Query 022302
Match_columns 299
No_of_seqs 345 out of 3543
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 02:30:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 9.4E-30 2E-34 256.3 20.5 232 37-296 27-280 (968)
2 PLN00113 leucine-rich repeat r 99.9 4E-21 8.8E-26 193.9 13.4 166 120-293 158-325 (968)
3 KOG0617 Ras suppressor protein 99.7 1.9E-20 4.1E-25 145.3 -6.0 164 120-296 27-192 (264)
4 KOG4194 Membrane glycoprotein 99.7 3.2E-19 7E-24 161.1 0.4 173 116-296 259-436 (873)
5 KOG4194 Membrane glycoprotein 99.7 2.1E-17 4.7E-22 149.5 6.4 166 118-291 165-332 (873)
6 PLN03150 hypothetical protein; 99.7 1.3E-15 2.8E-20 146.1 14.0 151 33-213 366-525 (623)
7 KOG0617 Ras suppressor protein 99.6 7E-18 1.5E-22 131.1 -6.2 181 91-294 32-217 (264)
8 KOG4237 Extracellular matrix p 99.6 4.8E-16 1E-20 134.9 1.1 179 114-296 79-342 (498)
9 KOG0444 Cytoskeletal regulator 99.6 1.8E-16 3.9E-21 144.7 -2.8 168 118-296 142-312 (1255)
10 KOG0444 Cytoskeletal regulator 99.6 3.8E-16 8.3E-21 142.6 -0.8 162 125-296 125-287 (1255)
11 cd00116 LRR_RI Leucine-rich re 99.5 2.8E-14 6E-19 126.3 5.7 187 91-291 80-293 (319)
12 PLN03210 Resistant to P. syrin 99.5 1.1E-12 2.3E-17 134.3 15.4 163 121-296 629-822 (1153)
13 cd00116 LRR_RI Leucine-rich re 99.4 1.6E-13 3.5E-18 121.4 7.3 166 120-289 75-263 (319)
14 PRK15387 E3 ubiquitin-protein 99.4 2.6E-13 5.7E-18 131.0 9.2 83 204-296 383-465 (788)
15 KOG0472 Leucine-rich repeat pr 99.4 1.6E-15 3.5E-20 132.0 -5.8 157 119-289 153-310 (565)
16 PRK15370 E3 ubiquitin-protein 99.4 1E-11 2.2E-16 120.5 17.9 42 30-79 54-95 (754)
17 KOG0472 Leucine-rich repeat pr 99.4 4.6E-15 9.9E-20 129.2 -7.4 162 121-296 109-294 (565)
18 KOG0618 Serine/threonine phosp 99.4 1.4E-13 2.9E-18 130.8 0.7 163 120-287 304-487 (1081)
19 PLN03210 Resistant to P. syrin 99.4 1.3E-11 2.8E-16 126.5 15.0 163 122-294 653-887 (1153)
20 KOG4237 Extracellular matrix p 99.3 1.8E-13 3.9E-18 119.1 0.7 109 127-243 68-177 (498)
21 PRK15370 E3 ubiquitin-protein 99.3 2.5E-11 5.4E-16 117.8 12.8 146 126-294 220-384 (754)
22 PLN03150 hypothetical protein; 99.3 1.5E-11 3.2E-16 118.3 10.8 107 127-241 419-526 (623)
23 PRK15387 E3 ubiquitin-protein 99.3 3.8E-11 8.3E-16 116.2 12.1 38 252-294 382-419 (788)
24 PF14580 LRR_9: Leucine-rich r 99.3 6.5E-12 1.4E-16 100.6 5.3 127 122-259 15-147 (175)
25 KOG0618 Serine/threonine phosp 99.2 3.6E-13 7.9E-18 128.0 -3.0 164 120-290 258-466 (1081)
26 PF14580 LRR_9: Leucine-rich r 99.2 2.8E-11 6E-16 97.0 6.2 128 93-239 20-149 (175)
27 COG4886 Leucine-rich repeat (L 99.2 4.3E-11 9.2E-16 109.3 7.1 156 127-296 141-297 (394)
28 KOG3207 Beta-tubulin folding c 99.2 1.1E-11 2.4E-16 109.3 2.5 164 121-289 141-314 (505)
29 KOG1909 Ran GTPase-activating 99.2 2.2E-11 4.7E-16 104.7 3.6 169 121-289 87-283 (382)
30 KOG1259 Nischarin, modulator o 99.1 1.7E-11 3.7E-16 103.6 0.1 129 154-290 284-413 (490)
31 KOG1259 Nischarin, modulator o 99.1 1.7E-11 3.6E-16 103.7 -0.9 130 123-266 281-413 (490)
32 KOG0532 Leucine-rich repeat (L 99.0 4.2E-12 9E-17 115.3 -5.5 153 123-290 95-248 (722)
33 KOG3207 Beta-tubulin folding c 99.0 1.5E-10 3.2E-15 102.3 1.7 185 92-290 146-340 (505)
34 COG4886 Leucine-rich repeat (L 99.0 4.7E-10 1E-14 102.5 5.0 157 121-290 111-269 (394)
35 PF13855 LRR_8: Leucine rich r 98.9 7.6E-10 1.6E-14 73.1 2.9 59 127-189 2-60 (61)
36 KOG0532 Leucine-rich repeat (L 98.9 2E-11 4.3E-16 110.9 -6.4 157 124-296 73-230 (722)
37 KOG1909 Ran GTPase-activating 98.9 9.9E-10 2.1E-14 94.6 2.8 189 92-288 92-310 (382)
38 PF13855 LRR_8: Leucine rich r 98.9 1.6E-09 3.5E-14 71.5 2.8 59 230-288 1-61 (61)
39 PF08263 LRRNT_2: Leucine rich 98.8 9.3E-09 2E-13 62.6 4.4 42 37-88 1-43 (43)
40 KOG1859 Leucine-rich repeat pr 98.8 1.7E-10 3.6E-15 107.8 -5.5 127 155-289 165-292 (1096)
41 KOG2120 SCF ubiquitin ligase, 98.7 7.6E-10 1.6E-14 93.6 -2.9 160 121-286 205-373 (419)
42 KOG0531 Protein phosphatase 1, 98.6 5.3E-09 1.2E-13 96.2 0.3 155 122-290 91-269 (414)
43 KOG0531 Protein phosphatase 1, 98.6 8.1E-09 1.7E-13 95.0 -0.2 129 123-265 69-199 (414)
44 COG5238 RNA1 Ran GTPase-activa 98.6 3.5E-08 7.5E-13 82.7 3.0 174 119-293 85-289 (388)
45 KOG2982 Uncharacterized conser 98.5 7.2E-08 1.6E-12 81.8 3.9 167 124-292 69-265 (418)
46 KOG4658 Apoptotic ATPase [Sign 98.5 1E-07 2.2E-12 94.4 3.5 135 150-290 567-731 (889)
47 KOG2120 SCF ubiquitin ligase, 98.4 1E-08 2.2E-13 86.9 -3.2 158 126-288 185-350 (419)
48 KOG1859 Leucine-rich repeat pr 98.4 2.5E-09 5.4E-14 100.1 -7.5 125 127-265 165-292 (1096)
49 COG5238 RNA1 Ran GTPase-activa 98.2 4.6E-06 1E-10 70.2 7.2 189 92-289 30-255 (388)
50 KOG4658 Apoptotic ATPase [Sign 98.2 1.4E-06 2.9E-11 86.6 4.3 114 120-240 565-678 (889)
51 KOG1644 U2-associated snRNP A' 98.2 3E-06 6.4E-11 68.3 5.3 102 155-261 43-149 (233)
52 PF12799 LRR_4: Leucine Rich r 98.1 2.1E-06 4.7E-11 52.3 3.1 36 253-289 2-37 (44)
53 KOG2982 Uncharacterized conser 98.1 1.6E-06 3.4E-11 73.9 2.8 177 92-284 71-287 (418)
54 KOG4579 Leucine-rich repeat (L 98.1 5.9E-07 1.3E-11 68.0 -0.5 135 128-270 29-164 (177)
55 PF12799 LRR_4: Leucine Rich r 98.1 5.6E-06 1.2E-10 50.5 3.6 36 230-265 1-37 (44)
56 PRK15386 type III secretion pr 98.0 3.7E-05 8E-10 69.4 9.5 54 125-188 51-104 (426)
57 KOG4579 Leucine-rich repeat (L 98.0 5.4E-07 1.2E-11 68.2 -2.1 135 154-295 27-165 (177)
58 KOG1644 U2-associated snRNP A' 98.0 1E-05 2.2E-10 65.3 5.0 108 127-240 43-150 (233)
59 KOG3665 ZYG-1-like serine/thre 97.9 9.5E-06 2.1E-10 78.7 4.7 57 153-212 147-204 (699)
60 KOG3665 ZYG-1-like serine/thre 97.8 1.5E-05 3.3E-10 77.3 3.3 134 154-292 122-266 (699)
61 KOG2739 Leucine-rich acidic nu 97.7 1.6E-05 3.4E-10 66.6 1.4 62 150-213 61-126 (260)
62 KOG2739 Leucine-rich acidic nu 97.6 3.5E-05 7.7E-10 64.5 2.2 87 121-211 60-151 (260)
63 PRK15386 type III secretion pr 97.4 0.0011 2.4E-08 60.1 9.4 119 149-286 47-187 (426)
64 KOG2123 Uncharacterized conser 97.3 2.1E-05 4.6E-10 66.5 -2.8 102 125-236 18-123 (388)
65 PF13306 LRR_5: Leucine rich r 97.2 0.0011 2.4E-08 50.2 6.5 86 120-213 6-91 (129)
66 PF13306 LRR_5: Leucine rich r 97.0 0.0023 5.1E-08 48.3 6.4 120 149-278 7-128 (129)
67 KOG2123 Uncharacterized conser 96.9 4.7E-05 1E-09 64.5 -4.4 98 177-282 18-123 (388)
68 KOG1947 Leucine rich repeat pr 96.7 0.0005 1.1E-08 64.2 1.0 114 125-241 187-306 (482)
69 KOG4308 LRR-containing protein 96.2 0.00012 2.5E-09 68.2 -6.8 166 122-289 111-303 (478)
70 PF00560 LRR_1: Leucine Rich R 96.0 0.0033 7.2E-08 31.9 1.0 19 254-273 2-20 (22)
71 KOG4308 LRR-containing protein 95.8 0.00023 5E-09 66.3 -6.5 166 126-291 87-277 (478)
72 KOG4341 F-box protein containi 95.7 0.005 1.1E-07 55.2 1.8 136 151-287 291-437 (483)
73 PF00560 LRR_1: Leucine Rich R 95.5 0.0046 1E-07 31.4 0.5 12 180-191 2-13 (22)
74 KOG1947 Leucine rich repeat pr 93.6 0.078 1.7E-06 49.4 4.1 157 121-278 209-389 (482)
75 PF13504 LRR_7: Leucine rich r 93.5 0.055 1.2E-06 25.5 1.5 11 232-242 3-13 (17)
76 KOG4341 F-box protein containi 92.2 0.12 2.6E-06 46.6 2.9 158 124-283 292-459 (483)
77 KOG3864 Uncharacterized conser 92.1 0.047 1E-06 44.5 0.2 33 128-164 103-135 (221)
78 PF13516 LRR_6: Leucine Rich r 91.4 0.055 1.2E-06 27.9 -0.1 12 155-166 3-14 (24)
79 smart00370 LRR Leucine-rich re 91.3 0.21 4.6E-06 26.1 2.2 14 178-191 2-15 (26)
80 smart00369 LRR_TYP Leucine-ric 91.3 0.21 4.6E-06 26.1 2.2 14 178-191 2-15 (26)
81 KOG0473 Leucine-rich repeat pr 90.7 0.0052 1.1E-07 51.1 -6.6 85 121-213 37-121 (326)
82 KOG3864 Uncharacterized conser 90.1 0.098 2.1E-06 42.7 0.3 82 156-239 103-185 (221)
83 smart00370 LRR Leucine-rich re 90.0 0.38 8.2E-06 25.1 2.5 16 154-169 2-17 (26)
84 smart00369 LRR_TYP Leucine-ric 90.0 0.38 8.2E-06 25.1 2.5 16 154-169 2-17 (26)
85 KOG0473 Leucine-rich repeat pr 85.9 0.016 3.5E-07 48.2 -6.7 89 171-265 35-124 (326)
86 smart00368 LRR_RI Leucine rich 80.1 1.9 4E-05 23.1 2.1 14 127-140 3-16 (28)
87 smart00365 LRR_SD22 Leucine-ri 78.4 2.1 4.5E-05 22.6 1.9 14 276-289 2-15 (26)
88 KOG3763 mRNA export factor TAP 77.5 1.1 2.4E-05 42.1 1.1 66 200-266 215-284 (585)
89 smart00364 LRR_BAC Leucine-ric 77.0 1.7 3.8E-05 22.9 1.3 13 253-265 3-15 (26)
90 KOG3763 mRNA export factor TAP 73.4 2.9 6.3E-05 39.4 2.7 59 152-213 216-280 (585)
91 smart00367 LRR_CC Leucine-rich 48.5 14 0.00031 19.0 1.5 13 275-287 1-13 (26)
92 KOG4242 Predicted myosin-I-bin 35.9 40 0.00088 31.5 3.3 108 152-264 163-280 (553)
93 TIGR00864 PCC polycystin catio 30.6 39 0.00085 38.5 2.7 30 133-166 2-31 (2740)
94 TIGR00864 PCC polycystin catio 25.0 54 0.0012 37.5 2.6 32 160-191 1-32 (2740)
95 PF12273 RCR: Chitin synthesis 20.7 75 0.0016 24.0 2.0 13 11-23 1-13 (130)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=9.4e-30 Score=256.30 Aligned_cols=232 Identities=28% Similarity=0.422 Sum_probs=155.4
Q ss_pred hHHHHHHHHHhhhhccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEecCCCCcEEEeeeCc-cccccccCCCCccc
Q 022302 37 LETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNE-TIKFNYSSGSGSAL 115 (299)
Q Consensus 37 ~~~~~~aL~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~C~~~~~~v~~l~l~~-~l~~~~~~~~~~~~ 115 (299)
.+.|+.||++||+++.++. +.+.+|+. ..+|| .|.||+|+. .++|+.|++++ ++.+..
T Consensus 27 ~~~~~~~l~~~~~~~~~~~------~~~~~w~~-----~~~~c-~w~gv~c~~-~~~v~~L~L~~~~i~~~~-------- 85 (968)
T PLN00113 27 HAEELELLLSFKSSINDPL------KYLSNWNS-----SADVC-LWQGITCNN-SSRVVSIDLSGKNISGKI-------- 85 (968)
T ss_pred CHHHHHHHHHHHHhCCCCc------ccCCCCCC-----CCCCC-cCcceecCC-CCcEEEEEecCCCccccC--------
Confidence 5589999999999997653 46789976 56889 999999985 57999999998 666532
Q ss_pred cccccccCCCCCccEEeCCCCCCCCcchhhhHH-------------------hhcCCCCCCEEECCCCCCCccchHhhcc
Q 022302 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYD-------------------SFGSLKQLKMLNLGDNFFNDSILPYLNT 176 (299)
Q Consensus 116 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-------------------~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 176 (299)
+..+..+++|+.|++++|.+.+.+|..... ....+++|++|++++|.+++.+|..++.
T Consensus 86 ---~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~ 162 (968)
T PLN00113 86 ---SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGS 162 (968)
T ss_pred ---ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhc
Confidence 223444555555555555555444431000 0123555556666666665566666666
Q ss_pred CCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCC
Q 022302 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNL 254 (299)
Q Consensus 177 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L 254 (299)
+++|++|++++|.+.+.+|. .+.++++|++|++++| .+.+.+| ..+..+++|++|++++|++++.. .+..+++|
T Consensus 163 l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n--~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 238 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASN--QLVGQIP-RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238 (968)
T ss_pred CCCCCEEECccCcccccCCh-hhhhCcCCCeeeccCC--CCcCcCC-hHHcCcCCccEEECcCCccCCcCChhHhcCCCC
Confidence 67777777777766665554 5666777777777776 6666666 56667777777777777766533 26677777
Q ss_pred CEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCCc
Q 022302 255 EALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL 296 (299)
Q Consensus 255 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~~ 296 (299)
++|++++|.+++.+|..++++++|++|++++|++.|.+|..+
T Consensus 239 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 280 (968)
T PLN00113 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI 280 (968)
T ss_pred CEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH
Confidence 777777777777777777777777777777777777776543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=4e-21 Score=193.85 Aligned_cols=166 Identities=30% Similarity=0.331 Sum_probs=94.2
Q ss_pred cccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhh
Q 022302 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL 199 (299)
Q Consensus 120 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 199 (299)
..++++++|++|++++|.+.+..|. .+.++++|++|++++|.+.+.+|..++++++|++|++++|++.+.+|. .+
T Consensus 158 ~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l 232 (968)
T PLN00113 158 NDIGSFSSLKVLDLGGNVLVGKIPN----SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY-EI 232 (968)
T ss_pred hHHhcCCCCCEEECccCcccccCCh----hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh-hH
Confidence 3456666667777766666666665 566666666666666666666666666666666666666666655554 45
Q ss_pred cCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCCC
Q 022302 200 ANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLTN 277 (299)
Q Consensus 200 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 277 (299)
..+++|++|++++| ...+.+| ..+..+++|++|++++|++++.. .+..+++|++|++++|.+.+.+|+.+.++++
T Consensus 233 ~~l~~L~~L~L~~n--~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 309 (968)
T PLN00113 233 GGLTSLNHLDLVYN--NLTGPIP-SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN 309 (968)
T ss_pred hcCCCCCEEECcCc--eeccccC-hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCC
Confidence 66666666666666 5555555 45555555555555555554322 2444444555555555544444444444444
Q ss_pred CCEEecCCCCCCCccC
Q 022302 278 LQVLDLSDNQNLTTLG 293 (299)
Q Consensus 278 L~~L~l~~N~l~g~ip 293 (299)
|++|++++|.+.+.+|
T Consensus 310 L~~L~l~~n~~~~~~~ 325 (968)
T PLN00113 310 LEILHLFSNNFTGKIP 325 (968)
T ss_pred CcEEECCCCccCCcCC
Confidence 4444444444444444
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.74 E-value=1.9e-20 Score=145.29 Aligned_cols=164 Identities=27% Similarity=0.363 Sum_probs=138.4
Q ss_pred cccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhh
Q 022302 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL 199 (299)
Q Consensus 120 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 199 (299)
+.+-.+.+++.|.+++|+++...| .+..+.+|+.|++++|++. .+|.+++.+++|+.|+++-|++. .+|. .|
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vpp-----nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lpr-gf 98 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPP-----NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPR-GF 98 (264)
T ss_pred ccccchhhhhhhhcccCceeecCC-----cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcc-cc
Confidence 345567788889999999998877 6888999999999999997 57888999999999999999987 4665 89
Q ss_pred cCCCCCCEEECCCCcCCCCC-ccchhhhccCCCCcEEECCCCCCCCcc-cccCCCCCCEEeCCCCccCccCcccccCCCC
Q 022302 200 ANLRYLQVLDLSGNFNITSG-SLTRLGLANLTNLKKLDLGSCGITTIQ-GLAKLKNLEALDLSYNYYIHSSLEGLANLTN 277 (299)
Q Consensus 200 ~~l~~L~~L~Ls~n~~~~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 277 (299)
+.++.|+.||+.+| .+.. .+| ..|..+..|+.|.+++|.+.-.+ .++++++|+.|.+.+|.+- .+|..++.++.
T Consensus 99 gs~p~levldltyn--nl~e~~lp-gnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~ 174 (264)
T KOG0617|consen 99 GSFPALEVLDLTYN--NLNENSLP-GNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTR 174 (264)
T ss_pred CCCchhhhhhcccc--ccccccCC-cchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHH
Confidence 99999999999998 5443 455 77788889999999999988765 4899999999999999888 78999999999
Q ss_pred CCEEecCCCCCCCccCCCc
Q 022302 278 LQVLDLSDNQNLTTLGKPL 296 (299)
Q Consensus 278 L~~L~l~~N~l~g~ip~~~ 296 (299)
|++|.+++|+++ .+|+++
T Consensus 175 lrelhiqgnrl~-vlppel 192 (264)
T KOG0617|consen 175 LRELHIQGNRLT-VLPPEL 192 (264)
T ss_pred HHHHhcccceee-ecChhh
Confidence 999999999997 566654
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.73 E-value=3.2e-19 Score=161.09 Aligned_cols=173 Identities=25% Similarity=0.274 Sum_probs=149.1
Q ss_pred cccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcch
Q 022302 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRT 195 (299)
Q Consensus 116 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 195 (299)
.+....|..+.++++|+|..|++...-.. .+-+++.|+.|++|+|.+.-.-+..+..+++|++|+|++|+++ .++
T Consensus 259 kL~DG~Fy~l~kme~l~L~~N~l~~vn~g----~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~ 333 (873)
T KOG4194|consen 259 KLDDGAFYGLEKMEHLNLETNRLQAVNEG----WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLD 333 (873)
T ss_pred cccCcceeeecccceeecccchhhhhhcc----cccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCC
Confidence 34556778888999999999998877665 7788999999999999998888888999999999999999998 477
Q ss_pred hhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc-----cccCCCCCCEEeCCCCccCccCcc
Q 022302 196 KQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ-----GLAKLKNLEALDLSYNYYIHSSLE 270 (299)
Q Consensus 196 ~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----~l~~l~~L~~L~L~~N~l~~~~p~ 270 (299)
+..|..+..|++|+|++| ...- +....|..+++|+.|||.+|.++..+ ++..+++|+.|+|.+|++......
T Consensus 334 ~~sf~~L~~Le~LnLs~N--si~~-l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~kr 410 (873)
T KOG4194|consen 334 EGSFRVLSQLEELNLSHN--SIDH-LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKR 410 (873)
T ss_pred hhHHHHHHHhhhhccccc--chHH-HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchh
Confidence 778999999999999999 5443 33367889999999999999988754 378899999999999999976678
Q ss_pred cccCCCCCCEEecCCCCCCCccCCCc
Q 022302 271 GLANLTNLQVLDLSDNQNLTTLGKPL 296 (299)
Q Consensus 271 ~l~~l~~L~~L~l~~N~l~g~ip~~~ 296 (299)
+|..+..|++|||.+|.|...-|++|
T Consensus 411 Afsgl~~LE~LdL~~NaiaSIq~nAF 436 (873)
T KOG4194|consen 411 AFSGLEALEHLDLGDNAIASIQPNAF 436 (873)
T ss_pred hhccCcccceecCCCCcceeeccccc
Confidence 99999999999999999987667766
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.69 E-value=2.1e-17 Score=149.45 Aligned_cols=166 Identities=27% Similarity=0.271 Sum_probs=116.0
Q ss_pred cccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhh
Q 022302 118 NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQ 197 (299)
Q Consensus 118 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 197 (299)
+...|..-.++++|+|++|.++..... .|..+.+|..|.|+.|+++...+..|.++++|+.|+|.+|++.- +...
T Consensus 165 ~~~sfp~~~ni~~L~La~N~It~l~~~----~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri-ve~l 239 (873)
T KOG4194|consen 165 PKPSFPAKVNIKKLNLASNRITTLETG----HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI-VEGL 239 (873)
T ss_pred cCCCCCCCCCceEEeeccccccccccc----cccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee-ehhh
Confidence 334444455666677776666666554 56666667777777777765555566667777777777776652 2223
Q ss_pred hhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCC
Q 022302 198 GLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANL 275 (299)
Q Consensus 198 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 275 (299)
.|..+++|+.|.+..| ...... ...|..+.++++|+|..|+++... ++.+++.|++|+|++|.|....++.+..+
T Consensus 240 tFqgL~Sl~nlklqrN--~I~kL~-DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRN--DISKLD-DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhcCchhhhhhhhhhc--Cccccc-Ccceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 5666666666666666 333222 256777888888888888887664 47788899999999999988888889999
Q ss_pred CCCCEEecCCCCCCCc
Q 022302 276 TNLQVLDLSDNQNLTT 291 (299)
Q Consensus 276 ~~L~~L~l~~N~l~g~ 291 (299)
++|+.|+|++|+++.-
T Consensus 317 qkL~~LdLs~N~i~~l 332 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRL 332 (873)
T ss_pred ccceeEeccccccccC
Confidence 9999999999998753
No 6
>PLN03150 hypothetical protein; Provisional
Probab=99.66 E-value=1.3e-15 Score=146.08 Aligned_cols=151 Identities=29% Similarity=0.383 Sum_probs=105.9
Q ss_pred cccchHHHHHHHHHhhhhccCccCCCCCCCCCCCCCCCCCCCCCCCC---CCCCceEecCC--C--CcEEEeeeCc-ccc
Q 022302 33 YKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCC---DDWEGVKCNAT--T--RRVMQLSLNE-TIK 104 (299)
Q Consensus 33 ~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c---~~w~gv~C~~~--~--~~v~~l~l~~-~l~ 104 (299)
...+.+.|..||+++|+++..+. ..+|.+ .+|| ..|.||.|... . .+|+.|+|++ .+.
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~~~--------~~~W~g------~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~ 431 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGLPL--------RFGWNG------DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLR 431 (623)
T ss_pred ccccCchHHHHHHHHHHhcCCcc--------cCCCCC------CCCCCcccccccceeeccCCCCceEEEEEECCCCCcc
Confidence 34567789999999999985541 247976 2231 26999999531 1 2477777777 555
Q ss_pred ccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEe
Q 022302 105 FNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLI 184 (299)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 184 (299)
|. .+..+.++++|+.|+|++|.+.|.+|. .+..+++|+.|+|++|+++|.+|..++++++|++|+
T Consensus 432 g~-----------ip~~i~~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 432 GF-----------IPNDISKLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred cc-----------CCHHHhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 52 233566777778888888877777776 677777888888888887777777777777888888
Q ss_pred CCCCcCCCcchhhhhcC-CCCCCEEECCCC
Q 022302 185 LSDNSIEGSRTKQGLAN-LRYLQVLDLSGN 213 (299)
Q Consensus 185 L~~n~l~~~~p~~~~~~-l~~L~~L~Ls~n 213 (299)
|++|+++|.+|. .+.. ..++..+++.+|
T Consensus 497 Ls~N~l~g~iP~-~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 497 LNGNSLSGRVPA-ALGGRLLHRASFNFTDN 525 (623)
T ss_pred CcCCcccccCCh-HHhhccccCceEEecCC
Confidence 888877777776 4443 345667777777
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=7e-18 Score=131.09 Aligned_cols=181 Identities=23% Similarity=0.308 Sum_probs=147.1
Q ss_pred CCcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCcc
Q 022302 91 TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS 169 (299)
Q Consensus 91 ~~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 169 (299)
..+++.+.++. +++. .+..+..+.+|+.|++.+|++....+ +++.+++|++|+++-|++. .
T Consensus 32 ~s~ITrLtLSHNKl~~------------vppnia~l~nlevln~~nnqie~lp~-----~issl~klr~lnvgmnrl~-~ 93 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTV------------VPPNIAELKNLEVLNLSNNQIEELPT-----SISSLPKLRILNVGMNRLN-I 93 (264)
T ss_pred hhhhhhhhcccCceee------------cCCcHHHhhhhhhhhcccchhhhcCh-----hhhhchhhhheecchhhhh-c
Confidence 35788888888 5543 24467889999999999999998765 7999999999999999997 6
Q ss_pred chHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc-cc
Q 022302 170 ILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ-GL 248 (299)
Q Consensus 170 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l 248 (299)
.|..|+.++.|++|||..|++.....+..|..+..|+.|+++.| .+. .+| ..++.+++|+.|.+.+|.+-..+ .+
T Consensus 94 lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn--dfe-~lp-~dvg~lt~lqil~lrdndll~lpkei 169 (264)
T KOG0617|consen 94 LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN--DFE-ILP-PDVGKLTNLQILSLRDNDLLSLPKEI 169 (264)
T ss_pred CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC--Ccc-cCC-hhhhhhcceeEEeeccCchhhCcHHH
Confidence 89999999999999999999875443347888999999999999 654 456 68899999999999999977765 59
Q ss_pred cCCCCCCEEeCCCCccCccCcccccCCC---CCCEEecCCCCCCCccCC
Q 022302 249 AKLKNLEALDLSYNYYIHSSLEGLANLT---NLQVLDLSDNQNLTTLGK 294 (299)
Q Consensus 249 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~---~L~~L~l~~N~l~g~ip~ 294 (299)
+.++.|++|++.+|.++ .+|+.++++. +=+...+..|+....|.+
T Consensus 170 g~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 170 GDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred HHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence 99999999999999999 7777777643 223455666766555543
No 8
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.57 E-value=4.8e-16 Score=134.88 Aligned_cols=179 Identities=29% Similarity=0.281 Sum_probs=118.3
Q ss_pred cccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCC-CCCCccchHhhccCCCCcEEeCCCCcCCC
Q 022302 114 ALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGD-NFFNDSILPYLNTLTSLTTLILSDNSIEG 192 (299)
Q Consensus 114 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 192 (299)
+..+++..|+.+++|++|||++|.|+.+-|+ +|.+++.|..|-+.+ |+++......|+.+..|+-|.+.-|++.-
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~----AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~C 154 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPD----AFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINC 154 (498)
T ss_pred cccCChhhccchhhhceecccccchhhcChH----hhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcc
Confidence 3347788999999999999999999999888 888888876665544 77775444455555444444444444431
Q ss_pred -----------------------cchhhhhcCCCCCCEEECCCCcC------------------CCC-------------
Q 022302 193 -----------------------SRTKQGLANLRYLQVLDLSGNFN------------------ITS------------- 218 (299)
Q Consensus 193 -----------------------~~p~~~~~~l~~L~~L~Ls~n~~------------------~~~------------- 218 (299)
.++...|..+..++.+.+..|.. .+.
T Consensus 155 ir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~ 234 (498)
T KOG4237|consen 155 IRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYK 234 (498)
T ss_pred hhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHH
Confidence 23322444445555555544410 000
Q ss_pred ----------------------------CccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccC
Q 022302 219 ----------------------------GSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSS 268 (299)
Q Consensus 219 ----------------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~ 268 (299)
+.-|...|..+++|+.|++++|+++.+. +|.....+++|.|..|++...-
T Consensus 235 Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~ 314 (498)
T KOG4237|consen 235 RINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVS 314 (498)
T ss_pred HhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHH
Confidence 0011145777889999999999998875 3777777888888888777655
Q ss_pred cccccCCCCCCEEecCCCCCCCccCCCc
Q 022302 269 LEGLANLTNLQVLDLSDNQNLTTLGKPL 296 (299)
Q Consensus 269 p~~l~~l~~L~~L~l~~N~l~g~ip~~~ 296 (299)
...|.++..|++|+|.+|+|+-..|-.|
T Consensus 315 ~~~f~~ls~L~tL~L~~N~it~~~~~aF 342 (498)
T KOG4237|consen 315 SGMFQGLSGLKTLSLYDNQITTVAPGAF 342 (498)
T ss_pred HHhhhccccceeeeecCCeeEEEecccc
Confidence 6667777778888888888776656554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.55 E-value=1.8e-16 Score=144.73 Aligned_cols=168 Identities=29% Similarity=0.329 Sum_probs=110.6
Q ss_pred cccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCC-Ccchh
Q 022302 118 NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIE-GSRTK 196 (299)
Q Consensus 118 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~ 196 (299)
+-+.|-+++.|-.|||++|++...+| .+..+..|++|+|++|.+....-..+..+++|++|.+++.+-+ ..+|.
T Consensus 142 Pn~lfinLtDLLfLDLS~NrLe~LPP-----Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt 216 (1255)
T KOG0444|consen 142 PNSLFINLTDLLFLDLSNNRLEMLPP-----QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT 216 (1255)
T ss_pred CchHHHhhHhHhhhccccchhhhcCH-----HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC
Confidence 34445556666666666666655544 4556666666666666554322333334445555555554433 23454
Q ss_pred hhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc-cccCCCCCCEEeCCCCccCccCcccccCC
Q 022302 197 QGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ-GLAKLKNLEALDLSYNYYIHSSLEGLANL 275 (299)
Q Consensus 197 ~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 275 (299)
.+..+.+|+.+|++.| .+. .+| ..+..+++|+.|+|++|.++... ..+...+|++|+|+.|+++ .+|+++..+
T Consensus 217 -sld~l~NL~dvDlS~N--~Lp-~vP-ecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL 290 (1255)
T KOG0444|consen 217 -SLDDLHNLRDVDLSEN--NLP-IVP-ECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKL 290 (1255)
T ss_pred -chhhhhhhhhcccccc--CCC-cch-HHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhh
Confidence 6777788888888888 443 345 67778888888888888888764 3556678888888888888 788888888
Q ss_pred CCCCEEecCCCCCC-CccCCCc
Q 022302 276 TNLQVLDLSDNQNL-TTLGKPL 296 (299)
Q Consensus 276 ~~L~~L~l~~N~l~-g~ip~~~ 296 (299)
++|+.|.+.+|+++ .-||+.+
T Consensus 291 ~kL~kLy~n~NkL~FeGiPSGI 312 (1255)
T KOG0444|consen 291 TKLTKLYANNNKLTFEGIPSGI 312 (1255)
T ss_pred HHHHHHHhccCcccccCCccch
Confidence 88888888888764 2366543
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.55 E-value=3.8e-16 Score=142.62 Aligned_cols=162 Identities=29% Similarity=0.343 Sum_probs=83.4
Q ss_pred CCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCC
Q 022302 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRY 204 (299)
Q Consensus 125 l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~ 204 (299)
-+++-.|+|++|++..++.. -+-+++.|-.||||+|++. .+|+.+..+..|++|+|++|.+.-.-. .-+..+++
T Consensus 125 AKn~iVLNLS~N~IetIPn~----lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQL-rQLPsmts 198 (1255)
T KOG0444|consen 125 AKNSIVLNLSYNNIETIPNS----LFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQL-RQLPSMTS 198 (1255)
T ss_pred hcCcEEEEcccCccccCCch----HHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHH-hcCccchh
Confidence 33444444444444443332 3334444444444444443 234444444444444444444331111 12233344
Q ss_pred CCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc-ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEec
Q 022302 205 LQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDL 283 (299)
Q Consensus 205 L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l 283 (299)
|++|.+++.. .....+| ..+..+.+|..+|++.|++.-.|. +..+++|+.|+|++|+|+ .+.-..+.+.+|++|++
T Consensus 199 L~vLhms~Tq-RTl~N~P-tsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNl 275 (1255)
T KOG0444|consen 199 LSVLHMSNTQ-RTLDNIP-TSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNL 275 (1255)
T ss_pred hhhhhccccc-chhhcCC-CchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhcc
Confidence 4444444431 1112344 456666677777777777666553 666677777777777777 44445566667777777
Q ss_pred CCCCCCCccCCCc
Q 022302 284 SDNQNLTTLGKPL 296 (299)
Q Consensus 284 ~~N~l~g~ip~~~ 296 (299)
+.|+++ .+|+.+
T Consensus 276 SrNQLt-~LP~av 287 (1255)
T KOG0444|consen 276 SRNQLT-VLPDAV 287 (1255)
T ss_pred ccchhc-cchHHH
Confidence 777775 466543
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.49 E-value=2.8e-14 Score=126.30 Aligned_cols=187 Identities=27% Similarity=0.286 Sum_probs=133.3
Q ss_pred CCcEEEeeeCc-cccccccCCCCccccccccccCCC---CCccEEeCCCCCCCCcchhhhHHhhcCC-CCCCEEECCCCC
Q 022302 91 TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPF---EELQRLDLPGNWFTGIYENRAYDSFGSL-KQLKMLNLGDNF 165 (299)
Q Consensus 91 ~~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n~ 165 (299)
..+++.+++++ .+.+. ....+..+ ++|++|++++|.+.+.....+...+..+ ++|+.|++++|.
T Consensus 80 ~~~L~~L~l~~~~~~~~-----------~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 80 GCGLQELDLSDNALGPD-----------GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred cCceeEEEccCCCCChh-----------HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 35788899887 44321 01122222 5599999999998864443444466777 899999999999
Q ss_pred CCcc----chHhhccCCCCcEEeCCCCcCCCcchh---hhhcCCCCCCEEECCCCcCCCCCc----cchhhhccCCCCcE
Q 022302 166 FNDS----ILPYLNTLTSLTTLILSDNSIEGSRTK---QGLANLRYLQVLDLSGNFNITSGS----LTRLGLANLTNLKK 234 (299)
Q Consensus 166 l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~---~~~~~l~~L~~L~Ls~n~~~~~~~----~~~~~~~~l~~L~~ 234 (299)
+++. ++..+..+++|++|++++|.+++.... ..+..+++|++|++++| .+.+. +. ..+..+++|++
T Consensus 149 l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n--~i~~~~~~~l~-~~~~~~~~L~~ 225 (319)
T cd00116 149 LEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN--GLTDEGASALA-ETLASLKSLEV 225 (319)
T ss_pred CCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC--ccChHHHHHHH-HHhcccCCCCE
Confidence 9843 344566778999999999998853221 13556679999999999 55432 22 45667889999
Q ss_pred EECCCCCCCCcc--cc-----cCCCCCCEEeCCCCccCc----cCcccccCCCCCCEEecCCCCCCCc
Q 022302 235 LDLGSCGITTIQ--GL-----AKLKNLEALDLSYNYYIH----SSLEGLANLTNLQVLDLSDNQNLTT 291 (299)
Q Consensus 235 L~Ls~n~l~~~~--~l-----~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~l~~N~l~g~ 291 (299)
|++++|.+++.. .+ ...+.|++|++++|.++. .+.+.+..+++|+++++++|++...
T Consensus 226 L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred EecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 999999988632 11 134789999999999873 3455667778999999999999743
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.46 E-value=1.1e-12 Score=134.33 Aligned_cols=163 Identities=25% Similarity=0.200 Sum_probs=110.9
Q ss_pred ccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhc
Q 022302 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA 200 (299)
Q Consensus 121 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 200 (299)
.+..+++|+.|+++++.....+| .+..+++|++|++++|.....+|..+.++++|++|++++|...+.+|. .+
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip-----~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-~i- 701 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIP-----DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-GI- 701 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCC-----ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC-cC-
Confidence 34567788888888776555555 467778888888888765566777788888888888887765445664 22
Q ss_pred CCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccc-------------------------------c
Q 022302 201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGL-------------------------------A 249 (299)
Q Consensus 201 ~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l-------------------------------~ 249 (299)
++++|+.|++++| ...+.+| . ...+|+.|++++|.++..+.. .
T Consensus 702 ~l~sL~~L~Lsgc--~~L~~~p-~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~ 775 (1153)
T PLN03210 702 NLKSLYRLNLSGC--SRLKSFP-D---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTM 775 (1153)
T ss_pred CCCCCCEEeCCCC--CCccccc-c---ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhh
Confidence 6777888888777 4444444 1 134566666666665544310 1
Q ss_pred CCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCCc
Q 022302 250 KLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL 296 (299)
Q Consensus 250 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~~ 296 (299)
..++|+.|++++|...+.+|..++++++|+.|++++|...+.+|...
T Consensus 776 ~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~ 822 (1153)
T PLN03210 776 LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI 822 (1153)
T ss_pred ccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC
Confidence 12467777888877777788888888888888888877666777654
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.44 E-value=1.6e-13 Score=121.42 Aligned_cols=166 Identities=31% Similarity=0.309 Sum_probs=122.2
Q ss_pred cccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCc----cchHhhccC-CCCcEEeCCCCcCCCcc
Q 022302 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND----SILPYLNTL-TSLTTLILSDNSIEGSR 194 (299)
Q Consensus 120 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~~ 194 (299)
..+.++++|++|++++|.+.+..+..+...... ++|++|++++|++++ .+...+..+ ++|++|++++|.+++..
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 153 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS 153 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence 456678899999999999987655522222233 559999999999874 233455667 89999999999998532
Q ss_pred hh---hhhcCCCCCCEEECCCCcCCCCCc----cchhhhccCCCCcEEECCCCCCCCcc------cccCCCCCCEEeCCC
Q 022302 195 TK---QGLANLRYLQVLDLSGNFNITSGS----LTRLGLANLTNLKKLDLGSCGITTIQ------GLAKLKNLEALDLSY 261 (299)
Q Consensus 195 p~---~~~~~l~~L~~L~Ls~n~~~~~~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~------~l~~l~~L~~L~L~~ 261 (299)
.. ..+..+++|++|++++| .+.+. ++ ..+..+++|++|++++|.+++.. .+..+++|++|++++
T Consensus 154 ~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~ 230 (319)
T cd00116 154 CEALAKALRANRDLKELNLANN--GIGDAGIRALA-EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD 230 (319)
T ss_pred HHHHHHHHHhCCCcCEEECcCC--CCchHHHHHHH-HHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCC
Confidence 21 24667789999999999 65532 22 34556679999999999987543 266788999999999
Q ss_pred CccCccCccccc-----CCCCCCEEecCCCCCC
Q 022302 262 NYYIHSSLEGLA-----NLTNLQVLDLSDNQNL 289 (299)
Q Consensus 262 N~l~~~~p~~l~-----~l~~L~~L~l~~N~l~ 289 (299)
|.+++.....+. ..+.|++|++++|.++
T Consensus 231 n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 231 NNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred CcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 999864333332 2478999999999986
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.44 E-value=2.6e-13 Score=130.98 Aligned_cols=83 Identities=24% Similarity=0.215 Sum_probs=61.1
Q ss_pred CCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEEec
Q 022302 204 YLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDL 283 (299)
Q Consensus 204 ~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l 283 (299)
+|+.|++++| .+.+ +| . ..++|+.|++++|+++.++.+ ..+|+.|++++|+++ .+|+.+.++++|+.|++
T Consensus 383 ~L~~LdLs~N--~Lt~-LP-~---l~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 383 GLKELIVSGN--RLTS-LP-V---LPSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 452 (788)
T ss_pred ccceEEecCC--cccC-CC-C---cccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence 5666666666 4432 33 1 124677777777777766532 356888899999988 78999999999999999
Q ss_pred CCCCCCCccCCCc
Q 022302 284 SDNQNLTTLGKPL 296 (299)
Q Consensus 284 ~~N~l~g~ip~~~ 296 (299)
++|+++|.+|..+
T Consensus 453 s~N~Ls~~~~~~L 465 (788)
T PRK15387 453 EGNPLSERTLQAL 465 (788)
T ss_pred CCCCCCchHHHHH
Confidence 9999999877643
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.44 E-value=1.6e-15 Score=131.97 Aligned_cols=157 Identities=31% Similarity=0.364 Sum_probs=131.3
Q ss_pred ccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhh
Q 022302 119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG 198 (299)
Q Consensus 119 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~ 198 (299)
+..+..+.++..+++.+|.+....|. .+. ++.|++||...|-+. .+|+.++.+.+|+-|++.+|++. .+| +
T Consensus 153 p~~~~~~~~l~~l~~~~n~l~~l~~~----~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP--e 223 (565)
T KOG0472|consen 153 PEDMVNLSKLSKLDLEGNKLKALPEN----HIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP--E 223 (565)
T ss_pred chHHHHHHHHHHhhccccchhhCCHH----HHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC--C
Confidence 34566677888888888888888775 333 888999999998875 68888999999999999999998 466 5
Q ss_pred hcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc-ccCCCCCCEEeCCCCccCccCcccccCCCC
Q 022302 199 LANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNYYIHSSLEGLANLTN 277 (299)
Q Consensus 199 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 277 (299)
|.++..|++++++.| . ...+|.+-..+++++.+||+.+|+++..|. +..+++|+.||+++|.++ ..|.+++++ +
T Consensus 224 f~gcs~L~Elh~g~N--~-i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-h 298 (565)
T KOG0472|consen 224 FPGCSLLKELHVGEN--Q-IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-H 298 (565)
T ss_pred CCccHHHHHHHhccc--H-HHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccc-cCCcccccc-e
Confidence 899999999999998 3 335675566689999999999999998874 788899999999999999 678889999 8
Q ss_pred CCEEecCCCCCC
Q 022302 278 LQVLDLSDNQNL 289 (299)
Q Consensus 278 L~~L~l~~N~l~ 289 (299)
|+.|-+.||++.
T Consensus 299 L~~L~leGNPlr 310 (565)
T KOG0472|consen 299 LKFLALEGNPLR 310 (565)
T ss_pred eeehhhcCCchH
Confidence 999999999874
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=1e-11 Score=120.55 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=28.9
Q ss_pred hcccccchHHHHHHHHHhhhhccCccCCCCCCCCCCCCCCCCCCCCCCCC
Q 022302 30 IHGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCC 79 (299)
Q Consensus 30 ~~~~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c 79 (299)
++...+..+.|...+.++.+.+..|. |-+..-.+|++ ..++|
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~l~~p~---~~~~~~~~~~~-----~~~fc 95 (754)
T PRK15370 54 CHPPETASPEEIKSKFECLRMLAFPA---YADNIQYSRGG-----ADQYC 95 (754)
T ss_pred hCCCCCCCHHHHHHHHHHHHHhcCCc---hhhccccccCC-----CCccc
Confidence 34456677889999999999998773 21122334988 57888
No 17
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.37 E-value=4.6e-15 Score=129.18 Aligned_cols=162 Identities=27% Similarity=0.316 Sum_probs=97.0
Q ss_pred ccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhc
Q 022302 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA 200 (299)
Q Consensus 121 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 200 (299)
.++.+..++.++.++|.+....+ .++.+..|+.++..+|+++ ..|+.+..+.+|..+++.+|++. .+|+..+.
T Consensus 109 ~i~s~~~l~~l~~s~n~~~el~~-----~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~ 181 (565)
T KOG0472|consen 109 QIGSLISLVKLDCSSNELKELPD-----SIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA 181 (565)
T ss_pred HHhhhhhhhhhhccccceeecCc-----hHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH
Confidence 34445555555555555555444 4555555555555555554 34455555555555555555554 23332233
Q ss_pred CCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc------------------------ccCCCCCCE
Q 022302 201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG------------------------LAKLKNLEA 256 (299)
Q Consensus 201 ~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------------------------l~~l~~L~~ 256 (299)
++.|+++|...| ..+.+| ..++.+.+|..|++..|++...|+ ..+++++..
T Consensus 182 -m~~L~~ld~~~N---~L~tlP-~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 182 -MKRLKHLDCNSN---LLETLP-PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLV 256 (565)
T ss_pred -HHHHHhcccchh---hhhcCC-hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhccccccee
Confidence 556666666665 223455 455666666666666666554442 346677788
Q ss_pred EeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCCc
Q 022302 257 LDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL 296 (299)
Q Consensus 257 L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~~ 296 (299)
|||.+|+++ ..|+.+.-+.+|++||+++|.+++ +|.++
T Consensus 257 LDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~sL 294 (565)
T KOG0472|consen 257 LDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPYSL 294 (565)
T ss_pred eeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCccc
Confidence 888888888 788888888888888888888875 55443
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.35 E-value=1.4e-13 Score=130.83 Aligned_cols=163 Identities=32% Similarity=0.393 Sum_probs=118.8
Q ss_pred cccCCCCCccEEeCCCCCCCCcchhhhH------Hhh---------------cCCCCCCEEECCCCCCCccchHhhccCC
Q 022302 120 SLFHPFEELQRLDLPGNWFTGIYENRAY------DSF---------------GSLKQLKMLNLGDNFFNDSILPYLNTLT 178 (299)
Q Consensus 120 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~------~~l---------------~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 178 (299)
....+++.|++|+|..|++....+..+. ..+ ..++.|+.|.+.+|.+++..-+.+.++.
T Consensus 304 ~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~ 383 (1081)
T KOG0618|consen 304 PFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK 383 (1081)
T ss_pred CcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccc
Confidence 3456678888888888888776442100 000 1123466677888888877777778888
Q ss_pred CCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEe
Q 022302 179 SLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALD 258 (299)
Q Consensus 179 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~ 258 (299)
+|++|+|++|++. .+|...+.++..|++|+||+| .+. .+| ..+..++.|++|...+|.+...|.+..++.|+.+|
T Consensus 384 hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGN--kL~-~Lp-~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lD 458 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGN--KLT-TLP-DTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLD 458 (1081)
T ss_pred ceeeeeecccccc-cCCHHHHhchHHhHHHhcccc--hhh-hhh-HHHHhhhhhHHHhhcCCceeechhhhhcCcceEEe
Confidence 8888888888887 477777888888888888888 544 345 66777888888888888888888888889999999
Q ss_pred CCCCccCccCcccccCCCCCCEEecCCCC
Q 022302 259 LSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287 (299)
Q Consensus 259 L~~N~l~~~~p~~l~~l~~L~~L~l~~N~ 287 (299)
++.|.++....+.....++|++||++||.
T Consensus 459 lS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 459 LSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred cccchhhhhhhhhhCCCcccceeeccCCc
Confidence 99888875433333334889999999886
No 19
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.35 E-value=1.3e-11 Score=126.47 Aligned_cols=163 Identities=23% Similarity=0.177 Sum_probs=89.0
Q ss_pred cCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCC-------------
Q 022302 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDN------------- 188 (299)
Q Consensus 122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n------------- 188 (299)
++.+++|++|++++|.....+|. .+..+++|+.|++++|..-..+|..+ ++++|++|++++|
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~----si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL 727 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPS----SIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNI 727 (1153)
T ss_pred cccCCcccEEEecCCCCccccch----hhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCc
Confidence 55566777777777655555554 56666666666666654333344333 3444444444443
Q ss_pred --------cCCCcchhh-----------------------------hhcCCCCCCEEECCCCcCCCCCccchhhhccCCC
Q 022302 189 --------SIEGSRTKQ-----------------------------GLANLRYLQVLDLSGNFNITSGSLTRLGLANLTN 231 (299)
Q Consensus 189 --------~l~~~~p~~-----------------------------~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~ 231 (299)
.+. .+|.. .....++|+.|++++| ...+.+| ..++++++
T Consensus 728 ~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n--~~l~~lP-~si~~L~~ 803 (1153)
T PLN03210 728 SWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI--PSLVELP-SSIQNLHK 803 (1153)
T ss_pred CeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC--CCccccC-hhhhCCCC
Confidence 322 12210 0001234555566655 4445555 55666677
Q ss_pred CcEEECCCCC-CCCcccccCC---------------------CCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCC
Q 022302 232 LKKLDLGSCG-ITTIQGLAKL---------------------KNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNL 289 (299)
Q Consensus 232 L~~L~Ls~n~-l~~~~~l~~l---------------------~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 289 (299)
|+.|++++|. +...+....+ ++|+.|+|++|.++ .+|..+..+++|+.|++++|+-.
T Consensus 804 L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L 882 (1153)
T PLN03210 804 LEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNL 882 (1153)
T ss_pred CCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCc
Confidence 7777776653 3332211112 35666666667666 56777778888888888875543
Q ss_pred CccCC
Q 022302 290 TTLGK 294 (299)
Q Consensus 290 g~ip~ 294 (299)
..+|.
T Consensus 883 ~~l~~ 887 (1153)
T PLN03210 883 QRVSL 887 (1153)
T ss_pred CccCc
Confidence 44554
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.34 E-value=1.8e-13 Score=119.05 Aligned_cols=109 Identities=28% Similarity=0.273 Sum_probs=86.6
Q ss_pred CccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCC-CcCCCcchhhhhcCCCCC
Q 022302 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSD-NSIEGSRTKQGLANLRYL 205 (299)
Q Consensus 127 ~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~~l~~L 205 (299)
.-.+++|..|+|+.+.+. +|..+++|+.|||++|.++.+-|..|..+.+|..|.+.+ |+|+ .+|...|.++..+
T Consensus 68 ~tveirLdqN~I~~iP~~----aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPG----AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSL 142 (498)
T ss_pred cceEEEeccCCcccCChh----hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHH
Confidence 456799999999999887 999999999999999999999999999999988887766 8888 5888788888888
Q ss_pred CEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCC
Q 022302 206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGIT 243 (299)
Q Consensus 206 ~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 243 (299)
+.|.+.-| +..-... ..+..++++..|.+.+|.+.
T Consensus 143 qrLllNan--~i~Cir~-~al~dL~~l~lLslyDn~~q 177 (498)
T KOG4237|consen 143 QRLLLNAN--HINCIRQ-DALRDLPSLSLLSLYDNKIQ 177 (498)
T ss_pred HHHhcChh--hhcchhH-HHHHHhhhcchhcccchhhh
Confidence 88877777 4443322 55666666666666555544
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.30 E-value=2.5e-11 Score=117.84 Aligned_cols=146 Identities=24% Similarity=0.270 Sum_probs=73.2
Q ss_pred CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL 205 (299)
Q Consensus 126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L 205 (299)
++|++|++++|.++.. |. .+ .++|+.|++++|.+. .+|..+. .+|++|++++|+++ .+|. .+. ++|
T Consensus 220 ~nL~~L~Ls~N~LtsL-P~----~l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~-~l~--~sL 285 (754)
T PRK15370 220 GNIKTLYANSNQLTSI-PA----TL--PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPE-NLP--EEL 285 (754)
T ss_pred cCCCEEECCCCccccC-Ch----hh--hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-cccc-ccC--CCC
Confidence 3566666666666643 22 12 124555555555554 3344332 35566666666555 2443 221 355
Q ss_pred CEEECCCCcCCCCCccchhhh-------------------ccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCc
Q 022302 206 QVLDLSGNFNITSGSLTRLGL-------------------ANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIH 266 (299)
Q Consensus 206 ~~L~Ls~n~~~~~~~~~~~~~-------------------~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~ 266 (299)
+.|++++| .+.+ +| ..+ ...++|+.|++++|.++..+. .-.++|+.|++++|+++
T Consensus 286 ~~L~Ls~N--~Lt~-LP-~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~-~l~~sL~~L~Ls~N~L~- 359 (754)
T PRK15370 286 RYLSVYDN--SIRT-LP-AHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPA-SLPPELQVLDVSKNQIT- 359 (754)
T ss_pred cEEECCCC--cccc-Cc-ccchhhHHHHHhcCCccccCCccccccceeccccCCccccCCh-hhcCcccEEECCCCCCC-
Confidence 55555555 3322 11 000 012345555666665555432 11246667777777666
Q ss_pred cCcccccCCCCCCEEecCCCCCCCccCC
Q 022302 267 SSLEGLANLTNLQVLDLSDNQNLTTLGK 294 (299)
Q Consensus 267 ~~p~~l~~l~~L~~L~l~~N~l~g~ip~ 294 (299)
.+|..+. ++|++|++++|+++ .+|+
T Consensus 360 ~LP~~lp--~~L~~LdLs~N~Lt-~LP~ 384 (754)
T PRK15370 360 VLPETLP--PTITTLDVSRNALT-NLPE 384 (754)
T ss_pred cCChhhc--CCcCEEECCCCcCC-CCCH
Confidence 4555442 46667777777665 3554
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.29 E-value=1.5e-11 Score=118.27 Aligned_cols=107 Identities=31% Similarity=0.445 Sum_probs=95.9
Q ss_pred CccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCC
Q 022302 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ 206 (299)
Q Consensus 127 ~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~ 206 (299)
.++.|+|++|.+.+.+|. .+..+++|+.|+|++|.+.|.+|..++.+++|++|+|++|++++.+|. .++.+++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~----~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~-~l~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPN----DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLR 493 (623)
T ss_pred EEEEEECCCCCccccCCH----HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch-HHhcCCCCC
Confidence 478899999999999998 899999999999999999999999999999999999999999998886 799999999
Q ss_pred EEECCCCcCCCCCccchhhhcc-CCCCcEEECCCCC
Q 022302 207 VLDLSGNFNITSGSLTRLGLAN-LTNLKKLDLGSCG 241 (299)
Q Consensus 207 ~L~Ls~n~~~~~~~~~~~~~~~-l~~L~~L~Ls~n~ 241 (299)
+|++++| .+.|.+| ..+.. ..++..+++.+|.
T Consensus 494 ~L~Ls~N--~l~g~iP-~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 494 ILNLNGN--SLSGRVP-AALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EEECcCC--cccccCC-hHHhhccccCceEEecCCc
Confidence 9999999 8999999 55554 3567788888876
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.27 E-value=3.8e-11 Score=116.20 Aligned_cols=38 Identities=24% Similarity=0.079 Sum_probs=23.4
Q ss_pred CCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCC
Q 022302 252 KNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGK 294 (299)
Q Consensus 252 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~ 294 (299)
++|+.|++++|.+++ +|.. .++|+.|++++|++.+ +|.
T Consensus 382 ~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~ 419 (788)
T PRK15387 382 SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPM 419 (788)
T ss_pred cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCc
Confidence 356677777777663 4432 2456777777777764 554
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.26 E-value=6.5e-12 Score=100.64 Aligned_cols=127 Identities=31% Similarity=0.348 Sum_probs=42.5
Q ss_pred cCCCCCccEEeCCCCCCCCcchhhhHHhhc-CCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhc
Q 022302 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFG-SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA 200 (299)
Q Consensus 122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 200 (299)
+.+..++++|+|.+|.++.+. .++ .+.+|+.|++++|.++.. +.+..+++|++|++++|+++. +......
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie------~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~ 85 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE------NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDK 85 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHH
T ss_pred ccccccccccccccccccccc------chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHH
Confidence 334456777888888777652 333 467778888888877642 246667778888888887774 4331223
Q ss_pred CCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc-----ccCCCCCCEEeC
Q 022302 201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG-----LAKLKNLEALDL 259 (299)
Q Consensus 201 ~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----l~~l~~L~~L~L 259 (299)
.+++|++|++++|.+...+.+ ..+..+++|++|++.+|.++.... +..+|+|+.||-
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l--~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNEL--EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp H-TT--EEE-TTS---SCCCC--GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred hCCcCCEEECcCCcCCChHHh--HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 577777788877744333333 345667777777777777665432 556667776663
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.24 E-value=3.6e-13 Score=127.97 Aligned_cols=164 Identities=29% Similarity=0.324 Sum_probs=111.3
Q ss_pred cccCCCCCccEEeCCCCCCCCcchhhhH-------------------HhhcCCCCCCEEECCCCCCCccchHhhc-----
Q 022302 120 SLFHPFEELQRLDLPGNWFTGIYENRAY-------------------DSFGSLKQLKMLNLGDNFFNDSILPYLN----- 175 (299)
Q Consensus 120 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~-------------------~~l~~l~~L~~L~Ls~n~l~~~~p~~l~----- 175 (299)
+.+..+.+|+.++..+|.++.. |.++. ....+++.|++|+|..|++....+..+.
T Consensus 258 ~wi~~~~nle~l~~n~N~l~~l-p~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~ 336 (1081)
T KOG0618|consen 258 EWIGACANLEALNANHNRLVAL-PLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNAS 336 (1081)
T ss_pred HHHHhcccceEecccchhHHhh-HHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHH
Confidence 5667777777777777777443 22100 1334566777777777776532211111
Q ss_pred --------------------cCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEE
Q 022302 176 --------------------TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKL 235 (299)
Q Consensus 176 --------------------~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L 235 (299)
.++.|+.|++.+|.++...-+ .+.+..+|+.|+|++| .+ +.+|...+.++..|+.|
T Consensus 337 l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLsyN--rL-~~fpas~~~kle~LeeL 412 (1081)
T KOG0618|consen 337 LNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP-VLVNFKHLKVLHLSYN--RL-NSFPASKLRKLEELEEL 412 (1081)
T ss_pred HHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh-hhccccceeeeeeccc--cc-ccCCHHHHhchHHhHHH
Confidence 123356666677777655444 5677788888888888 33 34566677778888888
Q ss_pred ECCCCCCCCccc-ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCC
Q 022302 236 DLGSCGITTIQG-LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLT 290 (299)
Q Consensus 236 ~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g 290 (299)
+|++|+++..+. +..++.|++|....|++. ..| .+..++.|+.+|++.|+++.
T Consensus 413 ~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 413 NLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred hcccchhhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence 888888887763 777788888888888887 567 78889999999999999863
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.20 E-value=2.8e-11 Score=97.02 Aligned_cols=128 Identities=27% Similarity=0.325 Sum_probs=55.2
Q ss_pred cEEEeeeCc-cccccccCCCCccccccccccC-CCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc
Q 022302 93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFH-PFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (299)
Q Consensus 93 ~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 170 (299)
+...++|.+ .+.. ...++ .+.+|+.|++++|.++... .+..+++|++|++++|.++...
T Consensus 20 ~~~~L~L~~n~I~~-------------Ie~L~~~l~~L~~L~Ls~N~I~~l~------~l~~L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 20 KLRELNLRGNQIST-------------IENLGATLDKLEVLDLSNNQITKLE------GLPGLPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS--S--T------T----TT--EEE--SS---S-C
T ss_pred cccccccccccccc-------------ccchhhhhcCCCEEECCCCCCcccc------CccChhhhhhcccCCCCCCccc
Confidence 456777777 4432 12344 5789999999999999863 5778999999999999998643
Q ss_pred hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCC
Q 022302 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGS 239 (299)
Q Consensus 171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~ 239 (299)
+.....+++|++|++++|++...-.-..+..+++|+.|++.+|++..........+..+|+|+.||-..
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 333346899999999999997533324578899999999999944333333335677899999998543
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.18 E-value=4.3e-11 Score=109.34 Aligned_cols=156 Identities=36% Similarity=0.415 Sum_probs=112.5
Q ss_pred CccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCC
Q 022302 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ 206 (299)
Q Consensus 127 ~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~ 206 (299)
+|+.|++++|.+..... .+..+++|+.|++++|+++. +|...+..+.|+.|++++|++. .+|. .......|+
T Consensus 141 nL~~L~l~~N~i~~l~~-----~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~-~~~~~~~L~ 212 (394)
T COG4886 141 NLKELDLSDNKIESLPS-----PLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPP-EIELLSALE 212 (394)
T ss_pred hcccccccccchhhhhh-----hhhccccccccccCCchhhh-hhhhhhhhhhhhheeccCCccc-cCch-hhhhhhhhh
Confidence 67777777777766532 46777778888888887764 4554556777788888888777 3554 334555577
Q ss_pred EEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCc-ccccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCC
Q 022302 207 VLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTI-QGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSD 285 (299)
Q Consensus 207 ~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~ 285 (299)
++.+++| .... .+ ..+..+.++..+.+.+|++... ..++.+++++.|++++|.++ .++. ++...+++.|++++
T Consensus 213 ~l~~~~N--~~~~-~~-~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 213 ELDLSNN--SIIE-LL-SSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSG 286 (394)
T ss_pred hhhhcCC--ccee-cc-hhhhhcccccccccCCceeeeccchhccccccceecccccccc-cccc-ccccCccCEEeccC
Confidence 8888877 3222 22 4567777888888888887763 35778888999999999999 4444 88999999999999
Q ss_pred CCCCCccCCCc
Q 022302 286 NQNLTTLGKPL 296 (299)
Q Consensus 286 N~l~g~ip~~~ 296 (299)
|.++...|...
T Consensus 287 n~~~~~~~~~~ 297 (394)
T COG4886 287 NSLSNALPLIA 297 (394)
T ss_pred ccccccchhhh
Confidence 99987666543
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.1e-11 Score=109.33 Aligned_cols=164 Identities=22% Similarity=0.233 Sum_probs=118.6
Q ss_pred ccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHh-hccCCCCcEEeCCCCcCCCcchhhhh
Q 022302 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LNTLTSLTTLILSDNSIEGSRTKQGL 199 (299)
Q Consensus 121 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~~~ 199 (299)
....|++++.|||+.|-+....+ +......+++|+.|+++.|++.-..... -..+++|+.|.|+.|.++..-.....
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~--v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~ 218 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFP--VLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWIL 218 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHH--HHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHH
Confidence 55678899999999998877644 2335577899999999999875332221 12567889999999988843333356
Q ss_pred cCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc---cccCCCCCCEEeCCCCccCcc-Cccc----
Q 022302 200 ANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ---GLAKLKNLEALDLSYNYYIHS-SLEG---- 271 (299)
Q Consensus 200 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~-~p~~---- 271 (299)
..+|+|+.|++.+| ....... .....+..|+.|||++|++...+ ..+.++.|+.|+++.+.+... .|+.
T Consensus 219 ~~fPsl~~L~L~~N--~~~~~~~-~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~ 295 (505)
T KOG3207|consen 219 LTFPSLEVLYLEAN--EIILIKA-TSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLD 295 (505)
T ss_pred HhCCcHHHhhhhcc--cccceec-chhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchh
Confidence 67899999999998 3222221 23455678999999999877665 377888999999999888752 3433
Q ss_pred -ccCCCCCCEEecCCCCCC
Q 022302 272 -LANLTNLQVLDLSDNQNL 289 (299)
Q Consensus 272 -l~~l~~L~~L~l~~N~l~ 289 (299)
...+++|++|++..|++.
T Consensus 296 kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 296 KTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhcccccceeeecccCccc
Confidence 357889999999999883
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.15 E-value=2.2e-11 Score=104.70 Aligned_cols=169 Identities=21% Similarity=0.177 Sum_probs=107.4
Q ss_pred ccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHh-------------hccCCCCcEEeCCC
Q 022302 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-------------LNTLTSLTTLILSD 187 (299)
Q Consensus 121 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-------------l~~l~~L~~L~L~~ 187 (299)
.+..+++|++||||+|.|.-..+..+.+-+..+..|++|.|.+|.+...--.. .+.-+.|++++.++
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 45566788888888888877766666666777888888888888775321112 23346788888888
Q ss_pred CcCCCcch---hhhhcCCCCCCEEECCCCcCCCCCc-cchhhhccCCCCcEEECCCCCCCCcc------cccCCCCCCEE
Q 022302 188 NSIEGSRT---KQGLANLRYLQVLDLSGNFNITSGS-LTRLGLANLTNLKKLDLGSCGITTIQ------GLAKLKNLEAL 257 (299)
Q Consensus 188 n~l~~~~p---~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~------~l~~l~~L~~L 257 (299)
|++...-- ...|...+.|+.+.+..|.+...|. .....+..+++|++|||.+|-++... .+..+++|+.|
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 88763211 1245666777777777775554444 22256677778888888877776432 25566677777
Q ss_pred eCCCCccCccCcccc-----cCCCCCCEEecCCCCCC
Q 022302 258 DLSYNYYIHSSLEGL-----ANLTNLQVLDLSDNQNL 289 (299)
Q Consensus 258 ~L~~N~l~~~~p~~l-----~~l~~L~~L~l~~N~l~ 289 (299)
++++|.+.......+ ...++|+.|.+.+|.++
T Consensus 247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred cccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 777776654332222 23456666666666553
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=1.7e-11 Score=103.63 Aligned_cols=129 Identities=36% Similarity=0.418 Sum_probs=56.4
Q ss_pred CCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCc
Q 022302 154 KQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLK 233 (299)
Q Consensus 154 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~ 233 (299)
+.|+++|||+|.++ .+.++..-.|.++.|+++.|.+.. +. .++.+++|.+|||++| .++... ..-..+.+++
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~--nLa~L~~L~~LDLS~N--~Ls~~~--Gwh~KLGNIK 355 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQ--NLAELPQLQLLDLSGN--LLAECV--GWHLKLGNIK 355 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceee-eh--hhhhcccceEeecccc--hhHhhh--hhHhhhcCEe
Confidence 34444455555444 233444444455555555554442 11 2444445555555554 222111 1222334444
Q ss_pred EEECCCCCCCCcccccCCCCCCEEeCCCCccCcc-CcccccCCCCCCEEecCCCCCCC
Q 022302 234 KLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHS-SLEGLANLTNLQVLDLSDNQNLT 290 (299)
Q Consensus 234 ~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~g 290 (299)
.|.|+.|.+.....+.++-+|..||+++|+|... --..++++|-|+++.+.+|++.+
T Consensus 356 tL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 356 TLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 5555555444444444444455555555544421 11234444445555555555443
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=1.7e-11 Score=103.68 Aligned_cols=130 Identities=32% Similarity=0.346 Sum_probs=107.3
Q ss_pred CCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCC
Q 022302 123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL 202 (299)
Q Consensus 123 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l 202 (299)
...+.|+++||++|.++.+.. +..-.|+++.|++|+|.+... ..+..+++|+.|||++|.++. +.. +-.++
T Consensus 281 dTWq~LtelDLS~N~I~~iDE-----SvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~G-wh~KL 351 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDE-----SVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVG-WHLKL 351 (490)
T ss_pred chHhhhhhccccccchhhhhh-----hhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhh-hHhhh
Confidence 344679999999999887654 677789999999999999743 348899999999999999873 443 56778
Q ss_pred CCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc---cccCCCCCCEEeCCCCccCc
Q 022302 203 RYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ---GLAKLKNLEALDLSYNYYIH 266 (299)
Q Consensus 203 ~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~N~l~~ 266 (299)
-+++.|.|++| .... + ..+..+-+|.+||+.+|++.... .++++|-|+++.|.+|.+.+
T Consensus 352 GNIKtL~La~N--~iE~-L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 352 GNIKTLKLAQN--KIET-L--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred cCEeeeehhhh--hHhh-h--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 89999999999 4432 2 46777889999999999988764 59999999999999999985
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.05 E-value=4.2e-12 Score=115.27 Aligned_cols=153 Identities=30% Similarity=0.339 Sum_probs=119.5
Q ss_pred CCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCC
Q 022302 123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL 202 (299)
Q Consensus 123 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l 202 (299)
..+..|+.+.+..|.+..+.+ .+..+..|.+|||+.|+++ .+|..+..|+ |+.|.+++|+++ .+|. .++.+
T Consensus 95 ~~f~~Le~liLy~n~~r~ip~-----~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~-~ig~~ 165 (722)
T KOG0532|consen 95 CAFVSLESLILYHNCIRTIPE-----AICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPE-EIGLL 165 (722)
T ss_pred HHHHHHHHHHHHhccceecch-----hhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCc-ccccc
Confidence 334456666666666655443 6778888889999999887 4666676665 888889999887 4776 67788
Q ss_pred CCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc-ccCCCCCCEEeCCCCccCccCcccccCCCCCCEE
Q 022302 203 RYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVL 281 (299)
Q Consensus 203 ~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 281 (299)
..|..|+.+.| ... .+| ..++.+.+|+.|.+..|++...++ +..+ .|..||++.|++. .+|-.|.+|++|++|
T Consensus 166 ~tl~~ld~s~n--ei~-slp-sql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l 239 (722)
T KOG0532|consen 166 PTLAHLDVSKN--EIQ-SLP-SQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVL 239 (722)
T ss_pred hhHHHhhhhhh--hhh-hch-HHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheee
Confidence 88999999988 443 345 677888899999999998887764 5544 5899999999999 899999999999999
Q ss_pred ecCCCCCCC
Q 022302 282 DLSDNQNLT 290 (299)
Q Consensus 282 ~l~~N~l~g 290 (299)
-|.+|++..
T Consensus 240 ~LenNPLqS 248 (722)
T KOG0532|consen 240 QLENNPLQS 248 (722)
T ss_pred eeccCCCCC
Confidence 999999964
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.5e-10 Score=102.26 Aligned_cols=185 Identities=28% Similarity=0.271 Sum_probs=130.7
Q ss_pred CcEEEeeeCccccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCcc-c
Q 022302 92 RRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS-I 170 (299)
Q Consensus 92 ~~v~~l~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~ 170 (299)
.+|+.+||+.++.-+. ........++++|+.|+++.|.+....... .-..+++|+.|.++.|.++.. +
T Consensus 146 ~~v~~LdLS~NL~~nw--------~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~---~~~~l~~lK~L~l~~CGls~k~V 214 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNW--------FPVLKIAEQLPSLENLNLSSNRLSNFISSN---TTLLLSHLKQLVLNSCGLSWKDV 214 (505)
T ss_pred CcceeecchhhhHHhH--------HHHHHHHHhcccchhcccccccccCCcccc---chhhhhhhheEEeccCCCCHHHH
Confidence 4678888877443211 112345678999999999999987665432 223678999999999999743 2
Q ss_pred hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc---
Q 022302 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--- 247 (299)
Q Consensus 171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--- 247 (299)
...+..+|+|+.|+|..|.... +.......+..|++|+|++|++......+ ..+.++.|+.|+++.|.+.+...
T Consensus 215 ~~~~~~fPsl~~L~L~~N~~~~-~~~~~~~i~~~L~~LdLs~N~li~~~~~~--~~~~l~~L~~Lnls~tgi~si~~~d~ 291 (505)
T KOG3207|consen 215 QWILLTFPSLEVLYLEANEIIL-IKATSTKILQTLQELDLSNNNLIDFDQGY--KVGTLPGLNQLNLSSTGIASIAEPDV 291 (505)
T ss_pred HHHHHhCCcHHHhhhhcccccc-eecchhhhhhHHhhccccCCccccccccc--ccccccchhhhhccccCcchhcCCCc
Confidence 3344578999999999995322 11123456778999999999444333333 56788999999999999887531
Q ss_pred -----ccCCCCCCEEeCCCCccCc-cCcccccCCCCCCEEecCCCCCCC
Q 022302 248 -----LAKLKNLEALDLSYNYYIH-SSLEGLANLTNLQVLDLSDNQNLT 290 (299)
Q Consensus 248 -----l~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~l~~N~l~g 290 (299)
...+++|++|++..|++.. ..-..+..+++|+.|.+..|.+.-
T Consensus 292 ~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 292 ESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 3457899999999999963 122455667888888888888864
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.98 E-value=4.7e-10 Score=102.49 Aligned_cols=157 Identities=40% Similarity=0.466 Sum_probs=127.5
Q ss_pred ccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCC-CCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhh
Q 022302 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLK-QLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL 199 (299)
Q Consensus 121 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 199 (299)
.+..++.++.|++.+|.++.+.+ ....++ +|+.|+++.|.+. .+|..+..+++|+.|++++|++.. ++. ..
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~-----~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~-~~ 182 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPP-----LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPK-LL 182 (394)
T ss_pred hhhcccceeEEecCCcccccCcc-----ccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhh-hh
Confidence 44556789999999999998876 456664 9999999999997 456678899999999999999984 665 44
Q ss_pred cCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCC-CCCcccccCCCCCCEEeCCCCccCccCcccccCCCCC
Q 022302 200 ANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCG-ITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNL 278 (299)
Q Consensus 200 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 278 (299)
+..++|+.|++++| .+. .+| ........|+.+.+++|+ +.....+..++++..+.+.+|++. ..+..++.++++
T Consensus 183 ~~~~~L~~L~ls~N--~i~-~l~-~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l 257 (394)
T COG4886 183 SNLSNLNNLDLSGN--KIS-DLP-PEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNL 257 (394)
T ss_pred hhhhhhhheeccCC--ccc-cCc-hhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccchhcccccc
Confidence 58899999999999 554 344 333456679999999995 445556888899999999999988 457888999999
Q ss_pred CEEecCCCCCCC
Q 022302 279 QVLDLSDNQNLT 290 (299)
Q Consensus 279 ~~L~l~~N~l~g 290 (299)
++|++++|.++.
T Consensus 258 ~~L~~s~n~i~~ 269 (394)
T COG4886 258 ETLDLSNNQISS 269 (394)
T ss_pred ceeccccccccc
Confidence 999999999874
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.91 E-value=7.6e-10 Score=73.15 Aligned_cols=59 Identities=34% Similarity=0.432 Sum_probs=30.8
Q ss_pred CccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCc
Q 022302 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNS 189 (299)
Q Consensus 127 ~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 189 (299)
+|++|++++|++....+. .|.++++|++|++++|.++...+..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~----~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPD----SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTT----TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHH----HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 455555555555554443 45555555555555555554444455555555555555554
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.91 E-value=2e-11 Score=110.95 Aligned_cols=157 Identities=29% Similarity=0.308 Sum_probs=131.2
Q ss_pred CCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCC
Q 022302 124 PFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLR 203 (299)
Q Consensus 124 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~ 203 (299)
.+..-...|++.|++..... .+..+..|+.+.|..|.+. .+|+.+.++..|.+|||+.|+++ .+|. .+..++
T Consensus 73 ~ltdt~~aDlsrNR~~elp~-----~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~-~lC~lp 144 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPE-----EACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPD-GLCDLP 144 (722)
T ss_pred cccchhhhhccccccccCch-----HHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCCh-hhhcCc
Confidence 45566778999999987644 5666778889999999987 68999999999999999999998 4776 566665
Q ss_pred CCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc-ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEe
Q 022302 204 YLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLD 282 (299)
Q Consensus 204 ~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 282 (299)
|+.|-+++| ++. .+| ..++....|..||.+.|.+...++ ++.+.+|+.|.+..|++. .+|+.+..++ |..||
T Consensus 145 -Lkvli~sNN--kl~-~lp-~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lD 217 (722)
T KOG0532|consen 145 -LKVLIVSNN--KLT-SLP-EEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLD 217 (722)
T ss_pred -ceeEEEecC--ccc-cCC-cccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeee
Confidence 999999999 443 456 677888999999999999988765 899999999999999999 6888888665 89999
Q ss_pred cCCCCCCCccCCCc
Q 022302 283 LSDNQNLTTLGKPL 296 (299)
Q Consensus 283 l~~N~l~g~ip~~~ 296 (299)
+++|+++ .||-.|
T Consensus 218 fScNkis-~iPv~f 230 (722)
T KOG0532|consen 218 FSCNKIS-YLPVDF 230 (722)
T ss_pred cccCcee-ecchhh
Confidence 9999997 588655
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.87 E-value=9.9e-10 Score=94.63 Aligned_cols=189 Identities=22% Similarity=0.260 Sum_probs=135.9
Q ss_pred CcEEEeeeCccccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhh---------hHHhhcCCCCCCEEECC
Q 022302 92 RRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENR---------AYDSFGSLKQLKMLNLG 162 (299)
Q Consensus 92 ~~v~~l~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------~~~~l~~l~~L~~L~Ls 162 (299)
++.+.++|+.+-.|.- + ...-...+..++.|++|.|.+|.+...-... .......-++|+++..+
T Consensus 92 ~~L~~ldLSDNA~G~~--g----~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPK--G----IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred CceeEeeccccccCcc--c----hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 4788899987433310 0 0011234667899999999999886553332 22344567899999999
Q ss_pred CCCCCccc----hHhhccCCCCcEEeCCCCcCCCc---chhhhhcCCCCCCEEECCCCcCCCC--Ccc-chhhhccCCCC
Q 022302 163 DNFFNDSI----LPYLNTLTSLTTLILSDNSIEGS---RTKQGLANLRYLQVLDLSGNFNITS--GSL-TRLGLANLTNL 232 (299)
Q Consensus 163 ~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~---~p~~~~~~l~~L~~L~Ls~n~~~~~--~~~-~~~~~~~l~~L 232 (299)
+|++.... -..+...+.|+.+.++.|.+... .....+..+++|+.|||..| .++ |.. -...+..+++|
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN--tft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN--TFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc--hhhhHHHHHHHHHhcccchh
Confidence 99986433 23456678999999999987632 22236788999999999999 554 321 12567778899
Q ss_pred cEEECCCCCCCCcc--c-----ccCCCCCCEEeCCCCccCcc----CcccccCCCCCCEEecCCCCC
Q 022302 233 KKLDLGSCGITTIQ--G-----LAKLKNLEALDLSYNYYIHS----SLEGLANLTNLQVLDLSDNQN 288 (299)
Q Consensus 233 ~~L~Ls~n~l~~~~--~-----l~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~l~~N~l 288 (299)
+.|++++|.+..-- . -...++|+.|.+.+|.++.. +...+...+.|+.|+|++|++
T Consensus 244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 99999999987542 1 23468999999999999853 334556789999999999999
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=1.6e-09 Score=71.55 Aligned_cols=59 Identities=42% Similarity=0.573 Sum_probs=49.1
Q ss_pred CCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCC
Q 022302 230 TNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQN 288 (299)
Q Consensus 230 ~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l 288 (299)
++|++|++++|+++..+ .+..+++|++|++++|.++...|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46788888888888766 377888899999999998877777888999999999999875
No 39
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.79 E-value=9.3e-09 Score=62.63 Aligned_cols=42 Identities=38% Similarity=0.735 Sum_probs=29.0
Q ss_pred hHHHHHHHHHhhhhccC-ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEec
Q 022302 37 LETERTALLEIKSFFIS-VSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCN 88 (299)
Q Consensus 37 ~~~~~~aL~~~~~~~~~-~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~C~ 88 (299)
+++|++||++||+++.+ +. ..+.+|+... ..+|| .|.||+|+
T Consensus 1 ~~~d~~aLl~~k~~l~~~~~------~~l~~W~~~~---~~~~C-~W~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNNDPS------GVLSSWNPSS---DSDPC-SWSGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-SC-------CCCTT--TT-----S-CC-CSTTEEE-
T ss_pred CcHHHHHHHHHHHhcccccC------cccccCCCcC---CCCCe-eeccEEeC
Confidence 36899999999999974 42 5789999821 16899 99999995
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.77 E-value=1.7e-10 Score=107.77 Aligned_cols=127 Identities=33% Similarity=0.381 Sum_probs=100.8
Q ss_pred CCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcE
Q 022302 155 QLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKK 234 (299)
Q Consensus 155 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~ 234 (299)
+|...+.++|.+. .+.+++.-++.|+.|+|++|+++.. +.+..+++|++|||++| .+. .+|......+. |+.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN--~L~-~vp~l~~~gc~-L~~ 236 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYN--CLR-HVPQLSMVGCK-LQL 236 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccc--hhc-cccccchhhhh-hee
Confidence 4667788888886 4667788889999999999999853 36889999999999999 443 23323344454 999
Q ss_pred EECCCCCCCCcccccCCCCCCEEeCCCCccCcc-CcccccCCCCCCEEecCCCCCC
Q 022302 235 LDLGSCGITTIQGLAKLKNLEALDLSYNYYIHS-SLEGLANLTNLQVLDLSDNQNL 289 (299)
Q Consensus 235 L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~ 289 (299)
|.+.+|.++....+.++++|+.||+++|-+.+. -.+.+..+..|+.|.|.||++.
T Consensus 237 L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 237 LNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 999999999988899999999999999988763 2234567788999999999884
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=7.6e-10 Score=93.61 Aligned_cols=160 Identities=25% Similarity=0.222 Sum_probs=106.4
Q ss_pred ccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCC-CCcc-chHhhccCCCCcEEeCCCCcCCCcchhhh
Q 022302 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNF-FNDS-ILPYLNTLTSLTTLILSDNSIEGSRTKQG 198 (299)
Q Consensus 121 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~ 198 (299)
.++.+.+|+.|.+.++++...+.. .+++-.+|+.|+++.+. ++.- ..-.+.+++.|+.|+|++|.+........
T Consensus 205 iLs~C~kLk~lSlEg~~LdD~I~~----~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~ 280 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLRLDDPIVN----TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVA 280 (419)
T ss_pred HHHHHHhhhhccccccccCcHHHH----HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHH
Confidence 355677778888888777766554 77777888888887753 3321 22345677888888888887664432212
Q ss_pred hcC-CCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCC-CCCc--ccccCCCCCCEEeCCCCccCccCccc---
Q 022302 199 LAN-LRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCG-ITTI--QGLAKLKNLEALDLSYNYYIHSSLEG--- 271 (299)
Q Consensus 199 ~~~-l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~--~~l~~l~~L~~L~L~~N~l~~~~p~~--- 271 (299)
+.+ -++|+.|++++..-.+....-......+++|.+|||++|. ++.. ..+.+++.|++|.++.|... +|+.
T Consensus 281 V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~ 358 (419)
T KOG2120|consen 281 VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLE 358 (419)
T ss_pred HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeee
Confidence 222 2577888888763323222222455678999999999986 4432 24788899999999888543 5543
Q ss_pred ccCCCCCCEEecCCC
Q 022302 272 LANLTNLQVLDLSDN 286 (299)
Q Consensus 272 l~~l~~L~~L~l~~N 286 (299)
+...|+|.+||+.++
T Consensus 359 l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 359 LNSKPSLVYLDVFGC 373 (419)
T ss_pred eccCcceEEEEeccc
Confidence 467888999998765
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.65 E-value=5.3e-09 Score=96.16 Aligned_cols=155 Identities=39% Similarity=0.433 Sum_probs=86.9
Q ss_pred cCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcC
Q 022302 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN 201 (299)
Q Consensus 122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~ 201 (299)
+..+++|+.|++.+|.+..+.. .+..+++|++|++++|.++... .+..++.|+.|++++|.+.. +. .+..
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~-----~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~-~~--~~~~ 160 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIEN-----LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD-IS--GLES 160 (414)
T ss_pred cccccceeeeeccccchhhccc-----chhhhhcchheecccccccccc--chhhccchhhheeccCcchh-cc--CCcc
Confidence 4455666666666666665543 2455666666666666665422 24455556666666666653 22 3444
Q ss_pred CCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCC----------------------cccccCCCC--CCEE
Q 022302 202 LRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITT----------------------IQGLAKLKN--LEAL 257 (299)
Q Consensus 202 l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~----------------------~~~l~~l~~--L~~L 257 (299)
+..|+.+++++| .....-+.. ...+.+++.+++.+|.+.. ..++..+.. |+.+
T Consensus 161 l~~L~~l~l~~n--~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l 237 (414)
T KOG0531|consen 161 LKSLKLLDLSYN--RIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLREL 237 (414)
T ss_pred chhhhcccCCcc--hhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHH
Confidence 566666666666 332211100 2444555555555555443 333333333 6778
Q ss_pred eCCCCccCccCcccccCCCCCCEEecCCCCCCC
Q 022302 258 DLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLT 290 (299)
Q Consensus 258 ~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g 290 (299)
++++|.+. .+++.+..+..+..+++.+|++..
T Consensus 238 ~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 238 YLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred hcccCccc-cccccccccccccccchhhccccc
Confidence 88888777 344566677778888888887753
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.59 E-value=8.1e-09 Score=94.97 Aligned_cols=129 Identities=37% Similarity=0.459 Sum_probs=104.9
Q ss_pred CCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCC
Q 022302 123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL 202 (299)
Q Consensus 123 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l 202 (299)
..+..++.+++..|.+..... .+..+++|+.|++..|.+... ...+..+++|++|++++|+|+. +. .+..+
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~-----~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~-i~--~l~~l 139 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILN-----HLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITK-LE--GLSTL 139 (414)
T ss_pred HHhHhHHhhccchhhhhhhhc-----ccccccceeeeeccccchhhc-ccchhhhhcchheecccccccc-cc--chhhc
Confidence 356778888899888877433 578899999999999999753 3337789999999999999985 43 46778
Q ss_pred CCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccC
Q 022302 203 RYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYI 265 (299)
Q Consensus 203 ~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~ 265 (299)
+.|+.|++++| ..... ..+..++.|+.+++++|+++.... ...+.+++.+++.+|.+.
T Consensus 140 ~~L~~L~l~~N--~i~~~---~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 140 TLLKELNLSGN--LISDI---SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred cchhhheeccC--cchhc---cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 88999999999 54432 345568999999999999998877 588899999999999876
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.57 E-value=3.5e-08 Score=82.71 Aligned_cols=174 Identities=21% Similarity=0.179 Sum_probs=127.0
Q ss_pred ccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhh-------------ccCCCCcEEeC
Q 022302 119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL-------------NTLTSLTTLIL 185 (299)
Q Consensus 119 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l-------------~~l~~L~~L~L 185 (299)
...+-+|++|+.++||.|.|....|+.+...++.-+.|++|.+++|.+...--..+ .+-|.|++.+.
T Consensus 85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 44677899999999999999998888787888999999999999998753222222 24578999999
Q ss_pred CCCcCCCcchh----hhhcCCCCCCEEECCCCcCCCCCccc--hhhhccCCCCcEEECCCCCCCCcc------cccCCCC
Q 022302 186 SDNSIEGSRTK----QGLANLRYLQVLDLSGNFNITSGSLT--RLGLANLTNLKKLDLGSCGITTIQ------GLAKLKN 253 (299)
Q Consensus 186 ~~n~l~~~~p~----~~~~~l~~L~~L~Ls~n~~~~~~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~------~l~~l~~ 253 (299)
.+|++.. .+. ..+..-.+|+++.+..|.+.-.|... -..+..+.+|+.||+++|.++... .+..++.
T Consensus 165 grNRlen-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~ 243 (388)
T COG5238 165 GRNRLEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL 243 (388)
T ss_pred ccchhcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence 9999873 222 12333368999999999555544321 134566889999999999887543 3667778
Q ss_pred CCEEeCCCCccCccCcccc------cCCCCCCEEecCCCCCCCccC
Q 022302 254 LEALDLSYNYYIHSSLEGL------ANLTNLQVLDLSDNQNLTTLG 293 (299)
Q Consensus 254 L~~L~L~~N~l~~~~p~~l------~~l~~L~~L~l~~N~l~g~ip 293 (299)
|+.|++.+|-++.....++ ...++|..|...+|...|.+-
T Consensus 244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i 289 (388)
T COG5238 244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGII 289 (388)
T ss_pred hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCcee
Confidence 9999999998775433332 145778888888888776553
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=7.2e-08 Score=81.81 Aligned_cols=167 Identities=21% Similarity=0.229 Sum_probs=99.0
Q ss_pred CCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCC
Q 022302 124 PFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLR 203 (299)
Q Consensus 124 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~ 203 (299)
..++++++||.+|.++... .+++.+.++|.|+.|+++.|++...+...-....+|++|.|.+..+.-.-....+..+|
T Consensus 69 ~~~~v~elDL~~N~iSdWs--eI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWS--EIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HhhhhhhhhcccchhccHH--HHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 4567777888888777652 33446677888888888888776433221134457777777777665433333556677
Q ss_pred CCCEEECCCCcCC---CCC-ccch----------------------hhhccCCCCcEEECCCCCCCCcc---cccCCCCC
Q 022302 204 YLQVLDLSGNFNI---TSG-SLTR----------------------LGLANLTNLKKLDLGSCGITTIQ---GLAKLKNL 254 (299)
Q Consensus 204 ~L~~L~Ls~n~~~---~~~-~~~~----------------------~~~~~l~~L~~L~Ls~n~l~~~~---~l~~l~~L 254 (299)
.+++|+++.|... ... .+.+ ..-..++++..+.+..|.+.... ....++.+
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~ 226 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSL 226 (418)
T ss_pred hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcc
Confidence 7777777766111 100 0000 01112466666667666555432 24455666
Q ss_pred CEEeCCCCccCcc-CcccccCCCCCCEEecCCCCCCCcc
Q 022302 255 EALDLSYNYYIHS-SLEGLANLTNLQVLDLSDNQNLTTL 292 (299)
Q Consensus 255 ~~L~L~~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~g~i 292 (299)
.-|+|+.|++... .-+.+..+++|+.|.+.+|++...+
T Consensus 227 ~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 227 SCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 6777777777642 2356677788888888888776544
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.45 E-value=1e-07 Score=94.37 Aligned_cols=135 Identities=28% Similarity=0.297 Sum_probs=65.1
Q ss_pred hcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccC
Q 022302 150 FGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANL 229 (299)
Q Consensus 150 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l 229 (299)
|..++.|+.|||++|.=-+.+|..++++-+|++|++++..+. .+|. .+.++..|.+|++..+ .....++ .....+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~-~l~~Lk~L~~Lnl~~~--~~l~~~~-~i~~~L 641 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPS-GLGNLKKLIYLNLEVT--GRLESIP-GILLEL 641 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccch-HHHHHHhhheeccccc--ccccccc-chhhhc
Confidence 445555555555554433445555555555555555555554 3444 4555555555555544 3222222 333335
Q ss_pred CCCcEEECCCCCCCCcc----cccCCCCCCEE--------------------------eCCCCccCccCcccccCCCCCC
Q 022302 230 TNLKKLDLGSCGITTIQ----GLAKLKNLEAL--------------------------DLSYNYYIHSSLEGLANLTNLQ 279 (299)
Q Consensus 230 ~~L~~L~Ls~n~l~~~~----~l~~l~~L~~L--------------------------~L~~N~l~~~~p~~l~~l~~L~ 279 (299)
++|++|.+......... .+..+.+|+.+ .+.++... ..+..+..+.+|+
T Consensus 642 ~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~ 720 (889)
T KOG4658|consen 642 QSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLE 720 (889)
T ss_pred ccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcc
Confidence 55555555333211100 12222222222 22222222 3455667788888
Q ss_pred EEecCCCCCCC
Q 022302 280 VLDLSDNQNLT 290 (299)
Q Consensus 280 ~L~l~~N~l~g 290 (299)
.|.+.++.+..
T Consensus 721 ~L~i~~~~~~e 731 (889)
T KOG4658|consen 721 ELSILDCGISE 731 (889)
T ss_pred eEEEEcCCCch
Confidence 88888888753
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1e-08 Score=86.90 Aligned_cols=158 Identities=23% Similarity=0.231 Sum_probs=115.7
Q ss_pred CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCc-CCCcchhhhhcCCCC
Q 022302 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNS-IEGSRTKQGLANLRY 204 (299)
Q Consensus 126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~~l~~ 204 (299)
+.|+++||+...++.. .+...+..+.+|+.|.+.++++.+.+...+++-.+|+.|+|+.+. ++.....-.+.+++.
T Consensus 185 sRlq~lDLS~s~it~s---tl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVS---TLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhhHHhhcchhheeHH---HHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence 3588999998877654 222356778999999999999999888899999999999998765 443222235788999
Q ss_pred CCEEECCCCcCCCCCccchhhhcc-CCCCcEEECCCCC--CCC--ccc-ccCCCCCCEEeCCCCc-cCccCcccccCCCC
Q 022302 205 LQVLDLSGNFNITSGSLTRLGLAN-LTNLKKLDLGSCG--ITT--IQG-LAKLKNLEALDLSYNY-YIHSSLEGLANLTN 277 (299)
Q Consensus 205 L~~L~Ls~n~~~~~~~~~~~~~~~-l~~L~~L~Ls~n~--l~~--~~~-l~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~ 277 (299)
|.+|+++.+ ......-.....+ -++|+.|+++++. +.. ... ...+++|.+|||++|. ++......+.+++.
T Consensus 262 L~~LNlsWc--~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~ 339 (419)
T KOG2120|consen 262 LDELNLSWC--FLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY 339 (419)
T ss_pred HhhcCchHh--hccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence 999999998 4332222122333 3689999998875 221 111 5688999999999874 56556667789999
Q ss_pred CCEEecCCCCC
Q 022302 278 LQVLDLSDNQN 288 (299)
Q Consensus 278 L~~L~l~~N~l 288 (299)
|++|.++.|-.
T Consensus 340 L~~lSlsRCY~ 350 (419)
T KOG2120|consen 340 LQHLSLSRCYD 350 (419)
T ss_pred heeeehhhhcC
Confidence 99999998853
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.45 E-value=2.5e-09 Score=100.10 Aligned_cols=125 Identities=29% Similarity=0.286 Sum_probs=89.1
Q ss_pred CccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCC
Q 022302 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ 206 (299)
Q Consensus 127 ~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~ 206 (299)
.|...+++.|.+..... ++.-++.|+.|||++|++.. ...+..+++|++|||+.|++. .+|.-....+. |.
T Consensus 165 ~L~~a~fsyN~L~~mD~-----SLqll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~ 235 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDE-----SLQLLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQ 235 (1096)
T ss_pred hHhhhhcchhhHHhHHH-----HHHHHHHhhhhccchhhhhh--hHHHHhcccccccccccchhc-cccccchhhhh-he
Confidence 46666777777665433 67777888888888888864 236778888888888888887 35542233333 88
Q ss_pred EEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc---cccCCCCCCEEeCCCCccC
Q 022302 207 VLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ---GLAKLKNLEALDLSYNYYI 265 (299)
Q Consensus 207 ~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~N~l~ 265 (299)
.|++.+| .+... ..+.++.+|+.||+++|-+.+.. ++..+..|+.|+|.+|.+-
T Consensus 236 ~L~lrnN--~l~tL---~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 236 LLNLRNN--ALTTL---RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeeccc--HHHhh---hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8888888 54422 35677888888888888776654 4666777888888888764
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.20 E-value=4.6e-06 Score=70.19 Aligned_cols=189 Identities=22% Similarity=0.245 Sum_probs=121.8
Q ss_pred CcEEEeeeCccccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhh-------hHHhhcCCCCCCEEECCCC
Q 022302 92 RRVMQLSLNETIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENR-------AYDSFGSLKQLKMLNLGDN 164 (299)
Q Consensus 92 ~~v~~l~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------~~~~l~~l~~L~~L~Ls~n 164 (299)
..++.++|+++..|.- ...-....+.+-.+|+..+++.- ++|...+. +...+.+||+|+..+||.|
T Consensus 30 d~~~evdLSGNtigtE------A~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 30 DELVEVDLSGNTIGTE------AMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred cceeEEeccCCcccHH------HHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 4678888888444310 01111234556677888887764 33332221 2235678899999999999
Q ss_pred CCCccchHh----hccCCCCcEEeCCCCcCCC----cchh--------hhhcCCCCCCEEECCCCcCCCCC-c--cchhh
Q 022302 165 FFNDSILPY----LNTLTSLTTLILSDNSIEG----SRTK--------QGLANLRYLQVLDLSGNFNITSG-S--LTRLG 225 (299)
Q Consensus 165 ~l~~~~p~~----l~~l~~L~~L~L~~n~l~~----~~p~--------~~~~~l~~L~~L~Ls~n~~~~~~-~--~~~~~ 225 (299)
.|....|+. ++.-+.|++|.+++|.+.- .+.. .-..+-|.|+.+..+.| .+.. . .....
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN--Rlengs~~~~a~~ 180 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN--RLENGSKELSAAL 180 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc--hhccCcHHHHHHH
Confidence 887665554 4566789999999887641 1110 01234578999999988 4432 1 11123
Q ss_pred hccCCCCcEEECCCCCCCCc--c-----cccCCCCCCEEeCCCCccCcc----CcccccCCCCCCEEecCCCCCC
Q 022302 226 LANLTNLKKLDLGSCGITTI--Q-----GLAKLKNLEALDLSYNYYIHS----SLEGLANLTNLQVLDLSDNQNL 289 (299)
Q Consensus 226 ~~~l~~L~~L~Ls~n~l~~~--~-----~l~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~l~~N~l~ 289 (299)
+..-.+|+.+.+..|.+... . .+..+.+|+.||+++|-++-. +...+..++.|+.|.+..|-++
T Consensus 181 l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 181 LESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 33445888999999988643 2 366788999999999988743 3345567888999999988775
No 50
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.19 E-value=1.4e-06 Score=86.60 Aligned_cols=114 Identities=28% Similarity=0.285 Sum_probs=74.8
Q ss_pred cccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhh
Q 022302 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL 199 (299)
Q Consensus 120 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 199 (299)
..|..++.|+.|||++|.-.+..|. .++.+-+||+|+++...++ .+|..++++..|.+|++..+.....++. ..
T Consensus 565 ~ff~~m~~LrVLDLs~~~~l~~LP~----~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~ 638 (889)
T KOG4658|consen 565 EFFRSLPLLRVLDLSGNSSLSKLPS----SIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPG-IL 638 (889)
T ss_pred HHHhhCcceEEEECCCCCccCcCCh----HHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccc-hh
Confidence 3477788888888888766666676 7788888888888888877 5777888888888888877765544432 55
Q ss_pred cCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCC
Q 022302 200 ANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSC 240 (299)
Q Consensus 200 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n 240 (299)
..+.+|++|.+...........- ..+..+.+|+.+.....
T Consensus 639 ~~L~~Lr~L~l~~s~~~~~~~~l-~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 639 LELQSLRVLRLPRSALSNDKLLL-KELENLEHLENLSITIS 678 (889)
T ss_pred hhcccccEEEeeccccccchhhH-Hhhhcccchhhheeecc
Confidence 56788888877665212222222 33445555555555333
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.18 E-value=3e-06 Score=68.27 Aligned_cols=102 Identities=30% Similarity=0.298 Sum_probs=47.2
Q ss_pred CCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcE
Q 022302 155 QLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKK 234 (299)
Q Consensus 155 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~ 234 (299)
....+||+.|.+.. -..|..++.|.+|.+++|+|+. +.+..-..+++|..|.+.+|.+.-.|.+. .+..|++|++
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~LtnNsi~~l~dl~--pLa~~p~L~~ 117 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLILTNNSIQELGDLD--PLASCPKLEY 117 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCccee-eccchhhhccccceEEecCcchhhhhhcc--hhccCCccce
Confidence 34445555555431 1223444555555555555553 22212233445555555555333333332 3445555555
Q ss_pred EECCCCCCCCcc-----cccCCCCCCEEeCCC
Q 022302 235 LDLGSCGITTIQ-----GLAKLKNLEALDLSY 261 (299)
Q Consensus 235 L~Ls~n~l~~~~-----~l~~l~~L~~L~L~~ 261 (299)
|.+-+|..+... .+..+++|+.||++.
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 555555544433 144555555555543
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.15 E-value=2.1e-06 Score=52.31 Aligned_cols=36 Identities=47% Similarity=0.522 Sum_probs=19.9
Q ss_pred CCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCC
Q 022302 253 NLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNL 289 (299)
Q Consensus 253 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 289 (299)
+|++|++++|+++ .+|+.++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4556666666665 34445566666666666666554
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=1.6e-06 Score=73.85 Aligned_cols=177 Identities=23% Similarity=0.195 Sum_probs=118.8
Q ss_pred CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhh-cCCCCCCEEECCCCCCCcc
Q 022302 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSF-GSLKQLKMLNLGDNFFNDS 169 (299)
Q Consensus 92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~ 169 (299)
.+|..+||.+ .++. ..-....+.+++.|+.|+++.|.+...+. .+ ..+.+|+.|-|.+..+.-.
T Consensus 71 ~~v~elDL~~N~iSd---------WseI~~ile~lP~l~~LNls~N~L~s~I~-----~lp~p~~nl~~lVLNgT~L~w~ 136 (418)
T KOG2982|consen 71 TDVKELDLTGNLISD---------WSEIGAILEQLPALTTLNLSCNSLSSDIK-----SLPLPLKNLRVLVLNGTGLSWT 136 (418)
T ss_pred hhhhhhhcccchhcc---------HHHHHHHHhcCccceEeeccCCcCCCccc-----cCcccccceEEEEEcCCCCChh
Confidence 3677777776 3322 11223467899999999999999988765 33 4678999999999887643
Q ss_pred -chHhhccCCCCcEEeCCCCcCCCc---------chh-------------------hhhcCCCCCCEEECCCCcCCCCCc
Q 022302 170 -ILPYLNTLTSLTTLILSDNSIEGS---------RTK-------------------QGLANLRYLQVLDLSGNFNITSGS 220 (299)
Q Consensus 170 -~p~~l~~l~~L~~L~L~~n~l~~~---------~p~-------------------~~~~~l~~L~~L~Ls~n~~~~~~~ 220 (299)
....+..+|.+++|.++.|.+... +.+ ..-.-++++..+.+..|.+.. .
T Consensus 137 ~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~--~ 214 (418)
T KOG2982|consen 137 QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKT--E 214 (418)
T ss_pred hhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccc--h
Confidence 344567788888888888843210 000 001224667767777663222 2
Q ss_pred cchhhhccCCCCcEEECCCCCCCCcc---cccCCCCCCEEeCCCCccCccC----cc--cccCCCCCCEEecC
Q 022302 221 LTRLGLANLTNLKKLDLGSCGITTIQ---GLAKLKNLEALDLSYNYYIHSS----LE--GLANLTNLQVLDLS 284 (299)
Q Consensus 221 ~~~~~~~~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~----p~--~l~~l~~L~~L~l~ 284 (299)
........++.+..|+|+.|++..+. .+..+++|..|++++|.+...+ +. .++.+++++.|+=+
T Consensus 215 s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 215 SSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 22234555677889999999998765 4888999999999999876533 22 34678888877644
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.07 E-value=5.9e-07 Score=67.96 Aligned_cols=135 Identities=23% Similarity=0.154 Sum_probs=75.2
Q ss_pred ccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCE
Q 022302 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQV 207 (299)
Q Consensus 128 L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~ 207 (299)
+..++|+.|.+.-... ....+....+|...+|++|.|....+..-..++.++.|++++|+++ .+|. ++..++.|+.
T Consensus 29 ~h~ldLssc~lm~i~d--avy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPe-E~Aam~aLr~ 104 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIAD--AVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPE-ELAAMPALRS 104 (177)
T ss_pred hhhcccccchhhHHHH--HHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchH-HHhhhHHhhh
Confidence 4456666665543321 1113445556666777777776433333334557777777777777 4666 4777777777
Q ss_pred EECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc-ccCCCCCCEEeCCCCccCccCcc
Q 022302 208 LDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNYYIHSSLE 270 (299)
Q Consensus 208 L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~p~ 270 (299)
|+++.| .+.. .| ..+..+.++..|+..+|.+..++. +...+..-..++.++.+.+.-+.
T Consensus 105 lNl~~N--~l~~-~p-~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 105 LNLRFN--PLNA-EP-RVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred cccccC--cccc-ch-HHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcccccCcc
Confidence 777777 4432 23 344446677777777776655432 11112222233455555554443
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.05 E-value=5.6e-06 Score=50.46 Aligned_cols=36 Identities=44% Similarity=0.552 Sum_probs=24.2
Q ss_pred CCCcEEECCCCCCCCccc-ccCCCCCCEEeCCCCccC
Q 022302 230 TNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNYYI 265 (299)
Q Consensus 230 ~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~l~ 265 (299)
++|++|++++|+++..++ +.++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 356777777777777666 777777777777777766
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.01 E-value=3.7e-05 Score=69.43 Aligned_cols=54 Identities=9% Similarity=-0.004 Sum_probs=27.9
Q ss_pred CCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCC
Q 022302 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDN 188 (299)
Q Consensus 125 l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 188 (299)
+.+++.|++++|.++... . -..+|++|.++++.--..+|..+ .++|++|++++|
T Consensus 51 ~~~l~~L~Is~c~L~sLP-~-------LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP-V-------LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCcccC-C-------CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 456666666666555432 1 12346666666533222344333 245666666666
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.99 E-value=5.4e-07 Score=68.19 Aligned_cols=135 Identities=23% Similarity=0.181 Sum_probs=98.8
Q ss_pred CCCCEEECCCCCCCccchH---hhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCC
Q 022302 154 KQLKMLNLGDNFFNDSILP---YLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLT 230 (299)
Q Consensus 154 ~~L~~L~Ls~n~l~~~~p~---~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~ 230 (299)
..+..++|+++++- .++. .+.....|...+|++|.+. ..|++.-...+.++.|++++| .+. .+| ..+..++
T Consensus 27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~n--eis-dvP-eE~Aam~ 100 (177)
T KOG4579|consen 27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANN--EIS-DVP-EELAAMP 100 (177)
T ss_pred HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchh--hhh-hch-HHHhhhH
Confidence 45677899999875 3444 4445567888899999998 477755566779999999999 554 467 5689999
Q ss_pred CCcEEECCCCCCCCcc-cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCC
Q 022302 231 NLKKLDLGSCGITTIQ-GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKP 295 (299)
Q Consensus 231 ~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~ 295 (299)
.|+.|+++.|.+...+ .+..+.++..|+..+|.+. .+|-.+.--+..-..+++++++.+.-|..
T Consensus 101 aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 101 ALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred HhhhcccccCccccchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccc
Confidence 9999999999988765 3666888999999999887 55544432233344566777777765543
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.99 E-value=1e-05 Score=65.26 Aligned_cols=108 Identities=27% Similarity=0.265 Sum_probs=57.3
Q ss_pred CccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCC
Q 022302 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ 206 (299)
Q Consensus 127 ~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~ 206 (299)
+...+||++|.+.... .|..++.|.+|.+++|+++..-|.--..+++|+.|.|.+|.+.....-..+..+++|+
T Consensus 43 ~~d~iDLtdNdl~~l~------~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD------NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred ccceecccccchhhcc------cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence 4455666666654432 3555666666666666666544443334566666666666655221112355666666
Q ss_pred EEECCCCcCCCCCccchhhhccCCCCcEEECCCC
Q 022302 207 VLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSC 240 (299)
Q Consensus 207 ~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n 240 (299)
+|.+-+|...-........+..+++|+.||.+.-
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 6666666211111111123455666777766553
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.93 E-value=9.5e-06 Score=78.69 Aligned_cols=57 Identities=25% Similarity=0.430 Sum_probs=24.9
Q ss_pred CCCCCEEECCCCCCCc-cchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCC
Q 022302 153 LKQLKMLNLGDNFFND-SILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSG 212 (299)
Q Consensus 153 l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~ 212 (299)
+|.|+.|.+++-.+.. ..-....++|+|..||+++++++. + ..++++++|++|.+.+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l--~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L--SGISRLKNLQVLSMRN 204 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c--HHHhccccHHHHhccC
Confidence 4555555555444321 122223344555555555554442 2 2344445555444443
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.78 E-value=1.5e-05 Score=77.29 Aligned_cols=134 Identities=25% Similarity=0.322 Sum_probs=99.1
Q ss_pred CCCCEEECCCCCC-CccchHhhc-cCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCC
Q 022302 154 KQLKMLNLGDNFF-NDSILPYLN-TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTN 231 (299)
Q Consensus 154 ~~L~~L~Ls~n~l-~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~ 231 (299)
.+|++||+++... +..=|..++ .+|+|+.|.+++-.+...--.....++++|+.||+|+. ..... ..++++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T--nI~nl---~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT--NISNL---SGISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC--CccCc---HHHhcccc
Confidence 6799999988653 222334444 58999999999877654322346788999999999998 44322 57889999
Q ss_pred CcEEECCCCCCCCc---ccccCCCCCCEEeCCCCccCccC--c----ccccCCCCCCEEecCCCCCCCcc
Q 022302 232 LKKLDLGSCGITTI---QGLAKLKNLEALDLSYNYYIHSS--L----EGLANLTNLQVLDLSDNQNLTTL 292 (299)
Q Consensus 232 L~~L~Ls~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~--p----~~l~~l~~L~~L~l~~N~l~g~i 292 (299)
|+.|.+.+=.+... ..+..+++|+.||+|........ . +.-..+|+|+.||.++..+.+.+
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 99999988777653 35889999999999987665322 1 22246899999999999887654
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.68 E-value=1.6e-05 Score=66.62 Aligned_cols=62 Identities=32% Similarity=0.372 Sum_probs=28.4
Q ss_pred hcCCCCCCEEECCCC--CCCccchHhhccCCCCcEEeCCCCcCCC--cchhhhhcCCCCCCEEECCCC
Q 022302 150 FGSLKQLKMLNLGDN--FFNDSILPYLNTLTSLTTLILSDNSIEG--SRTKQGLANLRYLQVLDLSGN 213 (299)
Q Consensus 150 l~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~~l~~L~~L~Ls~n 213 (299)
+..+++|+.|.++.| +.++.++.....+|+|++|+++.|++.. .++ .+..+.+|..|++.+|
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--PLKELENLKSLDLFNC 126 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--hhhhhcchhhhhcccC
Confidence 344555555555555 3333333333344555555555555441 111 1334444555555554
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.58 E-value=3.5e-05 Score=64.51 Aligned_cols=87 Identities=29% Similarity=0.300 Sum_probs=46.7
Q ss_pred ccCCCCCccEEeCCCC--CCCCcchhhhHHhhcCCCCCCEEECCCCCCCcc-chHhhccCCCCcEEeCCCCcCCCcc--h
Q 022302 121 LFHPFEELQRLDLPGN--WFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS-ILPYLNTLTSLTTLILSDNSIEGSR--T 195 (299)
Q Consensus 121 ~~~~l~~L~~L~L~~n--~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~--p 195 (299)
.+-.+++|+.|.++.| .+.+-.+. ....+++|++|+++.|++... --..+..+.+|..|++.+|..+..- -
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~v----l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyr 135 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEV----LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYR 135 (260)
T ss_pred cCCCcchhhhhcccCCccccccccee----hhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHH
Confidence 4455667777777777 44443332 334457777777777776521 1112345566667777766655311 0
Q ss_pred hhhhcCCCCCCEEECC
Q 022302 196 KQGLANLRYLQVLDLS 211 (299)
Q Consensus 196 ~~~~~~l~~L~~L~Ls 211 (299)
...|.-+++|++|+-.
T Consensus 136 e~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 136 EKVFLLLPSLKYLDGC 151 (260)
T ss_pred HHHHHHhhhhcccccc
Confidence 1234445666655543
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.40 E-value=0.0011 Score=60.06 Aligned_cols=119 Identities=15% Similarity=0.132 Sum_probs=73.9
Q ss_pred hhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhcc
Q 022302 149 SFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLAN 228 (299)
Q Consensus 149 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~ 228 (299)
.+..+.++++|++++|.++. +|. -..+|++|.++++.-...+|. .+ .++|+.|++++| .....+|
T Consensus 47 r~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~-~L--P~nLe~L~Ls~C--s~L~sLP------ 111 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPG-SI--PEGLEKLTVCHC--PEISGLP------ 111 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCc-hh--hhhhhheEccCc--ccccccc------
Confidence 55667899999999998874 451 224799999988554334553 33 258899999987 4333344
Q ss_pred CCCCcEEECCCCCCCC---ccc----c---------------cCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCC
Q 022302 229 LTNLKKLDLGSCGITT---IQG----L---------------AKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286 (299)
Q Consensus 229 l~~L~~L~Ls~n~l~~---~~~----l---------------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N 286 (299)
.+|+.|++..+.+.. .|. + .-.++|++|++++|... ..|+.+. .+|+.|+++.|
T Consensus 112 -~sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 112 -ESVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred -cccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 245566665544322 211 0 01246888888877755 3444443 47788888766
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=2.1e-05 Score=66.49 Aligned_cols=102 Identities=32% Similarity=0.318 Sum_probs=66.2
Q ss_pred CCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCC
Q 022302 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRY 204 (299)
Q Consensus 125 l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~ 204 (299)
+.+.+.|++=+|.+..+. ...+++.|+.|.||-|+++.. ..+..|++|++|+|..|.|...-....+.++++
T Consensus 18 l~~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HHHhhhhcccCCCccHHH------HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence 456677777777777652 345677888888888877643 336677788888888887775333335677778
Q ss_pred CCEEECCCCcCCCCCccc----hhhhccCCCCcEEE
Q 022302 205 LQVLDLSGNFNITSGSLT----RLGLANLTNLKKLD 236 (299)
Q Consensus 205 L~~L~Ls~n~~~~~~~~~----~~~~~~l~~L~~L~ 236 (299)
|+.|-|..| .--|.-+ ...+..+|+|+.||
T Consensus 90 Lr~LWL~EN--PCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDEN--PCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccC--CcccccchhHHHHHHHHcccchhcc
Confidence 888877777 3333222 13455567777765
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.23 E-value=0.0011 Score=50.20 Aligned_cols=86 Identities=21% Similarity=0.336 Sum_probs=37.6
Q ss_pred cccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhh
Q 022302 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL 199 (299)
Q Consensus 120 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 199 (299)
..|.++++|+.+.+.. .+..+... .|..+++|+.+.+..+ +.......+.++++|+.+.+.+ .+. .++...|
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~----~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F 77 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGEN----AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAF 77 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TT----TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChh----hccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccc
Confidence 3455666666666653 34444333 5566666666666553 4333334455555666666644 222 2333345
Q ss_pred cCCCCCCEEECCCC
Q 022302 200 ANLRYLQVLDLSGN 213 (299)
Q Consensus 200 ~~l~~L~~L~Ls~n 213 (299)
..+++|+.+++..+
T Consensus 78 ~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN 91 (129)
T ss_dssp TT-TTECEEEETTT
T ss_pred cccccccccccCcc
Confidence 55566666665443
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.00 E-value=0.0023 Score=48.35 Aligned_cols=120 Identities=22% Similarity=0.313 Sum_probs=59.3
Q ss_pred hhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhcc
Q 022302 149 SFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLAN 228 (299)
Q Consensus 149 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~ 228 (299)
.|.++++|+.+.+.. .+.......|..+++|+.+.+..+ +. .++...|..+++++.+.+..+ .. .++...+..
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~~--~~--~i~~~~F~~ 79 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPNN--LK--SIGDNAFSN 79 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETST--T---EE-TTTTTT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeeccccccccccccc--cc--ccccccccc
Confidence 677778888888874 455444556777878888888775 44 355556778878888888654 11 223256677
Q ss_pred CCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCCCC
Q 022302 229 LTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLTNL 278 (299)
Q Consensus 229 l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 278 (299)
+++|+.+++..+ ++... .+..+ +|+.+.+.. .++......|.++++|
T Consensus 80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 888888888654 44332 35565 777777765 3333344555666555
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=4.7e-05 Score=64.50 Aligned_cols=98 Identities=29% Similarity=0.236 Sum_probs=68.3
Q ss_pred CCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc---ccCCCC
Q 022302 177 LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG---LAKLKN 253 (299)
Q Consensus 177 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---l~~l~~ 253 (299)
+.+.+.|+..++.+.+ + +....|+.|++|.|+-| .++.. ..+..|++|+.|.|..|.|.++.. +.++++
T Consensus 18 l~~vkKLNcwg~~L~D-I--sic~kMp~lEVLsLSvN--kIssL---~pl~rCtrLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD-I--SICEKMPLLEVLSLSVN--KISSL---APLQRCTRLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HHHhhhhcccCCCccH-H--HHHHhcccceeEEeecc--ccccc---hhHHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence 4567778888887774 3 25677888888888888 55433 346788888888888888877654 667788
Q ss_pred CCEEeCCCCccCccCcc-----cccCCCCCCEEe
Q 022302 254 LEALDLSYNYYIHSSLE-----GLANLTNLQVLD 282 (299)
Q Consensus 254 L~~L~L~~N~l~~~~p~-----~l~~l~~L~~L~ 282 (299)
|+.|.|..|.-.|.-+. .+..+|+|+.||
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88888888876655443 234566666654
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.75 E-value=0.0005 Score=64.16 Aligned_cols=114 Identities=21% Similarity=0.113 Sum_probs=47.8
Q ss_pred CCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCC-CCCccc----hHhhccCCCCcEEeCCCCc-CCCcchhhh
Q 022302 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDN-FFNDSI----LPYLNTLTSLTTLILSDNS-IEGSRTKQG 198 (299)
Q Consensus 125 l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~----p~~l~~l~~L~~L~L~~n~-l~~~~p~~~ 198 (299)
++.|+.+.+.++.-.... .+......+++|+.|+++.+ ...... ......+.+|+.|+++.+. ++...-...
T Consensus 187 ~~~L~~l~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDD--SLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred CchhhHhhhcccccCChh--hHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 455555555554222110 01114455566666666542 111111 1122234556666666555 333222211
Q ss_pred hcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCC
Q 022302 199 LANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCG 241 (299)
Q Consensus 199 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 241 (299)
...+++|++|.+.++.. .+..--......++.|++|++++|.
T Consensus 265 ~~~c~~L~~L~l~~c~~-lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSN-LTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred HhhCCCcceEccCCCCc-cchhHHHHHHHhcCcccEEeeecCc
Confidence 22255666666554410 1211111333445556666666554
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.19 E-value=0.00012 Score=68.23 Aligned_cols=166 Identities=28% Similarity=0.236 Sum_probs=86.8
Q ss_pred cCCCCCccEEeCCCCCCCCcchhhhHHhhcCC-CCCCEEECCCCCCCcc----chHhhccCCCCcEEeCCCCcCCCc---
Q 022302 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSL-KQLKMLNLGDNFFNDS----ILPYLNTLTSLTTLILSDNSIEGS--- 193 (299)
Q Consensus 122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~--- 193 (299)
+...+.|..|++++|.+.+.....+...+... +.+++|++..|.++.. +...+.....+++++++.|.+...
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~ 190 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLL 190 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhH
Confidence 44556666666666666644433343444443 4555666666655432 333444555666666666665310
Q ss_pred chhhhhc----CCCCCCEEECCCCcCCCCCccc---hhhhccCCC-CcEEECCCCCCCCcc------cccCC-CCCCEEe
Q 022302 194 RTKQGLA----NLRYLQVLDLSGNFNITSGSLT---RLGLANLTN-LKKLDLGSCGITTIQ------GLAKL-KNLEALD 258 (299)
Q Consensus 194 ~p~~~~~----~l~~L~~L~Ls~n~~~~~~~~~---~~~~~~l~~-L~~L~Ls~n~l~~~~------~l~~l-~~L~~L~ 258 (299)
.....+. ...++++|++.++ ..+...- ...+...+. +..+++..|.+.+.. .+..+ ..++.++
T Consensus 191 ~l~~~l~~~~~~~~~le~L~L~~~--~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~ 268 (478)
T KOG4308|consen 191 VLSQALESAASPLSSLETLKLSRC--GVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLD 268 (478)
T ss_pred HHhhhhhhhhcccccHHHHhhhhc--CcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhh
Confidence 0011222 3456666666666 3221100 022333333 555666666655431 13334 5667777
Q ss_pred CCCCccCcc----CcccccCCCCCCEEecCCCCCC
Q 022302 259 LSYNYYIHS----SLEGLANLTNLQVLDLSDNQNL 289 (299)
Q Consensus 259 L~~N~l~~~----~p~~l~~l~~L~~L~l~~N~l~ 289 (299)
++.|.|+.. +.+.+..+++++++.+++|++.
T Consensus 269 l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 269 LSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 777777653 3344556667777777777764
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.97 E-value=0.0033 Score=31.92 Aligned_cols=19 Identities=42% Similarity=0.350 Sum_probs=9.6
Q ss_pred CCEEeCCCCccCccCccccc
Q 022302 254 LEALDLSYNYYIHSSLEGLA 273 (299)
Q Consensus 254 L~~L~L~~N~l~~~~p~~l~ 273 (299)
|++|++++|+++ .+|+.|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4444433
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.84 E-value=0.00023 Score=66.31 Aligned_cols=166 Identities=31% Similarity=0.295 Sum_probs=120.6
Q ss_pred CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhh----ccC-CCCcEEeCCCCcCCCcchh---h
Q 022302 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL----NTL-TSLTTLILSDNSIEGSRTK---Q 197 (299)
Q Consensus 126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l----~~l-~~L~~L~L~~n~l~~~~p~---~ 197 (299)
..+..+.|.+|.+.......+...+...+.|+.|+++.|.+.+..-..+ ... +.+++|++..|.+++..-. .
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 3488899999999988888888899999999999999999975433333 233 5688899988888753221 2
Q ss_pred hhcCCCCCCEEECCCCcCCCCCccc-hhhhc----cCCCCcEEECCCCCCCCcc------cccCCCC-CCEEeCCCCccC
Q 022302 198 GLANLRYLQVLDLSGNFNITSGSLT-RLGLA----NLTNLKKLDLGSCGITTIQ------GLAKLKN-LEALDLSYNYYI 265 (299)
Q Consensus 198 ~~~~l~~L~~L~Ls~n~~~~~~~~~-~~~~~----~l~~L~~L~Ls~n~l~~~~------~l~~l~~-L~~L~L~~N~l~ 265 (299)
.+.....+++++++.|.+...|... ...+. ...++++|.+++|.++... .+...+. +..+++..|++.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 4556789999999999443233211 12333 4678999999999988543 2555555 777999999988
Q ss_pred cc----CcccccCC-CCCCEEecCCCCCCCc
Q 022302 266 HS----SLEGLANL-TNLQVLDLSDNQNLTT 291 (299)
Q Consensus 266 ~~----~p~~l~~l-~~L~~L~l~~N~l~g~ 291 (299)
+. ..+.+..+ ..++.++++.|.|+..
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~ 277 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEK 277 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCcccc
Confidence 54 33455556 7789999999999754
No 72
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.74 E-value=0.005 Score=55.18 Aligned_cols=136 Identities=28% Similarity=0.251 Sum_probs=82.0
Q ss_pred cCCCCCCEEECCCCCC-CccchHhhc-cCCCCcEEeCCCCc-CCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhc
Q 022302 151 GSLKQLKMLNLGDNFF-NDSILPYLN-TLTSLTTLILSDNS-IEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLA 227 (299)
Q Consensus 151 ~~l~~L~~L~Ls~n~l-~~~~p~~l~-~l~~L~~L~L~~n~-l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~ 227 (299)
..+..|+.|+.+++.. +...-..++ +.++|++|-++.++ ++..-....-.+.+.|+.+++........+.+. ..-.
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~-sls~ 369 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA-SLSR 369 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHh-hhcc
Confidence 4567778888877543 333333443 56788888888776 332111112345678888888877444444443 4446
Q ss_pred cCCCCcEEECCCCCC-CCc--cc----ccCCCCCCEEeCCCCccC-ccCcccccCCCCCCEEecCCCC
Q 022302 228 NLTNLKKLDLGSCGI-TTI--QG----LAKLKNLEALDLSYNYYI-HSSLEGLANLTNLQVLDLSDNQ 287 (299)
Q Consensus 228 ~l~~L~~L~Ls~n~l-~~~--~~----l~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~l~~N~ 287 (299)
+++.|+.+.+++|.. ++. .. -.....|+.+.|+++..+ ....+.+..+++|+.+++-+++
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 678888888887763 332 11 234456777777777644 3344556677777777776654
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.54 E-value=0.0046 Score=31.38 Aligned_cols=12 Identities=42% Similarity=0.443 Sum_probs=5.4
Q ss_pred CcEEeCCCCcCC
Q 022302 180 LTTLILSDNSIE 191 (299)
Q Consensus 180 L~~L~L~~n~l~ 191 (299)
|++||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.62 E-value=0.078 Score=49.37 Aligned_cols=157 Identities=28% Similarity=0.238 Sum_probs=92.9
Q ss_pred ccCCCCCccEEeCCCC-CCCCcchhhhHHhhcCCCCCCEEECCCCC-CCccchHhhcc-CCCCcEEeCCCCc-CCCcchh
Q 022302 121 LFHPFEELQRLDLPGN-WFTGIYENRAYDSFGSLKQLKMLNLGDNF-FNDSILPYLNT-LTSLTTLILSDNS-IEGSRTK 196 (299)
Q Consensus 121 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~-l~~L~~L~L~~n~-l~~~~p~ 196 (299)
....+++|+.|+++++ ......+.........+++|+.|+++.+. +++..-..++. +++|++|.+.++. +++..-.
T Consensus 209 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~ 288 (482)
T KOG1947|consen 209 LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLV 288 (482)
T ss_pred HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHH
Confidence 4567789999999873 32222222222244567889999999887 66665555554 7899999987777 5654444
Q ss_pred hhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCC----CCCc-----------c----cccCCCCCCEE
Q 022302 197 QGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCG----ITTI-----------Q----GLAKLKNLEAL 257 (299)
Q Consensus 197 ~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~----l~~~-----------~----~l~~l~~L~~L 257 (299)
.....++.|++|+++++.......+. ....++++++.|.+.... ++.. . ....+++++.+
T Consensus 289 ~i~~~~~~L~~L~l~~c~~~~d~~l~-~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~ 367 (482)
T KOG1947|consen 289 SIAERCPSLRELDLSGCHGLTDSGLE-ALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDL 367 (482)
T ss_pred HHHHhcCcccEEeeecCccchHHHHH-HHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchh
Confidence 45667888999999988322122233 234557766666544332 2111 1 14556777777
Q ss_pred eCCCCccCccC-cccccCCCCC
Q 022302 258 DLSYNYYIHSS-LEGLANLTNL 278 (299)
Q Consensus 258 ~L~~N~l~~~~-p~~l~~l~~L 278 (299)
.+.++...... -..+..++.|
T Consensus 368 ~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 368 SLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred hhhhhhccCcchHHHhcCCccc
Confidence 77776633222 1333444444
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.51 E-value=0.055 Score=25.47 Aligned_cols=11 Identities=36% Similarity=0.631 Sum_probs=3.4
Q ss_pred CcEEECCCCCC
Q 022302 232 LKKLDLGSCGI 242 (299)
Q Consensus 232 L~~L~Ls~n~l 242 (299)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444443
No 76
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=92.16 E-value=0.12 Score=46.64 Aligned_cols=158 Identities=22% Similarity=0.142 Sum_probs=97.5
Q ss_pred CCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCC-CCccchHhhc-cCCCCcEEeCCCCcCCCcc-hhhhhc
Q 022302 124 PFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNF-FNDSILPYLN-TLTSLTTLILSDNSIEGSR-TKQGLA 200 (299)
Q Consensus 124 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~-p~~~~~ 200 (299)
.+..|+.|+.+++...+. ..+.+-..+.++|+.|-++.++ |+..--..++ +.+.|+.+++..+...... ..+.-.
T Consensus 292 ~c~~lq~l~~s~~t~~~d--~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~ 369 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITD--EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSR 369 (483)
T ss_pred hhhHhhhhcccCCCCCch--HHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhcc
Confidence 467888888888755222 1222334567999999999886 4443333343 5788999999887644221 112235
Q ss_pred CCCCCCEEECCCCcCCCCC-ccc-hhhhccCCCCcEEECCCCCCCCcc---cccCCCCCCEEeCCCCccCc--cCccccc
Q 022302 201 NLRYLQVLDLSGNFNITSG-SLT-RLGLANLTNLKKLDLGSCGITTIQ---GLAKLKNLEALDLSYNYYIH--SSLEGLA 273 (299)
Q Consensus 201 ~l~~L~~L~Ls~n~~~~~~-~~~-~~~~~~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~N~l~~--~~p~~l~ 273 (299)
+++.|+.+.++++...... ... ...-..+..|+.+.+.++..+... .+..+++|+.+++-+++-.. .+...-.
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~ 449 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFAT 449 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHh
Confidence 6789999999987221111 111 122345678999999999865543 37778899999988775332 2333334
Q ss_pred CCCCCCEEec
Q 022302 274 NLTNLQVLDL 283 (299)
Q Consensus 274 ~l~~L~~L~l 283 (299)
++|+++...+
T Consensus 450 ~lp~i~v~a~ 459 (483)
T KOG4341|consen 450 HLPNIKVHAY 459 (483)
T ss_pred hCccceehhh
Confidence 6666665433
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.08 E-value=0.047 Score=44.46 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=14.2
Q ss_pred ccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCC
Q 022302 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDN 164 (299)
Q Consensus 128 L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n 164 (299)
++.+|-++..+....-+ -+.+++.++.|.+.++
T Consensus 103 IeaVDAsds~I~~eGle----~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLE----HLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHH----HHhccchhhhheeccc
Confidence 44445544444433222 3344444444444444
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.42 E-value=0.055 Score=27.87 Aligned_cols=12 Identities=33% Similarity=0.565 Sum_probs=4.0
Q ss_pred CCCEEECCCCCC
Q 022302 155 QLKMLNLGDNFF 166 (299)
Q Consensus 155 ~L~~L~Ls~n~l 166 (299)
+|++|++++|++
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 334444444443
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.34 E-value=0.21 Score=26.11 Aligned_cols=14 Identities=36% Similarity=0.484 Sum_probs=7.8
Q ss_pred CCCcEEeCCCCcCC
Q 022302 178 TSLTTLILSDNSIE 191 (299)
Q Consensus 178 ~~L~~L~L~~n~l~ 191 (299)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.34 E-value=0.21 Score=26.11 Aligned_cols=14 Identities=36% Similarity=0.484 Sum_probs=7.8
Q ss_pred CCCcEEeCCCCcCC
Q 022302 178 TSLTTLILSDNSIE 191 (299)
Q Consensus 178 ~~L~~L~L~~n~l~ 191 (299)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.72 E-value=0.0052 Score=51.07 Aligned_cols=85 Identities=15% Similarity=0.139 Sum_probs=57.5
Q ss_pred ccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhc
Q 022302 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA 200 (299)
Q Consensus 121 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 200 (299)
.+..+...+.||++.|++..... .|.-++.|..|+++.|.+. ..|..+++...++.++++.|+.+ ..|. ++.
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~-----n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~~ 108 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGK-----NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK-SQK 108 (326)
T ss_pred hhhccceeeeehhhhhHHHhhcc-----chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc-ccc
Confidence 34555667777777776654433 4555666777777777765 46677777777777777777776 4565 677
Q ss_pred CCCCCCEEECCCC
Q 022302 201 NLRYLQVLDLSGN 213 (299)
Q Consensus 201 ~l~~L~~L~Ls~n 213 (299)
..+.++.+++-+|
T Consensus 109 k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 109 KEPHPKKNEQKKT 121 (326)
T ss_pred ccCCcchhhhccC
Confidence 7777777777777
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.14 E-value=0.098 Score=42.67 Aligned_cols=82 Identities=30% Similarity=0.308 Sum_probs=41.2
Q ss_pred CCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhc-CCCCCCEEECCCCcCCCCCccchhhhccCCCCcE
Q 022302 156 LKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA-NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKK 234 (299)
Q Consensus 156 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~ 234 (299)
++.+|-++..+..+.-+.+.++++++.|.+.+|.--+..--..++ -.++|+.|++++|.....+.+ ..+..+++|+.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL--~~L~~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL--ACLLKLKNLRR 180 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH--HHHHHhhhhHH
Confidence 455666666665555555666666666666666543322111222 235666666666621111111 34555566666
Q ss_pred EECCC
Q 022302 235 LDLGS 239 (299)
Q Consensus 235 L~Ls~ 239 (299)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 65544
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.04 E-value=0.38 Score=25.12 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=10.2
Q ss_pred CCCCEEECCCCCCCcc
Q 022302 154 KQLKMLNLGDNFFNDS 169 (299)
Q Consensus 154 ~~L~~L~Ls~n~l~~~ 169 (299)
++|++|+|++|++...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566777777766643
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.04 E-value=0.38 Score=25.12 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=10.2
Q ss_pred CCCCEEECCCCCCCcc
Q 022302 154 KQLKMLNLGDNFFNDS 169 (299)
Q Consensus 154 ~~L~~L~Ls~n~l~~~ 169 (299)
++|++|+|++|++...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566777777766643
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.88 E-value=0.016 Score=48.23 Aligned_cols=89 Identities=17% Similarity=0.068 Sum_probs=55.4
Q ss_pred hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc-ccc
Q 022302 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ-GLA 249 (299)
Q Consensus 171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~ 249 (299)
...+......+.||++.|++.. +.. .|+-++.+..++++.|.+. ..| ..+.....++.+++..|.++..| ++.
T Consensus 35 v~ei~~~kr~tvld~~s~r~vn-~~~-n~s~~t~~~rl~~sknq~~---~~~-~d~~q~~e~~~~~~~~n~~~~~p~s~~ 108 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRLVN-LGK-NFSILTRLVRLDLSKNQIK---FLP-KDAKQQRETVNAASHKNNHSQQPKSQK 108 (326)
T ss_pred hhhhhccceeeeehhhhhHHHh-hcc-chHHHHHHHHHhccHhhHh---hCh-hhHHHHHHHHHHHhhccchhhCCcccc
Confidence 3455666777777877777652 222 4566667777777777322 234 55566666677777766665543 466
Q ss_pred CCCCCCEEeCCCCccC
Q 022302 250 KLKNLEALDLSYNYYI 265 (299)
Q Consensus 250 ~l~~L~~L~L~~N~l~ 265 (299)
..+.++.+++-.|.++
T Consensus 109 k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccCCcchhhhccCcch
Confidence 6677777777666655
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=80.10 E-value=1.9 Score=23.06 Aligned_cols=14 Identities=36% Similarity=0.499 Sum_probs=7.5
Q ss_pred CccEEeCCCCCCCC
Q 022302 127 ELQRLDLPGNWFTG 140 (299)
Q Consensus 127 ~L~~L~L~~n~l~~ 140 (299)
+|++|+|++|.+..
T Consensus 3 ~L~~LdL~~N~i~~ 16 (28)
T smart00368 3 SLRELDLSNNKLGD 16 (28)
T ss_pred ccCEEECCCCCCCH
Confidence 45555555555543
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=78.45 E-value=2.1 Score=22.61 Aligned_cols=14 Identities=57% Similarity=0.627 Sum_probs=10.1
Q ss_pred CCCCEEecCCCCCC
Q 022302 276 TNLQVLDLSDNQNL 289 (299)
Q Consensus 276 ~~L~~L~l~~N~l~ 289 (299)
++|+.|++++|+|.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 56777777777774
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=77.55 E-value=1.1 Score=42.08 Aligned_cols=66 Identities=30% Similarity=0.203 Sum_probs=36.3
Q ss_pred cCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCC--CCCCcccccCC--CCCCEEeCCCCccCc
Q 022302 200 ANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSC--GITTIQGLAKL--KNLEALDLSYNYYIH 266 (299)
Q Consensus 200 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~l~~l--~~L~~L~L~~N~l~~ 266 (299)
.+.+.+..++|++|++.-...+. ..-...|+|..|+|++| .+....++.++ ..|++|-+.+|.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~s-slsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALS-SLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhh-HHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 34456666677777443333333 33344567777777777 34433333322 346677777776654
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=76.99 E-value=1.7 Score=22.89 Aligned_cols=13 Identities=31% Similarity=0.422 Sum_probs=6.8
Q ss_pred CCCEEeCCCCccC
Q 022302 253 NLEALDLSYNYYI 265 (299)
Q Consensus 253 ~L~~L~L~~N~l~ 265 (299)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555555
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=73.37 E-value=2.9 Score=39.38 Aligned_cols=59 Identities=27% Similarity=0.281 Sum_probs=26.4
Q ss_pred CCCCCCEEECCCCCCCcc--chHhhccCCCCcEEeCCCC--cCCCcchhhhhcC--CCCCCEEECCCC
Q 022302 152 SLKQLKMLNLGDNFFNDS--ILPYLNTLTSLTTLILSDN--SIEGSRTKQGLAN--LRYLQVLDLSGN 213 (299)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L~~n--~l~~~~p~~~~~~--l~~L~~L~Ls~n 213 (299)
+.+.+..++|++|++... +...-..-|+|.+|+|++| .+... + ++.+ ...|++|-+.+|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~--el~K~k~l~Leel~l~GN 280 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-S--ELDKLKGLPLEELVLEGN 280 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-h--hhhhhcCCCHHHeeecCC
Confidence 344555566666655321 1111112355666666666 33221 1 1222 234566666666
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=48.46 E-value=14 Score=19.01 Aligned_cols=13 Identities=46% Similarity=0.493 Sum_probs=10.1
Q ss_pred CCCCCEEecCCCC
Q 022302 275 LTNLQVLDLSDNQ 287 (299)
Q Consensus 275 l~~L~~L~l~~N~ 287 (299)
+++|++|++++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4678888888885
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=35.89 E-value=40 Score=31.52 Aligned_cols=108 Identities=21% Similarity=0.111 Sum_probs=49.8
Q ss_pred CCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhh--hcCCCCCCEEECCCCcCCCCCccchhhhcc-
Q 022302 152 SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG--LANLRYLQVLDLSGNFNITSGSLTRLGLAN- 228 (299)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~--~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~- 228 (299)
.-+.+++++++.|.+....|-.+..-.. -+.++.|+.+......- =..-..+.+++++.| .....+| .....
T Consensus 163 pnpr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n--~~Kddip-~~~n~~ 237 (553)
T KOG4242|consen 163 PNPRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTN--GGKDDIP-RTLNKK 237 (553)
T ss_pred CcchhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccC--CCCccch-hHHHHh
Confidence 3456778888888776655544432111 14444454442211000 011134566677766 4443444 11111
Q ss_pred --CCCCcEEECCCCCCCCcc-----cccCCCCCCEEeCCCCcc
Q 022302 229 --LTNLKKLDLGSCGITTIQ-----GLAKLKNLEALDLSYNYY 264 (299)
Q Consensus 229 --l~~L~~L~Ls~n~l~~~~-----~l~~l~~L~~L~L~~N~l 264 (299)
-.-++.++.+...+.-.. ..++-++++..+++.|..
T Consensus 238 a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 238 AGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred hhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 123555665555443221 133445666666666544
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=30.64 E-value=39 Score=38.53 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=15.8
Q ss_pred CCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCC
Q 022302 133 LPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFF 166 (299)
Q Consensus 133 L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l 166 (299)
|++|+|..+.+. .|..+++|++|+|++|.+
T Consensus 2 LSnN~LstLp~g----~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 2 ISNNKISTIEEG----ICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCcCCccChH----HhccCCCceEEEeeCCcc
Confidence 455555555444 455555555555555544
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.04 E-value=54 Score=37.49 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=26.9
Q ss_pred ECCCCCCCccchHhhccCCCCcEEeCCCCcCC
Q 022302 160 NLGDNFFNDSILPYLNTLTSLTTLILSDNSIE 191 (299)
Q Consensus 160 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 191 (299)
||++|+|+-..+..|..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57899998777778888999999999988765
No 95
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=20.65 E-value=75 Score=23.95 Aligned_cols=13 Identities=8% Similarity=0.462 Sum_probs=5.6
Q ss_pred chhhhhHHHHHHH
Q 022302 11 SFIKFSLMSLIWI 23 (299)
Q Consensus 11 ~~~~~~~~~~~~~ 23 (299)
||..|++++++++
T Consensus 1 RW~l~~iii~~i~ 13 (130)
T PF12273_consen 1 RWVLFAIIIVAIL 13 (130)
T ss_pred CeeeHHHHHHHHH
Confidence 3444544443333
Done!