_pred C
Q 022301 84 R 84 (299)
Q Consensus 84 ~ 84 (299)
.
T Consensus 112 ~ 112 (121)
T 2bz2_A 112 P 112 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 183
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.72 E-value=2.7e-17 Score=116.61 Aligned_cols=81 Identities=20% Similarity=0.254 Sum_probs=71.6
Q ss_pred CCCCCCeEEEcCCCC-----CCCHHHHHHHhhhcCCeeEEEeecC----CCCCceEEEEecChHHHHHHHHhcCCCCCCC
Q 022301 2 SSRASRTLYVGNLPG-----DIREREVEDLFYKYGPIAHIDLKIP----PRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (299)
Q Consensus 2 ~~~~~~~l~V~nLp~-----~~t~~~l~~~F~~~G~v~~i~~~~~----~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g 72 (299)
...++++|+|.||.. +-++++|+++|++||+|..|.|..+ +.++|||||+|.+.++|.+|+..|||..|.|
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 457899999999963 2478999999999999999999653 4678999999999999999999999999999
Q ss_pred ceEEEEEccC
Q 022301 73 HRLRVELAHG 82 (299)
Q Consensus 73 ~~i~v~~~~~ 82 (299)
+.|.|.++..
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999999853
No 184
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.1e-17 Score=118.66 Aligned_cols=74 Identities=34% Similarity=0.547 Sum_probs=62.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC------CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP------PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~------~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~ 76 (299)
..++++|||+|||+++|+++|+++|++||+|. +.+..+ +.++|||||+|.+.++|++|+..|++ +.|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEE
Confidence 36789999999999999999999999999999 766433 57799999999999999999998843 5566555
Q ss_pred EEE
Q 022301 77 VEL 79 (299)
Q Consensus 77 v~~ 79 (299)
+..
T Consensus 82 ~~~ 84 (114)
T 2dnl_A 82 CVS 84 (114)
T ss_dssp EEC
T ss_pred ecc
Confidence 544
No 185
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.70 E-value=1e-17 Score=118.76 Aligned_cols=78 Identities=23% Similarity=0.498 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
.++++|||+|||.++++++|.++|+.||.|..|.|.. ++.++|||||+|.+.++|..|+. ++..|.|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 4578999999999999999999999999999999955 46678999999999999999999 8999999999999886
Q ss_pred CC
Q 022301 82 GG 83 (299)
Q Consensus 82 ~~ 83 (299)
..
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 43
No 186
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.69 E-value=7e-17 Score=115.43 Aligned_cols=77 Identities=31% Similarity=0.572 Sum_probs=68.6
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCceeeEEEEecc
Q 022301 106 RSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~~~ 184 (299)
...++|||+|||..+++++|+++|.+|| .|..+.+......|||||+|.+.++|++|++.|||..|+|+ .|.|..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr----~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGS----VITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTE----EEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCe----EEEEEE
Confidence 3568999999999999999999999999 89999987666778999999999999999999999999999 555554
Q ss_pred cc
Q 022301 185 YD 186 (299)
Q Consensus 185 ~~ 186 (299)
..
T Consensus 102 a~ 103 (111)
T 2jvr_A 102 DD 103 (111)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 187
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.69 E-value=3.4e-17 Score=121.95 Aligned_cols=111 Identities=13% Similarity=0.043 Sum_probs=67.2
Q ss_pred ceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHH
Q 022301 46 GYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDL 125 (299)
Q Consensus 46 g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l 125 (299)
-++|++|.+...|..|+..|+|....|... +.+ ...++......+|||+|||..+++++|
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~-------------------~~~~~~~~~~~~l~V~nLp~~~te~~L 64 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSY-------------------GRPPPDVEGMTSLKVDNLTYRTSPDTL 64 (135)
T ss_dssp -------------------------------CCS-------------------CCSCSSGGGCCCEEEECCCSSCHHHHH
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCc-------------------CCCCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 477888888888888998888866554421 100 111233445689999999999999999
Q ss_pred HHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 126 KDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 126 ~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
.++|.+||.|..+.++.+.. .|||||+|.+.++|+.|+..|||..|.|+.+
T Consensus 65 ~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 119 (135)
T 2lea_A 65 RRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 119 (135)
T ss_dssp HHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCC
T ss_pred HHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 99999999999999987753 4599999999999999999999999999944
No 188
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.69 E-value=1.1e-16 Score=129.31 Aligned_cols=81 Identities=28% Similarity=0.548 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.+.++|||+|||.++|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 4668999999999999999999999999999999954 4567899999999999999999999999999999999999
Q ss_pred cCCC
Q 022301 81 HGGR 84 (299)
Q Consensus 81 ~~~~ 84 (299)
....
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 7654
No 189
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.68 E-value=8.8e-17 Score=124.17 Aligned_cols=79 Identities=25% Similarity=0.479 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
..++++|||+|||.++|+++|.++|+.||.|..+.+.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.|
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 35678999999999999999999999999999999954 467789999999999999999999999999999999999
Q ss_pred cc
Q 022301 80 AH 81 (299)
Q Consensus 80 ~~ 81 (299)
+.
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 85
No 190
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.68 E-value=4.9e-17 Score=131.35 Aligned_cols=78 Identities=27% Similarity=0.419 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCC---------CHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCC----
Q 022301 4 RASRTLYVGNLPGDI---------REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF---- 70 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~---------t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~---- 70 (299)
..+++|||+||+..+ ++++|.++|++||+|..|.|.. .+|||||+|.+.++|+.|+..|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~---~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE---SKNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC---CCCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 578999999999998 7999999999999999999973 489999999999999999999999999
Q ss_pred --------CCceEEEEEccCCC
Q 022301 71 --------DGHRLRVELAHGGR 84 (299)
Q Consensus 71 --------~g~~i~v~~~~~~~ 84 (299)
.|+.|.|.|+....
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp STTGGGGGGSCCCEEEECC---
T ss_pred cccccccCCCCEEEEEEccCCC
Confidence 89999999997544
No 191
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.68 E-value=6.6e-17 Score=130.31 Aligned_cols=78 Identities=24% Similarity=0.405 Sum_probs=71.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC-CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~-~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
+.++|||+|||+++|+++|+++|+.||.|..|.|..+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++..
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 4678999999999999999999999999999999543 45689999999999999999999999999999999999864
No 192
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-15 Score=109.25 Aligned_cols=82 Identities=16% Similarity=0.226 Sum_probs=70.9
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC-CCEEEEEecChhhHHHHHHhcCCCeecCceeeEEEE
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~-~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~ 181 (299)
.......+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|++.|||..|+|+ .+.
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l~ 92 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY----RLR 92 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTE----ECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCe----EEE
Confidence 4455678999999999999999999999999999999977654 57999999999999999999999999998 555
Q ss_pred ecccccC
Q 022301 182 VREYDHR 188 (299)
Q Consensus 182 ~~~~~~~ 188 (299)
|......
T Consensus 93 V~~a~~~ 99 (109)
T 1x4a_A 93 VEFPRSG 99 (109)
T ss_dssp EECCCCC
T ss_pred EEEcccC
Confidence 5555443
No 193
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.67 E-value=7e-16 Score=111.77 Aligned_cols=71 Identities=17% Similarity=0.253 Sum_probs=65.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCC---CCCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
....+|||+|||..+++++|.++|.+||.|..+.+..+. ..|||||+|.+.++|+.|++.|||..|+|+.+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 78 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAI 78 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 345799999999999999999999999999999999876 23699999999999999999999999999954
No 194
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.2e-16 Score=112.94 Aligned_cols=81 Identities=23% Similarity=0.379 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCCCC-----------HHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCC
Q 022301 3 SRASRTLYVGNLPGDIR-----------EREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~t-----------~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~ 71 (299)
..++++|+|.||..... +++|+++|++||+|..|.| .+..++|||||+|.+.++|..|+..|||..|.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 36789999999944432 5899999999999999977 45568999999999999999999999999999
Q ss_pred CceEEEEEccCCC
Q 022301 72 GHRLRVELAHGGR 84 (299)
Q Consensus 72 g~~i~v~~~~~~~ 84 (299)
|+.|.|.++.+..
T Consensus 91 gr~l~v~~a~~~~ 103 (112)
T 2dit_A 91 GRQITAQAWDGTT 103 (112)
T ss_dssp TEECEEEECCSCC
T ss_pred CcEEEEEEeCCCC
Confidence 9999999986543
No 195
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-15 Score=107.18 Aligned_cols=82 Identities=10% Similarity=0.091 Sum_probs=71.0
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC--CEEEEEecChhhHHHHHHhcCCCeecCceeeEEE
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG--TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~--~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~ 180 (299)
.......+|||+|||..+++++|.++|.+||.|..|.++.+... +||||+|.+.++|+.|+..|||..|.|+ .+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l 85 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGK----EV 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTE----EE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCC----eE
Confidence 34456789999999999999999999999999999999987543 6999999999999999999999999998 55
Q ss_pred EecccccC
Q 022301 181 RVREYDHR 188 (299)
Q Consensus 181 ~~~~~~~~ 188 (299)
.|......
T Consensus 86 ~V~~a~~~ 93 (103)
T 2cqi_A 86 KVNWATTP 93 (103)
T ss_dssp EEEECCCT
T ss_pred EEEECCCC
Confidence 55554443
No 196
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.67 E-value=5.8e-16 Score=110.90 Aligned_cols=72 Identities=18% Similarity=0.119 Sum_probs=66.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCceee
Q 022301 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (299)
.+..+|||+|||..+++++|.++|.+||.|..+.|+.++.+ |||||+|.+.++|++|++.|||..|+|+.+.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~ 79 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIH 79 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34579999999999999999999999999999999998764 5999999999999999999999999999553
No 197
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.67 E-value=5.7e-16 Score=103.82 Aligned_cols=73 Identities=12% Similarity=0.172 Sum_probs=65.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCceeeEEEEeccc
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~~~~ 185 (299)
...-|+|+||++.+++++|.++|.+||+|..+++.. ..|||||+|.+.++|.+|++.|||..+.|+ .|.|..+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr----~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANT----TIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTE----EEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCc----EEEEEEC
Confidence 346899999999999999999999999999999876 568999999999999999999999999999 5555443
No 198
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2e-15 Score=107.14 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=70.9
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC--CCEEEEEecChhhHHHHHHhcCCCeecCceeeEEE
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~--~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~ 180 (299)
.......+|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|+.|+..|||..|+|+ .+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l 85 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGR----KI 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTE----EC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE----EE
Confidence 4455678999999999999999999999999999999998754 46999999999999999999999999998 44
Q ss_pred EecccccC
Q 022301 181 RVREYDHR 188 (299)
Q Consensus 181 ~~~~~~~~ 188 (299)
.+......
T Consensus 86 ~v~~a~~~ 93 (103)
T 2cq3_A 86 EVNNATAR 93 (103)
T ss_dssp EEEECCSS
T ss_pred EEEEcccC
Confidence 44444433
No 199
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6e-16 Score=108.69 Aligned_cols=77 Identities=8% Similarity=0.105 Sum_probs=66.7
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcC--CCeecCceeeEEEEe
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD--DSEFRNAFSRAYVRV 182 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~--g~~~~g~~~~~~~~~ 182 (299)
..+..+|||+|||+.+++++|+++|.+||.|..+.++.+ .|||||+|.+.++|..|++.|+ +..|.|+ .+.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr----~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ----PIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEETTE----ECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceECCE----EEEE
Confidence 345689999999999999999999999999999999876 5799999999999999999886 4789998 5555
Q ss_pred ccccc
Q 022301 183 REYDH 187 (299)
Q Consensus 183 ~~~~~ 187 (299)
.....
T Consensus 87 ~~A~~ 91 (105)
T 1sjq_A 87 QFSNH 91 (105)
T ss_dssp CCCSS
T ss_pred EEcCC
Confidence 55443
No 200
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.66 E-value=3.4e-16 Score=115.39 Aligned_cols=73 Identities=18% Similarity=0.312 Sum_probs=66.3
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
......+|||+|||..+++++|.++|.+||.|..|.++.+.. .+||||+|.+.++|+.|++.|||..|+|+.+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 445678999999999999999999999999999999987753 4599999999999999999999999999955
No 201
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.66 E-value=1.3e-16 Score=124.48 Aligned_cols=77 Identities=29% Similarity=0.461 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccC
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 82 (299)
.+.++|||+|||.++|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.+
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 356899999999999999999999999999888 66778899999999999999999999999999999999999864
No 202
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.2e-16 Score=114.40 Aligned_cols=75 Identities=23% Similarity=0.355 Sum_probs=66.3
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecC----hHH----HHHHHH--hcCCCC
Q 022301 7 RTLYVGNL----PGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEE----ARD----AEDAIR--GRDGYD 69 (299)
Q Consensus 7 ~~l~V~nL----p~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~----~e~----A~~A~~--~l~~~~ 69 (299)
+.|||+|| |+.+++++|+++|+.||+|.+|.+.. ++.++|||||+|.+ +++ |..|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 99999999999999999999999955 46779999999996 333 788888 789999
Q ss_pred CCCceEEEEEcc
Q 022301 70 FDGHRLRVELAH 81 (299)
Q Consensus 70 ~~g~~i~v~~~~ 81 (299)
|.|+.|.|.+-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999864
No 203
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.66 E-value=1.5e-16 Score=123.65 Aligned_cols=77 Identities=27% Similarity=0.586 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.+.++|||+|||.++|+++|.++|++||+|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 3468999999999999999999999999999999954 4567899999999999999999999999999999999987
No 204
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.66 E-value=2e-16 Score=122.42 Aligned_cols=77 Identities=22% Similarity=0.534 Sum_probs=71.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
++++|||+|||.++|+++|.++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+. |+|..|.|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 467999999999999999999999999999999954 46788999999999999999999 99999999999999986
Q ss_pred C
Q 022301 82 G 82 (299)
Q Consensus 82 ~ 82 (299)
+
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 205
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.66 E-value=2.7e-16 Score=125.12 Aligned_cols=81 Identities=27% Similarity=0.573 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.+.++|||+|||.++++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 5679999999999999999999999999999999954 4567899999999999999999999999999999999999
Q ss_pred cCCC
Q 022301 81 HGGR 84 (299)
Q Consensus 81 ~~~~ 84 (299)
.+..
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 206
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.65 E-value=5.9e-16 Score=112.05 Aligned_cols=75 Identities=20% Similarity=0.324 Sum_probs=66.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC--CEEEEEecChhhHHHHHHhcCCCeecCceeeEEEEeccc
Q 022301 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG--TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (299)
Q Consensus 108 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~--~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~~~~ 185 (299)
..+|||+|||..+++++|.++|.+||.|..|.|+.+..+ |||||+|.+.++|+.|++.|+|..|+|+ .+.|...
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~----~i~V~~a 80 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR----KVFVGRF 80 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTE----ECEEEES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCE----EEEEEEC
Confidence 468999999999999999999999999999999988653 5999999999999999999999999998 4444444
Q ss_pred c
Q 022301 186 D 186 (299)
Q Consensus 186 ~ 186 (299)
.
T Consensus 81 ~ 81 (115)
T 4f25_A 81 K 81 (115)
T ss_dssp S
T ss_pred C
Confidence 3
No 207
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=8.8e-16 Score=108.95 Aligned_cols=74 Identities=14% Similarity=0.216 Sum_probs=66.5
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeC--CCCCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD--GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~--~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
.......+|||+|||..+++++|.++|.+||.|..+.+..+ ...+||||+|.+.++|+.|++.|||..|.|+.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 85 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 34456789999999999999999999999999999999987 223599999999999999999999999999944
No 208
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.65 E-value=3.8e-16 Score=120.89 Aligned_cols=77 Identities=34% Similarity=0.578 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCC--ceEEEE
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVE 78 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g--~~i~v~ 78 (299)
.+.++|||+|||.++++++|.++|+.||.|..+.+.. ++.++|||||+|.+.++|..|+..|||..|.| ++|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 5678999999999999999999999999999999954 45667999999999999999999999999988 999998
Q ss_pred Ec
Q 022301 79 LA 80 (299)
Q Consensus 79 ~~ 80 (299)
||
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 209
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.8e-15 Score=104.50 Aligned_cols=76 Identities=16% Similarity=0.318 Sum_probs=67.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCceeeEEEEecc
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~~~ 184 (299)
..+..+|||+|||..+++++|+++|.+||.|..+.+. .+||||+|.+.++|+.|++.|||..|+|+ .+.+..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGV----NINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSC----BCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCc----EEEEEE
Confidence 4466899999999999999999999999999999998 46999999999999999999999999999 455555
Q ss_pred cccC
Q 022301 185 YDHR 188 (299)
Q Consensus 185 ~~~~ 188 (299)
....
T Consensus 77 a~~~ 80 (90)
T 2dnq_A 77 SKNK 80 (90)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 4444
No 210
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-15 Score=108.50 Aligned_cols=74 Identities=16% Similarity=0.131 Sum_probs=67.0
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
+......+|||+|||..+++++|.++|.+||.|..+.++.+.. .+||||+|.+.++|+.|++.|||..|+|+.+
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 3445678999999999999999999999999999999988754 3699999999999999999999999999944
No 211
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.65 E-value=3.4e-16 Score=121.99 Aligned_cols=76 Identities=22% Similarity=0.359 Sum_probs=69.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCCCCC---CceEEEEE
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD---GHRLRVEL 79 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~---g~~i~v~~ 79 (299)
+.++|||+|||.++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|..|+..|||..+. |++|.|.|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 678999999999999999999999999999999954 4567899999999999999999999998776 48999998
Q ss_pred c
Q 022301 80 A 80 (299)
Q Consensus 80 ~ 80 (299)
+
T Consensus 174 a 174 (175)
T 3nmr_A 174 A 174 (175)
T ss_dssp C
T ss_pred c
Confidence 7
No 212
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.5e-15 Score=105.79 Aligned_cols=79 Identities=16% Similarity=0.166 Sum_probs=69.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCC----CCCEEEEEecChhhHHHHHHhcCCCeecCceeeEEEE
Q 022301 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~ 181 (299)
....+|||+|||..+++++|.++|.+||.|..+.++.+. ..+||||+|.+.++|+.|++.|||..|.|+ .+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~ 81 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR----MLH 81 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSC----EEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCc----EEE
Confidence 456899999999999999999999999999999998876 336999999999999999999999999999 555
Q ss_pred ecccccC
Q 022301 182 VREYDHR 188 (299)
Q Consensus 182 ~~~~~~~ 188 (299)
|......
T Consensus 82 V~~a~~~ 88 (99)
T 1whw_A 82 VLPSTIK 88 (99)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 5555444
No 213
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.7e-15 Score=105.99 Aligned_cols=80 Identities=16% Similarity=0.164 Sum_probs=69.9
Q ss_pred CCCccEEEEeCCCCCCCHHHHH----HHHHhcCCeeEEEEEeCCC-CCEEEEEecChhhHHHHHHhcCCCeecCceeeEE
Q 022301 105 RRSEYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~----~~f~~~G~v~~~~~~~~~~-~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (299)
....++|||+|||..+++++|+ ++|.+||.|..+.++.+.. .+||||+|.+.++|+.|++.|||..|+|+ .
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr----~ 81 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSK----K 81 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTE----E
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCe----E
Confidence 3456899999999999999999 9999999999999987754 47999999999999999999999999999 5
Q ss_pred EEecccccC
Q 022301 180 VRVREYDHR 188 (299)
Q Consensus 180 ~~~~~~~~~ 188 (299)
+.|....+.
T Consensus 82 l~V~~a~~~ 90 (96)
T 2dgx_A 82 ILVSLATGA 90 (96)
T ss_dssp EEEEECCCS
T ss_pred EEEEEcCCC
Confidence 555555443
No 214
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.9e-15 Score=107.17 Aligned_cols=81 Identities=15% Similarity=0.202 Sum_probs=70.6
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCceeeEE
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (299)
......+|||+|||..+++++|.++|.+||.|..|.++.++.. +||||+|.+.++|+.|+..|||..|.|+ .
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~ 86 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL----I 86 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE----E
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCc----E
Confidence 4456789999999999999999999999999999999988643 4999999999999999999999999998 5
Q ss_pred EEecccccC
Q 022301 180 VRVREYDHR 188 (299)
Q Consensus 180 ~~~~~~~~~ 188 (299)
+.|......
T Consensus 87 l~v~~a~~~ 95 (103)
T 2cq0_A 87 LNVEWAKPS 95 (103)
T ss_dssp CEEEESSCC
T ss_pred EEEEECCCC
Confidence 555544443
No 215
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.6e-15 Score=105.90 Aligned_cols=78 Identities=15% Similarity=0.237 Sum_probs=68.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCceeeEEEEe
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~ 182 (299)
+..+|||+|||..+++++|+++|.+||.|..+.++.++. .+||||+|.+.++|+.|++.|||..|.|+ .+.+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~V 79 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGR----PMRV 79 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSS----CCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCc----EEEE
Confidence 458999999999999999999999999999999998754 46999999999999999999999999999 4444
Q ss_pred cccccC
Q 022301 183 REYDHR 188 (299)
Q Consensus 183 ~~~~~~ 188 (299)
.....+
T Consensus 80 ~~a~~~ 85 (95)
T 2dnz_A 80 GHVTER 85 (95)
T ss_dssp EESSCC
T ss_pred EEcccc
Confidence 444443
No 216
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.65 E-value=9.4e-16 Score=105.50 Aligned_cols=71 Identities=14% Similarity=0.216 Sum_probs=65.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCC-----CCCEEEEEecChhhHHHHHHhcCCCeecCceee
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~-----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (299)
...+|||+|||..+++++|.++|.+||.|..+.+..+. ..|||||+|.+.++|+.|+..|||..++|+.+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 78 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEIT 78 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEE
Confidence 34799999999999999999999999999999998876 457999999999999999999999999999543
No 217
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.65 E-value=4.6e-15 Score=107.41 Aligned_cols=81 Identities=21% Similarity=0.256 Sum_probs=70.6
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCceeeEE
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (299)
......+|||+|||..+++++|+++|..||.|..+.++.+... +||||+|.+.++|+.|++.|||..|+|+ .
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~ 96 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK----R 96 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE----E
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCE----E
Confidence 3445689999999999999999999999999999999988744 4999999999999999999999999998 5
Q ss_pred EEecccccC
Q 022301 180 VRVREYDHR 188 (299)
Q Consensus 180 ~~~~~~~~~ 188 (299)
+.|......
T Consensus 97 l~V~~a~~~ 105 (115)
T 2cpz_A 97 LKVQLKRSK 105 (115)
T ss_dssp CEEECCCCS
T ss_pred EEEEEcCCC
Confidence 555555444
No 218
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2.9e-15 Score=103.96 Aligned_cols=77 Identities=22% Similarity=0.368 Sum_probs=68.2
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCceeeEEEEec
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~~ 183 (299)
......+|||+|||..+++++|+++|.+||.|..+.+..+ ||||+|.+.++|+.|+..|||..|.|+ .+.+.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQGK----RMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS----EEEEEESCHHHHHHHHHHHTTEEETTE----EEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC----EEEEEECCHHHHHHHHHHhCCCeeCCc----EEEEE
Confidence 4456789999999999999999999999999999999855 999999999999999999999999998 55555
Q ss_pred ccccC
Q 022301 184 EYDHR 188 (299)
Q Consensus 184 ~~~~~ 188 (299)
.....
T Consensus 78 ~a~~~ 82 (92)
T 2dgt_A 78 LSTSR 82 (92)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 55444
No 219
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.64 E-value=8.8e-15 Score=105.92 Aligned_cols=82 Identities=18% Similarity=0.270 Sum_probs=70.9
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCceeeE
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (299)
.......+|||+|||..+++++|+++|..||.|..|.++.+... +||||+|.+.++|+.|++.|+|..|+|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---- 85 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR---- 85 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTE----
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCE----
Confidence 34556789999999999999999999999999999999988643 5999999999999999999999999998
Q ss_pred EEEecccccC
Q 022301 179 YVRVREYDHR 188 (299)
Q Consensus 179 ~~~~~~~~~~ 188 (299)
.|.|......
T Consensus 86 ~l~V~~a~~~ 95 (115)
T 2dgo_A 86 QIRTNWATRK 95 (115)
T ss_dssp ECEEEESSCC
T ss_pred EEEEEEccCC
Confidence 4455444433
No 220
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.8e-15 Score=106.07 Aligned_cols=73 Identities=21% Similarity=0.254 Sum_probs=65.8
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
.......+|||+|||..+++++|+++|.+||.|. +.++.+...+||||+|.+.++|+.|++.|||..|+|+.+
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTL 86 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 3445568999999999999999999999999997 677777778899999999999999999999999999944
No 221
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2e-15 Score=106.11 Aligned_cols=78 Identities=17% Similarity=0.265 Sum_probs=68.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC-------CCEEEEEecChhhHHHHHHhcCCCeecCceeeEE
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-------GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~-------~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (299)
+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|+..|||..|+|+ .
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~ 79 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGH----K 79 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTE----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCe----E
Confidence 457999999999999999999999999999999987654 25999999999999999999999999998 5
Q ss_pred EEecccccC
Q 022301 180 VRVREYDHR 188 (299)
Q Consensus 180 ~~~~~~~~~ 188 (299)
+.|......
T Consensus 80 l~V~~a~~~ 88 (98)
T 2cpf_A 80 LEVRISERA 88 (98)
T ss_dssp CEEECSSCS
T ss_pred EEEEEccCC
Confidence 555555443
No 222
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.9e-15 Score=107.05 Aligned_cols=76 Identities=22% Similarity=0.304 Sum_probs=67.6
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCceeeEE
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (299)
......+|||+|||..+++++|.++|.+||.|..+.++.++. .+||||+|.+.++|+.|++.|||..|.|+.+.+.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 344668999999999999999999999999999999988753 4599999999999999999999999999955433
No 223
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.64 E-value=6.1e-16 Score=122.26 Aligned_cols=77 Identities=17% Similarity=0.353 Sum_probs=69.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCC
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 83 (299)
.++|||+|||+++|+++|.++|++||+|..|.|.. ++.++|||||+|.+.++|..|+..+ +..|.|+.|.|.+....
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 48999999999999999999999999999999954 4667899999999999999999854 56899999999997654
No 224
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.7e-15 Score=105.64 Aligned_cols=72 Identities=14% Similarity=0.295 Sum_probs=65.3
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
......+|||+|||..+++++|+++|.+||.|..+.++.++. .+||||+|.+.++|+.|++ |+|..|+|+.+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l 81 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKV 81 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEE
Confidence 345668999999999999999999999999999999988753 4699999999999999999 99999999944
No 225
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.63 E-value=5.9e-16 Score=122.97 Aligned_cols=81 Identities=23% Similarity=0.480 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 80 (299)
.+.++|||+|||.++|+++|.++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+. ++|..|.|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~-~~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-CSCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH-hCCcEECCEEEEEEec
Confidence 3568999999999999999999999999999999964 46678999999999999999999 5899999999999998
Q ss_pred cCCCC
Q 022301 81 HGGRG 85 (299)
Q Consensus 81 ~~~~~ 85 (299)
.....
T Consensus 181 ~~k~~ 185 (196)
T 1l3k_A 181 LSKQE 185 (196)
T ss_dssp C----
T ss_pred CChhH
Confidence 76543
No 226
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.7e-15 Score=107.28 Aligned_cols=80 Identities=20% Similarity=0.194 Sum_probs=69.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCceeeEEE
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~ 180 (299)
.....+|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|+.|++.|||..|+|+ .+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l 84 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR----TI 84 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTE----EE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCc----EE
Confidence 34568999999999999999999999999999999987743 46999999999999999999999999999 55
Q ss_pred EecccccC
Q 022301 181 RVREYDHR 188 (299)
Q Consensus 181 ~~~~~~~~ 188 (299)
.+....+.
T Consensus 85 ~V~~a~~~ 92 (102)
T 2cqb_A 85 RVNLAKPM 92 (102)
T ss_dssp EEEECCCC
T ss_pred EEEeCCCC
Confidence 55555444
No 227
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.7e-15 Score=106.07 Aligned_cols=74 Identities=24% Similarity=0.244 Sum_probs=66.9
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
.......+|||+|||..+++++|.++|.+||.|..+.++.+.. .|||||+|.+.++|+.|+..|||..|+|+.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 3445678999999999999999999999999999999988763 3599999999999999999999999999844
No 228
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.63 E-value=8e-16 Score=118.88 Aligned_cols=77 Identities=31% Similarity=0.589 Sum_probs=69.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCCCCCCce--EEEE
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR--LRVE 78 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~---~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~--i~v~ 78 (299)
.+.++|||+|||.++++++|.++|+.||.|..+.+.. ++.++|||||+|.+.++|..|+..|||..|.|+. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 3568999999999999999999999999999999954 4566899999999999999999999999999964 8887
Q ss_pred Ec
Q 022301 79 LA 80 (299)
Q Consensus 79 ~~ 80 (299)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 229
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.5e-15 Score=103.17 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=67.2
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
....+..+|||+|||..+++++|.++|.+||.|..+.++.++.+ +||||+|.+.++|+.|+..|||..|+|+.+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 44566789999999999999999999999999999999988654 599999999999999999999999999843
No 230
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.63 E-value=2.4e-15 Score=103.17 Aligned_cols=71 Identities=18% Similarity=0.236 Sum_probs=64.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
.+..+|||+|||..+++++|+++|.+||.|..+.+..+... |||||+|.+.++|+.|++.|||..++|+.+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 78 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 34679999999999999999999999999999999988643 599999999999999999999999999854
No 231
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.63 E-value=7.2e-15 Score=104.17 Aligned_cols=75 Identities=9% Similarity=0.194 Sum_probs=66.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCceeeEEEEeccc
Q 022301 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~~~~ 185 (299)
.+..+|||+|||..+++++|+++|.+||.|..+.++.+ ||||+|.+.++|+.|++.|||..|.|+ .+.+...
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD----YAFIHFDERDGAVKAMEEMNGKDLEGE----NIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESSHHHHHHHHHHHTTEEETTE----EEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----EEEEEeCCHHHHHHHHHHHCCCccCCC----EEEEEEc
Confidence 45689999999999999999999999999999998744 999999999999999999999999998 5555544
Q ss_pred ccC
Q 022301 186 DHR 188 (299)
Q Consensus 186 ~~~ 188 (299)
...
T Consensus 81 ~~~ 83 (103)
T 2dgu_A 81 KPP 83 (103)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 232
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.2e-15 Score=105.48 Aligned_cols=77 Identities=14% Similarity=0.217 Sum_probs=67.3
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEE-EEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCceeeEEEE
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~-~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~ 181 (299)
+..+|||+|||..+++++|.++|.+||.|..+ .++.++. .+||||+|.+.++|+.|++.|||..|+|+ .+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l~ 79 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR----PIT 79 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTE----ECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCE----EEE
Confidence 46899999999999999999999999999999 8888743 36999999999999999999999999998 444
Q ss_pred eccccc
Q 022301 182 VREYDH 187 (299)
Q Consensus 182 ~~~~~~ 187 (299)
+.....
T Consensus 80 v~~a~~ 85 (96)
T 1x5t_A 80 VSYAFK 85 (96)
T ss_dssp EEESCC
T ss_pred EEEecc
Confidence 444433
No 233
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=6.2e-15 Score=106.01 Aligned_cols=83 Identities=10% Similarity=0.157 Sum_probs=71.7
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcC------CCeec
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLD------DSEFR 172 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~------g~~~~ 172 (299)
.......+|||+|||..+++++|.++|.+||.|..|.++.+.. .+||||+|.+.++|..|++.|| |..|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 3445678999999999999999999999999999999998754 4699999999999999999999 99999
Q ss_pred CceeeEEEEecccccCC
Q 022301 173 NAFSRAYVRVREYDHRR 189 (299)
Q Consensus 173 g~~~~~~~~~~~~~~~~ 189 (299)
|+ .+.|.....+.
T Consensus 90 g~----~l~v~~a~~~~ 102 (111)
T 1x4h_A 90 GR----QLKVDLAVTRD 102 (111)
T ss_dssp SC----EEEEECCCCCC
T ss_pred CE----EEEEEECCCCc
Confidence 99 56665554443
No 234
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.63 E-value=8.4e-16 Score=108.93 Aligned_cols=79 Identities=25% Similarity=0.436 Sum_probs=69.5
Q ss_pred CCCCCeEEEcCC--CCCCC--------HHHHHHHhhhcCCeeEEEeecC-----CCCCceEEEEecChHHHHHHHHhcCC
Q 022301 3 SRASRTLYVGNL--PGDIR--------EREVEDLFYKYGPIAHIDLKIP-----PRPPGYAFVEFEEARDAEDAIRGRDG 67 (299)
Q Consensus 3 ~~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~v~~i~~~~~-----~~~~g~afV~F~~~e~A~~A~~~l~~ 67 (299)
..|+++|.|.|+ |..+. +++|+++|++||+|..|.|..+ +.++|+|||+|.+.++|.+|+..|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 478999999999 44443 3689999999999999999654 25689999999999999999999999
Q ss_pred CCCCCceEEEEEcc
Q 022301 68 YDFDGHRLRVELAH 81 (299)
Q Consensus 68 ~~~~g~~i~v~~~~ 81 (299)
..|.|+.|.|.++.
T Consensus 82 ~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 82 RKFANRVVVTKYCD 95 (105)
T ss_dssp CEETTEECEEEEEC
T ss_pred CEeCCCEEEEEEeC
Confidence 99999999999874
No 235
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3e-15 Score=103.40 Aligned_cols=76 Identities=21% Similarity=0.346 Sum_probs=66.7
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCceeeEEEEecc
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~~~ 184 (299)
.....+|||+|||..+++++|.++|.+||.|..+.+..+ ||||+|.+.++|+.|++.|||..|+|+ .+.+..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----YAFVHMEKEADAKAAIAQLNGKEVKGK----RINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESCHHHHHHHHHHHTTCEETTE----ECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC----EEEEEECCHHHHHHHHHHhCCCEECCc----EEEEEE
Confidence 345689999999999999999999999999999999855 999999999999999999999999998 444444
Q ss_pred cccC
Q 022301 185 YDHR 188 (299)
Q Consensus 185 ~~~~ 188 (299)
....
T Consensus 78 a~~~ 81 (90)
T 2dnp_A 78 STKG 81 (90)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 4433
No 236
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.1e-15 Score=106.58 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=68.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCceeeEEEEeccc
Q 022301 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~~~~ 185 (299)
....+|||+|||..+++++|+++|.+||.|..+.++.+ .+||||+|.+.++|+.|+..|+|..|+|+ .+.|...
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEGH----VVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETTE----ECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECCc----EEEEEec
Confidence 45689999999999999999999999999999999887 56999999999999999999999999998 4555544
Q ss_pred ccC
Q 022301 186 DHR 188 (299)
Q Consensus 186 ~~~ 188 (299)
...
T Consensus 97 ~~~ 99 (109)
T 1x4g_A 97 KES 99 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 237
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.9e-15 Score=104.76 Aligned_cols=83 Identities=7% Similarity=0.106 Sum_probs=71.2
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCceeeEE
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVC-FSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~-~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (299)
.....+|||+|||..+++++|.++|.+||.|. .+.++.++.. +||||+|.+.++|+.|++.|||..|.|+.....
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34568999999999999999999999999999 9999988644 599999999999999999999999999964333
Q ss_pred EEeccccc
Q 022301 180 VRVREYDH 187 (299)
Q Consensus 180 ~~~~~~~~ 187 (299)
+.+.....
T Consensus 86 l~v~~a~~ 93 (99)
T 2div_A 86 FKLNYATY 93 (99)
T ss_dssp CCEEETTC
T ss_pred EEEeecCC
Confidence 55555443
No 238
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.8e-15 Score=105.81 Aligned_cols=80 Identities=19% Similarity=0.385 Sum_probs=68.6
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC-----CCEEEEEecChhhHHHHHHhcCCCeecCceee
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~-----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (299)
.+..+..+|||+|||..+++++|+++|..|| |..|.++.+.. .|||||+|.+.++|+.|+ .|||..|.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~--- 84 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNK--- 84 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTE---
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCc---
Confidence 3445678999999999999999999999999 99999988764 369999999999999999 9999999999
Q ss_pred EEEEecccccC
Q 022301 178 AYVRVREYDHR 188 (299)
Q Consensus 178 ~~~~~~~~~~~ 188 (299)
.+.|.....+
T Consensus 85 -~l~V~~a~~~ 94 (104)
T 1wi8_A 85 -RIRVDVADQA 94 (104)
T ss_dssp -ECEEEECCCC
T ss_pred -EEEEEEccCC
Confidence 4455444443
No 239
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.63 E-value=1.3e-15 Score=128.10 Aligned_cols=76 Identities=22% Similarity=0.404 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCC-CceEEEEEcc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAH 81 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~-g~~i~v~~~~ 81 (299)
.++++|||+|||.++|+++|+++|+.||.|..|.|..+. +|||||+|.+.++|..|+..|||..|. |+.|.|.|++
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 367899999999999999999999999999999997433 589999999999999999999999999 9999999985
No 240
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.9e-15 Score=103.65 Aligned_cols=72 Identities=8% Similarity=0.079 Sum_probs=63.5
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhc--CCCeecCcee
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL--DDSEFRNAFS 176 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l--~g~~~~g~~~ 176 (299)
....+..+|||+|||..+++++|.++|.+||.|..+.++.+ .|||||+|.+.++|..|++.| ++..|.|+.+
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 33456789999999999999999999999999999988865 579999999999999999987 5678999844
No 241
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=106.83 Aligned_cols=69 Identities=7% Similarity=0.057 Sum_probs=62.3
Q ss_pred CCccEEEEeCCCC-CCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCC--eecCcee
Q 022301 106 RSEYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS--EFRNAFS 176 (299)
Q Consensus 106 ~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~--~~~g~~~ 176 (299)
.+..+|||+|||. .+++++|.++|.+||.|..+.++.++ +||||+|++.++|..|++.|++. .|.|+.+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k--g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI--NEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS--SCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 3568999999999 99999999999999999999998764 69999999999999999999865 5999944
No 242
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.62 E-value=4.9e-15 Score=105.45 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=63.4
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC---CEEEEEecChhhHHHHHHhcCCCeecC
Q 022301 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g 173 (299)
....+|||+|||..+++++|.++|.+||.|..+.++.+..+ +||||+|.+.++|+.|++.|||..+.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 45689999999999999999999999999999999988643 599999999999999999999999988
No 243
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=121.40 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcC-CeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCC-CceEEEEEcc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAH 81 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~-g~~i~v~~~~ 81 (299)
.++++|||+|||..+++++|.++|+.|| .|..|.+..+ .+|||||+|.+.++|..|+..|||..|. |+.|.|.|+.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 4589999999999999999999999999 9999999653 3789999999999999999999999999 9999999986
Q ss_pred C
Q 022301 82 G 82 (299)
Q Consensus 82 ~ 82 (299)
.
T Consensus 196 ~ 196 (198)
T 1qm9_A 196 S 196 (198)
T ss_dssp C
T ss_pred c
Confidence 4
No 244
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=8e-15 Score=103.93 Aligned_cols=80 Identities=19% Similarity=0.300 Sum_probs=68.6
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCceeeE
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (299)
.+..+..+|||+|||..+++++|+++|.+|| |..+.++.+..+ |||||+|.+.++|+.|+ .|||..|.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~---- 83 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDR---- 83 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTE----
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCe----
Confidence 4455678999999999999999999999997 999999988753 59999999999999999 8999999999
Q ss_pred EEEecccccC
Q 022301 179 YVRVREYDHR 188 (299)
Q Consensus 179 ~~~~~~~~~~ 188 (299)
.+.|......
T Consensus 84 ~l~V~~a~~~ 93 (103)
T 2dng_A 84 SLRVDIAEGR 93 (103)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEEecCC
Confidence 4455444433
No 245
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.62 E-value=4.1e-15 Score=101.05 Aligned_cols=68 Identities=16% Similarity=0.273 Sum_probs=63.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
++|||+|||..+++++|.++|.+||.|..+.++.++.. |||||+|.+.++|+.|+..|||..++|+.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 73 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 73 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 68999999999999999999999999999999988553 599999999999999999999999999844
No 246
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=5.9e-15 Score=105.41 Aligned_cols=74 Identities=16% Similarity=0.297 Sum_probs=66.5
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCC-----CCCEEEEEecChhhHHHHHHhc-CCCeecCcee
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-----SGTTGIVDYTNYDDMKHAIKKL-DDSEFRNAFS 176 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~-----~~~~~fv~f~~~~~a~~a~~~l-~g~~~~g~~~ 176 (299)
.......+|||+|||..+++++|+++|.+||.|..|.++.+. ..+||||+|.+.++|+.|+..| ||..|.|+.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 445567899999999999999999999999999999998772 2469999999999999999999 9999999944
No 247
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1e-14 Score=102.86 Aligned_cols=81 Identities=19% Similarity=0.351 Sum_probs=70.2
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC---CEEEEEecChhhHHHHHHhcCCCeecCceeeEEE
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~ 180 (299)
......+|||+|||..+++++|.++|.+||.|..+.++.+..+ +||||+|.+.++|+.|++.|||..|+|+ .+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l 88 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKEN----II 88 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSC----EE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCE----EE
Confidence 3455689999999999999999999999999999999988732 5999999999999999999999999998 55
Q ss_pred EecccccC
Q 022301 181 RVREYDHR 188 (299)
Q Consensus 181 ~~~~~~~~ 188 (299)
.+....+.
T Consensus 89 ~v~~a~~~ 96 (100)
T 2do4_A 89 KVAISNSG 96 (100)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 55554443
No 248
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.62 E-value=3e-14 Score=106.76 Aligned_cols=82 Identities=16% Similarity=0.194 Sum_probs=71.4
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCceeeE
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (299)
.......+|||+|||..+++++|.++|..||.|..|.++.+..+ |||||+|.+.++|.+|++.|||..|.|+
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---- 112 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK---- 112 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC----
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe----
Confidence 34456789999999999999999999999999999999988653 5999999999999999999999999999
Q ss_pred EEEecccccC
Q 022301 179 YVRVREYDHR 188 (299)
Q Consensus 179 ~~~~~~~~~~ 188 (299)
.+.|......
T Consensus 113 ~l~v~~a~~~ 122 (139)
T 1u6f_A 113 RLKVALAASG 122 (139)
T ss_dssp EEEEEESSCC
T ss_pred EEEEEECCCC
Confidence 5555554443
No 249
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.62 E-value=3.4e-15 Score=101.99 Aligned_cols=71 Identities=20% Similarity=0.191 Sum_probs=64.9
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
.+..+|||+|||..+++++|.++|.+||.|..+.++.+.. .+||||+|.+.++|+.|++.|||..++|+.+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 79 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 79 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 4568999999999999999999999999999999987743 3599999999999999999999999999854
No 250
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.61 E-value=3.2e-15 Score=104.59 Aligned_cols=69 Identities=13% Similarity=0.257 Sum_probs=64.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 108 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
..+|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|+.|++.|+|..++|+.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 74 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFL 74 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 47999999999999999999999999999999988754 4699999999999999999999999999844
No 251
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.61 E-value=3.4e-15 Score=103.78 Aligned_cols=70 Identities=14% Similarity=0.220 Sum_probs=62.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCe--ecCcee
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE--FRNAFS 176 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~--~~g~~~ 176 (299)
..+..+|||+|||..+++++|.++|.+||.|..+.++.. .|||||+|++.++|..|++.|+|.. |.|+.+
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~--kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK--KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 346689999999999999999999999999999998854 4699999999999999999999886 779833
No 252
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=3e-15 Score=104.91 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=63.8
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeec--Ccee
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR--NAFS 176 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~--g~~~ 176 (299)
..+..+|||+|||..+++++|.++|.+||.|..+.+..+ .+||||+|.+.++|+.|++.|||..|. |+.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l 85 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRL 85 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEE
Confidence 345689999999999999999999999999999998866 569999999999999999999999999 8743
No 253
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.61 E-value=5.2e-15 Score=105.52 Aligned_cols=73 Identities=15% Similarity=0.220 Sum_probs=65.5
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCee---cCcee
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEF---RNAFS 176 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~---~g~~~ 176 (299)
......+|||+|||..+++++|+++|.+||.|..+.++.++. .+||||+|.+.++|+.|++.|||..+ .|+.+
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 445678999999999999999999999999999999988754 46999999999999999999999987 77743
No 254
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=105.68 Aligned_cols=76 Identities=16% Similarity=0.261 Sum_probs=65.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhc-CCCeecCceeeEEEEe
Q 022301 109 YRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKL-DDSEFRNAFSRAYVRV 182 (299)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l-~g~~~~g~~~~~~~~~ 182 (299)
.+|||+|||..+++++|.++|.+|| .|..|.++.++. .|||||+|.+.++|+.|++.+ ++..++|+ .+.+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr----~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQ----KVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTE----EEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCE----EEEE
Confidence 5899999999999999999999999 899999987754 369999999999999999987 56679998 5666
Q ss_pred cccccC
Q 022301 183 REYDHR 188 (299)
Q Consensus 183 ~~~~~~ 188 (299)
..+.++
T Consensus 78 ~~a~~~ 83 (91)
T 2lxi_A 78 HYSDPK 83 (91)
T ss_dssp ECCCSC
T ss_pred EEcCCC
Confidence 555443
No 255
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.61 E-value=2.8e-15 Score=122.10 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcC-CeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCC-CceEEEEEcc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAH 81 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~-g~~i~v~~~~ 81 (299)
.++++|||+|||.++++++|+++|+.|| +|..|.+... .+|||||+|.+.++|.+|+..|||..|. |+.|.|.|+.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS--STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC--CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 3579999999999999999999999999 9999999543 4789999999999999999999999999 9999999986
Q ss_pred C
Q 022301 82 G 82 (299)
Q Consensus 82 ~ 82 (299)
.
T Consensus 227 ~ 227 (229)
T 2adc_A 227 S 227 (229)
T ss_dssp S
T ss_pred C
Confidence 4
No 256
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=3.2e-15 Score=107.46 Aligned_cols=82 Identities=13% Similarity=0.137 Sum_probs=71.1
Q ss_pred CCCCccEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEEeCCCC-------CEEEEEecChhhHHHHHHhcCCCeecC
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLK---DHMRRAGDVCFSQVFRDGSG-------TTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~---~~f~~~G~v~~~~~~~~~~~-------~~~fv~f~~~~~a~~a~~~l~g~~~~g 173 (299)
......+|||+|||..+++++|. ++|.+||+|..+.++.+... |||||+|.+.++|+.|++.|||..|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34456899999999999999999 99999999999999887642 699999999999999999999999999
Q ss_pred ceeeEEEEecccccCC
Q 022301 174 AFSRAYVRVREYDHRR 189 (299)
Q Consensus 174 ~~~~~~~~~~~~~~~~ 189 (299)
+ .+.|.....+.
T Consensus 91 r----~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 R----TLKASLGTTKY 102 (111)
T ss_dssp E----EEEEESCCCCS
T ss_pred E----EEEEEeccccc
Confidence 9 66666555443
No 257
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3e-14 Score=102.89 Aligned_cols=73 Identities=22% Similarity=0.326 Sum_probs=66.6
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC---CEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
......+|||+|||..+++++|+++|.+||.|..+.++.+..+ +||||+|.+.++|+.|++.|||..|+|+.+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPM 86 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEE
Confidence 3455789999999999999999999999999999999988653 499999999999999999999999999854
No 258
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.7e-14 Score=101.43 Aligned_cols=77 Identities=19% Similarity=0.187 Sum_probs=66.9
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCceeeEEEE
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~ 181 (299)
......+|||+|||..+++++|+++|.+| |.|..+.+.. +||||+|.+.++|+.|+..|||..|.|+ .+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~----g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR----DYAFVHFSNREDAVEAMKALNGKVLDGS----PIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS----SEEEEEESSHHHHHHHHHHHSSEEETTE----EEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC----CeEEEEeCCHHHHHHHHHHhCCCEeCCc----EEE
Confidence 34466899999999999999999999999 8999888763 4999999999999999999999999998 566
Q ss_pred ecccccC
Q 022301 182 VREYDHR 188 (299)
Q Consensus 182 ~~~~~~~ 188 (299)
+......
T Consensus 83 v~~a~~~ 89 (99)
T 2cpd_A 83 VTLAKPV 89 (99)
T ss_dssp EECCCCC
T ss_pred EEECCCC
Confidence 6555443
No 259
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.7e-15 Score=105.28 Aligned_cols=73 Identities=18% Similarity=0.312 Sum_probs=66.9
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
......+|||+|||..+++++|.++|..||.|..+.+..+..+ |||||+|.+.++|+.|+..|||..|+|+.+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 95 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 95 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 3456789999999999999999999999999999999988664 599999999999999999999999999855
No 260
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=3.3e-15 Score=105.57 Aligned_cols=67 Identities=18% Similarity=0.228 Sum_probs=63.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
++|||+|||..+++++|.++|.+||.|..+.+..+ ..+||||+|.+.++|+.|++.|+|..++|+.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 67 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRV 67 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEE
Confidence 47999999999999999999999999999999988 66799999999999999999999999999954
No 261
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.61 E-value=7.7e-15 Score=105.34 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=61.8
Q ss_pred CCccEEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 106 RSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 106 ~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
....+|||+|||.. +++++|+++|.+||.|..+.+ ..+||||+|.+.++|+.|++.|||..|+|+.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 92 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAGQTL 92 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETTEEC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 34579999999999 999999999999999999998 35699999999999999999999999999844
No 262
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.5e-15 Score=107.43 Aligned_cols=71 Identities=7% Similarity=0.071 Sum_probs=63.7
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCC--CeecCcee
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD--SEFRNAFS 176 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g--~~~~g~~~ 176 (299)
...+..+|||+|||+.+++++|+++|.+||.|..+.++.+ .|||||+|++.++|..|++.|++ ..|.|+.+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 3456789999999999999999999999999999999876 46999999999999999999874 68999844
No 263
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.60 E-value=4e-15 Score=106.26 Aligned_cols=77 Identities=16% Similarity=0.223 Sum_probs=67.1
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCceeeEEEEe
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~ 182 (299)
.......+|||+|||..+++++|.++|.+||.|..+.+. .|||||+|.+.++|+.|+..|||..++|+ .+.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~----~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQ----PLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTE----ECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCe----EEEE
Confidence 344567899999999999999999999999999999998 57999999999999999999999999998 5555
Q ss_pred ccccc
Q 022301 183 REYDH 187 (299)
Q Consensus 183 ~~~~~ 187 (299)
.....
T Consensus 98 ~~a~~ 102 (108)
T 2jvo_A 98 VYSKL 102 (108)
T ss_dssp ESCSC
T ss_pred EEecC
Confidence 54443
No 264
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.60 E-value=6.8e-15 Score=103.52 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=67.2
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCe
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSE 170 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--------~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~ 170 (299)
......++|||+|||..+++++|+++|.+||.|.. +.++.++.+ |||||+|.+.++|+.|++.|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 44556789999999999999999999999999999 999988653 599999999999999999999999
Q ss_pred ecCcee
Q 022301 171 FRNAFS 176 (299)
Q Consensus 171 ~~g~~~ 176 (299)
+.|+.+
T Consensus 88 ~~g~~l 93 (99)
T 2la6_A 88 FSGNPI 93 (99)
T ss_dssp SSSSBC
T ss_pred eCCcEE
Confidence 999854
No 265
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=8.7e-15 Score=105.96 Aligned_cols=72 Identities=8% Similarity=0.096 Sum_probs=64.9
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCe----eEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v----~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
..+..+|||+|||..+++++|.++|.+||.| ..+.+......|||||+|.+.++|+.|+..|||..|.|+.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3456899999999999999999999999998 67777766667899999999999999999999999999944
No 266
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=8.6e-15 Score=105.63 Aligned_cols=81 Identities=21% Similarity=0.369 Sum_probs=69.8
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCee
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVC--------FSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEF 171 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~--------~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~ 171 (299)
......+|||+|||..+++++|+++|.+||.|. .+.++.+.. .+||||+|.+.++|+.|++.|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999998 688888744 35999999999999999999999999
Q ss_pred cCceeeEEEEecccccC
Q 022301 172 RNAFSRAYVRVREYDHR 188 (299)
Q Consensus 172 ~g~~~~~~~~~~~~~~~ 188 (299)
.|+ .+.|......
T Consensus 91 ~g~----~l~V~~a~~~ 103 (113)
T 2cpe_A 91 QGS----KLKVSLARKK 103 (113)
T ss_dssp TTE----ECEEECSSCC
T ss_pred CCC----EEEEEECCCC
Confidence 998 5555555444
No 267
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=6.8e-15 Score=102.48 Aligned_cols=74 Identities=16% Similarity=0.240 Sum_probs=66.8
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
.......+|||+|||..+++++|.++|.+||.|..+.+..++. .+||||+|.+.++|+.|++.|||..|.|+.+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 3445678999999999999999999999999999999988754 3699999999999999999999999999844
No 268
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=8.2e-15 Score=103.09 Aligned_cols=71 Identities=15% Similarity=0.216 Sum_probs=64.7
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
...+..+|||+|||..+++++|+++|.+||.|..+.+..+ .+||||+|.+.++|++|++.|||..|.|+.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~--kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l 81 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD--KGFGFIRLETRTLAEIAKVELDNMPLRGKQL 81 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT--TTEEEEECSSSHHHHHHHHHHTTCCBTTBCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC--CCEEEEEECCHHHHHHHHHHhCCCEeCCceE
Confidence 3446689999999999999999999999999999998865 5699999999999999999999999999844
No 269
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=5.9e-15 Score=104.32 Aligned_cols=70 Identities=20% Similarity=0.283 Sum_probs=62.2
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCC--eecCcee
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS--EFRNAFS 176 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~--~~~g~~~ 176 (299)
..+..+|||+|||..+++++|+++|.+||.|..+.++.+ .+||||+|.+.++|..|++.|++. .|.|+.+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 446689999999999999999999999999999988765 579999999999999999998765 4889844
No 270
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.60 E-value=1.2e-14 Score=103.86 Aligned_cols=76 Identities=20% Similarity=0.207 Sum_probs=68.2
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC---CEEEEEecChhhHHHHHHhcCCCeecCceeeE
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (299)
....+..+|||+|||..+++++|+++|.+||.|..+.++.+..+ +||||+|.+.++|+.|++.|||..|.|+.+.+
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 44567789999999999999999999999999999999988632 49999999999999999999999999985543
No 271
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=9.9e-15 Score=103.65 Aligned_cols=80 Identities=20% Similarity=0.201 Sum_probs=69.0
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEeCCCC---CEEEEEecChhhHHHHHHhcCCCe-ecCceeeE
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSE-FRNAFSRA 178 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~-~~g~~~~~ 178 (299)
...+..+|||+|||..+++++|.++|.+ ||.|..+.++.+..+ +||||+|.+.++|..|++.|+|.. |+|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~---- 80 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK---- 80 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS----
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCE----
Confidence 3456689999999999999999999999 999999999988632 499999999999999999999999 9998
Q ss_pred EEEeccccc
Q 022301 179 YVRVREYDH 187 (299)
Q Consensus 179 ~~~~~~~~~ 187 (299)
.+.+.....
T Consensus 81 ~l~v~~a~~ 89 (104)
T 2dhg_A 81 PVRLSVAIP 89 (104)
T ss_dssp CCCCCBCCC
T ss_pred eEEEEEccC
Confidence 444444433
No 272
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.60 E-value=4.8e-15 Score=109.33 Aligned_cols=81 Identities=20% Similarity=0.219 Sum_probs=70.3
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCceeeE
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (299)
....+..+|||+|||..+++++|+++|.+||.|..|.++.++. .|||||+|.+.++|+.|++.|+|..|+|+
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~---- 116 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR---- 116 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS----
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE----
Confidence 3445678999999999999999999999999999999998753 46999999999999999999999999998
Q ss_pred EEEeccccc
Q 022301 179 YVRVREYDH 187 (299)
Q Consensus 179 ~~~~~~~~~ 187 (299)
.+.|.....
T Consensus 117 ~l~V~~a~~ 125 (129)
T 2kxn_B 117 RIRVDFSIT 125 (129)
T ss_dssp CCEESCCSS
T ss_pred EEEEEEecC
Confidence 555555443
No 273
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.60 E-value=1.4e-15 Score=121.46 Aligned_cols=77 Identities=14% Similarity=0.216 Sum_probs=67.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCe--eEEEeecC-CCCCceEEEEecChHHHHHHHHhcCCCCCCCc----eEE
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPI--AHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH----RLR 76 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v--~~i~~~~~-~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~----~i~ 76 (299)
.++++|||+|||+++|+++|+++|++||.| ..+.+..+ +..+|||||+|.+.++|..||..|||..|.|. ++.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 357899999999999999999999999999 89998654 34569999999999999999999999999876 577
Q ss_pred EEEc
Q 022301 77 VELA 80 (299)
Q Consensus 77 v~~~ 80 (299)
|+++
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 7665
No 274
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.9e-14 Score=102.38 Aligned_cols=82 Identities=13% Similarity=0.217 Sum_probs=71.5
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCceeeE
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (299)
.......+|||+|||..+++++|+++|.+||.|..|.++.++.. +||||+|.+.++|+.|+.. +|..|+|+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~---- 85 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGR---- 85 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTE----
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCE----
Confidence 34556789999999999999999999999999999999998654 5999999999999999998 99999998
Q ss_pred EEEecccccCC
Q 022301 179 YVRVREYDHRR 189 (299)
Q Consensus 179 ~~~~~~~~~~~ 189 (299)
.+.|....++.
T Consensus 86 ~l~V~~a~~~~ 96 (105)
T 2dh8_A 86 NIDPKPCTPRG 96 (105)
T ss_dssp EEBCCCSCCSS
T ss_pred EEEEEEccCCC
Confidence 66666655443
No 275
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.60 E-value=1.6e-15 Score=104.81 Aligned_cols=75 Identities=15% Similarity=0.178 Sum_probs=63.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCceeeEEEEe
Q 022301 109 YRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (299)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~ 182 (299)
.+|||+|||..+++++|.++|.+|| .|..+.++.+..+ |||||+|.+.++|+.|++.|||..|+|+ .+.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr----~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ----NPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSC----CCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCE----EEEE
Confidence 5799999999999999999999999 9999999998644 4999999999999999999999999999 5555
Q ss_pred ccccc
Q 022301 183 REYDH 187 (299)
Q Consensus 183 ~~~~~ 187 (299)
....+
T Consensus 78 ~~~~~ 82 (90)
T 3p5t_L 78 TPSNK 82 (90)
T ss_dssp CCC--
T ss_pred EECCC
Confidence 54444
No 276
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.60 E-value=1.2e-14 Score=111.19 Aligned_cols=71 Identities=13% Similarity=0.196 Sum_probs=65.8
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
....+|||.|||..+++++|+++|.+||.|..|.|+.+..+ +||||+|.+.++|++||+.|||..|+|+.+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 111 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRII 111 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 45689999999999999999999999999999999988754 499999999999999999999999999944
No 277
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.6e-15 Score=106.24 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=66.9
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC--CCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~--~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
.......+|||+|||..+++++|+++|.+||.|..+.+..+.. .|||||+|.+.++|+.|++.|+|..|+|+.+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 4455678999999999999999999999999999999987753 4699999999999999999999999999844
No 278
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.59 E-value=8.4e-15 Score=102.53 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=63.0
Q ss_pred CCCCCccEEEEeCCCC-CCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 103 VSRRSEYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
.......+|||+|||. .+++++|.++|.+||.|..+.+. .|||||+|.+.++|+.|++.|||..++|+.+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3455678999999998 99999999999999999999884 5699999999999999999999999999844
No 279
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.59 E-value=7.6e-15 Score=105.39 Aligned_cols=74 Identities=14% Similarity=0.175 Sum_probs=66.7
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
.......+|||+|||..+++++|.++|.+||.|..+.++.+.. .|||||+|.+.++|+.|+..|||..|+|+.+
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 98 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 98 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 3445678999999999999999999999999999999988754 3699999999999999999999999999844
No 280
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.59 E-value=1.2e-14 Score=103.88 Aligned_cols=74 Identities=16% Similarity=0.201 Sum_probs=66.9
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
.......+|||+|||..+++++|.++|.+||.|..+.++.++.. |||||+|.+.++|+.|++.|+|..|+|+.+
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34456689999999999999999999999999999999988654 599999999999999999999999999944
No 281
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.59 E-value=7.9e-15 Score=110.98 Aligned_cols=68 Identities=19% Similarity=0.253 Sum_probs=63.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecC
Q 022301 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g 173 (299)
.....|||+||++.+++++|.++|.+||.|..|.+......+||||+|.+.++|+.|++.|||..|.|
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g 111 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN 111 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSS
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 34568999999999999999999999999999999877667799999999999999999999999976
No 282
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.59 E-value=1.4e-14 Score=101.08 Aligned_cols=74 Identities=18% Similarity=0.225 Sum_probs=66.7
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC---CEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
.......+|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|+.|++.|||..|.|+.+
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEE
Confidence 34456789999999999999999999999999999999988653 599999999999999999999999999844
No 283
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.59 E-value=1.1e-14 Score=100.96 Aligned_cols=72 Identities=17% Similarity=0.380 Sum_probs=65.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC--CCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~--~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
.....+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|++.|||..|+|+.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 78 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREI 78 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 44668999999999999999999999999999999987532 3699999999999999999999999999944
No 284
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.4e-15 Score=102.79 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=63.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCC-CeecCceeeEEEEec
Q 022301 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD-SEFRNAFSRAYVRVR 183 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g-~~~~g~~~~~~~~~~ 183 (299)
....+|||+|||..+++++|+++|.+||. |..+.+. ..+||||+|.+.++|+.|++.||| ..|+|+ .+.+.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~----~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHGK----IMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETTE----ECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECCE----EEEEE
Confidence 45579999999999999999999999999 5555553 346999999999999999999999 999998 44554
Q ss_pred ccccC
Q 022301 184 EYDHR 188 (299)
Q Consensus 184 ~~~~~ 188 (299)
.....
T Consensus 79 ~a~~~ 83 (93)
T 2cqh_A 79 YSVSK 83 (93)
T ss_dssp ECCCC
T ss_pred EccCc
Confidence 44433
No 285
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.59 E-value=5e-14 Score=103.32 Aligned_cols=76 Identities=18% Similarity=0.130 Sum_probs=68.3
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCC---CCCEEEEEecChhhHHHHHHhcCCCeecCceeeE
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (299)
......++|||+|||..+++++|.++|..||.|..+.+..+. ..|||||+|.+.++|+.|+..|||..|+|+.+.+
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 455677899999999999999999999999999999999876 3469999999999999999999999999995433
No 286
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=6.1e-15 Score=104.17 Aligned_cols=81 Identities=16% Similarity=0.244 Sum_probs=64.7
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCceeeEEEEec
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~~ 183 (299)
......+|||+|||..+++++|+++|.+||.|..+........+||||+|.+.++|++|+..|||..|.|+ .+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGR----AIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTE----EEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCe----EEEEE
Confidence 34567899999999999999999999999988322221223456999999999999999999999999998 55555
Q ss_pred ccccC
Q 022301 184 EYDHR 188 (299)
Q Consensus 184 ~~~~~ 188 (299)
.....
T Consensus 87 ~a~~~ 91 (101)
T 2fc9_A 87 LQGPR 91 (101)
T ss_dssp ECSSC
T ss_pred EcCCC
Confidence 54443
No 287
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.59 E-value=3.1e-15 Score=103.95 Aligned_cols=73 Identities=7% Similarity=0.094 Sum_probs=63.2
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCC--eeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCC----eecC
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDS----EFRN 173 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~--v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~----~~~g 173 (299)
......+|||+|||+.+|+++|.++|++||. |..|.++.++. .|||||+|.+.++|+.|++.|||. .|+|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3445679999999999999999999999995 66888888754 369999999999999999999997 4889
Q ss_pred cee
Q 022301 174 AFS 176 (299)
Q Consensus 174 ~~~ 176 (299)
+.+
T Consensus 85 r~i 87 (95)
T 2lkz_A 85 KTI 87 (95)
T ss_dssp EEE
T ss_pred EEE
Confidence 843
No 288
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=7.5e-15 Score=102.68 Aligned_cols=73 Identities=22% Similarity=0.323 Sum_probs=66.8
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEE-EEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~-~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
......+|||+|||..+++++|+++|.+||.|..+ .++.++..+.|||+|.+.++|+.|+..|||..|+|+.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 84 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTL 84 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 34456899999999999999999999999999999 58888877789999999999999999999999999954
No 289
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.58 E-value=3.1e-15 Score=127.24 Aligned_cols=77 Identities=18% Similarity=0.323 Sum_probs=67.7
Q ss_pred CCCCCCeEEEcC--CCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCC---Cc--e
Q 022301 2 SSRASRTLYVGN--LPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD---GH--R 74 (299)
Q Consensus 2 ~~~~~~~l~V~n--Lp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~---g~--~ 74 (299)
++.|+++|||+| |+..+|+++|.++|++||+|..|.|.. ++|||||+|.+.++|++|+..|||..+. |+ .
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 568999999999 578999999999999999999998853 5899999999999999999999998773 44 5
Q ss_pred EEEEEcc
Q 022301 75 LRVELAH 81 (299)
Q Consensus 75 i~v~~~~ 81 (299)
|.|.|+.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7777764
No 290
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.2e-14 Score=102.47 Aligned_cols=73 Identities=18% Similarity=0.204 Sum_probs=65.8
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
.......+|||.|||..+++++|+++|.+||.|..+.++.++. .+||||+|.+.++|+.|++.|++ .|.|+.+
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEE
Confidence 4455678999999999999999999999999999999988754 36999999999999999999998 8999844
No 291
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=8.1e-15 Score=102.93 Aligned_cols=73 Identities=14% Similarity=0.165 Sum_probs=64.2
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
.....++|||+|||..+++++|+++|.+||.|..+.++.+... +||||+|.+.++|+.|++.|||..|+|+.+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 87 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 3445689999999999999999999999999987766666443 599999999999999999999999999844
No 292
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.7e-14 Score=99.80 Aligned_cols=77 Identities=25% Similarity=0.384 Sum_probs=65.2
Q ss_pred CCCCeEEEcCCC-------CCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEE
Q 022301 4 RASRTLYVGNLP-------GDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (299)
Q Consensus 4 ~~~~~l~V~nLp-------~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~ 76 (299)
...+.|.|.-.. .++++++|+++|++||+|..|.|. +.++|||||+|.+.++|..|+..+++ +.|++|.
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~ 83 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLK 83 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCE
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEE
Confidence 345677776654 458999999999999999999997 46789999999999999999997554 6799999
Q ss_pred EEEccCCC
Q 022301 77 VELAHGGR 84 (299)
Q Consensus 77 v~~~~~~~ 84 (299)
|.|+....
T Consensus 84 V~~a~~~~ 91 (100)
T 2d9o_A 84 ISWLEGQP 91 (100)
T ss_dssp EECSSCCC
T ss_pred EEEccCCC
Confidence 99987654
No 293
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.1e-14 Score=102.91 Aligned_cols=68 Identities=13% Similarity=0.128 Sum_probs=62.9
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCce
Q 022301 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (299)
...++|||+|||..+++++|.++|.+||.|..+.+. ...+||||+|.+.++|..|+..|||..|+|+.
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 92 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQGRN 92 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 346899999999999999999999999999999988 44579999999999999999999999999983
No 294
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.2e-14 Score=101.70 Aligned_cols=73 Identities=16% Similarity=0.156 Sum_probs=64.4
Q ss_pred CCCccEEEEeCCCC-CCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCceeeEEEE
Q 022301 105 RRSEYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (299)
Q Consensus 105 ~~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~ 181 (299)
..+..+|||+|||. .+++++|.++|.+||.|..+.+. .+||||+|.+.++|+.|+..|||..+.|+.+.+...
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 34568999999998 99999999999999999999985 469999999999999999999999999996644443
No 295
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.58 E-value=2.9e-14 Score=103.67 Aligned_cols=75 Identities=21% Similarity=0.290 Sum_probs=67.4
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCceee
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (299)
.......+|||+|||..+++++|+++|.+||.|..+.++.++. .|||||+|.+.++|+.|++.|||..|+|+.+.
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3455678999999999999999999999999999999987754 46999999999999999999999999998543
No 296
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.6e-14 Score=98.65 Aligned_cols=72 Identities=14% Similarity=0.193 Sum_probs=65.2
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhc-CCCeecCcee
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL-DDSEFRNAFS 176 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l-~g~~~~g~~~ 176 (299)
+......+|||+|||..+++++|.++|.+||.|..+.+..+ .+||||+|.+.++|..|+..| +|..++|+.+
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~--kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR--QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC--CCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 34456689999999999999999999999999999999875 469999999999999999999 9999999854
No 297
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.57 E-value=3.4e-14 Score=103.16 Aligned_cols=76 Identities=9% Similarity=0.080 Sum_probs=63.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCE-EEEEecChhhHHHHHHhcCCCeecCceeeEEEEeccc
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTT-GIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~-~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~~~~ 185 (299)
....|||+||++.+++++|.++|.+||.|..|.++.. .|| |||+|.+.++|..|++.|||..|.|... .+.+..+
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~--~l~V~~A 99 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAGCC--TLKIEYA 99 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBS--EEEEECC
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCe--EEEEEEe
Confidence 3456789999999999999999999999999998764 375 9999999999999999999999998433 3444444
Q ss_pred c
Q 022301 186 D 186 (299)
Q Consensus 186 ~ 186 (299)
.
T Consensus 100 k 100 (124)
T 2e5i_A 100 R 100 (124)
T ss_dssp S
T ss_pred c
Confidence 3
No 298
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.57 E-value=2.2e-14 Score=98.76 Aligned_cols=74 Identities=18% Similarity=0.326 Sum_probs=65.6
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCceeeEEEEec
Q 022301 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (299)
Q Consensus 108 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~~ 183 (299)
..+|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|+.|+ .|||..+.|+ .+.+.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~----~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGR----QIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTE----ECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCc----EEEEE
Confidence 46899999999999999999999999999999998853 359999999999999999 9999999999 45554
Q ss_pred ccc
Q 022301 184 EYD 186 (299)
Q Consensus 184 ~~~ 186 (299)
...
T Consensus 81 ~a~ 83 (89)
T 3ucg_A 81 PKR 83 (89)
T ss_dssp ETT
T ss_pred Ecc
Confidence 443
No 299
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.7e-15 Score=102.51 Aligned_cols=70 Identities=19% Similarity=0.288 Sum_probs=64.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCce
Q 022301 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (299)
.+..+|||+|||..+++++|+++|.+||.|..+.++.++. .|||||+|.+.++|+.|++.|||..|.|+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQM 76 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEE
Confidence 3567999999999999999999999999999999988754 469999999999999999999999999973
No 300
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.56 E-value=7.8e-15 Score=103.32 Aligned_cols=70 Identities=20% Similarity=0.209 Sum_probs=64.7
Q ss_pred CccEEEEeCCCC------CCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecC-ce
Q 022301 107 SEYRVLVTGLPS------SASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRN-AF 175 (299)
Q Consensus 107 ~~~~l~v~nl~~------~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g-~~ 175 (299)
..++|||+|||. .+++++|.++|.+||.|..+.++.++.+ |||||+|.+.++|+.|++.|||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 457999999999 9999999999999999999999988753 699999999999999999999999999 84
Q ss_pred e
Q 022301 176 S 176 (299)
Q Consensus 176 ~ 176 (299)
+
T Consensus 85 l 85 (100)
T 3ns6_A 85 L 85 (100)
T ss_dssp C
T ss_pred E
Confidence 4
No 301
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=1.7e-14 Score=105.66 Aligned_cols=72 Identities=11% Similarity=0.139 Sum_probs=63.3
Q ss_pred CCCccEEEEeCCCCCCCHHHHH----HHHHhcCCeeEEEEEeC-CCCCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 105 RRSEYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRD-GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~----~~f~~~G~v~~~~~~~~-~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
..+..+|||+|||..+++++|+ ++|.+||.|..|.+..+ ...|||||+|.+.++|..|+..|||..|.|+.+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3456899999999999998876 69999999999888653 445799999999999999999999999999955
No 302
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.2e-13 Score=97.81 Aligned_cols=80 Identities=21% Similarity=0.328 Sum_probs=67.7
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCceeeE
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (299)
.......+|||+|||..+++++|+++|.+||.|..+.++.++.. |||||+|.+.++|+.|+.. +..|+|+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~---- 83 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGR---- 83 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTE----
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCe----
Confidence 34456689999999999999999999999999999999988653 5999999999999999994 6789998
Q ss_pred EEEecccccC
Q 022301 179 YVRVREYDHR 188 (299)
Q Consensus 179 ~~~~~~~~~~ 188 (299)
.+.+.....+
T Consensus 84 ~l~v~~a~~~ 93 (103)
T 2cqg_A 84 WCDCKLPNSK 93 (103)
T ss_dssp EEEEECCCTT
T ss_pred EEEEEecCCC
Confidence 5555555443
No 303
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4e-14 Score=102.60 Aligned_cols=80 Identities=15% Similarity=0.253 Sum_probs=69.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCceeeEEEE
Q 022301 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~ 181 (299)
....+|||+|||..+++++|+++|.+||.|..|.++.++. .|||||+|.+.++|+.|+.. +|..|+|+ .+.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~----~l~ 99 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGR----VVE 99 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTE----EEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCE----EEE
Confidence 3568999999999999999999999999999999998754 36999999999999999998 99999998 666
Q ss_pred ecccccCCC
Q 022301 182 VREYDHRRD 190 (299)
Q Consensus 182 ~~~~~~~~~ 190 (299)
|.....+..
T Consensus 100 V~~a~~~~~ 108 (116)
T 1x4b_A 100 PKRAVAREE 108 (116)
T ss_dssp EECCSSCCC
T ss_pred EEECCCCcc
Confidence 666555433
No 304
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=9e-14 Score=97.31 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=65.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCceeeEEEEecc
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~~~ 184 (299)
.....+|||+|| .+++++|.++|.+||.|..+.+. ...+||||+|.+.++|+.|+..|||..|.|+ .+.|..
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~----~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESV----QLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETTE----EEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECCe----EEEEEE
Confidence 345689999996 89999999999999999999885 4557999999999999999999999999998 566655
Q ss_pred cccC
Q 022301 185 YDHR 188 (299)
Q Consensus 185 ~~~~ 188 (299)
....
T Consensus 84 a~~~ 87 (97)
T 1x5p_A 84 ARKQ 87 (97)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 5444
No 305
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.56 E-value=7.7e-15 Score=99.20 Aligned_cols=68 Identities=10% Similarity=0.118 Sum_probs=60.8
Q ss_pred cEEEEeCCCCCC------CHHHHHHHHHhcCCeeEEEEEeC--CCCCEEEEEecChhhHHHHHHhcCCCeecCc-ee
Q 022301 109 YRVLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRD--GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA-FS 176 (299)
Q Consensus 109 ~~l~v~nl~~~~------~~~~l~~~f~~~G~v~~~~~~~~--~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~-~~ 176 (299)
++|||+|||..+ ++++|.++|.+||.|..+.+... ...|||||+|.+.++|+.|+..|||..++|+ .+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 689999999999 77999999999999999988743 2347999999999999999999999999997 44
No 306
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.3e-14 Score=101.23 Aligned_cols=73 Identities=16% Similarity=0.256 Sum_probs=65.9
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC---CCEEEEEecChhhHHHHHHhcCCCeecCceeeEE
Q 022301 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (299)
....+|||+|||..+++++|.++|.+||+|..|.++.+.. .|||||+|.+.++|+.|+. ++|..|+|+.+.+.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 4568999999999999999999999999999999998754 4699999999999999999 99999999976444
No 307
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.9e-15 Score=105.98 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=64.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
....+|||+|||..+++++|+++|..||.|..|.++.+.. .|||||+|.+.++|+.|+ .|||..|+|+.+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 96 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPI 96 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEE
Confidence 3567999999999999999999999999999999988764 369999999999999999 999999999843
No 308
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.56 E-value=4.5e-14 Score=96.78 Aligned_cols=72 Identities=17% Similarity=0.272 Sum_probs=64.0
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
......+|||+|||..+++++|.++|.+||.|..+.++.++.+ |||||+|.+.++|+.|++ +++..|+|+.+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i 82 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVI 82 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEE
Confidence 3456689999999999999999999999999999999988653 599999999999999996 58888999844
No 309
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.55 E-value=2.5e-14 Score=108.94 Aligned_cols=70 Identities=14% Similarity=0.084 Sum_probs=64.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
...+|||+|||..+++++|.++|..|| .|..+.++.+..+ |||||+|.+.++|+.||..|||..|+|+.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEe
Confidence 457999999999999999999999999 9999999988654 499999999999999999999999999954
No 310
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.55 E-value=1.9e-15 Score=112.45 Aligned_cols=113 Identities=11% Similarity=0.104 Sum_probs=62.4
Q ss_pred ceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHH
Q 022301 46 GYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDL 125 (299)
Q Consensus 46 g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l 125 (299)
++||.+|..++.+..++..+.... .|...--.. .............+|||.|||..+++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~-gg~~~g~~~-----------------g~~~~~~~~~~~~~lfV~nLp~~~te~dL 63 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMT-GGQQMGRGS-----------------GDSEFTVQSTTGHCVHMRGLPYKATENDI 63 (139)
T ss_dssp -------------------------------------------------------------CCCCEECCSCCTTCCHHHH
T ss_pred CcccccccCccccchhcccchhcc-CCCCCCCCC-----------------CCcccCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 578999998888877777544332 222110000 00011123345679999999999999999
Q ss_pred HHHHHhcCCeeEEEEEeCCC---CCEEEEEecChhhHHHHHHhcCCCeecCceeeE
Q 022301 126 KDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (299)
Q Consensus 126 ~~~f~~~G~v~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (299)
+++|.+|| |+.|.|+.++. .|||||+|.+.++|++|| .+|+..|+|+.+.+
T Consensus 64 ~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 64 YNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIEL 117 (139)
T ss_dssp HHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCC
T ss_pred HHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEE
Confidence 99999999 77899887754 469999999999999999 79999999995533
No 311
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.55 E-value=3.7e-14 Score=102.57 Aligned_cols=73 Identities=18% Similarity=0.203 Sum_probs=65.9
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC-CCEEEEEecChhhHHHHHHhcCCCeecCceee
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~-~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (299)
.....+|||+|||..+++++|.++|..||.|..+.++.+.. .|||||+|.+.++|..|+..|||..++|+.+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 78 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLV 78 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 34568999999999999999999999999999999987654 47999999999999999999999999999553
No 312
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.55 E-value=8.4e-15 Score=102.22 Aligned_cols=71 Identities=14% Similarity=0.157 Sum_probs=62.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
....+|||+|||..+++++|+++|.+||.|..+.++.+... +||||+|.+.++|++|++.|||..|.|+.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l 87 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence 34589999999999999999999999999987777776544 599999999999999999999999999844
No 313
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=2.3e-14 Score=102.03 Aligned_cols=71 Identities=11% Similarity=0.100 Sum_probs=62.6
Q ss_pred CCCccEEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCC--CeecCceee
Q 022301 105 RRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD--SEFRNAFSR 177 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g--~~~~g~~~~ 177 (299)
..+..+|||+|||.. +++++|.++|.+||.|..+.++.. .+||||+|.+.++|..|++.|++ ..|.|+.+.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM--KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT--TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC--CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456789999999998 999999999999999999999754 57999999999999999998864 568998553
No 314
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.7e-14 Score=103.50 Aligned_cols=71 Identities=20% Similarity=0.276 Sum_probs=64.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCceeeEE
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (299)
..++|||+|||..+++++|+++|.+||.|..|.+.. ..+||||+|.+.++|+.|+..|||..|.|+.+.+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 79 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLE 79 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 457999999999999999999999999999988874 45699999999999999999999999999966433
No 315
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=7.2e-14 Score=97.21 Aligned_cols=72 Identities=18% Similarity=0.225 Sum_probs=61.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCC-EEEEEecChhhHHHHHHhcCCCeecCceeeEEEEeccc
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~-~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~~~~ 185 (299)
...+|||+|||..+++++|.++|.+||.|..| +.+...+ ||||+|.+.++|+.|+. |+|..|+|+ .+.|...
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~----~l~V~~a 79 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGH----RLRVRPR 79 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTE----ECCCBCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCE----EEEEEEC
Confidence 44699999999999999999999999999987 4443333 99999999999999999 999999998 5555443
No 316
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.55 E-value=4.4e-14 Score=102.95 Aligned_cols=77 Identities=19% Similarity=0.240 Sum_probs=65.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCE-EEEEecChhhHHHHHHhcCCCeecCceeeEEEEecc
Q 022301 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTT-GIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~-~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~~~ 184 (299)
..-..|||+||++.+++++|.++|.+||+|..|.+.... .++ |||+|.+.++|+.|++.|||..|.|..+ .++++.
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~--~LrI~~ 102 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNACC--TLRIDF 102 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-TEEEEEEEESCHHHHHHHHHHHTTCEEETTEE--EEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHcCCCeecCCCc--EEEEEe
Confidence 345678899999999999999999999999999888755 455 9999999999999999999999998433 344444
Q ss_pred c
Q 022301 185 Y 185 (299)
Q Consensus 185 ~ 185 (299)
.
T Consensus 103 a 103 (130)
T 3zzy_A 103 S 103 (130)
T ss_dssp C
T ss_pred c
Confidence 3
No 317
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=8.3e-14 Score=96.29 Aligned_cols=78 Identities=17% Similarity=0.247 Sum_probs=67.1
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC---CCEEEEEecChhhHHHHHHhcCCCeecCceeeEEE
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~ 180 (299)
......+|||+|||..+++++|+++|..| .|..+.++.+.. .|||||+|.+.++|+.|+. |||..|+|+ .|
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr----~i 79 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGR----YI 79 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTE----EE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCc----EE
Confidence 34566899999999999999999999999 999999998843 2599999999999999999 999999999 45
Q ss_pred Eeccccc
Q 022301 181 RVREYDH 187 (299)
Q Consensus 181 ~~~~~~~ 187 (299)
.+.....
T Consensus 80 ~v~~a~~ 86 (91)
T 2dgw_A 80 EVFREKS 86 (91)
T ss_dssp EEEEESS
T ss_pred EEEECCc
Confidence 5544433
No 318
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.3e-14 Score=103.07 Aligned_cols=71 Identities=25% Similarity=0.360 Sum_probs=65.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
....+|||+|||..+++++|.++|.+||.|..+.++.+... |||||+|.+.++|+.|++.|||..|+|+.+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRAL 80 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCB
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 34579999999999999999999999999999999988643 599999999999999999999999999954
No 319
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.54 E-value=1.1e-14 Score=105.07 Aligned_cols=78 Identities=26% Similarity=0.345 Sum_probs=67.7
Q ss_pred CCCCeEEEcCCCC--CC---CHHHHHHHhhhcCCeeEEEeecC-------CCCCceEEEEecChHHHHHHHHhcCCCCCC
Q 022301 4 RASRTLYVGNLPG--DI---REREVEDLFYKYGPIAHIDLKIP-------PRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (299)
Q Consensus 4 ~~~~~l~V~nLp~--~~---t~~~l~~~F~~~G~v~~i~~~~~-------~~~~g~afV~F~~~e~A~~A~~~l~~~~~~ 71 (299)
.++++|+|.||-. ++ -+++|+++|++||+|..|.|..+ +.++|+|||+|.+.++|.+|+..|||.+|.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 4899999999932 22 36899999999999999999543 234699999999999999999999999999
Q ss_pred CceEEEEEcc
Q 022301 72 GHRLRVELAH 81 (299)
Q Consensus 72 g~~i~v~~~~ 81 (299)
|+.|.|.++.
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999975
No 320
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.1e-14 Score=101.42 Aligned_cols=65 Identities=18% Similarity=0.198 Sum_probs=58.5
Q ss_pred CCCccEEEE--eCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCee
Q 022301 105 RRSEYRVLV--TGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171 (299)
Q Consensus 105 ~~~~~~l~v--~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~ 171 (299)
..+..+||| +||+..+++++|+++|.+||.|..+.++. ..|||||+|.+.++|++|++.|||.+|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 345678999 66999999999999999999999988764 357999999999999999999999988
No 321
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.54 E-value=4.5e-14 Score=103.60 Aligned_cols=75 Identities=17% Similarity=0.314 Sum_probs=65.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCceeeEEEEe
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~ 182 (299)
...+|||+|||..+++++|.++|.+||.|..+.++.++. .|||||+|.+.++|+.|+ .|||..|+|+ .+.|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~----~l~V 109 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGR----TIKV 109 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTE----ECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCe----EEEE
Confidence 457999999999999999999999999999999988753 359999999999999999 7999999998 4444
Q ss_pred cccc
Q 022301 183 REYD 186 (299)
Q Consensus 183 ~~~~ 186 (299)
....
T Consensus 110 ~~a~ 113 (124)
T 2jwn_A 110 LPKR 113 (124)
T ss_dssp EESS
T ss_pred EECC
Confidence 4443
No 322
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=3.7e-14 Score=95.89 Aligned_cols=71 Identities=18% Similarity=0.275 Sum_probs=59.8
Q ss_pred ccEEEEeCCCCCCCHHH----HHHHHHhcC-CeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCceeeEEEEe
Q 022301 108 EYRVLVTGLPSSASWQD----LKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (299)
Q Consensus 108 ~~~l~v~nl~~~~~~~~----l~~~f~~~G-~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~ 182 (299)
.+.|||.|||..+++++ |.++|.+|| +|..| .+|+|||.|.+.++|..|++.|+|..+.|+ .|.+
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tgG~AfV~F~~~esA~~A~~~l~G~~l~gr----~i~v 78 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TGCSAILRFINQDSAERAQKRMENEDVFGN----RIIV 78 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CTTCEEEEESSHHHHHHHHHHHTTCCSSSS----CCEE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ecCEEEEEECCHHHHHHHHHHhcCCccCCc----eEEE
Confidence 34499999999999887 558999995 99988 238999999999999999999999999999 5555
Q ss_pred cccccC
Q 022301 183 REYDHR 188 (299)
Q Consensus 183 ~~~~~~ 188 (299)
..+...
T Consensus 79 ~~A~~~ 84 (96)
T 2diu_A 79 SFTPKN 84 (96)
T ss_dssp ESSCCS
T ss_pred EecCCC
Confidence 554443
No 323
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.6e-14 Score=100.14 Aligned_cols=75 Identities=15% Similarity=0.233 Sum_probs=64.3
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC---CEEEEEecChhhHHHHHHhcCCCeecCceeeEE
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (299)
.......+|||.|||+.+++++|+++|..||. +.|.++.++.+ |||||+|.+.++|++||+ +|+..|+|+.+.+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34456689999999999999999999999994 48999888642 499999999999999995 79999999955443
No 324
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.54 E-value=2.4e-14 Score=106.01 Aligned_cols=72 Identities=7% Similarity=0.135 Sum_probs=64.6
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeE--EEEEeCCC----CCEEEEEecChhhHHHHHHhcCCC----eecC
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--SQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDS----EFRN 173 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~----~~~g 173 (299)
......+|||+|||..+++++|.++|.+||.|.. |.|+.++. .|||||+|.+. +|..|+..|||. .|+|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456789999999999999999999999999966 89988873 36999999999 999999999999 9999
Q ss_pred cee
Q 022301 174 AFS 176 (299)
Q Consensus 174 ~~~ 176 (299)
+.+
T Consensus 98 r~l 100 (131)
T 2m2b_A 98 KTI 100 (131)
T ss_dssp CCC
T ss_pred EEE
Confidence 954
No 325
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.54 E-value=1.4e-14 Score=101.44 Aligned_cols=73 Identities=15% Similarity=0.196 Sum_probs=63.6
Q ss_pred CCCCccEEEEeCCCCCCCHHHHH----HHHHhcCCeeEEEEEeC-CCCCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRD-GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~----~~f~~~G~v~~~~~~~~-~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
...+..+|||+|||..+++++|. ++|.+||.|..+.+... ...|||||+|.+.++|..|+..|||..++|+.+
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 34567899999999999999999 99999999999988743 234699999999999999999999999999844
No 326
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.54 E-value=1.8e-15 Score=107.05 Aligned_cols=69 Identities=23% Similarity=0.446 Sum_probs=58.1
Q ss_pred cCCCCCCCHHHHHHHh------------hhcCCeeEEEeecC--CCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEE
Q 022301 12 GNLPGDIREREVEDLF------------YKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (299)
Q Consensus 12 ~nLp~~~t~~~l~~~F------------~~~G~v~~i~~~~~--~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v 77 (299)
.|||.++++++|+++| ++||+|..|.|..+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v 100 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 100 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCE
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEE
Confidence 3444445666666555 99999999999653 567899999999999999999999999999999999
Q ss_pred EEc
Q 022301 78 ELA 80 (299)
Q Consensus 78 ~~~ 80 (299)
.|+
T Consensus 101 ~~s 103 (104)
T 1jmt_A 101 ELS 103 (104)
T ss_dssp EEC
T ss_pred EEc
Confidence 986
No 327
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.54 E-value=3.6e-14 Score=101.67 Aligned_cols=78 Identities=18% Similarity=0.216 Sum_probs=67.0
Q ss_pred CCCCCeEEEcCCCC--CC--------CHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCC
Q 022301 3 SRASRTLYVGNLPG--DI--------REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (299)
Q Consensus 3 ~~~~~~l~V~nLp~--~~--------t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g 72 (299)
..++++|.|.|+-. .. -+++|+++|++||.|.+|.|..+ ..+|+|||+|.+.++|.+|+..|||.+|.|
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~-~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN-SAQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT-CTTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC-CCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46789999999933 21 14578999999999999999654 358999999999999999999999999999
Q ss_pred ceEEEEEcc
Q 022301 73 HRLRVELAH 81 (299)
Q Consensus 73 ~~i~v~~~~ 81 (299)
+.|.|.++.
T Consensus 83 R~i~v~~~~ 91 (114)
T 3s6e_A 83 KMITAAYVP 91 (114)
T ss_dssp EECEEEEEC
T ss_pred EEEEEEEEc
Confidence 999999974
No 328
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.54 E-value=1.7e-14 Score=100.85 Aligned_cols=79 Identities=13% Similarity=0.163 Sum_probs=65.9
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCceeeEEEEec
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~~ 183 (299)
......+|||+|||..+++++|+++|..||.|..+ .......|||||+|.+.++|+.|+..|+|..|+|+ .+.+.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR----SVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTE----EEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe----EEEEE
Confidence 34467899999999999999999999999998877 33333456999999999999999999999999998 55555
Q ss_pred cccc
Q 022301 184 EYDH 187 (299)
Q Consensus 184 ~~~~ 187 (299)
....
T Consensus 87 ~a~~ 90 (96)
T 1fjc_A 87 YTGE 90 (96)
T ss_dssp ECSS
T ss_pred EcCC
Confidence 5443
No 329
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.7e-14 Score=100.08 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=65.3
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeE-EEEEeCC---CCCEEEEEecChhhHHHHHHhcCCCeecCceeeE
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (299)
+......+|||+|||..+++++|+++|..||.|.. +.++.+. ..|||||+|.+.++|+.|+.. ++..|+|+.+.+
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 34456789999999999999999999999999987 7777663 346999999999999999998 999999996544
Q ss_pred E
Q 022301 179 Y 179 (299)
Q Consensus 179 ~ 179 (299)
.
T Consensus 89 ~ 89 (104)
T 1wg5_A 89 F 89 (104)
T ss_dssp E
T ss_pred E
Confidence 3
No 330
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.53 E-value=2e-14 Score=106.50 Aligned_cols=73 Identities=21% Similarity=0.282 Sum_probs=65.4
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCC---eeEEEEEeCCCC---CEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~---v~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
+.....++|||+|||+.+++++|.++|..||. |..|.++.+..+ |||||+|.+.++|++|++ |||..|+|+.+
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 34456789999999999999999999999999 888999888653 599999999999999999 99999999944
No 331
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.53 E-value=9e-14 Score=104.21 Aligned_cols=74 Identities=20% Similarity=0.176 Sum_probs=66.9
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
.......+|||+|||..+++++|+++|.+||.|..+.++.++. .|||||+|.+.++|+.|++.|||..|+|+.+
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 4455678999999999999999999999999999999988743 4699999999999999999999999999844
No 332
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.7e-14 Score=101.04 Aligned_cols=71 Identities=21% Similarity=0.302 Sum_probs=63.2
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC---CCEEEEEecChhhHHHHHHhcCCCeecCceee
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (299)
.....+|||+|||..+++++|+++|..| .|..|.|+.+.. .|||||+|.+.++|++|| .+||..|+|+.+.
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~ 86 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVE 86 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEE
Confidence 3456799999999999999999999999 899999987754 469999999999999999 6999999999443
No 333
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.52 E-value=4.7e-14 Score=100.23 Aligned_cols=71 Identities=10% Similarity=0.113 Sum_probs=62.8
Q ss_pred CCccEEEEeCCCCCC------CHHHHHHHHHhcCCeeEEEEEeC--CCCCEEEEEecChhhHHHHHHhcCCCeecCc-ee
Q 022301 106 RSEYRVLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRD--GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA-FS 176 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~------~~~~l~~~f~~~G~v~~~~~~~~--~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~-~~ 176 (299)
...++|||+|||..+ ++++|.++|.+||.|..+.++.. ...|||||+|.+.++|+.|+..|||..|+|+ .+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 346799999999999 78999999999999999988732 2347999999999999999999999999996 55
No 334
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.52 E-value=1.5e-13 Score=106.99 Aligned_cols=79 Identities=18% Similarity=0.117 Sum_probs=69.6
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCC---CCCEEEEEecChhhHHHHHHhcCCCeecCceeeEE
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (299)
......++|||+|||..+++++|+++|.+||.|..|.+..+. ..|||||+|.+.++|+.|++.|||..|+|+.+.+.
T Consensus 83 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 83 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SSCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 344567899999999999999999999999999999998875 33699999999999999999999999999976544
Q ss_pred EE
Q 022301 180 VR 181 (299)
Q Consensus 180 ~~ 181 (299)
+.
T Consensus 163 ~a 164 (177)
T 2f3j_A 163 LV 164 (177)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 335
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.52 E-value=7.5e-15 Score=103.46 Aligned_cols=72 Identities=15% Similarity=0.336 Sum_probs=61.5
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCC-----CCCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~-----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
......++|||+|||..+++++|.++|..|| |..+.++.+. ..|||||+|.+.++|..|+ .|+|..|+|+.+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 3445678999999999999999999999999 9999998876 2469999999999999999 899999999854
No 336
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.51 E-value=7.3e-14 Score=99.90 Aligned_cols=78 Identities=15% Similarity=0.227 Sum_probs=64.7
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCceeeEEE
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~ 180 (299)
.....+|||+|||..+++++|.++|..||.|..+.++.+.. .|||||+|.+.++|..|+..+ |..|+|+ .+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~----~l 96 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSK----TI 96 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTE----EE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCE----EE
Confidence 34568999999999999999999999999999999998764 369999999999999999986 5999998 45
Q ss_pred Eeccccc
Q 022301 181 RVREYDH 187 (299)
Q Consensus 181 ~~~~~~~ 187 (299)
.+.....
T Consensus 97 ~V~~a~~ 103 (109)
T 2rs2_A 97 DPKVAFP 103 (109)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 5544433
No 337
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.51 E-value=3.4e-14 Score=118.00 Aligned_cols=80 Identities=23% Similarity=0.262 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCC-CCCC---CceEEE
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDG-YDFD---GHRLRV 77 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~--~~~~~g~afV~F~~~e~A~~A~~~l~~-~~~~---g~~i~v 77 (299)
.+.++|||+|||..+|+++|.++|+.||.|..|.|.. ++.++|||||+|.+.++|..|+..||+ ..+. +++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4678999999999999999999999999999999954 466789999999999999999999954 4444 999999
Q ss_pred EEccCC
Q 022301 78 ELAHGG 83 (299)
Q Consensus 78 ~~~~~~ 83 (299)
.++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998754
No 338
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.51 E-value=3.5e-14 Score=94.40 Aligned_cols=66 Identities=20% Similarity=0.311 Sum_probs=60.7
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 110 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
+|||+|||..+++++|.++|.+||.|..+.++.++. .|||||+|.+.++|+.|++ |+|..++|+.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l 70 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMV 70 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEE
Confidence 489999999999999999999999999999988764 3699999999999999998 99999999854
No 339
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.9e-14 Score=101.71 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=64.9
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEEeCC---CCCEEEEEecChhhHHHHHHhcCCCeecCceeeEE
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDV-CFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v-~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (299)
.....+|||+|||..+++++|.++|..||.| ..|.|+.+. ..|||||+|.+.++|+.||.. ||..|+|+.+.+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3456899999999999999999999999999 888888776 336999999999999999997 9999999955433
No 340
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=3e-14 Score=95.25 Aligned_cols=68 Identities=16% Similarity=0.277 Sum_probs=62.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCceee
Q 022301 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (299)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (299)
++|||+|||..+++++|+++|.+||.|..+.+..++. .|||||+|.+.++|+.|+..++ ..++|+.+.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~ 72 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTID 72 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEE
Confidence 3799999999999999999999999999999988764 4699999999999999999999 999998553
No 341
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.8e-13 Score=97.99 Aligned_cols=71 Identities=14% Similarity=0.246 Sum_probs=62.8
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEE-eCC----CCCEEEEEecChhhHHHHHHhcC--CCeecCcee
Q 022301 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVF-RDG----SGTTGIVDYTNYDDMKHAIKKLD--DSEFRNAFS 176 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~~~~~-~~~----~~~~~fv~f~~~~~a~~a~~~l~--g~~~~g~~~ 176 (299)
...++|||+|||..+++++|.++|.+||. |..+.++ .+. ..|||||+|.+.++|..|+..|+ +..++|+.+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 35689999999999999999999999998 9999887 443 34699999999999999999996 589999844
No 342
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.50 E-value=1.1e-13 Score=94.78 Aligned_cols=68 Identities=19% Similarity=0.303 Sum_probs=61.9
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhc----C-------CeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCc
Q 022301 106 RSEYRVLVTGLPSSASWQDLKDHMRRA----G-------DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~----G-------~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (299)
....+|||+|||..+++++|+++|.+| | .|..+.+..+ .|||||+|.+.++|+.|+ .|||..++|+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~g~ 80 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQGQ 80 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEECCe
Confidence 356899999999999999999999999 8 8998888765 579999999999999999 9999999998
Q ss_pred ee
Q 022301 175 FS 176 (299)
Q Consensus 175 ~~ 176 (299)
.+
T Consensus 81 ~l 82 (87)
T 2hzc_A 81 SL 82 (87)
T ss_dssp EC
T ss_pred EE
Confidence 44
No 343
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=7.1e-14 Score=102.49 Aligned_cols=76 Identities=22% Similarity=0.272 Sum_probs=63.6
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCceeeEE
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (299)
+....++|||+|||..+++++|.++|..||.|..+.++.+.. .|||||+|.+.++|+.||. |||..|+|+.+.+.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 345668999999999999999999999999998744443332 3599999999999999999 99999999966544
Q ss_pred E
Q 022301 180 V 180 (299)
Q Consensus 180 ~ 180 (299)
.
T Consensus 100 ~ 100 (124)
T 1wel_A 100 P 100 (124)
T ss_dssp E
T ss_pred E
Confidence 3
No 344
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.50 E-value=1.2e-13 Score=100.22 Aligned_cols=77 Identities=22% Similarity=0.315 Sum_probs=67.0
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCC---eeEEEEEeCCCC---CEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~---v~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
+.....++|||+|||..+++++|+++|..||. |..|.++.+..+ |||||+|.+.++|++||+ |||..|+|+.+
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 33456789999999999999999999999999 889999887653 599999999999999999 99999999955
Q ss_pred eEEE
Q 022301 177 RAYV 180 (299)
Q Consensus 177 ~~~~ 180 (299)
.+..
T Consensus 91 ~V~~ 94 (118)
T 2db1_A 91 EVFK 94 (118)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4433
No 345
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=2.2e-13 Score=96.23 Aligned_cols=79 Identities=19% Similarity=0.300 Sum_probs=64.2
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCceeeE
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (299)
.......+|||+|||..+++++|+++|..|+ .+.++.+... +||||+|.+.++|+.|++.|||..|.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---- 82 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN---- 82 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE----
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCe----
Confidence 3445678999999999999999999999874 4556655433 5999999999999999999999999998
Q ss_pred EEEecccccC
Q 022301 179 YVRVREYDHR 188 (299)
Q Consensus 179 ~~~~~~~~~~ 188 (299)
.+.|....++
T Consensus 83 ~l~V~~a~~~ 92 (102)
T 2fc8_A 83 KVTLDWAKPK 92 (102)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEEecCC
Confidence 5555555444
No 346
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.49 E-value=1.2e-13 Score=112.09 Aligned_cols=73 Identities=14% Similarity=0.163 Sum_probs=65.3
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEEeCCCC----CEEEEEecChhhHHHHHHhcCCCeecCceeeEE
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (299)
..++|||+||+..+++++|+++|.+|| .|..|.|+.++.+ |||||+|.+.++|++||+.|||..|.|+.+.+.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 457899999999999999999999999 9999999998654 499999999999999999999999999965433
No 347
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.49 E-value=1.2e-13 Score=94.84 Aligned_cols=67 Identities=10% Similarity=0.117 Sum_probs=54.7
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeec--Cc
Q 022301 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR--NA 174 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~--g~ 174 (299)
....+.++|||+|||..+++++|+++|++||.|..+.++.+ ..|||||+|.+.++|++ ++|..+. |.
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~----~~~~~~~~~g~ 74 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQS----LCGEDLIIKGI 74 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHH----HTTCEEEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHH----HcCCCcccCCE
Confidence 34556789999999999999999999999999999999876 56899999999999983 5666655 55
No 348
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.48 E-value=1.3e-13 Score=97.27 Aligned_cols=77 Identities=14% Similarity=0.199 Sum_probs=62.8
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCeeE---EEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCceeeEEEEe
Q 022301 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF---SQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~---~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~~~ 182 (299)
....+|||+|||..+++++|+++|..||.|.. .........|||||+|.+.++|+.|++ |||..|.|+ .+.|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~----~l~V 89 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGN----EIKL 89 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTB----CCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCc----EEEE
Confidence 35689999999999999999999999998765 111223456799999999999999999 999999998 4555
Q ss_pred ccccc
Q 022301 183 REYDH 187 (299)
Q Consensus 183 ~~~~~ 187 (299)
.....
T Consensus 90 ~~a~~ 94 (101)
T 1fj7_A 90 EKPKG 94 (101)
T ss_dssp ECCSC
T ss_pred EEcCC
Confidence 44443
No 349
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.48 E-value=5.6e-14 Score=96.48 Aligned_cols=67 Identities=22% Similarity=0.325 Sum_probs=61.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
...+|||+|||..+++++|+++|.+| .|..+.+. ...|||||+|.+.++|+.|++.|||..++|+.+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 70 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDL 70 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence 35789999999999999999999999 99998885 556799999999999999999999999999944
No 350
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3.9e-13 Score=96.98 Aligned_cols=70 Identities=19% Similarity=0.373 Sum_probs=63.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC---CEEEEEecChhhHHHHHHhcCCCeecCc
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (299)
.....+|||+|||..+++++|.++|..||.|..+.++.+..+ +||||+|.+.++|+.|+..|||..|.+.
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~ 94 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTP 94 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCC
Confidence 345689999999999999999999999999999999988632 5999999999999999999999999654
No 351
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.47 E-value=6e-14 Score=96.79 Aligned_cols=70 Identities=24% Similarity=0.319 Sum_probs=63.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCceeeEE
Q 022301 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (299)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (299)
.+|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.+ |..|+..|||..++|+.+.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~ 75 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVT 75 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEE
Confidence 5799999999999999999999999999999988754 469999999999 999999999999999965433
No 352
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.47 E-value=7.2e-14 Score=99.65 Aligned_cols=74 Identities=9% Similarity=0.161 Sum_probs=65.3
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCC---eeEEEEEeCCC---CCEEEEEecChhhHHHHHHhcCCCeecCceee
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~---v~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (299)
.....++|||+|||+.+++++|.++|..||. |..+.++.+.. .|||||+|.+.++|+.|+. +||..|+|+.+.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 3446689999999999999999999999998 88899987754 4699999999999999999 999999999554
Q ss_pred E
Q 022301 178 A 178 (299)
Q Consensus 178 ~ 178 (299)
+
T Consensus 86 V 86 (107)
T 2lmi_A 86 V 86 (107)
T ss_dssp C
T ss_pred E
Confidence 3
No 353
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.46 E-value=2.4e-13 Score=102.24 Aligned_cols=71 Identities=15% Similarity=0.136 Sum_probs=61.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEE-eCCCCCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVF-RDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--------~~~~-~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
.+..+|||+|||..+++++|.++|..||.|.. +.+. .....|||||+|.+.++|..|+..|||..|.|+.+
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 45689999999999999999999999998865 3333 33455799999999999999999999999999844
No 354
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.45 E-value=1.4e-13 Score=91.51 Aligned_cols=67 Identities=12% Similarity=0.201 Sum_probs=60.4
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecCceee
Q 022301 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (299)
Q Consensus 110 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (299)
+|||+|||..+++++|.++|.+||.|..+.+..++. .|||||+|.+.++|+.|++. ++..++|+.+.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~ 71 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCE 71 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 589999999999999999999999999999987754 46999999999999999995 88999998553
No 355
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.44 E-value=3.6e-13 Score=98.02 Aligned_cols=68 Identities=13% Similarity=0.171 Sum_probs=61.3
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
.....+|||+|| .+++++|.++|.+||.|..|.+. ...|||||+|.+.++|+.|++.|||..|+|+.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l 103 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQL 103 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 346789999996 69999999999999999999886 456799999999999999999999999999854
No 356
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.44 E-value=5.5e-13 Score=94.17 Aligned_cols=71 Identities=18% Similarity=0.315 Sum_probs=63.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC---CEEEEEecChhhHHHHHHhcCCCeecCceee
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (299)
.....+|||+|||..+++++|.++|..||.|..+.++.+..+ |||||+|.+.++|+.|+. +|..++|..+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~ 79 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLK 79 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEE
Confidence 345689999999999999999999999999999999998732 599999999999999999 88888887553
No 357
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.7e-13 Score=94.02 Aligned_cols=73 Identities=11% Similarity=0.158 Sum_probs=59.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCee--cCceeeEEEEecc
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF--RNAFSRAYVRVRE 184 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~--~g~~~~~~~~~~~ 184 (299)
...+|||+|||..+++++|.++|.+||.|..+.++.+ ..|||||+|.+.++|++| ++..+ .|. .+.+..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~----~~~~~~~~g~----~l~v~~ 74 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSL----CGEDLIIKGI----SVHISN 74 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHT----TTCEEEETTE----EEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHH----hcCCceeCCE----EEEEEe
Confidence 4579999999999999999999999999999999876 567999999999999754 44444 565 555555
Q ss_pred cccC
Q 022301 185 YDHR 188 (299)
Q Consensus 185 ~~~~ 188 (299)
..++
T Consensus 75 a~~~ 78 (88)
T 1wf0_A 75 AEPK 78 (88)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 5444
No 358
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.44 E-value=3.8e-13 Score=98.08 Aligned_cols=75 Identities=11% Similarity=0.187 Sum_probs=63.5
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCee--EEEEEeCCC---CCEEEEEecChhhHHHHHHhcCCCeecCceeeE
Q 022301 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVC--FSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (299)
Q Consensus 104 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~--~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (299)
......+|||+|||+.+++++|+++|..| .|. .|.|+.++. .|||||+|.+.++|++|++. ++..|+|+.+.+
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 34456889999999999999999999999 676 888887754 46999999999999999995 779999996544
Q ss_pred EE
Q 022301 179 YV 180 (299)
Q Consensus 179 ~~ 180 (299)
..
T Consensus 116 ~~ 117 (126)
T 2hgm_A 116 FK 117 (126)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 359
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=3.3e-13 Score=98.16 Aligned_cols=74 Identities=12% Similarity=0.162 Sum_probs=63.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCe----eEEEEEeCCCC---CEEEEEecChhhHHHHHHhcCCCeecCceeeE
Q 022301 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v----~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (299)
....+|||+|||+.+++++|+++|.+||.| ..|.|+.+..+ |||||+|.+.++|++||+. |+..|+|+.+.+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 456899999999999999999999999975 57888877533 5999999999999999996 999999995544
Q ss_pred EE
Q 022301 179 YV 180 (299)
Q Consensus 179 ~~ 180 (299)
..
T Consensus 100 ~~ 101 (123)
T 2dha_A 100 FR 101 (123)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 360
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.13 E-value=1.6e-14 Score=104.63 Aligned_cols=79 Identities=19% Similarity=0.308 Sum_probs=67.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEeCCC----CCEEEEEecChhhHHHHHHhcCCCeecC
Q 022301 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--------~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g 173 (299)
.+..+|||+|||..+++++|+++|.+||.|.. +.++.++. .|||||+|.+.++|+.|+..|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35579999999999999999999999999988 78877743 4699999999999999999999999999
Q ss_pred ceeeEEEEecccccC
Q 022301 174 AFSRAYVRVREYDHR 188 (299)
Q Consensus 174 ~~~~~~~~~~~~~~~ 188 (299)
+ .+.|.....+
T Consensus 85 ~----~l~V~~a~~~ 95 (116)
T 2lcw_A 85 N----PIKVSFATRR 95 (116)
Confidence 8 5555544443
No 361
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1.3e-12 Score=93.54 Aligned_cols=69 Identities=12% Similarity=0.209 Sum_probs=61.3
Q ss_pred cEEEEeCC----CCCCCHHHHHHHHHhcCCeeEEEEEeCCCCC----EEEEEecC----hhh----HHHHHH--hcCCCe
Q 022301 109 YRVLVTGL----PSSASWQDLKDHMRRAGDVCFSQVFRDGSGT----TGIVDYTN----YDD----MKHAIK--KLDDSE 170 (299)
Q Consensus 109 ~~l~v~nl----~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~----~~fv~f~~----~~~----a~~a~~--~l~g~~ 170 (299)
..|||+|| |+.+++++|+++|..||+|..+.++.|+.+| ||||+|.+ +++ |..|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999885 99999996 433 889988 799999
Q ss_pred ecCceee
Q 022301 171 FRNAFSR 177 (299)
Q Consensus 171 ~~g~~~~ 177 (299)
|+|+.+.
T Consensus 83 I~Gr~ir 89 (136)
T 2j8a_A 83 IMGFKFE 89 (136)
T ss_dssp ETTEEEE
T ss_pred ecCcEEE
Confidence 9999543
No 362
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=4.2e-12 Score=91.16 Aligned_cols=72 Identities=17% Similarity=0.227 Sum_probs=61.1
Q ss_pred CCCccEEEEeCCCCCCC-----------HHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecC
Q 022301 105 RRSEYRVLVTGLPSSAS-----------WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~-----------~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g 173 (299)
..+..+|+|.||..... +++|.++|.+||.|..+.|......|||||+|.+.++|+.|+..|||..|+|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34568999999954432 5899999999999999977544556899999999999999999999999999
Q ss_pred cee
Q 022301 174 AFS 176 (299)
Q Consensus 174 ~~~ 176 (299)
+.+
T Consensus 92 r~l 94 (112)
T 2dit_A 92 RQI 94 (112)
T ss_dssp EEC
T ss_pred cEE
Confidence 944
No 363
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=5.4e-13 Score=96.22 Aligned_cols=60 Identities=15% Similarity=0.250 Sum_probs=53.4
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCC-------CCCEEEEEecChhhHHHHHHhc
Q 022301 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-------SGTTGIVDYTNYDDMKHAIKKL 166 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~-------~~~~~fv~f~~~~~a~~a~~~l 166 (299)
....+|||+|||..+++++|+++|.+||.|. +.++.+. ..|||||+|.+.++|+.|++.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 3457999999999999999999999999999 7776653 3479999999999999999998
No 364
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.38 E-value=3.6e-12 Score=90.08 Aligned_cols=74 Identities=14% Similarity=0.170 Sum_probs=62.4
Q ss_pred CCccEEEEeCCCC-----CCCHHHHHHHHHhcCCeeEEEEEeCC-----CCCEEEEEecChhhHHHHHHhcCCCeecCce
Q 022301 106 RSEYRVLVTGLPS-----SASWQDLKDHMRRAGDVCFSQVFRDG-----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (299)
Q Consensus 106 ~~~~~l~v~nl~~-----~~~~~~l~~~f~~~G~v~~~~~~~~~-----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (299)
.+..+|+|.|+.. +.++++|+++|++||.|..+.|+.++ ..|||||+|.+.++|.+|++.|||..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3457899999863 23789999999999999999999864 2479999999999999999999999999996
Q ss_pred eeEE
Q 022301 176 SRAY 179 (299)
Q Consensus 176 ~~~~ 179 (299)
+.+.
T Consensus 86 i~v~ 89 (105)
T 2pe8_A 86 VKAC 89 (105)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 5443
No 365
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=3.9e-12 Score=91.09 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=65.9
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecC-hHHHHHHHHhcC--CCCCCCceEEEEE
Q 022301 4 RASRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEE-ARDAEDAIRGRD--GYDFDGHRLRVEL 79 (299)
Q Consensus 4 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~-~e~A~~A~~~l~--~~~~~g~~i~v~~ 79 (299)
.+.+.|||+||+.. ++.++|+++|+.||+|..|.|..+. ..|||.|.+ +++|..|+..|| +..|.|..+++..
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~---~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA---KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC---SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC---CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 46899999999999 9999999999999999999997543 379999999 899999999995 6888999888876
Q ss_pred c
Q 022301 80 A 80 (299)
Q Consensus 80 ~ 80 (299)
.
T Consensus 93 L 93 (121)
T 1owx_A 93 L 93 (121)
T ss_dssp C
T ss_pred C
Confidence 5
No 366
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.35 E-value=7.4e-12 Score=98.75 Aligned_cols=71 Identities=17% Similarity=0.272 Sum_probs=62.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC---CEEEEEecChhhHHHHHHhcCCCeecCceeeE
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (299)
...+|||+|||..+++++|.++|.+||.|..|.+..+..+ |||||+|.+.++|+.|+..++ ..++|+.+.+
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V 181 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLI 181 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEE
Confidence 3579999999999999999999999999999999987543 699999999999999998665 5899996543
No 367
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.29 E-value=6.1e-12 Score=101.56 Aligned_cols=65 Identities=14% Similarity=0.248 Sum_probs=60.1
Q ss_pred CCCccEEEEeCCCCCC---------CHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCee
Q 022301 105 RRSEYRVLVTGLPSSA---------SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~---------~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~ 171 (299)
.....+|||+||+..+ ++++|.++|.+||.|..|.|+.. .|||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~--kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES--KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC--CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4467899999999998 79999999999999999999865 46999999999999999999999999
No 368
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.27 E-value=1.4e-11 Score=104.81 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=59.5
Q ss_pred CCCCccEEEEeC--CCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeec
Q 022301 104 SRRSEYRVLVTG--LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (299)
Q Consensus 104 ~~~~~~~l~v~n--l~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~ 172 (299)
...+..+|||+| |+..+++++|+++|.+||+|..|.+.. ..|||||+|.+.++|++|++.|||.++.
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 345678999999 578899999999999999999887754 5579999999999999999999999984
No 369
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.26 E-value=2.1e-11 Score=86.20 Aligned_cols=74 Identities=18% Similarity=0.188 Sum_probs=61.3
Q ss_pred CccEEEEeCC--CCCCC--------HHHHHHHHHhcCCeeEEEEEeCC------CCCEEEEEecChhhHHHHHHhcCCCe
Q 022301 107 SEYRVLVTGL--PSSAS--------WQDLKDHMRRAGDVCFSQVFRDG------SGTTGIVDYTNYDDMKHAIKKLDDSE 170 (299)
Q Consensus 107 ~~~~l~v~nl--~~~~~--------~~~l~~~f~~~G~v~~~~~~~~~------~~~~~fv~f~~~~~a~~a~~~l~g~~ 170 (299)
+...|.|.|+ |..+. +++|+++|++||.|..+.|+.+. ..|+|||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4568889997 32332 47999999999999999998775 34799999999999999999999999
Q ss_pred ecCceeeEEE
Q 022301 171 FRNAFSRAYV 180 (299)
Q Consensus 171 ~~g~~~~~~~ 180 (299)
++|+.+.+..
T Consensus 84 f~GR~i~v~~ 93 (105)
T 3v4m_A 84 FANRVVVTKY 93 (105)
T ss_dssp ETTEECEEEE
T ss_pred eCCCEEEEEE
Confidence 9999665443
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.25 E-value=4e-11 Score=85.75 Aligned_cols=76 Identities=12% Similarity=0.069 Sum_probs=63.0
Q ss_pred CCccEEEEeCCCCCC----------CHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCce
Q 022301 106 RSEYRVLVTGLPSSA----------SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (299)
Q Consensus 106 ~~~~~l~v~nl~~~~----------~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (299)
.+...|.|.|+-... -+++|.++|++||.|..+.+..+...|+|||+|.+.++|.+|+..|||..++|+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 345678888863321 2568899999999999999988877789999999999999999999999999997
Q ss_pred eeEEEE
Q 022301 176 SRAYVR 181 (299)
Q Consensus 176 ~~~~~~ 181 (299)
+.+...
T Consensus 85 i~v~~~ 90 (114)
T 3s6e_A 85 ITAAYV 90 (114)
T ss_dssp CEEEEE
T ss_pred EEEEEE
Confidence 655443
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.23 E-value=3.6e-11 Score=86.59 Aligned_cols=74 Identities=14% Similarity=0.192 Sum_probs=62.0
Q ss_pred CccEEEEeCCCC--CC---CHHHHHHHHHhcCCeeEEEEEeCCCC--------CEEEEEecChhhHHHHHHhcCCCeecC
Q 022301 107 SEYRVLVTGLPS--SA---SWQDLKDHMRRAGDVCFSQVFRDGSG--------TTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (299)
Q Consensus 107 ~~~~l~v~nl~~--~~---~~~~l~~~f~~~G~v~~~~~~~~~~~--------~~~fv~f~~~~~a~~a~~~l~g~~~~g 173 (299)
+..+|+|.|+-. ++ -+++|++.|.+||+|..|.|+.+..+ |++||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 457889999732 22 37899999999999999999987542 699999999999999999999999999
Q ss_pred ceeeEEE
Q 022301 174 AFSRAYV 180 (299)
Q Consensus 174 ~~~~~~~ 180 (299)
+.+.+..
T Consensus 99 R~i~v~~ 105 (118)
T 3ue2_A 99 RKVVAEV 105 (118)
T ss_dssp EECEEEE
T ss_pred cEEEEEE
Confidence 9665444
No 372
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=3.6e-11 Score=80.55 Aligned_cols=74 Identities=16% Similarity=0.261 Sum_probs=61.7
Q ss_pred CCCCeEEEcCCC----CCCCH----HHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceE
Q 022301 4 RASRTLYVGNLP----GDIRE----REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRL 75 (299)
Q Consensus 4 ~~~~~l~V~nLp----~~~t~----~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i 75 (299)
-|.-||+|.-++ .+.-+ .+|.+.|.+||+|..++|.. +.+||+|.+.++|.+|+. |||..+.|+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~-----d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~L 78 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE-----DKMWVTFLEGSSALNVLS-LNGKELLNRTI 78 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS-----SSEEEEESSHHHHHHGGG-GTTCEETTEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec-----CCEEEEECChHHHHHHHh-cCCeEeCCeEE
Confidence 466788886665 23333 56999999999999999974 348999999999999999 99999999999
Q ss_pred EEEEccCC
Q 022301 76 RVELAHGG 83 (299)
Q Consensus 76 ~v~~~~~~ 83 (299)
+|+++.+.
T Consensus 79 kV~lkt~d 86 (91)
T 2dnr_A 79 TIALKSPS 86 (91)
T ss_dssp EEEECCCS
T ss_pred EEEeCCCC
Confidence 99998654
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=9e-11 Score=84.00 Aligned_cols=75 Identities=13% Similarity=0.180 Sum_probs=65.7
Q ss_pred CCCCCccEEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecC-hhhHHHHHHhc--CCCeecCceeeE
Q 022301 103 VSRRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTN-YDDMKHAIKKL--DDSEFRNAFSRA 178 (299)
Q Consensus 103 ~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~-~~~a~~a~~~l--~g~~~~g~~~~~ 178 (299)
....++..|+|.||+.. ++.++|+++|++||+|.+|.+..+.. .|||.|.+ ..+|.+|+..| +|..|.|..+..
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ 90 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW 90 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEE
Confidence 45567899999999999 99999999999999999999988876 79999999 79999999999 477888875543
Q ss_pred E
Q 022301 179 Y 179 (299)
Q Consensus 179 ~ 179 (299)
.
T Consensus 91 e 91 (121)
T 1owx_A 91 E 91 (121)
T ss_dssp E
T ss_pred E
Confidence 3
No 374
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.15 E-value=1.6e-11 Score=86.68 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=54.4
Q ss_pred EeCCCCCCCHHHHHHHH------------HhcCCeeEEEEEeCCC---CCEEEEEecChhhHHHHHHhcCCCeecCceee
Q 022301 113 VTGLPSSASWQDLKDHM------------RRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (299)
Q Consensus 113 v~nl~~~~~~~~l~~~f------------~~~G~v~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (299)
+.||+..+++++|+++| ++||.|..+.++.+.. .|||||+|.+.++|++|+..|||..++|+.+.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45666667777776666 9999999999988753 47999999999999999999999999999553
No 375
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=7.8e-10 Score=77.05 Aligned_cols=55 Identities=13% Similarity=0.102 Sum_probs=47.8
Q ss_pred CCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCce
Q 022301 118 SSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (299)
Q Consensus 118 ~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (299)
..+++++|+++|.+||.|..|.|+ ....|||||+|.+.++|+.|++.+++ +.|+.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~ 81 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFATVKAAELAVQNEVG--LVDNP 81 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSB
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCe
Confidence 568999999999999999999988 35667999999999999999998665 45663
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=1.6e-10 Score=77.70 Aligned_cols=72 Identities=17% Similarity=0.237 Sum_probs=60.5
Q ss_pred CCCCeEEEcCCCCC-----CCH----HHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCce
Q 022301 4 RASRTLYVGNLPGD-----IRE----REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (299)
Q Consensus 4 ~~~~~l~V~nLp~~-----~t~----~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~ 74 (299)
-|.-||+|.-++.. .-+ .+|.+.|.+||+|..+++..+ -+||+|.+.++|.+||. |||..+.|+.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----~~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----QMLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----EEEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----cEEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 56778999777643 222 458999999999999999743 39999999999999999 9999999999
Q ss_pred EEEEEcc
Q 022301 75 LRVELAH 81 (299)
Q Consensus 75 i~v~~~~ 81 (299)
|+|.+..
T Consensus 87 L~V~~k~ 93 (95)
T 1ufw_A 87 VKISGPS 93 (95)
T ss_dssp EEEECCC
T ss_pred EEEeccC
Confidence 9998753
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=1.1e-09 Score=73.32 Aligned_cols=74 Identities=18% Similarity=0.146 Sum_probs=59.0
Q ss_pred CccEEEEeCCCC----CCCH----HHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCceeeE
Q 022301 107 SEYRVLVTGLPS----SASW----QDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (299)
Q Consensus 107 ~~~~l~v~nl~~----~~~~----~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (299)
+..+|+|..++. .+.. .+|.+.|.+||.|..+.+..+ .+||+|.+.++|.+|++ |||..++|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d----~~fVtF~d~~sAlaAi~-mnG~~v~Gr---- 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED----KMWVTFLEGSSALNVLS-LNGKELLNR---- 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS----SEEEEESSHHHHHHGGG-GTTCEETTE----
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC----CEEEEECChHHHHHHHh-cCCeEeCCe----
Confidence 446777776652 3333 779999999999999999988 48999999999999999 999999999
Q ss_pred EEEecccccCC
Q 022301 179 YVRVREYDHRR 189 (299)
Q Consensus 179 ~~~~~~~~~~~ 189 (299)
.++|....+.+
T Consensus 77 ~LkV~lkt~dW 87 (91)
T 2dnr_A 77 TITIALKSPSG 87 (91)
T ss_dssp EEEEEECCCSS
T ss_pred EEEEEeCCCCc
Confidence 55555554443
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.94 E-value=1.5e-09 Score=87.59 Aligned_cols=77 Identities=25% Similarity=0.309 Sum_probs=63.2
Q ss_pred CCCeEEEcCCCC-----CCCHHHHHHHhhhcCCeeEEEeec-------CCCCCceEEEEecChHHHHHHHHhcCCCCCCC
Q 022301 5 ASRTLYVGNLPG-----DIREREVEDLFYKYGPIAHIDLKI-------PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (299)
Q Consensus 5 ~~~~l~V~nLp~-----~~t~~~l~~~F~~~G~v~~i~~~~-------~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g 72 (299)
.+..|.+.|+-. .-.+++|.+.|++||+|..+.|.. ++.++|++||+|.+.++|.+|+..|||.+|.|
T Consensus 123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g 202 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 202 (222)
T ss_dssp BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC
Confidence 344555555522 234678999999999999999942 23677999999999999999999999999999
Q ss_pred ceEEEEEcc
Q 022301 73 HRLRVELAH 81 (299)
Q Consensus 73 ~~i~v~~~~ 81 (299)
+.|.|.++.
T Consensus 203 r~i~~~~~~ 211 (222)
T 3dxb_A 203 RKVVAEVYD 211 (222)
T ss_dssp SBCEEEECC
T ss_pred eEEEEEEcC
Confidence 999999974
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=8.5e-09 Score=69.37 Aligned_cols=66 Identities=9% Similarity=0.147 Sum_probs=55.9
Q ss_pred CCccEEEEeCCCCC-----CCH----HHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 106 RSEYRVLVTGLPSS-----ASW----QDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 106 ~~~~~l~v~nl~~~-----~~~----~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
++..+|+|..++.. +.. .+|.+.|.+||+|..+.+..+. +||+|.+.++|.+||. |||.+++|+.+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~Gr~L 87 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVKGRAV 87 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEETTEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeCCeEE
Confidence 45578888887642 322 6699999999999999999884 9999999999999999 99999999944
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.77 E-value=4e-08 Score=67.40 Aligned_cols=72 Identities=15% Similarity=0.155 Sum_probs=65.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhc-----CCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEE
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKY-----GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-----G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 78 (299)
+..++|-|-|||..+++..|..|+..+ |.|..|.+..+ -+-|+|+|.+...|-+|.-.|+|..|.|++|.|.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD---H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD---FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT---TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC---CCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 347899999999999999999999999 99999999754 3579999999999999998899999999999985
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=5.1e-07 Score=61.47 Aligned_cols=89 Identities=24% Similarity=0.339 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhh-----cCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEE
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYK-----YGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~-----~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~ 78 (299)
...++|.|.|||+.+.++.|.-+|++ =|+|..+.... +-|+|+|.+.+.|+..|. -....|.+..|.|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----CGGVLTFREPADAERVLA-QADHELHGAQLSLR 79 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----CcEEEEEcChHHHHHHhc-CCcceecCeEEEEE
Confidence 46789999999999999999999997 25899998863 689999999999999998 44678888999997
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCC
Q 022301 79 LAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSAS 121 (299)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ 121 (299)
.... .....|++.+|++.++
T Consensus 80 P~~~-----------------------~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 80 PAPP-----------------------RAPARLLLQGLPPGTS 99 (104)
T ss_dssp ECCC-----------------------CCCCCCCCCSCCCCCC
T ss_pred cCCC-----------------------CCcceEeeecCCCCCC
Confidence 6432 2235677777777653
No 382
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.58 E-value=4.6e-07 Score=62.04 Aligned_cols=76 Identities=20% Similarity=0.228 Sum_probs=65.1
Q ss_pred CCCCCeEEEcCCCCCC-C----HHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEE
Q 022301 3 SRASRTLYVGNLPGDI-R----EREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (299)
Q Consensus 3 ~~~~~~l~V~nLp~~~-t----~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v 77 (299)
+.-.++|+|+||+..+ + .+.++++|..|+++....+. ++-.-..|.|.++++|.+|-..||+..|.|..|+|
T Consensus 2 s~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l---kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 2 SSGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF---KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CSCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE---TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CCCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec---CcceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3567899999998864 2 25688999999999888886 33447899999999999999999999999999999
Q ss_pred EEcc
Q 022301 78 ELAH 81 (299)
Q Consensus 78 ~~~~ 81 (299)
.++.
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 9987
No 383
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.48 E-value=2.7e-07 Score=74.23 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHhcCCeeEEEEEeCCCC--------CEEEEEecChhhHHHHHHhcCCCeecCceeeEEE
Q 022301 120 ASWQDLKDHMRRAGDVCFSQVFRDGSG--------TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (299)
Q Consensus 120 ~~~~~l~~~f~~~G~v~~~~~~~~~~~--------~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~ 180 (299)
-.+++|.+.|.+||.|..+.+..+... |++||+|.+.++|.+|+..|||..++|+.+.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~ 209 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEV 209 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEE
Confidence 357899999999999999999865432 6999999999999999999999999999765443
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.38 E-value=3e-06 Score=58.13 Aligned_cols=68 Identities=13% Similarity=0.100 Sum_probs=61.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhc-----CCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRRA-----GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~-----G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
...+|-+-|||..+++..|..++.++ |.+..+.+..+-. -|+|+|.+...|-+|.-.|+|.+|+|+.+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~--GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN--GAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT--EEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC--ceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 35789999999999999999999999 9999988887765 79999999999999999999999999844
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.12 E-value=7.8e-06 Score=55.05 Aligned_cols=65 Identities=15% Similarity=0.232 Sum_probs=54.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC-----CCCCceEEEEecChHHHHHHHHhcCCCCCC
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-----PRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~-----~~~~g~afV~F~~~e~A~~A~~~l~~~~~~ 71 (299)
++|.|.+||+.+|++++.+.+..+..+....+... .....-|||.|.+.+++......++|..|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 57899999999999999999999988776666321 123367999999999999999999998764
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.09 E-value=1.1e-05 Score=54.16 Aligned_cols=55 Identities=20% Similarity=0.344 Sum_probs=47.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcC
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~ 66 (299)
...++| ++|+.....||.++|+.||.|.--+|. -..|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid-----DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID-----DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE-----TTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc-----CCeEEEEecCHHHHHHHHHhcc
Confidence 467778 999999999999999999977666665 2389999999999999999763
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.02 E-value=1.7e-05 Score=55.89 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=59.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCC-ceEEEEEc
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG-HRLRVELA 80 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g-~~i~v~~~ 80 (299)
..+.|.|-+.|+.. ...|...|.+||+|...... ...++..|.|.+..+|++||. .||..|.| ..|-|.++
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 36788899999985 67888999999999998872 335699999999999999999 89999985 55666664
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.94 E-value=1.3e-05 Score=53.97 Aligned_cols=54 Identities=20% Similarity=0.344 Sum_probs=45.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcC
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~ 66 (299)
..++| ++|+.....||.++|+.||.|.--+|. -..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wid-----DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID-----DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEE-----TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEEc-----CCeEEEEecCHHHHHHHHHhcc
Confidence 46777 999999999999999999955544444 2389999999999999999764
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.89 E-value=5.4e-05 Score=51.79 Aligned_cols=71 Identities=14% Similarity=0.118 Sum_probs=58.9
Q ss_pred ccEEEEeCCCCCC-C----HHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCceeeEEE
Q 022301 108 EYRVLVTGLPSSA-S----WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (299)
Q Consensus 108 ~~~l~v~nl~~~~-~----~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~~ 180 (299)
.++|+|+||+..+ . .+.++++|..|+++......+.-. =..|.|.+.++|..|-..||+..+.|..+..|.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF 80 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence 4789999998865 2 367899999999999887776643 478999999999999999999999999654443
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.73 E-value=0.00027 Score=47.55 Aligned_cols=67 Identities=15% Similarity=0.361 Sum_probs=57.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC------CEEEEEecChhhHHHHHHhcCCCeecCce
Q 022301 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG------TTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (299)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~------~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (299)
++|.|.+||+.+|++++.+.+.....+....+...... .-|||.|.+.+++..-.+.++|..+.+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~k 74 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNK 74 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCC
Confidence 47899999999999999999999998877777666432 27999999999999999999999887654
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.72 E-value=0.0002 Score=50.42 Aligned_cols=67 Identities=15% Similarity=0.212 Sum_probs=55.5
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCce
Q 022301 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (299)
Q Consensus 105 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (299)
.....-|.|.+.|... ...|..+|.+||.|..... .....+..|.|.+..+|++||. .||..|+|..
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~ 87 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALS-KDGRIFGESI 87 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCE
Confidence 3456789999999875 6778889999999998776 3344599999999999999999 6999998754
No 392
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.69 E-value=7.3e-05 Score=50.57 Aligned_cols=77 Identities=19% Similarity=0.244 Sum_probs=54.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecC-----CCCCceEEEEecChHHHHHHHHhcCCCCCCCc-----e
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-----PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-----R 74 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~-----~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~-----~ 74 (299)
.+-+|.|..||+.+|++++.+.+..+-++....+... .....-|||.|.+.+++......++|..|.+. +
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 3567999999999999998888877655433333111 11225789999999999999999999766422 3
Q ss_pred EEEEEcc
Q 022301 75 LRVELAH 81 (299)
Q Consensus 75 i~v~~~~ 81 (299)
..|++|.
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 4566653
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.66 E-value=0.00028 Score=47.47 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=44.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcC
Q 022301 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 167 (299)
Q Consensus 109 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 167 (299)
..++| ++|..+...||.++|..||.|. |..+.|. .|||.|.+.+.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT---sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT---SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT---EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 45555 9999999999999999999554 4444443 89999999999999999763
No 394
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.51 E-value=0.00064 Score=46.29 Aligned_cols=63 Identities=22% Similarity=0.286 Sum_probs=50.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHh-----cCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCeecCc
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRR-----AGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~-----~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 174 (299)
...+|.|.|||+.+.++.|.-+|+. -|.|..++... .-|+|+|.+...|+..+++ ....|.+.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~~~ 74 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELHGA 74 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSSSS
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-CcceecCe
Confidence 4579999999999999999999998 24788887765 4899999999999999985 22344444
No 395
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.47 E-value=0.00013 Score=52.16 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=55.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEE-eec---------------CC-CCCceEEEEecChHHHHHHHHhcC
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHID-LKI---------------PP-RPPGYAFVEFEEARDAEDAIRGRD 66 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~-~~~---------------~~-~~~g~afV~F~~~e~A~~A~~~l~ 66 (299)
+....|.|-+.|+.++ ..|.+.|++||.|.+-. +.. .. ...+...|+|.+..+|.+||. .|
T Consensus 5 ~~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~N 82 (132)
T 3p3d_A 5 NGELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-EN 82 (132)
T ss_dssp ---CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TT
T ss_pred cCceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hC
Confidence 4566778888877755 56778999999987722 110 11 134688999999999999999 99
Q ss_pred CCCCCCceEEEEEc
Q 022301 67 GYDFDGHRLRVELA 80 (299)
Q Consensus 67 ~~~~~g~~i~v~~~ 80 (299)
|..|.|.-|-|.+.
T Consensus 83 G~ii~G~mIGV~Py 96 (132)
T 3p3d_A 83 GAVFNGVLLGVIPY 96 (132)
T ss_dssp TCEETTEECEEEEC
T ss_pred CeEeCcEEEEEEEC
Confidence 99999987777765
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.40 E-value=0.00033 Score=47.27 Aligned_cols=53 Identities=17% Similarity=0.188 Sum_probs=43.8
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcC
Q 022301 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 167 (299)
Q Consensus 110 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 167 (299)
.++| ++|..+...||.++|..||. ..|..+.+. .|||.|.+.+.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 4555 99999999999999999994 345555553 89999999999999999764
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.99 E-value=0.00039 Score=61.26 Aligned_cols=56 Identities=25% Similarity=0.313 Sum_probs=43.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHH
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~ 63 (299)
+.++|+|. .|..+++.+|.++|++||+|.++.+..+. .-||.|||.+.++|..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--SEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--CeEEEEEeCCHHHHHHHHh
Confidence 45789996 79999999999999999999999996433 3699999999999998776
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.83 E-value=0.0014 Score=44.22 Aligned_cols=69 Identities=16% Similarity=0.277 Sum_probs=52.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCC------CEEEEEecChhhHHHHHHhcCCCeecCcee
Q 022301 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG------TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (299)
Q Consensus 108 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~------~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (299)
..+|.|..||+.+|++++.+.+...-++....+...... .-|||.|.+.++...-.+.++|..+.+...
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg 83 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKG 83 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCC
Confidence 468999999999999998888877655433333222211 169999999999999999999999876543
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.42 E-value=0.0039 Score=44.49 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=48.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeE-EEEEe--------------CC---CCCEEEEEecChhhHHHHHHhcCC
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFR--------------DG---SGTTGIVDYTNYDDMKHAIKKLDD 168 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-~~~~~--------------~~---~~~~~fv~f~~~~~a~~a~~~l~g 168 (299)
....|.|.+.|+... ..+.+.|++||.|.. +.+.. -+ ...+..|.|.+..+|++||. .||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 346788889977654 556678999999876 21110 01 23488999999999999999 899
Q ss_pred CeecCc
Q 022301 169 SEFRNA 174 (299)
Q Consensus 169 ~~~~g~ 174 (299)
..|+|.
T Consensus 84 ~ii~G~ 89 (132)
T 3p3d_A 84 AVFNGV 89 (132)
T ss_dssp CEETTE
T ss_pred eEeCcE
Confidence 999996
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.18 E-value=0.015 Score=51.22 Aligned_cols=56 Identities=13% Similarity=0.205 Sum_probs=41.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHh
Q 022301 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKK 165 (299)
Q Consensus 108 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~ 165 (299)
...|+|. .|..+++.+|.++|++||+|..+.+..+. +.||.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-CeEEEEEeCCHHHHHHHHhc
Confidence 3578887 68889999999999999999999888654 35999999999999877653
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.77 E-value=0.066 Score=48.07 Aligned_cols=56 Identities=20% Similarity=0.305 Sum_probs=45.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCC
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG 67 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~ 67 (299)
..+++|+ +|..+...+|.++|+.||.|.-.++. ...|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wid-----dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWID-----DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECS-----SSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEc-----CCeEEEEECCHHHHHHHHHHHHh
Confidence 3577886 99999999999999999965444443 34799999999999999998853
No 402
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=91.31 E-value=0.97 Score=28.75 Aligned_cols=68 Identities=19% Similarity=0.269 Sum_probs=45.1
Q ss_pred eEEEcCC-CCCCCHHHHHHHhhhcC-----CeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 8 TLYVGNL-PGDIREREVEDLFYKYG-----PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 8 ~l~V~nL-p~~~t~~~l~~~F~~~G-----~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
+|||..- -..+...+|..++..-+ .|-.|.+. ..|.||+.... .|..++..|++..+.|+.+.|..+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-----d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-----DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-----SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-----CCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 5777322 33478888888888655 45666665 45999999765 6778888899999999999987653
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=90.25 E-value=2.6 Score=27.47 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=52.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEE
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~ 79 (299)
+.+|-|.|-|||..+-..++.-.....|---.|... -|.|.|.|.+.++-..|+..|-+. .+.+|.++.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-----dgqamirfqnsdeqrlaiqkllnh--nnnklqiei 78 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-----DGQAMIRFQNSDEQRLAIQKLLNH--NNNKLQIEI 78 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-----SSCEEEEESSHHHHHHHHHHHEET--TTTEEEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-----cCeeEEEecCChHHHHHHHHHHhc--CCCEEEEEE
Confidence 467889999999999888888777888866677775 478999999999999998875432 234555544
No 404
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.62 E-value=1.1 Score=40.23 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=44.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcC
Q 022301 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 167 (299)
Q Consensus 108 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 167 (299)
...++|+ +|..+...+|.++|+.||.| .|..+.+. .|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt---~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS---EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC---eEEEEECCHHHHHHHHHHHH
Confidence 4566665 89999999999999999954 34444332 89999999999999999875
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=88.63 E-value=3.5 Score=26.85 Aligned_cols=56 Identities=16% Similarity=0.322 Sum_probs=47.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhc
Q 022301 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 166 (299)
Q Consensus 107 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l 166 (299)
.++-|.|-|+|..+-..++.-.....|--..|..+.. .|.|.|.+.++..-|+.+|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyidg----qamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDG----QAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSS----CEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecC----eeEEEecCChHHHHHHHHH
Confidence 4577889999999999888888888898888877655 7999999999999898876
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=83.87 E-value=1.5 Score=32.80 Aligned_cols=56 Identities=20% Similarity=0.230 Sum_probs=39.8
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHh--hhcCCeeEEEeecCCCCCceEEEEecChHHH-HHHHH
Q 022301 8 TLYVGNLPG-D--------IREREVEDLF--YKYGPIAHIDLKIPPRPPGYAFVEFEEARDA-EDAIR 63 (299)
Q Consensus 8 ~l~V~nLp~-~--------~t~~~l~~~F--~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A-~~A~~ 63 (299)
++.|-|+|. . ....+|.+.| ..|.++.-..+.......|+|.|+|...-.. ..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 456779887 2 4567899977 8999988777755555678999999865443 33444
No 407
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=68.43 E-value=21 Score=23.26 Aligned_cols=54 Identities=11% Similarity=0.222 Sum_probs=38.0
Q ss_pred EcCCCCCCCHHHHHHHhhh-cC-CeeEEEeecCCCCCceEEEEecChHHHHHHHHh
Q 022301 11 VGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG 64 (299)
Q Consensus 11 V~nLp~~~t~~~l~~~F~~-~G-~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~ 64 (299)
+-.+...++..+|++.++. || .|..|.....+....-|||.+....+|......
T Consensus 27 ~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 27 TFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHh
Confidence 3357789999999998885 44 455555544334445799999988888775543
No 408
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=67.67 E-value=21 Score=23.48 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=25.3
Q ss_pred eeEEEeecCCCCCceEEEEecChHHHHHHHHhcCC
Q 022301 33 IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG 67 (299)
Q Consensus 33 v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~ 67 (299)
|..+.+.. ..+||.||++...+++..++..+.|
T Consensus 40 i~~v~vP~--~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILASE--SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEECT--TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEec--ccCCEEEEEEecchhHHHHHHCCCC
Confidence 55555542 4689999999999998888886665
No 409
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=67.48 E-value=23 Score=23.08 Aligned_cols=57 Identities=16% Similarity=0.089 Sum_probs=41.4
Q ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEeCCCCC-EEEEEecChhhHHHHHHhc
Q 022301 110 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKKL 166 (299)
Q Consensus 110 ~l~v~nl~~~~~~~~l~~~f~~-~G-~v~~~~~~~~~~~~-~~fv~f~~~~~a~~a~~~l 166 (299)
+.++..+...++..+|++.++. || +|..+..+.-+.+. -|||.+..-.+|.+...++
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHHS
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHhh
Confidence 3445556778899999999988 55 66667666654432 7999999988888766554
No 410
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=62.52 E-value=1.2 Score=32.58 Aligned_cols=28 Identities=14% Similarity=0.368 Sum_probs=19.2
Q ss_pred HHHHHHhhhcCCeeEEEeecCCCCCceEEEEec
Q 022301 21 REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFE 53 (299)
Q Consensus 21 ~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~ 53 (299)
+|+.+||...|.|+.+... +||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~-----kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR-----MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT-----TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC-----CCeeEEeeC
Confidence 5667788888887766654 899999986
No 411
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=62.09 E-value=35 Score=24.54 Aligned_cols=57 Identities=19% Similarity=0.193 Sum_probs=41.2
Q ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEeCCCCC-EEEEEecChhhHHHHHHhc
Q 022301 110 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKKL 166 (299)
Q Consensus 110 ~l~v~nl~~~~~~~~l~~~f~~-~G-~v~~~~~~~~~~~~-~~fv~f~~~~~a~~a~~~l 166 (299)
+.++..+...++..+|++.++. || .|..|..+.-+.+. -|||.+..-.+|.+....+
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnki 139 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANRI 139 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHHhh
Confidence 4556666788899999999887 55 66667666555432 6999998888877765544
No 412
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=61.93 E-value=34 Score=24.82 Aligned_cols=57 Identities=11% Similarity=0.128 Sum_probs=41.1
Q ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEeCCCCC-EEEEEecChhhHHHHHHhc
Q 022301 110 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKKL 166 (299)
Q Consensus 110 ~l~v~nl~~~~~~~~l~~~f~~-~G-~v~~~~~~~~~~~~-~~fv~f~~~~~a~~a~~~l 166 (299)
+.++..+...++..+|++.++. || .|..|..+.-+.+. -|||.+..-.+|.+....+
T Consensus 88 N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAnki 147 (150)
T 4a17_R 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLANKI 147 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHHhh
Confidence 4555556778899999999887 55 66667666655432 6999998888887765544
No 413
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=58.14 E-value=26 Score=22.71 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=36.7
Q ss_pred EcCCCCCCCHHHHHHHhhh-cC-CeeEEEeecCCCCCceEEEEecChHHHHHHHH
Q 022301 11 VGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (299)
Q Consensus 11 V~nLp~~~t~~~l~~~F~~-~G-~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~ 63 (299)
+-.++..++..+|++.++. || +|..|.........--|||.+....+|.....
T Consensus 26 ~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 26 QFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHT
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHHH
Confidence 4467889999999988875 45 55666554433344579999988877665543
No 414
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=55.52 E-value=30 Score=20.92 Aligned_cols=55 Identities=9% Similarity=0.000 Sum_probs=41.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHh
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG 64 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~ 64 (299)
..++.|.++.-.--...|...+.. ..|..+.+... .+.+.|.|.+.++...++..
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~---~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN---EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS---EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc---CCEEEEEECCHHHHHHHHHH
Confidence 357889999877777889999999 88988888632 45778888856666667764
No 415
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=55.32 E-value=36 Score=24.74 Aligned_cols=57 Identities=16% Similarity=0.113 Sum_probs=40.6
Q ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEeCCCCC-EEEEEecChhhHHHHHHhc
Q 022301 110 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKKL 166 (299)
Q Consensus 110 ~l~v~nl~~~~~~~~l~~~f~~-~G-~v~~~~~~~~~~~~-~~fv~f~~~~~a~~a~~~l 166 (299)
+.|+..+...++..+|++.++. || .|..|..+.-+.+. -|||.+..-.+|.+....+
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnki 149 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKI 149 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHGGG
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHHhh
Confidence 4555556778888999988887 55 56667666555432 7999999888887765544
No 416
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=53.45 E-value=19 Score=27.24 Aligned_cols=46 Identities=9% Similarity=-0.053 Sum_probs=33.8
Q ss_pred EEcCCCCCCCHHH--------HHHHhhhcCCeeEEEeecCCCCCceEEEEecCh
Q 022301 10 YVGNLPGDIRERE--------VEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA 55 (299)
Q Consensus 10 ~V~nLp~~~t~~~--------l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~ 55 (299)
|+-.||..++.++ ++++|..+|-|.++-|..++.....|-|.|++-
T Consensus 74 ~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~~~NpHaHim~t~R 127 (185)
T 2ns6_A 74 VEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGGGENPHCHLMISER 127 (185)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEETTTEEEEEEEECCB
T ss_pred EEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCCCCCceEEEEEeec
Confidence 3448999999887 344566778888888865444556888888876
No 417
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=52.04 E-value=48 Score=22.79 Aligned_cols=25 Identities=32% Similarity=0.714 Sum_probs=20.2
Q ss_pred CCceEEEEecChH-----HHHHHHHhcCCC
Q 022301 44 PPGYAFVEFEEAR-----DAEDAIRGRDGY 68 (299)
Q Consensus 44 ~~g~afV~F~~~e-----~A~~A~~~l~~~ 68 (299)
..||.||++...+ ++...+....|.
T Consensus 61 fPGYVFV~~~~~~~~~~~~~~~~vr~t~gV 90 (119)
T 1nz8_A 61 FPGYLFIQMDLGDEEEPNEAWEVVRGTPGI 90 (119)
T ss_dssp STTEEEEEECCCSSSSCCHHHHHHHHSTTC
T ss_pred CCCEEEEEeeccccccchhHHHHHHcCCCc
Confidence 6799999998877 777888877663
No 418
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=50.00 E-value=40 Score=24.42 Aligned_cols=51 Identities=8% Similarity=0.114 Sum_probs=35.4
Q ss_pred CCCCCCCHHHHHHHhhhc-C-CeeEEEeecCCCCCceEEEEecChHHHHHHHH
Q 022301 13 NLPGDIREREVEDLFYKY-G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (299)
Q Consensus 13 nLp~~~t~~~l~~~F~~~-G-~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~ 63 (299)
-+...++..||++.++.+ | .|..|.........--|||.+....+|.....
T Consensus 93 ~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAn 145 (150)
T 4a17_R 93 YVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLAN 145 (150)
T ss_dssp EECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHH
Confidence 567789999999888754 4 45555554333344579999998877776544
No 419
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=49.99 E-value=70 Score=23.37 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=40.2
Q ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEeCCCCC-EEEEEecChhhHHHHHHhc
Q 022301 110 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKKL 166 (299)
Q Consensus 110 ~l~v~nl~~~~~~~~l~~~f~~-~G-~v~~~~~~~~~~~~-~~fv~f~~~~~a~~a~~~l 166 (299)
+.|+..+...++..+|++.++. || .|..|..+.-+.+. -|||.+..-.+|.+....+
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~ki 153 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKI 153 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHHHC
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHHhc
Confidence 4556666788999999999987 56 66667666554432 6999998887766655543
No 420
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=48.48 E-value=53 Score=21.26 Aligned_cols=56 Identities=16% Similarity=0.164 Sum_probs=40.1
Q ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEeCCCC-CEEEEEecChhhHHHHHHh
Q 022301 110 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSG-TTGIVDYTNYDDMKHAIKK 165 (299)
Q Consensus 110 ~l~v~nl~~~~~~~~l~~~f~~-~G-~v~~~~~~~~~~~-~~~fv~f~~~~~a~~a~~~ 165 (299)
+-++..+...++..+|++.++. || +|..+....-+.+ .-|+|.+..-.+|......
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~~k 81 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVASR 81 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHTT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHHHh
Confidence 3445556788999999999987 56 6667766665543 2699999888777665543
No 421
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=48.43 E-value=69 Score=22.60 Aligned_cols=50 Identities=10% Similarity=0.218 Sum_probs=30.7
Q ss_pred CHHHHHHHHHhcC-CeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCCee
Q 022301 121 SWQDLKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171 (299)
Q Consensus 121 ~~~~l~~~f~~~G-~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~ 171 (299)
.-..+.+.+...| .|..+..........+.+.+++.+.|.+++.. .|..+
T Consensus 85 vla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~d~~~A~~~L~~-~g~~v 135 (144)
T 2f06_A 85 ALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKE-KKVDL 135 (144)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH-TTCEE
T ss_pred HHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeCCHHHHHHHHHH-cCCEE
Confidence 3456666777766 55454443222223666788888888888875 56555
No 422
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=46.90 E-value=44 Score=24.02 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=36.0
Q ss_pred EcCCCCCCCHHHHHHHhhhc-C-CeeEEEeecCCCCCceEEEEecChHHHHHHHH
Q 022301 11 VGNLPGDIREREVEDLFYKY-G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (299)
Q Consensus 11 V~nLp~~~t~~~l~~~F~~~-G-~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~ 63 (299)
+-.+...++..+|++.++.+ | .|..|.........--|||.+....+|.....
T Consensus 83 vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 83 VFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIAN 137 (142)
T ss_dssp EEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHH
Confidence 33567789999999888754 4 45566554333344579999998877776544
No 423
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=46.75 E-value=58 Score=21.27 Aligned_cols=54 Identities=9% Similarity=0.026 Sum_probs=35.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhhcCCe---eEEEeec-CCCCCceEEEEecChHHHHHHHHhc
Q 022301 9 LYVGNLPGDIREREVEDLFYKYGPI---AHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGR 65 (299)
Q Consensus 9 l~V~nLp~~~t~~~l~~~F~~~G~v---~~i~~~~-~~~~~g~afV~F~~~e~A~~A~~~l 65 (299)
|.+.-+|..++-++|.+.+...-.+ ..+.|.+ +.. --+|.+.+.++-..|+..+
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEe---GD~itisSd~EL~eAl~l~ 74 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEE---GDPCTVSSQLELEEAFRLY 74 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSS---SCCEECCSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCC---CCcccccCHHHHHHHHHHH
Confidence 5566788899999988766532222 3455533 222 1378999999999999843
No 424
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=46.03 E-value=47 Score=24.27 Aligned_cols=53 Identities=21% Similarity=0.263 Sum_probs=36.4
Q ss_pred EcCCCCCCCHHHHHHHhhh-cC-CeeEEEeecCCCCCceEEEEecChHHHHHHHH
Q 022301 11 VGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (299)
Q Consensus 11 V~nLp~~~t~~~l~~~F~~-~G-~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~ 63 (299)
+-.+...++..||++.++. || .|..|.........--|||.+....+|.....
T Consensus 97 vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~ 151 (156)
T 2zkr_s 97 VFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVAN 151 (156)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHH
Confidence 3356788999999988875 44 56666553332334579999998877666554
No 425
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.48 E-value=11 Score=22.99 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=9.1
Q ss_pred CceEEEEecCh
Q 022301 45 PGYAFVEFEEA 55 (299)
Q Consensus 45 ~g~afV~F~~~ 55 (299)
+..|||+|.+.
T Consensus 37 ~~~ClV~FeD~ 47 (68)
T 2e5p_A 37 REVCLVQFEDD 47 (68)
T ss_dssp TTEEEEEETTT
T ss_pred CcEEEEEEccC
Confidence 67899999865
No 426
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=42.18 E-value=35 Score=24.82 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=35.0
Q ss_pred CCCCCCCHHHHHHHhhhc-C-CeeEEEeecCCCCCceEEEEecChHHHHHHHH
Q 022301 13 NLPGDIREREVEDLFYKY-G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (299)
Q Consensus 13 nLp~~~t~~~l~~~F~~~-G-~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~ 63 (299)
.+...++..+|++.++.+ | .|..|.........--|||.+....+|.....
T Consensus 95 ~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 95 IVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp EECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHG
T ss_pred EEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 567788888888877743 4 45566554433444579999998888776544
No 427
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=42.18 E-value=72 Score=21.03 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=40.3
Q ss_pred EeCCCCCCCHHHHHHHHHh-cCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCC
Q 022301 113 VTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD 168 (299)
Q Consensus 113 v~nl~~~~~~~~l~~~f~~-~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g 168 (299)
|-.++..+..++|++.... ||...++.+..+ --.|-..+.++..+|++.|+.
T Consensus 33 Ii~f~RPv~f~el~~kv~~afGq~ldl~y~nn----EL~iPL~~Q~DLDkAvelLDr 85 (100)
T 2npt_B 33 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNN----ELVIPLTTQDDLDKAVELLDR 85 (100)
T ss_dssp EEEECSSCCHHHHHHHHHHHHTSCEEEEEEET----TEEEECCCHHHHHHHHHHHHH
T ss_pred EEecCCCccHHHHHHHHHHHhCCeeeeEEecc----eeEEecccHHHHHHHHHHhcc
Confidence 4445777888999886654 999888888755 356788999999999997654
No 428
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=41.87 E-value=22 Score=23.78 Aligned_cols=54 Identities=20% Similarity=0.308 Sum_probs=41.1
Q ss_pred EEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCC
Q 022301 112 LVTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS 169 (299)
Q Consensus 112 ~v~nl~~~~~~~~l~~~f~~-~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~ 169 (299)
.|-.++..+..++|++.... ||.-.++.+..+ -..|-..+.+|..+|++.|+-.
T Consensus 20 RIi~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~----EllIpl~sQeDLDkaIellDrs 74 (103)
T 2cu1_A 20 RILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNN----ELVIPLTTQDDLDKAVELLDRS 74 (103)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHSSCEEEEECSS----SSCEECCSHHHHHHHHHHHHHC
T ss_pred EEEeccCCccHHHHHHHHHHHhCCeeeEEEecc----eEEEeccCHHHHHHHHHHHccC
Confidence 34456777898998886655 898888877733 3568889999999999987655
No 429
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=41.57 E-value=52 Score=19.24 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=38.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecC---hHHHHHHHH
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEE---ARDAEDAIR 63 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~---~e~A~~A~~ 63 (299)
.++.|.++.-..-...|...+.....|..+.+... .+-+.|.|.. .++...++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~---~~~~~v~~~~~~~~~~i~~~i~ 60 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA---LEQAVVSYHGETTPQILTDAVE 60 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT---TTEEEEEECTTCCHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec---CCEEEEEECCCCCHHHHHHHHH
Confidence 46778888776667789999999888988888643 4577888843 344455555
No 430
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=41.39 E-value=39 Score=22.91 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=27.1
Q ss_pred CeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCC
Q 022301 32 PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68 (299)
Q Consensus 32 ~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~ 68 (299)
.|.++... ...+||-|||=..+.++..|+..+.+.
T Consensus 40 ~I~Si~~~--~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAP--EHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEEC--TTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEec--CCCceEEEEEeCCHHHHHHHHhcccce
Confidence 36666554 346899999999999999999876554
No 431
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=40.16 E-value=15 Score=22.48 Aligned_cols=11 Identities=27% Similarity=0.570 Sum_probs=9.3
Q ss_pred CceEEEEecCh
Q 022301 45 PGYAFVEFEEA 55 (299)
Q Consensus 45 ~g~afV~F~~~ 55 (299)
.+.|+|.|.+.
T Consensus 41 ~gtC~V~F~D~ 51 (66)
T 2eqj_A 41 KQSCFIIFEDS 51 (66)
T ss_dssp TTEEEEEETTT
T ss_pred CcEEEEEEccC
Confidence 68999999864
No 432
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=40.00 E-value=14 Score=23.23 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=9.0
Q ss_pred CceEEEEecCh
Q 022301 45 PGYAFVEFEEA 55 (299)
Q Consensus 45 ~g~afV~F~~~ 55 (299)
+..|||.|.+.
T Consensus 54 ~e~ClV~F~D~ 64 (79)
T 2m0o_A 54 REVCLVQFEDD 64 (79)
T ss_dssp TTEEEEEETTS
T ss_pred CCEEEEEEcCC
Confidence 67899999865
No 433
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=39.08 E-value=19 Score=33.33 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=40.5
Q ss_pred CCCCCCCHHHHHHHhh----hcCCeeEEEeecC--CCCCceEEEEecChHHHHHHHHhcC
Q 022301 13 NLPGDIREREVEDLFY----KYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRD 66 (299)
Q Consensus 13 nLp~~~t~~~l~~~F~----~~G~v~~i~~~~~--~~~~g~afV~F~~~e~A~~A~~~l~ 66 (299)
..+.+.+--||..+|- .+|-|..+.|..- +....+++|.|.+.++|..|+..+-
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHH
Confidence 4556666668889884 7889999988433 3334678999999999999887653
No 434
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=38.83 E-value=26 Score=28.34 Aligned_cols=31 Identities=32% Similarity=0.414 Sum_probs=24.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEe
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDL 38 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~ 38 (299)
..+.|+|||++++..-|..++.. +.+..+.+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 46789999999999999999987 55543333
No 435
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=37.79 E-value=64 Score=19.19 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=41.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEec----ChHHHHHHHHhc
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFE----EARDAEDAIRGR 65 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~----~~e~A~~A~~~l 65 (299)
.++.|.++.-.--...|...+.....|..+.+... .+.+.|.|. +.++...++..+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~---~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL---QNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG---GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec---CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 46788888776667789999999888988888532 457889885 455666676643
No 436
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=37.58 E-value=74 Score=20.68 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=40.1
Q ss_pred EeCCCCCCCHHHHHHHHHh-cCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCC
Q 022301 113 VTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS 169 (299)
Q Consensus 113 v~nl~~~~~~~~l~~~f~~-~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~ 169 (299)
|-.++..+..++|.+.... ||...++.+..+ --.|-..+.++..+|++.|+..
T Consensus 17 Ii~f~RPvkf~dl~qkv~~afGq~ldl~y~nn----EL~iPL~~Q~DLDkAvelLDrs 70 (94)
T 2jrh_A 17 IIAFSRPVKYEDVEHKVTTVFGQPLDLHYMNN----ELSILLKNQDDLDKAIDILDRS 70 (94)
T ss_dssp EEEECSSCCHHHHHHHHHHHHCSSEEEEEECS----SCEEECCSHHHHHHHHHHHHHS
T ss_pred EEecCCCccHHHHHHHHHHHhCCeeeeEEecc----eeEEeccCHHHHHHHHHHhccC
Confidence 3445777888998886654 999888887744 2467889999999999986543
No 437
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=36.16 E-value=13 Score=30.25 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=25.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEe
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL 38 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~ 38 (299)
...+.|+|||++++..-|..++.....+..+.+
T Consensus 114 ~~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~ 146 (279)
T 3uzu_A 114 PSLRIIGNLPYNISSPLLFHLMSFAPVVIDQHF 146 (279)
T ss_dssp CCEEEEEECCHHHHHHHHHHHGGGGGGEEEEEE
T ss_pred CceEEEEccCccccHHHHHHHHhccCCccEEEE
Confidence 346789999999999999999986544544444
No 438
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=36.12 E-value=69 Score=21.40 Aligned_cols=52 Identities=17% Similarity=0.274 Sum_probs=39.7
Q ss_pred EeCCCCCCCHHHHHHHHHh-cCCeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCC
Q 022301 113 VTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD 168 (299)
Q Consensus 113 v~nl~~~~~~~~l~~~f~~-~G~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g 168 (299)
|-.++..+..++|++.... ||...++.+..+ --.|-..+.++..+|++.|+.
T Consensus 44 Iiqf~RPvkf~dl~qkv~~afGq~ldl~y~nn----EL~IPL~~Q~DLDkAvelLDr 96 (111)
T 2c60_A 44 IIAFSRPVKYEDVEHKVTTVFGQPLDLHYMNN----ELSILLKNQDDLDKAIDILDR 96 (111)
T ss_dssp EEEECSSCCHHHHHHHHHHHHSSCCEEEEECS----SCEEECCSHHHHHHHHHHHHH
T ss_pred EEecCCCccHHHHHHHHHHHhCCeeeeEEecc----eEEEecccHHHHHHHHHHhcc
Confidence 4445777888998886654 898888887744 246778899999999997654
No 439
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=35.78 E-value=1.1e+02 Score=22.83 Aligned_cols=49 Identities=20% Similarity=0.318 Sum_probs=34.0
Q ss_pred CccEEEEeCCCC-C--------CCHHHHHHHH--HhcCCeeEEEEEeCCCC--CEEEEEecCh
Q 022301 107 SEYRVLVTGLPS-S--------ASWQDLKDHM--RRAGDVCFSQVFRDGSG--TTGIVDYTNY 156 (299)
Q Consensus 107 ~~~~l~v~nl~~-~--------~~~~~l~~~f--~~~G~v~~~~~~~~~~~--~~~fv~f~~~ 156 (299)
.++..+|-|+|. . ....+|.+.| ..|.++. +..+.+..+ |++.|.|..-
T Consensus 11 WPwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 11 YPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKD 72 (172)
T ss_dssp ESCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSS
T ss_pred CCCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCC
Confidence 456888888886 2 3457899977 8888876 444444433 5899999864
No 440
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=34.54 E-value=34 Score=22.98 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=19.1
Q ss_pred CCHHHHHHHhhhcCCeeEEEee
Q 022301 18 IREREVEDLFYKYGPIAHIDLK 39 (299)
Q Consensus 18 ~t~~~l~~~F~~~G~v~~i~~~ 39 (299)
.+++.|.++|..+|+|..-.+.
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MF 25 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMF 25 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEET
T ss_pred hHHHHHHHHHhccCCceEeecc
Confidence 4677899999999999998886
No 441
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=33.55 E-value=62 Score=28.12 Aligned_cols=60 Identities=27% Similarity=0.333 Sum_probs=41.1
Q ss_pred eEEEcCCCCCC----CHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCce
Q 022301 8 TLYVGNLPGDI----REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (299)
Q Consensus 8 ~l~V~nLp~~~----t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~ 74 (299)
--+||||..-. ....+.++..+||+|..+.+- +.-+|...+.+.|..++. -++..+.++.
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~~k~il~-~~~~~f~~rp 79 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG------TKTTVIVGHHQLAKEVLI-KKGKDFSGRP 79 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET------TEEEEEECSHHHHHHHHT-TTTTTTBBCC
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC------CCCEEEECCHHHHHHHHH-hCcHhhCCCC
Confidence 34688876432 235677888899999888873 245777889999888886 3444554443
No 442
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=33.20 E-value=1.1e+02 Score=20.45 Aligned_cols=63 Identities=11% Similarity=0.209 Sum_probs=41.8
Q ss_pred CCCCCCCHHHHHHHh-hhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCCCceEEEEEcc
Q 022301 13 NLPGDIREREVEDLF-YKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (299)
Q Consensus 13 nLp~~~t~~~l~~~F-~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 81 (299)
.++..+.-++|..-. ..||.-.++... ..-+.|-..+.++.++|++.|+-. ..-+.|+|-...
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-----n~EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~ 86 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYT-----NNELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVI 86 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEEC-----SSSSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEE
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEe-----cceEEEeccCHHHHHHHHHHHccC-CcccceEEEEec
Confidence 456677877776544 478877777665 224689999999999999976654 222334444443
No 443
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=32.92 E-value=78 Score=19.96 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=39.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecC----hHHHHHHHHhc
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEE----ARDAEDAIRGR 65 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~----~e~A~~A~~~l 65 (299)
..+|.|.++.-..-...|...+.....|..+.+... .+.+.|.|.. .++...++..+
T Consensus 4 ~~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~---~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 4 TATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLE---NRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETT---TTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEcc---CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 346778777655555678889998888988888643 4678888853 45556666644
No 444
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.36 E-value=9 Score=23.03 Aligned_cols=13 Identities=23% Similarity=0.399 Sum_probs=9.8
Q ss_pred CCceEEEEecChH
Q 022301 44 PPGYAFVEFEEAR 56 (299)
Q Consensus 44 ~~g~afV~F~~~e 56 (299)
.+..|||.|.+..
T Consensus 34 ~~~~ClV~FeD~s 46 (63)
T 2e5q_A 34 SKQSCLVTFEDNS 46 (63)
T ss_dssp TTSEEEEEETTSC
T ss_pred CCCEEEEEEccCc
Confidence 3678999998653
No 445
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=31.61 E-value=87 Score=27.86 Aligned_cols=60 Identities=10% Similarity=0.157 Sum_probs=30.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhhc---CC---eeEEEeecCCCCCceE-EEEecChHHHHHHHHhcCC
Q 022301 6 SRTLYVGNLPGDIREREVEDLFYKY---GP---IAHIDLKIPPRPPGYA-FVEFEEARDAEDAIRGRDG 67 (299)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~---G~---v~~i~~~~~~~~~g~a-fV~F~~~e~A~~A~~~l~~ 67 (299)
.++|.|+-||+.++.+.|.+..... +. |.++.=..+. .|.- .|++.....++..+..|..
T Consensus 275 ~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd~--~gvrivIelk~~~~~e~vl~~L~k 341 (514)
T 2inr_A 275 RKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDR--TGLRIAIELKKDVNSESIKNYLYK 341 (514)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEECCBT--TBCCEEEEC------CHHHHHHTT
T ss_pred ccEEEEEecCceeeHHHHHHHHHHHHhcCCcCccchhhhcCCC--CceEEEEEECCCcCHHHHHHHHHH
Confidence 4789999999999998877654422 33 3333322121 2333 4456655555555554433
No 446
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=31.59 E-value=38 Score=21.86 Aligned_cols=27 Identities=15% Similarity=0.306 Sum_probs=23.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhc
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKY 30 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~ 30 (299)
+...+|.|.+.+.+++.++..+++..|
T Consensus 17 NtPvvi~v~~~~q~v~~~eae~~L~~F 43 (87)
T 2rf4_B 17 NTPVVIHATQLPQHVSTDEVLQFLESF 43 (87)
T ss_dssp CCCCEEEESSCCEECCHHHHHHHHHHH
T ss_pred CCCeEEEeecCCccCCHHHHHHHHHHH
Confidence 456789999999999999999999887
No 447
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=30.51 E-value=20 Score=22.38 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=14.3
Q ss_pred CHHHHHHHhhhcCCeeEE
Q 022301 19 REREVEDLFYKYGPIAHI 36 (299)
Q Consensus 19 t~~~l~~~F~~~G~v~~i 36 (299)
|--||++++.+||.|+.+
T Consensus 4 tlYDVqQLLK~fG~~IY~ 21 (72)
T 2nn4_A 4 TFYDVQQLLKTFGHIVYF 21 (72)
T ss_dssp SHHHHHHHHHTTTCCCCC
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 556899999999977654
No 448
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=29.36 E-value=1.2e+02 Score=19.72 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=28.3
Q ss_pred HHHHHHHhcC-CeeEEEEEeCCCCCEEEEEecChhhHHHHHHhcCCC
Q 022301 124 DLKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS 169 (299)
Q Consensus 124 ~l~~~f~~~G-~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~ 169 (299)
.|.+.+...| .|..+.+. ..-.||.||++...++...++..+.|.
T Consensus 28 ~L~~~~~~~~l~i~~v~vP-~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 28 LMASRAEKEQLDVYSILAS-ESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp HHHHHHHHTTCCEEEEEEC-TTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred HHHHHHHhcCCcEEEEEEe-cccCCEEEEEEecchhHHHHHHCCCCc
Confidence 3443333334 33333333 235679999999999988888876653
No 449
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=28.06 E-value=30 Score=20.47 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=9.1
Q ss_pred CceEEEEecChH
Q 022301 45 PGYAFVEFEEAR 56 (299)
Q Consensus 45 ~g~afV~F~~~e 56 (299)
...|+|.|.+..
T Consensus 31 ~~~clV~F~D~s 42 (58)
T 4hcz_A 31 REVCLVQFEDDS 42 (58)
T ss_dssp TTEEEEEETTSC
T ss_pred CCEEEEEEcCCC
Confidence 568999998653
No 450
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=27.73 E-value=38 Score=26.90 Aligned_cols=24 Identities=29% Similarity=0.252 Sum_probs=20.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhc
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKY 30 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~ 30 (299)
..+.|+|||++++...|..++...
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~ 114 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYT 114 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTG
T ss_pred ceEEEECCCCCccHHHHHHHHhcC
Confidence 357899999999999988888754
No 451
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=27.62 E-value=38 Score=22.47 Aligned_cols=21 Identities=19% Similarity=0.052 Sum_probs=14.6
Q ss_pred EcCCCCCCCHHHHHHHhh-hcC
Q 022301 11 VGNLPGDIREREVEDLFY-KYG 31 (299)
Q Consensus 11 V~nLp~~~t~~~l~~~F~-~~G 31 (299)
|.+|.+.+|-.||...+. ..|
T Consensus 21 VsGvT~~TTC~DVV~aL~~~~G 42 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQAIG 42 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHHHHS
T ss_pred EECCCCCCcHHHHHHHHHhccC
Confidence 457888889888877544 334
No 452
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=27.56 E-value=38 Score=28.62 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=19.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhh
Q 022301 8 TLYVGNLPGDIREREVEDLFYK 29 (299)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~ 29 (299)
.+.|+|||++++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 5789999999999999888874
No 453
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=27.50 E-value=96 Score=18.04 Aligned_cols=48 Identities=13% Similarity=0.137 Sum_probs=37.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecC
Q 022301 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEE 54 (299)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~ 54 (299)
....++.|.++.-..-...|...+.....|..+.+... .+.+.|.|..
T Consensus 3 ~~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~---~~~~~v~~~~ 50 (75)
T 1yjr_A 3 DGVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALA---TNKAHIKYDP 50 (75)
T ss_dssp CCCEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETT---TTEEEEEECT
T ss_pred ceEEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEec---CCEEEEEECC
Confidence 55668889999777677789999998888988888633 4678888864
No 454
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=27.38 E-value=1.7e+02 Score=20.85 Aligned_cols=43 Identities=12% Similarity=0.221 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCeeEEEEEeCC--CC-------------C----EEEEEecChhhHHHHHHh
Q 022301 123 QDLKDHMRRAGDVCFSQVFRDG--SG-------------T----TGIVDYTNYDDMKHAIKK 165 (299)
Q Consensus 123 ~~l~~~f~~~G~v~~~~~~~~~--~~-------------~----~~fv~f~~~~~a~~a~~~ 165 (299)
+...++|..||.+..+..-.+. .+ + |.+|+|.+.+....+..+
T Consensus 48 ~~a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~k 109 (141)
T 2okq_A 48 AKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQK 109 (141)
T ss_dssp HHHHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHH
Confidence 4456899999988877665442 11 1 899999999888777754
No 455
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=27.27 E-value=36 Score=27.00 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=22.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeE
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYGPIAH 35 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~ 35 (299)
..+.|+|||++++..-|..++.....+..
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~ 124 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPL 124 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCce
Confidence 35789999999999999999986543333
No 456
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=26.50 E-value=73 Score=27.38 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=35.5
Q ss_pred EEcCCCCC---CCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHH
Q 022301 10 YVGNLPGD---IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (299)
Q Consensus 10 ~V~nLp~~---~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~ 63 (299)
+||||..- -....+.++..+||+|..+.+- +.-+|.+.+.+.+..++.
T Consensus 20 liG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g------~~~~vvv~~~~~v~~il~ 70 (476)
T 3e6i_A 20 IIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVG------SQRMVVMHGYKAVKEALL 70 (476)
T ss_dssp TTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEET------TEEEEEECSHHHHHHHHH
T ss_pred cccChhhhccccHhHHHHHHHHHhCCEEEEEEC------CccEEEECCHHHHHHHHh
Confidence 46666432 2245678889999999888773 356888899999999887
No 457
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=26.20 E-value=39 Score=29.20 Aligned_cols=55 Identities=18% Similarity=0.208 Sum_probs=34.5
Q ss_pred EEcCCCC---CCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCC
Q 022301 10 YVGNLPG---DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (299)
Q Consensus 10 ~V~nLp~---~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~ 71 (299)
+||||.. .-....+.++..+||+|..+.+- +.-+|...+++.+..++. -++..+.
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~i~~vl~-~~~~~f~ 77 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA------WTPVVVLNGLAAVREALV-THGEDTA 77 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET------TEEEEEEEHHHHHHHHHT-TTGGGSC
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC------CeeEEEECCHHHHHHHHH-hCChhhc
Confidence 4666543 22344577888999999888773 233566677877777765 3344443
No 458
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=25.77 E-value=18 Score=28.88 Aligned_cols=31 Identities=29% Similarity=0.345 Sum_probs=23.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEe
Q 022301 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDL 38 (299)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~ 38 (299)
...|+|||++++...|..++...+.+..+.+
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~l 128 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHF 128 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEE
Confidence 3479999999999999999987655544433
No 459
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=25.62 E-value=95 Score=17.38 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=37.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecC---hHHHHHHHHh
Q 022301 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEE---ARDAEDAIRG 64 (299)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~---~e~A~~A~~~ 64 (299)
++.|.++.-..-...|...+.....|..+.+... .+.+.|.|.. .++...++..
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~---~~~~~v~~~~~~~~~~i~~~i~~ 60 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVE---KKSVVVEFDAPATQDLIKEALLD 60 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETT---TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcC---CCEEEEEECCCCCHHHHHHHHHH
Confidence 5667777665556778899988878888888633 4577888863 3444555553
No 460
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=25.32 E-value=41 Score=30.01 Aligned_cols=41 Identities=22% Similarity=0.411 Sum_probs=28.2
Q ss_pred HHHHHh--hhcCCeeEEEeecCCCC--CceEEEEecChHHHHHHH
Q 022301 22 EVEDLF--YKYGPIAHIDLKIPPRP--PGYAFVEFEEARDAEDAI 62 (299)
Q Consensus 22 ~l~~~F--~~~G~v~~i~~~~~~~~--~g~afV~F~~~e~A~~A~ 62 (299)
+|..+| +.+|-|..+.+...+.+ ...+++.|.+.++|..|+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHH
Confidence 456677 37899999998443333 345789999988876643
No 461
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=24.71 E-value=52 Score=21.04 Aligned_cols=20 Identities=15% Similarity=0.484 Sum_probs=17.7
Q ss_pred cCCCCCCCHHHHHHHhhhcC
Q 022301 12 GNLPGDIREREVEDLFYKYG 31 (299)
Q Consensus 12 ~nLp~~~t~~~l~~~F~~~G 31 (299)
|.|+..+|+++|++++....
T Consensus 50 Gqi~~ki~e~~L~~lL~~i~ 69 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRVA 69 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHc
Confidence 67889999999999999864
No 462
>2x4i_A CAG38848, uncharacterized protein 114; unknown function, DUF1874, archeal virus; 2.20A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=23.62 E-value=1.8e+02 Score=19.90 Aligned_cols=65 Identities=17% Similarity=0.287 Sum_probs=36.8
Q ss_pred EEEecChHHHHHHHHhcCCCCCCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeC----CCCC--CCH
Q 022301 49 FVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTG----LPSS--ASW 122 (299)
Q Consensus 49 fV~F~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n----l~~~--~~~ 122 (299)
||-+--+++..+++..|-|..+.-..+.+.... +-.++|-- ||.. .+.
T Consensus 41 ~iSaIGH~sTA~lls~Llg~~ip~NR~~i~~~~--------------------------GD~alv~~L~~Rl~EG~vl~~ 94 (114)
T 2x4i_A 41 IINSIGHDSTIQLINSLCGTTFQKNRVEIKLEK--------------------------EDKLYVVQISQRLEEGKILTL 94 (114)
T ss_dssp EEECCCCHHHHHHHHHHHCCCCCCCCCCCCBCT--------------------------TCEEEEEEEC-------CCCH
T ss_pred eEEeeccHHHHHHHHHHhCCCccccceeEEecC--------------------------CCEEEEEEecccCCCCccCCH
Confidence 777777788888888777766543333332221 12222222 4443 477
Q ss_pred HHHHHHHHhcCCeeEEEE
Q 022301 123 QDLKDHMRRAGDVCFSQV 140 (299)
Q Consensus 123 ~~l~~~f~~~G~v~~~~~ 140 (299)
++|.++|.+ |.|....+
T Consensus 95 eEi~k~~e~-g~i~~~~~ 111 (114)
T 2x4i_A 95 EEILKLYES-GKVQFFEI 111 (114)
T ss_dssp HHHHHHHHH-TCEEEEEE
T ss_pred HHHHHHHHc-CceEEEEE
Confidence 999999775 77665544
No 463
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=23.62 E-value=2.8e+02 Score=24.54 Aligned_cols=59 Identities=12% Similarity=0.133 Sum_probs=33.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhh---cCC---eeEEEeecCCCCCceEEEEecChHHHHHHHHh
Q 022301 5 ASRTLYVGNLPGDIREREVEDLFYK---YGP---IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG 64 (299)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~---~G~---v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~ 64 (299)
..++|.|+-||+.++.+.|.+.... -+. |.++.=..+..+- --.|++.....++..+..
T Consensus 225 ~~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd~~gv-rivIelk~~~~~~~~l~~ 289 (500)
T 3lpx_A 225 GKETIIVHELPYQVNKARLIEKMAELVKDKRLEGISALRDESDKDGM-RMVIEIKRGEVGEVVLNN 289 (500)
T ss_dssp CCEEEEEEECCTTCCHHHHHHHHHHHHHTTSSCSEEEEEECCCSSCC-CEEEEECTTSCHHHHHHH
T ss_pred CCceEEEEecCCccCHHHHHHHHHHHHhcCCCCccccchhcCCCCce-EEEEEECCCCCHHHHHHH
Confidence 4578999999999998887765442 233 3444332222222 234566655555444443
No 464
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=23.49 E-value=60 Score=17.19 Aligned_cols=15 Identities=13% Similarity=0.208 Sum_probs=12.6
Q ss_pred CCCCHHHHHHHhhhc
Q 022301 16 GDIREREVEDLFYKY 30 (299)
Q Consensus 16 ~~~t~~~l~~~F~~~ 30 (299)
.+++.++|+.+|...
T Consensus 20 rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 20 IDTDLNQLKEVFSGI 34 (37)
T ss_dssp SCCCHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHHc
Confidence 368999999999875
No 465
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=22.81 E-value=64 Score=23.28 Aligned_cols=34 Identities=35% Similarity=0.374 Sum_probs=26.3
Q ss_pred eeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCC
Q 022301 33 IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68 (299)
Q Consensus 33 v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~ 68 (299)
|..+.+.. ..+||.||++...+++..++..+.|.
T Consensus 33 i~~v~vp~--~fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPS--RVKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECT--TCCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeec--CCCcEEEEEEEchHHHHHHHhCCCCE
Confidence 55666542 36899999999999988898877763
No 466
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=22.35 E-value=1.2e+02 Score=17.29 Aligned_cols=55 Identities=13% Similarity=0.123 Sum_probs=37.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecC---hHHHHHHHHh
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEE---ARDAEDAIRG 64 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~---~e~A~~A~~~ 64 (299)
.++.|.++.-..-...|...+.....|..+.+... .+.+.|.|.. .++...++..
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~---~~~~~v~~~~~~~~~~i~~~i~~ 62 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFA---LEQAVVSYHGETTPQILTDAVER 62 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT---TTEEEEEEC---CHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEcc---CCEEEEEECCCCCHHHHHHHHHH
Confidence 46778888665556678899998888988888643 4578888863 3344455553
No 467
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=22.27 E-value=51 Score=15.24 Aligned_cols=12 Identities=42% Similarity=0.822 Sum_probs=9.4
Q ss_pred HHHHHHHhhhcC
Q 022301 20 EREVEDLFYKYG 31 (299)
Q Consensus 20 ~~~l~~~F~~~G 31 (299)
..+++.+|.+.|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 457888998876
No 468
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=21.81 E-value=37 Score=21.26 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=8.5
Q ss_pred CCceEEEEecC
Q 022301 44 PPGYAFVEFEE 54 (299)
Q Consensus 44 ~~g~afV~F~~ 54 (299)
.+||+||+-.+
T Consensus 13 ~KGfGFI~~~d 23 (74)
T 2k5n_A 13 DKGFGFIKDEN 23 (74)
T ss_dssp TTTEEEEEESS
T ss_pred CCCeEEEecCC
Confidence 37899998764
No 469
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=21.59 E-value=1.5e+02 Score=25.57 Aligned_cols=56 Identities=21% Similarity=0.335 Sum_probs=32.6
Q ss_pred EEEcCCCCC--CCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCCCCC
Q 022301 9 LYVGNLPGD--IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (299)
Q Consensus 9 l~V~nLp~~--~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~~l~~~~~~ 71 (299)
-+||||..- -....+.++..+||+|..+.+- +.-+|...+++.+..++. -+...+.
T Consensus 18 P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g------~~~~vvv~dp~~i~~il~-~~~~~f~ 75 (507)
T 3pm0_A 18 PLIGNAAAVGQAAHLSFARLARRYGDVFQIRLG------SCPIVVLNGERAIHQALV-QQGSAFA 75 (507)
T ss_dssp ----------CCHHHHHHHHHHHHCSEEEEEET------TEEEEEECSHHHHHHHHT-TTTTTSC
T ss_pred CeeCchhhcCccHHHHHHHHHHHhCCEEEEEEC------CccEEEECCHHHHHHHHH-hCcHhhC
Confidence 356776432 2245577888999999888773 345777888888888875 2333343
No 470
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=21.36 E-value=73 Score=21.01 Aligned_cols=60 Identities=12% Similarity=0.031 Sum_probs=36.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEE---Ee-ecCCCCCceEEEEecC--hHHHHHHHHhcCC
Q 022301 8 TLYVGNLPGDIREREVEDLFYKYGPIAHI---DL-KIPPRPPGYAFVEFEE--ARDAEDAIRGRDG 67 (299)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~i---~~-~~~~~~~g~afV~F~~--~e~A~~A~~~l~~ 67 (299)
.|.|.-....+.+.-|.++...||--.+| .| ...+..-|.-+|++.- .++..+|+..|..
T Consensus 22 lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~ 87 (98)
T 3ced_A 22 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIE 87 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHH
Confidence 44444334456666788888888853333 33 2233445777888874 6677788877754
No 471
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=21.24 E-value=1.1e+02 Score=20.31 Aligned_cols=50 Identities=10% Similarity=0.185 Sum_probs=29.5
Q ss_pred CCCCCCHHHHHHHhhhc--------CCeeEEEe--------ecCCCCC-ceEEEEecChHHHHHHHH
Q 022301 14 LPGDIREREVEDLFYKY--------GPIAHIDL--------KIPPRPP-GYAFVEFEEARDAEDAIR 63 (299)
Q Consensus 14 Lp~~~t~~~l~~~F~~~--------G~v~~i~~--------~~~~~~~-g~afV~F~~~e~A~~A~~ 63 (299)
|.++++++++.++...| |.|..+.- ....... .|.++.|....++.+-+.
T Consensus 10 l~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~~~~i~ele 76 (101)
T 1cqm_A 10 LNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLA 76 (101)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeChHHHHHHH
Confidence 36677888877666554 45655543 1122222 478888877666655554
No 472
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=21.14 E-value=1.3e+02 Score=17.20 Aligned_cols=52 Identities=12% Similarity=0.207 Sum_probs=34.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecChHHHHHHHH
Q 022301 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (299)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~~e~A~~A~~ 63 (299)
++.|.++.-..-...|...+... .|..+.+... .+.+.|.|...++...++.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~---~~~~~v~~~~~~~i~~~i~ 55 (67)
T 2kyz_A 4 VLYVPDISCNHCKMRISKALEEL-GVKNYEVSVE---EKKVVVETENLDSVLKKLE 55 (67)
T ss_dssp EEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETT---TTEEEEECSCHHHHHHHHH
T ss_pred EEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECC---CCEEEEEECCHHHHHHHHH
Confidence 56666665544456688888888 7888888633 4678888876534444555
No 473
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=20.88 E-value=1.3e+02 Score=17.12 Aligned_cols=53 Identities=15% Similarity=0.151 Sum_probs=37.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecC---hHHHHHHHH
Q 022301 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEE---ARDAEDAIR 63 (299)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~---~e~A~~A~~ 63 (299)
++.|.++.-..-...|...+.....|..+.+... .+.+.|.|.. .++...++.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~---~~~~~v~~~~~~~~~~i~~~i~ 58 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYP---KGTAQLAIVPGTSPDALTAAVA 58 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETT---TTEEEEEECTTSCHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEcc---CCEEEEEECCCCCHHHHHHHHH
Confidence 5778888666566778899998888988888643 4577888864 344445555
No 474
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=20.55 E-value=1.3e+02 Score=17.16 Aligned_cols=55 Identities=13% Similarity=0.224 Sum_probs=36.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecC----hHHHHHHHHhc
Q 022301 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEE----ARDAEDAIRGR 65 (299)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~----~e~A~~A~~~l 65 (299)
++.|.++.-..-...|...+.....|..+.+... .+.+.|.|.. .++...++..+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~---~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 6 VINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLA---NSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETT---TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEcc---CCEEEEEECCCcCCHHHHHHHHHHC
Confidence 5677777554445668888888888888888633 4678888863 34455556543
No 475
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=25.69 E-value=22 Score=24.21 Aligned_cols=49 Identities=12% Similarity=0.213 Sum_probs=29.1
Q ss_pred CHHHHHHHHHhcCCeeEEEEEeCCCCC---EEE--EEecChhhHHHHHHhcCCCe
Q 022301 121 SWQDLKDHMRRAGDVCFSQVFRDGSGT---TGI--VDYTNYDDMKHAIKKLDDSE 170 (299)
Q Consensus 121 ~~~~l~~~f~~~G~v~~~~~~~~~~~~---~~f--v~f~~~~~a~~a~~~l~g~~ 170 (299)
.+++|..+..+.+ +..+.+......| |.. =.|.+.++|..|+..|-...
T Consensus 35 ~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 35 NYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 4556666666665 2334444432221 222 26889999999999886544
No 476
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=20.15 E-value=1.3e+02 Score=17.10 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=37.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEecC----hHHHHHHHHh
Q 022301 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEE----ARDAEDAIRG 64 (299)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~~----~e~A~~A~~~ 64 (299)
.+|.|.++.-..-...|...+.....|..+.+... .+.+.|.|.. .++...++..
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~---~~~~~v~~~~~~~~~~~i~~~i~~ 65 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLA---EGTVEVTIDSSVVTLKDIVAVIED 65 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT---TTEEEEEEETTTSCHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEec---CCEEEEEECCCCCCHHHHHHHHHH
Confidence 35778888655455668888988878888888633 4578888863 3444555553
No 477
>3ezj_A General secretion pathway protein GSPD; general secretory pathway, secretin, single chain antibody, transport, immune system, complex; 2.80A {Escherichia coli}
Probab=20.12 E-value=76 Score=24.89 Aligned_cols=65 Identities=12% Similarity=0.235 Sum_probs=40.3
Q ss_pred CCCHHHHHHHhhhcCCeeEEEeecCCCCCceEEEEec---ChHHHHHHH---HhcCCCCC---CCceEEEEEcc
Q 022301 17 DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFE---EARDAEDAI---RGRDGYDF---DGHRLRVELAH 81 (299)
Q Consensus 17 ~~t~~~l~~~F~~~G~v~~i~~~~~~~~~g~afV~F~---~~e~A~~A~---~~l~~~~~---~g~~i~v~~~~ 81 (299)
+....+|.++|..++.+..+.+..++.-+|..-+.|. +.+++..++ -.++|..+ .|..+.|....
T Consensus 12 ~f~~~~i~~vl~~la~~~g~n~vvd~~V~G~vtl~~~~~v~~~~~~~~l~~vL~~~gl~~~~~~g~v~~V~p~~ 85 (241)
T 3ezj_A 12 NFKDTDLKSFIETVGANLNKTIIMGPGVQGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSS 85 (241)
T ss_dssp EEEEEEHHHHHHHHHHHHTCEEEC---CCCEEEEEESSCBCHHHHHHHHHHHHHHTTEEEEEETTTEEEEEEC-
T ss_pred EeCCCCHHHHHHHHHHHhCCeEEECCCCcceEEEEeCCCCCHHHHHHHHHHHHHHCCcEEEEcCCCEEEEEEhH
Confidence 3444567788887888877888666655676666664 455555543 34788543 58888887754
No 478
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=20.00 E-value=70 Score=28.17 Aligned_cols=52 Identities=31% Similarity=0.379 Sum_probs=35.7
Q ss_pred CCCCCCHHHHHHHhh----hcCCeeEEEeecC--CCCCceEEEEecChHHHHHHHHhc
Q 022301 14 LPGDIREREVEDLFY----KYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGR 65 (299)
Q Consensus 14 Lp~~~t~~~l~~~F~----~~G~v~~i~~~~~--~~~~g~afV~F~~~e~A~~A~~~l 65 (299)
+..+.+.-+|..+|- .+|-|..+.+... ......+++.|.+.++|..|+..+
T Consensus 194 ~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 194 LKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp CSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHH
T ss_pred ccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHH
Confidence 444444456666664 5678888888432 233456889999999999988765
Done!