BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022302
(299 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 11/91 (12%)
Query: 199 LANLRYLQVLDLSGNF--NITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEA 256
L NL + L+LSGN N+++ +A L ++K LDL S IT + LA L NL+
Sbjct: 87 LKNLTKITELELSGNPLKNVSA-------IAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 139
Query: 257 LDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
L L N +++ LA LTNLQ L + +NQ
Sbjct: 140 LYLDLNQI--TNISPLAGLTNLQYLSIGNNQ 168
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 227 ANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286
A+L + L + G+TTI+G+ L NL L+L N + L L NLT + L+LS N
Sbjct: 44 ADLDGIATLSAFNTGVTTIEGIQYLNNLIGLELKDNQI--TDLTPLKNLTKITELELSGN 101
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 55/106 (51%), Gaps = 19/106 (17%)
Query: 199 LANLRYLQVLDLSGN----------------FNITSGSLTRL-GLANLTNLKKLDLGSCG 241
L NL L L+LS N N +S +T L LANLT L++LD+ S
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNK 184
Query: 242 ITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
++ I LAKL NLE+L ++ N I S + L LTNL L L+ NQ
Sbjct: 185 VSDISVLAKLTNLESL-IATNNQI-SDITPLGILTNLDELSLNGNQ 228
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 42/77 (54%), Gaps = 10/77 (12%)
Query: 226 LANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSD 285
LANLTNL L L + IT I L L NL L+LS N S + L+ LT+LQ L+ S
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLNFSS 160
Query: 286 NQ--------NLTTLGK 294
NQ NLTTL +
Sbjct: 161 NQVTDLKPLANLTTLER 177
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 51/110 (46%), Gaps = 23/110 (20%)
Query: 197 QGLANLRYLQVLDLSGN-----------FNITS--------GSLTRLGLANLTNLKKLDL 237
+ LANL L+ LD+S N N+ S +T LG+ LTNL +L L
Sbjct: 167 KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSL 224
Query: 238 GSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
+ I LA L NL LDL+ N S+L L+ LT L L L NQ
Sbjct: 225 NGNQLKDIGTLASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLGANQ 272
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 29/157 (18%)
Query: 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYXXXXXXXXXXX 184
F+E +L+L FT ++ + F +L L++LNL + S
Sbjct: 395 FKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTS--------------- 439
Query: 185 XXXXXXEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLT-NLKKLDLGSCGIT 243
+ LA L+ L+ L+L GN + GS+++ L + +L+ L L SC +
Sbjct: 440 ----------NQHLLAGLQDLRHLNLQGN-SFQDGSISKTNLLQMVGSLEILILSSCNLL 488
Query: 244 TI--QGLAKLKNLEALDLSYNYYIHSSLEGLANLTNL 278
+I Q L+N+ LDLS+N S++ L++L L
Sbjct: 489 SIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL 525
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 18/66 (27%)
Query: 231 NLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEG-------LANLTNLQVLDL 283
N++KLDLG+ + L KL+NL+ LDLS HS +E L NL +LQ L+L
Sbjct: 334 NMRKLDLGT------RCLEKLENLQKLDLS-----HSDIEASDCCNLQLKNLRHLQYLNL 382
Query: 284 SDNQNL 289
S N+ L
Sbjct: 383 SYNEPL 388
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 11/91 (12%)
Query: 199 LANLRYLQVLDLSGNF--NITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEA 256
L NL + L+LSGN N+++ +A L ++K LDL S IT + LA L NL+
Sbjct: 81 LKNLTKITELELSGNPLKNVSA-------IAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133
Query: 257 LDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
L L N +++ LA LTNLQ L + + Q
Sbjct: 134 LYLDLNQI--TNISPLAGLTNLQYLSIGNAQ 162
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 211 SGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLE 270
+G N+T ++T+ L +T L G+TTI+G+ L NL L+L N + L
Sbjct: 26 AGKSNVTD-TVTQADLDGITTLSAF---GTGVTTIEGVQYLNNLIGLELKDNQI--TDLA 79
Query: 271 GLANLTNLQVLDLSDN 286
L NLT + L+LS N
Sbjct: 80 PLKNLTKITELELSGN 95
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 198 GLANLRYLQVLDLSGNFNITSGSLTRL-GLANLTNLKKLDLGSCGITTIQGLAKLKNLEA 256
L+ L LQ L S N +T L LANLT L++LD+ S ++ I LAKL NLE+
Sbjct: 146 ALSGLTSLQQLSFSSN------QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES 199
Query: 257 LDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
L ++ N I S + L LTNL L L+ NQ
Sbjct: 200 L-IATNNQI-SDITPLGILTNLDELSLNGNQ 228
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 226 LANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSD 285
LANLTNL L L + IT I L L NL L+LS N S + L+ LT+LQ L S
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFSS 160
Query: 286 NQ--------NLTTLGK 294
NQ NLTTL +
Sbjct: 161 NQVTDLKPLANLTTLER 177
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 51/110 (46%), Gaps = 23/110 (20%)
Query: 197 QGLANLRYLQVLDLSGN-----------FNITS--------GSLTRLGLANLTNLKKLDL 237
+ LANL L+ LD+S N N+ S +T LG+ LTNL +L L
Sbjct: 167 KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSL 224
Query: 238 GSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
+ I LA L NL LDL+ N S+L L+ LT L L L NQ
Sbjct: 225 NGNQLKDIGTLASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLGANQ 272
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 198 GLANLRYLQVLDLSGNFNITSGSLTRL-GLANLTNLKKLDLGSCGITTIQGLAKLKNLEA 256
L+ L LQ L S N +T L LANLT L++LD+ S ++ I LAKL NLE+
Sbjct: 146 ALSGLTSLQQLSFSSN------QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES 199
Query: 257 LDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
L ++ N I S + L LTNL L L+ NQ
Sbjct: 200 L-IATNNQI-SDITPLGILTNLDELSLNGNQ 228
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 226 LANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSD 285
LANLTNL L L + IT I L L NL L+LS N S + L+ LT+LQ L S
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFSS 160
Query: 286 NQ--------NLTTLGK 294
NQ NLTTL +
Sbjct: 161 NQVTDLKPLANLTTLER 177
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 51/110 (46%), Gaps = 23/110 (20%)
Query: 197 QGLANLRYLQVLDLSGN-----------FNITS--------GSLTRLGLANLTNLKKLDL 237
+ LANL L+ LD+S N N+ S +T LG+ LTNL +L L
Sbjct: 167 KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSL 224
Query: 238 GSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
+ I LA L NL LDL+ N S+L L+ LT L L L NQ
Sbjct: 225 NGNQLKDIGTLASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLGANQ 272
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 92/223 (41%), Gaps = 48/223 (21%)
Query: 68 VGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEE 127
+ DD +SDCC+ N + + + LS NE + + F+E
Sbjct: 357 LSHDDIETSDCCNLQLR---NLSHLQSLNLSYNEPLSLKTEA---------------FKE 398
Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYXXXXXXXXXXXXXX 187
+L+L FT + A F +L LK+LNL + + S
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS------------------ 440
Query: 188 XXXEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL-GLANLTNLKKLDLGSCGITTI- 245
++Q L LQ L+L GN + G++ + L L L+ L L C +++I
Sbjct: 441 -------SEQLFDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492
Query: 246 -QGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
LK + +DLS+N SS+E L++L + L+L+ N
Sbjct: 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 226 LANLTNLKKLDLGSCGITTIQ----GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVL 281
L NL NL++LDL I T L L +L++L+LSYN + E L++L
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405
Query: 282 DLS 284
DL+
Sbjct: 406 DLA 408
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 226 LANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSD 285
LANLT L++LD+ S ++ I LAKL NLE+L ++ N I S + L LTNL L L+
Sbjct: 172 LANLTTLERLDISSNKVSDISVLAKLTNLESL-IATNNQI-SDITPLGILTNLDELSLNG 229
Query: 286 NQ 287
NQ
Sbjct: 230 NQ 231
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 226 LANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIH-SSLEGLANLTNL----QV 280
LANLTNL L L + IT I L L NL L+LS N S+L GL +L L QV
Sbjct: 107 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV 166
Query: 281 LDLSDNQNLTTLGK 294
DL NLTTL +
Sbjct: 167 TDLKPLANLTTLER 180
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 51/110 (46%), Gaps = 23/110 (20%)
Query: 197 QGLANLRYLQVLDLSGN-----------FNITS--------GSLTRLGLANLTNLKKLDL 237
+ LANL L+ LD+S N N+ S +T LG+ LTNL +L L
Sbjct: 170 KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSL 227
Query: 238 GSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
+ I LA L NL LDL+ N S+L L+ LT L L L NQ
Sbjct: 228 NGNQLKDIGTLASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLGANQ 275
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 226 LANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSD 285
LANLT L++LD+ S ++ I LAKL NLE+L ++ N I S + L LTNL L L+
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESL-IATNNQI-SDITPLGILTNLDELSLNG 225
Query: 286 NQ 287
NQ
Sbjct: 226 NQ 227
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 226 LANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIH-SSLEGLANLTNL----QV 280
LANLTNL L L + IT I L L NL L+LS N S+L GL +L L QV
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQV 162
Query: 281 LDLSDNQNLTTLGK 294
DL NLTTL +
Sbjct: 163 TDLKPLANLTTLER 176
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 51/110 (46%), Gaps = 23/110 (20%)
Query: 197 QGLANLRYLQVLDLSGN-----------FNITS--------GSLTRLGLANLTNLKKLDL 237
+ LANL L+ LD+S N N+ S +T LG+ LTNL +L L
Sbjct: 166 KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSL 223
Query: 238 GSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
+ I LA L NL LDL+ N S+L L+ LT L L L NQ
Sbjct: 224 NGNQLKDIGTLASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLGANQ 271
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 226 LANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSD 285
LANLT L++LD+ S ++ I LAKL NLE+L ++ N I S + L LTNL L L+
Sbjct: 173 LANLTTLERLDISSNKVSDISVLAKLTNLESL-IATNNQI-SDITPLGILTNLDELSLNG 230
Query: 286 NQ 287
NQ
Sbjct: 231 NQ 232
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 226 LANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIH-SSLEGLANLTNL----QV 280
LANLTNL L L + IT I L L NL L+LS N S+L GL +L L QV
Sbjct: 108 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV 167
Query: 281 LDLSDNQNLTTLGK 294
DL NLTTL +
Sbjct: 168 TDLKPLANLTTLER 181
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 51/110 (46%), Gaps = 23/110 (20%)
Query: 197 QGLANLRYLQVLDLSGN-----------FNITS--------GSLTRLGLANLTNLKKLDL 237
+ LANL L+ LD+S N N+ S +T LG+ LTNL +L L
Sbjct: 171 KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSL 228
Query: 238 GSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
+ I LA L NL LDL+ N S+L L+ LT L L L NQ
Sbjct: 229 NGNQLKDIGTLASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLGANQ 276
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 226 LANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSD 285
LANLT L++LD+ S ++ I LAKL NLE+L ++ N I S + L LTNL L L+
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESL-IATNNQI-SDITPLGILTNLDELSLNG 225
Query: 286 NQ 287
NQ
Sbjct: 226 NQ 227
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 226 LANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIH-SSLEGLANLTNL----QV 280
LANLTNL L L + IT I L L NL L+LS N S+L GL +L L QV
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQV 162
Query: 281 LDLSDNQNLTTLGK 294
DL NLTTL +
Sbjct: 163 TDLKPLANLTTLER 176
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 51/110 (46%), Gaps = 23/110 (20%)
Query: 197 QGLANLRYLQVLDLSGN-----------FNITS--------GSLTRLGLANLTNLKKLDL 237
+ LANL L+ LD+S N N+ S +T LG+ LTNL +L L
Sbjct: 166 KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSL 223
Query: 238 GSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
+ I LA L NL LDL+ N S+L L+ LT L L L NQ
Sbjct: 224 NGNQLKDIGTLASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLGANQ 271
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 47/211 (22%)
Query: 68 VGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEE 127
+ +D +SDCC + ++ LS +T+ +++ G L F +
Sbjct: 354 LSHNDIEASDCC-----------SLQLKNLSHLQTLNLSHNEPLG----LQSQAFKECPQ 398
Query: 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYXXXXXXXXXXXXXX 187
L+ LDL FT ++ N F +L L++LNL F + S
Sbjct: 399 LELLDLA---FTRLHINAPQSPFQNLHFLQVLNLTYCFLDTS------------------ 437
Query: 188 XXXEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLG-LANLTNLKKLDLGSCGITTI- 245
+ LA L L+ L+L GN + G++T+ L + +L+ L L SCG+ +I
Sbjct: 438 -------NQHLLAGLPVLRHLNLKGN-HFQDGTITKTNLLQTVGSLEVLILSSCGLLSID 489
Query: 246 -QGLAKLKNLEALDLSYNYYIHSSLEGLANL 275
Q L + +DLS+N S++ L++L
Sbjct: 490 QQAFHSLGKMSHVDLSHNSLTCDSIDSLSHL 520
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 38/62 (61%), Gaps = 10/62 (16%)
Query: 231 NLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHS---SLEGLANLTNLQVLDLSDNQ 287
N+KKL LG + L KL NL+ LDLS+N S SL+ L NL++LQ L+LS N+
Sbjct: 332 NVKKLHLG------VGCLEKLGNLQTLDLSHNDIEASDCCSLQ-LKNLSHLQTLNLSHNE 384
Query: 288 NL 289
L
Sbjct: 385 PL 386
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 191 EGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAK 250
E + QG+ L L+ L+L+GN IT S L+NL L L +G+ IT I L
Sbjct: 54 EKVASIQGIEYLTNLEYLNLNGN-QITDIS----PLSNLVKLTNLYIGTNKITDISALQN 108
Query: 251 LKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL 296
L NL L L+ + S + LANLT L+L N NL+ L PL
Sbjct: 109 LTNLRELYLNEDNI--SDISPLANLTKXYSLNLGANHNLSDLS-PL 151
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 15/103 (14%)
Query: 199 LANLRYL-----QVLDLSG--------NFNITSGSLTRL-GLANLTNLKKLDLGSCGITT 244
L NL YL Q+ D+S N I + +T + L NLTNL++L L I+
Sbjct: 65 LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISD 124
Query: 245 IQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
I LA L +L+L N+ + S L L+N T L L +++++
Sbjct: 125 ISPLANLTKXYSLNLGANHNL-SDLSPLSNXTGLNYLTVTESK 166
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 229 LTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIH-SSLEGLANLTNL-----QVLD 282
L ++ KL + + +IQG+ L NLE L+L+ N S L L LTNL ++ D
Sbjct: 43 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD 102
Query: 283 LSDNQNLTTL 292
+S QNLT L
Sbjct: 103 ISALQNLTNL 112
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 225 GLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLS 284
+ +LT LK L++GS I+ I L L L +L L+ N + E + LTNL L LS
Sbjct: 260 AVKDLTKLKXLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLS 319
Query: 285 DNQNLTTLGKPL 296
QN T +PL
Sbjct: 320 --QNHITDIRPL 329
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 14/102 (13%)
Query: 199 LANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALD 258
LANL L+L N N++ S L+N T L L + + + +A L +L +L
Sbjct: 128 LANLTKXYSLNLGANHNLSDLS----PLSNXTGLNYLTVTESKVKDVTPIANLTDLYSLS 183
Query: 259 LSYNYYIHSSLEGLANLTNL--------QVLDLSDNQNLTTL 292
L+YN + LA+LT+L Q+ D++ N T L
Sbjct: 184 LNYNQI--EDISPLASLTSLHYFTAYVNQITDITPVANXTRL 223
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 229 LTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIH---SSLEGLANLTNLQVLD 282
L NLK L+LG C I + L L LE L++S N++ S GL++L L V++
Sbjct: 195 LFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 205 LQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYN 262
++ LDLS N IT ++ L NL+ L L S GI TI+ + L +LE LDLSYN
Sbjct: 54 VKSLDLSNN-RITY--ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110
Query: 263 YYIHSSLEGLANLTNLQVLDLSDNQNLTTLGK 294
Y + S L++L L+L N TLG+
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGE 141
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 199 LANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGL-AKLKNLEAL 257
L+ L+ + L LS N NI S L+ + NL+ L LG I I+ L A LE L
Sbjct: 45 LSTLKACKHLALSTN-NIEKIS----SLSGMENLRILSLGRNLIKKIENLDAVADTLEEL 99
Query: 258 DLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
+SYN +SL G+ L NL+VL +S+N+
Sbjct: 100 WISYNQI--ASLSGIEKLVNLRVLYMSNNK 127
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 205 LQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYN 262
++ LDLS N IT ++ L NL+ L L S GI TI+ + L +LE LDLSYN
Sbjct: 28 VKSLDLSNN-RITY--ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 84
Query: 263 YYIHSSLEGLANLTNLQVLDLSDNQNLTTLGK 294
Y + S L++L L+L N TLG+
Sbjct: 85 YLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGE 115
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 199 LANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGL-AKLKNLEAL 257
L+ L+ + L LS N NI S L+ + NL+ L LG I I+ L A LE L
Sbjct: 44 LSTLKACKHLALSTN-NIEKIS----SLSGMENLRILSLGRNLIKKIENLDAVADTLEEL 98
Query: 258 DLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
+SYN +SL G+ L NL+VL +S+N+
Sbjct: 99 WISYNQI--ASLSGIEKLVNLRVLYMSNNK 126
>pdb|1X70|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|1X70|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|2FJP|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2FJP|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2HHA|A Chain A, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2HHA|B Chain B, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2IIT|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIT|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIV|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2IIV|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2OPH|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2OPH|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2P8S|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2P8S|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2QOE|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|2QOE|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|3C43|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C43|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C45|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3C45|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3D4L|A Chain A, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|3D4L|B Chain B, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|2QKY|A Chain A, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|B Chain B, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|C Chain C, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|D Chain D, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|3HAB|A Chain A, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAB|B Chain B, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAC|A Chain A, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
pdb|3HAC|B Chain B, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
Length = 728
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG 293
++D C T +G ++ +EAL Y YYI + +G+ NL + LSD +T L
Sbjct: 350 QIDKKDCTFIT-KGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLS 408
Query: 294 KPLN 297
LN
Sbjct: 409 CELN 412
>pdb|1N1M|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1N1M|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1NU6|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU6|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU8|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1NU8|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1TK3|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TK3|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TKR|A Chain A, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1TKR|B Chain B, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1W1I|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1RWQ|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|1RWQ|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|2BGN|A Chain A, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|B Chain B, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|C Chain C, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|D Chain D, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2AJL|I Chain I, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2AJL|J Chain J, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2BUB|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2BUB|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2OGZ|A Chain A, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OGZ|B Chain B, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OQI|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|C Chain C, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|D Chain D, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OLE|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|2OLE|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|3BJM|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3BJM|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3EIO|A Chain A, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3EIO|B Chain B, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3H0C|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3H0C|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3KWF|A Chain A, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3KWF|B Chain B, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3OC0|A Chain A, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3OC0|B Chain B, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|A Chain A, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|B Chain B, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|4DSA|A Chain A, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSA|B Chain B, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSZ|A Chain A, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DSZ|B Chain B, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DTC|A Chain A, Crystal Structure Of Dpp-iv With Compound C5
pdb|4DTC|B Chain B, Crystal Structure Of Dpp-iv With Compound C5
Length = 728
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG 293
++D C T +G ++ +EAL Y YYI + +G+ NL + LSD +T L
Sbjct: 350 QIDKKDCTFIT-KGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLS 408
Query: 294 KPLN 297
LN
Sbjct: 409 CELN 412
>pdb|2RGU|A Chain A, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
pdb|2RGU|B Chain B, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
Length = 734
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG 293
++D C T +G ++ +EAL Y YYI + +G+ NL + LSD +T L
Sbjct: 350 QIDKKDCTFIT-KGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLS 408
Query: 294 KPLN 297
LN
Sbjct: 409 CELN 412
>pdb|1U8E|A Chain A, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
pdb|1U8E|B Chain B, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
Length = 728
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG 293
++D C T +G ++ +EAL Y YYI + +G+ NL + LSD +T L
Sbjct: 350 QIDKKDCTFIT-KGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLS 408
Query: 294 KPLN 297
LN
Sbjct: 409 CELN 412
>pdb|3Q8W|A Chain A, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
pdb|3Q8W|B Chain B, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
Length = 732
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG 293
++D C T +G ++ +EAL Y YYI + +G+ NL + LSD +T L
Sbjct: 350 QIDKKDCTFIT-KGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLS 408
Query: 294 KPLN 297
LN
Sbjct: 409 CELN 412
>pdb|2G5P|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5P|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5T|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G5T|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G63|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2I03|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2OQV|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2OQV|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2I78|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2OAG|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
Length = 726
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG 293
++D C T +G ++ +EAL Y YYI + +G+ NL + LSD +T L
Sbjct: 350 QIDKKDCTFIT-KGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLS 408
Query: 294 KPLN 297
LN
Sbjct: 409 CELN 412
>pdb|1PFQ|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
pdb|1PFQ|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
Length = 731
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG 293
++D C T +G ++ +EAL Y YYI + +G+ NL + LSD +T L
Sbjct: 353 QIDKKDCTFIT-KGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLS 411
Query: 294 KPLN 297
LN
Sbjct: 412 CELN 415
>pdb|2RIP|A Chain A, Structure Of Dppiv In Complex With An Inhibitor
Length = 729
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG 293
++D C T +G ++ +EAL Y YYI + +G+ NL + LSD +T L
Sbjct: 351 QIDKKDCTFIT-KGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLS 409
Query: 294 KPLN 297
LN
Sbjct: 410 CELN 413
>pdb|3QBJ|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3QBJ|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG 293
++D C T +G ++ +EAL Y YYI + +G+ NL + LSD +T L
Sbjct: 358 QIDKKDCTFIT-KGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLS 416
Query: 294 KPLN 297
LN
Sbjct: 417 CELN 420
>pdb|1R9N|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
Length = 739
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG 293
++D C T +G ++ +EAL Y YYI + +G+ NL + LSD +T L
Sbjct: 361 QIDKKDCTFIT-KGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLS 419
Query: 294 KPLN 297
LN
Sbjct: 420 CELN 423
>pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QT9|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
Length = 766
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG 293
++D C T +G ++ +EAL Y YYI + +G+ NL + LSD +T L
Sbjct: 388 QIDKKDCTFIT-KGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLS 446
Query: 294 KPLN 297
LN
Sbjct: 447 CELN 450
>pdb|2JID|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
pdb|2JID|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
Length = 736
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG 293
++D C T +G ++ +EAL Y YYI + +G+ NL + LSD +T L
Sbjct: 358 QIDKKDCTFIT-KGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLS 416
Query: 294 KPLN 297
LN
Sbjct: 417 CELN 420
>pdb|3CCB|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3G0B|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0C|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0D|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0G|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3O95|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O9V|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3OPM|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|4G1F|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
Length = 740
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG 293
++D C T +G ++ +EAL Y YYI + +G+ NL + LSD +T L
Sbjct: 362 QIDKKDCTFIT-KGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLS 420
Query: 294 KPLN 297
LN
Sbjct: 421 CELN 424
>pdb|2BGR|A Chain A, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
pdb|2BGR|B Chain B, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
Length = 738
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG 293
++D C T +G ++ +EAL Y YYI + +G+ NL + LSD +T L
Sbjct: 360 QIDKKDCTFIT-KGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLS 418
Query: 294 KPLN 297
LN
Sbjct: 419 CELN 422
>pdb|1J2E|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1J2E|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1WCY|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|1WCY|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|3VJM|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJM|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJK|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJK|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJL|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
pdb|3VJL|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
Length = 740
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG 293
++D C T +G ++ +EAL Y YYI + +G+ NL + LSD +T L
Sbjct: 356 QIDKKDCTFIT-KGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLS 414
Query: 294 KPLN 297
LN
Sbjct: 415 CELN 418
>pdb|3NOX|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3NOX|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3SWW|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SWW|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3Q0T|A Chain A, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
pdb|3Q0T|B Chain B, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
Length = 753
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG 293
++D C T +G ++ +EAL Y YYI + +G+ NL + LSD +T L
Sbjct: 352 QIDKKDCTFIT-KGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLS 410
Query: 294 KPLN 297
LN
Sbjct: 411 CELN 414
>pdb|2ONC|A Chain A, Crystal Structure Of Human Dpp-4
pdb|2ONC|B Chain B, Crystal Structure Of Human Dpp-4
pdb|2ONC|C Chain C, Crystal Structure Of Human Dpp-4
pdb|2ONC|D Chain D, Crystal Structure Of Human Dpp-4
Length = 731
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG 293
++D C T +G ++ +EAL Y YYI + +G+ NL + LSD +T L
Sbjct: 353 QIDKKDCTFIT-KGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLS 411
Query: 294 KPLN 297
LN
Sbjct: 412 CELN 415
>pdb|1R9M|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution
Length = 733
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG 293
++D C T +G ++ +EAL Y YYI + +G+ NL + LSD +T L
Sbjct: 355 QIDKKDCTFIT-KGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLS 413
Query: 294 KPLN 297
LN
Sbjct: 414 CELN 417
>pdb|2QJR|A Chain A, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|2QJR|B Chain B, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|3F8S|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3F8S|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG 293
++D C T +G ++ +EAL Y YYI + +G+ NL + LSD +T L
Sbjct: 358 QIDKKDCTFIT-KGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLS 416
Query: 294 KPLN 297
LN
Sbjct: 417 CELN 420
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALD 258
+L +L L L+GN SL + L++L+KL + +++ + LK L+ L+
Sbjct: 74 SLSHLSTLILTGN---PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130
Query: 259 LSYNYYIHSSL-EGLANLTNLQVLDLSDNQ 287
+++N L E +NLTNL+ LDLS N+
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALD 258
+L +L L L+GN SL + L++L+KL + +++ + LK L+ L+
Sbjct: 75 SLSHLSTLILTGN---PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 131
Query: 259 LSYNYYIHSSL-EGLANLTNLQVLDLSDNQ 287
+++N L E +NLTNL+ LDLS N+
Sbjct: 132 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 161
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALD 258
+L +L L L+GN SL + L++L+KL + +++ + LK L+ L+
Sbjct: 76 SLSHLSTLILTGN---PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 132
Query: 259 LSYNYYIHSSL-EGLANLTNLQVLDLSDNQ 287
+++N L E +NLTNL+ LDLS N+
Sbjct: 133 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 162
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALD 258
+L +L L L+GN SL + L++L+KL + +++ + LK L+ L+
Sbjct: 75 SLSHLSTLILTGN---PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 131
Query: 259 LSYNYYIHSSL-EGLANLTNLQVLDLSDNQ 287
+++N L E +NLTNL+ LDLS N+
Sbjct: 132 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 161
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 202 LRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDL 259
L +L L L+GN SL + L++L+KL + +++ + LK L+ L++
Sbjct: 99 LSHLSTLILTGN---PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 155
Query: 260 SYNYYIHSSL-EGLANLTNLQVLDLSDNQ 287
++N L E +NLTNL+ LDLS N+
Sbjct: 156 AHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 202 LRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLA--KLKNLEALDL 259
L L+VL ++GN + L + L NL LDL C + + A L +L+ L++
Sbjct: 468 LSSLEVLKMAGN-SFQENFLPDI-FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525
Query: 260 SYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL 296
S+N + L +LQVLD S N +T+ + L
Sbjct: 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALD 258
+L +L L L+GN SL + L++L+KL + +++ + LK L+ L+
Sbjct: 74 SLSHLSTLILTGN---PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130
Query: 259 LSYNYYIHSSL-EGLANLTNLQVLDLSDNQ 287
+++N L E +NLTNL+ LDLS N+
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 202 LRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDL 259
L +L L L+GN SL + L++L+KL + +++ + LK L+ L++
Sbjct: 75 LSHLSTLILTGN---PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131
Query: 260 SYNYYIHSSL-EGLANLTNLQVLDLSDNQ 287
++N L E +NLTNL+ LDLS N+
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 202 LRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLA--KLKNLEALDL 259
L L+VL ++GN + L + L NL LDL C + + A L +L+ L++
Sbjct: 444 LSSLEVLKMAGN-SFQENFLPDI-FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 260 SYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL 296
S+N + L +LQVLD S N +T+ + L
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALD 258
+L +L L L+GN SL + L++L+KL + +++ + LK L+ L+
Sbjct: 76 SLSHLSTLILTGN---PIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELN 132
Query: 259 LSYNYYIHSSL-EGLANLTNLQVLDLSDNQ 287
+++N L E +NLTNL+ LDLS N+
Sbjct: 133 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 162
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 71/175 (40%), Gaps = 13/175 (7%)
Query: 118 NMSLFHPF----EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY 173
N S PF LQ LD+ GN +G + RA + +LK+LN+ N F I P
Sbjct: 208 NFSTGIPFLGDCSALQHLDISGNKLSGDFS-RA---ISTCTELKLLNISSNQFVGPIPPL 263
Query: 174 XXXXXXXXXXXXXXXXXEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLK 233
E G + L LDLSGN + G +L
Sbjct: 264 PLKSLQYLSLAENKFTGEIPDFLSGACD--TLTGLDLSGN-HFYGAVPPFFGSCSLLESL 320
Query: 234 KLDLGS-CGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLT-NLQVLDLSDN 286
L + G + L K++ L+ LDLS+N + E L NL+ +L LDLS N
Sbjct: 321 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 375
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 76/188 (40%), Gaps = 39/188 (20%)
Query: 103 IKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTG-IYENRAYDSFGSLKQLKMLNL 161
+ FN SG L N+S L LDL N F+G I N + +L++L + N
Sbjct: 347 LSFNEFSGELPESLTNLS-----ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN- 400
Query: 162 GDNFFNDSILPYXXXXXXXXXXXXXXXXXEGSRTKQGLANLRYLQVLDLSGNFNITSGSL 221
N F I P L+N L L LS FN SG++
Sbjct: 401 --NGFTGKIPPT-------------------------LSNCSELVSLHLS--FNYLSGTI 431
Query: 222 TRLGLANLTNLK--KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQ 279
L +L+ L+ KL L Q L +K LE L L +N GL+N TNL
Sbjct: 432 PS-SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 490
Query: 280 VLDLSDNQ 287
+ LS+N+
Sbjct: 491 WISLSNNR 498
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYXXXXXXXXX 182
+P LQ L L N FTG + + + +L L+L N+ + +I
Sbjct: 388 NPKNTLQELYLQNNGFTG----KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 443
Query: 183 XXXXXXXXEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGI 242
EG Q L ++ L+ L L +FN +G + GL+N TNL + L + +
Sbjct: 444 LKLWLNMLEG-EIPQELMYVKTLETLIL--DFNDLTGEIPS-GLSNCTNLNWISLSNNRL 499
Query: 243 T--TIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286
T + + +L+NL L LS N + + L + +L LDL+ N
Sbjct: 500 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 545
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 202 LRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLA--KLKNLEALDL 259
L L+VL ++GN + L + L NL LDL C + + A L +L+ L++
Sbjct: 149 LSSLEVLKMAGN-SFQENFLPDI-FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206
Query: 260 SYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL 296
S+N + L +LQVLD S N +T+ + L
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 71/176 (40%), Gaps = 13/176 (7%)
Query: 118 NMSLFHPF----EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY 173
N S PF LQ LD+ GN +G + RA + +LK+LN+ N F I P
Sbjct: 211 NFSTGIPFLGDCSALQHLDISGNKLSGDFS-RA---ISTCTELKLLNISSNQFVGPIPPL 266
Query: 174 XXXXXXXXXXXXXXXXXEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLK 233
E G + L LDLSGN + G +L
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACD--TLTGLDLSGN-HFYGAVPPFFGSCSLLESL 323
Query: 234 KLDLGS-CGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLT-NLQVLDLSDNQ 287
L + G + L K++ L+ LDLS+N + E L NL+ +L LDLS N
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 76/188 (40%), Gaps = 39/188 (20%)
Query: 103 IKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTG-IYENRAYDSFGSLKQLKMLNL 161
+ FN SG L N+S L LDL N F+G I N + +L++L + N
Sbjct: 350 LSFNEFSGELPESLTNLS-----ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN- 403
Query: 162 GDNFFNDSILPYXXXXXXXXXXXXXXXXXEGSRTKQGLANLRYLQVLDLSGNFNITSGSL 221
N F I P L+N L L LS FN SG++
Sbjct: 404 --NGFTGKIPPT-------------------------LSNCSELVSLHLS--FNYLSGTI 434
Query: 222 TRLGLANLTNLK--KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQ 279
L +L+ L+ KL L Q L +K LE L L +N GL+N TNL
Sbjct: 435 PS-SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493
Query: 280 VLDLSDNQ 287
+ LS+N+
Sbjct: 494 WISLSNNR 501
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYXXXXXXXXX 182
+P LQ L L N FTG + + + +L L+L N+ + +I
Sbjct: 391 NPKNTLQELYLQNNGFTG----KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446
Query: 183 XXXXXXXXEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGI 242
EG Q L ++ L+ L L +FN +G + GL+N TNL + L + +
Sbjct: 447 LKLWLNMLEG-EIPQELMYVKTLETLIL--DFNDLTGEIPS-GLSNCTNLNWISLSNNRL 502
Query: 243 T--TIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286
T + + +L+NL L LS N + + L + +L LDL+ N
Sbjct: 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 44/113 (38%), Gaps = 29/113 (25%)
Query: 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYXXXXXX 179
S+F F +L++L L N I +N +F L L LNL NF
Sbjct: 293 SVFSHFTDLEQLTLAQNEINKIDDN----AFWGLTHLLKLNLSQNFL------------- 335
Query: 180 XXXXXXXXXXXEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNL 232
GS + NL L+VLDLS N G + LGL NL L
Sbjct: 336 ------------GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 229 LTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286
LT+L KL+L + +I L LE LDLSYN+ + L NL+ L L N
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Query: 287 Q 287
Q
Sbjct: 382 Q 382
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.8 bits (68), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 200 ANLRYLQVLD-LSGN---FNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGL-----AK 250
++L+ QV D L N N+T L RL AN T +L G TI L K
Sbjct: 17 SHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 76
Query: 251 LKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286
L L+ L+L +N S + A TNL L L N
Sbjct: 77 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 112
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 221 LTRLGLANLTNLKKLDLGSCGITTIQG----LAKLKNLEALDLSYNYYIHSSLEGLANLT 276
LTR A + +L++L L + + L+NL LDLS N + + + L L
Sbjct: 450 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 509
Query: 277 NLQVLDLSDNQNLTTLGKPLN 297
L++LDL N NL L K N
Sbjct: 510 KLEILDLQHN-NLARLWKHAN 529
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 200 ANLRYLQVLD-LSGN---FNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGL-----AK 250
++L+ QV D L N N+T L RL AN T +L G TI L K
Sbjct: 22 SHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 81
Query: 251 LKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286
L L+ L+L +N S + A TNL L L N
Sbjct: 82 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 117
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 219 GSLTRL------GLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNY---YIHSSL 269
G L RL L NL+ L+LG C + I L L LE L+LS N S
Sbjct: 139 GELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSF 198
Query: 270 EGLANLTNLQVL 281
+GL +L L ++
Sbjct: 199 QGLTSLRKLWLM 210
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 16/90 (17%)
Query: 219 GSLTRL------GLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNY---YIHSSL 269
G L RL L+NL+ L+L C + I L L L+ LDLS N+ S
Sbjct: 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSF 227
Query: 270 EGLANL-------TNLQVLDLSDNQNLTTL 292
+GL +L + +QV++ + NL +L
Sbjct: 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 200 ANLRYLQVLD-LSGN---FNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGL-----AK 250
++L+ QV D L N N+T L RL AN T +L G TI L K
Sbjct: 12 SHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 71
Query: 251 LKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286
L L+ L+L +N S + A TNL L L N
Sbjct: 72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 222 TRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQ 279
T GLA ++++ LDL + ++ LK+L+ L+L+YN + E L NLQ
Sbjct: 259 TFAGLAR-SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317
Query: 280 VLDLSDN 286
VL+LS N
Sbjct: 318 VLNLSYN 324
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 202 LRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSY 261
L +LQVL L+ N+ SL ++LT L+ L L S +T + NLE LD+S
Sbjct: 479 LSHLQVLYLNHNY---LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISR 535
Query: 262 NYYIHSSLEGLANLTNLQVLDLSDNQ 287
N + + + +L+ VLD++ N+
Sbjct: 536 NQLLAPNPDVFVSLS---VLDITHNK 558
>pdb|4A5S|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
pdb|4A5S|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
Length = 740
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG 293
++D C T +G ++ +EAL Y YYI + +G+ NL + L D +T L
Sbjct: 350 QIDKKDCTFIT-KGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLS 408
Query: 294 KPLN 297
LN
Sbjct: 409 CELN 412
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 219 GSLTRL------GLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNY---YIHSSL 269
G L RL L NL+ L+LG C + I L L LE L+LS N S
Sbjct: 139 GELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSF 198
Query: 270 EGLANLTNLQVL 281
+GL +L L ++
Sbjct: 199 QGLTSLRKLWLM 210
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 193 SRTKQGLANLRY----LQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGL 248
S KQ LA+LR ++ LDLSGN ++ LA T L+ L+L S + L
Sbjct: 20 SSLKQALASLRQSAWNVKELDLSGN---PLSQISAADLAPFTKLELLNLSSNVLYETLDL 76
Query: 249 AKLKNLEALDLSYNY 263
L L LDL+ NY
Sbjct: 77 ESLSTLRTLDLNNNY 91
>pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORW|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|2BUA|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUC|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2AJ8|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJB|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJC|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJD|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
Length = 728
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG 293
+ D +C T +G ++ +EAL Y YYI + +G+ NL + L+D +T L
Sbjct: 350 QTDKSNCTFIT-KGAWEVIGIEALTSDYLYYISNEHKGMPGGRNLYRIQLNDYTKVTCLS 408
Query: 294 KPLN 297
LN
Sbjct: 409 CELN 412
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 196 KQGLANLRY----LQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKL 251
KQ LA+LR ++ LDLSGN ++ LA T L+ L+L S + L L
Sbjct: 23 KQALASLRQSAWNVKELDLSGN---PLSQISAADLAPFTKLELLNLSSNVLYETLDLESL 79
Query: 252 KNLEALDLSYNY 263
L LDL+ NY
Sbjct: 80 STLRTLDLNNNY 91
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 230 TNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNL 289
T L +L+L C +T +Q L L LDLS+N L G L L VLD+S N+ L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNR-L 112
Query: 290 TTL 292
T+L
Sbjct: 113 TSL 115
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 230 TNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNL 289
T L +L+L C +T +Q L L LDLS+N L G L L VLD+S N+ L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNR-L 112
Query: 290 TTL 292
T+L
Sbjct: 113 TSL 115
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 226 LANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSD 285
L T L +L+L C +T +Q L L LDLS+N L G L L VLD+S
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSF 109
Query: 286 NQNLTTL 292
N+ LT+L
Sbjct: 110 NR-LTSL 115
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 230 TNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNL 289
T L +L+L C +T +Q L L LDLS+N L G L L VLD+S N+ L
Sbjct: 56 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNR-L 113
Query: 290 TTL 292
T+L
Sbjct: 114 TSL 116
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 226 LANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSD 285
L T L +L+L C +T +Q L L LDLS+N L G L L VLD+S
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSF 109
Query: 286 NQNLTTL 292
N+ LT+L
Sbjct: 110 NR-LTSL 115
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 230 TNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNL 289
T L +L+L C +T +Q L L LDLS+N L G L L VLD+S N+ L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNR-L 112
Query: 290 TTL 292
T+L
Sbjct: 113 TSL 115
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 230 TNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNL 289
T L +L+L C +T +Q L L LDLS+N L G L L VLD+S N+ L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNR-L 112
Query: 290 TTL 292
T+L
Sbjct: 113 TSL 115
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 224 LGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDL 259
+ LA LT L+ L L I+ ++ LA LKNL+ L+L
Sbjct: 169 VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 204
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 202 LRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSY 261
L Y + L LS + SL RL L + LK +D+ L+NL LDLS
Sbjct: 437 LSYNKYLQLSTSSFALVPSLQRLMLRRVA-LKNVDISPSP------FRPLRNLTILDLSN 489
Query: 262 NYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPLN 297
N + + + L L NL++LD N NL L K N
Sbjct: 490 NNIANINEDLLEGLENLEILDFQHN-NLARLWKRAN 524
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
Query: 209 DLSGN---FNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAK-----LKNLEALDLS 260
DL N N+T L RL N T +L + G +I L L L+ L+L
Sbjct: 22 DLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQ 81
Query: 261 YNYYIHSSLEGLANLTNLQVLDLSDN 286
+N S + TNL LDL N
Sbjct: 82 HNELSQISDQTFVFCTNLTELDLMSN 107
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 224 LGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDL 259
+ LA LT L+ L L I+ ++ LA LKNL+ L+L
Sbjct: 172 VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 207
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 224 LGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDL 259
+ LA LT L+ L L I+ ++ LA LKNL+ L+L
Sbjct: 192 VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 227
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 224 LGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDL 259
+ LA LT L+ L L I+ ++ LA LKNL+ L+L
Sbjct: 170 VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 205
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 249 AKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287
+L NL +L LS+N+ S E + NL+ LDLS N
Sbjct: 61 TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 224 LGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDL 259
+ LA LT L+ L L I+ ++ LA LKNL+ L+L
Sbjct: 172 VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 207
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 197 QGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNL 254
QG+ L Y+++ D NIT+ GL +L +L L IT + L L NL
Sbjct: 168 QGMKKLSYIRIADT----NITT---IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL 218
Query: 255 EALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG 293
L LS+N LAN +L+ L L++N+ + G
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 257
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 197 QGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNL 254
QG+ L Y+++ D NIT+ GL +L +L L IT + L L NL
Sbjct: 168 QGMKKLSYIRIADT----NITT---IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL 218
Query: 255 EALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG 293
L LS+N LAN +L+ L L++N+ + G
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 257
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 194 RTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKN 253
R L +L+ L++L + N S+ LG L+ L+ LDL IT GL +LK
Sbjct: 119 RDTDSLIHLKNLEILSIRNN---KLKSIVMLGF--LSKLEVLDLHGNEITNTGGLTRLKK 173
Query: 254 LEALDLS 260
+ +DL+
Sbjct: 174 VNWIDLT 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,741,784
Number of Sequences: 62578
Number of extensions: 284004
Number of successful extensions: 920
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 655
Number of HSP's gapped (non-prelim): 256
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)