BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022305
(299 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 192 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR--CFW----TKAI 245
LPFED+SFD I +++L P E K + +VLKPGG V + C++ KAI
Sbjct: 99 LPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAI 158
Query: 246 SIWT 249
W
Sbjct: 159 EAWN 162
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 14/86 (16%)
Query: 162 IVGMGMNEEELKR-------NPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP 214
+VG+ ++E+ +++ E++V D KL FED +FD + + S+ + +P
Sbjct: 63 VVGVDISEDXIRKAREYAKSRESNVEFIVGDAR---KLSFEDKTFDYVIFIDSIVHF-EP 118
Query: 215 IE---VFKEMCQVLKPGGLAIVSFSN 237
+E VFKE+ +VLKP G I F++
Sbjct: 119 LELNQVFKEVRRVLKPSGKFIXYFTD 144
>pdb|1VLM|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
pdb|1VLM|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
Length = 219
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 192 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 238
LP +D SFD V ++ ++ P KE ++LK GG IV +R
Sbjct: 96 LPLKDESFDFALXVTTICFVDDPERALKEAYRILKKGGYLIVGIVDR 142
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 192 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSF 235
LPFED SFD + + S+ + +E +VL+PGG +AI F
Sbjct: 123 LPFEDASFDAVWALESLHHXPDRGRALREXARVLRPGGTVAIADF 167
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Query: 156 GYKQDRIVGMGMNEEELKRNPVLTE-----YVVQDLNLNPKLPFEDNSFDVITNVVSVDY 210
GYK VG+ ++E +++ E ++ DL+ LPFE+ F+ I + S+++
Sbjct: 75 GYK---AVGVDISEVXIQKGKERGEGPDLSFIKGDLS---SLPFENEQFEAIXAINSLEW 128
Query: 211 LTKPIEVFKEMCQVLKPGGLAIVS 234
+P+ E+ +VLK G A ++
Sbjct: 129 TEEPLRALNEIKRVLKSDGYACIA 152
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
Length = 211
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 192 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTS 250
LPF SFDV+ +++++ V E +VL+PGG +V +A+S W +
Sbjct: 89 LPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGV------LEALSPWAA 141
>pdb|2O57|A Chain A, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|B Chain B, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|C Chain C, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|D Chain D, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
Length = 297
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234
++P EDNS+D I + + + ++VF+E +VLKP G+ ++
Sbjct: 143 EIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVXAIT 186
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 162 IVGMGMNEEELKRNPVL-----TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIE 216
++G+ ++E+ L R Y DL+ KL +SFD+ + +++ Y+
Sbjct: 69 VLGLDLSEKXLARARAAGPDTGITYERADLD---KLHLPQDSFDLAYSSLALHYVEDVAR 125
Query: 217 VFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWT 249
+F+ + Q L PGG + S + + A W
Sbjct: 126 LFRTVHQALSPGGHFVFSTEHPIYXAPARPGWA 158
>pdb|2P8J|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
pdb|2P8J|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
Length = 209
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 191 KLPFEDNSFDVITNVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSF 235
KLPF+D S + + ++ + K E E+ +VLKPGGLA ++F
Sbjct: 82 KLPFKDESXSFVYSYGTIFHXRKNDVKEAIDEIKRVLKPGGLACINF 128
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 192 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG 229
LPF D+SFD+IT + + + + +E+ +VLK G
Sbjct: 81 LPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDG 118
>pdb|1G8S|A Chain A, Methanococcus Jannaschii Fibrillarin Pre-Rrna Processing
Protein
Length = 230
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 11/57 (19%)
Query: 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAY 263
S+D P E+FKE ++L+ GG IV + + DHVM VG +
Sbjct: 182 SIDVTKDPKEIFKEQKEILEAGGFKIVD-----------EVDIEPFEKDHVMFVGIW 227
>pdb|1LNG|A Chain A, Crystal Structure Of The Srp19-7s.S Srp Rna Complex Of M.
Jannaschii
pdb|2V3C|A Chain A, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|B Chain B, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|3NDB|A Chain A, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 87
Score = 31.6 bits (70), Expect = 0.61, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 155 PGY---KQDRIVGMGMNEEELKRNPVLT--EYVVQDLNLNPKLPFEDNSFD----VITNV 205
P Y K+ R G + EE P L E ++ L L PK+ + D + I
Sbjct: 5 PSYIDKKKSRREGRKVPEELAIEKPSLKDIEKALKKLGLEPKI-YRDKRYPRQHWEICGC 63
Query: 206 VSVDYLTKPIEVFKEMCQVLK 226
V VDY +++ KE+C+++K
Sbjct: 64 VEVDYKGNKLQLLKEICKIIK 84
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 183 VQDLNLNPKL----------PFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG 229
+ D NLN ++ P EDN D+I + SV + F+E+ ++LK GG
Sbjct: 86 IADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGG 142
>pdb|1FBN|A Chain A, Crystal Structure Of A Fibrillarin Homologue From
Methanococcus Jannaschii, A Hyperthermophile, At 1.6 A
Length = 230
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVS 234
S+D P E+FKE ++L+ GG IV
Sbjct: 182 SIDVTKDPKEIFKEQKEILEAGGFKIVD 209
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFSNR 238
K+P DN+ D I + L++P++ +E+ +V KP LAI+ +
Sbjct: 99 KIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKE 147
>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
Length = 260
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 180 EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 233
EYV D + PF D F ++T ++ + P E +VLK GG ++
Sbjct: 88 EYVQGDAE---QXPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLL 138
>pdb|1OQY|A Chain A, Structure Of The Dna Repair Protein Hhr23a
pdb|1QZE|A Chain A, Hhr23a Protein Structure Based On Residual Dipolar
Coupling Data
Length = 368
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 142 FPPSNTPGVSHFPPGYKQDR 161
FPP+ T G+SH PP ++D+
Sbjct: 108 FPPAPTSGMSHPPPAAREDK 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,632,257
Number of Sequences: 62578
Number of extensions: 414633
Number of successful extensions: 943
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 927
Number of HSP's gapped (non-prelim): 27
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)