Query 022302
Match_columns 299
No_of_seqs 345 out of 3543
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 03:16:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 1.4E-34 4.8E-39 254.7 15.9 239 35-296 2-264 (313)
2 3rgz_A Protein brassinosteroid 100.0 3.9E-32 1.3E-36 266.0 16.1 242 31-295 4-266 (768)
3 4eco_A Uncharacterized protein 100.0 3.3E-31 1.1E-35 254.4 14.0 85 34-136 25-115 (636)
4 4ecn_A Leucine-rich repeat pro 100.0 5.1E-30 1.8E-34 252.0 16.1 240 33-296 263-638 (876)
5 4fcg_A Uncharacterized protein 100.0 1.9E-30 6.6E-35 229.8 9.4 243 34-296 22-297 (328)
6 3zyi_A Leucine-rich repeat-con 99.9 9.4E-25 3.2E-29 201.3 20.3 196 81-294 55-260 (452)
7 2o6q_A Variable lymphocyte rec 99.9 1.6E-24 5.5E-29 186.4 18.0 205 77-292 3-221 (270)
8 3rgz_A Protein brassinosteroid 99.9 5.5E-25 1.9E-29 215.4 16.0 171 119-296 483-724 (768)
9 3m19_A Variable lymphocyte rec 99.9 2.3E-24 7.8E-29 183.5 17.6 191 77-293 3-196 (251)
10 3zyj_A Leucine-rich repeat-con 99.9 4.9E-24 1.7E-28 195.9 20.5 193 81-291 44-246 (440)
11 1ogq_A PGIP-2, polygalacturona 99.9 2.5E-25 8.7E-30 195.6 11.4 169 118-295 117-287 (313)
12 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-23 4.7E-28 181.8 16.6 180 93-291 33-216 (285)
13 3rfs_A Internalin B, repeat mo 99.9 6.8E-23 2.3E-27 176.4 19.7 180 92-294 41-223 (272)
14 2o6q_A Variable lymphocyte rec 99.9 1.7E-22 5.7E-27 173.8 21.4 137 121-265 80-218 (270)
15 2z66_A Variable lymphocyte rec 99.9 2.6E-23 8.8E-28 181.9 15.4 201 79-295 7-242 (306)
16 4fcg_A Uncharacterized protein 99.9 1E-23 3.4E-28 186.6 12.9 165 119-289 143-314 (328)
17 3o6n_A APL1; leucine-rich repe 99.9 7.5E-23 2.6E-27 184.9 15.7 163 120-290 87-286 (390)
18 1ozn_A Reticulon 4 receptor; N 99.9 2.3E-22 7.9E-27 174.1 16.9 182 92-292 56-241 (285)
19 3oja_B Anopheles plasmodium-re 99.9 2E-22 6.7E-27 192.0 16.5 163 120-290 93-292 (597)
20 3v47_A TOLL-like receptor 5B a 99.9 5E-22 1.7E-26 182.8 17.7 126 84-213 14-164 (455)
21 2o6s_A Variable lymphocyte rec 99.9 1.8E-22 6E-27 166.8 12.6 156 126-296 28-185 (208)
22 2z80_A TOLL-like receptor 2, v 99.9 5.5E-23 1.9E-27 183.5 9.4 199 76-294 27-240 (353)
23 2id5_A Lingo-1, leucine rich r 99.9 5E-22 1.7E-26 184.1 16.1 196 81-295 12-219 (477)
24 3rfs_A Internalin B, repeat mo 99.9 3.1E-22 1.1E-26 172.3 13.3 177 92-296 63-242 (272)
25 3zyj_A Leucine-rich repeat-con 99.9 1.7E-21 5.7E-26 178.9 18.1 184 92-295 88-274 (440)
26 1xku_A Decorin; proteoglycan, 99.9 3E-21 1E-25 170.5 19.1 195 79-295 31-258 (330)
27 3zyi_A Leucine-rich repeat-con 99.9 1.8E-21 6.1E-26 179.3 17.9 184 92-295 99-285 (452)
28 2z66_A Variable lymphocyte rec 99.9 8.5E-22 2.9E-26 172.2 13.8 164 121-291 96-263 (306)
29 2z62_A TOLL-like receptor 4, v 99.9 2E-21 6.9E-26 167.4 15.8 183 93-294 29-242 (276)
30 2z81_A CD282 antigen, TOLL-lik 99.9 3.3E-22 1.1E-26 188.3 11.6 192 78-290 3-210 (549)
31 2ft3_A Biglycan; proteoglycan, 99.9 2.9E-21 1E-25 170.8 16.6 191 79-291 33-279 (332)
32 2z62_A TOLL-like receptor 4, v 99.9 2.5E-21 8.5E-26 166.8 14.6 157 126-290 28-191 (276)
33 1p9a_G Platelet glycoprotein I 99.9 1E-20 3.6E-25 164.3 18.3 161 117-289 46-208 (290)
34 1p9a_G Platelet glycoprotein I 99.9 8.3E-21 2.8E-25 165.0 17.6 159 126-296 31-191 (290)
35 3v47_A TOLL-like receptor 5B a 99.9 4.5E-21 1.5E-25 176.4 16.8 176 117-296 94-367 (455)
36 1wwl_A Monocyte differentiatio 99.9 1.7E-21 5.8E-26 171.0 12.3 160 123-294 118-291 (312)
37 2xwt_C Thyrotropin receptor; s 99.9 2.4E-21 8E-26 163.5 12.2 183 92-295 31-223 (239)
38 1wwl_A Monocyte differentiatio 99.9 1.5E-21 5.2E-26 171.3 11.4 157 126-291 149-311 (312)
39 3t6q_A CD180 antigen; protein- 99.9 5.9E-21 2E-25 181.8 15.6 169 120-295 344-519 (606)
40 3j0a_A TOLL-like receptor 5; m 99.8 6.8E-21 2.3E-25 188.2 14.3 197 81-296 15-224 (844)
41 3t6q_A CD180 antigen; protein- 99.8 3.9E-20 1.3E-24 176.2 18.6 181 93-290 255-463 (606)
42 3oja_A Leucine-rich immune mol 99.8 6.1E-21 2.1E-25 177.4 12.6 157 122-296 76-233 (487)
43 3m19_A Variable lymphocyte rec 99.8 6.3E-20 2.2E-24 155.9 17.6 160 126-296 14-175 (251)
44 4ecn_A Leucine-rich repeat pro 99.8 3.4E-21 1.2E-25 189.4 11.0 165 119-294 482-662 (876)
45 2z80_A TOLL-like receptor 2, v 99.8 2E-21 6.9E-26 173.3 8.5 183 92-293 76-318 (353)
46 4eco_A Uncharacterized protein 99.8 1.5E-21 5E-26 187.3 8.1 166 119-295 199-395 (636)
47 4glp_A Monocyte differentiatio 99.8 5.7E-21 1.9E-25 167.5 11.0 163 123-290 114-286 (310)
48 1ziw_A TOLL-like receptor 3; i 99.8 3.1E-20 1E-24 179.3 17.2 164 92-274 25-193 (680)
49 2z7x_B TOLL-like receptor 1, v 99.8 4.7E-20 1.6E-24 172.5 17.2 161 123-293 321-485 (520)
50 3oja_B Anopheles plasmodium-re 99.8 5.3E-20 1.8E-24 175.3 17.5 166 116-290 113-338 (597)
51 3o6n_A APL1; leucine-rich repe 99.8 9.4E-20 3.2E-24 164.5 17.9 165 117-290 108-332 (390)
52 3vq2_A TLR4, TOLL-like recepto 99.8 2.7E-20 9.4E-25 177.2 15.0 166 120-293 393-562 (606)
53 3vq2_A TLR4, TOLL-like recepto 99.8 9.2E-21 3.1E-25 180.5 11.6 166 120-295 370-539 (606)
54 2id5_A Lingo-1, leucine rich r 99.8 3.5E-20 1.2E-24 171.6 14.8 165 122-293 124-313 (477)
55 1h6u_A Internalin H; cell adhe 99.8 2.1E-19 7.3E-24 157.3 19.0 168 92-290 63-231 (308)
56 3e6j_A Variable lymphocyte rec 99.8 1.3E-19 4.4E-24 152.0 16.5 135 126-269 40-176 (229)
57 1h6u_A Internalin H; cell adhe 99.8 1.4E-19 4.8E-24 158.5 17.1 170 92-292 41-211 (308)
58 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1E-19 3.6E-24 171.9 17.5 161 123-293 350-514 (562)
59 3e6j_A Variable lymphocyte rec 99.8 1E-19 3.4E-24 152.7 14.7 153 130-293 23-176 (229)
60 4ezg_A Putative uncharacterize 99.8 3E-20 1E-24 152.2 11.1 154 123-290 41-195 (197)
61 3o53_A Protein LRIM1, AGAP0063 99.8 2.6E-20 8.8E-25 163.8 11.4 182 93-296 35-233 (317)
62 2v70_A SLIT-2, SLIT homolog 2 99.8 1.5E-19 5.2E-24 150.7 15.4 134 127-267 33-168 (220)
63 2z63_A TOLL-like receptor 4, v 99.8 3E-20 1E-24 175.4 12.2 167 120-295 367-537 (570)
64 2ft3_A Biglycan; proteoglycan, 99.8 1.9E-19 6.4E-24 159.2 16.2 155 127-289 124-307 (332)
65 2o6s_A Variable lymphocyte rec 99.8 4.9E-19 1.7E-23 146.1 17.6 155 129-294 10-166 (208)
66 1xku_A Decorin; proteoglycan, 99.8 4.5E-19 1.6E-23 156.5 18.4 181 92-295 76-282 (330)
67 1h6t_A Internalin B; cell adhe 99.8 3.2E-19 1.1E-23 155.0 17.2 168 92-290 46-214 (291)
68 4g8a_A TOLL-like receptor 4; l 99.8 1.1E-19 3.8E-24 173.2 15.0 161 126-294 52-219 (635)
69 2v9t_B SLIT homolog 2 protein 99.8 3.2E-19 1.1E-23 148.7 15.3 133 126-266 32-166 (220)
70 2z81_A CD282 antigen, TOLL-lik 99.8 1.4E-19 4.9E-24 170.2 14.3 166 122-293 330-514 (549)
71 4glp_A Monocyte differentiatio 99.8 2.7E-20 9.2E-25 163.1 8.7 164 125-296 90-270 (310)
72 1ziw_A TOLL-like receptor 3; i 99.8 5E-19 1.7E-23 170.8 17.4 170 119-294 398-602 (680)
73 3j0a_A TOLL-like receptor 5; m 99.8 1.9E-19 6.6E-24 177.8 14.7 91 119-213 66-158 (844)
74 1o6v_A Internalin A; bacterial 99.8 9.1E-19 3.1E-23 161.8 18.1 152 121-290 238-389 (466)
75 4fmz_A Internalin; leucine ric 99.8 1.2E-18 4.2E-23 154.6 18.0 156 122-293 173-328 (347)
76 3o53_A Protein LRIM1, AGAP0063 99.8 1E-19 3.6E-24 159.9 10.0 156 126-294 99-256 (317)
77 3oja_A Leucine-rich immune mol 99.8 2E-19 6.9E-24 167.2 12.2 156 125-294 98-256 (487)
78 2v9t_B SLIT homolog 2 protein 99.8 6.9E-19 2.4E-23 146.7 14.1 130 155-288 33-164 (220)
79 2xot_A Amphoterin-induced prot 99.8 2.1E-19 7.2E-24 160.8 11.4 156 126-289 39-202 (361)
80 2z7x_B TOLL-like receptor 1, v 99.8 9.1E-19 3.1E-23 163.8 16.1 140 151-295 321-462 (520)
81 1m9s_A Internalin B; cell inva 99.8 1.7E-18 5.7E-23 164.6 17.3 169 92-291 43-212 (605)
82 4b8c_D Glucose-repressible alc 99.8 1.4E-20 4.9E-25 182.7 3.1 221 36-296 129-361 (727)
83 1h6t_A Internalin B; cell adhe 99.8 2.6E-18 8.9E-23 149.2 16.7 154 122-294 42-195 (291)
84 1xeu_A Internalin C; cellular 99.8 7.5E-19 2.6E-23 150.4 12.9 152 121-291 36-187 (263)
85 1o6v_A Internalin A; bacterial 99.8 4.7E-18 1.6E-22 157.0 19.2 154 122-293 217-370 (466)
86 2z63_A TOLL-like receptor 4, v 99.8 7.4E-19 2.5E-23 165.9 13.9 160 119-287 45-211 (570)
87 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 6.2E-19 2.1E-23 166.6 12.7 137 126-274 52-193 (562)
88 3cvr_A Invasion plasmid antige 99.8 3E-19 1E-23 168.3 10.1 186 81-296 49-250 (571)
89 4ezg_A Putative uncharacterize 99.8 1.4E-18 4.7E-23 142.3 12.3 151 92-266 44-195 (197)
90 4g8a_A TOLL-like receptor 4; l 99.8 1E-18 3.5E-23 166.5 12.0 178 92-289 52-237 (635)
91 2xwt_C Thyrotropin receptor; s 99.8 4.1E-19 1.4E-23 149.7 8.0 160 126-296 31-200 (239)
92 4fmz_A Internalin; leucine ric 99.8 2.8E-17 9.5E-22 145.8 19.6 154 122-290 84-257 (347)
93 3bz5_A Internalin-J, INLJ; leu 99.8 1.8E-17 6.3E-22 152.8 18.4 149 122-293 81-250 (457)
94 2ast_B S-phase kinase-associat 99.8 2E-18 6.8E-23 152.5 11.0 161 121-286 113-282 (336)
95 3bz5_A Internalin-J, INLJ; leu 99.8 2.4E-17 8.1E-22 152.0 18.6 153 122-294 123-282 (457)
96 2v70_A SLIT-2, SLIT homolog 2 99.8 2.3E-17 7.8E-22 137.4 16.7 152 130-292 15-169 (220)
97 2ast_B S-phase kinase-associat 99.8 2.3E-18 7.7E-23 152.1 10.6 160 122-287 89-258 (336)
98 2ca6_A RAN GTPase-activating p 99.8 4E-19 1.4E-23 160.2 5.4 192 92-293 94-320 (386)
99 4ay9_X Follicle-stimulating ho 99.8 2.5E-18 8.5E-23 153.2 10.5 198 79-295 9-220 (350)
100 1m9s_A Internalin B; cell inva 99.8 1.4E-17 4.7E-22 158.3 16.1 153 122-293 39-191 (605)
101 2ell_A Acidic leucine-rich nuc 99.7 5.9E-18 2E-22 134.8 10.8 137 152-295 22-165 (168)
102 2xot_A Amphoterin-induced prot 99.7 1.4E-17 4.6E-22 149.1 13.5 153 129-293 21-179 (361)
103 1w8a_A SLIT protein; signaling 99.7 1.9E-17 6.5E-22 135.0 12.4 130 129-269 11-143 (192)
104 2ca6_A RAN GTPase-activating p 99.7 4.1E-18 1.4E-22 153.6 8.9 166 123-290 91-288 (386)
105 2je0_A Acidic leucine-rich nuc 99.7 2.2E-17 7.5E-22 128.8 9.8 127 153-285 16-149 (149)
106 3goz_A Leucine-rich repeat-con 99.7 7.7E-18 2.6E-22 150.6 8.1 187 92-292 22-241 (362)
107 2ell_A Acidic leucine-rich nuc 99.7 2.8E-17 9.6E-22 130.8 9.9 137 124-270 22-164 (168)
108 3goz_A Leucine-rich repeat-con 99.7 1.7E-17 5.9E-22 148.4 9.7 185 93-290 52-267 (362)
109 2je0_A Acidic leucine-rich nuc 99.7 5.5E-17 1.9E-21 126.5 9.7 128 125-261 16-149 (149)
110 1dce_A Protein (RAB geranylger 99.7 1E-18 3.4E-23 165.1 -0.8 160 123-294 346-551 (567)
111 1xeu_A Internalin C; cellular 99.7 5.8E-17 2E-21 138.7 10.0 149 124-291 17-165 (263)
112 1jl5_A Outer protein YOPM; leu 99.7 1.5E-16 5.3E-21 146.4 12.8 154 122-296 233-418 (454)
113 1w8a_A SLIT protein; signaling 99.7 5.1E-16 1.7E-20 126.5 12.9 152 127-288 30-182 (192)
114 3g06_A SSPH2 (leucine-rich rep 99.7 3.4E-16 1.2E-20 149.1 13.5 83 203-295 221-303 (622)
115 1jl5_A Outer protein YOPM; leu 99.7 1.6E-15 5.5E-20 139.6 17.4 142 126-290 131-291 (454)
116 3cvr_A Invasion plasmid antige 99.7 1E-15 3.5E-20 144.3 16.0 140 126-296 80-226 (571)
117 2o6r_A Variable lymphocyte rec 99.7 1.3E-15 4.5E-20 122.2 13.6 131 128-269 9-141 (177)
118 4b8c_D Glucose-repressible alc 99.7 1.1E-16 3.7E-21 155.5 8.5 158 126-296 173-336 (727)
119 1z7x_W Ribonuclease inhibitor; 99.6 4.5E-17 1.5E-21 149.8 4.3 167 121-291 222-413 (461)
120 2o6r_A Variable lymphocyte rec 99.6 3E-15 1E-19 120.0 14.0 112 126-245 28-139 (177)
121 2wfh_A SLIT homolog 2 protein 99.6 2.3E-15 7.7E-20 122.8 13.1 126 129-266 13-140 (193)
122 1z7x_W Ribonuclease inhibitor; 99.6 1E-16 3.4E-21 147.5 3.7 168 120-290 50-241 (461)
123 1a9n_A U2A', U2A'; complex (nu 99.6 1.1E-15 3.9E-20 122.5 9.3 133 121-265 14-153 (176)
124 2wfh_A SLIT homolog 2 protein 99.6 7.9E-15 2.7E-19 119.5 13.6 111 126-245 31-141 (193)
125 1a9n_A U2A', U2A'; complex (nu 99.6 1.4E-15 4.8E-20 122.0 8.9 133 149-289 14-153 (176)
126 3g06_A SSPH2 (leucine-rich rep 99.6 1.4E-14 4.8E-19 137.9 15.8 60 230-296 221-280 (622)
127 1ds9_A Outer arm dynein; leuci 99.6 8.6E-18 2.9E-22 137.6 -7.4 158 122-290 14-186 (198)
128 1ds9_A Outer arm dynein; leuci 99.6 1.3E-17 4.3E-22 136.6 -8.3 139 149-294 13-158 (198)
129 4ay9_X Follicle-stimulating ho 99.5 1.1E-14 3.8E-19 129.5 7.6 161 126-295 30-196 (350)
130 3un9_A NLR family member X1; l 99.5 6.4E-15 2.2E-19 132.1 5.3 161 126-290 72-253 (372)
131 1dce_A Protein (RAB geranylger 99.5 5.7E-14 2E-18 132.6 11.9 155 119-283 402-567 (567)
132 3g39_A Variable lymphocyte rec 99.5 3.2E-13 1.1E-17 107.6 11.5 106 156-268 11-118 (170)
133 3g39_A Variable lymphocyte rec 99.5 4.1E-13 1.4E-17 107.0 11.1 83 126-213 30-112 (170)
134 2r9u_A Variable lymphocyte rec 99.4 3.4E-13 1.2E-17 107.9 9.8 104 156-266 14-119 (174)
135 2r9u_A Variable lymphocyte rec 99.4 6.9E-13 2.4E-17 106.1 11.5 83 126-213 33-115 (174)
136 3sb4_A Hypothetical leucine ri 99.3 4.7E-12 1.6E-16 111.5 11.6 164 117-290 84-311 (329)
137 3un9_A NLR family member X1; l 99.3 2.6E-13 8.8E-18 121.7 2.8 185 92-289 72-283 (372)
138 3ogk_B Coronatine-insensitive 99.3 3.6E-13 1.2E-17 127.5 3.7 165 123-291 339-528 (592)
139 2ifg_A High affinity nerve gro 99.3 8.5E-12 2.9E-16 110.5 11.9 89 122-218 27-116 (347)
140 3sb4_A Hypothetical leucine ri 99.3 1.2E-11 4.1E-16 108.8 11.5 157 117-283 115-328 (329)
141 3ogk_B Coronatine-insensitive 99.3 4.6E-12 1.6E-16 119.9 8.0 159 123-284 161-350 (592)
142 2ifg_A High affinity nerve gro 99.2 5.5E-11 1.9E-15 105.2 10.8 104 157-267 11-118 (347)
143 2p1m_B Transport inhibitor res 99.2 5.8E-12 2E-16 119.2 2.6 34 229-262 288-324 (594)
144 2p1m_B Transport inhibitor res 99.2 2.7E-12 9.1E-17 121.5 -0.3 132 153-289 371-519 (594)
145 4fdw_A Leucine rich hypothetic 99.1 9.4E-10 3.2E-14 99.4 15.2 162 117-290 171-359 (401)
146 2ra8_A Uncharacterized protein 99.0 3.3E-10 1.1E-14 100.9 4.8 164 122-290 135-321 (362)
147 3rw6_A Nuclear RNA export fact 99.0 1.9E-10 6.4E-15 97.8 3.0 154 78-236 77-257 (267)
148 1io0_A Tropomodulin; LRR prote 98.9 2.2E-09 7.6E-14 86.4 8.1 93 121-213 31-133 (185)
149 4fdw_A Leucine rich hypothetic 98.9 1.8E-08 6.2E-13 91.0 14.4 158 119-286 151-333 (401)
150 2ra8_A Uncharacterized protein 98.8 2.4E-09 8.2E-14 95.3 3.6 154 121-287 167-341 (362)
151 1io0_A Tropomodulin; LRR prote 98.8 1.5E-08 5E-13 81.6 7.2 118 145-265 27-164 (185)
152 3rw6_A Nuclear RNA export fact 98.6 7.7E-09 2.6E-13 87.8 2.2 81 200-283 167-258 (267)
153 3e4g_A ATP synthase subunit S, 98.2 5.6E-07 1.9E-11 71.3 3.6 82 127-213 62-149 (176)
154 1pgv_A TMD-1, tropomodulin TMD 98.1 1.5E-05 5E-10 64.3 9.3 120 121-241 36-168 (197)
155 3e4g_A ATP synthase subunit S, 98.1 2.9E-06 9.9E-11 67.1 4.6 88 154-244 61-154 (176)
156 4fs7_A Uncharacterized protein 97.9 5.5E-05 1.9E-09 67.7 10.3 154 118-284 63-238 (394)
157 4fs7_A Uncharacterized protein 97.9 0.0001 3.5E-09 66.0 11.6 113 117-240 85-218 (394)
158 4gt6_A Cell surface protein; l 97.8 7.9E-05 2.7E-09 66.7 9.2 129 149-288 260-390 (394)
159 4gt6_A Cell surface protein; l 97.7 9.9E-05 3.4E-09 66.1 9.3 134 118-264 257-390 (394)
160 4h09_A Hypothetical leucine ri 97.7 0.00038 1.3E-08 61.7 12.6 128 150-285 213-342 (379)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 0.00016 5.5E-09 58.1 7.8 95 146-240 33-136 (197)
162 4h09_A Hypothetical leucine ri 97.6 0.00056 1.9E-08 60.6 12.1 144 120-276 211-356 (379)
163 3rfe_A Platelet glycoprotein I 97.1 0.0014 4.7E-08 49.0 6.7 34 231-264 32-67 (130)
164 3rfe_A Platelet glycoprotein I 96.5 0.0062 2.1E-07 45.4 6.7 34 156-189 33-66 (130)
165 2lz0_A Uncharacterized protein 41.6 25 0.00087 24.1 3.5 39 119-162 13-51 (100)
166 2lz0_A Uncharacterized protein 31.0 41 0.0014 23.0 3.2 37 149-186 15-51 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.4e-34 Score=254.72 Aligned_cols=239 Identities=24% Similarity=0.353 Sum_probs=148.5
Q ss_pred cchHHHHHHHHHhhhhccCccCCCCCCCCCCCCCCCCCCCCCCCCCC--CCceEecCCC--CcEEEeeeCc-cccc--cc
Q 022302 35 ACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDD--WEGVKCNATT--RRVMQLSLNE-TIKF--NY 107 (299)
Q Consensus 35 ~~~~~~~~aL~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~--w~gv~C~~~~--~~v~~l~l~~-~l~~--~~ 107 (299)
.|.++|++||++||+++.++ ..+.+|.. +.+|| . |.||.|+... ++|+.+++++ .+.+ .+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~-------~~l~~W~~-----~~~~C-~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~ 68 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNP-------TTLSSWLP-----TTDCC-NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI 68 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCC-------GGGTTCCT-----TSCTT-TTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC
T ss_pred CCCHHHHHHHHHHHHhcCCc-------ccccCCCC-----CCCCC-cCCCcceEeCCCCCCceEEEEECCCCCccCCccc
Confidence 58999999999999999766 36789976 56888 7 9999998644 7999999998 6665 33
Q ss_pred cCCCC--------------ccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHh
Q 022302 108 SSGSG--------------SALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY 173 (299)
Q Consensus 108 ~~~~~--------------~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 173 (299)
+.... ......+..++++++|++|++++|.+++..|. .+..+++|++|++++|.+++.+|..
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~ 144 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD----FLSQIKTLVTLDFSYNALSGTLPPS 144 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG----GGGGCTTCCEEECCSSEEESCCCGG
T ss_pred ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH----HHhCCCCCCEEeCCCCccCCcCChH
Confidence 22110 01111223344455555555555555544444 4455555555555555555555555
Q ss_pred hccCCCCcEEeCCCCcCCCcchhhhhcCCC-CCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cccC
Q 022302 174 LNTLTSLTTLILSDNSIEGSRTKQGLANLR-YLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAK 250 (299)
Q Consensus 174 l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~-~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~ 250 (299)
+..+++|++|++++|++++.+|. .+..++ +|++|++++| .+.+.+| ..+..++ |++|++++|.+++.. .+..
T Consensus 145 ~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~~L~~L~L~~N--~l~~~~~-~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~ 219 (313)
T 1ogq_A 145 ISSLPNLVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRN--RLTGKIP-PTFANLN-LAFVDLSRNMLEGDASVLFGS 219 (313)
T ss_dssp GGGCTTCCEEECCSSCCEEECCG-GGGCCCTTCCEEECCSS--EEEEECC-GGGGGCC-CSEEECCSSEEEECCGGGCCT
T ss_pred HhcCCCCCeEECcCCcccCcCCH-HHhhhhhcCcEEECcCC--eeeccCC-hHHhCCc-ccEEECcCCcccCcCCHHHhc
Confidence 55555555555555555544443 444444 5555555555 4444444 4444444 566666666555432 2667
Q ss_pred CCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCCc
Q 022302 251 LKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL 296 (299)
Q Consensus 251 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~~ 296 (299)
+++|+.|++++|.+++.+|. +..+++|++|++++|+++|.+|..+
T Consensus 220 l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 220 DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGG
T ss_pred CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHH
Confidence 77777777777777765555 6777888888888888887777654
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.98 E-value=3.9e-32 Score=266.00 Aligned_cols=242 Identities=28% Similarity=0.330 Sum_probs=194.9
Q ss_pred cccccchHHHHHHHHHhhhhccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEecCCCCcEEEeeeCc-ccccc---
Q 022302 31 HGYKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNE-TIKFN--- 106 (299)
Q Consensus 31 ~~~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~C~~~~~~v~~l~l~~-~l~~~--- 106 (299)
+++++..++|++||++||+++.++ ..+++|.. +.+|| .|.||+|+ .++|+.+++++ .+.|.
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~~~-------~~l~~W~~-----~~~~C-~w~gv~C~--~~~v~~L~L~~~~l~g~~~~ 68 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLPDK-------NLLPDWSS-----NKNPC-TFDGVTCR--DDKVTSIDLSSKPLNVGFSA 68 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCSCT-------TSSTTCCT-----TSCGG-GSTTEEEE--TTEEEEEECTTSCCCEEHHH
T ss_pred CccccCCHHHHHHHHHHHhhCCCc-------ccccCCCC-----CCCCc-CCcceEEC--CCcEEEEECCCCCcCCccCc
Confidence 345566789999999999999866 36789986 56899 99999998 58999999998 77664
Q ss_pred ccCCCCccc------------cccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhh
Q 022302 107 YSSGSGSAL------------LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYL 174 (299)
Q Consensus 107 ~~~~~~~~~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l 174 (299)
+++...... ...+..++++++|++|++++|.+.+.+|.. ..++.+++|++|++++|.+.+.+|..+
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 146 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTL--TSLGSCSGLKFLNVSSNTLDFPGKVSG 146 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGG--GGGGGCTTCCEEECCSSEEECCSSCCS
T ss_pred cChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCCh--HHHhCCCCCCEEECcCCccCCcCCHHH
Confidence 322111110 011256888999999999999998876631 157889999999999999888777765
Q ss_pred -ccCCCCcEEeCCCCcCCCcchhhh---hcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc-ccc
Q 022302 175 -NTLTSLTTLILSDNSIEGSRTKQG---LANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ-GLA 249 (299)
Q Consensus 175 -~~l~~L~~L~L~~n~l~~~~p~~~---~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~ 249 (299)
.++++|++|++++|++++..+. . +.++++|++|++++| .+.+..+ +..+++|++|++++|++++.. .+.
T Consensus 147 ~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n--~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~l~ 220 (768)
T 3rgz_A 147 GLKLNSLEVLDLSANSISGANVV-GWVLSDGCGELKHLAISGN--KISGDVD---VSRCVNLEFLDVSSNNFSTGIPFLG 220 (768)
T ss_dssp CCCCTTCSEEECCSSCCEEETHH-HHHHTTCCTTCCEEECCSS--EEESCCB---CTTCTTCCEEECCSSCCCSCCCBCT
T ss_pred hccCCCCCEEECCCCccCCcCCh-hhhhhccCCCCCEEECCCC--cccccCC---cccCCcCCEEECcCCcCCCCCcccc
Confidence 7889999999999999876554 4 788999999999999 7766655 378899999999999988743 488
Q ss_pred CCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCC
Q 022302 250 KLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKP 295 (299)
Q Consensus 250 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~ 295 (299)
.+++|++|++++|.+++.+|..+..+++|++|++++|++.|.+|..
T Consensus 221 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 266 (768)
T 3rgz_A 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 266 (768)
T ss_dssp TCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC
T ss_pred cCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc
Confidence 9999999999999999999999999999999999999999888764
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=3.3e-31 Score=254.35 Aligned_cols=85 Identities=22% Similarity=0.169 Sum_probs=57.2
Q ss_pred ccchHHHHHHHHHhhhhccCccCCCCC--CCCCCCCCCCCCCCCCCCCCCC---CceEecCCCCcEEEeeeCc-cccccc
Q 022302 34 KACLETERTALLEIKSFFISVSDIGYD--DKILPSWVGEDDGMSSDCCDDW---EGVKCNATTRRVMQLSLNE-TIKFNY 107 (299)
Q Consensus 34 ~~~~~~~~~aL~~~~~~~~~~~~~~~~--~~~~~~W~~~~~~~~~~~c~~w---~gv~C~~~~~~v~~l~l~~-~l~~~~ 107 (299)
.+....|+.||.++++++.+++-...+ .....+|+. +.+|| .| .||+|+. .+||++|+|++ ++.|.+
T Consensus 25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~-----~~~~c-~w~~~~GV~C~~-~~~V~~L~L~~~~l~g~l 97 (636)
T 4eco_A 25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF-----NKELD-MWGAQPGVSLNS-NGRVTGLSLEGFGASGRV 97 (636)
T ss_dssp CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCC-----SSCGG-GTTCCTTEEECT-TCCEEEEECTTSCCEEEE
T ss_pred hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC-----CCCcc-cccCCCCeEEcC-CCCEEEEEecCcccCCcC
Confidence 345567999999999999765300000 012357987 57889 99 9999986 48999999999 877743
Q ss_pred cCCCCccccccccccCCCCCccEEeCCCC
Q 022302 108 SSGSGSALLLNMSLFHPFEELQRLDLPGN 136 (299)
Q Consensus 108 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 136 (299)
+ ..++++++|++|+|++|
T Consensus 98 p-----------~~l~~L~~L~~L~Ls~N 115 (636)
T 4eco_A 98 P-----------DAIGQLTELEVLALGSH 115 (636)
T ss_dssp C-----------GGGGGCTTCCEEESCCG
T ss_pred C-----------hHHhcCccceEEECcCC
Confidence 2 34455555555555555
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=5.1e-30 Score=251.98 Aligned_cols=240 Identities=19% Similarity=0.200 Sum_probs=164.4
Q ss_pred cccchHHHHHHHHHhhhhccCccCCCCCCCCCCCCCCCCCCCCCCC--CCCC------------CceEecCCCCcEEEee
Q 022302 33 YKACLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDC--CDDW------------EGVKCNATTRRVMQLS 98 (299)
Q Consensus 33 ~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~--c~~w------------~gv~C~~~~~~v~~l~ 98 (299)
.+.+..+|++||++||+++.++ +|+..+++...+| | .| .||.|+. .+||+.|+
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~-----------~W~~~~~~~~~~~~~C-~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~ 329 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK-----------NWRYYSGTINNTIHSL-NWNFNKELDMWGDQPGVDLDN-NGRVTGLS 329 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG-----------GCCCCCSSCSSCCCCC-SCCCSSCGGGTTCCTTEEECT-TSCEEEEE
T ss_pred ccccchHHHHHHHHHHHHcCCC-----------CCCcCCCcccccCCcc-ccccccccccccCcCceEecC-CCCEEEEE
Confidence 3456778999999999999655 3654210001234 7 99 9999986 68999999
Q ss_pred eCc-cccccccCCCCcccc-----c-------------------------------------------------------
Q 022302 99 LNE-TIKFNYSSGSGSALL-----L------------------------------------------------------- 117 (299)
Q Consensus 99 l~~-~l~~~~~~~~~~~~~-----~------------------------------------------------------- 117 (299)
|++ ++.|.+++..+.... +
T Consensus 330 Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~ 409 (876)
T 4ecn_A 330 LAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN 409 (876)
T ss_dssp CTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHH
T ss_pred CccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhh
Confidence 999 887754432110000 0
Q ss_pred ------------------------------cccccCCCCCccEEeCCCCCCCC-----------------cchhhhHHhh
Q 022302 118 ------------------------------NMSLFHPFEELQRLDLPGNWFTG-----------------IYENRAYDSF 150 (299)
Q Consensus 118 ------------------------------~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~~~~~l 150 (299)
.|..++++++|++|+|++|.+++ .+|. .+
T Consensus 410 ~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~----~l 485 (876)
T 4ecn_A 410 RNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE----EL 485 (876)
T ss_dssp TCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CC
T ss_pred hCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh----hh
Confidence 23346667777777777777776 2444 55
Q ss_pred c--CCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCc-CCC-cchhhhhcCC-------CCCCEEECCCCcCCCCC
Q 022302 151 G--SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNS-IEG-SRTKQGLANL-------RYLQVLDLSGNFNITSG 219 (299)
Q Consensus 151 ~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~~~~~l-------~~L~~L~Ls~n~~~~~~ 219 (299)
+ ++++|++|+|++|.+.+.+|..++++++|++|++++|+ +++ .+|. .+..+ ++|++|++++| .+.
T Consensus 486 ~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N--~L~- 561 (876)
T 4ecn_A 486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQIFYMGYN--NLE- 561 (876)
T ss_dssp CGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEEECCSS--CCC-
T ss_pred hhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchH-HHHhhhhcccccCCccEEEeeCC--cCC-
Confidence 5 67777777777777777777777777777777777776 665 5554 34433 37777777777 555
Q ss_pred ccchh--hhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCC-CCEEecCCCCCCCccCCCc
Q 022302 220 SLTRL--GLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTN-LQVLDLSDNQNLTTLGKPL 296 (299)
Q Consensus 220 ~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~l~~N~l~g~ip~~~ 296 (299)
.+| . .+..+++|+.|++++|+++..+.+..+++|+.|++++|.++ .+|+.+..+++ |++|++++|++. .+|+.+
T Consensus 562 ~ip-~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~ 638 (876)
T 4ecn_A 562 EFP-ASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIF 638 (876)
T ss_dssp BCC-CHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCC
T ss_pred ccC-ChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhh
Confidence 566 4 67777778888888877776566777777888888888877 77777777777 888888888877 677654
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.9e-30 Score=229.78 Aligned_cols=243 Identities=21% Similarity=0.220 Sum_probs=162.5
Q ss_pred ccchHHHHHHHHHhhhhcc-CccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEecC--------CCCcEEEeeeCc-cc
Q 022302 34 KACLETERTALLEIKSFFI-SVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNA--------TTRRVMQLSLNE-TI 103 (299)
Q Consensus 34 ~~~~~~~~~aL~~~~~~~~-~~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~C~~--------~~~~v~~l~l~~-~l 103 (299)
.....+|++||++||+++. ++. .....|...... ..++| .|.|+.|.. ...+|+.+++++ .+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~------~~~~~w~~~~~~-~~~~~-~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l 93 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRN------RWHSAWRQANSN-NPQIE-TRTGRALKATADLLEDATQPGRVALELRSVPL 93 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCT------THHHHHHHHTTT-CTTSC-CSHHHHHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred cccCchHHHHHHHHHHhccCCch------hhhhhhcccccc-ccccc-ccCCcchhhhHHHHhcccccceeEEEccCCCc
Confidence 3456789999999999884 432 356778411111 46778 999999952 346899999988 55
Q ss_pred cccccCCCCccc------------cccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccch
Q 022302 104 KFNYSSGSGSAL------------LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL 171 (299)
Q Consensus 104 ~~~~~~~~~~~~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 171 (299)
. .++....... ...+..++++++|++|++++|.+. .+|. .+..+++|++|++++|++.+.+|
T Consensus 94 ~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~----~l~~l~~L~~L~L~~n~~~~~~p 167 (328)
T 4fcg_A 94 P-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPA----SIASLNRLRELSIRACPELTELP 167 (328)
T ss_dssp S-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCG----GGGGCTTCCEEEEEEETTCCCCC
T ss_pred h-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcH----HHhcCcCCCEEECCCCCCccccC
Confidence 4 2322211100 011234556666666666666666 3343 56666666666666666666666
Q ss_pred Hhhcc---------CCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCC
Q 022302 172 PYLNT---------LTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGI 242 (299)
Q Consensus 172 ~~l~~---------l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l 242 (299)
..+.. +++|++|++++|+++ .+|. .+..+++|++|++++| .+.+ +| ..+..+++|++|++++|++
T Consensus 168 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~-~l~~l~~L~~L~L~~N--~l~~-l~-~~l~~l~~L~~L~Ls~n~~ 241 (328)
T 4fcg_A 168 EPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA-SIANLQNLKSLKIRNS--PLSA-LG-PAIHHLPKLEELDLRGCTA 241 (328)
T ss_dssp SCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCG-GGGGCTTCCEEEEESS--CCCC-CC-GGGGGCTTCCEEECTTCTT
T ss_pred hhHhhccchhhhccCCCCCEEECcCCCcC-cchH-hhcCCCCCCEEEccCC--CCCc-Cc-hhhccCCCCCEEECcCCcc
Confidence 55543 666777777777666 4564 5777777788888777 5554 44 3577778888888888776
Q ss_pred CCcc--cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCCc
Q 022302 243 TTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL 296 (299)
Q Consensus 243 ~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~~ 296 (299)
.+.. .+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.|.+|+.+
T Consensus 242 ~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp CCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred hhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 6553 36778888888888888888888888888888888888888888888765
No 6
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=9.4e-25 Score=201.28 Aligned_cols=196 Identities=26% Similarity=0.317 Sum_probs=140.0
Q ss_pred CCCceEecCC---------CCcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhh
Q 022302 81 DWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSF 150 (299)
Q Consensus 81 ~w~gv~C~~~---------~~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 150 (299)
.|..|.|... ..+++.|++++ ++.+ +.+..|.++++|++|++++|.+.+..+. .|
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~-----------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~ 119 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQM-----------IQADTFRHLHHLEVLQLGRNSIRQIEVG----AF 119 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSSCCCEECTT----TT
T ss_pred CCcEEEECCCCcCccCCCCCCCccEEECcCCcCce-----------ECHHHcCCCCCCCEEECCCCccCCcChh----hc
Confidence 3567888642 13567777777 5444 4456788888999999999988888776 78
Q ss_pred cCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCC
Q 022302 151 GSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLT 230 (299)
Q Consensus 151 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~ 230 (299)
.++++|++|+|++|.+++..+..+..+++|++|++++|+++ .++...+..+++|++|++++| ...+.++...+..++
T Consensus 120 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~--~~l~~i~~~~~~~l~ 196 (452)
T 3zyi_A 120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGEL--KKLEYISEGAFEGLF 196 (452)
T ss_dssp TTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCC--TTCCEECTTTTTTCT
T ss_pred cCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCC--CCccccChhhccCCC
Confidence 88889999999998888776677888888999999888887 455556778888888888876 455555545677777
Q ss_pred CCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCC
Q 022302 231 NLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGK 294 (299)
Q Consensus 231 ~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~ 294 (299)
+|++|++++|++++.+.+..+++|+.|+|++|.+++..|..+..+++|++|++++|++.+..|.
T Consensus 197 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 260 (452)
T 3zyi_A 197 NLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN 260 (452)
T ss_dssp TCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT
T ss_pred CCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH
Confidence 7777777777777766666666666666666666665565565555555555555555544443
No 7
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.6e-24 Score=186.42 Aligned_cols=205 Identities=22% Similarity=0.257 Sum_probs=151.4
Q ss_pred CCCCCCCceEecCCCCcEEEeeeCc-cccccccCCC-----------CccccccccccCCCCCccEEeCCCCCCCCcchh
Q 022302 77 DCCDDWEGVKCNATTRRVMQLSLNE-TIKFNYSSGS-----------GSALLLNMSLFHPFEELQRLDLPGNWFTGIYEN 144 (299)
Q Consensus 77 ~~c~~w~gv~C~~~~~~v~~l~l~~-~l~~~~~~~~-----------~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 144 (299)
++| .|.|+.|.. ...++.+++++ +++. ++... .....+.+..|.++++|++|++++|.++...+.
T Consensus 3 ~~C-~~~~~~C~c-~~~~~~l~~~~~~l~~-ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~ 79 (270)
T 2o6q_A 3 ALC-KKDGGVCSC-NNNKNSVDCSSKKLTA-IPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79 (270)
T ss_dssp CCB-GGGTCSBEE-ETTTTEEECTTSCCSS-CCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTT
T ss_pred ccC-CCCCCCCEe-CCCCCEEEccCCCCCc-cCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChh
Confidence 567 787777754 22344555555 3332 11111 111223445678888999999999988877665
Q ss_pred hhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchh
Q 022302 145 RAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRL 224 (299)
Q Consensus 145 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~ 224 (299)
.+..+++|++|++++|.+++..+..+..+++|++|++++|++++ +++..+..+++|++|++++| .+.+..+ .
T Consensus 80 ----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n--~l~~~~~-~ 151 (270)
T 2o6q_A 80 ----IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYN--ELQSLPK-G 151 (270)
T ss_dssp ----TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS--CCCCCCT-T
T ss_pred ----hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe-eCHHHhCcCcCCCEEECCCC--cCCccCH-h
Confidence 67888899999999998887766777888899999999998886 44446788899999999988 6554433 5
Q ss_pred hhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCcc
Q 022302 225 GLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTL 292 (299)
Q Consensus 225 ~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~i 292 (299)
.+..+++|++|++++|++++.+. +..+++|++|++++|.+++..+..+..+++|+.|++++|++...-
T Consensus 152 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 67888899999999998887764 778888999999999888666667888889999999999886543
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=5.5e-25 Score=215.39 Aligned_cols=171 Identities=27% Similarity=0.300 Sum_probs=146.6
Q ss_pred ccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhh
Q 022302 119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG 198 (299)
Q Consensus 119 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~ 198 (299)
+..+.++++|++|++++|.+++.+|. .++.+++|++|++++|++++.+|..+..+++|++|++++|.++|.+|...
T Consensus 483 p~~l~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 483 PSGLSNCTNLNWISLSNNRLTGEIPK----WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred CHHHhcCCCCCEEEccCCccCCcCCh----HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 45677888888888988888888887 78888899999999999888888888889999999999998887776521
Q ss_pred ---------------------------------------------------------------------hcCCCCCCEEE
Q 022302 199 ---------------------------------------------------------------------LANLRYLQVLD 209 (299)
Q Consensus 199 ---------------------------------------------------------------------~~~l~~L~~L~ 209 (299)
+..+++|+.|+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld 638 (768)
T 3rgz_A 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638 (768)
T ss_dssp GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE
T ss_pred hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEE
Confidence 22356788999
Q ss_pred CCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCC
Q 022302 210 LSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQ 287 (299)
Q Consensus 210 Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~ 287 (299)
+++| .+.|.+| ..++.+++|+.|++++|++++.+ .++.+++|+.|+|++|+++|.+|+.++.+++|++|++++|+
T Consensus 639 Ls~N--~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 639 MSYN--MLSGYIP-KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CCSS--CCBSCCC-GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred CcCC--cccccCC-HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 9999 8888888 78899999999999999998754 38899999999999999999999999999999999999999
Q ss_pred CCCccCCCc
Q 022302 288 NLTTLGKPL 296 (299)
Q Consensus 288 l~g~ip~~~ 296 (299)
++|.||+.-
T Consensus 716 l~g~iP~~~ 724 (768)
T 3rgz_A 716 LSGPIPEMG 724 (768)
T ss_dssp EEEECCSSS
T ss_pred ccccCCCch
Confidence 999999753
No 9
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=2.3e-24 Score=183.49 Aligned_cols=191 Identities=25% Similarity=0.286 Sum_probs=160.8
Q ss_pred CCCCCCCceEecCCCCcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCC
Q 022302 77 DCCDDWEGVKCNATTRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQ 155 (299)
Q Consensus 77 ~~c~~w~gv~C~~~~~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~ 155 (299)
+|+ .|.|..|.. ....+++++ ++.. + +. .+ .+++++|++++|.+.+..+. .+..+++
T Consensus 3 ~Cp-~~~gC~C~~---~~~~l~~~~~~l~~-~----------p~-~~--~~~l~~L~L~~n~l~~~~~~----~~~~l~~ 60 (251)
T 3m19_A 3 TCE-TVTGCTCNE---GKKEVDCQGKSLDS-V----------PS-GI--PADTEKLDLQSTGLATLSDA----TFRGLTK 60 (251)
T ss_dssp -CH-HHHSSEEEG---GGTEEECTTCCCSS-C----------CS-CC--CTTCCEEECTTSCCCCCCTT----TTTTCTT
T ss_pred cCC-CCCceEcCC---CCeEEecCCCCccc-c----------CC-CC--CCCCCEEEccCCCcCccCHh----HhcCccc
Confidence 466 899999963 233566766 4433 1 11 12 25799999999999999887 8999999
Q ss_pred CCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEE
Q 022302 156 LKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKL 235 (299)
Q Consensus 156 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L 235 (299)
|++|++++|.+++..+..+..+++|++|++++|++++ +++..+..+++|++|++++| .+.+..+ ..+..+++|++|
T Consensus 61 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N--~l~~~~~-~~~~~l~~L~~L 136 (251)
T 3m19_A 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGGN--QLKSLPS-GVFDRLTKLKEL 136 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSS--CCCCCCT-TTTTTCTTCCEE
T ss_pred CCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccc-cChhHhcccCCCCEEEcCCC--cCCCcCh-hHhccCCcccEE
Confidence 9999999999999888889999999999999999995 55557899999999999999 6665444 668899999999
Q ss_pred ECCCCCCCCccc--ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccC
Q 022302 236 DLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG 293 (299)
Q Consensus 236 ~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip 293 (299)
++++|++++.++ +..+++|++|+|++|++++..+..+..+++|++|++++|++.+..+
T Consensus 137 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred ECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence 999999998874 8899999999999999998878889999999999999999987633
No 10
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=4.9e-24 Score=195.86 Aligned_cols=193 Identities=26% Similarity=0.320 Sum_probs=130.0
Q ss_pred CCCceEecCC---------CCcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhh
Q 022302 81 DWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSF 150 (299)
Q Consensus 81 ~w~gv~C~~~---------~~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 150 (299)
.|..|.|... ...++.+++++ .+.+ +.+..|.++++|++|+|++|.+.+..+. .|
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~-----------~~~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~ 108 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQI-----------IKVNSFKHLRHLEILQLSRNHIRTIEIG----AF 108 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCE-----------ECTTTTSSCSSCCEEECCSSCCCEECGG----GG
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCe-----------eCHHHhhCCCCCCEEECCCCcCCccChh----hc
Confidence 3667888642 13455666666 4433 4455678888888888888888887766 77
Q ss_pred cCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCC
Q 022302 151 GSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLT 230 (299)
Q Consensus 151 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~ 230 (299)
.++++|++|+|++|+++...+..+..+++|++|++++|+++. ++...|..+++|++|++++| ...+.++...+..++
T Consensus 109 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~l~~~--~~l~~i~~~~~~~l~ 185 (440)
T 3zyj_A 109 NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGEL--KRLSYISEGAFEGLS 185 (440)
T ss_dssp TTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCC--TTCCEECTTTTTTCS
T ss_pred cCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc-cCHHHhhhCcccCEeCCCCC--CCcceeCcchhhccc
Confidence 888888888888888887666678888888888888888874 55556777777777777776 445555545666677
Q ss_pred CCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCc
Q 022302 231 NLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTT 291 (299)
Q Consensus 231 ~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ 291 (299)
+|++|++++|+++..+.+..+++|+.|+|++|.+++..|..+..+++|++|++++|++.+.
T Consensus 186 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 246 (440)
T 3zyj_A 186 NLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246 (440)
T ss_dssp SCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred ccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE
Confidence 7777777777766666555666666666666666555555555555555555555554443
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=2.5e-25 Score=195.57 Aligned_cols=169 Identities=24% Similarity=0.296 Sum_probs=155.3
Q ss_pred cccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCC-CCcEEeCCCCcCCCcchh
Q 022302 118 NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLT-SLTTLILSDNSIEGSRTK 196 (299)
Q Consensus 118 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~ 196 (299)
.+..+.++++|++|++++|.+.+.+|. .+..+++|++|++++|.+++.+|..+..++ +|++|++++|++++.+|.
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~ 192 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSGTLPP----SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCG----GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG
T ss_pred CCHHHhCCCCCCEEeCCCCccCCcCCh----HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh
Confidence 355788999999999999999998887 889999999999999999999999999998 999999999999987776
Q ss_pred hhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc-cccCCCCCCEEeCCCCccCccCcccccCC
Q 022302 197 QGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ-GLAKLKNLEALDLSYNYYIHSSLEGLANL 275 (299)
Q Consensus 197 ~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 275 (299)
.+..+. |++|++++| .+.+..+ ..+..+++|++|++++|.+++.. .+..+++|++|++++|.+++.+|..+..+
T Consensus 193 -~~~~l~-L~~L~Ls~N--~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 267 (313)
T 1ogq_A 193 -TFANLN-LAFVDLSRN--MLEGDAS-VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267 (313)
T ss_dssp -GGGGCC-CSEEECCSS--EEEECCG-GGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred -HHhCCc-ccEEECcCC--cccCcCC-HHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcC
Confidence 788887 999999999 7777777 78899999999999999998754 47888999999999999999999999999
Q ss_pred CCCCEEecCCCCCCCccCCC
Q 022302 276 TNLQVLDLSDNQNLTTLGKP 295 (299)
Q Consensus 276 ~~L~~L~l~~N~l~g~ip~~ 295 (299)
++|++|++++|+++|.+|+.
T Consensus 268 ~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 268 KFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp TTCCEEECCSSEEEEECCCS
T ss_pred cCCCEEECcCCcccccCCCC
Confidence 99999999999999999986
No 12
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=1.4e-23 Score=181.82 Aligned_cols=180 Identities=24% Similarity=0.217 Sum_probs=122.4
Q ss_pred cEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCC-CCccc
Q 022302 93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNF-FNDSI 170 (299)
Q Consensus 93 ~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~ 170 (299)
.++.+++++ .+.+ +.+..+.++++|++|++++|.+++..+. .+..+++|++|++++|. +....
T Consensus 33 ~l~~L~l~~n~i~~-----------~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~l~~~~ 97 (285)
T 1ozn_A 33 ASQRIFLHGNRISH-----------VPAASFRACRNLTILWLHSNVLARIDAA----AFTGLALLEQLDLSDNAQLRSVD 97 (285)
T ss_dssp TCSEEECTTSCCCE-----------ECTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSCTTCCCCC
T ss_pred CceEEEeeCCcCCc-----------cCHHHcccCCCCCEEECCCCccceeCHh----hcCCccCCCEEeCCCCCCccccC
Confidence 566677766 4433 3344567777777777777777776665 67777777777777776 66555
Q ss_pred hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--c
Q 022302 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--L 248 (299)
Q Consensus 171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l 248 (299)
|..+..+++|++|++++|.+++..+ ..+..+++|++|++++| .+.+..+ ..+..+++|++|++++|++++.+. +
T Consensus 98 ~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n--~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~ 173 (285)
T 1ozn_A 98 PATFHGLGRLHTLHLDRCGLQELGP-GLFRGLAALQYLYLQDN--ALQALPD-DTFRDLGNLTHLFLHGNRISSVPERAF 173 (285)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSS--CCCCCCT-TTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred HHHhcCCcCCCEEECCCCcCCEECH-hHhhCCcCCCEEECCCC--cccccCH-hHhccCCCccEEECCCCcccccCHHHh
Confidence 6667777777777777777775333 35677777777777777 5544333 456677777777777777766553 6
Q ss_pred cCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCc
Q 022302 249 AKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTT 291 (299)
Q Consensus 249 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ 291 (299)
..+++|++|++++|.+++..|..+..+++|++|++++|++++.
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 216 (285)
T 1ozn_A 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred cCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcC
Confidence 6677777777777777766677777777777777777777653
No 13
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=6.8e-23 Score=176.44 Aligned_cols=180 Identities=26% Similarity=0.254 Sum_probs=149.9
Q ss_pred CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc
Q 022302 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (299)
Q Consensus 92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 170 (299)
.+++.+++.+ .+.. ...+..+++|++|++++|.+.+. + .+..+++|++|++++|.+++..
T Consensus 41 ~~L~~L~l~~~~i~~-------------~~~l~~l~~L~~L~l~~n~l~~~-~-----~l~~l~~L~~L~L~~n~l~~~~ 101 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS-------------VQGIQYLPNVRYLALGGNKLHDI-S-----ALKELTNLTYLILTGNQLQSLP 101 (272)
T ss_dssp TTCCEEECTTSCCCC-------------CTTGGGCTTCCEEECTTSCCCCC-G-----GGTTCTTCCEEECTTSCCCCCC
T ss_pred cceeeeeeCCCCccc-------------ccccccCCCCcEEECCCCCCCCc-h-----hhcCCCCCCEEECCCCccCccC
Confidence 3567777776 4332 23477789999999999999874 3 6888999999999999999877
Q ss_pred hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--c
Q 022302 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--L 248 (299)
Q Consensus 171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l 248 (299)
+..+..+++|++|++++|++++ +++..+..+++|++|++++| .+.+..+ ..+..+++|++|++++|++++.++ +
T Consensus 102 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n--~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~ 177 (272)
T 3rfs_A 102 NGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHN--QLQSLPK-GVFDKLTNLTELDLSYNQLQSLPEGVF 177 (272)
T ss_dssp TTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSS--CCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred hhHhcCCcCCCEEECCCCcCCc-cCHHHhccCCCCCEEECCCC--ccCccCH-HHhccCccCCEEECCCCCcCccCHHHh
Confidence 7778899999999999999986 45446889999999999999 6665544 667889999999999999988765 7
Q ss_pred cCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCC
Q 022302 249 AKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGK 294 (299)
Q Consensus 249 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~ 294 (299)
..+++|++|++++|.+++..+..+..+++|++|++++|++.+..|.
T Consensus 178 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 8899999999999999987787889999999999999998887764
No 14
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.7e-22 Score=173.80 Aligned_cols=137 Identities=25% Similarity=0.285 Sum_probs=69.2
Q ss_pred ccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhc
Q 022302 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA 200 (299)
Q Consensus 121 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 200 (299)
.|.++++|++|++++|.+.+..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++++ ++...+.
T Consensus 80 ~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~ 154 (270)
T 2o6q_A 80 IFKELKNLETLWVTDNKLQALPIG----VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFD 154 (270)
T ss_dssp TTSSCTTCCEEECCSSCCCCCCTT----TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTT
T ss_pred hhcCCCCCCEEECCCCcCCcCCHh----HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc-cCHhHcc
Confidence 344555555555555555554443 44555555555555555554444445555555555555555553 3332345
Q ss_pred CCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccC
Q 022302 201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYI 265 (299)
Q Consensus 201 ~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~ 265 (299)
.+++|++|++++| .+.+..+ ..+..+++|++|++++|++++.+. +..+++|+.|++++|.+.
T Consensus 155 ~l~~L~~L~L~~n--~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 155 KLTSLKELRLYNN--QLKRVPE-GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TCTTCCEEECCSS--CCSCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcccceeEecCC--cCcEeCh-hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 5555555555555 3333222 344455555555555555554432 444555555555555544
No 15
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=2.6e-23 Score=181.85 Aligned_cols=201 Identities=24% Similarity=0.321 Sum_probs=111.7
Q ss_pred CCCCCceEecCC---------CCcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcc--hhh-
Q 022302 79 CDDWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIY--ENR- 145 (299)
Q Consensus 79 c~~w~gv~C~~~---------~~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~- 145 (299)
| .|.++.|... ...++.+++++ .+.. ++...+.++++|++|++++|.+.... +..
T Consensus 7 C-~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~-----------i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 74 (306)
T 2z66_A 7 C-SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS-----------LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD 74 (306)
T ss_dssp E-ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCC-----------CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH
T ss_pred e-CCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCc-----------cCHhHhhccccCCEEECCCCccCcccCccccc
Confidence 5 8999999752 13677788877 4432 22233455555555555555554321 110
Q ss_pred ------------------hHHhhcCCCCCCEEECCCCCCCccch-HhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCC
Q 022302 146 ------------------AYDSFGSLKQLKMLNLGDNFFNDSIL-PYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ 206 (299)
Q Consensus 146 ------------------~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~ 206 (299)
+...+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+. .+..+++|+
T Consensus 75 ~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~ 153 (306)
T 2z66_A 75 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLE 153 (306)
T ss_dssp HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT-TTTTCTTCC
T ss_pred ccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh-hcccCcCCC
Confidence 00023444455555555554443322 3445555555555555555433322 455556666
Q ss_pred EEECCCCcCCCCC-ccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEec
Q 022302 207 VLDLSGNFNITSG-SLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDL 283 (299)
Q Consensus 207 ~L~Ls~n~~~~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l 283 (299)
+|++++| .+.+ ..| ..+..+++|++|++++|++++.+ .+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 154 ~L~l~~n--~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 154 VLKMAGN--SFQENFLP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp EEECTTC--EEGGGEEC-SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred EEECCCC--ccccccch-hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence 6666666 4443 233 45566666666666666666553 2566667777777777776555556666677777777
Q ss_pred CCCCCCCccCCC
Q 022302 284 SDNQNLTTLGKP 295 (299)
Q Consensus 284 ~~N~l~g~ip~~ 295 (299)
++|++.+..|..
T Consensus 231 ~~N~l~~~~~~~ 242 (306)
T 2z66_A 231 SLNHIMTSKKQE 242 (306)
T ss_dssp TTSCCCBCSSSS
T ss_pred CCCCCcccCHHH
Confidence 777776665544
No 16
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=1e-23 Score=186.58 Aligned_cols=165 Identities=18% Similarity=0.160 Sum_probs=118.5
Q ss_pred ccccCCCCCccEEeCCCCCCCCcchhhhH-----HhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCc
Q 022302 119 MSLFHPFEELQRLDLPGNWFTGIYENRAY-----DSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGS 193 (299)
Q Consensus 119 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 193 (299)
+..++++++|++|++++|.+.+.+|..+. ..+.++++|++|++++|.++ .+|..++.+++|++|++++|++++
T Consensus 143 p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~- 220 (328)
T 4fcg_A 143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA- 220 (328)
T ss_dssp CGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred cHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence 33567777888888888777776665110 01233777888888888777 567777778888888888888774
Q ss_pred chhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCccc
Q 022302 194 RTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEG 271 (299)
Q Consensus 194 ~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~ 271 (299)
+|. .+..+++|++|++++| ...+.+| ..+..+++|++|++++|++.+.. .+..+++|++|++++|.+.+.+|+.
T Consensus 221 l~~-~l~~l~~L~~L~Ls~n--~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 221 LGP-AIHHLPKLEELDLRGC--TALRNYP-PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp CCG-GGGGCTTCCEEECTTC--TTCCBCC-CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred Cch-hhccCCCCCEEECcCC--cchhhhH-HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 554 5777788888888887 6677776 66777788888888887766543 3677778888888888777788888
Q ss_pred ccCCCCCCEEecCCCCCC
Q 022302 272 LANLTNLQVLDLSDNQNL 289 (299)
Q Consensus 272 l~~l~~L~~L~l~~N~l~ 289 (299)
++++++|+.+++..|.+.
T Consensus 297 l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 297 IAQLPANCIILVPPHLQA 314 (328)
T ss_dssp GGGSCTTCEEECCGGGSC
T ss_pred HhhccCceEEeCCHHHHH
Confidence 888888888877766553
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=7.5e-23 Score=184.91 Aligned_cols=163 Identities=23% Similarity=0.195 Sum_probs=89.4
Q ss_pred cccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhh
Q 022302 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL 199 (299)
Q Consensus 120 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 199 (299)
..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.++...+..+..+++|++|++++|.+.+ +++..+
T Consensus 87 ~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~ 161 (390)
T 3o6n_A 87 YAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTF 161 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTT
T ss_pred hhccCCCCcCEEECCCCCCCcCCHH----HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhc
Confidence 3455566666666666666655554 45566666666666666654333334556666666666666654 332345
Q ss_pred cCCCCCCEEECCCCcCCCCCccchhhhcc-------------------------------------CCCCcEEECCCCCC
Q 022302 200 ANLRYLQVLDLSGNFNITSGSLTRLGLAN-------------------------------------LTNLKKLDLGSCGI 242 (299)
Q Consensus 200 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~-------------------------------------l~~L~~L~Ls~n~l 242 (299)
..+++|++|++++| .+.+... ..+.. .++|+.|++++|.+
T Consensus 162 ~~l~~L~~L~l~~n--~l~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l 238 (390)
T 3o6n_A 162 QATTSLQNLQLSSN--RLTHVDL-SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL 238 (390)
T ss_dssp SSCTTCCEEECCSS--CCSBCCG-GGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCC
T ss_pred cCCCCCCEEECCCC--cCCcccc-ccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCC
Confidence 66666666666666 3322100 00000 11233344444444
Q ss_pred CCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCC
Q 022302 243 TTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLT 290 (299)
Q Consensus 243 ~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g 290 (299)
++.+.+..+++|++|++++|.+++..|..+..+++|++|++++|++.+
T Consensus 239 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (390)
T 3o6n_A 239 TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 286 (390)
T ss_dssp CCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE
T ss_pred cccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc
Confidence 443345556667777777777776666667667777777777776654
No 18
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=2.3e-22 Score=174.07 Aligned_cols=182 Identities=25% Similarity=0.288 Sum_probs=157.1
Q ss_pred CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCC-CCCcchhhhHHhhcCCCCCCEEECCCCCCCcc
Q 022302 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNW-FTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS 169 (299)
Q Consensus 92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 169 (299)
.+++.+++++ .+.+ +.+..+.++++|++|++++|. +....+. .+..+++|++|++++|.+++.
T Consensus 56 ~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~ 120 (285)
T 1ozn_A 56 RNLTILWLHSNVLAR-----------IDAAAFTGLALLEQLDLSDNAQLRSVDPA----TFHGLGRLHTLHLDRCGLQEL 120 (285)
T ss_dssp TTCCEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSCTTCCCCCTT----TTTTCTTCCEEECTTSCCCCC
T ss_pred CCCCEEECCCCccce-----------eCHhhcCCccCCCEEeCCCCCCccccCHH----HhcCCcCCCEEECCCCcCCEE
Confidence 4677888877 4444 345678899999999999997 7777676 789999999999999999988
Q ss_pred chHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--c
Q 022302 170 ILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--G 247 (299)
Q Consensus 170 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~ 247 (299)
.|..+..+++|++|++++|++++ ++...+..+++|++|++++| .+.+..+ ..+..+++|++|++++|.+++.. .
T Consensus 121 ~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n--~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~ 196 (285)
T 1ozn_A 121 GPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGN--RISSVPE-RAFRGLHSLDRLLLHQNRVAHVHPHA 196 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS--CCCEECT-TTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred CHhHhhCCcCCCEEECCCCcccc-cCHhHhccCCCccEEECCCC--cccccCH-HHhcCccccCEEECCCCcccccCHhH
Confidence 88899999999999999999985 55557899999999999999 6664433 67889999999999999998874 4
Q ss_pred ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCcc
Q 022302 248 LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTL 292 (299)
Q Consensus 248 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~i 292 (299)
+..+++|+.|++++|.+++..++.+..+++|++|++++|++....
T Consensus 197 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred ccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence 888999999999999999877788999999999999999987543
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=2e-22 Score=192.04 Aligned_cols=163 Identities=23% Similarity=0.196 Sum_probs=88.5
Q ss_pred cccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhh
Q 022302 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL 199 (299)
Q Consensus 120 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 199 (299)
..|+.+++|++|++++|.+++..+. .|+.+++|++|++++|.+++..+..++.+++|++|++++|.+++..| ..+
T Consensus 93 ~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~ 167 (597)
T 3oja_B 93 YAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTF 167 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTT
T ss_pred HHhcCCCCCCEEECCCCcCCCCCHH----HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh-hhh
Confidence 3455555566666666655555554 45555666666666666554444444555666666666666554322 245
Q ss_pred cCCCCCCEEECCCCcCCCCCccchhhhcc-------------------------------------CCCCcEEECCCCCC
Q 022302 200 ANLRYLQVLDLSGNFNITSGSLTRLGLAN-------------------------------------LTNLKKLDLGSCGI 242 (299)
Q Consensus 200 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~-------------------------------------l~~L~~L~Ls~n~l 242 (299)
..+++|++|++++| .+.+... ..+.. .++|+.|++++|.+
T Consensus 168 ~~l~~L~~L~L~~N--~l~~~~~-~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l 244 (597)
T 3oja_B 168 QATTSLQNLQLSSN--RLTHVDL-SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL 244 (597)
T ss_dssp TTCTTCCEEECTTS--CCSBCCG-GGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCC
T ss_pred hcCCcCcEEECcCC--CCCCcCh-hhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCC
Confidence 55666666666665 3322110 00000 01233333333333
Q ss_pred CCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCC
Q 022302 243 TTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLT 290 (299)
Q Consensus 243 ~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g 290 (299)
++...+..+++|+.|+|++|.+++..|..++.+++|++|++++|++++
T Consensus 245 ~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 292 (597)
T 3oja_B 245 TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 292 (597)
T ss_dssp CCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE
T ss_pred CCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC
Confidence 343345566677777777777776667777777777777777777665
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=5e-22 Score=182.79 Aligned_cols=126 Identities=26% Similarity=0.331 Sum_probs=78.4
Q ss_pred ceEecCCC--------CcEEEeeeCc-cccccccCCCCcc--------------ccccccccCCCCCccEEeCCCCCCCC
Q 022302 84 GVKCNATT--------RRVMQLSLNE-TIKFNYSSGSGSA--------------LLLNMSLFHPFEELQRLDLPGNWFTG 140 (299)
Q Consensus 84 gv~C~~~~--------~~v~~l~l~~-~l~~~~~~~~~~~--------------~~~~~~~~~~l~~L~~L~L~~n~l~~ 140 (299)
.|.|.... .+++.+++++ .+.+..+...... ..+.+..|.++++|++|++++|.+.+
T Consensus 14 ~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~ 93 (455)
T 3v47_A 14 NAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93 (455)
T ss_dssp EEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE
T ss_pred ccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc
Confidence 37776422 4688899988 5554211111100 02234456667777777777777766
Q ss_pred cchhhhHHhhcCCCCCCEEECCCCCCCccchHh--hccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCC
Q 022302 141 IYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGN 213 (299)
Q Consensus 141 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n 213 (299)
..|. .+.++++|++|++++|.+++..+.. +..+++|++|++++|++++..|...+..+++|++|++++|
T Consensus 94 ~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 94 LETG----AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp ECTT----TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred cChh----hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence 6665 6677777777777777776655544 6667777777777777765545433667777777777777
No 21
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.8e-22 Score=166.84 Aligned_cols=156 Identities=24% Similarity=0.231 Sum_probs=123.2
Q ss_pred CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL 205 (299)
Q Consensus 126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L 205 (299)
++|++|++++|.+++..+. .+..+++|++|++++|++++..+..+..+++|++|++++|++++ ++...+..+++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L 102 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNG----VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQL 102 (208)
T ss_dssp TTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred CCCcEEEcCCCccCcCChh----hhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc-cCHhHhcCccCC
Confidence 5788888888888877665 67788888888888888887666667888888888888888885 554467888888
Q ss_pred CEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEec
Q 022302 206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDL 283 (299)
Q Consensus 206 ~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l 283 (299)
++|++++| .+.+..+ ..+..+++|++|++++|++++.+. +..+++|++|++++|.+.+ .+++|+.|++
T Consensus 103 ~~L~L~~N--~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~ 172 (208)
T 2o6s_A 103 KELALNTN--QLQSLPD-GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSE 172 (208)
T ss_dssp CEEECCSS--CCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHH
T ss_pred CEEEcCCC--cCcccCH-hHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHH
Confidence 88888888 6655443 567788888888888888887664 6778888888888887764 3457888888
Q ss_pred CCCCCCCccCCCc
Q 022302 284 SDNQNLTTLGKPL 296 (299)
Q Consensus 284 ~~N~l~g~ip~~~ 296 (299)
+.|+++|.+|+++
T Consensus 173 ~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 173 WINKHSGVVRNSA 185 (208)
T ss_dssp HHHHCTTTBBCTT
T ss_pred HHHhCCceeeccC
Confidence 8888888888754
No 22
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=5.5e-23 Score=183.45 Aligned_cols=199 Identities=26% Similarity=0.326 Sum_probs=158.9
Q ss_pred CCCCCCCCceEecCCC-----------CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcch
Q 022302 76 SDCCDDWEGVKCNATT-----------RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYE 143 (299)
Q Consensus 76 ~~~c~~w~gv~C~~~~-----------~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 143 (299)
...| .|.|+ |+... .+++.+++++ .+.+ +....+.++++|++|++++|.+++..+
T Consensus 27 ~~~C-~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (353)
T 2z80_A 27 SLSC-DRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITY-----------ISNSDLQRCVNLQALVLTSNGINTIEE 93 (353)
T ss_dssp CCEE-CTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred CCCC-CCCeE-eeCCCCCcccccccccccCcEEECCCCcCcc-----------cCHHHhccCCCCCEEECCCCccCccCH
Confidence 4557 89888 76422 2566777766 4443 345568899999999999999999877
Q ss_pred hhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchh-hhhcCCCCCCEEECCCCcCCCCCccc
Q 022302 144 NRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK-QGLANLRYLQVLDLSGNFNITSGSLT 222 (299)
Q Consensus 144 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~~l~~L~~L~Ls~n~~~~~~~~~ 222 (299)
. .+.++++|++|++++|.+++..+..+..+++|++|++++|++++ ++. ..+..+++|++|++++| ...+.++
T Consensus 94 ~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n--~~~~~~~ 166 (353)
T 2z80_A 94 D----SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNM--DTFTKIQ 166 (353)
T ss_dssp T----TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEES--SSCCEEC
T ss_pred h----hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCC--ccccccC
Confidence 6 78999999999999999997766678999999999999999984 554 46889999999999998 5555555
Q ss_pred hhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCC
Q 022302 223 RLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGK 294 (299)
Q Consensus 223 ~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~ 294 (299)
...+..+++|++|++++|++++.. .+..+++|++|++++|.++...+..+..+++|++|++++|++.+..+.
T Consensus 167 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 240 (353)
T 2z80_A 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS 240 (353)
T ss_dssp TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC
T ss_pred HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc
Confidence 467889999999999999998763 488889999999999998743333445689999999999999875443
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=5e-22 Score=184.08 Aligned_cols=196 Identities=26% Similarity=0.295 Sum_probs=159.8
Q ss_pred CCCceEecCC---------CCcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhh
Q 022302 81 DWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSF 150 (299)
Q Consensus 81 ~w~gv~C~~~---------~~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 150 (299)
.|..|.|... ...++.|++++ .+.+ +.+..|.++++|++|++++|.+++..|. .|
T Consensus 12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~-----------~~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~ 76 (477)
T 2id5_A 12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKT-----------LNQDEFASFPHLEELELNENIVSAVEPG----AF 76 (477)
T ss_dssp TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCE-----------ECTTTTTTCTTCCEEECTTSCCCEECTT----TT
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccce-----------ECHhHccCCCCCCEEECCCCccCEeChh----hh
Confidence 4678888642 23566677776 4443 4456788999999999999999998887 88
Q ss_pred cCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCC
Q 022302 151 GSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLT 230 (299)
Q Consensus 151 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~ 230 (299)
.++++|++|++++|.+++..+..+.++++|++|++++|++.+..+ ..+..+++|++|++++| .+.+..+ ..+..++
T Consensus 77 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n--~l~~~~~-~~~~~l~ 152 (477)
T 2id5_A 77 NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSLEVGDN--DLVYISH-RAFSGLN 152 (477)
T ss_dssp TTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEEECCT--TCCEECT-TSSTTCT
T ss_pred hCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCCh-hHccccccCCEEECCCC--ccceeCh-hhccCCC
Confidence 999999999999999987666678899999999999999986444 47899999999999999 6665555 6788899
Q ss_pred CCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCC
Q 022302 231 NLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKP 295 (299)
Q Consensus 231 ~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~ 295 (299)
+|+.|++++|++++.+. +..+++|+.|++++|.+++..+..+..+++|++|++++|++.+.+|+.
T Consensus 153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 219 (477)
T 2id5_A 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219 (477)
T ss_dssp TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT
T ss_pred CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc
Confidence 99999999999888763 788889999999999988877778888888888888888877777654
No 24
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=3.1e-22 Score=172.31 Aligned_cols=177 Identities=24% Similarity=0.233 Sum_probs=154.2
Q ss_pred CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc
Q 022302 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (299)
Q Consensus 92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 170 (299)
.+++.+++++ .+.+ ...+.++++|++|++++|.+++..+. .+..+++|++|++++|++++..
T Consensus 63 ~~L~~L~l~~n~l~~-------------~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~ 125 (272)
T 3rfs_A 63 PNVRYLALGGNKLHD-------------ISALKELTNLTYLILTGNQLQSLPNG----VFDKLTNLKELVLVENQLQSLP 125 (272)
T ss_dssp TTCCEEECTTSCCCC-------------CGGGTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCCCCC
T ss_pred CCCcEEECCCCCCCC-------------chhhcCCCCCCEEECCCCccCccChh----HhcCCcCCCEEECCCCcCCccC
Confidence 4688888887 5544 23678899999999999999998876 7899999999999999999888
Q ss_pred hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--c
Q 022302 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--L 248 (299)
Q Consensus 171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l 248 (299)
+..+..+++|++|++++|++++ +++..+..+++|++|++++| .+.+..+ ..+..+++|++|++++|++++.++ +
T Consensus 126 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n--~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~ 201 (272)
T 3rfs_A 126 DGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYN--QLQSLPE-GVFDKLTQLKDLRLYQNQLKSVPDGVF 201 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS--CCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred HHHhccCCCCCEEECCCCccCc-cCHHHhccCccCCEEECCCC--CcCccCH-HHhcCCccCCEEECCCCcCCccCHHHH
Confidence 8888999999999999999996 55557899999999999999 7776554 678899999999999999998765 7
Q ss_pred cCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCCc
Q 022302 249 AKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL 296 (299)
Q Consensus 249 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~~ 296 (299)
..+++|+.|++++|.+.+. +++|+.+++..|+++|.+|.++
T Consensus 202 ~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 202 DRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp TTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTT
T ss_pred hCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcc
Confidence 8999999999999988854 4578999999999999999875
No 25
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=1.7e-21 Score=178.93 Aligned_cols=184 Identities=23% Similarity=0.247 Sum_probs=148.8
Q ss_pred CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc
Q 022302 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (299)
Q Consensus 92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 170 (299)
.+++.|++++ .+.+ +.+..|.++++|++|++++|.++...+. .+..+++|++|++++|.++...
T Consensus 88 ~~L~~L~Ls~n~i~~-----------i~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~i~~~~ 152 (440)
T 3zyj_A 88 RHLEILQLSRNHIRT-----------IEIGAFNGLANLNTLELFDNRLTTIPNG----AFVYLSKLKELWLRNNPIESIP 152 (440)
T ss_dssp SSCCEEECCSSCCCE-----------ECGGGGTTCSSCCEEECCSSCCSSCCTT----TSCSCSSCCEEECCSCCCCEEC
T ss_pred CCCCEEECCCCcCCc-----------cChhhccCCccCCEEECCCCcCCeeCHh----HhhccccCceeeCCCCcccccC
Confidence 4677788877 4443 4456788899999999999999988776 7889999999999999998777
Q ss_pred hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cc
Q 022302 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GL 248 (299)
Q Consensus 171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l 248 (299)
+..+..+++|++|++++|+..+.++...|..+++|++|++++| .+. .+| .+..+++|++|++++|++++.. .+
T Consensus 153 ~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n--~l~-~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~ 227 (440)
T 3zyj_A 153 SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC--NLR-EIP--NLTPLIKLDELDLSGNHLSAIRPGSF 227 (440)
T ss_dssp TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS--CCS-SCC--CCTTCSSCCEEECTTSCCCEECTTTT
T ss_pred HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC--cCc-ccc--ccCCCcccCEEECCCCccCccChhhh
Confidence 7788889999999999866555677667888999999999998 554 334 4678888999999999888764 37
Q ss_pred cCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCC
Q 022302 249 AKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKP 295 (299)
Q Consensus 249 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~ 295 (299)
..+++|+.|++++|++++..+..+..+++|++|+|++|++++..++.
T Consensus 228 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 274 (440)
T 3zyj_A 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL 274 (440)
T ss_dssp TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT
T ss_pred ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhH
Confidence 78888999999999888888888888888999999998888644443
No 26
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=3e-21 Score=170.51 Aligned_cols=195 Identities=25% Similarity=0.325 Sum_probs=126.9
Q ss_pred CCCCCceEecCC---------CCcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHH
Q 022302 79 CDDWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYD 148 (299)
Q Consensus 79 c~~w~gv~C~~~---------~~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 148 (299)
| .|..+.|... ...++.+++++ .+.+ +....+.++++|++|++++|.+++..|.
T Consensus 31 c-~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~---- 94 (330)
T 1xku_A 31 C-HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE-----------IKDGDFKNLKNLHTLILINNKISKISPG---- 94 (330)
T ss_dssp E-ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC-----------BCTTTTTTCTTCCEEECCSSCCCCBCTT----
T ss_pred C-CCeEEEecCCCccccCccCCCCCeEEECCCCcCCE-----------eChhhhccCCCCCEEECCCCcCCeeCHH----
Confidence 5 8999999742 23566677776 4443 3445678888999999999998888776
Q ss_pred hhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhcc
Q 022302 149 SFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLAN 228 (299)
Q Consensus 149 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~ 228 (299)
.+..+++|++|++++|.++. +|..+. ++|++|++++|++.+ ++...+..+++|++|++++|.+...+..+ ..+..
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~ 169 (330)
T 1xku_A 95 AFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIEN-GAFQG 169 (330)
T ss_dssp TTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCT-TGGGG
T ss_pred HhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccc-cCHhHhcCCccccEEECCCCcCCccCcCh-hhccC
Confidence 78888888888888888773 444332 677777777777764 44445677777777777777222222333 45556
Q ss_pred CCCCcEEECCCCCCCCcc-----------------------cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCC
Q 022302 229 LTNLKKLDLGSCGITTIQ-----------------------GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSD 285 (299)
Q Consensus 229 l~~L~~L~Ls~n~l~~~~-----------------------~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~ 285 (299)
+++|++|++++|.++..+ .+..+++|+.|++++|.+++..+..+..+++|++|++++
T Consensus 170 l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 249 (330)
T 1xku_A 170 MKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249 (330)
T ss_dssp CTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred CCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCC
Confidence 666666666555554432 255556666666666666655555666666666666666
Q ss_pred CCCCCccCCC
Q 022302 286 NQNLTTLGKP 295 (299)
Q Consensus 286 N~l~g~ip~~ 295 (299)
|++. .+|+.
T Consensus 250 N~l~-~lp~~ 258 (330)
T 1xku_A 250 NKLV-KVPGG 258 (330)
T ss_dssp SCCS-SCCTT
T ss_pred CcCc-cCChh
Confidence 6665 45554
No 27
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=1.8e-21 Score=179.32 Aligned_cols=184 Identities=21% Similarity=0.238 Sum_probs=148.2
Q ss_pred CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc
Q 022302 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (299)
Q Consensus 92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 170 (299)
.+++.|++++ .+.+ +.+..|.++++|++|+|++|.+++..+. .+..+++|++|++++|.++...
T Consensus 99 ~~L~~L~Ls~n~i~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~ 163 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQ-----------IEVGAFNGLASLNTLELFDNWLTVIPSG----AFEYLSKLRELWLRNNPIESIP 163 (452)
T ss_dssp TTCCEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSSCCSBCCTT----TSSSCTTCCEEECCSCCCCEEC
T ss_pred CCCCEEECCCCccCC-----------cChhhccCcccCCEEECCCCcCCccChh----hhcccCCCCEEECCCCCcceeC
Confidence 4677778777 4443 4456788899999999999999988776 7888999999999999998766
Q ss_pred hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cc
Q 022302 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GL 248 (299)
Q Consensus 171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l 248 (299)
+..+..+++|++|++++|+..+.++...+..+++|++|++++| .+.+. | .+..+++|++|++++|.+++.. .+
T Consensus 164 ~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n--~l~~~-~--~~~~l~~L~~L~Ls~N~l~~~~~~~~ 238 (452)
T 3zyi_A 164 SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC--NIKDM-P--NLTPLVGLEELEMSGNHFPEIRPGSF 238 (452)
T ss_dssp TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS--CCSSC-C--CCTTCTTCCEEECTTSCCSEECGGGG
T ss_pred HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC--ccccc-c--cccccccccEEECcCCcCcccCcccc
Confidence 6788889999999999866555677667888899999999998 55543 3 4677888999999998888764 37
Q ss_pred cCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCC
Q 022302 249 AKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKP 295 (299)
Q Consensus 249 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~ 295 (299)
..+++|+.|++++|++++..|..+..+++|++|++++|++++..++.
T Consensus 239 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 285 (452)
T 3zyi_A 239 HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL 285 (452)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred cCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence 88888888888888888888888888888888888888887644443
No 28
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=8.5e-22 Score=172.17 Aligned_cols=164 Identities=25% Similarity=0.317 Sum_probs=145.8
Q ss_pred ccCCCCCccEEeCCCCCCCCcch-hhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhh
Q 022302 121 LFHPFEELQRLDLPGNWFTGIYE-NRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL 199 (299)
Q Consensus 121 ~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 199 (299)
.+..+++|++|++++|.+.+..+ . .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+...+..+
T Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 171 (306)
T 2z66_A 96 NFLGLEQLEHLDFQHSNLKQMSEFS----VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171 (306)
T ss_dssp EEETCTTCCEEECTTSEEESSTTTT----TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred hcCCCCCCCEEECCCCcccccccch----hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH
Confidence 47789999999999999988765 3 688999999999999999988888899999999999999999863333478
Q ss_pred cCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCC-
Q 022302 200 ANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLT- 276 (299)
Q Consensus 200 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~- 276 (299)
..+++|++|++++| .+.+..+ ..+..+++|++|++++|.+++.+ .+..+++|+.|++++|.+++..|..+..++
T Consensus 172 ~~l~~L~~L~Ls~n--~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 248 (306)
T 2z66_A 172 TELRNLTFLDLSQC--QLEQLSP-TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248 (306)
T ss_dssp TTCTTCCEEECTTS--CCCEECT-TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCT
T ss_pred hhCcCCCEEECCCC--CcCCcCH-HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhc
Confidence 99999999999999 7776656 78899999999999999998875 378899999999999999999999999985
Q ss_pred CCCEEecCCCCCCCc
Q 022302 277 NLQVLDLSDNQNLTT 291 (299)
Q Consensus 277 ~L~~L~l~~N~l~g~ 291 (299)
+|++|++++|++.+.
T Consensus 249 ~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 249 SLAFLNLTQNDFACT 263 (306)
T ss_dssp TCCEEECTTCCEECS
T ss_pred cCCEEEccCCCeecc
Confidence 999999999999764
No 29
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=2e-21 Score=167.38 Aligned_cols=183 Identities=28% Similarity=0.295 Sum_probs=108.4
Q ss_pred cEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccch
Q 022302 93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL 171 (299)
Q Consensus 93 ~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 171 (299)
.++.+++++ .+.+ +.+..+.++++|++|++++|.+.+..+. .+..+++|++|++++|.+++..+
T Consensus 29 ~l~~L~ls~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 29 STKNLDLSFNPLRH-----------LGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp TCCEEECTTCCCCE-----------ECTTTTTTCTTCSEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECT
T ss_pred CccEEECCCCcccc-----------cCHhHhccccCCcEEECCCCcCCccCHH----HccCCcCCCEEECCCCccCccCh
Confidence 466666666 4433 2233455556666666666666555444 45555666666666666555555
Q ss_pred HhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCC-ccchhhhccCCCCcEEECCCCCCCCc-----
Q 022302 172 PYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSG-SLTRLGLANLTNLKKLDLGSCGITTI----- 245 (299)
Q Consensus 172 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~----- 245 (299)
..+..+++|++|++++|++.+ ++...+..+++|++|++++| .+.+ .+| ..+..+++|++|++++|++++.
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n--~l~~~~l~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 169 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHN--LIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSS--CCCCCCCC-GGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred hhhcCCccccEEECCCCCccc-cCchhcccCCCCCEEECcCC--ccceecCc-hhhccCCCCCEEECCCCCCCcCCHHHh
Confidence 555555666666666655553 22223555555566666555 4433 123 4455555555555555555443
Q ss_pred -----------------------cc-ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCC
Q 022302 246 -----------------------QG-LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGK 294 (299)
Q Consensus 246 -----------------------~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~ 294 (299)
+. .....+|++|++++|.+++..+..+..+++|++|++++|++.+..|.
T Consensus 170 ~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp HHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred hhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 21 22334788888888888866666678889999999999998877653
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=3.3e-22 Score=188.26 Aligned_cols=192 Identities=26% Similarity=0.363 Sum_probs=152.9
Q ss_pred CCCCCCceEecCCC-----------CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhh
Q 022302 78 CCDDWEGVKCNATT-----------RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENR 145 (299)
Q Consensus 78 ~c~~w~gv~C~~~~-----------~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 145 (299)
.| .|.|+ |+... .+++.+++++ .+.+ ..+..+.++++|++|++++|.+++..+.
T Consensus 3 ~C-~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~- 68 (549)
T 2z81_A 3 SC-DASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITY-----------IGHGDLRACANLQVLILKSSRINTIEGD- 68 (549)
T ss_dssp EE-CTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCE-----------ECSSTTSSCTTCCEEECTTSCCCEECTT-
T ss_pred cC-CCCce-EECCCCccccccccCCCCccEEECcCCccCc-----------cChhhhhcCCcccEEECCCCCcCccChh-
Confidence 37 89998 86422 3577777777 5444 3455788999999999999999998876
Q ss_pred hHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCc-chhhhhcCCCCCCEEECCCCcCCCCCccchh
Q 022302 146 AYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGS-RTKQGLANLRYLQVLDLSGNFNITSGSLTRL 224 (299)
Q Consensus 146 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~ 224 (299)
.|..+++|++|++++|.+++..|..++.+++|++|++++|.+++. .|. .+..+++|++|++++| ...+.++..
T Consensus 69 ---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n--~~~~~~~~~ 142 (549)
T 2z81_A 69 ---AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNV--ETFSEIRRI 142 (549)
T ss_dssp ---TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEES--SSCCEECTT
T ss_pred ---hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCC--ccccccCHh
Confidence 789999999999999999988888899999999999999999852 343 6889999999999999 766667656
Q ss_pred hhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccc-cCCCCCCEEecCCCCCCC
Q 022302 225 GLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGL-ANLTNLQVLDLSDNQNLT 290 (299)
Q Consensus 225 ~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~l~~N~l~g 290 (299)
.+..+++|++|++++|++++.. .+..+++|++|++++|.+. .+|+.+ ..+++|++|++++|++.+
T Consensus 143 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 143 DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTT
T ss_pred hhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcccc
Confidence 7889999999999999988753 3777778888888888776 344433 467788888888888776
No 31
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=2.9e-21 Score=170.80 Aligned_cols=191 Identities=28% Similarity=0.366 Sum_probs=117.7
Q ss_pred CCCCCceEecCC---------CCcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHH
Q 022302 79 CDDWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYD 148 (299)
Q Consensus 79 c~~w~gv~C~~~---------~~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 148 (299)
| .|..+.|... ..+++.+++++ .+.+ +.+..+.++++|++|++++|.+++..|.
T Consensus 33 c-~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~---- 96 (332)
T 2ft3_A 33 C-HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISE-----------LRKDDFKGLQHLYALVLVNNKISKIHEK---- 96 (332)
T ss_dssp E-ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSSCCCEECGG----
T ss_pred c-cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCc-----------cCHhHhhCCCCCcEEECCCCccCccCHh----
Confidence 5 8999999742 13566777776 4443 3345677788888888888888877666
Q ss_pred hhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcC-------------
Q 022302 149 SFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFN------------- 215 (299)
Q Consensus 149 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~------------- 215 (299)
.+..+++|++|++++|.++. +|..+. ++|++|++++|++.+ ++...+..+++|++|++++|.+
T Consensus 97 ~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 172 (332)
T 2ft3_A 97 AFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172 (332)
T ss_dssp GSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC
T ss_pred HhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCccccCCCCcccccCC
Confidence 77778888888888877763 443332 566666666666663 3433466666666666666622
Q ss_pred -------------------------------CCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCC
Q 022302 216 -------------------------------ITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYN 262 (299)
Q Consensus 216 -------------------------------~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N 262 (299)
.+.+..+ ..+..+++|++|++++|++++.++ +..+++|++|++++|
T Consensus 173 ~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 251 (332)
T 2ft3_A 173 KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIEL-EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251 (332)
T ss_dssp CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCT-TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC
Confidence 1111111 334455555555665555555432 555666666666666
Q ss_pred ccCccCcccccCCCCCCEEecCCCCCCCc
Q 022302 263 YYIHSSLEGLANLTNLQVLDLSDNQNLTT 291 (299)
Q Consensus 263 ~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ 291 (299)
+++ .+|..+..+++|++|++++|++++.
T Consensus 252 ~l~-~lp~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 252 KLS-RVPAGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp CCC-BCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred cCe-ecChhhhcCccCCEEECCCCCCCcc
Confidence 666 5566666666666666666666543
No 32
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=2.5e-21 Score=166.81 Aligned_cols=157 Identities=27% Similarity=0.237 Sum_probs=130.5
Q ss_pred CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL 205 (299)
Q Consensus 126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L 205 (299)
++|++|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++ +++..+..+++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSL 102 (276)
T ss_dssp TTCCEEECTTCCCCEECTT----TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTC
T ss_pred CCccEEECCCCcccccCHh----HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc-cChhhhcCCccc
Confidence 4799999999999998876 78999999999999999998777789999999999999999986 454479999999
Q ss_pred CEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCc--c-cccCCCCCCEEeCCCCccCccCcccccCCCCCC---
Q 022302 206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTI--Q-GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQ--- 279 (299)
Q Consensus 206 ~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~--- 279 (299)
++|++++| .+.+..+ ..+..+++|++|++++|.+++. + .+..+++|++|++++|++++..+..+..+++|+
T Consensus 103 ~~L~l~~n--~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~ 179 (276)
T 2z62_A 103 QKLVAVET--NLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (276)
T ss_dssp CEEECTTS--CCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred cEEECCCC--CccccCc-hhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc
Confidence 99999999 6665444 5688999999999999999873 2 488999999999999999876666565444444
Q ss_pred -EEecCCCCCCC
Q 022302 280 -VLDLSDNQNLT 290 (299)
Q Consensus 280 -~L~l~~N~l~g 290 (299)
+|++++|++.+
T Consensus 180 l~L~ls~n~l~~ 191 (276)
T 2z62_A 180 LSLDLSLNPMNF 191 (276)
T ss_dssp EEEECCSSCCCE
T ss_pred eeeecCCCcccc
Confidence 55555555544
No 33
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=1e-20 Score=164.33 Aligned_cols=161 Identities=28% Similarity=0.269 Sum_probs=123.8
Q ss_pred ccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchh
Q 022302 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK 196 (299)
Q Consensus 117 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 196 (299)
+.+..+.++++|++|++++|.+++..+ ...+++|++|++++|.++ .+|..+..+++|++|++++|++++ +++
T Consensus 46 ~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~ 117 (290)
T 1p9a_G 46 FSLATLMPYTRLTQLNLDRAELTKLQV------DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPL 117 (290)
T ss_dssp EEGGGGTTCTTCCEEECTTSCCCEEEC------CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCC-CCS
T ss_pred cCHHHhhcCCCCCEEECCCCccCcccC------CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcc-cCH
Confidence 345567788888888888888877643 267888888888888887 466677788888888888888875 454
Q ss_pred hhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccCccCcccccC
Q 022302 197 QGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLAN 274 (299)
Q Consensus 197 ~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~p~~l~~ 274 (299)
..|..+++|++|++++| .+.+..+ ..+..+++|+.|++++|+++..+. +..+++|+.|++++|+++ .+|+.+..
T Consensus 118 ~~~~~l~~L~~L~L~~N--~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~ 193 (290)
T 1p9a_G 118 GALRGLGELQELYLKGN--ELKTLPP-GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG 193 (290)
T ss_dssp STTTTCTTCCEEECTTS--CCCCCCT-TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred HHHcCCCCCCEEECCCC--CCCccCh-hhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcc
Confidence 46788888888888888 6554433 567778888888888888887764 567888888888888888 67777777
Q ss_pred CCCCCEEecCCCCCC
Q 022302 275 LTNLQVLDLSDNQNL 289 (299)
Q Consensus 275 l~~L~~L~l~~N~l~ 289 (299)
+++|+.|++++|++.
T Consensus 194 ~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 194 SHLLPFAFLHGNPWL 208 (290)
T ss_dssp TCCCSEEECCSCCBC
T ss_pred cccCCeEEeCCCCcc
Confidence 888888888888875
No 34
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=8.3e-21 Score=164.97 Aligned_cols=159 Identities=28% Similarity=0.226 Sum_probs=140.0
Q ss_pred CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL 205 (299)
Q Consensus 126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L 205 (299)
+++++|++++|.+++..+. .+..+++|++|++++|.+++..+ .+.+++|++|++++|+++ .+|. .+..+++|
T Consensus 31 ~~l~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~-~~~~l~~L 102 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLA----TLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPL-LGQTLPAL 102 (290)
T ss_dssp TTCCEEECTTSCCSEEEGG----GGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCC-CTTTCTTC
T ss_pred CCCCEEEcCCCcCCccCHH----HhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCch-hhccCCCC
Confidence 6899999999999998887 89999999999999999986433 378999999999999998 5775 78899999
Q ss_pred CEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEec
Q 022302 206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDL 283 (299)
Q Consensus 206 ~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l 283 (299)
++|++++| .+.+..+ ..+..+++|++|++++|++++.++ +..+++|+.|++++|++++..+..+..+++|++|++
T Consensus 103 ~~L~l~~N--~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 103 TVLDVSFN--RLTSLPL-GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179 (290)
T ss_dssp CEEECCSS--CCCCCCS-STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CEEECCCC--cCcccCH-HHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEEC
Confidence 99999999 7765554 678999999999999999998765 778999999999999999666667789999999999
Q ss_pred CCCCCCCccCCCc
Q 022302 284 SDNQNLTTLGKPL 296 (299)
Q Consensus 284 ~~N~l~g~ip~~~ 296 (299)
++|++. .+|+.+
T Consensus 180 ~~N~l~-~ip~~~ 191 (290)
T 1p9a_G 180 QENSLY-TIPKGF 191 (290)
T ss_dssp CSSCCC-CCCTTT
T ss_pred CCCcCC-ccChhh
Confidence 999998 577654
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=4.5e-21 Score=176.42 Aligned_cols=176 Identities=27% Similarity=0.279 Sum_probs=136.6
Q ss_pred ccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHh-hccCCCCcEEeCCCCcCCCcch
Q 022302 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY-LNTLTSLTTLILSDNSIEGSRT 195 (299)
Q Consensus 117 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p 195 (299)
..+..++++++|++|++++|.+++..+.. ..+..+++|++|++++|.+++..|.. +..+++|++|++++|++.+..+
T Consensus 94 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 94 LETGAFNGLANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCBTHHHHS--STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred cChhhccCcccCCEEeCCCCCCCccccCc--ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence 34667899999999999999999865531 13889999999999999999887765 8899999999999999986544
Q ss_pred hhhhcC----------------------------------CCCCCEEECCCCcC--------------------------
Q 022302 196 KQGLAN----------------------------------LRYLQVLDLSGNFN-------------------------- 215 (299)
Q Consensus 196 ~~~~~~----------------------------------l~~L~~L~Ls~n~~-------------------------- 215 (299)
. .+.. +++|++|++++|.+
T Consensus 172 ~-~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 172 E-DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp T-TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred h-hhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence 3 3322 24566666666511
Q ss_pred -----------------------------------CCCCccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEe
Q 022302 216 -----------------------------------ITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALD 258 (299)
Q Consensus 216 -----------------------------------~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~ 258 (299)
.+.+..+ ..+..+++|++|++++|++++.+ .+..+++|++|+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 329 (455)
T 3v47_A 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK-SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329 (455)
T ss_dssp TTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ccccccchhhhccCcccccccccccCceEEEecCccccccch-hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEE
Confidence 2222233 45677888888888888888764 477888999999
Q ss_pred CCCCccCccCcccccCCCCCCEEecCCCCCCCccCCCc
Q 022302 259 LSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL 296 (299)
Q Consensus 259 L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~~ 296 (299)
+++|.+++..|..+..+++|++|++++|++++..|..+
T Consensus 330 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 367 (455)
T 3v47_A 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367 (455)
T ss_dssp CCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTT
T ss_pred CCCCccCCcChhHhcCcccCCEEECCCCcccccChhhc
Confidence 99999988778888899999999999999987777655
No 36
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=1.7e-21 Score=170.98 Aligned_cols=160 Identities=25% Similarity=0.239 Sum_probs=106.1
Q ss_pred CCCCCccEEeCCCCCCCCcchhhhHHhhcCC-----CCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcc--h
Q 022302 123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSL-----KQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSR--T 195 (299)
Q Consensus 123 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l-----~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p 195 (299)
..+++|++|++++|.+++. |. .+..+ ++|++|++++|++++..|..++.+++|++|++++|++.+.+ +
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~----~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DA----WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SS----HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred hcCCCccEEEccCCCCcch-hH----HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 6677777777777777776 43 33333 77777777777777766677777777777777777766532 2
Q ss_pred hhhh--cCCCCCCEEECCCCcCCCCC--ccchhhhccCCCCcEEECCCCCCCCcc---cccCCCCCCEEeCCCCccCccC
Q 022302 196 KQGL--ANLRYLQVLDLSGNFNITSG--SLTRLGLANLTNLKKLDLGSCGITTIQ---GLAKLKNLEALDLSYNYYIHSS 268 (299)
Q Consensus 196 ~~~~--~~l~~L~~L~Ls~n~~~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~ 268 (299)
. .+ ..+++|++|++++| .+.+ .++...+..+++|++|++++|++++.+ .+..+++|++|++++|.++ .+
T Consensus 193 ~-~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~i 268 (312)
T 1wwl_A 193 S-ALCPLKFPTLQVLALRNA--GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QV 268 (312)
T ss_dssp H-HSCTTSCTTCCEEECTTS--CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SC
T ss_pred H-HHHhccCCCCCEEECCCC--cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hh
Confidence 2 23 66777777777777 4442 333234456677777777777777643 2445677777777777777 66
Q ss_pred cccccCCCCCCEEecCCCCCCCccCC
Q 022302 269 LEGLANLTNLQVLDLSDNQNLTTLGK 294 (299)
Q Consensus 269 p~~l~~l~~L~~L~l~~N~l~g~ip~ 294 (299)
|..+. ++|++|++++|++++. |.
T Consensus 269 p~~~~--~~L~~L~Ls~N~l~~~-p~ 291 (312)
T 1wwl_A 269 PKGLP--AKLSVLDLSYNRLDRN-PS 291 (312)
T ss_dssp CSSCC--SEEEEEECCSSCCCSC-CC
T ss_pred hhhcc--CCceEEECCCCCCCCC-hh
Confidence 66665 6777777777777654 54
No 37
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2.4e-21 Score=163.50 Aligned_cols=183 Identities=17% Similarity=0.206 Sum_probs=151.9
Q ss_pred CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCC-CCCcchhhhHHhhcCCCCCCEEECCC-CCCCc
Q 022302 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNW-FTGIYENRAYDSFGSLKQLKMLNLGD-NFFND 168 (299)
Q Consensus 92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~ 168 (299)
..++.+++++ .+.+ ++...+.++++|++|++++|. ++...+. .|.++++|++|++++ |.+++
T Consensus 31 ~~l~~L~l~~n~l~~-----------i~~~~~~~l~~L~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~l~~~n~l~~ 95 (239)
T 2xwt_C 31 PSTQTLKLIETHLRT-----------IPSHAFSNLPNISRIYVSIDVTLQQLESH----SFYNLSKVTHIEIRNTRNLTY 95 (239)
T ss_dssp TTCCEEEEESCCCSE-----------ECTTTTTTCTTCCEEEEECCSSCCEECTT----TEESCTTCCEEEEEEETTCCE
T ss_pred CcccEEEEeCCcceE-----------ECHHHccCCCCCcEEeCCCCCCcceeCHh----HcCCCcCCcEEECCCCCCeeE
Confidence 3567777777 5444 445578899999999999997 8887776 789999999999998 99998
Q ss_pred cchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCC---EEECCCCcCCCCCccchhhhccCCCCc-EEECCCCCCCC
Q 022302 169 SILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ---VLDLSGNFNITSGSLTRLGLANLTNLK-KLDLGSCGITT 244 (299)
Q Consensus 169 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~---~L~Ls~n~~~~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~ 244 (299)
..+..+..+++|++|++++|++++ +|. +..+++|+ +|++++| .....++...+..+++|+ +|++++|+++.
T Consensus 96 i~~~~f~~l~~L~~L~l~~n~l~~-lp~--~~~l~~L~~L~~L~l~~N--~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~ 170 (239)
T 2xwt_C 96 IDPDALKELPLLKFLGIFNTGLKM-FPD--LTKVYSTDIFFILEITDN--PYMTSIPVNAFQGLCNETLTLKLYNNGFTS 170 (239)
T ss_dssp ECTTSEECCTTCCEEEEEEECCCS-CCC--CTTCCBCCSEEEEEEESC--TTCCEECTTTTTTTBSSEEEEECCSCCCCE
T ss_pred cCHHHhCCCCCCCEEeCCCCCCcc-ccc--cccccccccccEEECCCC--cchhhcCcccccchhcceeEEEcCCCCCcc
Confidence 777789999999999999999986 664 88888888 9999998 444456646788999999 99999999986
Q ss_pred ccc-ccCCCCCCEEeCCCCc-cCccCcccccCC-CCCCEEecCCCCCCCccCCC
Q 022302 245 IQG-LAKLKNLEALDLSYNY-YIHSSLEGLANL-TNLQVLDLSDNQNLTTLGKP 295 (299)
Q Consensus 245 ~~~-l~~l~~L~~L~L~~N~-l~~~~p~~l~~l-~~L~~L~l~~N~l~g~ip~~ 295 (299)
.+. ....++|++|++++|+ +++..+..+..+ ++|++|++++|++++ +|+.
T Consensus 171 i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~ 223 (239)
T 2xwt_C 171 VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK 223 (239)
T ss_dssp ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT
T ss_pred cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh
Confidence 653 2333899999999995 997667888999 999999999999985 5553
No 38
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=1.5e-21 Score=171.26 Aligned_cols=157 Identities=23% Similarity=0.203 Sum_probs=133.7
Q ss_pred CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCcc--chHhh--ccCCCCcEEeCCCCcCCC--cchhhhh
Q 022302 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS--ILPYL--NTLTSLTTLILSDNSIEG--SRTKQGL 199 (299)
Q Consensus 126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~p~~l--~~l~~L~~L~L~~n~l~~--~~p~~~~ 199 (299)
++|++|++++|.+.+..+. .+..+++|++|++++|++.+. .|..+ ..+++|++|++++|++++ .++...+
T Consensus 149 ~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 224 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCE----QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224 (312)
T ss_dssp TTCCEEEEESCSCCCCCTT----TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH
T ss_pred CCCcEEEeeCCCCccchHH----HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH
Confidence 8999999999999999877 899999999999999998875 34455 889999999999999984 2343456
Q ss_pred cCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCC
Q 022302 200 ANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQ 279 (299)
Q Consensus 200 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 279 (299)
..+++|++|++++| .+.+..+...+..+++|++|++++|+++..+.... ++|++|++++|++++. |. +..+++|+
T Consensus 225 ~~l~~L~~L~Ls~N--~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~~-p~-~~~l~~L~ 299 (312)
T 1wwl_A 225 AARVQLQGLDLSHN--SLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRLDRN-PS-PDELPQVG 299 (312)
T ss_dssp HTTCCCSEEECTTS--CCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCCCSC-CC-TTTSCEEE
T ss_pred hcCCCCCEEECCCC--cCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-CCceEEECCCCCCCCC-hh-HhhCCCCC
Confidence 78899999999999 77776543456778999999999999997764222 8999999999999965 66 99999999
Q ss_pred EEecCCCCCCCc
Q 022302 280 VLDLSDNQNLTT 291 (299)
Q Consensus 280 ~L~l~~N~l~g~ 291 (299)
+|++++|++++.
T Consensus 300 ~L~L~~N~l~~~ 311 (312)
T 1wwl_A 300 NLSLKGNPFLDS 311 (312)
T ss_dssp EEECTTCTTTCC
T ss_pred EEeccCCCCCCC
Confidence 999999999863
No 39
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=5.9e-21 Score=181.83 Aligned_cols=169 Identities=22% Similarity=0.204 Sum_probs=107.5
Q ss_pred cccCCCCCccEEeCCCCCCCCcc--hhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhh
Q 022302 120 SLFHPFEELQRLDLPGNWFTGIY--ENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQ 197 (299)
Q Consensus 120 ~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 197 (299)
..+.++++|++|++++|.+.+.. +. .+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+..+..
T Consensus 344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 344 GCLENLENLRELDLSHDDIETSDCCNL----QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp STTTTCTTCCEEECCSSCCCEEEESTT----TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred hhhhccCcCCEEECCCCccccccCcch----hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence 34666777777777777776654 43 5667777777777777776666666777777777777777766554443
Q ss_pred hhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCc-----ccccCCCCCCEEeCCCCccCccCcccc
Q 022302 198 GLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTI-----QGLAKLKNLEALDLSYNYYIHSSLEGL 272 (299)
Q Consensus 198 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~l~~l~~L~~L~L~~N~l~~~~p~~l 272 (299)
.+..+++|++|++++| .+.+..+ ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..|..+
T Consensus 420 ~~~~l~~L~~L~l~~n--~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 496 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHS--LLDISSE-QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496 (606)
T ss_dssp TTTTCTTCCEEECTTC--CCBTTCT-TTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT
T ss_pred hhhCcccCCEEECCCC--ccCCcCH-HHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh
Confidence 4666667777777776 5554444 4556666666666666666542 125555666666666666665556666
Q ss_pred cCCCCCCEEecCCCCCCCccCCC
Q 022302 273 ANLTNLQVLDLSDNQNLTTLGKP 295 (299)
Q Consensus 273 ~~l~~L~~L~l~~N~l~g~ip~~ 295 (299)
..+++|++|++++|++++.+|+.
T Consensus 497 ~~l~~L~~L~Ls~N~l~~~~~~~ 519 (606)
T 3t6q_A 497 TSLKMMNHVDLSHNRLTSSSIEA 519 (606)
T ss_dssp TTCTTCCEEECCSSCCCGGGGGG
T ss_pred ccccCCCEEECCCCccCcCChhH
Confidence 66666666666666666555543
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=6.8e-21 Score=188.24 Aligned_cols=197 Identities=24% Similarity=0.236 Sum_probs=167.4
Q ss_pred CCCceEecCCCCcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcc-hhhhHHhhcCCCCCCE
Q 022302 81 DWEGVKCNATTRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIY-ENRAYDSFGSLKQLKM 158 (299)
Q Consensus 81 ~w~gv~C~~~~~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~l~~l~~L~~ 158 (299)
.|..|.+ ...+++.|+++. .+.+ +.+..|.++++|++|++++|...+.+ |. .|.++++|++
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N~i~~-----------i~~~~~~~l~~L~~LdLs~n~~~~~i~~~----~f~~L~~L~~ 77 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFNYIRT-----------VTASSFPFLEQLQLLELGSQYTPLTIDKE----AFRNLPNLRI 77 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESCCCCE-----------ECSSSCSSCCSCSEEEECTTCCCCEECTT----TTSSCTTCCE
T ss_pred CCCCCCC--CCCCcCEEECCCCcCCc-----------cChhHCcccccCeEEeCCCCCCccccCHH----HhcCCCCCCE
Confidence 6778777 457899999988 5554 44667899999999999999776665 55 7999999999
Q ss_pred EECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchh-hhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEEC
Q 022302 159 LNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK-QGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDL 237 (299)
Q Consensus 159 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~L 237 (299)
|+|++|.+.+..|..++.+++|++|+|++|.+++.++. ..+..+++|++|++++| .+.+..+...++.+++|++|++
T Consensus 78 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N--~l~~~~~~~~~~~L~~L~~L~L 155 (844)
T 3j0a_A 78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN--QIRSLYLHPSFGKLNSLKSIDF 155 (844)
T ss_dssp EECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC--CCCCCCCCGGGGTCSSCCEEEE
T ss_pred EECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC--cccccccchhHhhCCCCCEEEC
Confidence 99999999998899999999999999999999976654 23899999999999999 7776655467899999999999
Q ss_pred CCCCCCCcc--cccCC--CCCCEEeCCCCccCccCcccccCCCC------CCEEecCCCCCCCccCCCc
Q 022302 238 GSCGITTIQ--GLAKL--KNLEALDLSYNYYIHSSLEGLANLTN------LQVLDLSDNQNLTTLGKPL 296 (299)
Q Consensus 238 s~n~l~~~~--~l~~l--~~L~~L~L~~N~l~~~~p~~l~~l~~------L~~L~l~~N~l~g~ip~~~ 296 (299)
++|.+++.. .+..+ ++|+.|++++|.+++..|..++.+++ |++|++++|.+++.+|..+
T Consensus 156 s~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 224 (844)
T 3j0a_A 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF 224 (844)
T ss_dssp ESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGG
T ss_pred CCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHH
Confidence 999998764 35555 89999999999999988888877766 9999999999988887654
No 41
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=3.9e-20 Score=176.17 Aligned_cols=181 Identities=27% Similarity=0.253 Sum_probs=97.4
Q ss_pred cEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccch
Q 022302 93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL 171 (299)
Q Consensus 93 ~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 171 (299)
.++.+++++ .+.+ +.+..++.+++|++|++++|.++.. |. .+..+++|++|++++|.+.+..|
T Consensus 255 ~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~l-p~----~l~~l~~L~~L~l~~n~l~~~~~ 318 (606)
T 3t6q_A 255 SVESINLQKHYFFN-----------ISSNTFHCFSGLQELDLTATHLSEL-PS----GLVGLSTLKKLVLSANKFENLCQ 318 (606)
T ss_dssp EEEEEECTTCCCSS-----------CCTTTTTTCTTCSEEECTTSCCSCC-CS----SCCSCTTCCEEECTTCCCSBGGG
T ss_pred ceeEEEeecCccCc-----------cCHHHhccccCCCEEeccCCccCCC-Ch----hhcccccCCEEECccCCcCcCch
Confidence 566777766 4433 2233455556666666666655532 22 45555566666666665555545
Q ss_pred HhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcC------------------------CCCCccchhhhc
Q 022302 172 PYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFN------------------------ITSGSLTRLGLA 227 (299)
Q Consensus 172 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~------------------------~~~~~~~~~~~~ 227 (299)
..+..+++|++|++++|.+.+.++...+..+++|++|++++|.+ .+.+..+ ..+.
T Consensus 319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~ 397 (606)
T 3t6q_A 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT-EAFK 397 (606)
T ss_dssp GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT-TTTT
T ss_pred hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH-HHhc
Confidence 55555555555555555555444443344555555555555511 3333333 3444
Q ss_pred cCCCCcEEECCCCCCCCcc---cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCC
Q 022302 228 NLTNLKKLDLGSCGITTIQ---GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLT 290 (299)
Q Consensus 228 ~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g 290 (299)
.+++|++|++++|.+++.. .+..+++|+.|++++|.+++..|..+..+++|++|++++|++.+
T Consensus 398 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463 (606)
T ss_dssp TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence 5555555555555554332 14555666666666666665556666666666666666666654
No 42
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=6.1e-21 Score=177.41 Aligned_cols=157 Identities=21% Similarity=0.211 Sum_probs=92.2
Q ss_pred cCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcC
Q 022302 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN 201 (299)
Q Consensus 122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~ 201 (299)
+..+++|++|++++|.+++..+ .++|++|++++|.+++..+ ..+++|++|++++|.+++..|. .+..
T Consensus 76 l~~l~~L~~L~Ls~N~l~~l~~---------~~~L~~L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~-~~~~ 142 (487)
T 3oja_A 76 LESLSTLRTLDLNNNYVQELLV---------GPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDL-DEGC 142 (487)
T ss_dssp CTTCTTCCEEECCSSEEEEEEE---------CTTCCEEECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGB-CGGG
T ss_pred cccCCCCCEEEecCCcCCCCCC---------CCCcCEEECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCch-hhcC
Confidence 4444455555555544443321 1333444444444433222 1345667777777777654343 5666
Q ss_pred CCCCCEEECCCCcCCCCCccchhhhc-cCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCE
Q 022302 202 LRYLQVLDLSGNFNITSGSLTRLGLA-NLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQV 280 (299)
Q Consensus 202 l~~L~~L~Ls~n~~~~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 280 (299)
+++|++|++++| .+.+..| ..+. .+++|++|++++|.+++.+....+++|+.|+|++|.+++. |+.+..+++|+.
T Consensus 143 l~~L~~L~Ls~N--~l~~~~~-~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~ 218 (487)
T 3oja_A 143 RSRVQYLDLKLN--EIDTVNF-AELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTW 218 (487)
T ss_dssp GSSEEEEECTTS--CCCEEEG-GGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSE
T ss_pred CCCCCEEECCCC--CCCCcCh-HHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCC-CHhHcCCCCccE
Confidence 777777777777 6666555 3333 6677777777777777666666677777777777777753 334667777777
Q ss_pred EecCCCCCCCccCCCc
Q 022302 281 LDLSDNQNLTTLGKPL 296 (299)
Q Consensus 281 L~l~~N~l~g~ip~~~ 296 (299)
|++++|++++ +|..+
T Consensus 219 L~Ls~N~l~~-lp~~l 233 (487)
T 3oja_A 219 ISLRNNKLVL-IEKAL 233 (487)
T ss_dssp EECTTSCCCE-ECTTC
T ss_pred EEecCCcCcc-cchhh
Confidence 7777777764 55543
No 43
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=6.3e-20 Score=155.94 Aligned_cols=160 Identities=24% Similarity=0.244 Sum_probs=138.8
Q ss_pred CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL 205 (299)
Q Consensus 126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L 205 (299)
...++++++++.++...+ .+. ++++.|++++|.+++..+..+..+++|++|++++|++++. ++..+..+++|
T Consensus 14 ~~~~~l~~~~~~l~~~p~-----~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L 85 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPS-----GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTEL 85 (251)
T ss_dssp GGGTEEECTTCCCSSCCS-----CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTC
T ss_pred CCCeEEecCCCCccccCC-----CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcC
Confidence 356889999999987654 333 6899999999999998888999999999999999999974 44478999999
Q ss_pred CEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEec
Q 022302 206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDL 283 (299)
Q Consensus 206 ~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l 283 (299)
++|++++| .+.+..+ ..+..+++|++|++++|++++.+. +..+++|++|+|++|.+++..+..+..+++|++|++
T Consensus 86 ~~L~L~~n--~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 162 (251)
T 3m19_A 86 GTLGLANN--QLASLPL-GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162 (251)
T ss_dssp CEEECTTS--CCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEECCCC--cccccCh-hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEEC
Confidence 99999999 6665544 678899999999999999998875 788999999999999999777778999999999999
Q ss_pred CCCCCCCccCCCc
Q 022302 284 SDNQNLTTLGKPL 296 (299)
Q Consensus 284 ~~N~l~g~ip~~~ 296 (299)
++|++.+..|..+
T Consensus 163 ~~N~l~~~~~~~~ 175 (251)
T 3m19_A 163 STNQLQSVPHGAF 175 (251)
T ss_dssp CSSCCSCCCTTTT
T ss_pred CCCcCCccCHHHH
Confidence 9999997665444
No 44
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=3.4e-21 Score=189.43 Aligned_cols=165 Identities=17% Similarity=0.155 Sum_probs=146.5
Q ss_pred ccccC--CCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCC-CCc-cchHhhccCC-------CCcEEeCCC
Q 022302 119 MSLFH--PFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNF-FND-SILPYLNTLT-------SLTTLILSD 187 (299)
Q Consensus 119 ~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l~-------~L~~L~L~~ 187 (299)
|..++ ++++|++|++++|.+.+.+|. .+.++++|++|++++|+ +++ .+|..++.++ +|++|++++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~----~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPD----FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCG----GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChH----HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence 44555 999999999999999999997 89999999999999998 998 8898887665 999999999
Q ss_pred CcCCCcchh-hhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc-cccCCCC-CCEEeCCCCcc
Q 022302 188 NSIEGSRTK-QGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ-GLAKLKN-LEALDLSYNYY 264 (299)
Q Consensus 188 n~l~~~~p~-~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~-L~~L~L~~N~l 264 (299)
|+++ .+|. ..+..+++|++|++++| .+. .+| .+..+++|+.|++++|+++..+ .+..+++ |+.|++++|.+
T Consensus 558 N~L~-~ip~~~~l~~L~~L~~L~Ls~N--~l~-~lp--~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 558 NNLE-EFPASASLQKMVKLGLLDCVHN--KVR-HLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp SCCC-BCCCHHHHTTCTTCCEEECTTS--CCC-BCC--CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCC
T ss_pred CcCC-ccCChhhhhcCCCCCEEECCCC--Ccc-cch--hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCC
Confidence 9999 6775 36999999999999999 666 666 7899999999999999999766 4888888 99999999999
Q ss_pred CccCcccccCCCC--CCEEecCCCCCCCccCC
Q 022302 265 IHSSLEGLANLTN--LQVLDLSDNQNLTTLGK 294 (299)
Q Consensus 265 ~~~~p~~l~~l~~--L~~L~l~~N~l~g~ip~ 294 (299)
+ .+|..+..++. |+.|++++|++.|.+|.
T Consensus 632 ~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 632 K-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp C-SCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred C-cCchhhhccccCCCCEEECcCCcCCCcccc
Confidence 9 88988877654 99999999999998774
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=2e-21 Score=173.27 Aligned_cols=183 Identities=22% Similarity=0.283 Sum_probs=117.4
Q ss_pred CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc
Q 022302 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (299)
Q Consensus 92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 170 (299)
.+++.+++++ .+.+ +.+..+.++++|++|++++|.+++..+. .+..+++|++|++++|++++..
T Consensus 76 ~~L~~L~L~~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~ 140 (353)
T 2z80_A 76 VNLQALVLTSNGINT-----------IEEDSFSSLGSLEHLDLSYNYLSNLSSS----WFKPLSSLTFLNLLGNPYKTLG 140 (353)
T ss_dssp TTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECCSSCCSSCCHH----HHTTCTTCSEEECTTCCCSSSC
T ss_pred CCCCEEECCCCccCc-----------cCHhhcCCCCCCCEEECCCCcCCcCCHh----HhCCCccCCEEECCCCCCcccC
Confidence 4677788877 4444 3345577788888888888888876654 5777888888888888877533
Q ss_pred h-HhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccC--------------------
Q 022302 171 L-PYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANL-------------------- 229 (299)
Q Consensus 171 p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l-------------------- 229 (299)
+ ..+..+++|++|++++|...+.+++..+..+++|++|++++| .+.+..+ ..+..+
T Consensus 141 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~ 217 (353)
T 2z80_A 141 ETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS--DLQSYEP-KSLKSIQNVSHLILHMKQHILLLEIF 217 (353)
T ss_dssp SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET--TCCEECT-TTTTTCSEEEEEEEECSCSTTHHHHH
T ss_pred chhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC--CcCccCH-HHHhccccCCeecCCCCccccchhhh
Confidence 3 366777788888887774333444446667777777777777 5544434 444444
Q ss_pred ----CCCcEEECCCCCCCCcc---------------------------------cccCCCCCCEEeCCCCccCccCccc-
Q 022302 230 ----TNLKKLDLGSCGITTIQ---------------------------------GLAKLKNLEALDLSYNYYIHSSLEG- 271 (299)
Q Consensus 230 ----~~L~~L~Ls~n~l~~~~---------------------------------~l~~l~~L~~L~L~~N~l~~~~p~~- 271 (299)
++|++|++++|.+++.. .+..+++|++|++++|+++ .+|+.
T Consensus 218 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~ 296 (353)
T 2z80_A 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGI 296 (353)
T ss_dssp HHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTT
T ss_pred hhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHH
Confidence 44555555555544321 1334567777777777777 44444
Q ss_pred ccCCCCCCEEecCCCCCCCccC
Q 022302 272 LANLTNLQVLDLSDNQNLTTLG 293 (299)
Q Consensus 272 l~~l~~L~~L~l~~N~l~g~ip 293 (299)
+..+++|++|++++|++.+..|
T Consensus 297 ~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 297 FDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TTTCTTCCEEECCSSCBCCCHH
T ss_pred HhcCCCCCEEEeeCCCccCcCC
Confidence 4677777777777777766554
No 46
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=1.5e-21 Score=187.30 Aligned_cols=166 Identities=14% Similarity=0.202 Sum_probs=121.1
Q ss_pred ccccCCCCCccEEeCCCCCCCCc-----------------chhhhHHhhc--CCCCCCEEECCCCCCCccchHhhccCCC
Q 022302 119 MSLFHPFEELQRLDLPGNWFTGI-----------------YENRAYDSFG--SLKQLKMLNLGDNFFNDSILPYLNTLTS 179 (299)
Q Consensus 119 ~~~~~~l~~L~~L~L~~n~l~~~-----------------~~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 179 (299)
+..++++++|++|++++|.+++. +|. .++ ++++|++|++++|.+.+.+|..++++++
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~----~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 274 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE----DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCch----hhhhcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence 45688889999999999998884 565 777 8899999999999888888888888999
Q ss_pred CcEEeCCCCc-CCC-cchhhhhcCC------CCCCEEECCCCcCCCCCccchh--hhccCCCCcEEECCCCCCC-Ccccc
Q 022302 180 LTTLILSDNS-IEG-SRTKQGLANL------RYLQVLDLSGNFNITSGSLTRL--GLANLTNLKKLDLGSCGIT-TIQGL 248 (299)
Q Consensus 180 L~~L~L~~n~-l~~-~~p~~~~~~l------~~L~~L~Ls~n~~~~~~~~~~~--~~~~l~~L~~L~Ls~n~l~-~~~~l 248 (299)
|++|++++|+ +++ .+|. .++.+ ++|++|++++| .+. .+| . .+..+++|++|++++|+++ ..+.+
T Consensus 275 L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n--~l~-~ip-~~~~l~~l~~L~~L~L~~N~l~g~ip~~ 349 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYIGYN--NLK-TFP-VETSLQKMKKLGMLECLYNQLEGKLPAF 349 (636)
T ss_dssp CCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEECCSS--CCS-SCC-CHHHHTTCTTCCEEECCSCCCEEECCCC
T ss_pred CCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEECCCC--cCC-ccC-chhhhccCCCCCEEeCcCCcCccchhhh
Confidence 9999999988 877 6775 56655 88888888888 665 566 4 6788888888888888877 33344
Q ss_pred cCCCCCCEEeCCCCccCccCcccccCCCC-CCEEecCCCCCCCccCCC
Q 022302 249 AKLKNLEALDLSYNYYIHSSLEGLANLTN-LQVLDLSDNQNLTTLGKP 295 (299)
Q Consensus 249 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~l~~N~l~g~ip~~ 295 (299)
..+++|+.|++++|.++ .+|+.+..+++ |++|++++|+++ .+|+.
T Consensus 350 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~ 395 (636)
T 4eco_A 350 GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNI 395 (636)
T ss_dssp EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSC
T ss_pred CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchh
Confidence 55555555555555555 45555555555 555555555554 45543
No 47
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=5.7e-21 Score=167.45 Aligned_cols=163 Identities=21% Similarity=0.116 Sum_probs=118.1
Q ss_pred CCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCc--chh-hhh
Q 022302 123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGS--RTK-QGL 199 (299)
Q Consensus 123 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~-~~~ 199 (299)
..+++|++|++++|.+.+..+......+..+++|++|++++|.+.+..+..++.+++|++|++++|++.+. ++. ..+
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 77888888888888888755422212455788888888888888877777888888888888888887642 221 123
Q ss_pred cCCCCCCEEECCCCcCCCCC--ccchhhhccCCCCcEEECCCCCCCCcc--cccCC---CCCCEEeCCCCccCccCcccc
Q 022302 200 ANLRYLQVLDLSGNFNITSG--SLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKL---KNLEALDLSYNYYIHSSLEGL 272 (299)
Q Consensus 200 ~~l~~L~~L~Ls~n~~~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l---~~L~~L~L~~N~l~~~~p~~l 272 (299)
..+++|++|++++| .+.. ..+...+..+++|++|++++|++++.. .+..+ ++|++|++++|+++ .+|..+
T Consensus 194 ~~l~~L~~L~Ls~N--~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~ 270 (310)
T 4glp_A 194 HKFPAIQNLALRNT--GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL 270 (310)
T ss_dssp TSSCCCCSCBCCSS--CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC
T ss_pred hcCCCCCEEECCCC--CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh
Confidence 67788888888888 5432 222113567788888888888888762 24444 68888888888888 667766
Q ss_pred cCCCCCCEEecCCCCCCC
Q 022302 273 ANLTNLQVLDLSDNQNLT 290 (299)
Q Consensus 273 ~~l~~L~~L~l~~N~l~g 290 (299)
. ++|++|++++|++++
T Consensus 271 ~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 271 P--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp C--SCCSCEECCSCCCCS
T ss_pred c--CCCCEEECCCCcCCC
Confidence 4 788888888888886
No 48
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=3.1e-20 Score=179.26 Aligned_cols=164 Identities=26% Similarity=0.234 Sum_probs=136.1
Q ss_pred CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc
Q 022302 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (299)
Q Consensus 92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 170 (299)
.+++.+++++ .+.+ +.+..|.++++|++|++++|.+.+..|. .+.++++|++|++++|.+++..
T Consensus 25 ~~l~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~ 89 (680)
T 1ziw_A 25 TNITVLNLTHNQLRR-----------LPAANFTRYSQLTSLDVGFNTISKLEPE----LCQKLPMLKVLNLQHNELSQLS 89 (680)
T ss_dssp TTCSEEECCSSCCCC-----------CCGGGGGGGTTCSEEECCSSCCCCCCTT----HHHHCTTCCEEECCSSCCCCCC
T ss_pred CCCcEEECCCCCCCC-----------cCHHHHhCCCcCcEEECCCCccCccCHH----HHhcccCcCEEECCCCccCccC
Confidence 4677888877 5544 3455688899999999999999998887 7889999999999999998766
Q ss_pred hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc---
Q 022302 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--- 247 (299)
Q Consensus 171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--- 247 (299)
+..|+.+++|++|++++|++++ +++..++.+++|++|++++| .+.+..+ ..+..+++|++|++++|.+++.++
T Consensus 90 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n--~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~ 165 (680)
T 1ziw_A 90 DKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHN--GLSSTKL-GTQVQLENLQELLLSNNKIQALKSEEL 165 (680)
T ss_dssp TTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSS--CCSCCCC-CSSSCCTTCCEEECCSSCCCCBCHHHH
T ss_pred hhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECCCC--cccccCc-hhhcccccCCEEEccCCcccccCHHHh
Confidence 6679999999999999999985 55447899999999999999 7777666 678889999999999999988753
Q ss_pred -ccCCCCCCEEeCCCCccCccCcccccC
Q 022302 248 -LAKLKNLEALDLSYNYYIHSSLEGLAN 274 (299)
Q Consensus 248 -l~~l~~L~~L~L~~N~l~~~~p~~l~~ 274 (299)
...+++|++|++++|.+++..|..+..
T Consensus 166 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 193 (680)
T 1ziw_A 166 DIFANSSLKKLELSSNQIKEFSPGCFHA 193 (680)
T ss_dssp GGGTTCEESEEECTTCCCCCBCTTGGGG
T ss_pred hccccccccEEECCCCcccccChhhhhh
Confidence 345688999999999998877766543
No 49
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.84 E-value=4.7e-20 Score=172.55 Aligned_cols=161 Identities=27% Similarity=0.309 Sum_probs=142.0
Q ss_pred CCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCc--cchHhhccCCCCcEEeCCCCcCCCcchhhhhc
Q 022302 123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND--SILPYLNTLTSLTTLILSDNSIEGSRTKQGLA 200 (299)
Q Consensus 123 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 200 (299)
..+++|++|++++|.+++..|. .+..+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|...+.
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~ 396 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFE----NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTT----TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred hhCCcccEEEeECCccChhhhh----hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence 6889999999999999998776 88999999999999999987 56778999999999999999999778875688
Q ss_pred CCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc-ccCCCCCCEEeCCCCccCccCccc-ccCCCCC
Q 022302 201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNYYIHSSLEG-LANLTNL 278 (299)
Q Consensus 201 ~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L 278 (299)
.+++|++|++++| .+.+..+ ..+. ++|++|++++|+++..+. +..+++|++|++++|+++ .+|.. +..+++|
T Consensus 397 ~l~~L~~L~Ls~N--~l~~~~~-~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L 470 (520)
T 2z7x_B 397 WTKSLLSLNMSSN--ILTDTIF-RCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSL 470 (520)
T ss_dssp CCTTCCEEECCSS--CCCGGGG-GSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred cCccCCEEECcCC--CCCcchh-hhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcc
Confidence 9999999999999 7777666 3332 799999999999998764 779999999999999999 56665 8999999
Q ss_pred CEEecCCCCCCCccC
Q 022302 279 QVLDLSDNQNLTTLG 293 (299)
Q Consensus 279 ~~L~l~~N~l~g~ip 293 (299)
++|++++|++.+..+
T Consensus 471 ~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 471 QKIWLHTNPWDCSCP 485 (520)
T ss_dssp CEEECCSSCBCCCHH
T ss_pred cEEECcCCCCcccCC
Confidence 999999999987643
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=5.3e-20 Score=175.26 Aligned_cols=166 Identities=22% Similarity=0.205 Sum_probs=115.2
Q ss_pred cccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcch
Q 022302 116 LLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRT 195 (299)
Q Consensus 116 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 195 (299)
.+++..|+++++|++|++++|.+++..+. .|..+++|++|++++|.+++..|..++.+++|++|++++|.+++. +
T Consensus 113 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~ 187 (597)
T 3oja_B 113 YLPPHVFQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D 187 (597)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C
T ss_pred CCCHHHHcCCCCCCEEEeeCCCCCCCCHH----HhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C
Confidence 34556788999999999999999987765 678899999999999999988888899999999999999887742 2
Q ss_pred hh-----------------------------------------------------------hhcCCCCCCEEECCCCcCC
Q 022302 196 KQ-----------------------------------------------------------GLANLRYLQVLDLSGNFNI 216 (299)
Q Consensus 196 ~~-----------------------------------------------------------~~~~l~~L~~L~Ls~n~~~ 216 (299)
.. .+..+++|++|++++| .
T Consensus 188 ~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N--~ 265 (597)
T 3oja_B 188 LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN--E 265 (597)
T ss_dssp GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSS--C
T ss_pred hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCC--c
Confidence 11 2344455555555555 4
Q ss_pred CCCccchhhhccCCCCcEEECCCCCCCCccc-ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCC
Q 022302 217 TSGSLTRLGLANLTNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLT 290 (299)
Q Consensus 217 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g 290 (299)
+.+..| ..+..+++|+.|++++|.+++.+. +..+++|+.|+|++|.++ .+|..+..+++|++|++++|++.+
T Consensus 266 l~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 266 LEKIMY-HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp CCEEES-GGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred cCCCCH-HHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC
Confidence 544444 455666666666666666665543 344566666666666666 455556666666666666666654
No 51
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=9.4e-20 Score=164.54 Aligned_cols=165 Identities=22% Similarity=0.206 Sum_probs=102.7
Q ss_pred ccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchh
Q 022302 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK 196 (299)
Q Consensus 117 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 196 (299)
+.+..++++++|++|++++|.++...+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++++. +.
T Consensus 108 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~ 182 (390)
T 3o6n_A 108 LPPHVFQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DL 182 (390)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-CG
T ss_pred CCHHHhcCCCCCCEEECCCCccCcCCHH----HhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-cc
Confidence 3445677788888888888888866554 467788888888888888776677777788888888887776632 11
Q ss_pred h-----------------------------------------------------------hhcCCCCCCEEECCCCcCCC
Q 022302 197 Q-----------------------------------------------------------GLANLRYLQVLDLSGNFNIT 217 (299)
Q Consensus 197 ~-----------------------------------------------------------~~~~l~~L~~L~Ls~n~~~~ 217 (299)
. .+..+++|++|++++| .+
T Consensus 183 ~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n--~l 260 (390)
T 3o6n_A 183 SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN--EL 260 (390)
T ss_dssp GGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSS--CC
T ss_pred ccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCC--cC
Confidence 1 2334445555555555 44
Q ss_pred CCccchhhhccCCCCcEEECCCCCCCCccc-ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCC
Q 022302 218 SGSLTRLGLANLTNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLT 290 (299)
Q Consensus 218 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g 290 (299)
.+..+ ..+..+++|++|++++|++++.+. +..+++|++|++++|+++ .+|+.+..+++|++|++++|++.+
T Consensus 261 ~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~ 332 (390)
T 3o6n_A 261 EKIMY-HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT 332 (390)
T ss_dssp CEEES-GGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred CCcCh-hHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce
Confidence 44434 455555566666666665555433 344556666666666655 445555555666666666666543
No 52
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=2.7e-20 Score=177.20 Aligned_cols=166 Identities=25% Similarity=0.254 Sum_probs=121.5
Q ss_pred cccCCCCCccEEeCCCCCCCCcch-hhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhh
Q 022302 120 SLFHPFEELQRLDLPGNWFTGIYE-NRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG 198 (299)
Q Consensus 120 ~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~ 198 (299)
..+..+++|++|++++|.+.+..+ . .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..++..
T Consensus 393 ~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 468 (606)
T 3vq2_A 393 ANFMGLEELQHLDFQHSTLKRVTEFS----AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468 (606)
T ss_dssp CCCTTCTTCCEEECTTSEEESTTTTT----TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred hhccCCCCCCeeECCCCccCCccChh----hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh
Confidence 456677777777777777777655 3 56777788888888888777777777777888888888887776433336
Q ss_pred hcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCC
Q 022302 199 LANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLT 276 (299)
Q Consensus 199 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 276 (299)
+..+++|++|++++| .+.+..| ..+..+++|++|++++|++++.. .+..+++|+.|++++|+++ .+|+.+..++
T Consensus 469 ~~~l~~L~~L~Ls~n--~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~ 544 (606)
T 3vq2_A 469 FANTTNLTFLDLSKC--QLEQISW-GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFP 544 (606)
T ss_dssp CTTCTTCCEEECTTS--CCCEECT-TTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSC
T ss_pred hccCCCCCEEECCCC--cCCccCh-hhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhc
Confidence 777788888888887 6666555 66777788888888888877763 3777778888888888877 5666677776
Q ss_pred -CCCEEecCCCCCCCccC
Q 022302 277 -NLQVLDLSDNQNLTTLG 293 (299)
Q Consensus 277 -~L~~L~l~~N~l~g~ip 293 (299)
+|++|++++|++.+..+
T Consensus 545 ~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 545 KSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TTCCEEECCSCCCCCSST
T ss_pred ccCcEEEccCCCcccCCc
Confidence 48888888888776444
No 53
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=9.2e-21 Score=180.49 Aligned_cols=166 Identities=25% Similarity=0.204 Sum_probs=134.7
Q ss_pred cccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccch-HhhccCCCCcEEeCCCCcCCCcchhhh
Q 022302 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL-PYLNTLTSLTTLILSDNSIEGSRTKQG 198 (299)
Q Consensus 120 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~ 198 (299)
..+..+++|++|++++|.+.+.. . .+..+++|++|++++|.+.+..| ..+..+++|++|++++|.+.+..|. .
T Consensus 370 ~~~~~~~~L~~L~L~~n~l~~~~-~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~ 443 (606)
T 3vq2_A 370 YSDLGTNSLRHLDLSFNGAIIMS-A----NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG-I 443 (606)
T ss_dssp HHHHCCSCCCEEECCSCSEEEEC-C----CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT-T
T ss_pred hhhccCCcccEeECCCCccccch-h----hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh-h
Confidence 44566777777888777776644 3 67788888888888888877666 5778888888899888888865554 6
Q ss_pred hcCCCCCCEEECCCCcCCCCCc-cchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccCccCcccccCC
Q 022302 199 LANLRYLQVLDLSGNFNITSGS-LTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANL 275 (299)
Q Consensus 199 ~~~l~~L~~L~Ls~n~~~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~p~~l~~l 275 (299)
+..+++|++|++++| .+.+. .| ..+..+++|++|++++|++++.++ +..+++|++|++++|++++..|..+..+
T Consensus 444 ~~~l~~L~~L~l~~n--~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 520 (606)
T 3vq2_A 444 FLGLTSLNTLKMAGN--SFKDNTLS-NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520 (606)
T ss_dssp TTTCTTCCEEECTTC--EEGGGEEC-SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTC
T ss_pred hcCCCCCCEEECCCC--cCCCcchH-HhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCC
Confidence 888899999999998 77664 45 678889999999999999887653 7888999999999999998889999999
Q ss_pred CCCCEEecCCCCCCCccCCC
Q 022302 276 TNLQVLDLSDNQNLTTLGKP 295 (299)
Q Consensus 276 ~~L~~L~l~~N~l~g~ip~~ 295 (299)
++|++|++++|+++ .+|+.
T Consensus 521 ~~L~~L~l~~N~l~-~~p~~ 539 (606)
T 3vq2_A 521 YSLSTLDCSFNRIE-TSKGI 539 (606)
T ss_dssp TTCCEEECTTSCCC-CEESC
T ss_pred CcCCEEECCCCcCc-ccCHh
Confidence 99999999999987 57765
No 54
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=3.5e-20 Score=171.62 Aligned_cols=165 Identities=25% Similarity=0.272 Sum_probs=94.1
Q ss_pred cCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcC
Q 022302 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN 201 (299)
Q Consensus 122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~ 201 (299)
+.++++|++|++++|.+.+..+. .|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ ++...+..
T Consensus 124 ~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~ 198 (477)
T 2id5_A 124 FQDLYNLKSLEVGDNDLVYISHR----AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA-IRDYSFKR 198 (477)
T ss_dssp TTTCTTCCEEEECCTTCCEECTT----SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE-ECTTCSCS
T ss_pred ccccccCCEEECCCCccceeChh----hccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE-eChhhccc
Confidence 34444444444444444444333 44444445555555554444444444444555555555544443 22223444
Q ss_pred CCCCCEEECCCCcCCCCC-----------------------ccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCE
Q 022302 202 LRYLQVLDLSGNFNITSG-----------------------SLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEA 256 (299)
Q Consensus 202 l~~L~~L~Ls~n~~~~~~-----------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~ 256 (299)
+++|++|++++| ...+ .++...+..+++|++|++++|.+++.+. +..+++|+.
T Consensus 199 l~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (477)
T 2id5_A 199 LYRLKVLEISHW--PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276 (477)
T ss_dssp CTTCCEEEEECC--TTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCE
T ss_pred CcccceeeCCCC--ccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCE
Confidence 444444444443 2221 1222456667777777777777776543 677788888
Q ss_pred EeCCCCccCccCcccccCCCCCCEEecCCCCCCCccC
Q 022302 257 LDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG 293 (299)
Q Consensus 257 L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip 293 (299)
|++++|++++..|..+..+++|++|++++|++++..+
T Consensus 277 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 313 (477)
T 2id5_A 277 IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE 313 (477)
T ss_dssp EECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCG
T ss_pred EECCCCccceECHHHhcCcccCCEEECCCCcCceeCH
Confidence 8888888887777888888888888888888876433
No 55
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=2.1e-19 Score=157.34 Aligned_cols=168 Identities=30% Similarity=0.396 Sum_probs=133.1
Q ss_pred CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc
Q 022302 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (299)
Q Consensus 92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 170 (299)
.+++.+++++ .+.+ +.+ +..+++|++|++++|.+.+. + .+..+++|++|++++|.+++.
T Consensus 63 ~~L~~L~L~~n~i~~-----------~~~--~~~l~~L~~L~L~~n~l~~~-~-----~~~~l~~L~~L~l~~n~l~~~- 122 (308)
T 1h6u_A 63 NNLIGLELKDNQITD-----------LAP--LKNLTKITELELSGNPLKNV-S-----AIAGLQSIKTLDLTSTQITDV- 122 (308)
T ss_dssp TTCCEEECCSSCCCC-----------CGG--GTTCCSCCEEECCSCCCSCC-G-----GGTTCTTCCEEECTTSCCCCC-
T ss_pred CCCCEEEccCCcCCC-----------Chh--HccCCCCCEEEccCCcCCCc-h-----hhcCCCCCCEEECCCCCCCCc-
Confidence 4567777776 4443 112 77888899999999988875 2 578888999999999988764
Q ss_pred hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccC
Q 022302 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAK 250 (299)
Q Consensus 171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~ 250 (299)
+. +..+++|++|++++|++++ ++. +..+++|++|++++| .+.+. + .+..+++|+.|++++|++++.+++..
T Consensus 123 ~~-l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n--~l~~~-~--~l~~l~~L~~L~l~~n~l~~~~~l~~ 193 (308)
T 1h6u_A 123 TP-LAGLSNLQVLYLDLNQITN-ISP--LAGLTNLQYLSIGNA--QVSDL-T--PLANLSKLTTLKADDNKISDISPLAS 193 (308)
T ss_dssp GG-GTTCTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECCSS--CCCCC-G--GGTTCTTCCEEECCSSCCCCCGGGGG
T ss_pred hh-hcCCCCCCEEECCCCccCc-Ccc--ccCCCCccEEEccCC--cCCCC-h--hhcCCCCCCEEECCCCccCcChhhcC
Confidence 33 7888999999999998885 443 788889999999998 66543 3 27788899999999999988888888
Q ss_pred CCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCC
Q 022302 251 LKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLT 290 (299)
Q Consensus 251 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g 290 (299)
+++|++|++++|++++..+ +..+++|++|++++|++++
T Consensus 194 l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 194 LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 8999999999999885443 7888999999999998865
No 56
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=1.3e-19 Score=152.03 Aligned_cols=135 Identities=27% Similarity=0.258 Sum_probs=117.1
Q ss_pred CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL 205 (299)
Q Consensus 126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L 205 (299)
++|++|++++|.+++..+. .+..+++|++|++++|+++...+..+..+++|++|+|++|++++ ++...+..+++|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L 114 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPG----VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHL 114 (229)
T ss_dssp TTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred CCCCEEEcCCCccCccCHH----HhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc-cChhHhCcchhh
Confidence 7899999999999998887 88999999999999999987666778899999999999999985 555578899999
Q ss_pred CEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccCccCc
Q 022302 206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSL 269 (299)
Q Consensus 206 ~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~p 269 (299)
++|++++| .+. .+| ..+..+++|++|++++|++++.+. +..+++|+.|++++|.+....+
T Consensus 115 ~~L~Ls~N--~l~-~lp-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 115 KELFMCCN--KLT-ELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CEEECCSS--CCC-SCC-TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CeEeccCC--ccc-ccC-cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 99999999 555 566 677899999999999999988763 7788999999999999886544
No 57
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=1.4e-19 Score=158.49 Aligned_cols=170 Identities=29% Similarity=0.317 Sum_probs=144.0
Q ss_pred CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc
Q 022302 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (299)
Q Consensus 92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 170 (299)
.+++.+++.+ .+.. ...+..+++|++|++++|.+.+.. .+..+++|++|++++|.+++.
T Consensus 41 ~~L~~L~l~~~~i~~-------------l~~~~~l~~L~~L~L~~n~i~~~~------~~~~l~~L~~L~L~~n~l~~~- 100 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-------------IEGVQYLNNLIGLELKDNQITDLA------PLKNLTKITELELSGNPLKNV- 100 (308)
T ss_dssp HTCCEEECTTSCCCC-------------CTTGGGCTTCCEEECCSSCCCCCG------GGTTCCSCCEEECCSCCCSCC-
T ss_pred CCcCEEEeeCCCccC-------------chhhhccCCCCEEEccCCcCCCCh------hHccCCCCCEEEccCCcCCCc-
Confidence 3577788877 4433 224778999999999999998864 378899999999999999864
Q ss_pred hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccC
Q 022302 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAK 250 (299)
Q Consensus 171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~ 250 (299)
+ .+..+++|++|++++|++++ ++ .+..+++|++|++++| .+.+. + .+..+++|++|++++|.+++.+.+..
T Consensus 101 ~-~~~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n--~l~~~-~--~l~~l~~L~~L~l~~n~l~~~~~l~~ 171 (308)
T 1h6u_A 101 S-AIAGLQSIKTLDLTSTQITD-VT--PLAGLSNLQVLYLDLN--QITNI-S--PLAGLTNLQYLSIGNAQVSDLTPLAN 171 (308)
T ss_dssp G-GGTTCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECCSS--CCCCC-G--GGGGCTTCCEEECCSSCCCCCGGGTT
T ss_pred h-hhcCCCCCCEEECCCCCCCC-ch--hhcCCCCCCEEECCCC--ccCcC-c--cccCCCCccEEEccCCcCCCChhhcC
Confidence 3 68899999999999999986 55 3899999999999999 66554 3 27899999999999999999888999
Q ss_pred CCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCcc
Q 022302 251 LKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTL 292 (299)
Q Consensus 251 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~i 292 (299)
+++|+.|++++|.+++..+ +..+++|++|++++|++.+..
T Consensus 172 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG
T ss_pred CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc
Confidence 9999999999999995443 889999999999999998654
No 58
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.83 E-value=1e-19 Score=171.95 Aligned_cols=161 Identities=29% Similarity=0.299 Sum_probs=138.6
Q ss_pred CCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCc--cchHhhccCCCCcEEeCCCCcCCCcchhhhhc
Q 022302 123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND--SILPYLNTLTSLTTLILSDNSIEGSRTKQGLA 200 (299)
Q Consensus 123 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 200 (299)
..+++|++|++++|.+++..|. .+..+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|...+.
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 425 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQ----GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA 425 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTT----TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC
T ss_pred cCCCCceEEECCCCccccchhh----hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc
Confidence 6789999999999999998776 88999999999999999987 34567889999999999999999767776688
Q ss_pred CCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc-ccCCCCCCEEeCCCCccCccCccc-ccCCCCC
Q 022302 201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNYYIHSSLEG-LANLTNL 278 (299)
Q Consensus 201 ~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L 278 (299)
.+++|++|++++| .+.+..+ ..+. ++|++|++++|+++..+. +..+++|++|++++|+++ .+|+. +..+++|
T Consensus 426 ~l~~L~~L~l~~n--~l~~~~~-~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L 499 (562)
T 3a79_B 426 WAESILVLNLSSN--MLTGSVF-RCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSL 499 (562)
T ss_dssp CCTTCCEEECCSS--CCCGGGG-SSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTC
T ss_pred CcccCCEEECCCC--CCCcchh-hhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCC
Confidence 8999999999999 7766655 3322 699999999999998764 668999999999999999 56665 8999999
Q ss_pred CEEecCCCCCCCccC
Q 022302 279 QVLDLSDNQNLTTLG 293 (299)
Q Consensus 279 ~~L~l~~N~l~g~ip 293 (299)
++|++++|++.+..|
T Consensus 500 ~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 500 QYIWLHDNPWDCTCP 514 (562)
T ss_dssp CCEECCSCCBCCCHH
T ss_pred CEEEecCCCcCCCcc
Confidence 999999999987654
No 59
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=1e-19 Score=152.68 Aligned_cols=153 Identities=21% Similarity=0.201 Sum_probs=130.2
Q ss_pred EEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEE
Q 022302 130 RLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLD 209 (299)
Q Consensus 130 ~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~ 209 (299)
.++.+++.+..+.. .+ .++|++|++++|.+++..|..+..+++|++|+|++|++.. ++...|..+++|++|+
T Consensus 23 ~v~c~~~~l~~ip~-----~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 23 TVDCRSKRHASVPA-----GI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLD 94 (229)
T ss_dssp EEECTTSCCSSCCS-----CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEE
T ss_pred EeEccCCCcCccCC-----CC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC-cChhhcccCCCcCEEE
Confidence 35555666655433 22 3789999999999999889999999999999999999974 6665789999999999
Q ss_pred CCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc-cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCC
Q 022302 210 LSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ-GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQN 288 (299)
Q Consensus 210 Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l 288 (299)
+++| .+.+..+ ..+..+++|++|++++|+++..+ .+..+++|+.|++++|++++..+..+..+++|++|++++|++
T Consensus 95 Ls~N--~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 95 LGTN--QLTVLPS-AVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCSS--CCCCCCT-TTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred CCCC--cCCccCh-hHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 9999 7765544 67889999999999999999875 488999999999999999977777899999999999999999
Q ss_pred CCccC
Q 022302 289 LTTLG 293 (299)
Q Consensus 289 ~g~ip 293 (299)
.+..+
T Consensus 172 ~c~c~ 176 (229)
T 3e6j_A 172 DCECR 176 (229)
T ss_dssp CTTBG
T ss_pred cCCcc
Confidence 87654
No 60
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.83 E-value=3e-20 Score=152.24 Aligned_cols=154 Identities=19% Similarity=0.276 Sum_probs=130.4
Q ss_pred CCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCC
Q 022302 123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL 202 (299)
Q Consensus 123 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l 202 (299)
..+++|++|++++|.+... + .+..+++|++|++++|.++. +..+..+++|++|++++|++++..+. .+..+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l-~-----~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l 111 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDL-T-----GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIP-NLSGL 111 (197)
T ss_dssp HHHHTCCEEEEESSCCSCC-T-----TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSC-CCTTC
T ss_pred hhcCCccEEeccCCCccCh-H-----HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccCh-hhcCC
Confidence 5577899999999999854 3 47889999999999997754 34788999999999999999875565 78999
Q ss_pred CCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCC-CCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEE
Q 022302 203 RYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCG-ITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVL 281 (299)
Q Consensus 203 ~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 281 (299)
++|++|++++| .+.+..+ ..+..+++|++|++++|. ++..+.+..+++|+.|++++|.+++ ++ .+..+++|++|
T Consensus 112 ~~L~~L~Ls~n--~i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L 186 (197)
T 4ezg_A 112 TSLTLLDISHS--AHDDSIL-TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQL 186 (197)
T ss_dssp TTCCEEECCSS--BCBGGGH-HHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEE
T ss_pred CCCCEEEecCC--ccCcHhH-HHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEE
Confidence 99999999999 7776666 678999999999999998 8888889999999999999999995 44 68899999999
Q ss_pred ecCCCCCCC
Q 022302 282 DLSDNQNLT 290 (299)
Q Consensus 282 ~l~~N~l~g 290 (299)
++++|++.+
T Consensus 187 ~l~~N~i~~ 195 (197)
T 4ezg_A 187 YAFSQTIGG 195 (197)
T ss_dssp EECBC----
T ss_pred EeeCcccCC
Confidence 999999864
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=2.6e-20 Score=163.79 Aligned_cols=182 Identities=21% Similarity=0.246 Sum_probs=125.0
Q ss_pred cEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccch
Q 022302 93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL 171 (299)
Q Consensus 93 ~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 171 (299)
+++.+++++ .+.+ ..+..+.++++|++|++++|.+++..+ +..+++|++|++++|.+++..+
T Consensus 35 ~L~~L~L~~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~l~~L~~L~Ls~n~l~~l~~ 97 (317)
T 3o53_A 35 NVKELDLSGNPLSQ-----------ISAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQELLV 97 (317)
T ss_dssp GCSEEECTTSCCCC-----------CCHHHHTTCTTCCEEECTTSCCEEEEE------ETTCTTCCEEECCSSEEEEEEE
T ss_pred CCCEEECcCCccCc-----------CCHHHhhCCCcCCEEECCCCcCCcchh------hhhcCCCCEEECcCCccccccC
Confidence 566777766 4443 334567888888888888888877543 6777788888887776654211
Q ss_pred H-h---------------hccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEE
Q 022302 172 P-Y---------------LNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKL 235 (299)
Q Consensus 172 ~-~---------------l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L 235 (299)
. . ...+++|++|++++|++++ +++..+..+++|++|++++| .+.+..+......+++|++|
T Consensus 98 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 98 GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLN--EIDTVNFAELAASSDTLEHL 174 (317)
T ss_dssp CTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCS-GGGBCTGGGSSEEEEECTTS--CCCEEEGGGGGGGTTTCCEE
T ss_pred CCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCC-ccchhhhccCCCCEEECCCC--CCCcccHHHHhhccCcCCEE
Confidence 0 0 1124556666666666664 33336777788888888888 66655552233467888888
Q ss_pred ECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCCc
Q 022302 236 DLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL 296 (299)
Q Consensus 236 ~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~~ 296 (299)
++++|.+++.+....+++|++|++++|.+++ +|+.+..+++|++|++++|++. .+|+.+
T Consensus 175 ~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~ 233 (317)
T 3o53_A 175 NLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKAL 233 (317)
T ss_dssp ECTTSCCCEEECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTC
T ss_pred ECCCCcCcccccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHh
Confidence 8888888877666667888888888888884 4445778888888888888887 466654
No 62
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=1.5e-19 Score=150.69 Aligned_cols=134 Identities=23% Similarity=0.268 Sum_probs=88.7
Q ss_pred CccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCC
Q 022302 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ 206 (299)
Q Consensus 127 ~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~ 206 (299)
.+++|++++|.+++..+.. .|..+++|++|++++|.+++..+..|..+++|++|++++|++++ +++..|..+++|+
T Consensus 33 ~~~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~ 108 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATG---IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLK 108 (220)
T ss_dssp TCSEEECCSSCCCEECCCC---CGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCGGGGTTCSSCC
T ss_pred CCCEEEcCCCcCCccCchh---hhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc-cCHhHhcCCcCCC
Confidence 4567777777777764420 35667777777777777776666667777777777777777765 3333567777777
Q ss_pred EEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCcc
Q 022302 207 VLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHS 267 (299)
Q Consensus 207 ~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~ 267 (299)
+|++++| .+.+..+ ..+..+++|++|++++|++++.+ .+..+++|+.|++++|.+.+.
T Consensus 109 ~L~Ls~N--~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 109 TLMLRSN--RITCVGN-DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp EEECTTS--CCCCBCT-TSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred EEECCCC--cCCeECH-hHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 7777777 5555544 55666677777777777766653 266666677777777666644
No 63
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.82 E-value=3e-20 Score=175.43 Aligned_cols=167 Identities=23% Similarity=0.210 Sum_probs=133.0
Q ss_pred cccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccch-HhhccCCCCcEEeCCCCcCCCcchhhh
Q 022302 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL-PYLNTLTSLTTLILSDNSIEGSRTKQG 198 (299)
Q Consensus 120 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~ 198 (299)
..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+. .
T Consensus 367 ~~~~~~~~L~~L~l~~n~l~~~~~-----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~ 440 (570)
T 2z63_A 367 QSDFGTTSLKYLDLSFNGVITMSS-----NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-I 440 (570)
T ss_dssp HHHHTCSCCCEEECCSCSEEEEEE-----EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT-T
T ss_pred ccccccCccCEEECCCCccccccc-----cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh-h
Confidence 345667777888888777776654 46778888888888888776555 4677888888888888888765554 6
Q ss_pred hcCCCCCCEEECCCCcCCCC-CccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCC
Q 022302 199 LANLRYLQVLDLSGNFNITS-GSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANL 275 (299)
Q Consensus 199 ~~~l~~L~~L~Ls~n~~~~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 275 (299)
+..+++|++|++++| .+. +.+| ..+..+++|++|++++|++++.. .+..+++|++|++++|++++..|..+..+
T Consensus 441 ~~~l~~L~~L~l~~n--~l~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 517 (570)
T 2z63_A 441 FNGLSSLEVLKMAGN--SFQENFLP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517 (570)
T ss_dssp TTTCTTCCEEECTTC--EEGGGEEC-SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred hhcCCcCcEEECcCC--cCccccch-hhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcc
Confidence 888889999999988 665 4566 67888899999999999988763 37888999999999999998777888899
Q ss_pred CCCCEEecCCCCCCCccCCC
Q 022302 276 TNLQVLDLSDNQNLTTLGKP 295 (299)
Q Consensus 276 ~~L~~L~l~~N~l~g~ip~~ 295 (299)
++|++|++++|++++..|..
T Consensus 518 ~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 518 TSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TTCCEEECCSSCBCCCTTTT
T ss_pred cCCcEEEecCCcccCCCcch
Confidence 99999999999999888753
No 64
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=1.9e-19 Score=159.17 Aligned_cols=155 Identities=20% Similarity=0.240 Sum_probs=111.6
Q ss_pred CccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCc--cchHhhccC--------------------CCCcEEe
Q 022302 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND--SILPYLNTL--------------------TSLTTLI 184 (299)
Q Consensus 127 ~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l--------------------~~L~~L~ 184 (299)
+|++|++++|.+.+..+. .+..+++|++|++++|.++. ..+..+..+ ++|++|+
T Consensus 124 ~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~ 199 (332)
T 2ft3_A 124 SLVELRIHDNRIRKVPKG----VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELH 199 (332)
T ss_dssp TCCEEECCSSCCCCCCSG----GGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCB
T ss_pred cCCEEECCCCccCccCHh----HhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEE
Confidence 444444444444444433 46667777777777776642 333333332 3455555
Q ss_pred CCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc-ccCCCCCCEEeCCCCc
Q 022302 185 LSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNY 263 (299)
Q Consensus 185 L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~ 263 (299)
+++|++++. ++..+..+++|++|++++| .+.+..+ ..+..+++|++|++++|+++..+. +..+++|+.|++++|+
T Consensus 200 l~~n~i~~~-~~~~l~~l~~L~~L~L~~N--~l~~~~~-~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 200 LDHNKIQAI-ELEDLLRYSKLYRLGLGHN--QIRMIEN-GSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp CCSSCCCCC-CTTSSTTCTTCSCCBCCSS--CCCCCCT-TGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC
T ss_pred CCCCcCCcc-CHHHhcCCCCCCEEECCCC--cCCcCCh-hHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC
Confidence 555555543 3336888999999999999 7776555 678999999999999999997764 8899999999999999
Q ss_pred cCccCcccccC------CCCCCEEecCCCCCC
Q 022302 264 YIHSSLEGLAN------LTNLQVLDLSDNQNL 289 (299)
Q Consensus 264 l~~~~p~~l~~------l~~L~~L~l~~N~l~ 289 (299)
+++..+..+.. .++|+.|++++|++.
T Consensus 276 l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CCccChhHccccccccccccccceEeecCccc
Confidence 99776666654 467999999999987
No 65
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=4.9e-19 Score=146.08 Aligned_cols=155 Identities=26% Similarity=0.213 Sum_probs=132.1
Q ss_pred cEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEE
Q 022302 129 QRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVL 208 (299)
Q Consensus 129 ~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L 208 (299)
+.++.+++.++.... .-.++|++|++++|.+++..+..+..+++|++|++++|++++ ++...+..+++|++|
T Consensus 10 ~~v~c~~~~l~~~p~-------~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L 81 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT-------GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYL 81 (208)
T ss_dssp TEEECCSSCCSSCCS-------CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred CEEEecCCCccCCCC-------CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhcCCCCCcCEE
Confidence 456667777766533 235689999999999998777778999999999999999985 565578999999999
Q ss_pred ECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCC
Q 022302 209 DLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286 (299)
Q Consensus 209 ~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N 286 (299)
++++| .+.+..+ ..+..+++|++|++++|++++.+. +..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 82 ~Ls~n--~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 82 NLSTN--QLQSLPN-GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp ECCSS--CCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred ECCCC--cCCccCH-hHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 99999 6665444 668899999999999999998765 788999999999999999777777899999999999999
Q ss_pred CCCCccCC
Q 022302 287 QNLTTLGK 294 (299)
Q Consensus 287 ~l~g~ip~ 294 (299)
++.+..|.
T Consensus 159 ~~~~~~~~ 166 (208)
T 2o6s_A 159 PWDCTCPG 166 (208)
T ss_dssp CBCCCTTT
T ss_pred CeecCCCC
Confidence 99988875
No 66
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=4.5e-19 Score=156.50 Aligned_cols=181 Identities=26% Similarity=0.336 Sum_probs=118.5
Q ss_pred CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCC---------------------CcchhhhHHh
Q 022302 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFT---------------------GIYENRAYDS 149 (299)
Q Consensus 92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~---------------------~~~~~~~~~~ 149 (299)
.+++.+++++ .+.+ +.+..++++++|++|++++|.++ +..+. .
T Consensus 76 ~~L~~L~L~~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~----~ 140 (330)
T 1xku_A 76 KNLHTLILINNKISK-----------ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKS----V 140 (330)
T ss_dssp TTCCEEECCSSCCCC-----------BCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHH----H
T ss_pred CCCCEEECCCCcCCe-----------eCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHh----H
Confidence 4577777776 4443 22334555555555555555544 33332 4
Q ss_pred hcCCCCCCEEECCCCCCCc--cchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhc
Q 022302 150 FGSLKQLKMLNLGDNFFND--SILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLA 227 (299)
Q Consensus 150 l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~ 227 (299)
+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++. +|. .+ .++|++|++++| .+.+..+ ..+.
T Consensus 141 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~-~~--~~~L~~L~l~~n--~l~~~~~-~~~~ 213 (330)
T 1xku_A 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQ-GL--PPSLTELHLDGN--KITKVDA-ASLK 213 (330)
T ss_dssp HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCS-SC--CTTCSEEECTTS--CCCEECT-GGGT
T ss_pred hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCc-cc--cccCCEEECCCC--cCCccCH-HHhc
Confidence 5555666666666665532 344455556666666666665553 333 11 156667777777 5555444 6788
Q ss_pred cCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCC
Q 022302 228 NLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKP 295 (299)
Q Consensus 228 ~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~ 295 (299)
.+++|++|++++|.+++.+ .+..+++|++|++++|.++ .+|..+..+++|++|++++|++++.-+..
T Consensus 214 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~ 282 (330)
T 1xku_A 214 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 282 (330)
T ss_dssp TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhh
Confidence 8899999999999988765 3778889999999999988 78888888999999999999987644433
No 67
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=3.2e-19 Score=154.96 Aligned_cols=168 Identities=33% Similarity=0.377 Sum_probs=143.3
Q ss_pred CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc
Q 022302 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (299)
Q Consensus 92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 170 (299)
.+++.+++++ .+.. ...+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ +
T Consensus 46 ~~L~~L~l~~~~i~~-------------~~~~~~l~~L~~L~L~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~-~ 105 (291)
T 1h6t_A 46 NSIDQIIANNSDIKS-------------VQGIQYLPNVTKLFLNGNKLTDIKP------LANLKNLGWLFLDENKVKD-L 105 (291)
T ss_dssp HTCCEEECTTSCCCC-------------CTTGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCC-G
T ss_pred CcccEEEccCCCccc-------------ChhHhcCCCCCEEEccCCccCCCcc------cccCCCCCEEECCCCcCCC-C
Confidence 3577788877 4443 2347788999999999999998643 7889999999999999986 3
Q ss_pred hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccC
Q 022302 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAK 250 (299)
Q Consensus 171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~ 250 (299)
+.+..+++|++|++++|++++ ++ .+..+++|++|++++| .+.+. ..+..+++|++|++++|++++.+++..
T Consensus 106 -~~l~~l~~L~~L~L~~n~i~~-~~--~l~~l~~L~~L~l~~n--~l~~~---~~l~~l~~L~~L~L~~N~l~~~~~l~~ 176 (291)
T 1h6t_A 106 -SSLKDLKKLKSLSLEHNGISD-IN--GLVHLPQLESLYLGNN--KITDI---TVLSRLTKLDTLSLEDNQISDIVPLAG 176 (291)
T ss_dssp -GGGTTCTTCCEEECTTSCCCC-CG--GGGGCTTCCEEECCSS--CCCCC---GGGGGCTTCSEEECCSSCCCCCGGGTT
T ss_pred -hhhccCCCCCEEECCCCcCCC-Ch--hhcCCCCCCEEEccCC--cCCcc---hhhccCCCCCEEEccCCccccchhhcC
Confidence 348999999999999999986 43 5889999999999999 66554 368899999999999999999888999
Q ss_pred CCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCC
Q 022302 251 LKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLT 290 (299)
Q Consensus 251 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g 290 (299)
+++|+.|++++|.+++ ++ .+..+++|+.|++++|++..
T Consensus 177 l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 177 LTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 9999999999999995 45 48999999999999999864
No 68
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=1.1e-19 Score=173.16 Aligned_cols=161 Identities=27% Similarity=0.222 Sum_probs=127.1
Q ss_pred CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL 205 (299)
Q Consensus 126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L 205 (299)
+++++|+|++|.+++..+. .|.++++|++|+|++|++++..+..|.++++|++|+|++|++++ +|+..|.++++|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~----~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSL 126 (635)
T ss_dssp TTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECGGGGTTCTTC
T ss_pred cCCCEEEeeCCCCCCCCHH----HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-CCHHHhcCCCCC
Confidence 3688899999998888776 78888999999999998887777788888999999999998874 666578888999
Q ss_pred CEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc---cccCCCCCCEEeCCCCccCccCcccccCCCCC----
Q 022302 206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ---GLAKLKNLEALDLSYNYYIHSSLEGLANLTNL---- 278 (299)
Q Consensus 206 ~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L---- 278 (299)
++|++++| .+.+..+ ..++.+++|++|++++|.++... .+..+++|++|++++|++++..|..+..+.++
T Consensus 127 ~~L~Ls~N--~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 127 QKLVAVET--NLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp CEEECTTS--CCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred CEEECCCC--cCCCCCh-hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhh
Confidence 99999988 6655433 56888889999999999887642 36778889999999998888777777654433
Q ss_pred CEEecCCCCCCCccCC
Q 022302 279 QVLDLSDNQNLTTLGK 294 (299)
Q Consensus 279 ~~L~l~~N~l~g~ip~ 294 (299)
..++++.|++....|.
T Consensus 204 ~~~~ls~n~l~~i~~~ 219 (635)
T 4g8a_A 204 LSLDLSLNPMNFIQPG 219 (635)
T ss_dssp CEEECTTCCCCEECTT
T ss_pred hhhhcccCcccccCcc
Confidence 4678888888654443
No 69
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=3.2e-19 Score=148.74 Aligned_cols=133 Identities=26% Similarity=0.317 Sum_probs=112.5
Q ss_pred CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL 205 (299)
Q Consensus 126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L 205 (299)
+++++|++++|.+++..+. .|..+++|++|++++|.+++..|..|..+++|++|+|++|+++. +|...|..+++|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~----~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPG----AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-LPKSLFEGLFSL 106 (220)
T ss_dssp TTCCEEECCSSCCCEECTT----SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred cCCCEEECCCCcCCCcCHh----HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc-cCHhHccCCCCC
Confidence 5789999999999988776 78889999999999999988778889999999999999999984 666567889999
Q ss_pred CEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccCc
Q 022302 206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIH 266 (299)
Q Consensus 206 ~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~ 266 (299)
++|++++| .+.+..+ ..+..+++|++|++++|++++.+. +..+++|+.|++++|.+..
T Consensus 107 ~~L~L~~N--~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 107 QLLLLNAN--KINCLRV-DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CEEECCSS--CCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CEEECCCC--CCCEeCH-HHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 99999999 7766655 678888889999999998887764 7778888888888888764
No 70
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=1.4e-19 Score=170.18 Aligned_cols=166 Identities=21% Similarity=0.157 Sum_probs=116.0
Q ss_pred cCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccch--HhhccCCCCcEEeCCCCcCCCcchhhhh
Q 022302 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL--PYLNTLTSLTTLILSDNSIEGSRTKQGL 199 (299)
Q Consensus 122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 199 (299)
+.++++|++|++++|.+.+..+.. ...+..+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|. .+
T Consensus 330 ~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~ 406 (549)
T 2z81_A 330 SQHLKSLEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPD-SC 406 (549)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHH-HTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCS-CC
T ss_pred HhcCccccEEEccCCccccccccc-hhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCCh-hh
Confidence 356778888888888887765421 1135677788888888888775432 45777788888888888777 4665 56
Q ss_pred cCCCCCCEEECCCCcCCCCCccchh-----------------hhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCC
Q 022302 200 ANLRYLQVLDLSGNFNITSGSLTRL-----------------GLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYN 262 (299)
Q Consensus 200 ~~l~~L~~L~Ls~n~~~~~~~~~~~-----------------~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N 262 (299)
..+++|++|++++| .+.. ++.. ....+++|++|++++|+++..+....+++|+.|++++|
T Consensus 407 ~~~~~L~~L~Ls~N--~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 407 QWPEKMRFLNLSST--GIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRN 483 (549)
T ss_dssp CCCTTCCEEECTTS--CCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSS
T ss_pred cccccccEEECCCC--Cccc-ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCcccCccCCEEecCCC
Confidence 67777777777777 3321 1100 11356777888888888777666667788888888888
Q ss_pred ccCccCcccccCCCCCCEEecCCCCCCCccC
Q 022302 263 YYIHSSLEGLANLTNLQVLDLSDNQNLTTLG 293 (299)
Q Consensus 263 ~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip 293 (299)
++++..|+.+..+++|++|++++|++.+..|
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 484 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 8887777778888888888888888877665
No 71
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=2.7e-20 Score=163.14 Aligned_cols=164 Identities=22% Similarity=0.159 Sum_probs=137.6
Q ss_pred CCCccEEeCCCCCCCCcchhhhHHhh--cCCCCCCEEECCCCCCCccch----HhhccCCCCcEEeCCCCcCCCcchhhh
Q 022302 125 FEELQRLDLPGNWFTGIYENRAYDSF--GSLKQLKMLNLGDNFFNDSIL----PYLNTLTSLTTLILSDNSIEGSRTKQG 198 (299)
Q Consensus 125 l~~L~~L~L~~n~l~~~~~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~~p~~~ 198 (299)
+++|++|++++|.+.+..|. .+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+. ++..
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~----~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~ 164 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPP----LPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAF-SCEQ 164 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCC----CSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCC-CTTS
T ss_pred cCceeEEEeeCCEeccchhh----hhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchh-hHHH
Confidence 45699999999999998886 66 889999999999999987544 3456799999999999999864 4447
Q ss_pred hcCCCCCCEEECCCCcCCCCCc--cc-hhhhccCCCCcEEECCCCCCCCccc-----ccCCCCCCEEeCCCCccCccCcc
Q 022302 199 LANLRYLQVLDLSGNFNITSGS--LT-RLGLANLTNLKKLDLGSCGITTIQG-----LAKLKNLEALDLSYNYYIHSSLE 270 (299)
Q Consensus 199 ~~~l~~L~~L~Ls~n~~~~~~~--~~-~~~~~~l~~L~~L~Ls~n~l~~~~~-----l~~l~~L~~L~L~~N~l~~~~p~ 270 (299)
+..+++|++|++++| .+.+. ++ ...+..+++|++|++++|+++..+. +..+++|++|+|++|.+++..|+
T Consensus 165 ~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~ 242 (310)
T 4glp_A 165 VRAFPALTSLDLSDN--PGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP 242 (310)
T ss_dssp CCCCTTCCEEECCSC--TTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred hccCCCCCEEECCCC--CCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence 899999999999999 65542 22 1234678999999999999987653 46789999999999999988888
Q ss_pred cccCC---CCCCEEecCCCCCCCccCCCc
Q 022302 271 GLANL---TNLQVLDLSDNQNLTTLGKPL 296 (299)
Q Consensus 271 ~l~~l---~~L~~L~l~~N~l~g~ip~~~ 296 (299)
.+..+ ++|++|++++|+++ .+|..+
T Consensus 243 ~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~ 270 (310)
T 4glp_A 243 SAPRCMWSSALNSLNLSFAGLE-QVPKGL 270 (310)
T ss_dssp CCSSCCCCTTCCCEECCSSCCC-SCCSCC
T ss_pred hHHhccCcCcCCEEECCCCCCC-chhhhh
Confidence 88877 69999999999998 688765
No 72
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=5e-19 Score=170.78 Aligned_cols=170 Identities=26% Similarity=0.246 Sum_probs=106.5
Q ss_pred ccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCc--------------------------cchH
Q 022302 119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFND--------------------------SILP 172 (299)
Q Consensus 119 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--------------------------~~p~ 172 (299)
+..+..+++|++|++++|.+.+.++.. .+..+++|++|++++|++.+ ..|.
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~ 474 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTGQ---EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCSG---GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSC
T ss_pred hhhhhCCCCCCEEeCCCCcCccccCcc---cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCc
Confidence 445666677777777777666544321 45555555555555555433 3455
Q ss_pred hhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccc-------hhhhccCCCCcEEECCCCCCCCc
Q 022302 173 YLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLT-------RLGLANLTNLKKLDLGSCGITTI 245 (299)
Q Consensus 173 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~-------~~~~~~l~~L~~L~Ls~n~l~~~ 245 (299)
.+..+++|++|++++|++++ +++..+..+++|++|++++| .+.+..+ ...+..+++|++|++++|+++..
T Consensus 475 ~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i 551 (680)
T 1ziw_A 475 PFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHN--NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS--CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCC
T ss_pred ccccCCCCCEEECCCCCCCc-CChhhhccccccCEEeCCCC--CccccchhhccCCcchhhcCCCCCCEEECCCCCCCCC
Confidence 56666677777777777664 44445667777777777777 4433211 01256667777777777777765
Q ss_pred cc--ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCC
Q 022302 246 QG--LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGK 294 (299)
Q Consensus 246 ~~--l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~ 294 (299)
+. +..+++|+.|++++|++++..+..+..+++|++|++++|++++..|.
T Consensus 552 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~ 602 (680)
T 1ziw_A 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHH
T ss_pred CHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChh
Confidence 53 66777777777777777755555567777777777777777765443
No 73
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=177.84 Aligned_cols=91 Identities=27% Similarity=0.294 Sum_probs=49.7
Q ss_pred ccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHh--hccCCCCcEEeCCCCcCCCcchh
Q 022302 119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPY--LNTLTSLTTLILSDNSIEGSRTK 196 (299)
Q Consensus 119 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~ 196 (299)
+..|+++++|++|+|++|.+.+..|. .|.++++|++|++++|.+++.+|.. +.++++|++|++++|.+.+..+.
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~ 141 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSKIYFLHPD----AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141 (844)
T ss_dssp TTTTSSCTTCCEEECTTCCCCEECTT----SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC
T ss_pred HHHhcCCCCCCEEECCCCcCcccCHh----HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccc
Confidence 34455566666666666666555554 5555556666666655555544333 55555555555555555543332
Q ss_pred hhhcCCCCCCEEECCCC
Q 022302 197 QGLANLRYLQVLDLSGN 213 (299)
Q Consensus 197 ~~~~~l~~L~~L~Ls~n 213 (299)
..++++++|++|++++|
T Consensus 142 ~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 142 PSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp GGGGTCSSCCEEEEESS
T ss_pred hhHhhCCCCCEEECCCC
Confidence 34555555555555555
No 74
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.81 E-value=9.1e-19 Score=161.82 Aligned_cols=152 Identities=30% Similarity=0.363 Sum_probs=113.1
Q ss_pred ccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhc
Q 022302 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA 200 (299)
Q Consensus 121 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 200 (299)
.+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|++.+ +++ +.
T Consensus 238 ~l~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~--~~ 306 (466)
T 1o6v_A 238 TLASLTNLTDLDLANNQISNLAP------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED-ISP--IS 306 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSC-CGG--GG
T ss_pred hhhcCCCCCEEECCCCccccchh------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccC-chh--hc
Confidence 45566777777777777766532 5667777777777777776433 6777788888888887775 332 67
Q ss_pred CCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCE
Q 022302 201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQV 280 (299)
Q Consensus 201 ~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 280 (299)
.+++|++|++++| .+.+..+ +..+++|+.|++++|.+++.+.+..+++|+.|++++|++++..| +..+++|++
T Consensus 307 ~l~~L~~L~L~~n--~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 379 (466)
T 1o6v_A 307 NLKNLTYLTLYFN--NISDISP---VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 379 (466)
T ss_dssp GCTTCSEEECCSS--CCSCCGG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCE
T ss_pred CCCCCCEEECcCC--cCCCchh---hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch--hhcCCCCCE
Confidence 7788888888888 6665543 56778888888888888887778888888888888888887666 788888888
Q ss_pred EecCCCCCCC
Q 022302 281 LDLSDNQNLT 290 (299)
Q Consensus 281 L~l~~N~l~g 290 (299)
|++++|++++
T Consensus 380 L~l~~n~~~~ 389 (466)
T 1o6v_A 380 LGLNDQAWTN 389 (466)
T ss_dssp EECCCEEEEC
T ss_pred EeccCCcccC
Confidence 8888888876
No 75
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.80 E-value=1.2e-18 Score=154.61 Aligned_cols=156 Identities=30% Similarity=0.327 Sum_probs=124.0
Q ss_pred cCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcC
Q 022302 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN 201 (299)
Q Consensus 122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~ 201 (299)
+..+++|++|++++|.+.+.. .+..+++|++|++++|.+.+..+ +..+++|++|++++|++++ ++. +..
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~--~~~ 241 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIEDIS------PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP--LAN 241 (347)
T ss_dssp GGGCTTCSEEECTTSCCCCCG------GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG--GTT
T ss_pred hccCCCCCEEEccCCcccccc------cccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc--hhc
Confidence 556677777777777776543 25667777777777777765443 7788888888888888875 443 788
Q ss_pred CCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEE
Q 022302 202 LRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVL 281 (299)
Q Consensus 202 l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 281 (299)
+++|++|++++| .+.+. ..+..+++|++|++++|.+++.+.+..+++|+.|++++|.+++..|+.+..+++|++|
T Consensus 242 l~~L~~L~l~~n--~l~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 242 LSQLTWLEIGTN--QISDI---NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp CTTCCEEECCSS--CCCCC---GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred CCCCCEEECCCC--ccCCC---hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence 889999999988 55543 3577889999999999999888778889999999999999998888889999999999
Q ss_pred ecCCCCCCCccC
Q 022302 282 DLSDNQNLTTLG 293 (299)
Q Consensus 282 ~l~~N~l~g~ip 293 (299)
++++|++++..|
T Consensus 317 ~L~~n~l~~~~~ 328 (347)
T 4fmz_A 317 FLSQNHITDIRP 328 (347)
T ss_dssp ECCSSSCCCCGG
T ss_pred EccCCccccccC
Confidence 999999987655
No 76
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=1e-19 Score=159.90 Aligned_cols=156 Identities=20% Similarity=0.124 Sum_probs=127.4
Q ss_pred CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL 205 (299)
Q Consensus 126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L 205 (299)
++|++|++++|.+++..+ ..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+...+..+++|
T Consensus 99 ~~L~~L~l~~n~l~~~~~-------~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 171 (317)
T 3o53_A 99 PSIETLHAANNNISRVSC-------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (317)
T ss_dssp TTCCEEECCSSCCSEEEE-------CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred CCcCEEECCCCccCCcCc-------cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC
Confidence 566666666666666543 3467899999999999987777889999999999999999975554333578999
Q ss_pred CEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc-cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecC
Q 022302 206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ-GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLS 284 (299)
Q Consensus 206 ~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~ 284 (299)
++|++++| .+.+. + ....+++|++|++++|++++.+ .+..+++|+.|++++|.++ .+|+.+..+++|+.|+++
T Consensus 172 ~~L~L~~N--~l~~~-~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 172 EHLNLQYN--FIYDV-K--GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245 (317)
T ss_dssp CEEECTTS--CCCEE-E--CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECT
T ss_pred CEEECCCC--cCccc-c--cccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEcc
Confidence 99999999 66544 3 2345899999999999999875 4888999999999999999 578889999999999999
Q ss_pred CCCCC-CccCC
Q 022302 285 DNQNL-TTLGK 294 (299)
Q Consensus 285 ~N~l~-g~ip~ 294 (299)
+|++. +.+|.
T Consensus 246 ~N~~~~~~~~~ 256 (317)
T 3o53_A 246 GNGFHCGTLRD 256 (317)
T ss_dssp TCCCBHHHHHH
T ss_pred CCCccCcCHHH
Confidence 99998 55443
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=2e-19 Score=167.20 Aligned_cols=156 Identities=21% Similarity=0.128 Sum_probs=136.0
Q ss_pred CCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhc-CCC
Q 022302 125 FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA-NLR 203 (299)
Q Consensus 125 l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-~l~ 203 (299)
.++|++|++++|.+++..+. .+++|++|++++|.+++..|..++.+++|++|++++|.+++..|. .+. .++
T Consensus 98 ~~~L~~L~L~~N~l~~~~~~-------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~~l~ 169 (487)
T 3oja_A 98 GPSIETLHAANNNISRVSCS-------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-ELAASSD 169 (487)
T ss_dssp CTTCCEEECCSSCCCCEEEC-------CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG-GGGGGTT
T ss_pred CCCcCEEECcCCcCCCCCcc-------ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH-HHhhhCC
Confidence 48999999999999998653 468999999999999998888899999999999999999986665 454 899
Q ss_pred CCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc-ccCCCCCCEEeCCCCccCccCcccccCCCCCCEEe
Q 022302 204 YLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLD 282 (299)
Q Consensus 204 ~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 282 (299)
+|++|++++| .+.+. + ....+++|++|++++|.+++.++ +..+++|+.|++++|.+++ +|..+..+++|+.|+
T Consensus 170 ~L~~L~Ls~N--~l~~~-~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~ 243 (487)
T 3oja_A 170 TLEHLNLQYN--FIYDV-K--GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFD 243 (487)
T ss_dssp TCCEEECTTS--CCCEE-E--CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEE
T ss_pred cccEEecCCC--ccccc-c--ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEE
Confidence 9999999999 76655 3 24468999999999999998754 8889999999999999995 788899999999999
Q ss_pred cCCCCCC-CccCC
Q 022302 283 LSDNQNL-TTLGK 294 (299)
Q Consensus 283 l~~N~l~-g~ip~ 294 (299)
+++|++. +.+|.
T Consensus 244 l~~N~l~c~~~~~ 256 (487)
T 3oja_A 244 LRGNGFHCGTLRD 256 (487)
T ss_dssp CTTCCBCHHHHHH
T ss_pred cCCCCCcCcchHH
Confidence 9999998 55544
No 78
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=6.9e-19 Score=146.67 Aligned_cols=130 Identities=23% Similarity=0.250 Sum_probs=58.3
Q ss_pred CCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcE
Q 022302 155 QLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKK 234 (299)
Q Consensus 155 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~ 234 (299)
+|++|++++|.+++..+..+..+++|++|+|++|++++..| ..|..+++|++|++++| .+.. ++...+..+++|++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~Ls~N--~l~~-l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP-DAFQGLRSLNSLVLYGN--KITE-LPKSLFEGLFSLQL 108 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECT-TTTTTCSSCCEEECCSS--CCCC-CCTTTTTTCTTCCE
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH-HHhhCCcCCCEEECCCC--cCCc-cCHhHccCCCCCCE
Confidence 44444444444444333344444444444444444443222 24444444444444444 3332 22133444444444
Q ss_pred EECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCC
Q 022302 235 LDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQN 288 (299)
Q Consensus 235 L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l 288 (299)
|++++|++++.+ .+..+++|+.|+|++|.+++..+..+..+++|++|++++|++
T Consensus 109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 444444444432 244444444444444444444444444444444444444444
No 79
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=2.1e-19 Score=160.84 Aligned_cols=156 Identities=26% Similarity=0.193 Sum_probs=135.5
Q ss_pred CCccEEeCCCCCCCCcchhhhHHhhc-CCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCC
Q 022302 126 EELQRLDLPGNWFTGIYENRAYDSFG-SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRY 204 (299)
Q Consensus 126 ~~L~~L~L~~n~l~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~ 204 (299)
+.++.|+|++|.+++..+. .+. .+++|++|+|++|++++..+..|..+++|++|+|++|++++ ++...|..+++
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~----~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~ 113 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAE----WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT-LDEFLFSDLQA 113 (361)
T ss_dssp TTCSEEECCSSCCCEECTT----SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTT
T ss_pred CCCCEEECCCCCCCccChh----hhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc-CCHHHhCCCcC
Confidence 4589999999999998876 676 89999999999999998878889999999999999999985 56557899999
Q ss_pred CCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--c---cCCCCCCEEeCCCCccCccCcccccCCCC--
Q 022302 205 LQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--L---AKLKNLEALDLSYNYYIHSSLEGLANLTN-- 277 (299)
Q Consensus 205 L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l---~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-- 277 (299)
|++|+|++| .+.+..+ ..+..+++|++|+|++|+++..+. + ..+++|+.|+|++|++++..+..+..++.
T Consensus 114 L~~L~L~~N--~i~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~ 190 (361)
T 2xot_A 114 LEVLLLYNN--HIVVVDR-NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV 190 (361)
T ss_dssp CCEEECCSS--CCCEECT-TTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHH
T ss_pred CCEEECCCC--cccEECH-HHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhh
Confidence 999999999 7766555 788999999999999999998764 3 57899999999999999766677888877
Q ss_pred CCEEecCCCCCC
Q 022302 278 LQVLDLSDNQNL 289 (299)
Q Consensus 278 L~~L~l~~N~l~ 289 (299)
++.|++++|++.
T Consensus 191 l~~l~l~~N~~~ 202 (361)
T 2xot_A 191 KNGLYLHNNPLE 202 (361)
T ss_dssp HTTEECCSSCEE
T ss_pred cceEEecCCCcc
Confidence 488999999875
No 80
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=9.1e-19 Score=163.77 Aligned_cols=140 Identities=24% Similarity=0.242 Sum_probs=122.1
Q ss_pred cCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCC--cchhhhhcCCCCCCEEECCCCcCCCCCccchhhhcc
Q 022302 151 GSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEG--SRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLAN 228 (299)
Q Consensus 151 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~ 228 (299)
..+++|++|++++|.+++..|..+..+++|++|++++|++++ .+|. .+..+++|++|++++| .+.+.+|...+..
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~-~~~~l~~L~~L~Ls~N--~l~~~l~~~~~~~ 397 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE-MTTQMKSLQQLDISQN--SVSYDEKKGDCSW 397 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHH-HHTTCTTCCEEECCSS--CCBCCGGGCSCCC
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchH-HHhhCCCCCEEECCCC--cCCcccccchhcc
Confidence 678999999999999999889999999999999999999986 3443 6899999999999999 7777677456888
Q ss_pred CCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCC
Q 022302 229 LTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKP 295 (299)
Q Consensus 229 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~ 295 (299)
+++|++|++++|++++..+-.-.++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|..
T Consensus 398 l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~ 462 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDG 462 (520)
T ss_dssp CTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTT
T ss_pred CccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHH
Confidence 9999999999999986543222279999999999999 88988889999999999999998 57765
No 81
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=1.7e-18 Score=164.64 Aligned_cols=169 Identities=33% Similarity=0.374 Sum_probs=142.3
Q ss_pred CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc
Q 022302 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (299)
Q Consensus 92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 170 (299)
.+++.|++++ .+.. .+.+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+++ +
T Consensus 43 ~~L~~L~l~~n~i~~-------------l~~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~-l 102 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS-------------VQGIQYLPNVTKLFLNGNKLTDIKP------LTNLKNLGWLFLDENKIKD-L 102 (605)
T ss_dssp TTCCCCBCTTCCCCC-------------CTTGGGCTTCCEEECTTSCCCCCGG------GGGCTTCCEEECCSSCCCC-C
T ss_pred CCCCEEECcCCCCCC-------------ChHHccCCCCCEEEeeCCCCCCChh------hccCCCCCEEECcCCCCCC-C
Confidence 3566667766 4333 2347789999999999999998753 7889999999999999986 3
Q ss_pred hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccC
Q 022302 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAK 250 (299)
Q Consensus 171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~ 250 (299)
| .+..+++|++|+|++|.+.+ ++ .+..+++|+.|+|++| .+.+. ..+..+++|+.|+|++|.+++.+++..
T Consensus 103 ~-~l~~l~~L~~L~Ls~N~l~~-l~--~l~~l~~L~~L~Ls~N--~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~l~~ 173 (605)
T 1m9s_A 103 S-SLKDLKKLKSLSLEHNGISD-IN--GLVHLPQLESLYLGNN--KITDI---TVLSRLTKLDTLSLEDNQISDIVPLAG 173 (605)
T ss_dssp T-TSTTCTTCCEEECTTSCCCC-CG--GGGGCTTCSEEECCSS--CCCCC---GGGGSCTTCSEEECCSSCCCCCGGGTT
T ss_pred h-hhccCCCCCEEEecCCCCCC-Cc--cccCCCccCEEECCCC--ccCCc---hhhcccCCCCEEECcCCcCCCchhhcc
Confidence 3 68899999999999999986 44 5889999999999999 66654 368899999999999999999888999
Q ss_pred CCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCc
Q 022302 251 LKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTT 291 (299)
Q Consensus 251 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ 291 (299)
+++|+.|+|++|.+++ + +.+..+++|+.|+|++|++.+.
T Consensus 174 l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 174 LTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEECC
T ss_pred CCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcCC
Confidence 9999999999999996 3 4689999999999999998764
No 82
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.79 E-value=1.4e-20 Score=182.70 Aligned_cols=221 Identities=21% Similarity=0.129 Sum_probs=107.8
Q ss_pred chHHHHHHHHHhhhhccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEecCCCCcEEEeeeCc-cccccccCCCCcc
Q 022302 36 CLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMSSDCCDDWEGVKCNATTRRVMQLSLNE-TIKFNYSSGSGSA 114 (299)
Q Consensus 36 ~~~~~~~aL~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~C~~~~~~v~~l~l~~-~l~~~~~~~~~~~ 114 (299)
..+.+++++.++..+..... + ..-..|... ....+ .|.++.+.. .+++.+++.. .+...
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~---~--~~~~~~~~~----~~~~~-~~~~~~~s~--~~~~~l~L~~n~~~~~-------- 188 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSK---T--AKKQQPTGD----STPSG-TATNSAVST--PLTPKIELFANGKDEA-------- 188 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHH---T--TC----------------------------------------------------
T ss_pred ccccchhhhhhhhhhccccc---C--cccCCCcCC----CCccc-cCCCceecC--CccceEEeeCCCCCcc--------
Confidence 45678899999998874432 1 233456541 23445 899998864 6788888866 33320
Q ss_pred ccccccccCCCCCccEEeCCCCCCCC---------cchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeC
Q 022302 115 LLLNMSLFHPFEELQRLDLPGNWFTG---------IYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLIL 185 (299)
Q Consensus 115 ~~~~~~~~~~l~~L~~L~L~~n~l~~---------~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 185 (299)
+ ...++.++|+.|.+.+ ..+. .+..++.|+.|+|++|.+. .+|..+..+++|++|+|
T Consensus 189 ----~-----~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~----~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~L 254 (727)
T 4b8c_D 189 ----N-----QALLQHKKLSQYSIDEDDDIENRMVMPKD----SKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYL 254 (727)
T ss_dssp ----------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBC
T ss_pred ----h-----hhHhhcCccCcccccCccccccceecChh----hhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEe
Confidence 0 0112223333332222 2232 5677777777777777776 45655667777777777
Q ss_pred CCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc-ccCCCCCCEEeCCCCcc
Q 022302 186 SDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNYY 264 (299)
Q Consensus 186 ~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~l 264 (299)
++|.++ .+|. .+..+++|++|+|++| .+. .+| ..+..+++|++|+|++|.++.++. ++.+++|+.|+|++|.+
T Consensus 255 s~N~l~-~lp~-~~~~l~~L~~L~Ls~N--~l~-~lp-~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 255 NGNSLT-ELPA-EIKNLSNLRVLDLSHN--RLT-SLP-AELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp TTSCCS-CCCG-GGGGGTTCCEEECTTS--CCS-SCC-SSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred eCCcCc-ccCh-hhhCCCCCCEEeCcCC--cCC-ccC-hhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence 777777 5665 5777777777777777 555 456 567777777777777777776653 77777777777777777
Q ss_pred CccCcccccCCCC-CCEEecCCCCCCCccCCCc
Q 022302 265 IHSSLEGLANLTN-LQVLDLSDNQNLTTLGKPL 296 (299)
Q Consensus 265 ~~~~p~~l~~l~~-L~~L~l~~N~l~g~ip~~~ 296 (299)
++.+|+.+..+.. +..+++++|.++|.+|..+
T Consensus 329 ~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l 361 (727)
T 4b8c_D 329 EKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER 361 (727)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred CCCChHHHhhcchhhhHHhhccCcccCcCcccc
Confidence 7777766643321 1235566666666666544
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=2.6e-18 Score=149.22 Aligned_cols=154 Identities=29% Similarity=0.330 Sum_probs=135.2
Q ss_pred cCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcC
Q 022302 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN 201 (299)
Q Consensus 122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~ 201 (299)
+..+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|++++ ++ .+..
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-----~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~--~l~~ 110 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-----GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS--SLKD 110 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-----TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG--GGTT
T ss_pred hhhcCcccEEEccCCCcccC-h-----hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch--hhcc
Confidence 45678999999999999876 3 57889999999999999997554 8999999999999999986 44 4899
Q ss_pred CCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEE
Q 022302 202 LRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVL 281 (299)
Q Consensus 202 l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 281 (299)
+++|++|++++| .+.+. ..+..+++|++|++++|++++...+..+++|+.|++++|.+++..| +..+++|++|
T Consensus 111 l~~L~~L~L~~n--~i~~~---~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L 183 (291)
T 1h6t_A 111 LKKLKSLSLEHN--GISDI---NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 183 (291)
T ss_dssp CTTCCEEECTTS--CCCCC---GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred CCCCCEEECCCC--cCCCC---hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh--hcCCCccCEE
Confidence 999999999999 66553 3578999999999999999999889999999999999999996544 9999999999
Q ss_pred ecCCCCCCCccCC
Q 022302 282 DLSDNQNLTTLGK 294 (299)
Q Consensus 282 ~l~~N~l~g~ip~ 294 (299)
++++|++++ +|.
T Consensus 184 ~L~~N~i~~-l~~ 195 (291)
T 1h6t_A 184 YLSKNHISD-LRA 195 (291)
T ss_dssp ECCSSCCCB-CGG
T ss_pred ECCCCcCCC-Chh
Confidence 999999975 443
No 84
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=7.5e-19 Score=150.44 Aligned_cols=152 Identities=24% Similarity=0.299 Sum_probs=129.0
Q ss_pred ccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhc
Q 022302 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA 200 (299)
Q Consensus 121 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 200 (299)
.+..+++|++|++++|.++.. + .+..+++|++|++++|++++..+ +..+++|++|++++|++++ ++. +.
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l-~-----~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~--~~ 104 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSL-A-----GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNG--IP 104 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCC-T-----TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTT--CC
T ss_pred chhhcCcCcEEECcCCCcccc-h-----HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCc--cc
Confidence 456788999999999998865 3 57789999999999999987554 8899999999999999985 554 33
Q ss_pred CCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCE
Q 022302 201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQV 280 (299)
Q Consensus 201 ~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 280 (299)
. ++|++|++++| .+.+. + .+..+++|++|++++|++++.+.+..+++|+.|++++|++++. +.+..+++|+.
T Consensus 105 ~-~~L~~L~L~~N--~l~~~-~--~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~ 176 (263)
T 1xeu_A 105 S-ACLSRLFLDNN--ELRDT-D--SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNW 176 (263)
T ss_dssp C-SSCCEEECCSS--CCSBS-G--GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCE
T ss_pred c-CcccEEEccCC--ccCCC-h--hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch--HHhccCCCCCE
Confidence 4 89999999999 66553 3 5888999999999999999988889999999999999999965 67889999999
Q ss_pred EecCCCCCCCc
Q 022302 281 LDLSDNQNLTT 291 (299)
Q Consensus 281 L~l~~N~l~g~ 291 (299)
|++++|++.+.
T Consensus 177 L~l~~N~~~~~ 187 (263)
T 1xeu_A 177 IDLTGQKCVNE 187 (263)
T ss_dssp EEEEEEEEECC
T ss_pred EeCCCCcccCC
Confidence 99999998754
No 85
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.79 E-value=4.7e-18 Score=157.02 Aligned_cols=154 Identities=32% Similarity=0.344 Sum_probs=123.0
Q ss_pred cCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcC
Q 022302 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN 201 (299)
Q Consensus 122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~ 201 (299)
++.+++|++|++++|.+.+. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ +++ +..
T Consensus 217 ~~~l~~L~~L~l~~n~l~~~-~-----~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~ 285 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKDI-G-----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP--LAG 285 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCC-G-----GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGG--GTT
T ss_pred ccccCCCCEEECCCCCcccc-h-----hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-ccc--ccC
Confidence 45567777777777777664 2 56778888888888888876544 7788888888888888875 443 778
Q ss_pred CCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEE
Q 022302 202 LRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVL 281 (299)
Q Consensus 202 l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 281 (299)
+++|++|++++| .+.+..+ +..+++|+.|++++|++++..++..+++|+.|++++|.+++. +.+..+++|+.|
T Consensus 286 l~~L~~L~L~~n--~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 358 (466)
T 1o6v_A 286 LTALTNLELNEN--QLEDISP---ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLTNINWL 358 (466)
T ss_dssp CTTCSEEECCSS--CCSCCGG---GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred CCccCeEEcCCC--cccCchh---hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc--hhhccCCCCCEE
Confidence 888999999888 6655432 678899999999999998887788899999999999999864 468899999999
Q ss_pred ecCCCCCCCccC
Q 022302 282 DLSDNQNLTTLG 293 (299)
Q Consensus 282 ~l~~N~l~g~ip 293 (299)
++++|++++..|
T Consensus 359 ~l~~n~l~~~~~ 370 (466)
T 1o6v_A 359 SAGHNQISDLTP 370 (466)
T ss_dssp ECCSSCCCBCGG
T ss_pred eCCCCccCccch
Confidence 999999988776
No 86
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.79 E-value=7.4e-19 Score=165.89 Aligned_cols=160 Identities=29% Similarity=0.359 Sum_probs=96.1
Q ss_pred ccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhh
Q 022302 119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG 198 (299)
Q Consensus 119 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~ 198 (299)
+..|.++++|++|++++|.+.+..+. .|.++++|++|++++|.+++..|..|+.+++|++|++++|++++ ++...
T Consensus 45 ~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~ 119 (570)
T 2z63_A 45 SYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFP 119 (570)
T ss_dssp TTTTTTCSSCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC-STTCS
T ss_pred hhHhhCCCCceEEECCCCcCCccCcc----cccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccccc-CCCcc
Confidence 34556666666666666666665554 56666666666666666665555666666666666666666654 33324
Q ss_pred hcCCCCCCEEECCCCcCCCCC-ccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCC----CEEeCCCCccCccCccc
Q 022302 199 LANLRYLQVLDLSGNFNITSG-SLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNL----EALDLSYNYYIHSSLEG 271 (299)
Q Consensus 199 ~~~l~~L~~L~Ls~n~~~~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L----~~L~L~~N~l~~~~p~~ 271 (299)
++.+++|++|++++| .+.+ .+| ..+.++++|++|++++|++++.+ .+..+++| +.|++++|.+++..|..
T Consensus 120 ~~~l~~L~~L~L~~n--~l~~~~lp-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~ 196 (570)
T 2z63_A 120 IGHLKTLKELNVAHN--LIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196 (570)
T ss_dssp CTTCTTCCEEECCSS--CCCCCCCC-GGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred ccccccccEEecCCC--ccceecCh-hhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHH
Confidence 666666666666666 4443 234 55666666666666666665543 24444444 56666666666555555
Q ss_pred ccCCCCCCEEecCCCC
Q 022302 272 LANLTNLQVLDLSDNQ 287 (299)
Q Consensus 272 l~~l~~L~~L~l~~N~ 287 (299)
+... +|++|++++|.
T Consensus 197 ~~~~-~L~~L~l~~n~ 211 (570)
T 2z63_A 197 FKEI-RLHKLTLRNNF 211 (570)
T ss_dssp TTTC-EEEEEEEESCC
T ss_pred hccC-cceeEeccccc
Confidence 5444 56666666664
No 87
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=6.2e-19 Score=166.61 Aligned_cols=137 Identities=22% Similarity=0.200 Sum_probs=84.0
Q ss_pred CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL 205 (299)
Q Consensus 126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L 205 (299)
++|++|++++|.+++..+. .|..+++|++|++++|.+++..|..|..+++|++|++++|+++ .+|. . .+++|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~-~--~l~~L 123 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMP----DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISC-C--PMASL 123 (562)
T ss_dssp TTCCEEECCSSCCCCCCGG----GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECS-C--CCTTC
T ss_pred CCcCEEECCCCCccccChh----hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCc-c--ccccC
Confidence 5666677777766666655 6666667777777777666655666666667777777776666 4554 2 56667
Q ss_pred CEEECCCCcCCCCC-ccchhhhccCCCCcEEECCCCCCCCcccccCCCCC--CEEeCCCCcc--CccCcccccC
Q 022302 206 QVLDLSGNFNITSG-SLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNL--EALDLSYNYY--IHSSLEGLAN 274 (299)
Q Consensus 206 ~~L~Ls~n~~~~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L--~~L~L~~N~l--~~~~p~~l~~ 274 (299)
++|++++| .+.+ ..| ..+..+++|++|++++|++++. .+..+++| ++|++++|.+ ++..|..+..
T Consensus 124 ~~L~Ls~N--~l~~l~~p-~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~ 193 (562)
T 3a79_B 124 RHLDLSFN--DFDVLPVC-KEFGNLTKLTFLGLSAAKFRQL-DLLPVAHLHLSCILLDLVSYHIKGGETESLQI 193 (562)
T ss_dssp SEEECCSS--CCSBCCCC-GGGGGCTTCCEEEEECSBCCTT-TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEE
T ss_pred CEEECCCC--CccccCch-HhhcccCcccEEecCCCccccC-chhhhhhceeeEEEeecccccccccCcccccc
Confidence 77777766 4444 223 4566666677777766666542 23444444 6666666666 4444444433
No 88
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=3e-19 Score=168.27 Aligned_cols=186 Identities=17% Similarity=0.163 Sum_probs=127.8
Q ss_pred CCCce-EecCCCCcEEEeeeCc-cccccccCCCCc-ccccccc--cc----CCCCCccEEeCCCCCCCCcchhhhHHhhc
Q 022302 81 DWEGV-KCNATTRRVMQLSLNE-TIKFNYSSGSGS-ALLLNMS--LF----HPFEELQRLDLPGNWFTGIYENRAYDSFG 151 (299)
Q Consensus 81 ~w~gv-~C~~~~~~v~~l~l~~-~l~~~~~~~~~~-~~~~~~~--~~----~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 151 (299)
.|.|+ .|.. .+++.+++++ ++.+ ++..... ...+..+ .+ ..+++|++|++++|.+++ +| .+.
T Consensus 49 ~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~-ip-----~l~ 119 (571)
T 3cvr_A 49 AVSLLKECLI--NQFSELQLNRLNLSS-LPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLST-LP-----ELP 119 (571)
T ss_dssp HHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CC-----CCC
T ss_pred hhhhcccccc--CCccEEEeCCCCCCc-cCHhHcCCCCEEECcCCCCcccccccCCCCEEEccCCCCCC-cc-----hhh
Confidence 48888 7864 4688888888 6554 3322110 0000000 00 345677777777777776 34 222
Q ss_pred CCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCC
Q 022302 152 SLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTN 231 (299)
Q Consensus 152 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~ 231 (299)
. +|++|++++|.+++ +|. .+++|++|++++|++++ +|. .+++|++|++++| .+.+ +| . +. ++
T Consensus 120 ~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N--~L~~-lp-~-l~--~~ 181 (571)
T 3cvr_A 120 A--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNN--QLTF-LP-E-LP--ES 181 (571)
T ss_dssp T--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSS--CCSC-CC-C-CC--TT
T ss_pred c--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCC--CCCC-cc-h-hh--CC
Confidence 2 77888888888776 454 56788888888888875 553 5678888888888 6655 55 3 44 78
Q ss_pred CcEEECCCCCCCCcccccCCCCC-------CEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCCc
Q 022302 232 LKKLDLGSCGITTIQGLAKLKNL-------EALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL 296 (299)
Q Consensus 232 L~~L~Ls~n~l~~~~~l~~l~~L-------~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~~ 296 (299)
|++|++++|+++.++.+.. +| +.|+|++|.++ .+|+.+..+++|+.|++++|++++.+|..+
T Consensus 182 L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 182 LEALDVSTNLLESLPAVPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp CCEEECCSSCCSSCCCCC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred CCEEECcCCCCCchhhHHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 9999999998887766333 67 99999999998 688888889999999999999998877643
No 89
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=1.4e-18 Score=142.27 Aligned_cols=151 Identities=21% Similarity=0.231 Sum_probs=125.7
Q ss_pred CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc
Q 022302 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (299)
Q Consensus 92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 170 (299)
.+++.+++++ .+.. ...+..+++|++|++++|.++.. . .+..+++|++|++++|.+++..
T Consensus 44 ~~L~~L~l~~n~i~~-------------l~~l~~l~~L~~L~l~~n~~~~~--~----~l~~l~~L~~L~l~~n~l~~~~ 104 (197)
T 4ezg_A 44 NSLTYITLANINVTD-------------LTGIEYAHNIKDLTINNIHATNY--N----PISGLSNLERLRIMGKDVTSDK 104 (197)
T ss_dssp HTCCEEEEESSCCSC-------------CTTGGGCTTCSEEEEESCCCSCC--G----GGTTCTTCCEEEEECTTCBGGG
T ss_pred CCccEEeccCCCccC-------------hHHHhcCCCCCEEEccCCCCCcc--h----hhhcCCCCCEEEeECCccCccc
Confidence 3577788877 4432 12477889999999999977654 2 6889999999999999999878
Q ss_pred hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccC
Q 022302 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAK 250 (299)
Q Consensus 171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~ 250 (299)
+..++.+++|++|++++|++++..+. .+..+++|++|++++| ...+.++ .+..+++|++|++++|.+++.+.+..
T Consensus 105 ~~~l~~l~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n--~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~~l~~ 179 (197)
T 4ezg_A 105 IPNLSGLTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYN--GAITDIM--PLKTLPELKSLNIQFDGVHDYRGIED 179 (197)
T ss_dssp SCCCTTCTTCCEEECCSSBCBGGGHH-HHTTCSSCCEEECCSC--TBCCCCG--GGGGCSSCCEEECTTBCCCCCTTGGG
T ss_pred ChhhcCCCCCCEEEecCCccCcHhHH-HHhhCCCCCEEEccCC--CCccccH--hhcCCCCCCEEECCCCCCcChHHhcc
Confidence 88899999999999999999976665 7999999999999999 6444555 58899999999999999999888999
Q ss_pred CCCCCEEeCCCCccCc
Q 022302 251 LKNLEALDLSYNYYIH 266 (299)
Q Consensus 251 l~~L~~L~L~~N~l~~ 266 (299)
+++|+.|++++|++.+
T Consensus 180 l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 180 FPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSSCCEEEECBC----
T ss_pred CCCCCEEEeeCcccCC
Confidence 9999999999999874
No 90
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.77 E-value=1e-18 Score=166.49 Aligned_cols=178 Identities=28% Similarity=0.300 Sum_probs=143.5
Q ss_pred CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc
Q 022302 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI 170 (299)
Q Consensus 92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 170 (299)
..++.|+|++ .+++ +++..|.++++|++|+|++|.++++.+. +|.++++|++|+|++|++++..
T Consensus 52 ~~~~~LdLs~N~i~~-----------l~~~~f~~l~~L~~L~Ls~N~i~~i~~~----~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRH-----------LGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp TTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEEC
T ss_pred cCCCEEEeeCCCCCC-----------CCHHHHhCCCCCCEEECCCCcCCCcChh----HhcCCCCCCEEEccCCcCCCCC
Confidence 3577888877 5544 5567899999999999999999998887 8999999999999999999877
Q ss_pred hHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCC-ccchhhhccCCCCcEEECCCCCCCCccc--
Q 022302 171 LPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSG-SLTRLGLANLTNLKKLDLGSCGITTIQG-- 247 (299)
Q Consensus 171 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-- 247 (299)
+..|.++++|++|++++|++++ +++..|+.+++|++|++++| .+.+ ..| ..+..+++|++|++++|++++...
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N--~l~~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHN--LIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSS--CCCCCCCC-GGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred HHHhcCCCCCCEEECCCCcCCC-CChhhhhcCcccCeeccccC--ccccCCCc-hhhccchhhhhhcccCcccccccccc
Confidence 7889999999999999999986 66557999999999999999 6654 345 678899999999999999987642
Q ss_pred ccCCC----CCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCC
Q 022302 248 LAKLK----NLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNL 289 (299)
Q Consensus 248 l~~l~----~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 289 (299)
+..++ ....++++.|.++...+. ......++.+++.+|...
T Consensus 193 l~~L~~l~~~~~~~~ls~n~l~~i~~~-~~~~~~~~~l~l~~n~~~ 237 (635)
T 4g8a_A 193 LRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLHKLTLRNNFDS 237 (635)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTT-TTTTCEEEEEEEESCCSS
T ss_pred ccchhhhhhhhhhhhcccCcccccCcc-cccchhhhhhhhhccccc
Confidence 33332 345788999998854444 334445677777777554
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=4.1e-19 Score=149.72 Aligned_cols=160 Identities=17% Similarity=0.144 Sum_probs=135.6
Q ss_pred CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCC-CCccchHhhccCCCCcEEeCCC-CcCCCcchhhhhcCCC
Q 022302 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNF-FNDSILPYLNTLTSLTTLILSD-NSIEGSRTKQGLANLR 203 (299)
Q Consensus 126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~~l~ 203 (299)
+++++|++++|.+++..+. .+..+++|++|++++|. ++...+..+..+++|++|++++ |++++ +++..|..++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~----~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~-i~~~~f~~l~ 105 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSH----AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY-IDPDALKELP 105 (239)
T ss_dssp TTCCEEEEESCCCSEECTT----TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE-ECTTSEECCT
T ss_pred CcccEEEEeCCcceEECHH----HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE-cCHHHhCCCC
Confidence 3799999999999998876 78999999999999997 8876667899999999999998 99984 6655789999
Q ss_pred CCCEEECCCCcCCCCCccchhhhccCCCCc---EEECCCC-CCCCccc--ccCCCCCC-EEeCCCCccCccCcccccCCC
Q 022302 204 YLQVLDLSGNFNITSGSLTRLGLANLTNLK---KLDLGSC-GITTIQG--LAKLKNLE-ALDLSYNYYIHSSLEGLANLT 276 (299)
Q Consensus 204 ~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~~--l~~l~~L~-~L~L~~N~l~~~~p~~l~~l~ 276 (299)
+|++|++++| .+.+ +| . +..+++|+ +|++++| ++++.+. +..+++|+ +|++++|.++ .+|......+
T Consensus 106 ~L~~L~l~~n--~l~~-lp-~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~ 179 (239)
T 2xwt_C 106 LLKFLGIFNT--GLKM-FP-D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGT 179 (239)
T ss_dssp TCCEEEEEEE--CCCS-CC-C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTC
T ss_pred CCCEEeCCCC--CCcc-cc-c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCC
Confidence 9999999999 6665 56 3 78888888 9999999 8988764 88899999 9999999999 5665544448
Q ss_pred CCCEEecCCCC-CCCccCCCc
Q 022302 277 NLQVLDLSDNQ-NLTTLGKPL 296 (299)
Q Consensus 277 ~L~~L~l~~N~-l~g~ip~~~ 296 (299)
+|++|++++|+ +.+..|..+
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~ 200 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAF 200 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTT
T ss_pred CCCEEEcCCCCCcccCCHHHh
Confidence 99999999996 875334433
No 92
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.77 E-value=2.8e-17 Score=145.82 Aligned_cols=154 Identities=29% Similarity=0.297 Sum_probs=84.7
Q ss_pred cCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchh-----
Q 022302 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK----- 196 (299)
Q Consensus 122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~----- 196 (299)
+..+++|++|++++|.++.. + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.....++.
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~-~-----~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~ 155 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDI-S-----ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMT 155 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC-G-----GGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCT
T ss_pred hhcCCcCCEEEccCCcccCc-h-----HHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccchhhCC
Confidence 55566666666666666553 2 45566666666666666554322 45555555555555543322221
Q ss_pred ---------------hhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCC
Q 022302 197 ---------------QGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSY 261 (299)
Q Consensus 197 ---------------~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~ 261 (299)
..+..+++|++|++++| .+.+. + .+..+++|++|++++|.+++...+..+++|++|++++
T Consensus 156 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n--~l~~~-~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~ 230 (347)
T 4fmz_A 156 GLNYLTVTESKVKDVTPIANLTDLYSLSLNYN--QIEDI-S--PLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGN 230 (347)
T ss_dssp TCCEEECCSSCCCCCGGGGGCTTCSEEECTTS--CCCCC-G--GGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCS
T ss_pred CCcEEEecCCCcCCchhhccCCCCCEEEccCC--ccccc-c--cccCCCccceeecccCCCCCCchhhcCCcCCEEEccC
Confidence 01344444444444444 33221 1 1445555555555555555554566667777777777
Q ss_pred CccCccCcccccCCCCCCEEecCCCCCCC
Q 022302 262 NYYIHSSLEGLANLTNLQVLDLSDNQNLT 290 (299)
Q Consensus 262 N~l~~~~p~~l~~l~~L~~L~l~~N~l~g 290 (299)
|.+++..+ +..+++|++|++++|++.+
T Consensus 231 n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 231 NKITDLSP--LANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred CccCCCcc--hhcCCCCCEEECCCCccCC
Confidence 77764333 6677777777777777654
No 93
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.76 E-value=1.8e-17 Score=152.76 Aligned_cols=149 Identities=23% Similarity=0.173 Sum_probs=85.8
Q ss_pred cCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCC---------
Q 022302 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEG--------- 192 (299)
Q Consensus 122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--------- 192 (299)
++.+++|++|++++|.+++. .+..+++|++|++++|++++. | ++.+++|++|++++|++++
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~-------~~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L 150 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNL-------DVTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEIDVSHNTQL 150 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCC-------CCTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCCCCTTCTTC
T ss_pred cccCCCCCEEECcCCCCcee-------ecCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccceeccccCCcC
Confidence 44455555555555555543 134455555555555555442 2 4445555555555555443
Q ss_pred ------------cchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCC
Q 022302 193 ------------SRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLS 260 (299)
Q Consensus 193 ------------~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~ 260 (299)
.+ .+..+++|++|++++| .+.+ ++ +..+++|+.|++++|++++. ++..+++|+.|+++
T Consensus 151 ~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n--~l~~-l~---l~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls 220 (457)
T 3bz5_A 151 TELDCHLNKKITKL---DVTPQTQLTTLDCSFN--KITE-LD---VSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCS 220 (457)
T ss_dssp CEEECTTCSCCCCC---CCTTCTTCCEEECCSS--CCCC-CC---CTTCTTCCEEECCSSCCSCC-CCTTCTTCSEEECC
T ss_pred CEEECCCCCccccc---ccccCCcCCEEECCCC--ccce-ec---cccCCCCCEEECcCCcCCee-ccccCCCCCEEECc
Confidence 22 1344555555555555 3333 22 45566666666666666665 46677778888888
Q ss_pred CCccCccCcccccCCCCCCEEecCCCCCCCccC
Q 022302 261 YNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLG 293 (299)
Q Consensus 261 ~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip 293 (299)
+|++++ +| +..+++|++|++++|++++..+
T Consensus 221 ~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 221 SNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp SSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC
T ss_pred CCcccc-cC--ccccCCCCEEEeeCCcCCCcCH
Confidence 888876 55 7778888888888888876443
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=2e-18 Score=152.46 Aligned_cols=161 Identities=24% Similarity=0.290 Sum_probs=94.9
Q ss_pred ccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCC-CCCcc-chHhhccCCCCcEEeCCCC-cCCCcchhh
Q 022302 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDN-FFNDS-ILPYLNTLTSLTTLILSDN-SIEGSRTKQ 197 (299)
Q Consensus 121 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~-~p~~l~~l~~L~~L~L~~n-~l~~~~p~~ 197 (299)
.+..+++|++|++++|.+++..+. .+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++...+.
T Consensus 113 ~~~~~~~L~~L~L~~~~l~~~~~~----~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 113 ILSQCSKLQNLSLEGLRLSDPIVN----TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp HHTTBCCCSEEECTTCBCCHHHHH----HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred HHhhCCCCCEEeCcCcccCHHHHH----HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence 455666777777777766655554 5666677777777776 55542 4555666677777777776 665431222
Q ss_pred hhcCCC-CCCEEECCCCcCCCC-CccchhhhccCCCCcEEECCCCC-CCC--cccccCCCCCCEEeCCCCc-cCccCccc
Q 022302 198 GLANLR-YLQVLDLSGNFNITS-GSLTRLGLANLTNLKKLDLGSCG-ITT--IQGLAKLKNLEALDLSYNY-YIHSSLEG 271 (299)
Q Consensus 198 ~~~~l~-~L~~L~Ls~n~~~~~-~~~~~~~~~~l~~L~~L~Ls~n~-l~~--~~~l~~l~~L~~L~L~~N~-l~~~~p~~ 271 (299)
.+..++ +|++|++++|...+. +.++ ..+..+++|++|++++|. +++ ...+..+++|++|++++|. ++......
T Consensus 189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 267 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRKNLQKSDLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 267 (336)
T ss_dssp HHHHSCTTCCEEECCSCGGGSCHHHHH-HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred HHHhcccCCCEEEeCCCcccCCHHHHH-HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence 456666 777777776622222 2333 455666777777777776 443 2235666777777777663 32222234
Q ss_pred ccCCCCCCEEecCCC
Q 022302 272 LANLTNLQVLDLSDN 286 (299)
Q Consensus 272 l~~l~~L~~L~l~~N 286 (299)
+.++++|++|++++|
T Consensus 268 l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 268 LGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGCTTCCEEECTTS
T ss_pred HhcCCCCCEEeccCc
Confidence 556666666666665
No 95
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.76 E-value=2.4e-17 Score=152.04 Aligned_cols=153 Identities=26% Similarity=0.210 Sum_probs=113.7
Q ss_pred cCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcC
Q 022302 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN 201 (299)
Q Consensus 122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~ 201 (299)
++++++|++|++++|.+++. .+..+++|++|++++|...+.+ .+..+++|++|++++|++++ +| +..
T Consensus 123 ~~~l~~L~~L~l~~N~l~~l-------~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~---l~~ 189 (457)
T 3bz5_A 123 VSQNPLLTYLNCARNTLTEI-------DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD---VSQ 189 (457)
T ss_dssp CTTCTTCCEEECTTSCCSCC-------CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC---CTT
T ss_pred CCCCCcCCEEECCCCcccee-------ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec---ccc
Confidence 34444555555555555443 2445556666666666443333 36678899999999999986 44 788
Q ss_pred CCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCC-----
Q 022302 202 LRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLT----- 276 (299)
Q Consensus 202 l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~----- 276 (299)
+++|+.|++++| .+.+. .+..+++|++|++++|++++.+ +..+++|+.|++++|++++..+..+.++.
T Consensus 190 l~~L~~L~l~~N--~l~~~----~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 190 NKLLNRLNCDTN--NITKL----DLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCI 262 (457)
T ss_dssp CTTCCEEECCSS--CCSCC----CCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECT
T ss_pred CCCCCEEECcCC--cCCee----ccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEecc
Confidence 999999999999 66653 3788999999999999999975 89999999999999999987655555554
Q ss_pred --CCCEEecCCCCCCCccCC
Q 022302 277 --NLQVLDLSDNQNLTTLGK 294 (299)
Q Consensus 277 --~L~~L~l~~N~l~g~ip~ 294 (299)
+|+.|++++|++.|.+|.
T Consensus 263 ~n~L~~L~l~~n~~~~~~~~ 282 (457)
T 3bz5_A 263 QTDLLEIDLTHNTQLIYFQA 282 (457)
T ss_dssp TCCCSCCCCTTCTTCCEEEC
T ss_pred CCCCCEEECCCCccCCcccc
Confidence 667788888888888774
No 96
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=2.3e-17 Score=137.43 Aligned_cols=152 Identities=20% Similarity=0.171 Sum_probs=109.0
Q ss_pred EEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccch-HhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEE
Q 022302 130 RLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL-PYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVL 208 (299)
Q Consensus 130 ~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L 208 (299)
++++++|.++.+.. .+ .+.+++|++++|.+++..+ ..+..+++|++|++++|++++ +++..|..+++|++|
T Consensus 15 ~l~~s~n~l~~iP~-----~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L 86 (220)
T 2v70_A 15 TVDCSNQKLNKIPE-----HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEI 86 (220)
T ss_dssp EEECCSSCCSSCCS-----CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEE
T ss_pred EeEeCCCCcccCcc-----CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE-ECHHHhCCCCCCCEE
Confidence 56666666665422 22 2356788888888876544 346778888888888888774 444467788888888
Q ss_pred ECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCC
Q 022302 209 DLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286 (299)
Q Consensus 209 ~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N 286 (299)
++++| .+.+..+ ..+..+++|++|++++|++++.+ .+..+++|+.|+|++|++++..|..+..+++|++|++++|
T Consensus 87 ~Ls~N--~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 87 LLTSN--RLENVQH-KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp ECCSS--CCCCCCG-GGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred ECCCC--ccCccCH-hHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 88888 6655544 56777888888888888887764 3777788888888888888777778888888888888888
Q ss_pred CCCCcc
Q 022302 287 QNLTTL 292 (299)
Q Consensus 287 ~l~g~i 292 (299)
++.+..
T Consensus 164 ~l~c~c 169 (220)
T 2v70_A 164 PFNCNC 169 (220)
T ss_dssp CEECSG
T ss_pred CCcCCC
Confidence 876543
No 97
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=2.3e-18 Score=152.11 Aligned_cols=160 Identities=21% Similarity=0.205 Sum_probs=132.9
Q ss_pred cCCCCCccEEeCCCCCCCCc-chhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCC-cCCCcchhhhh
Q 022302 122 FHPFEELQRLDLPGNWFTGI-YENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDN-SIEGSRTKQGL 199 (299)
Q Consensus 122 ~~~l~~L~~L~L~~n~l~~~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~~~ 199 (299)
+.++++|++|++++|.+++. .+. .+..+++|++|++++|.+++..+..++.+++|++|++++| .+++...+..+
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~ 164 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHG----ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 164 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHH----HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred hccCCCCCEEEccCCCcCHHHHHH----HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH
Confidence 55789999999999998765 554 7889999999999999999888999999999999999999 67753223368
Q ss_pred cCCCCCCEEECCCC-cCCCCCccchhhhccCC-CCcEEECCCC--CCCC--cc-cccCCCCCCEEeCCCCc-cCccCccc
Q 022302 200 ANLRYLQVLDLSGN-FNITSGSLTRLGLANLT-NLKKLDLGSC--GITT--IQ-GLAKLKNLEALDLSYNY-YIHSSLEG 271 (299)
Q Consensus 200 ~~l~~L~~L~Ls~n-~~~~~~~~~~~~~~~l~-~L~~L~Ls~n--~l~~--~~-~l~~l~~L~~L~L~~N~-l~~~~p~~ 271 (299)
..+++|++|++++| .+.. ..++ ..+..++ +|++|++++| .+++ .+ .+..+++|++|++++|. +++..+..
T Consensus 165 ~~~~~L~~L~l~~~~~l~~-~~~~-~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 242 (336)
T 2ast_B 165 SSCSRLDELNLSWCFDFTE-KHVQ-VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 242 (336)
T ss_dssp HHCTTCCEEECCCCTTCCH-HHHH-HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred hcCCCCCEEcCCCCCCcCh-HHHH-HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH
Confidence 88999999999998 3221 1134 5678899 9999999999 4542 22 36789999999999999 78788889
Q ss_pred ccCCCCCCEEecCCCC
Q 022302 272 LANLTNLQVLDLSDNQ 287 (299)
Q Consensus 272 l~~l~~L~~L~l~~N~ 287 (299)
+..+++|++|++++|.
T Consensus 243 l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 243 FFQLNYLQHLSLSRCY 258 (336)
T ss_dssp GGGCTTCCEEECTTCT
T ss_pred HhCCCCCCEeeCCCCC
Confidence 9999999999999995
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=4e-19 Score=160.23 Aligned_cols=192 Identities=21% Similarity=0.256 Sum_probs=139.4
Q ss_pred CcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCC---------CCCCEEEC
Q 022302 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSL---------KQLKMLNL 161 (299)
Q Consensus 92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l---------~~L~~L~L 161 (299)
.+++.+++++ .+.+. .....+..+.++++|++|++++|.++...+..+...+..+ ++|++|++
T Consensus 94 ~~L~~L~Ls~n~l~~~-------~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPT-------AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp TTCCEEECCSCCCCTT-------THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred CcccEEECCCCcCCHH-------HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence 4567777776 43320 0001233567788888888888888765554444445555 88999999
Q ss_pred CCCCCC-ccch---HhhccCCCCcEEeCCCCcCCCc----chhhhhcCCCCCCEEECCCCcCCCC----CccchhhhccC
Q 022302 162 GDNFFN-DSIL---PYLNTLTSLTTLILSDNSIEGS----RTKQGLANLRYLQVLDLSGNFNITS----GSLTRLGLANL 229 (299)
Q Consensus 162 s~n~l~-~~~p---~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~~l~~L~~L~Ls~n~~~~~----~~~~~~~~~~l 229 (299)
++|+++ +.++ ..+..+++|++|++++|+++.. +.+..+..+++|++|++++| .+. +.++ ..+..+
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n--~l~~~g~~~l~-~~l~~~ 243 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN--TFTHLGSSALA-IALKSW 243 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS--CCHHHHHHHHH-HHGGGC
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC--CCCcHHHHHHH-HHHccC
Confidence 999887 3444 4667788999999999988732 12225778899999999999 654 4455 577888
Q ss_pred CCCcEEECCCCCCCCcc------cc--cCCCCCCEEeCCCCccCc----cCcccc-cCCCCCCEEecCCCCCCCccC
Q 022302 230 TNLKKLDLGSCGITTIQ------GL--AKLKNLEALDLSYNYYIH----SSLEGL-ANLTNLQVLDLSDNQNLTTLG 293 (299)
Q Consensus 230 ~~L~~L~Ls~n~l~~~~------~l--~~l~~L~~L~L~~N~l~~----~~p~~l-~~l~~L~~L~l~~N~l~g~ip 293 (299)
++|++|++++|.+++.. .+ +.+++|+.|+|++|.+++ .+|..+ .++++|++|++++|++++..|
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 99999999999988651 24 448899999999999997 478777 668999999999999987653
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=2.5e-18 Score=153.19 Aligned_cols=198 Identities=20% Similarity=0.240 Sum_probs=144.9
Q ss_pred CCCCCceEecCC---------CCcEEEeeeCc-cccccccCCCCccccccccccCCCCCccEEeCCCCCCCCcchhhhHH
Q 022302 79 CDDWEGVKCNAT---------TRRVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHPFEELQRLDLPGNWFTGIYENRAYD 148 (299)
Q Consensus 79 c~~w~gv~C~~~---------~~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 148 (299)
| .|..|.|... ...++.|+|++ +++. ++...|+++++|++|+|++|.+.+.++. .
T Consensus 9 C-~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~-----------i~~~~f~~l~~L~~L~Ls~N~i~~~i~~---~ 73 (350)
T 4ay9_X 9 C-SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRV-----------IQKGAFSGFGDLEKIEISQNDVLEVIEA---D 73 (350)
T ss_dssp E-ETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSE-----------ECTTSSTTCTTCCEEEEECCTTCCEECT---T
T ss_pred e-eCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCC-----------cCHHHHcCCCCCCEEECcCCCCCCccCh---h
Confidence 5 8999999742 12456677766 4433 5566789999999999999998776653 1
Q ss_pred hhcCCCCCCE-EECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhc
Q 022302 149 SFGSLKQLKM-LNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLA 227 (299)
Q Consensus 149 ~l~~l~~L~~-L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~ 227 (299)
.|.+++++++ +.++.|+++...|..+..+++|++|++++|++.. ++...+....++..+++.++ .....++...+.
T Consensus 74 ~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~--~~i~~l~~~~f~ 150 (350)
T 4ay9_X 74 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDN--INIHTIERNSFV 150 (350)
T ss_dssp SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESC--TTCCEECTTSST
T ss_pred HhhcchhhhhhhcccCCcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhccc--cccccccccchh
Confidence 6788888775 5667789988778889999999999999999985 44445666677888888765 444455545555
Q ss_pred cCC-CCcEEECCCCCCCCccc-ccCCCCCCEEeCCC-CccCccCcccccCCCCCCEEecCCCCCCCccCCC
Q 022302 228 NLT-NLKKLDLGSCGITTIQG-LAKLKNLEALDLSY-NYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKP 295 (299)
Q Consensus 228 ~l~-~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~ 295 (299)
.+. .++.|++++|+++.++. .....+|+++++.+ |.++...++.|..+++|++|++++|+++. +|..
T Consensus 151 ~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~ 220 (350)
T 4ay9_X 151 GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPSY 220 (350)
T ss_dssp TSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCSS
T ss_pred hcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cChh
Confidence 554 68889999999887654 44567788888875 55653333567888899999999998874 5553
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=1.4e-17 Score=158.34 Aligned_cols=153 Identities=30% Similarity=0.337 Sum_probs=135.6
Q ss_pred cCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcC
Q 022302 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLAN 201 (299)
Q Consensus 122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~ 201 (299)
+..+++|+.|++++|.+... + .+..+++|+.|+|++|.+++..+ +..+++|++|+|++|.+.+ ++ .+..
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l-~-----~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~--~l~~ 107 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV-Q-----GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS--SLKD 107 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC-T-----TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT--TSTT
T ss_pred hhcCCCCCEEECcCCCCCCC-h-----HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch--hhcc
Confidence 45678899999999999876 3 57889999999999999997655 8999999999999999985 44 5899
Q ss_pred CCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEE
Q 022302 202 LRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVL 281 (299)
Q Consensus 202 l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 281 (299)
+++|++|+|++| .+.+. ..+..+++|+.|+|++|.+++...+..+++|+.|+|++|.+++..| +..+++|+.|
T Consensus 108 l~~L~~L~Ls~N--~l~~l---~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 180 (605)
T 1m9s_A 108 LKKLKSLSLEHN--GISDI---NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 180 (605)
T ss_dssp CTTCCEEECTTS--CCCCC---GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred CCCCCEEEecCC--CCCCC---ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh--hccCCCCCEE
Confidence 999999999999 66553 3588999999999999999999889999999999999999997666 9999999999
Q ss_pred ecCCCCCCCccC
Q 022302 282 DLSDNQNLTTLG 293 (299)
Q Consensus 282 ~l~~N~l~g~ip 293 (299)
+|++|++.+ +|
T Consensus 181 ~Ls~N~i~~-l~ 191 (605)
T 1m9s_A 181 YLSKNHISD-LR 191 (605)
T ss_dssp ECCSSCCCB-CG
T ss_pred ECcCCCCCC-Ch
Confidence 999999986 44
No 101
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.75 E-value=5.9e-18 Score=134.81 Aligned_cols=137 Identities=25% Similarity=0.230 Sum_probs=107.6
Q ss_pred CCCCCCEEECCCCCCC-ccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCC
Q 022302 152 SLKQLKMLNLGDNFFN-DSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLT 230 (299)
Q Consensus 152 ~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~ 230 (299)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++| .+.+.+| ..+..++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N--~l~~~~~-~~~~~l~ 95 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSEN--RIFGGLD-MLAEKLP 95 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESC--CCCSCCC-HHHHHCT
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCC--cCchHHH-HHHhhCC
Confidence 4467888888888876 56777777788888888888888753 36788888888888888 6666556 6667788
Q ss_pred CCcEEECCCCCCCCcc---cccCCCCCCEEeCCCCccCccCc---ccccCCCCCCEEecCCCCCCCccCCC
Q 022302 231 NLKKLDLGSCGITTIQ---GLAKLKNLEALDLSYNYYIHSSL---EGLANLTNLQVLDLSDNQNLTTLGKP 295 (299)
Q Consensus 231 ~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~l~~N~l~g~ip~~ 295 (299)
+|++|++++|.+++.+ .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+. ++|++
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 8888888888888753 47788899999999999986544 47889999999999999886 46654
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=1.4e-17 Score=149.05 Aligned_cols=153 Identities=24% Similarity=0.262 Sum_probs=125.9
Q ss_pred cEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhc-cCCCCcEEeCCCCcCCCcchhhhhcCCCCCCE
Q 022302 129 QRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN-TLTSLTTLILSDNSIEGSRTKQGLANLRYLQV 207 (299)
Q Consensus 129 ~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~ 207 (299)
+.++++++.++.... .+ .+.++.|+|++|.+++..+..+. .+++|++|+|++|++++ +++..|..+++|++
T Consensus 21 ~~l~c~~~~l~~iP~-----~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~ 92 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ-----SL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRY 92 (361)
T ss_dssp TEEECCSSCCSSCCS-----SC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE-ECTTTTTTCTTCCE
T ss_pred CEEEeCCCCcCccCc-----cC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc-cChhhccCCCCCCE
Confidence 457777777776533 22 34689999999999987777787 89999999999999985 55557999999999
Q ss_pred EECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccc---cCCCCCCEEe
Q 022302 208 LDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGL---ANLTNLQVLD 282 (299)
Q Consensus 208 L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l---~~l~~L~~L~ 282 (299)
|+|++| .+.+..+ ..+..+++|++|+|++|+++... .+..+++|+.|+|++|.+++..+..+ ..+++|+.|+
T Consensus 93 L~Ls~N--~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 93 LDLSSN--HLHTLDE-FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp EECCSS--CCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEE
T ss_pred EECCCC--cCCcCCH-HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEE
Confidence 999999 6665444 67899999999999999999874 48899999999999999996444445 5799999999
Q ss_pred cCCCCCCCccC
Q 022302 283 LSDNQNLTTLG 293 (299)
Q Consensus 283 l~~N~l~g~ip 293 (299)
|++|+|.+ +|
T Consensus 170 L~~N~l~~-l~ 179 (361)
T 2xot_A 170 LSSNKLKK-LP 179 (361)
T ss_dssp CCSSCCCC-CC
T ss_pred CCCCCCCc-cC
Confidence 99999985 44
No 103
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=1.9e-17 Score=134.97 Aligned_cols=130 Identities=22% Similarity=0.234 Sum_probs=88.9
Q ss_pred cEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchH-hhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCE
Q 022302 129 QRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILP-YLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQV 207 (299)
Q Consensus 129 ~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~ 207 (299)
+++++++|.++.+.. .+. .+|++|++++|.+++..+. .++.+++|++|++++|++++..|. .|..+++|++
T Consensus 11 ~~l~~s~~~l~~ip~-----~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~ 82 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-----DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN-AFEGASHIQE 82 (192)
T ss_dssp TEEECTTSCCSSCCS-----CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT-TTTTCTTCCE
T ss_pred CEEEcCCCCcCcCcc-----CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh-HcCCcccCCE
Confidence 678888887755432 222 3778888888887765543 377778888888888888764443 6777778888
Q ss_pred EECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCc
Q 022302 208 LDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSL 269 (299)
Q Consensus 208 L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p 269 (299)
|++++| .+.+..+ ..+..+++|++|++++|++++.. .+..+++|++|++++|.+++..+
T Consensus 83 L~Ls~N--~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 83 LQLGEN--KIKEISN-KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp EECCSC--CCCEECS-SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred EECCCC--cCCccCH-HHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 888877 6655544 55667777777777777776653 26666777777777777765544
No 104
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=4.1e-18 Score=153.62 Aligned_cols=166 Identities=24% Similarity=0.258 Sum_probs=90.1
Q ss_pred CCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhc----cC---------CCCcEEeCCCCc
Q 022302 123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN----TL---------TSLTTLILSDNS 189 (299)
Q Consensus 123 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~----~l---------~~L~~L~L~~n~ 189 (299)
..+++|++|++++|.+.+.....+...+..+++|++|++++|.+++..+..+. .+ ++|++|++++|+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 45566666666666665532222222555566666666666666433333222 22 566666666666
Q ss_pred CC-Ccchh--hhhcCCCCCCEEECCCCcCCCC--Cc--cchhhhccCCCCcEEECCCCCCCC-----cc-cccCCCCCCE
Q 022302 190 IE-GSRTK--QGLANLRYLQVLDLSGNFNITS--GS--LTRLGLANLTNLKKLDLGSCGITT-----IQ-GLAKLKNLEA 256 (299)
Q Consensus 190 l~-~~~p~--~~~~~l~~L~~L~Ls~n~~~~~--~~--~~~~~~~~l~~L~~L~Ls~n~l~~-----~~-~l~~l~~L~~ 256 (299)
++ +.++. ..+..+++|++|++++| .+. |. +.+..+..+++|++|++++|.++. .+ .+..+++|++
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n--~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQN--GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSS--CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCC--CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence 65 22221 23455666666666666 333 20 111245566666666666666642 11 2556666777
Q ss_pred EeCCCCccCcc----Cccccc--CCCCCCEEecCCCCCCC
Q 022302 257 LDLSYNYYIHS----SLEGLA--NLTNLQVLDLSDNQNLT 290 (299)
Q Consensus 257 L~L~~N~l~~~----~p~~l~--~l~~L~~L~l~~N~l~g 290 (299)
|+|++|.+++. ++..+. .+++|++|++++|++++
T Consensus 249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 77777766654 445552 36667777777776665
No 105
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.72 E-value=2.2e-17 Score=128.82 Aligned_cols=127 Identities=27% Similarity=0.269 Sum_probs=81.2
Q ss_pred CCCCCEEECCCCCCC-ccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCC
Q 022302 153 LKQLKMLNLGDNFFN-DSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTN 231 (299)
Q Consensus 153 l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~ 231 (299)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++| .+.+.+| ..+..+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n--~i~~~~~-~~~~~l~~ 89 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDN--RVSGGLE-VLAEKCPN 89 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSS--CCCSCTH-HHHHHCTT
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCC--cccchHH-HHhhhCCC
Confidence 345666666666665 45555556666666666666666543 24666666666666666 5555444 45555667
Q ss_pred CcEEECCCCCCCCc---ccccCCCCCCEEeCCCCccCccCc---ccccCCCCCCEEecCC
Q 022302 232 LKKLDLGSCGITTI---QGLAKLKNLEALDLSYNYYIHSSL---EGLANLTNLQVLDLSD 285 (299)
Q Consensus 232 L~~L~Ls~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~l~~ 285 (299)
|++|++++|.+++. ..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 77777777776664 236677777777777777775544 4677788888887753
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.72 E-value=7.7e-18 Score=150.64 Aligned_cols=187 Identities=21% Similarity=0.206 Sum_probs=139.6
Q ss_pred CcEEEeeeCc-cccccccCCCCccccccc----cccCCCC-CccEEeCCCCCCCCcchhhhHHhhcCC-CCCCEEECCCC
Q 022302 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNM----SLFHPFE-ELQRLDLPGNWFTGIYENRAYDSFGSL-KQLKMLNLGDN 164 (299)
Q Consensus 92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n 164 (299)
..++.+++++ .+.+ ... ..+.+++ +|++|++++|.+++..+..+...+... ++|++|++++|
T Consensus 22 ~~L~~L~Ls~n~l~~-----------~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 90 (362)
T 3goz_A 22 HGVTSLDLSLNNLYS-----------ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN 90 (362)
T ss_dssp TTCCEEECTTSCGGG-----------SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred CCceEEEccCCCCCh-----------HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC
Confidence 4588999988 5544 122 4577788 899999999999988777555555554 99999999999
Q ss_pred CCCccchHhhcc----C-CCCcEEeCCCCcCCCcchhh---hhcC-CCCCCEEECCCCcCCCCC----ccchhhhccCC-
Q 022302 165 FFNDSILPYLNT----L-TSLTTLILSDNSIEGSRTKQ---GLAN-LRYLQVLDLSGNFNITSG----SLTRLGLANLT- 230 (299)
Q Consensus 165 ~l~~~~p~~l~~----l-~~L~~L~L~~n~l~~~~p~~---~~~~-l~~L~~L~Ls~n~~~~~~----~~~~~~~~~l~- 230 (299)
.+++..+..+.. + ++|++|++++|++++..+.. .+.. .++|++|++++| .+.+ .++ ..+...+
T Consensus 91 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~l~~~~~~~l~-~~l~~~~~ 167 (362)
T 3goz_A 91 FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN--DLGIKSSDELI-QILAAIPA 167 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS--CGGGSCHHHHH-HHHHTSCT
T ss_pred cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC--cCCHHHHHHHH-HHHhcCCc
Confidence 998877775544 4 89999999999998644331 2334 369999999999 5543 222 3445555
Q ss_pred CCcEEECCCCCCCCcc------cccCC-CCCCEEeCCCCccCcc----CcccccC-CCCCCEEecCCCCCCCcc
Q 022302 231 NLKKLDLGSCGITTIQ------GLAKL-KNLEALDLSYNYYIHS----SLEGLAN-LTNLQVLDLSDNQNLTTL 292 (299)
Q Consensus 231 ~L~~L~Ls~n~l~~~~------~l~~l-~~L~~L~L~~N~l~~~----~p~~l~~-l~~L~~L~l~~N~l~g~i 292 (299)
+|++|++++|++++.. .+..+ ++|++|+|++|.+++. +++.+.. .++|++|++++|++.+.-
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 9999999999997654 24455 5999999999999864 4555555 469999999999997643
No 107
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=2.8e-17 Score=130.85 Aligned_cols=137 Identities=27% Similarity=0.215 Sum_probs=114.2
Q ss_pred CCCCccEEeCCCCCCC-CcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCC
Q 022302 124 PFEELQRLDLPGNWFT-GIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANL 202 (299)
Q Consensus 124 ~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l 202 (299)
..++|++|++++|.++ +.+|. .+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|. .+..+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~----~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l 94 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEG----LTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM-LAEKL 94 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSS----CCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-HHHHC
T ss_pred CcccCCEEECCCCCCChhhHHH----HHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-HHhhC
Confidence 3478999999999998 56665 678899999999999999875 7788999999999999999976664 67779
Q ss_pred CCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc-----ccCCCCCCEEeCCCCccCccCcc
Q 022302 203 RYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG-----LAKLKNLEALDLSYNYYIHSSLE 270 (299)
Q Consensus 203 ~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----l~~l~~L~~L~L~~N~l~~~~p~ 270 (299)
++|++|++++| .+.+......+..+++|++|++++|.+++.+. +..+++|++|++++|.+. .+|+
T Consensus 95 ~~L~~L~Ls~N--~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 95 PNLTHLNLSGN--KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp TTCCEEECBSS--SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred CCCCEEeccCC--ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 99999999999 66653221568889999999999999988754 778999999999999887 4554
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.71 E-value=1.7e-17 Score=148.35 Aligned_cols=185 Identities=22% Similarity=0.250 Sum_probs=137.2
Q ss_pred cEEEeeeCc-cccccccCCCCccccccccccCC----C-CCccEEeCCCCCCCCcchhhhHHhhcCC-CCCCEEECCCCC
Q 022302 93 RVMQLSLNE-TIKFNYSSGSGSALLLNMSLFHP----F-EELQRLDLPGNWFTGIYENRAYDSFGSL-KQLKMLNLGDNF 165 (299)
Q Consensus 93 ~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~~~----l-~~L~~L~L~~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n~ 165 (299)
+++.+++++ .+.+. .+..+.. . ++|++|++++|.+++..+..+...+..+ ++|++|++++|.
T Consensus 52 ~L~~L~Ls~N~l~~~-----------~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 52 SVTSLNLSGNSLGFK-----------NSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp TCCEEECCSSCGGGS-----------CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred ceeEEECcCCCCCHH-----------HHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence 788999988 55441 1222333 2 8999999999999988887666667777 899999999999
Q ss_pred CCccchHhhcc-----CCCCcEEeCCCCcCCCcchh---hhhcCCC-CCCEEECCCCcCCCCCccch---hhhccC-CCC
Q 022302 166 FNDSILPYLNT-----LTSLTTLILSDNSIEGSRTK---QGLANLR-YLQVLDLSGNFNITSGSLTR---LGLANL-TNL 232 (299)
Q Consensus 166 l~~~~p~~l~~-----l~~L~~L~L~~n~l~~~~p~---~~~~~l~-~L~~L~Ls~n~~~~~~~~~~---~~~~~l-~~L 232 (299)
+++..+..+.. .++|++|++++|.+++.... ..+..++ +|++|++++| .+.+..+. ..+..+ ++|
T Consensus 121 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~~L 198 (362)
T 3goz_A 121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN--NLASKNCAELAKFLASIPASV 198 (362)
T ss_dssp GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS--CGGGSCHHHHHHHHHTSCTTC
T ss_pred CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC--CCchhhHHHHHHHHHhCCCCC
Confidence 98877765543 36999999999999853322 1345565 9999999999 55544331 234455 599
Q ss_pred cEEECCCCCCCCcc------cccC-CCCCCEEeCCCCccCccCc----ccccCCCCCCEEecCCCCCCC
Q 022302 233 KKLDLGSCGITTIQ------GLAK-LKNLEALDLSYNYYIHSSL----EGLANLTNLQVLDLSDNQNLT 290 (299)
Q Consensus 233 ~~L~Ls~n~l~~~~------~l~~-l~~L~~L~L~~N~l~~~~p----~~l~~l~~L~~L~l~~N~l~g 290 (299)
++|++++|.+++.. .+.. .++|++|+|++|.+++..+ ..+..+++|++|++++|++.+
T Consensus 199 ~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~ 267 (362)
T 3goz_A 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKN 267 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTT
T ss_pred CEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccc
Confidence 99999999988732 2444 4699999999999987655 345678999999999998543
No 109
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.70 E-value=5.5e-17 Score=126.52 Aligned_cols=128 Identities=28% Similarity=0.281 Sum_probs=103.1
Q ss_pred CCCccEEeCCCCCCC-CcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCC
Q 022302 125 FEELQRLDLPGNWFT-GIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLR 203 (299)
Q Consensus 125 l~~L~~L~L~~n~l~-~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~ 203 (299)
.++|++|++++|.++ +.+|. .+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|. .+..++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~ 88 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEG----LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKCP 88 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCS----CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHCT
T ss_pred CccCeEEEccCCcCChhHHHH----HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-HhhhCC
Confidence 467889999999888 56665 678889999999999998865 6788889999999999999876664 677789
Q ss_pred CCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc-----ccCCCCCCEEeCCC
Q 022302 204 YLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG-----LAKLKNLEALDLSY 261 (299)
Q Consensus 204 ~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----l~~l~~L~~L~L~~ 261 (299)
+|++|++++| .+.+......+..+++|++|++++|.+++.+. +..+++|+.|++++
T Consensus 89 ~L~~L~ls~N--~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 89 NLTHLNLSGN--KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TCCEEECTTS--CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCEEECCCC--cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999999 66653211567888999999999998887654 77888999998764
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=1e-18 Score=165.12 Aligned_cols=160 Identities=24% Similarity=0.238 Sum_probs=132.2
Q ss_pred CCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCC-------------CCccchHhhccC------------
Q 022302 123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNF-------------FNDSILPYLNTL------------ 177 (299)
Q Consensus 123 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-------------l~~~~p~~l~~l------------ 177 (299)
..+++|+.|+|++|.+.. +|. .++.+++|+.|++++|. +.+..|..++.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~-Lp~----~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n 420 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTV-LQS----ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 420 (567)
T ss_dssp STTTTSSSCCCCHHHHHH-HHH----HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred ccCccceeccCChhhHHh-hHH----HHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc
Confidence 567888889999888864 454 77778888888876664 344444332211
Q ss_pred --------------------CCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEEC
Q 022302 178 --------------------TSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDL 237 (299)
Q Consensus 178 --------------------~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~L 237 (299)
..|++|++++|.+++ +|. +..+++|+.|++++| .+. .+| ..++.+++|+.|+|
T Consensus 421 ~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~--~~~l~~L~~L~Ls~N--~l~-~lp-~~~~~l~~L~~L~L 493 (567)
T 1dce_A 421 YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH--LEQLLLVTHLDLSHN--RLR-ALP-PALAALRCLEVLQA 493 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC--GGGGTTCCEEECCSS--CCC-CCC-GGGGGCTTCCEEEC
T ss_pred ccchhhhhhhhcccccccCccCceEEEecCCCCCC-CcC--ccccccCcEeecCcc--ccc-ccc-hhhhcCCCCCEEEC
Confidence 257899999999986 663 899999999999999 666 677 68999999999999
Q ss_pred CCCCCCCcccccCCCCCCEEeCCCCccCccC-cccccCCCCCCEEecCCCCCCCccCC
Q 022302 238 GSCGITTIQGLAKLKNLEALDLSYNYYIHSS-LEGLANLTNLQVLDLSDNQNLTTLGK 294 (299)
Q Consensus 238 s~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~l~~N~l~g~ip~ 294 (299)
++|++++.+.+..+++|+.|+|++|.+++.. |+.++.+++|+.|++++|++++..|.
T Consensus 494 s~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 494 SDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 9999999888999999999999999999876 99999999999999999999986654
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=5.8e-17 Score=138.69 Aligned_cols=149 Identities=26% Similarity=0.306 Sum_probs=127.7
Q ss_pred CCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCC
Q 022302 124 PFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLR 203 (299)
Q Consensus 124 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~ 203 (299)
.+.+++.+++++|.+++.. .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++ +++ +..++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~------~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~-~~~--l~~l~ 85 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV------SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISD-LSP--LKDLT 85 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE------CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG--GTTCS
T ss_pred HHHHHHHHHhcCCCccccc------chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCC-Chh--hccCC
Confidence 4566788899999998764 35678999999999999985 45 68899999999999999996 554 89999
Q ss_pred CCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEEec
Q 022302 204 YLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDL 283 (299)
Q Consensus 204 ~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l 283 (299)
+|++|++++| .+.+ ++ .+.. ++|++|++++|++++.+.+..+++|+.|++++|++++. + .+..+++|++|++
T Consensus 86 ~L~~L~L~~N--~l~~-l~--~~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L 157 (263)
T 1xeu_A 86 KLEELSVNRN--RLKN-LN--GIPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDL 157 (263)
T ss_dssp SCCEEECCSS--CCSC-CT--TCCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEEC
T ss_pred CCCEEECCCC--ccCC-cC--cccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEEC
Confidence 9999999999 6654 33 1233 89999999999999988899999999999999999964 4 6899999999999
Q ss_pred CCCCCCCc
Q 022302 284 SDNQNLTT 291 (299)
Q Consensus 284 ~~N~l~g~ 291 (299)
++|++.+.
T Consensus 158 ~~N~i~~~ 165 (263)
T 1xeu_A 158 HGNEITNT 165 (263)
T ss_dssp TTSCCCBC
T ss_pred CCCcCcch
Confidence 99999875
No 112
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.69 E-value=1.5e-16 Score=146.45 Aligned_cols=154 Identities=23% Similarity=0.275 Sum_probs=84.8
Q ss_pred cCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCC--cchhh--
Q 022302 122 FHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEG--SRTKQ-- 197 (299)
Q Consensus 122 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~-- 197 (299)
++.+++|++|++++|.+++... .+++|++|++++|++++ +|.. .++|++|++++|++++ .+|..
T Consensus 233 ~~~l~~L~~L~l~~N~l~~l~~--------~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~ 300 (454)
T 1jl5_A 233 LQNLPFLTTIYADNNLLKTLPD--------LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLY 300 (454)
T ss_dssp CTTCTTCCEEECCSSCCSSCCS--------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCC
T ss_pred cCCCCCCCEEECCCCcCCcccc--------cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCC
Confidence 6677777778887777776422 13566677777666664 3322 2556666666666654 11110
Q ss_pred ----------hhcCC-CCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCc
Q 022302 198 ----------GLANL-RYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIH 266 (299)
Q Consensus 198 ----------~~~~l-~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~ 266 (299)
.+..+ ++|++|++++| .+.+ +| . .+++|++|++++|+++..+. .+++|++|++++|++++
T Consensus 301 ~L~l~~N~l~~i~~~~~~L~~L~Ls~N--~l~~-lp-~---~~~~L~~L~L~~N~l~~lp~--~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 301 YLNASSNEIRSLCDLPPSLEELNVSNN--KLIE-LP-A---LPPRLERLIASFNHLAEVPE--LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp EEECCSSCCSEECCCCTTCCEEECCSS--CCSC-CC-C---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSS
T ss_pred EEECcCCcCCcccCCcCcCCEEECCCC--cccc-cc-c---cCCcCCEEECCCCccccccc--hhhhccEEECCCCCCCc
Confidence 01122 46777777777 5544 44 2 25778888888888887665 56788888888888888
Q ss_pred --cCcccccCC-------------CCCCEEecCCCCCCC--ccCCCc
Q 022302 267 --SSLEGLANL-------------TNLQVLDLSDNQNLT--TLGKPL 296 (299)
Q Consensus 267 --~~p~~l~~l-------------~~L~~L~l~~N~l~g--~ip~~~ 296 (299)
.+|..+..+ ++|++|++++|+++| .+|+++
T Consensus 372 l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl 418 (454)
T 1jl5_A 372 FPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESV 418 (454)
T ss_dssp CCCCCTTCCEEECCC--------------------------------
T ss_pred CCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhH
Confidence 678777766 788888999888887 788765
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=5.1e-16 Score=126.46 Aligned_cols=152 Identities=22% Similarity=0.201 Sum_probs=115.0
Q ss_pred CccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCC
Q 022302 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQ 206 (299)
Q Consensus 127 ~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~ 206 (299)
++++|++++|.+.+..+.. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++ +++..+..+++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~ 105 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE-ISNKMFLGLHQLK 105 (192)
T ss_dssp TCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE-ECSSSSTTCTTCC
T ss_pred CCCEEECCCCcCCccCCcc---ccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCc-cCHHHhcCCCCCC
Confidence 8999999999999887630 37899999999999999999889999999999999999999996 4444789999999
Q ss_pred EEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCC-CCCEEeCCCCccCccCcccccCCCCCCEEecCC
Q 022302 207 VLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLK-NLEALDLSYNYYIHSSLEGLANLTNLQVLDLSD 285 (299)
Q Consensus 207 ~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~ 285 (299)
+|++++| .+.+..| ..+..+++|++|++++|.++....+..+. .++...+..+......|..+.. ....++..
T Consensus 106 ~L~L~~N--~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~l~~---~~l~~l~~ 179 (192)
T 1w8a_A 106 TLNLYDN--QISCVMP-GSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRD---VQIKDLPH 179 (192)
T ss_dssp EEECCSS--CCCEECT-TSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTT---SBGGGSCT
T ss_pred EEECCCC--cCCeeCH-HHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChHHcC---CChhhCcH
Confidence 9999999 8887777 78899999999999999998754321111 1222233344444445554433 33344555
Q ss_pred CCC
Q 022302 286 NQN 288 (299)
Q Consensus 286 N~l 288 (299)
+.+
T Consensus 180 ~~~ 182 (192)
T 1w8a_A 180 SEF 182 (192)
T ss_dssp TTC
T ss_pred hhc
Confidence 554
No 114
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.67 E-value=3.4e-16 Score=149.10 Aligned_cols=83 Identities=22% Similarity=0.167 Sum_probs=64.4
Q ss_pred CCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEEe
Q 022302 203 RYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLD 282 (299)
Q Consensus 203 ~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 282 (299)
++|+.|++++| .+.+ +| ..+++|++|++++|+++..+. .+++|+.|+|++|+++ .+|+.+.++++|+.|+
T Consensus 221 ~~L~~L~Ls~N--~L~~-lp----~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 221 SGLKELIVSGN--RLTS-LP----VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVN 290 (622)
T ss_dssp TTCCEEECCSS--CCSC-CC----CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEE
T ss_pred CCCCEEEccCC--ccCc-CC----CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCC-cCCHHHhhccccCEEE
Confidence 55666677766 4443 33 345778888888888877665 6788999999999999 7888899999999999
Q ss_pred cCCCCCCCccCCC
Q 022302 283 LSDNQNLTTLGKP 295 (299)
Q Consensus 283 l~~N~l~g~ip~~ 295 (299)
+++|++++.+|..
T Consensus 291 L~~N~l~~~~~~~ 303 (622)
T 3g06_A 291 LEGNPLSERTLQA 303 (622)
T ss_dssp CCSCCCCHHHHHH
T ss_pred ecCCCCCCcCHHH
Confidence 9999998877653
No 115
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.67 E-value=1.6e-15 Score=139.63 Aligned_cols=142 Identities=23% Similarity=0.258 Sum_probs=65.8
Q ss_pred CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL 205 (299)
Q Consensus 126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L 205 (299)
++|++|++++|.+++ +| .+..+++|++|++++|++++ +|.. .++|++|++++|++++ +| .+..+++|
T Consensus 131 ~~L~~L~L~~n~l~~-lp-----~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~--~~~~l~~L 197 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-----ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP--ELQNLPFL 197 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-----CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC--CCTTCTTC
T ss_pred CCCCEEECcCCCCCC-Cc-----ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc--cccCCCCC
Confidence 345555555555554 22 34555555555555555543 2221 1345555555555543 33 24445555
Q ss_pred CEEECCCCcCCCCC-------------------ccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCc
Q 022302 206 QVLDLSGNFNITSG-------------------SLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIH 266 (299)
Q Consensus 206 ~~L~Ls~n~~~~~~-------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~ 266 (299)
++|++++| .+.+ .+| .+..+++|++|++++|++++.+. .+++|+.|++++|++++
T Consensus 198 ~~L~l~~N--~l~~l~~~~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 198 TAIYADNN--SLKKLPDLPLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDNYLTD 271 (454)
T ss_dssp CEEECCSS--CCSSCCCCCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECCSSCCSC
T ss_pred CEEECCCC--cCCcCCCCcCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCcccc--cccccCEEECCCCcccc
Confidence 55555554 3322 222 13444444555555444444332 12445555555555443
Q ss_pred cCcccccCCCCCCEEecCCCCCCC
Q 022302 267 SSLEGLANLTNLQVLDLSDNQNLT 290 (299)
Q Consensus 267 ~~p~~l~~l~~L~~L~l~~N~l~g 290 (299)
+|+. .++|++|++++|++++
T Consensus 272 -l~~~---~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 272 -LPEL---PQSLTFLDVSENIFSG 291 (454)
T ss_dssp -CCCC---CTTCCEEECCSSCCSE
T ss_pred -cCcc---cCcCCEEECcCCccCc
Confidence 3322 2455666666666555
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.67 E-value=1e-15 Score=144.28 Aligned_cols=140 Identities=20% Similarity=0.204 Sum_probs=109.7
Q ss_pred CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL 205 (299)
Q Consensus 126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L 205 (299)
++|++|++++|.++.+ | ..+++|++|++++|.+++ +|. +.. +|++|++++|++++ +|. .+++|
T Consensus 80 ~~L~~L~Ls~N~l~~i-p-------~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~----~l~~L 142 (571)
T 3cvr_A 80 PQITVLEITQNALISL-P-------ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE----LPALL 142 (571)
T ss_dssp TTCSEEECCSSCCSCC-C-------CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC----CCTTC
T ss_pred CCCCEEECcCCCCccc-c-------cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC----cCccc
Confidence 6799999999988854 3 346889999999999987 565 554 89999999999886 664 67889
Q ss_pred CEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCC-------
Q 022302 206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNL------- 278 (299)
Q Consensus 206 ~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L------- 278 (299)
++|++++| .+.+ +| . .+++|++|++++|++++.+.+. ++|+.|+|++|.++ .+|. +.. +|
T Consensus 143 ~~L~Ls~N--~l~~-lp-~---~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L 209 (571)
T 3cvr_A 143 EYINADNN--QLTM-LP-E---LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETE 209 (571)
T ss_dssp CEEECCSS--CCSC-CC-C---CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCS-SCCC-CC----------CC
T ss_pred cEEeCCCC--ccCc-CC-C---cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccc
Confidence 99999999 6655 55 2 5788999999999998877644 88999999999998 6776 554 67
Q ss_pred CEEecCCCCCCCccCCCc
Q 022302 279 QVLDLSDNQNLTTLGKPL 296 (299)
Q Consensus 279 ~~L~l~~N~l~g~ip~~~ 296 (299)
+.|++++|+|+ .||+.+
T Consensus 210 ~~L~Ls~N~l~-~lp~~l 226 (571)
T 3cvr_A 210 IFFRCRENRIT-HIPENI 226 (571)
T ss_dssp EEEECCSSCCC-CCCGGG
T ss_pred eEEecCCCcce-ecCHHH
Confidence 99999999997 477643
No 117
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.66 E-value=1.3e-15 Score=122.17 Aligned_cols=131 Identities=22% Similarity=0.197 Sum_probs=91.7
Q ss_pred ccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCE
Q 022302 128 LQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQV 207 (299)
Q Consensus 128 L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~ 207 (299)
.+.++++++.++.... . -.++|++|++++|++++..+..+..+++|++|++++|++++ ++...+..+++|++
T Consensus 9 ~~~l~~~~~~l~~~p~-----~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~ 80 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-----G--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTI 80 (177)
T ss_dssp TTEEECCSSCCSSCCT-----T--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred CCEEEecCCCCccCCC-----C--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE-eChhHccCCCccCE
Confidence 4678888887776543 2 23678888888888876666667778888888888888774 45445677788888
Q ss_pred EECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccCccCc
Q 022302 208 LDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSSL 269 (299)
Q Consensus 208 L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~p 269 (299)
|++++| .+.+..+ ..+..+++|++|++++|++++.+. +..+++|++|++++|.+++..|
T Consensus 81 L~l~~N--~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 81 LYLHEN--KLQSLPN-GVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp EECCSS--CCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred EECCCC--CccccCH-HHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 888887 5554433 456677777777777777776654 4566777777777777776544
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=1.1e-16 Score=155.49 Aligned_cols=158 Identities=22% Similarity=0.148 Sum_probs=103.6
Q ss_pred CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCE-----EECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhc
Q 022302 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKM-----LNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA 200 (299)
Q Consensus 126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~-----L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 200 (299)
+.++.|+|.+|.+..... .+....+|+. ++++.|.+. ..+..+..+++|++|+|++|.+. .+|. .+.
T Consensus 173 ~~~~~l~L~~n~~~~~~~-----~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~-~~~ 244 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQ-----ALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISA-NIF 244 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCS-CCCG-GGG
T ss_pred CccceEEeeCCCCCcchh-----hHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCCh-hhc
Confidence 567889998888877533 2222222322 233334443 45778889999999999999998 5776 567
Q ss_pred CCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc-ccCCCCCCEEeCCCCccCccCcccccCCCCCC
Q 022302 201 NLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG-LAKLKNLEALDLSYNYYIHSSLEGLANLTNLQ 279 (299)
Q Consensus 201 ~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 279 (299)
.+++|++|+|++| .+. .+| ..+..+++|++|+|++|+++.++. +..+++|++|+|++|.++ .+|..|+.+++|+
T Consensus 245 ~l~~L~~L~Ls~N--~l~-~lp-~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~ 319 (727)
T 4b8c_D 245 KYDFLTRLYLNGN--SLT-ELP-AEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQ 319 (727)
T ss_dssp GCCSCSCCBCTTS--CCS-CCC-GGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCC
T ss_pred CCCCCCEEEeeCC--cCc-ccC-hhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCcc
Confidence 9999999999999 666 677 778999999999999999997754 889999999999999998 7898999999999
Q ss_pred EEecCCCCCCCccCCCc
Q 022302 280 VLDLSDNQNLTTLGKPL 296 (299)
Q Consensus 280 ~L~l~~N~l~g~ip~~~ 296 (299)
+|+|++|+++|.+|+.+
T Consensus 320 ~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 320 FLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CEECTTSCCCSHHHHHH
T ss_pred EEeCCCCccCCCChHHH
Confidence 99999999999888754
No 119
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.65 E-value=4.5e-17 Score=149.79 Aligned_cols=167 Identities=19% Similarity=0.095 Sum_probs=119.7
Q ss_pred ccCCCCCccEEeCCCCCCCCcchhhhHHhh-cCCCCCCEEECCCCCCCcc----chHhhccCCCCcEEeCCCCcCCCcch
Q 022302 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSF-GSLKQLKMLNLGDNFFNDS----ILPYLNTLTSLTTLILSDNSIEGSRT 195 (299)
Q Consensus 121 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p 195 (299)
.+..+++|++|++++|.+.+.....+...+ ..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 345667788888888877654332222222 3577888888888888754 56667778888888888888764322
Q ss_pred hhhhc-----CCCCCCEEECCCCcCCCCCc----cchhhhccCCCCcEEECCCCCCCCcc--c----cc-CCCCCCEEeC
Q 022302 196 KQGLA-----NLRYLQVLDLSGNFNITSGS----LTRLGLANLTNLKKLDLGSCGITTIQ--G----LA-KLKNLEALDL 259 (299)
Q Consensus 196 ~~~~~-----~l~~L~~L~Ls~n~~~~~~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~--~----l~-~l~~L~~L~L 259 (299)
. .+. ..++|++|++++| .+.+. ++ ..+..+++|++|++++|.+++.. . +. ..++|++|++
T Consensus 302 ~-~l~~~l~~~~~~L~~L~L~~n--~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 377 (461)
T 1z7x_W 302 R-LLCETLLEPGCQLESLWVKSC--SFTAACCSHFS-SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377 (461)
T ss_dssp H-HHHHHHTSTTCCCCEEECTTS--CCBGGGHHHHH-HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred H-HHHHHhccCCccceeeEcCCC--CCchHHHHHHH-HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEEC
Confidence 2 222 2368888888888 55543 34 56677899999999999887642 1 22 2679999999
Q ss_pred CCCccCc----cCcccccCCCCCCEEecCCCCCCCc
Q 022302 260 SYNYYIH----SSLEGLANLTNLQVLDLSDNQNLTT 291 (299)
Q Consensus 260 ~~N~l~~----~~p~~l~~l~~L~~L~l~~N~l~g~ 291 (299)
++|.+++ .+|..+..+++|++|++++|++++.
T Consensus 378 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp TTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred CCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 9999986 7788888899999999999998754
No 120
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=3e-15 Score=120.04 Aligned_cols=112 Identities=25% Similarity=0.252 Sum_probs=86.3
Q ss_pred CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL 205 (299)
Q Consensus 126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L 205 (299)
++|++|++++|.+.+..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++++ +++..+..+++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L 102 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS-LPNGVFDKLTQL 102 (177)
T ss_dssp TTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred CCCcEEEeCCCcccEeCHH----HhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc-cCHHHhhCCccc
Confidence 6788888888888877665 67788888888888888887666667888888888888888885 444467788888
Q ss_pred CEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCc
Q 022302 206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTI 245 (299)
Q Consensus 206 ~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 245 (299)
++|++++| .+.+. +...+..+++|++|++++|.+++.
T Consensus 103 ~~L~l~~N--~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 103 KELALDTN--QLKSV-PDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CEEECCSS--CCSCC-CTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CEEECcCC--cceEe-CHHHhcCCcccCEEEecCCCeecc
Confidence 88888888 55543 425567788888888888887764
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=2.3e-15 Score=122.75 Aligned_cols=126 Identities=21% Similarity=0.207 Sum_probs=102.1
Q ss_pred cEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEE
Q 022302 129 QRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVL 208 (299)
Q Consensus 129 ~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L 208 (299)
+.+++++|.++.... .+ .++|++|++++|.++ .+|..+..+++|++|++++|++++ +++..|..+++|++|
T Consensus 13 ~~l~~~~~~l~~ip~-----~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~-i~~~~f~~l~~L~~L 83 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK-----GI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST-LSNQSFSNMTQLLTL 83 (193)
T ss_dssp TEEECTTSCCSSCCS-----CC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred CEEEcCCCCCCcCCC-----CC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCE-eCHhHccCCCCCCEE
Confidence 678999998886543 22 368999999999997 567888899999999999999986 454578899999999
Q ss_pred ECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCccCc
Q 022302 209 DLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYYIH 266 (299)
Q Consensus 209 ~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~ 266 (299)
++++| .+.+..+ ..+..+++|++|++++|.++..+. +..+++|+.|++++|.+..
T Consensus 84 ~Ls~N--~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 84 ILSYN--RLRCIPP-RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp ECCSS--CCCBCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ECCCC--ccCEeCH-HHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 99999 6665555 678888899999999998887764 7778888888888888764
No 122
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.62 E-value=1e-16 Score=147.49 Aligned_cols=168 Identities=22% Similarity=0.170 Sum_probs=114.2
Q ss_pred cccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCC-CCCEEECCCCCCCc----cchHhhccCCCCcEEeCCCCcCCCcc
Q 022302 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLK-QLKMLNLGDNFFND----SILPYLNTLTSLTTLILSDNSIEGSR 194 (299)
Q Consensus 120 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~ 194 (299)
..+..+++|++|++++|.+....+..+...+.... +|++|++++|.++. .++..+..+++|++|++++|.+++..
T Consensus 50 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 129 (461)
T 1z7x_W 50 SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG 129 (461)
T ss_dssp HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH
T ss_pred HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHH
Confidence 34566778888888888776654432222222222 68888888888774 45777778888888888888876432
Q ss_pred hhh----hhcCCCCCCEEECCCCcCCCCCc----cchhhhccCCCCcEEECCCCCCCCcc--ccc-----CCCCCCEEeC
Q 022302 195 TKQ----GLANLRYLQVLDLSGNFNITSGS----LTRLGLANLTNLKKLDLGSCGITTIQ--GLA-----KLKNLEALDL 259 (299)
Q Consensus 195 p~~----~~~~l~~L~~L~Ls~n~~~~~~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~-----~l~~L~~L~L 259 (299)
+.. .....++|++|++++| .+.+. ++ ..+..+++|++|++++|.+++.. .+. ..++|++|++
T Consensus 130 ~~~l~~~l~~~~~~L~~L~L~~n--~l~~~~~~~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L 206 (461)
T 1z7x_W 130 LQLLCEGLLDPQCRLEKLQLEYC--SLSAASCEPLA-SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 206 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTS--CCBGGGHHHHH-HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEEC
T ss_pred HHHHHHHHhcCCCcceEEECCCC--CCCHHHHHHHH-HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEc
Confidence 221 1223457888888888 55442 23 45667788888888888876542 121 3568999999
Q ss_pred CCCccCcc----CcccccCCCCCCEEecCCCCCCC
Q 022302 260 SYNYYIHS----SLEGLANLTNLQVLDLSDNQNLT 290 (299)
Q Consensus 260 ~~N~l~~~----~p~~l~~l~~L~~L~l~~N~l~g 290 (299)
++|.+++. ++..+..+++|++|++++|++.+
T Consensus 207 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 207 ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp TTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred cCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 99988864 57777788999999999998764
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.62 E-value=1.1e-15 Score=122.52 Aligned_cols=133 Identities=23% Similarity=0.195 Sum_probs=75.1
Q ss_pred ccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCC-CCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhh
Q 022302 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLK-QLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL 199 (299)
Q Consensus 121 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 199 (299)
.+.++++|++|++++|.++.. + .+..+. +|++|++++|.+++. ..+..+++|++|++++|++++ +|+..+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~-----~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~~ 84 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-E-----NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-IGEGLD 84 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-C-----CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-ECSCHH
T ss_pred hcCCcCCceEEEeeCCCCchh-H-----HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-cCcchh
Confidence 345566777777777776654 3 233333 677777777766653 456666666677776666663 443344
Q ss_pred cCCCCCCEEECCCCcCCCCCccch-hhhccCCCCcEEECCCCCCCCccc-----ccCCCCCCEEeCCCCccC
Q 022302 200 ANLRYLQVLDLSGNFNITSGSLTR-LGLANLTNLKKLDLGSCGITTIQG-----LAKLKNLEALDLSYNYYI 265 (299)
Q Consensus 200 ~~l~~L~~L~Ls~n~~~~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~-----l~~l~~L~~L~L~~N~l~ 265 (299)
..+++|++|++++| .+. .++. ..+..+++|++|++++|.++..+. +..+++|+.|++++|.+.
T Consensus 85 ~~l~~L~~L~L~~N--~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 85 QALPDLTELILTNN--SLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHCTTCCEEECCSC--CCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hcCCCCCEEECCCC--cCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 66666666666666 332 2331 145555566666666655554432 445555555555555443
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=7.9e-15 Score=119.50 Aligned_cols=111 Identities=26% Similarity=0.348 Sum_probs=96.8
Q ss_pred CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL 205 (299)
Q Consensus 126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L 205 (299)
++|++|++++|.++... . .+..+++|++|++++|.+++..+..|..+++|++|+|++|++++ +++..|..+++|
T Consensus 31 ~~l~~L~L~~n~i~~ip-~----~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~-i~~~~f~~l~~L 104 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP-K----ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSL 104 (193)
T ss_dssp TTCCEEECCSSCCCSCC-G----GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTC
T ss_pred CCCCEEECCCCcCchhH-H----HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE-eCHHHhCCCCCC
Confidence 58999999999998654 4 78999999999999999998888889999999999999999996 555579999999
Q ss_pred CEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCc
Q 022302 206 QVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTI 245 (299)
Q Consensus 206 ~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 245 (299)
++|++++| .+... +...+..+++|+.|++++|.+...
T Consensus 105 ~~L~L~~N--~l~~~-~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 105 RLLSLHGN--DISVV-PEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CEEECCSS--CCCBC-CTTTTTTCTTCCEEECCSSCEECS
T ss_pred CEEECCCC--CCCee-ChhhhhcCccccEEEeCCCCeecC
Confidence 99999999 66644 436788999999999999988653
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.61 E-value=1.4e-15 Score=122.01 Aligned_cols=133 Identities=22% Similarity=0.178 Sum_probs=109.7
Q ss_pred hhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhcc
Q 022302 149 SFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLAN 228 (299)
Q Consensus 149 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~ 228 (299)
.+..+++|++|++++|.++. +|......++|++|++++|.+++ + ..+..+++|++|++++| .+.+. ++..+..
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~-~--~~l~~l~~L~~L~Ls~N--~l~~~-~~~~~~~ 86 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-L--DGFPLLRRLKTLLVNNN--RICRI-GEGLDQA 86 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-E--CCCCCCSSCCEEECCSS--CCCEE-CSCHHHH
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCc-c--cccccCCCCCEEECCCC--ccccc-Ccchhhc
Confidence 46678899999999999985 45433334499999999999985 4 26899999999999999 66644 4245689
Q ss_pred CCCCcEEECCCCCCCCcc---cccCCCCCCEEeCCCCccCccCccc----ccCCCCCCEEecCCCCCC
Q 022302 229 LTNLKKLDLGSCGITTIQ---GLAKLKNLEALDLSYNYYIHSSLEG----LANLTNLQVLDLSDNQNL 289 (299)
Q Consensus 229 l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~l~~N~l~ 289 (299)
+++|++|++++|.++..+ .+..+++|+.|++++|.++ .+|.. +..+++|++|++++|.+.
T Consensus 87 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 87 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999999999998866 3788999999999999998 56664 889999999999999763
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.60 E-value=1.4e-14 Score=137.95 Aligned_cols=60 Identities=25% Similarity=0.179 Sum_probs=42.2
Q ss_pred CCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCCccCCCc
Q 022302 230 TNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLTTLGKPL 296 (299)
Q Consensus 230 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ip~~~ 296 (299)
++|+.|++++|++++.+ ..+++|+.|++++|.++ .+|. .+++|++|++++|+++ .+|+.+
T Consensus 221 ~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l 280 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESL 280 (622)
T ss_dssp TTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGG
T ss_pred CCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHH
Confidence 56677777777766654 45577777888877777 4555 5677888888888887 677644
No 127
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.58 E-value=8.6e-18 Score=137.62 Aligned_cols=158 Identities=27% Similarity=0.243 Sum_probs=126.1
Q ss_pred cCCCCCccEEeCCCCCCCCcchh--hhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhh
Q 022302 122 FHPFEELQRLDLPGNWFTGIYEN--RAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL 199 (299)
Q Consensus 122 ~~~l~~L~~L~L~~n~l~~~~~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 199 (299)
+.....++.++++.+.+.+..|. .+...+..+++|++|++++|.+++ +| .+..+++|++|++++|+++ .+|. .+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~-~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIEN-LD 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSS-HH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccc-hh
Confidence 34445666667777777666542 122267889999999999999987 56 7889999999999999998 5775 67
Q ss_pred cCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc---cccCCCCCCEEeCCCCccCccCccc-----
Q 022302 200 ANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ---GLAKLKNLEALDLSYNYYIHSSLEG----- 271 (299)
Q Consensus 200 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~p~~----- 271 (299)
..+++|++|++++| .+.+ ++ .+..+++|++|++++|.+++.+ .+..+++|++|++++|.+++.+|..
T Consensus 90 ~~~~~L~~L~L~~N--~l~~-l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 164 (198)
T 1ds9_A 90 AVADTLEELWISYN--QIAS-LS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164 (198)
T ss_dssp HHHHHCSEEEEEEE--ECCC-HH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHH
T ss_pred hcCCcCCEEECcCC--cCCc-CC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHH
Confidence 77899999999999 6665 44 5788999999999999999864 3888999999999999998776653
Q ss_pred -----ccCCCCCCEEecCCCCCCC
Q 022302 272 -----LANLTNLQVLDLSDNQNLT 290 (299)
Q Consensus 272 -----l~~l~~L~~L~l~~N~l~g 290 (299)
+..+++|++|| +|+++.
T Consensus 165 ~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 165 YRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHHHHCSSCSEEC--CGGGTT
T ss_pred HHHHHHHhCCCcEEEC--CcccCH
Confidence 78899999987 677654
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=1.3e-17 Score=136.60 Aligned_cols=139 Identities=27% Similarity=0.281 Sum_probs=119.3
Q ss_pred hhcCCCCCCEEECCCCCCCccchH------hhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccc
Q 022302 149 SFGSLKQLKMLNLGDNFFNDSILP------YLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLT 222 (299)
Q Consensus 149 ~l~~l~~L~~L~Ls~n~l~~~~p~------~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~ 222 (299)
.+.....++.++++.+.+++..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++| .+. .+|
T Consensus 13 ~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n--~l~-~l~ 86 (198)
T 1ds9_A 13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS--SLSGMENLRILSLGRN--LIK-KIE 86 (198)
T ss_dssp HHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEE--EEC-SCS
T ss_pred HHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCC--Ccc-ccc
Confidence 466677888888888888877665 89999999999999999986 66 6889999999999999 555 456
Q ss_pred hhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCccCccCc-ccccCCCCCCEEecCCCCCCCccCC
Q 022302 223 RLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYYIHSSL-EGLANLTNLQVLDLSDNQNLTTLGK 294 (299)
Q Consensus 223 ~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~l~~N~l~g~ip~ 294 (299)
..+..+++|++|++++|++++.+.+..+++|+.|++++|.+++..+ +.+..+++|++|++++|++.+.+|.
T Consensus 87 -~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 87 -NLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp -SHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred -chhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 5677789999999999999998888889999999999999995332 5789999999999999999877664
No 129
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=1.1e-14 Score=129.52 Aligned_cols=161 Identities=22% Similarity=0.158 Sum_probs=126.9
Q ss_pred CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccch-HhhccCCCCcE-EeCCCCcCCCcchhhhhcCCC
Q 022302 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSIL-PYLNTLTSLTT-LILSDNSIEGSRTKQGLANLR 203 (299)
Q Consensus 126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~-L~L~~n~l~~~~p~~~~~~l~ 203 (299)
+++++|+|++|+++.+.+. .|.++++|++|+|++|++.+.+| ..|.+++++++ +.+..|+++. +++..|..++
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~~l~ 104 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKG----AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLP 104 (350)
T ss_dssp TTCSEEEEESCCCSEECTT----SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBCCCT
T ss_pred CCCCEEEccCCcCCCcCHH----HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhhhcc
Confidence 5799999999999988776 78999999999999999876665 46788988775 5667788884 6656899999
Q ss_pred CCCEEECCCCcCCCCCccchhhhccCCCCcEEECCC-CCCCCccc--ccCC-CCCCEEeCCCCccCccCcccccCCCCCC
Q 022302 204 YLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGS-CGITTIQG--LAKL-KNLEALDLSYNYYIHSSLEGLANLTNLQ 279 (299)
Q Consensus 204 ~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~--l~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 279 (299)
+|++|++++| .+....+ ..+....++..+++.+ ++++..+. +..+ ..++.|++++|+++ .+|+.....++|+
T Consensus 105 ~L~~L~l~~n--~l~~~~~-~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~ 180 (350)
T 4ay9_X 105 NLQYLLISNT--GIKHLPD-VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLD 180 (350)
T ss_dssp TCCEEEEEEE--CCSSCCC-CTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEE
T ss_pred cccccccccc--ccccCCc-hhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchh
Confidence 9999999999 6654433 4556677888999966 45666543 4444 46899999999999 5666666778899
Q ss_pred EEecCCCCCCCccCCC
Q 022302 280 VLDLSDNQNLTTLGKP 295 (299)
Q Consensus 280 ~L~l~~N~l~g~ip~~ 295 (299)
++++.+|+..+.||+.
T Consensus 181 ~l~l~~~n~l~~i~~~ 196 (350)
T 4ay9_X 181 ELNLSDNNNLEELPND 196 (350)
T ss_dssp EEECTTCTTCCCCCTT
T ss_pred HHhhccCCcccCCCHH
Confidence 9999876655678864
No 130
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.52 E-value=6.4e-15 Score=132.12 Aligned_cols=161 Identities=24% Similarity=0.232 Sum_probs=94.2
Q ss_pred CCccEEeCCCCCCCCcchhhhHHhhcCC-CCCCEEECCCCCCCccchHhhc-cCCCCcEEeCCCCcCCCcchhhhh----
Q 022302 126 EELQRLDLPGNWFTGIYENRAYDSFGSL-KQLKMLNLGDNFFNDSILPYLN-TLTSLTTLILSDNSIEGSRTKQGL---- 199 (299)
Q Consensus 126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~---- 199 (299)
+.|++|++++|.++......+...+... ++|++|+|++|.+++.....+. .+++|++|+|++|.++..... .+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~-~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK-DLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH-HHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH-HHHHHH
Confidence 4567777777777665544333344432 5777777777777544333332 345677777777776532221 22
Q ss_pred -cCCCCCCEEECCCCcCCCCC----ccchhhhccCCCCcEEECCCCCCCCcc------cccCCCCCCEEeCCCCccCcc-
Q 022302 200 -ANLRYLQVLDLSGNFNITSG----SLTRLGLANLTNLKKLDLGSCGITTIQ------GLAKLKNLEALDLSYNYYIHS- 267 (299)
Q Consensus 200 -~~l~~L~~L~Ls~n~~~~~~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~l~~l~~L~~L~L~~N~l~~~- 267 (299)
...++|++|+|++| .+.. .+. ..+..+++|++|+|++|.+++.. .+...++|++|+|++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n--~l~~~~~~~l~-~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 151 LHDQCQITTLRLSNN--PLTAAGVAVLM-EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HSTTCCCCEEECCSS--CCHHHHHHHHH-HHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HhcCCccceeeCCCC--CCChHHHHHHH-HHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 23566777777777 4332 122 33455667777777777766432 255566777777777777643
Q ss_pred ---CcccccCCCCCCEEecCCCCCCC
Q 022302 268 ---SLEGLANLTNLQVLDLSDNQNLT 290 (299)
Q Consensus 268 ---~p~~l~~l~~L~~L~l~~N~l~g 290 (299)
++..+...++|++|+|++|+|+.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 33344456677777777777653
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.52 E-value=5.7e-14 Score=132.59 Aligned_cols=155 Identities=22% Similarity=0.251 Sum_probs=120.8
Q ss_pred ccccCCCCCccEEe-CCCCCCCCcchhh----hHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCc
Q 022302 119 MSLFHPFEELQRLD-LPGNWFTGIYENR----AYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGS 193 (299)
Q Consensus 119 ~~~~~~l~~L~~L~-L~~n~l~~~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 193 (299)
+..++.+++|+.|+ ++.|.+....... ....+. ...|+.|++++|.+++ +|. ++.+++|++|++++|+++ .
T Consensus 402 ~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~ 477 (567)
T 1dce_A 402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME-YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-A 477 (567)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHH-HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-C
T ss_pred HHHHHHHHhcccCcchhhcccchhhhhhhhcccccccC-ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-c
Confidence 34567788888888 6665443221100 000111 1359999999999987 565 999999999999999999 6
Q ss_pred chhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCc--c-cccCCCCCCEEeCCCCccCccCcc
Q 022302 194 RTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTI--Q-GLAKLKNLEALDLSYNYYIHSSLE 270 (299)
Q Consensus 194 ~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~-~l~~l~~L~~L~L~~N~l~~~~p~ 270 (299)
+|. .++.+++|+.|++++| .+.+ +| .+..+++|+.|++++|++++. + .+..+++|+.|+|++|.+++..|.
T Consensus 478 lp~-~~~~l~~L~~L~Ls~N--~l~~-lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 478 LPP-ALAALRCLEVLQASDN--ALEN-VD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CCG-GGGGCTTCCEEECCSS--CCCC-CG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred cch-hhhcCCCCCEEECCCC--CCCC-Cc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 886 7999999999999999 7766 55 689999999999999999987 3 489999999999999999976543
Q ss_pred c---ccCCCCCCEEec
Q 022302 271 G---LANLTNLQVLDL 283 (299)
Q Consensus 271 ~---l~~l~~L~~L~l 283 (299)
. +..+++|+.|++
T Consensus 552 ~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 552 QERLAEMLPSVSSILT 567 (567)
T ss_dssp TTHHHHHCTTCSEEEC
T ss_pred HHHHHHHCcccCccCC
Confidence 2 245899999875
No 132
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=3.2e-13 Score=107.62 Aligned_cols=106 Identities=22% Similarity=0.185 Sum_probs=75.2
Q ss_pred CCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEE
Q 022302 156 LKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKL 235 (299)
Q Consensus 156 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L 235 (299)
.+.+++++|.++. +|..+ .++|++|++++|++++..+ ..|..+++|++|++++| .+.+..+ ..+..+++|++|
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N--~l~~l~~-~~f~~l~~L~~L 83 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEP-GVFDRLTQLTRLDLDNN--QLTVLPA-GVFDKLTQLTQL 83 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSS--CCCCCCT-TTTTTCTTCCEE
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccCh-hhhcCcccCCEEECCCC--CcCccCh-hhccCCCCCCEE
Confidence 5678888888874 55544 3678888888888876434 46778888888888888 5554433 556777778888
Q ss_pred ECCCCCCCCccc--ccCCCCCCEEeCCCCccCccC
Q 022302 236 DLGSCGITTIQG--LAKLKNLEALDLSYNYYIHSS 268 (299)
Q Consensus 236 ~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~ 268 (299)
++++|++++.+. +..+++|+.|+|++|.++...
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 888887777653 667777777777777776543
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=4.1e-13 Score=107.01 Aligned_cols=83 Identities=30% Similarity=0.316 Sum_probs=47.6
Q ss_pred CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL 205 (299)
Q Consensus 126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L 205 (299)
++|++|++++|.+++..+. .|..+++|++|++++|++++..+..+..+++|++|+|++|++++ +++..|..+++|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L 104 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPG----VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSL 104 (170)
T ss_dssp TTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred CCCcEEEcCCCcCCccChh----hhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCE-eCHHHhcCCCCC
Confidence 4556666666666665554 55556666666666666655444445556666666666666553 333345555666
Q ss_pred CEEECCCC
Q 022302 206 QVLDLSGN 213 (299)
Q Consensus 206 ~~L~Ls~n 213 (299)
++|++++|
T Consensus 105 ~~L~L~~N 112 (170)
T 3g39_A 105 THIWLLNN 112 (170)
T ss_dssp CEEECCSS
T ss_pred CEEEeCCC
Confidence 66666665
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=3.4e-13 Score=107.93 Aligned_cols=104 Identities=23% Similarity=0.218 Sum_probs=75.0
Q ss_pred CCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEE
Q 022302 156 LKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKL 235 (299)
Q Consensus 156 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L 235 (299)
-+.+++++|.++ .+|..+. ++|++|++++|++++..| ..|..+++|++|+|++| .+.+. |...+..+++|++|
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N--~l~~i-~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEP-GVFDHLVNLQQLYFNSN--KLTAI-PTGVFDKLTQLTQL 86 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS--CCCCC-CTTTTTTCTTCCEE
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCH-HHhcCCcCCCEEECCCC--CCCcc-ChhHhCCcchhhEE
Confidence 367888888885 4565443 778888888888876434 46788888888888888 66553 32556777888888
Q ss_pred ECCCCCCCCccc--ccCCCCCCEEeCCCCccCc
Q 022302 236 DLGSCGITTIQG--LAKLKNLEALDLSYNYYIH 266 (299)
Q Consensus 236 ~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~ 266 (299)
++++|++++.+. +..+++|++|+|++|.+..
T Consensus 87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 888888777653 6677778888888877774
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=6.9e-13 Score=106.13 Aligned_cols=83 Identities=29% Similarity=0.326 Sum_probs=57.3
Q ss_pred CCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCC
Q 022302 126 EELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYL 205 (299)
Q Consensus 126 ~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L 205 (299)
++|++|++++|.+.+..|. .|..+++|++|+|++|++++..+..+..+++|++|+|++|++++ +|+..+..+++|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPG----VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSL 107 (174)
T ss_dssp TTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred CCCcEEEeCCCCccccCHH----HhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce-eCHHHhccccCC
Confidence 5677777777777776665 66777777777777777776555556677777777777777764 444346667777
Q ss_pred CEEECCCC
Q 022302 206 QVLDLSGN 213 (299)
Q Consensus 206 ~~L~Ls~n 213 (299)
++|++++|
T Consensus 108 ~~L~L~~N 115 (174)
T 2r9u_A 108 THIYLYNN 115 (174)
T ss_dssp SEEECCSS
T ss_pred CEEEeCCC
Confidence 77777777
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.35 E-value=4.7e-12 Score=111.47 Aligned_cols=164 Identities=16% Similarity=0.186 Sum_probs=106.3
Q ss_pred ccccccCC--------CCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCC
Q 022302 117 LNMSLFHP--------FEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDN 188 (299)
Q Consensus 117 ~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 188 (299)
++...|.+ +++|++|++.+ .++.+.+. +|.++++|+.+++++|.+....+..|..+.++.++.+..+
T Consensus 84 I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~----aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~ 158 (329)
T 3sb4_A 84 VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDA----AFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSS 158 (329)
T ss_dssp ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTT----TTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCT
T ss_pred cCHHHhcccccccccccCCCcEEECCc-cccchhHH----HhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcch
Confidence 44566777 99999999988 78877666 8899999999999999876555566666666666655442
Q ss_pred cC-------C-------------------Ccchhhhh---------------------------cCCCCCCEEECCCCcC
Q 022302 189 SI-------E-------------------GSRTKQGL---------------------------ANLRYLQVLDLSGNFN 215 (299)
Q Consensus 189 ~l-------~-------------------~~~p~~~~---------------------------~~l~~L~~L~Ls~n~~ 215 (299)
.. . +.++...+ ..+++|+.+++++|
T Consensus 159 ~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-- 236 (329)
T 3sb4_A 159 DAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-- 236 (329)
T ss_dssp HHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB--
T ss_pred hhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC--
Confidence 11 0 00000000 12567777777776
Q ss_pred CCCCccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCC-EEeCCCCccCccCcccccCCCCCCEEecCCCCCCC
Q 022302 216 ITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLE-ALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLT 290 (299)
Q Consensus 216 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~-~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g 290 (299)
... .++...|.++++|+.+++.+| ++.+. .|..+++|+ .+++.+ .++...+.+|.++++|+.|++++|++..
T Consensus 237 ~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 237 NAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp CCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred Ccc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence 433 344466777777777777776 55443 366777777 777766 5554555677777777777777777653
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=2.6e-13 Score=121.66 Aligned_cols=185 Identities=18% Similarity=0.154 Sum_probs=124.4
Q ss_pred CcEEEeeeCc-cccccccCCCCcccccccccc-CCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCcc
Q 022302 92 RRVMQLSLNE-TIKFNYSSGSGSALLLNMSLF-HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS 169 (299)
Q Consensus 92 ~~v~~l~l~~-~l~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 169 (299)
..+..+++++ .+.... ...+ ...+ ...++|++|+|++|.++......+. ..+++|++|+|++|.+++.
T Consensus 72 ~~L~~L~Ls~n~l~~~~------~~~l-~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~---~~L~~L~~L~Ls~n~l~~~ 141 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVK------CTVV-AAVLGSGRHALDEVNLASCQLDPAGLRTLL---PVFLRARKLGLQLNSLGPE 141 (372)
T ss_dssp TTCCEEECTTSCCCHHH------HHHH-HHHHSSCSSCEEEEECTTCCCCHHHHHHTH---HHHHTEEEEECCSSCCCHH
T ss_pred hhCCEEEecCCCCCHHH------HHHH-HHHHhhCCCCceEEEecCCCCCHHHHHHHH---HHHHhccHhhcCCCCCCHH
Confidence 3577888887 543310 0001 1112 2347999999999998765444222 2355899999999999876
Q ss_pred chHhhc-----cCCCCcEEeCCCCcCCCcch---hhhhcCCCCCCEEECCCCcCCCCCc----cchhhhccCCCCcEEEC
Q 022302 170 ILPYLN-----TLTSLTTLILSDNSIEGSRT---KQGLANLRYLQVLDLSGNFNITSGS----LTRLGLANLTNLKKLDL 237 (299)
Q Consensus 170 ~p~~l~-----~l~~L~~L~L~~n~l~~~~p---~~~~~~l~~L~~L~Ls~n~~~~~~~----~~~~~~~~l~~L~~L~L 237 (299)
....+. ..++|++|+|++|.++.... ...+..+++|++|+|++| .+.+. +. ..+...++|+.|+|
T Consensus 142 ~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N--~l~~~g~~~L~-~~L~~~~~L~~L~L 218 (372)
T 3un9_A 142 ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT--GLGDEGLELLA-AQLDRNRQLQELNV 218 (372)
T ss_dssp HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS--SCHHHHHHHHH-HHGGGCSCCCEEEC
T ss_pred HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC--CCCcHHHHHHH-HHHhcCCCcCeEEC
Confidence 555553 46889999999999874211 124577899999999999 54422 23 45677889999999
Q ss_pred CCCCCCCcc------cccCCCCCCEEeCCCCccCccCcccccCC---CC--CCEEe--cCCCCCC
Q 022302 238 GSCGITTIQ------GLAKLKNLEALDLSYNYYIHSSLEGLANL---TN--LQVLD--LSDNQNL 289 (299)
Q Consensus 238 s~n~l~~~~------~l~~l~~L~~L~L~~N~l~~~~p~~l~~l---~~--L~~L~--l~~N~l~ 289 (299)
++|.+++.. .+...++|++|+|++|.+++.....+..+ .. |+.+. +..|.+.
T Consensus 219 s~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 219 AYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp CSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 999998643 25567899999999999987655555433 21 66666 6666554
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.33 E-value=3.6e-13 Score=127.55 Aligned_cols=165 Identities=14% Similarity=0.060 Sum_probs=111.6
Q ss_pred CCCCCccEEeCCC-----------CCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhcc-CCCCcEEeCC----
Q 022302 123 HPFEELQRLDLPG-----------NWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNT-LTSLTTLILS---- 186 (299)
Q Consensus 123 ~~l~~L~~L~L~~-----------n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~L~---- 186 (299)
..+++|++|++++ |.+++.... .....+++|++|+++.|.+++..+..++. +++|++|+++
T Consensus 339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~---~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~ 415 (592)
T 3ogk_B 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI---ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR 415 (592)
T ss_dssp HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH---HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSC
T ss_pred HhCCCCCEEEeecCccccccccccCccCHHHHH---HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCC
Confidence 3456677777762 344433211 12345777888888777777766666665 7888888885
Q ss_pred CCcCCCc-----chhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--c-ccCCCCCCEEe
Q 022302 187 DNSIEGS-----RTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--G-LAKLKNLEALD 258 (299)
Q Consensus 187 ~n~l~~~-----~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-l~~l~~L~~L~ 258 (299)
.|.+++. ++. .+..+++|++|++++|.....+.........+++|++|++++|++++.. . +..+++|+.|+
T Consensus 416 ~n~l~~~p~~~~~~~-~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 494 (592)
T 3ogk_B 416 EERITDLPLDNGVRS-LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLE 494 (592)
T ss_dssp CSCCSSCCCHHHHHH-HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEE
T ss_pred CccccCchHHHHHHH-HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeee
Confidence 5666642 222 4666888888888765212444333233345889999999999987632 2 57789999999
Q ss_pred CCCCccCcc-CcccccCCCCCCEEecCCCCCCCc
Q 022302 259 LSYNYYIHS-SLEGLANLTNLQVLDLSDNQNLTT 291 (299)
Q Consensus 259 L~~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~g~ 291 (299)
+++|.+++. ++..+..+++|++|++++|++++.
T Consensus 495 l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 495 MRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp EESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred ccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 999998765 344456789999999999998765
No 139
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.33 E-value=8.5e-12 Score=110.47 Aligned_cols=89 Identities=22% Similarity=0.188 Sum_probs=79.3
Q ss_pred cCCCCCccEEeCCC-CCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhc
Q 022302 122 FHPFEELQRLDLPG-NWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLA 200 (299)
Q Consensus 122 ~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 200 (299)
+..+++|++|+|++ |.+.+..+. .|..+++|++|+|++|++++..|..|.++++|++|+|++|++++ +|+..+.
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~ 101 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQ 101 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC-CCSTTTC
T ss_pred CCCCCCeeEEEccCCCCCCCcChh----HhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccce-eCHHHcc
Confidence 77889999999996 999999877 89999999999999999999888899999999999999999995 6665666
Q ss_pred CCCCCCEEECCCCcCCCC
Q 022302 201 NLRYLQVLDLSGNFNITS 218 (299)
Q Consensus 201 ~l~~L~~L~Ls~n~~~~~ 218 (299)
.++ |+.|++.+| .+.
T Consensus 102 ~~~-L~~l~l~~N--~~~ 116 (347)
T 2ifg_A 102 GLS-LQELVLSGN--PLH 116 (347)
T ss_dssp SCC-CCEEECCSS--CCC
T ss_pred cCC-ceEEEeeCC--Ccc
Confidence 665 999999999 544
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.30 E-value=1.2e-11 Score=108.85 Aligned_cols=157 Identities=14% Similarity=0.157 Sum_probs=124.3
Q ss_pred ccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCC-------C-------------------ccc
Q 022302 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFF-------N-------------------DSI 170 (299)
Q Consensus 117 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l-------~-------------------~~~ 170 (299)
+....|..+++|+++++++|.+..+.+. .|.++.++..+.+..+.. . +.+
T Consensus 115 I~~~aF~~~~~L~~l~l~~n~i~~i~~~----aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l 190 (329)
T 3sb4_A 115 IEDAAFKGCDNLKICQIRKKTAPNLLPE----ALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKL 190 (329)
T ss_dssp ECTTTTTTCTTCCEEEBCCSSCCEECTT----SSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCH
T ss_pred hhHHHhhcCcccceEEcCCCCccccchh----hhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcH
Confidence 4566899999999999999998877666 777777777776655210 0 011
Q ss_pred hHh---------------------------h-ccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccc
Q 022302 171 LPY---------------------------L-NTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLT 222 (299)
Q Consensus 171 p~~---------------------------l-~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~ 222 (299)
+.. + ..+++|++|++++|+++ .++...|.++.+|+.+++.+| . ..++
T Consensus 191 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n---i-~~I~ 265 (329)
T 3sb4_A 191 EDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN---L-KTIG 265 (329)
T ss_dssp HHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT---C-CEEC
T ss_pred HHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc---c-ceeh
Confidence 110 1 13789999999999988 588888999999999999998 2 2355
Q ss_pred hhhhccCCCCc-EEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEec
Q 022302 223 RLGLANLTNLK-KLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDL 283 (299)
Q Consensus 223 ~~~~~~l~~L~-~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l 283 (299)
...|.++++|+ .+++.+ +++.+. .|..+++|+.+++++|.++...+.+|.++++|+.+..
T Consensus 266 ~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 266 QRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred HHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 57899999999 999988 676654 5899999999999999999777789999999999863
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.28 E-value=4.6e-12 Score=119.92 Aligned_cols=159 Identities=14% Similarity=0.036 Sum_probs=100.2
Q ss_pred CCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCC----ccchHhhccCCCCcEEeCCCCcCCCcchhhh
Q 022302 123 HPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFN----DSILPYLNTLTSLTTLILSDNSIEGSRTKQG 198 (299)
Q Consensus 123 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~----~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~ 198 (299)
.++++|++|++++|.+++.....+......+++|++|++++|.++ +.++..+..+++|++|++++|.+.+ ++. .
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~-~ 238 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVG-F 238 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHH-H
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHH-H
Confidence 367788888888887765532222224566788888888888876 3345555678888888888887764 553 5
Q ss_pred hcCCCCCCEEECCCCcCC------------------------CCCccchhhhccCCCCcEEECCCCCCCCccc---ccCC
Q 022302 199 LANLRYLQVLDLSGNFNI------------------------TSGSLTRLGLANLTNLKKLDLGSCGITTIQG---LAKL 251 (299)
Q Consensus 199 ~~~l~~L~~L~Ls~n~~~------------------------~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---l~~l 251 (299)
+..+++|++|+++..... ..+.++ ..+..+++|++|++++|.+++... +..+
T Consensus 239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~ 317 (592)
T 3ogk_B 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMP-ILFPFAAQIRKLDLLYALLETEDHCTLIQKC 317 (592)
T ss_dssp HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGG-GGGGGGGGCCEEEETTCCCCHHHHHHHHTTC
T ss_pred HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHH-HHHhhcCCCcEEecCCCcCCHHHHHHHHHhC
Confidence 677777777777632101 112233 445566777777777777554321 4667
Q ss_pred CCCCEEeCCCCccCccCcccccCCCCCCEEecC
Q 022302 252 KNLEALDLSYNYYIHSSLEGLANLTNLQVLDLS 284 (299)
Q Consensus 252 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~ 284 (299)
++|++|+++++...+.++.....+++|++|+++
T Consensus 318 ~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 318 PNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred cCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence 777777777332222334444567778888887
No 142
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=5.5e-11 Score=105.22 Aligned_cols=104 Identities=18% Similarity=0.139 Sum_probs=87.5
Q ss_pred CEEECCCC-CCCccchHhhccCCCCcEEeCCC-CcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcE
Q 022302 157 KMLNLGDN-FFNDSILPYLNTLTSLTTLILSD-NSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKK 234 (299)
Q Consensus 157 ~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~ 234 (299)
..++.+++ .++. +|. +..+++|++|+|++ |++++ +++..|..+++|++|+|++| .+.+..+ ..|..+++|++
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~-~~~~~~~~l~~L~~L~l~~N--~l~~~~~-~~~~~l~~L~~ 84 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQH-LELRDLRGLGELRNLTIVKS--GLRFVAP-DAFHFTPRLSR 84 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCE-ECGGGSCSCCCCSEEECCSS--CCCEECT-TGGGSCSCCCE
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCC-cChhHhccccCCCEEECCCC--ccceeCH-HHhcCCcCCCE
Confidence 45688888 8885 777 99999999999996 99985 56558999999999999999 8887666 78899999999
Q ss_pred EECCCCCCCCccc--ccCCCCCCEEeCCCCccCcc
Q 022302 235 LDLGSCGITTIQG--LAKLKNLEALDLSYNYYIHS 267 (299)
Q Consensus 235 L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~ 267 (299)
|+|++|+|++.++ +..++ |+.|+|.+|.+...
T Consensus 85 L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 85 LNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp EECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred EeCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 9999999998764 44444 99999999998853
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.17 E-value=5.8e-12 Score=119.21 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=15.0
Q ss_pred CCCCcEEECCCCCCCCcc--c-ccCCCCCCEEeCCCC
Q 022302 229 LTNLKKLDLGSCGITTIQ--G-LAKLKNLEALDLSYN 262 (299)
Q Consensus 229 l~~L~~L~Ls~n~l~~~~--~-l~~l~~L~~L~L~~N 262 (299)
+++|++|++++|.+++.. . +..+++|++|++++|
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 344555555554433211 1 334455555555544
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.16 E-value=2.7e-12 Score=121.54 Aligned_cols=132 Identities=13% Similarity=0.109 Sum_probs=66.5
Q ss_pred CCCCCEEECCCCCCCccchHhhc-cCCCCcEEeCC--C----CcCCCc-----chhhhhcCCCCCCEEECCCCcCCCCCc
Q 022302 153 LKQLKMLNLGDNFFNDSILPYLN-TLTSLTTLILS--D----NSIEGS-----RTKQGLANLRYLQVLDLSGNFNITSGS 220 (299)
Q Consensus 153 l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~--~----n~l~~~-----~p~~~~~~l~~L~~L~Ls~n~~~~~~~ 220 (299)
+++|++|+++.|.+++..+..+. .+++|++|+++ + +.+++. ++ ..+..+++|++|+++++ +.+.
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~-~l~~~~~~L~~L~L~~~---l~~~ 446 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFG-AIVEHCKDLRRLSLSGL---LTDK 446 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHH-HHHHHCTTCCEEECCSS---CCHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHH-HHHhhCCCccEEeecCc---ccHH
Confidence 44555555544555444333333 35555555555 2 233310 11 12344555666666442 2222
Q ss_pred cchhhhc-cCCCCcEEECCCCCCCCcc--cc-cCCCCCCEEeCCCCccCccCcc-cccCCCCCCEEecCCCCCC
Q 022302 221 LTRLGLA-NLTNLKKLDLGSCGITTIQ--GL-AKLKNLEALDLSYNYYIHSSLE-GLANLTNLQVLDLSDNQNL 289 (299)
Q Consensus 221 ~~~~~~~-~l~~L~~L~Ls~n~l~~~~--~l-~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~l~~N~l~ 289 (299)
.. ..+. .+++|++|++++|.+++.. .+ ..+++|+.|++++|.+++..+. .+..+++|++|++++|+++
T Consensus 447 ~~-~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 447 VF-EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HH-HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HH-HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 22 1222 2666777777666665432 12 4566777777777776544333 3344667777777777663
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.13 E-value=9.4e-10 Score=99.42 Aligned_cols=162 Identities=12% Similarity=0.166 Sum_probs=106.7
Q ss_pred ccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCC--------
Q 022302 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDN-------- 188 (299)
Q Consensus 117 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n-------- 188 (299)
+....|.++++|+.+++.+|.++.+... .|. ..+|+.+.+..+ +.......|.++++|+.+++..+
T Consensus 171 I~~~aF~~c~~L~~l~l~~n~l~~I~~~----aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~a 244 (401)
T 4fdw_A 171 LKEDIFYYCYNLKKADLSKTKITKLPAS----TFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEA 244 (401)
T ss_dssp ECSSTTTTCTTCCEEECTTSCCSEECTT----TTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTT
T ss_pred ehHHHhhCcccCCeeecCCCcceEechh----hEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccc
Confidence 4456788888999999988877766554 444 466666666643 44444455666666666666543
Q ss_pred -------------cCCCcchhhhhcCCCCCCEEECCCCcCCCC----CccchhhhccCCCCcEEECCCCCCCCcc--ccc
Q 022302 189 -------------SIEGSRTKQGLANLRYLQVLDLSGNFNITS----GSLTRLGLANLTNLKKLDLGSCGITTIQ--GLA 249 (299)
Q Consensus 189 -------------~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~ 249 (299)
.++ .++...|..+++|+.+++.+| ... ..++...|..|++|+.+++.+ .++.+. .+.
T Consensus 245 F~~~~L~~i~lp~~i~-~I~~~aF~~c~~L~~l~l~~~--~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~ 320 (401)
T 4fdw_A 245 FRESGITTVKLPNGVT-NIASRAFYYCPELAEVTTYGS--TFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLG 320 (401)
T ss_dssp TTTCCCSEEEEETTCC-EECTTTTTTCTTCCEEEEESS--CCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTT
T ss_pred cccCCccEEEeCCCcc-EEChhHhhCCCCCCEEEeCCc--cccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhc
Confidence 122 244446777777777777776 322 124446777788888888873 355443 477
Q ss_pred CCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCCCC
Q 022302 250 KLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQNLT 290 (299)
Q Consensus 250 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g 290 (299)
.+++|+.+.+..| ++.....+|.++ +|+.+++.+|.+..
T Consensus 321 ~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 321 GNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp TCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred CCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 7888888888655 554556778888 89999998887654
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.97 E-value=3.3e-10 Score=100.88 Aligned_cols=164 Identities=16% Similarity=0.119 Sum_probs=104.5
Q ss_pred cCCCCCccEEeCCCCCCCC-----cchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchh
Q 022302 122 FHPFEELQRLDLPGNWFTG-----IYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTK 196 (299)
Q Consensus 122 ~~~l~~L~~L~L~~n~l~~-----~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 196 (299)
..++++|+.|.+..+.... .....+...+..+|+|+.|++++|.-. .++. + .+++|++|++..|.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 4567788888886653321 000112225677889999999877311 2232 3 378999999988887643322
Q ss_pred hhhc--CCCCCCEEECCCCcCCCCCc-----cchhhh--ccCCCCcEEECCCCCCCCcc-----cccCCCCCCEEeCCCC
Q 022302 197 QGLA--NLRYLQVLDLSGNFNITSGS-----LTRLGL--ANLTNLKKLDLGSCGITTIQ-----GLAKLKNLEALDLSYN 262 (299)
Q Consensus 197 ~~~~--~l~~L~~L~Ls~n~~~~~~~-----~~~~~~--~~l~~L~~L~Ls~n~l~~~~-----~l~~l~~L~~L~L~~N 262 (299)
.+. .+++|++|+|+.+.....+. +. ..+ ..+++|++|++.+|.+.+.. ....+++|++|+|+.|
T Consensus 212 -~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~-~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 212 -DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR-PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp -HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG-GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred -HHHHccCCCCcEEEEeccccccccchhHHHHH-HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 333 68999999885320011111 11 112 34789999999998886432 1235788999999999
Q ss_pred ccCcc----CcccccCCCCCCEEecCCCCCCC
Q 022302 263 YYIHS----SLEGLANLTNLQVLDLSDNQNLT 290 (299)
Q Consensus 263 ~l~~~----~p~~l~~l~~L~~L~l~~N~l~g 290 (299)
.+++. ++..+..+++|+.|++++|.++.
T Consensus 290 ~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 290 VLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 88864 34444567899999999998764
No 147
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.97 E-value=1.9e-10 Score=97.85 Aligned_cols=154 Identities=19% Similarity=0.169 Sum_probs=82.8
Q ss_pred CCCCCCceEecCCCCcEEEeeeCc----cccccccCC-------------CCccccccccccCCCCCccE--EeCCCCCC
Q 022302 78 CCDDWEGVKCNATTRRVMQLSLNE----TIKFNYSSG-------------SGSALLLNMSLFHPFEELQR--LDLPGNWF 138 (299)
Q Consensus 78 ~c~~w~gv~C~~~~~~v~~l~l~~----~l~~~~~~~-------------~~~~~~~~~~~~~~l~~L~~--L~L~~n~l 138 (299)
.| .|.|+.|+....+|+.+.... ...+.+.++ ......++.+.+...+.|+. ++++.|..
T Consensus 77 l~-~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~ 155 (267)
T 3rw6_A 77 LK-AVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRR 155 (267)
T ss_dssp HH-HTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSH
T ss_pred HH-hcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHHHHHhccchhccccCHHHcCCCcchhhcCccccCCHH
Confidence 46 899999987555665443322 111111100 00111233444555555555 55566632
Q ss_pred CCcchhhhHHhhcCCCCCCEEECCCCCCCc--cchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCC
Q 022302 139 TGIYENRAYDSFGSLKQLKMLNLGDNFFND--SILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNI 216 (299)
Q Consensus 139 ~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~ 216 (299)
... +..+.-....+++|+.|+|++|.+++ .+|..+..+++|++|+|++|++.+.-....+..+ +|++|+|++| .
T Consensus 156 ~~~-~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~N--p 231 (267)
T 3rw6_A 156 SCM-AATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGN--S 231 (267)
T ss_dssp HHH-HHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTS--T
T ss_pred HHH-HHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCC--c
Confidence 211 11111122457788888888888876 3455666778888888888887753111123333 7778888877 5
Q ss_pred CCCccc------hhhhccCCCCcEEE
Q 022302 217 TSGSLT------RLGLANLTNLKKLD 236 (299)
Q Consensus 217 ~~~~~~------~~~~~~l~~L~~L~ 236 (299)
+.+.+| ...+..+++|+.||
T Consensus 232 l~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 232 LCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CccccCcchhHHHHHHHHCcccCeEC
Confidence 554333 12355666666665
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.93 E-value=2.2e-09 Score=86.42 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=57.6
Q ss_pred ccCCCCCccEEeCCCC-CCCCcchhhhHHhhcCCCCCCEEECCCCCCCccc----hHhhccCCCCcEEeCCCCcCCCcch
Q 022302 121 LFHPFEELQRLDLPGN-WFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSI----LPYLNTLTSLTTLILSDNSIEGSRT 195 (299)
Q Consensus 121 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~~p 195 (299)
.+...+.|++|+|++| .+.......+...+...++|++|+|++|.+.... ...+...++|++|+|++|.+.....
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4556677777888777 7766555555556677777777777777776432 3334455677777777777663211
Q ss_pred ---hhhhcCCCCCCEEEC--CCC
Q 022302 196 ---KQGLANLRYLQVLDL--SGN 213 (299)
Q Consensus 196 ---~~~~~~l~~L~~L~L--s~n 213 (299)
...+...++|++|++ ++|
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N 133 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQ 133 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSS
T ss_pred HHHHHHHHhCCCceEEEecCCCC
Confidence 113444556666666 555
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.92 E-value=1.8e-08 Score=90.98 Aligned_cols=158 Identities=12% Similarity=0.118 Sum_probs=105.3
Q ss_pred ccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhh
Q 022302 119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQG 198 (299)
Q Consensus 119 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~ 198 (299)
...|.+ .+|+.+.+.. .+..+.+. +|.++++|+.++++.|.++......|. +.+|+.+.+..+ +. .++...
T Consensus 151 ~~aF~~-~~L~~i~lp~-~l~~I~~~----aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~a 221 (401)
T 4fdw_A 151 DMAFFN-STVQEIVFPS-TLEQLKED----IFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQA 221 (401)
T ss_dssp TTTTTT-CCCCEEECCT-TCCEECSS----TTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTT
T ss_pred HHhcCC-CCceEEEeCC-CccEehHH----HhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhH
Confidence 344555 3577777764 55555554 788888888888888888755555555 578888888754 44 466667
Q ss_pred hcCCCCCCEEECCCCcCC-----C-------------CCccchhhhccCCCCcEEECCCCCCC-----Cc--ccccCCCC
Q 022302 199 LANLRYLQVLDLSGNFNI-----T-------------SGSLTRLGLANLTNLKKLDLGSCGIT-----TI--QGLAKLKN 253 (299)
Q Consensus 199 ~~~l~~L~~L~Ls~n~~~-----~-------------~~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~--~~l~~l~~ 253 (299)
|.++++|+.+++..+-.. + ...++...|.+|++|+.+++.+|.+. .+ ..+..+++
T Consensus 222 F~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~ 301 (401)
T 4fdw_A 222 FLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK 301 (401)
T ss_dssp TTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT
T ss_pred hhCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc
Confidence 888889999988765100 0 01223356677777888877776654 11 13777778
Q ss_pred CCEEeCCCCccCccCcccccCCCCCCEEecCCC
Q 022302 254 LEALDLSYNYYIHSSLEGLANLTNLQVLDLSDN 286 (299)
Q Consensus 254 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N 286 (299)
|+.+++.+ .++.....+|.++++|+.+.+..|
T Consensus 302 L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 302 LARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp CCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred CCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence 88888874 366455567777888888888554
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.78 E-value=2.4e-09 Score=95.33 Aligned_cols=154 Identities=19% Similarity=0.221 Sum_probs=107.6
Q ss_pred ccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhc--cCCCCcEEeCCC--CcCCCc---
Q 022302 121 LFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLN--TLTSLTTLILSD--NSIEGS--- 193 (299)
Q Consensus 121 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~L~~--n~l~~~--- 193 (299)
.+..+++|+.|++++|.-. ..+ .+ .+++|++|++..+.++......+. .+++|++|+|+. |...+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~-----~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIG-----KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCC-----SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred HHhcCCCCcEEEEeCCCCc-eec-----cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 4567899999999887311 122 23 378999999999988765555555 789999999863 222221
Q ss_pred --chhhhh--cCCCCCCEEECCCCcCCCCCccchhhh---ccCCCCcEEECCCCCCCCcc------cccCCCCCCEEeCC
Q 022302 194 --RTKQGL--ANLRYLQVLDLSGNFNITSGSLTRLGL---ANLTNLKKLDLGSCGITTIQ------GLAKLKNLEALDLS 260 (299)
Q Consensus 194 --~p~~~~--~~l~~L~~L~Ls~n~~~~~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~------~l~~l~~L~~L~L~ 260 (299)
+.. .+ ..+++|++|++.+| ...+... ..+ ..+++|++|+|+.|.+++.. .+..+++|+.|+++
T Consensus 240 ~~l~~-~l~~~~~p~Lr~L~L~~~--~i~~~~~-~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 240 NVFRP-LFSKDRFPNLKWLGIVDA--EEQNVVV-EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp GGTGG-GSCTTTCTTCCEEEEESC--TTHHHHH-HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred HHHHH-HHhcCCCCCcCEEeCCCC--CCchHHH-HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECC
Confidence 111 22 35799999999998 5543322 222 35789999999999988642 24567999999999
Q ss_pred CCccCccCcccccC-CCCCCEEecCCCC
Q 022302 261 YNYYIHSSLEGLAN-LTNLQVLDLSDNQ 287 (299)
Q Consensus 261 ~N~l~~~~p~~l~~-l~~L~~L~l~~N~ 287 (299)
+|.++...-..+.. + ...++++.++
T Consensus 316 ~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 316 YNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 99988655555543 3 4668888886
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.76 E-value=1.5e-08 Score=81.60 Aligned_cols=118 Identities=19% Similarity=0.101 Sum_probs=71.7
Q ss_pred hhHHhhcCCCCCCEEECCCC-CCCcc----chHhhccCCCCcEEeCCCCcCCCcch---hhhhcCCCCCCEEECCCCcCC
Q 022302 145 RAYDSFGSLKQLKMLNLGDN-FFNDS----ILPYLNTLTSLTTLILSDNSIEGSRT---KQGLANLRYLQVLDLSGNFNI 216 (299)
Q Consensus 145 ~~~~~l~~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p---~~~~~~l~~L~~L~Ls~n~~~ 216 (299)
.+...+...+.|++|+|++| .+... +...+...++|++|+|++|.+..... ...+...++|++|+|++| .
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N--~ 104 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN--F 104 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS--C
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC--c
Confidence 34446778888999999988 88653 33445567788888888888764211 113445567777777777 4
Q ss_pred CCCc----cchhhhccCCCCcEEEC--CCCCCCCcc------cccCCCCCCEEeCCCCccC
Q 022302 217 TSGS----LTRLGLANLTNLKKLDL--GSCGITTIQ------GLAKLKNLEALDLSYNYYI 265 (299)
Q Consensus 217 ~~~~----~~~~~~~~l~~L~~L~L--s~n~l~~~~------~l~~l~~L~~L~L~~N~l~ 265 (299)
+... +. ..+...++|++|++ ++|.+.... .+...++|++|+|++|.+.
T Consensus 105 i~~~g~~~l~-~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 105 ISGSGILALV-EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CCHHHHHHHH-HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCHHHHHHHH-HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3321 12 34455566666666 556665432 1334455666666666554
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.64 E-value=7.7e-09 Score=87.85 Aligned_cols=81 Identities=27% Similarity=0.231 Sum_probs=61.8
Q ss_pred cCCCCCCEEECCCCcCCCCC--ccchhhhccCCCCcEEECCCCCCCCcccccCCC--CCCEEeCCCCccCccCcc-----
Q 022302 200 ANLRYLQVLDLSGNFNITSG--SLTRLGLANLTNLKKLDLGSCGITTIQGLAKLK--NLEALDLSYNYYIHSSLE----- 270 (299)
Q Consensus 200 ~~l~~L~~L~Ls~n~~~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~--~L~~L~L~~N~l~~~~p~----- 270 (299)
.++++|+.|+|++| .+.+ .++ ..+..+++|+.|+|++|++++...+..++ +|++|+|++|.+.+.+|+
T Consensus 167 ~~l~~L~~L~Ls~N--~l~~l~~l~-~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNN--RLYRLDDMS-SIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTS--CCCCCGGGT-THHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCC--CCCCCccch-hHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 56788888888888 5555 444 55678889999999999888876555554 899999999999876652
Q ss_pred --cccCCCCCCEEec
Q 022302 271 --GLANLTNLQVLDL 283 (299)
Q Consensus 271 --~l~~l~~L~~L~l 283 (299)
.+..+++|+.||=
T Consensus 244 ~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 244 SAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHCTTCCEESS
T ss_pred HHHHHHCcccCeECC
Confidence 4678889988863
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.24 E-value=5.6e-07 Score=71.26 Aligned_cols=82 Identities=20% Similarity=0.242 Sum_probs=51.5
Q ss_pred CccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCC-CCccchHhhccC----CCCcEEeCCCCc-CCCcchhhhhc
Q 022302 127 ELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNF-FNDSILPYLNTL----TSLTTLILSDNS-IEGSRTKQGLA 200 (299)
Q Consensus 127 ~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~p~~~~~ 200 (299)
+|++||++++.++...-. .+..+++|++|+|++|. +++..-..++.+ ++|++|+|++|. +++..-. .+.
T Consensus 62 ~L~~LDLs~~~Itd~GL~----~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFD----HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALH 136 (176)
T ss_dssp CEEEEEEESCCCCGGGGG----GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGG
T ss_pred eEeEEeCcCCCccHHHHH----HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHh
Confidence 577777777766554333 55677777777777774 665555555553 367777777764 5543222 456
Q ss_pred CCCCCCEEECCCC
Q 022302 201 NLRYLQVLDLSGN 213 (299)
Q Consensus 201 ~l~~L~~L~Ls~n 213 (299)
.+++|++|+++++
T Consensus 137 ~~~~L~~L~L~~c 149 (176)
T 3e4g_A 137 HFRNLKYLFLSDL 149 (176)
T ss_dssp GCTTCCEEEEESC
T ss_pred cCCCCCEEECCCC
Confidence 6677777777766
No 154
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.10 E-value=1.5e-05 Score=64.26 Aligned_cols=120 Identities=11% Similarity=0.145 Sum_probs=79.7
Q ss_pred ccCCCCCccEEeCCCC-CCCCcchhhhHHhhcCCCCCCEEECCCCCCCcc----chHhhccCCCCcEEeCCCCcCCCcch
Q 022302 121 LFHPFEELQRLDLPGN-WFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDS----ILPYLNTLTSLTTLILSDNSIEGSRT 195 (299)
Q Consensus 121 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p 195 (299)
.+.+-+.|++|+|++| .+.......+++.+..-+.|+.|+|++|.+.+. +-+.+..-+.|++|+|++|.|....-
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3456678999999885 777665556777888888999999999998754 33445567889999999998874321
Q ss_pred h---hhhcCCCCCCEEECCCCcCCCCCc-----cchhhhccCCCCcEEECCCCC
Q 022302 196 K---QGLANLRYLQVLDLSGNFNITSGS-----LTRLGLANLTNLKKLDLGSCG 241 (299)
Q Consensus 196 ~---~~~~~l~~L~~L~Ls~n~~~~~~~-----~~~~~~~~l~~L~~L~Ls~n~ 241 (299)
. ..+..-+.|++|+|++|.....|. +. ..+..-+.|+.|+++.|.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia-~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM-MAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH-HHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH-HHHHhCCCcCeEeccCCC
Confidence 1 134455678888887652212221 22 344555667777766554
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.08 E-value=2.9e-06 Score=67.15 Aligned_cols=88 Identities=15% Similarity=0.168 Sum_probs=58.3
Q ss_pred CCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCc-CCCcchhhhhcCC----CCCCEEECCCCcCCCCCccchhhhcc
Q 022302 154 KQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNS-IEGSRTKQGLANL----RYLQVLDLSGNFNITSGSLTRLGLAN 228 (299)
Q Consensus 154 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~~l----~~L~~L~Ls~n~~~~~~~~~~~~~~~ 228 (299)
.+|++||++++.++...-..+..+++|++|+|++|. +++..- ..+..+ ++|++|++++|. ..+..-- ..+..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~-~ITD~Gl-~~L~~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCG-NVTDKGI-IALHH 137 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCT-TCCHHHH-HHGGG
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCC-cCCHHHH-HHHhc
Confidence 468889999888887666777888888888888885 554322 245553 368888888872 1222111 34566
Q ss_pred CCCCcEEECCCCC-CCC
Q 022302 229 LTNLKKLDLGSCG-ITT 244 (299)
Q Consensus 229 l~~L~~L~Ls~n~-l~~ 244 (299)
+++|++|++++|. +++
T Consensus 138 ~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CTTCCEEEEESCTTCCC
T ss_pred CCCCCEEECCCCCCCCc
Confidence 7777777777775 444
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.90 E-value=5.5e-05 Score=67.72 Aligned_cols=154 Identities=15% Similarity=0.172 Sum_probs=84.9
Q ss_pred cccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCC------
Q 022302 118 NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIE------ 191 (299)
Q Consensus 118 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~------ 191 (299)
...+|.++++|+++.+.. .++.+... +|.++++|+.+++..+ ++......+..+.+|+.+.+..+-..
T Consensus 63 g~~AF~~c~~L~~i~lp~-~i~~I~~~----aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF 136 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPS-TVREIGEF----AFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAF 136 (394)
T ss_dssp CTTTTTTCTTEEEEECCT-TCCEECTT----TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTT
T ss_pred HHHHhhCCCCceEEEeCC-CccCcchh----HhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceee
Confidence 345678888888888864 36655554 7888888888888654 44334456677777777665433110
Q ss_pred --------------CcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCc--ccccCCCCCC
Q 022302 192 --------------GSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTI--QGLAKLKNLE 255 (299)
Q Consensus 192 --------------~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~l~~l~~L~ 255 (299)
..+....|..+.+|+.+.+..+ .. .++...|..+.+|+.+++..+ ++.. ..+..+..|+
T Consensus 137 ~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~ 211 (394)
T 4fs7_A 137 KGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS--ME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLE 211 (394)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT--CC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCC
T ss_pred ecccccccccCccccccchhhhcccCCCcEEecCCc--cc--eeccccccCCCCceEEEcCCC-ceEeCchhhccccccc
Confidence 0111224555566666666544 11 233345556666666666544 2222 1355556666
Q ss_pred EEeCCCCccCccCcccccCCCCCCEEecC
Q 022302 256 ALDLSYNYYIHSSLEGLANLTNLQVLDLS 284 (299)
Q Consensus 256 ~L~L~~N~l~~~~p~~l~~l~~L~~L~l~ 284 (299)
.+.+..+... +.+......+|+.+.+.
T Consensus 212 ~i~~~~~~~~--i~~~~~~~~~l~~i~ip 238 (394)
T 4fs7_A 212 NMEFPNSLYY--LGDFALSKTGVKNIIIP 238 (394)
T ss_dssp BCCCCTTCCE--ECTTTTTTCCCCEEEEC
T ss_pred eeecCCCceE--eehhhcccCCCceEEEC
Confidence 6655544322 22333344566666554
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.88 E-value=0.0001 Score=65.97 Aligned_cols=113 Identities=16% Similarity=0.146 Sum_probs=71.7
Q ss_pred ccccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCC---------------------CCccchHhhc
Q 022302 117 LNMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNF---------------------FNDSILPYLN 175 (299)
Q Consensus 117 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~---------------------l~~~~p~~l~ 175 (299)
+....|.++++|+.+++..+ ++.+... +|.+++.|+.+.+..+- ........|.
T Consensus 85 I~~~aF~~c~~L~~i~lp~~-l~~I~~~----aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~ 159 (394)
T 4fs7_A 85 IGEFAFENCSKLEIINIPDS-VKMIGRC----TFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVTVIGDEAFA 159 (394)
T ss_dssp ECTTTTTTCTTCCEECCCTT-CCEECTT----TTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCCEECTTTTT
T ss_pred cchhHhhCCCCCcEEEeCCC-ceEccch----hhcccccchhhcccCceeeecceeeecccccccccCccccccchhhhc
Confidence 44567889999999999754 5444443 66677776665543321 1111234567
Q ss_pred cCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCC
Q 022302 176 TLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSC 240 (299)
Q Consensus 176 ~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n 240 (299)
++.+|+.+.+..+.. .++...|..+.+|+.+++..+ . . .+....+..+..|+.+.+..+
T Consensus 160 ~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~--~-~-~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 160 TCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN--L-K-IIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp TCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT--C-C-EECTTTTTTCTTCCBCCCCTT
T ss_pred ccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC--c-e-EeCchhhccccccceeecCCC
Confidence 788899999876542 355567888888998888776 1 1 233355666667766666544
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.78 E-value=7.9e-05 Score=66.70 Aligned_cols=129 Identities=16% Similarity=0.192 Sum_probs=73.1
Q ss_pred hhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhcc
Q 022302 149 SFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLAN 228 (299)
Q Consensus 149 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~ 228 (299)
+|.++..|+.+.+..+.. ......+.++++|+.+.+.. .++ .++...|.++.+|+.+++..+ .. .+....|.+
T Consensus 260 aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~---v~-~I~~~aF~~ 332 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEG---IT-QILDDAFAG 332 (394)
T ss_dssp TTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTT---CC-EECTTTTTT
T ss_pred eeeecccccEEecccccc-eecCcccccccccccccCCC-ccc-ccCceeecCCCCcCEEEeCCc---cc-EehHhHhhC
Confidence 566677777777765433 23344566777777777753 333 355556777777777777654 11 233356777
Q ss_pred CCCCcEEECCCCCCCCc--ccccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCCCCC
Q 022302 229 LTNLKKLDLGSCGITTI--QGLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSDNQN 288 (299)
Q Consensus 229 l~~L~~L~Ls~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l 288 (299)
|.+|+.+.+..+ ++.+ ..|.++++|+.+++.++.... ..+..+.+|+.+.+..|.+
T Consensus 333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 777777777544 4433 247777777777777665431 3456667777776665543
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.75 E-value=9.9e-05 Score=66.06 Aligned_cols=134 Identities=12% Similarity=0.192 Sum_probs=93.9
Q ss_pred cccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhh
Q 022302 118 NMSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQ 197 (299)
Q Consensus 118 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 197 (299)
....|..+..|+.+.+..+. ..+... +|.+++.|+.+.+.. .++......|.++.+|+.+++..+ ++ .+...
T Consensus 257 ~~~aF~~c~~L~~i~lp~~~-~~I~~~----aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~ 328 (394)
T 4gt6_A 257 ETHAFDSCAYLASVKMPDSV-VSIGTG----AFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-QILDD 328 (394)
T ss_dssp CTTTTTTCSSCCEEECCTTC-CEECTT----TTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECTT
T ss_pred ccceeeecccccEEeccccc-ceecCc----ccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc-EehHh
Confidence 34578889999999997653 333333 788999999999964 455555668899999999999865 44 46666
Q ss_pred hhcCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcccccCCCCCCEEeCCCCcc
Q 022302 198 GLANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQGLAKLKNLEALDLSYNYY 264 (299)
Q Consensus 198 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~N~l 264 (299)
.|.++.+|+.+.+..+ .. .+...+|.+|.+|+.+++.++... ...+..+.+|+.+.+..|.+
T Consensus 329 aF~~C~~L~~i~ip~s---v~-~I~~~aF~~C~~L~~i~~~~~~~~-~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSS---VT-KIPESAFSNCTALNNIEYSGSRSQ-WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTTTCTTCCEEEECTT---CC-BCCGGGGTTCTTCCEEEESSCHHH-HHTCBCCCCC----------
T ss_pred HhhCCCCCCEEEECcc---cC-EEhHhHhhCCCCCCEEEECCceee-hhhhhccCCCCEEEeCCCCE
Confidence 8999999999999765 22 344478999999999999887532 23467778899888876654
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.72 E-value=0.00038 Score=61.73 Aligned_cols=128 Identities=16% Similarity=0.187 Sum_probs=74.6
Q ss_pred hcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhhcCCCCCCEEECCCCcCCCCCccchhhhccC
Q 022302 150 FGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGLANLRYLQVLDLSGNFNITSGSLTRLGLANL 229 (299)
Q Consensus 150 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l 229 (299)
+....+|+.+.+..+ +.......+..+..|+.+.+..+ ++ .+....|..+.+|+.+.+..+ .. .++...|..+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~---i~-~i~~~aF~~c 285 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK---VK-TVPYLLCSGC 285 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC---CS-EECTTTTTTC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc---ce-eccccccccc
Confidence 344555666655443 22233345556667777776554 33 344445666777777777554 11 2333566777
Q ss_pred CCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCCCCCEEecCC
Q 022302 230 TNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLTNLQVLDLSD 285 (299)
Q Consensus 230 ~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~ 285 (299)
.+|+.+.+.++.++.+. .+.++.+|+.+.+..+ ++..-..+|.++++|+.+.+..
T Consensus 286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 77777777776666443 3667777777777544 4433345666777777776643
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.62 E-value=0.00016 Score=58.14 Aligned_cols=95 Identities=12% Similarity=0.082 Sum_probs=54.5
Q ss_pred hHHhhcCCCCCCEEECCCC-CCCcc----chHhhccCCCCcEEeCCCCcCCCcch---hhhhcCCCCCCEEECCCCcCCC
Q 022302 146 AYDSFGSLKQLKMLNLGDN-FFNDS----ILPYLNTLTSLTTLILSDNSIEGSRT---KQGLANLRYLQVLDLSGNFNIT 217 (299)
Q Consensus 146 ~~~~l~~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p---~~~~~~l~~L~~L~Ls~n~~~~ 217 (299)
+...+..-+.|++|+|++| .+... +-+.+..-+.|++|+|++|++....- ...+..-+.|++|+|++|.+..
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 3335567788999999885 77543 33455566788888888888763211 1133445677777777773222
Q ss_pred CCccc-hhhhccCCCCcEEECCCC
Q 022302 218 SGSLT-RLGLANLTNLKKLDLGSC 240 (299)
Q Consensus 218 ~~~~~-~~~~~~l~~L~~L~Ls~n 240 (299)
.|... ...+..-+.|+.|+|++|
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCC
Confidence 22110 023334445666666543
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.62 E-value=0.00056 Score=60.63 Aligned_cols=144 Identities=15% Similarity=0.154 Sum_probs=100.6
Q ss_pred cccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCCCCcCCCcchhhhh
Q 022302 120 SLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNSIEGSRTKQGL 199 (299)
Q Consensus 120 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 199 (299)
..+..+..|+.+.+..+ +..+... .+..+..|+.+.+..+ ++......+.++.+|+.+.+..+ +. .++...|
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~----~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF 282 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDG----AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLC 282 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTT----TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTT
T ss_pred cccccccccceeeeccc-eeEEccc----cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccccc
Confidence 35566778888887654 4444333 7788899999998765 55445567888899999998654 43 3555678
Q ss_pred cCCCCCCEEECCCCcCCCCCccchhhhccCCCCcEEECCCCCCCCcc--cccCCCCCCEEeCCCCccCccCcccccCCC
Q 022302 200 ANLRYLQVLDLSGNFNITSGSLTRLGLANLTNLKKLDLGSCGITTIQ--GLAKLKNLEALDLSYNYYIHSSLEGLANLT 276 (299)
Q Consensus 200 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 276 (299)
..+.+|+.+.+.++ ... .++...|.+|.+|+.+.+..+ ++.+. .+.++++|+.+.+..+ ++..-..+|.+++
T Consensus 283 ~~c~~L~~i~l~~~--~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 283 SGCSNLTKVVMDNS--AIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TTCTTCCEEEECCT--TCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cccccccccccccc--ccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 89999999999877 333 344478889999999999754 54433 5888899999888654 4433344555554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.06 E-value=0.0014 Score=49.03 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=16.0
Q ss_pred CCcEEECCCCCCCCccc--ccCCCCCCEEeCCCCcc
Q 022302 231 NLKKLDLGSCGITTIQG--LAKLKNLEALDLSYNYY 264 (299)
Q Consensus 231 ~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~L~~N~l 264 (299)
+|++|+|++|+|+.++. +..+++|+.|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 34555555555544432 34444455555555444
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.55 E-value=0.0062 Score=45.42 Aligned_cols=34 Identities=26% Similarity=0.189 Sum_probs=14.4
Q ss_pred CCEEECCCCCCCccchHhhccCCCCcEEeCCCCc
Q 022302 156 LKMLNLGDNFFNDSILPYLNTLTSLTTLILSDNS 189 (299)
Q Consensus 156 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 189 (299)
|++|+|++|+|+...+..|..+++|++|+|++|.
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4444444444443333334444444444444443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=41.64 E-value=25 Score=24.13 Aligned_cols=39 Identities=23% Similarity=0.322 Sum_probs=17.3
Q ss_pred ccccCCCCCccEEeCCCCCCCCcchhhhHHhhcCCCCCCEEECC
Q 022302 119 MSLFHPFEELQRLDLPGNWFTGIYENRAYDSFGSLKQLKMLNLG 162 (299)
Q Consensus 119 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls 162 (299)
...|.+++.|+.+.+..+ ++.+... +|.++.+|+.+.+.
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~----aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDG----MFSGCTALEKLILT 51 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTT----SSTTCTTCCCEEEC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHH----HHhccCCccEEEEc
Confidence 344555555555555432 2222222 44455555544443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=30.97 E-value=41 Score=23.02 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=15.3
Q ss_pred hhcCCCCCCEEECCCCCCCccchHhhccCCCCcEEeCC
Q 022302 149 SFGSLKQLKMLNLGDNFFNDSILPYLNTLTSLTTLILS 186 (299)
Q Consensus 149 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 186 (299)
+|.++..|+.+.+-.+ ++......|.+|.+|+.+.+.
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 4444445544444332 121223334444444444443
Done!