BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022305
(299 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7NZD3|UBIE_CHRVO Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Chromobacterium violaceum (strain ATCC 12472 / DSM
30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)
GN=ubiE PE=3 SV=2
Length = 244
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 174 RNPVLTEYVVQDLNLN--PKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-L 230
R+ +L E V+ ++L KLPF DN FD ++ + +T KEMC+VLKPGG L
Sbjct: 101 RDRLLDEGVILPVSLADAEKLPFPDNYFDAVSVAFGLRNMTHKDAALKEMCRVLKPGGKL 160
Query: 231 AIVSFSN 237
++ FS
Sbjct: 161 FVLEFSK 167
>sp|C1DCV3|UBIE_LARHH Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Laribacter hongkongensis (strain HLHK9) GN=ubiE PE=3
SV=1
Length = 244
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFSNRCFWT 242
KLPF D+ FD+++ + +T + KEMC+VLKPGG L ++ FS WT
Sbjct: 120 KLPFPDSHFDLVSVAFGLRNMTHKDQALKEMCRVLKPGGKLLVLEFSK--VWT 170
>sp|A6W0X8|BIOC_MARMS Malonyl-CoA O-methyltransferase BioC OS=Marinomonas sp. (strain
MWYL1) GN=bioC PE=3 SV=1
Length = 270
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 179 TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 238
T YV D +LP +D S D++ + +++ + P+++FKE+ +V+KPGG + S ++
Sbjct: 99 THYVCADAE---RLPLQDRSCDLVFSSLAIQWCLSPLDLFKELYRVIKPGGYVVFSTLSQ 155
Query: 239 CFWTKAISIWTSTGDADHV 257
+ W + +HV
Sbjct: 156 GSMPEISKAWFGLDNKEHV 174
>sp|P34666|COQ5_CAEEL 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
OS=Caenorhabditis elegans GN=coq-5 PE=3 SV=2
Length = 285
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 163 VGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMC 222
VG E+E P E+V + ++PFE N++D+ T + T P +V +E
Sbjct: 134 VGKKRAEKERDIQPSRAEWVCANAE---QMPFESNTYDLFTMSFGIRNCTHPEKVVREAF 190
Query: 223 QVLKPGG-LAIVSFS 236
+VLKPGG LAI+ FS
Sbjct: 191 RVLKPGGQLAILEFS 205
>sp|C1DHS2|UBIE_AZOVD Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303)
GN=ubiE PE=3 SV=1
Length = 253
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFS 236
KLPF DN FDVIT + +T+ + + M +VLKPGG L ++ FS
Sbjct: 128 KLPFPDNHFDVITIAFGLRNVTRKEDALRSMLRVLKPGGRLLVLEFS 174
>sp|Q1GC56|UBIE_RUEST Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Ruegeria sp. (strain TM1040) GN=ubiE PE=3 SV=1
Length = 250
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 192 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFS 236
LPF+DN+FDV T + +T+P E E +VLKPGG L ++ FS
Sbjct: 126 LPFKDNTFDVYTISFGIRNVTRPQEALNEAYRVLKPGGRLMVLEFS 171
>sp|A9M3A0|UBIE_NEIM0 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Neisseria meningitidis serogroup C (strain 053442)
GN=ubiE PE=3 SV=1
Length = 245
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 174 RNPVLTEYVVQDLNLN--PKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-L 230
R+ +L E ++ ++L KLPF DN F++++ + +T KEMC+VLKPGG L
Sbjct: 102 RDCLLNEGMILPVSLADAEKLPFPDNYFNLVSVAFGLRNMTHKDTALKEMCRVLKPGGTL 161
Query: 231 AIVSFS 236
++ FS
Sbjct: 162 LVLEFS 167
>sp|A9WRT1|UBIE_RENSM Demethylmenaquinone methyltransferase OS=Renibacterium salmoninarum
(strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589
/ NCIMB 2235) GN=ubiE PE=3 SV=1
Length = 237
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 165 MGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQV 224
+GM + +R P + +++ D LPF DNSFD +T + + +P + EM +V
Sbjct: 83 LGMLKVGKRRRPDI-DFIAGDAT---ALPFADNSFDAVTISFGLRNVNEPKKALAEMLRV 138
Query: 225 LKPGG-LAIVSFSNRCF 240
KPGG L + FS+ F
Sbjct: 139 TKPGGKLVVAEFSHPTF 155
>sp|Q81FQ6|UBIE_BACCR Demethylmenaquinone methyltransferase OS=Bacillus cereus (strain
ATCC 14579 / DSM 31) GN=ubiE PE=3 SV=1
Length = 237
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 158 KQDRIVGMGMNEEEL----KRNPVLTEYVVQDLNLNP-KLPFEDNSFDVITNVVSVDYLT 212
+Q ++VG+ +E L ++ L V+ L+ N +LPFEDN+FD +T + +
Sbjct: 71 EQGKVVGLDFSENMLSVGKQKVEALQLKQVELLHGNAMELPFEDNTFDYVTIGFGLRNVP 130
Query: 213 KPIEVFKEMCQVLKPGGLAI 232
+ V KEM +V+KPGG I
Sbjct: 131 DYMHVLKEMTRVVKPGGKVI 150
>sp|B7HHR7|UBIE_BACC4 Demethylmenaquinone methyltransferase OS=Bacillus cereus (strain
B4264) GN=ubiE PE=3 SV=1
Length = 237
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 158 KQDRIVGMGMNEEEL----KRNPVLTEYVVQDLNLNP-KLPFEDNSFDVITNVVSVDYLT 212
+Q ++VG+ +E L ++ L V+ L+ N +LPFEDN+FD +T + +
Sbjct: 71 EQGKVVGLDFSENMLSVGKQKVEALQLKQVELLHGNAMELPFEDNTFDYVTIGFGLRNVP 130
Query: 213 KPIEVFKEMCQVLKPGGLAI 232
+ V KEM +V+KPGG I
Sbjct: 131 DYMHVLKEMTRVVKPGGKVI 150
>sp|B7IP91|UBIE_BACC2 Demethylmenaquinone methyltransferase OS=Bacillus cereus (strain
G9842) GN=ubiE PE=3 SV=1
Length = 237
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 158 KQDRIVGMGMNEEEL----KRNPVLTEYVVQDLNLNP-KLPFEDNSFDVITNVVSVDYLT 212
+Q ++VG+ +E L ++ L V+ L+ N +LPFEDN+FD +T + +
Sbjct: 71 EQGKVVGLDFSENMLSVGKQKVEALQLKQVELLHGNAMELPFEDNTFDYVTIGFGLRNVP 130
Query: 213 KPIEVFKEMCQVLKPGGLAI 232
+ V KEM +V+KPGG I
Sbjct: 131 DYMHVLKEMTRVVKPGGKVI 150
>sp|Q16DL1|UBIE_ROSDO Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Roseobacter denitrificans (strain ATCC 33942 / OCh
114) GN=ubiE PE=3 SV=1
Length = 250
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 192 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFS 236
LPF DN+FDV T + +T+P E E +VL+PGG L ++ FS
Sbjct: 126 LPFADNTFDVYTISFGIRNVTRPQEALNEAFRVLRPGGRLMVLEFS 171
>sp|Q6HL42|UBIE_BACHK Demethylmenaquinone methyltransferase OS=Bacillus thuringiensis
subsp. konkukian (strain 97-27) GN=ubiE PE=3 SV=1
Length = 237
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 158 KQDRIVGMGMNEEEL----KRNPVLTEYVVQDLNLNP-KLPFEDNSFDVITNVVSVDYLT 212
+Q ++VG+ +E L ++ L V+ L+ N +LPFEDN+FD +T + +
Sbjct: 71 EQGKVVGLDFSENMLSVGKQKVEALQLKQVELLHGNAMELPFEDNTFDYVTIGFGLRNVP 130
Query: 213 KPIEVFKEMCQVLKPGGLAI 232
+ V KEM +V+KPGG I
Sbjct: 131 DYMHVLKEMTRVVKPGGKVI 150
>sp|Q63DL9|UBIE_BACCZ Demethylmenaquinone methyltransferase OS=Bacillus cereus (strain ZK
/ E33L) GN=ubiE PE=3 SV=1
Length = 237
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 158 KQDRIVGMGMNEEEL----KRNPVLTEYVVQDLNLNP-KLPFEDNSFDVITNVVSVDYLT 212
+Q ++VG+ +E L ++ L V+ L+ N +LPFEDN+FD +T + +
Sbjct: 71 EQGKVVGLDFSENMLSVGKQKVEALQLKQVELLHGNAMELPFEDNTFDYVTIGFGLRNVP 130
Query: 213 KPIEVFKEMCQVLKPGGLAI 232
+ V KEM +V+KPGG I
Sbjct: 131 DYMHVLKEMTRVVKPGGKVI 150
>sp|B9IVN5|UBIE_BACCQ Demethylmenaquinone methyltransferase OS=Bacillus cereus (strain
Q1) GN=ubiE PE=3 SV=1
Length = 237
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 158 KQDRIVGMGMNEEEL----KRNPVLTEYVVQDLNLNP-KLPFEDNSFDVITNVVSVDYLT 212
+Q ++VG+ +E L ++ L V+ L+ N +LPFEDN+FD +T + +
Sbjct: 71 EQGKVVGLDFSENMLSVGKQKVEALQLKQVELLHGNAMELPFEDNTFDYVTIGFGLRNVP 130
Query: 213 KPIEVFKEMCQVLKPGGLAI 232
+ V KEM +V+KPGG I
Sbjct: 131 DYMHVLKEMTRVVKPGGKVI 150
>sp|B7HL23|UBIE_BACC7 Demethylmenaquinone methyltransferase OS=Bacillus cereus (strain
AH187) GN=ubiE PE=3 SV=1
Length = 237
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 158 KQDRIVGMGMNEEEL----KRNPVLTEYVVQDLNLNP-KLPFEDNSFDVITNVVSVDYLT 212
+Q ++VG+ +E L ++ L V+ L+ N +LPFEDN+FD +T + +
Sbjct: 71 EQGKVVGLDFSENMLSVGKQKVEALQLKQVELLHGNAMELPFEDNTFDYVTIGFGLRNVP 130
Query: 213 KPIEVFKEMCQVLKPGGLAI 232
+ V KEM +V+KPGG I
Sbjct: 131 DYMHVLKEMTRVVKPGGKVI 150
>sp|C1EN10|UBIE_BACC3 Demethylmenaquinone methyltransferase OS=Bacillus cereus (strain
03BB102) GN=ubiE PE=3 SV=1
Length = 237
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 158 KQDRIVGMGMNEEEL----KRNPVLTEYVVQDLNLNP-KLPFEDNSFDVITNVVSVDYLT 212
+Q ++VG+ +E L ++ L V+ L+ N +LPFEDN+FD +T + +
Sbjct: 71 EQGKVVGLDFSENMLSVGKQKVEALQLKQVELLHGNAMELPFEDNTFDYVTIGFGLRNVP 130
Query: 213 KPIEVFKEMCQVLKPGGLAI 232
+ V KEM +V+KPGG I
Sbjct: 131 DYMHVLKEMTRVVKPGGKVI 150
>sp|B7JGZ8|UBIE_BACC0 Demethylmenaquinone methyltransferase OS=Bacillus cereus (strain
AH820) GN=ubiE PE=3 SV=1
Length = 237
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 158 KQDRIVGMGMNEEEL----KRNPVLTEYVVQDLNLNP-KLPFEDNSFDVITNVVSVDYLT 212
+Q ++VG+ +E L ++ L V+ L+ N +LPFEDN+FD +T + +
Sbjct: 71 EQGKVVGLDFSENMLSVGKQKVEALQLKQVELLHGNAMELPFEDNTFDYVTIGFGLRNVP 130
Query: 213 KPIEVFKEMCQVLKPGGLAI 232
+ V KEM +V+KPGG I
Sbjct: 131 DYMHVLKEMTRVVKPGGKVI 150
>sp|Q81SW0|UBIE_BACAN Demethylmenaquinone methyltransferase OS=Bacillus anthracis GN=ubiE
PE=3 SV=1
Length = 237
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 158 KQDRIVGMGMNEEEL----KRNPVLTEYVVQDLNLNP-KLPFEDNSFDVITNVVSVDYLT 212
+Q ++VG+ +E L ++ L V+ L+ N +LPFEDN+FD +T + +
Sbjct: 71 EQGKVVGLDFSENMLSVGKQKVEALQLKQVELLHGNAMELPFEDNTFDYVTIGFGLRNVP 130
Query: 213 KPIEVFKEMCQVLKPGGLAI 232
+ V KEM +V+KPGG I
Sbjct: 131 DYMHVLKEMTRVVKPGGKVI 150
>sp|C3L8S6|UBIE_BACAC Demethylmenaquinone methyltransferase OS=Bacillus anthracis (strain
CDC 684 / NRRL 3495) GN=ubiE PE=3 SV=1
Length = 237
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 158 KQDRIVGMGMNEEEL----KRNPVLTEYVVQDLNLNP-KLPFEDNSFDVITNVVSVDYLT 212
+Q ++VG+ +E L ++ L V+ L+ N +LPFEDN+FD +T + +
Sbjct: 71 EQGKVVGLDFSENMLSVGKQKVEALQLKQVELLHGNAMELPFEDNTFDYVTIGFGLRNVP 130
Query: 213 KPIEVFKEMCQVLKPGGLAI 232
+ V KEM +V+KPGG I
Sbjct: 131 DYMHVLKEMTRVVKPGGKVI 150
>sp|C3P5A0|UBIE_BACAA Demethylmenaquinone methyltransferase OS=Bacillus anthracis (strain
A0248) GN=ubiE PE=3 SV=1
Length = 237
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 158 KQDRIVGMGMNEEEL----KRNPVLTEYVVQDLNLNP-KLPFEDNSFDVITNVVSVDYLT 212
+Q ++VG+ +E L ++ L V+ L+ N +LPFEDN+FD +T + +
Sbjct: 71 EQGKVVGLDFSENMLSVGKQKVEALQLKQVELLHGNAMELPFEDNTFDYVTIGFGLRNVP 130
Query: 213 KPIEVFKEMCQVLKPGGLAI 232
+ V KEM +V+KPGG I
Sbjct: 131 DYMHVLKEMTRVVKPGGKVI 150
>sp|Q9TYP1|STRM1_CAEEL Sterol 4-C-methyltransferase strm-1 OS=Caenorhabditis elegans
GN=strm-1 PE=3 SV=2
Length = 334
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 30/43 (69%)
Query: 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 233
K+PFED++FDV + S+ Y+ +V KE+ +VLKPGG IV
Sbjct: 155 KMPFEDSTFDVAYAIYSLKYIPNLDKVMKEIQRVLKPGGKFIV 197
>sp|Q73AY2|UBIE_BACC1 Demethylmenaquinone methyltransferase OS=Bacillus cereus (strain
ATCC 10987) GN=ubiE PE=3 SV=1
Length = 237
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 158 KQDRIVGMGMNEEEL----KRNPVLTEYVVQDLNLNP-KLPFEDNSFDVITNVVSVDYLT 212
+Q ++VG+ +E L ++ L V+ L+ N +LPFEDN+FD +T + +
Sbjct: 71 EQGKVVGLDFSENMLSVGKQKVEALQLKQVELLHGNAMELPFEDNTFDYVTIGFGLRNVP 130
Query: 213 KPIEVFKEMCQVLKPGGLAI 232
+ V KEM +V+KPGG I
Sbjct: 131 DYMHVLKEMTRVVKPGGKVI 150
>sp|Q5QYG2|UBIE_IDILO Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM
15497 / L2-TR) GN=ubiE PE=3 SV=1
Length = 251
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 190 PKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFS 236
+LPF+DN+FDVIT + +T + + M +VLKPGG + I+ FS
Sbjct: 125 EELPFDDNTFDVITIAFGLRNVTDKDKALRSMLRVLKPGGRVLILEFS 172
>sp|Q1I3T0|UBIE_PSEE4 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Pseudomonas entomophila (strain L48) GN=ubiE PE=3
SV=1
Length = 256
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 161 RIVGMGMNEEELK--RNPVLTEYVVQDLNL----NPKLPFEDNSFDVITNVVSVDYLTKP 214
++V +NE LK R+ +L V ++ KLPF DN FD +T + +T
Sbjct: 95 QVVLADINESMLKVGRDRLLDRGVAGNIEFVQADAEKLPFPDNHFDCVTIAFGLRNVTHK 154
Query: 215 IEVFKEMCQVLKPGG-LAIVSFS 236
E + M +VLKPGG L ++ FS
Sbjct: 155 DEAIRSMLRVLKPGGRLLVLEFS 177
>sp|B1MHC3|UBIE_MYCA9 Demethylmenaquinone methyltransferase OS=Mycobacterium abscessus
(strain ATCC 19977 / DSM 44196) GN=ubiE PE=3 SV=1
Length = 227
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFS---NRCFWT 242
+LPF D+SFD +T + + +E +EM +V KPGG LA+ FS NR F T
Sbjct: 103 RLPFADHSFDAVTISFGLRNVVDHVEGLREMARVTKPGGRLAVCEFSTPVNRPFRT 158
>sp|Q9Z439|UBIE_PSEPU Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Pseudomonas putida GN=ubiE PE=3 SV=1
Length = 256
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 161 RIVGMGMNEEELK--RNPVLTEYVVQDLNL----NPKLPFEDNSFDVITNVVSVDYLTKP 214
++V +NE LK R+ +L V ++ KLPF DN FD +T + +T
Sbjct: 95 QVVLADINESMLKVGRDRLLDRGVAGNIEFVQADAEKLPFPDNHFDCVTIAFGLRNVTHK 154
Query: 215 IEVFKEMCQVLKPGG-LAIVSFS 236
E + M +VLKPGG L ++ FS
Sbjct: 155 DEAIRSMLRVLKPGGRLLVLEFS 177
>sp|B0KM36|UBIE_PSEPG Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Pseudomonas putida (strain GB-1) GN=ubiE PE=3 SV=1
Length = 256
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFS 236
KLPF DN FD +T + +T E + M +VLKPGG L I+ FS
Sbjct: 131 KLPFPDNHFDCVTIAFGLRNVTHKDEAIRSMLRVLKPGGRLLILEFS 177
>sp|B1MK43|Y4481_MYCA9 Uncharacterized methyltransferase MAB_4481 OS=Mycobacterium
abscessus (strain ATCC 19977 / DSM 44196) GN=MAB_4481
PE=3 SV=1
Length = 259
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 192 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236
LP DNS D+ + +++ +P + +EM +V +PGGLAI+S++
Sbjct: 119 LPLADNSVDICLSSNVAEHVPQPWRLGEEMLRVTRPGGLAILSYT 163
>sp|B1J2S8|UBIE_PSEPW Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Pseudomonas putida (strain W619) GN=ubiE PE=3 SV=1
Length = 256
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFS 236
KLPF DN FD +T + +T E + M +VLKPGG L I+ FS
Sbjct: 131 KLPFPDNHFDCVTIAFGLRNVTHKDEAIRSMLRVLKPGGRLLILEFS 177
>sp|A4XPM7|UBIE_PSEMY Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Pseudomonas mendocina (strain ymp) GN=ubiE PE=3 SV=1
Length = 256
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFS 236
KLPF DN FDV+T + +T + + M +VLKPGG L ++ FS
Sbjct: 131 KLPFPDNHFDVVTIAFGLRNVTHKEDALRSMLRVLKPGGRLLVLEFS 177
>sp|A4T3V1|Y427_MYCGI Uncharacterized methyltransferase Mflv_0427 OS=Mycobacterium gilvum
(strain PYR-GCK) GN=Mflv_0427 PE=3 SV=1
Length = 255
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 192 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTST 251
LPF D S D+ + +++ +P + +EM +V +PGGLA++S+ ++W
Sbjct: 115 LPFADGSVDICLSSNVAEHVAQPWRLGEEMLRVTRPGGLAVLSY----------TVWLGP 164
Query: 252 GDADHVMIVGAYFHYAGGYEPPQ 274
+ + HY GGY +
Sbjct: 165 FGGHEMGLS----HYLGGYRAAE 183
>sp|A1T1P0|Y241_MYCVP Uncharacterized methyltransferase Mvan_0241 OS=Mycobacterium
vanbaalenii (strain DSM 7251 / PYR-1) GN=Mvan_0241 PE=3
SV=1
Length = 255
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 192 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236
LPF D+S DV + +++ +P + EM +V +PGGLA++S++
Sbjct: 115 LPFADDSVDVCLSSNVAEHVAQPWRLGDEMLRVTRPGGLAVLSYT 159
>sp|A0QMC8|Y4945_MYCA1 Uncharacterized methyltransferase MAV_4945 OS=Mycobacterium avium
(strain 104) GN=MAV_4945 PE=3 SV=1
Length = 253
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 31/45 (68%)
Query: 192 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236
LPF D+S D+ + +++ +P ++ EM +V +PGGLA++S++
Sbjct: 113 LPFADDSVDICLSSNVAEHVPRPWQLGAEMLRVTRPGGLAVLSYT 157
>sp|B2HMZ9|Y473_MYCMM Uncharacterized methyltransferase MMAR_0473 OS=Mycobacterium
marinum (strain ATCC BAA-535 / M) GN=MMAR_0473 PE=3 SV=1
Length = 255
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 31/45 (68%)
Query: 192 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236
LPF D+S D+ + +++ +P ++ EM +V +PGGLA++S++
Sbjct: 115 LPFADDSVDICLSSNVAEHVPRPWQLGAEMLRVTRPGGLAVLSYT 159
>sp|Q73TQ5|Y3663_MYCPA Uncharacterized methyltransferase MAP_3663c OS=Mycobacterium
paratuberculosis (strain ATCC BAA-968 / K-10)
GN=MAP_3663c PE=3 SV=1
Length = 255
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 31/45 (68%)
Query: 192 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236
LPF D+S D+ + +++ +P ++ EM +V +PGGLA++S++
Sbjct: 115 LPFADDSVDICLSSNVAEHVPRPWQLGAEMLRVTRPGGLAVLSYT 159
>sp|Q9HUC0|UBIE_PSEAE Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C
/ PRS 101 / LMG 12228) GN=ubiE PE=3 SV=1
Length = 256
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFS 236
KLPF DN FD +T + +T E + M +VLKPGG L ++ FS
Sbjct: 131 KLPFPDNHFDCVTIAFGLRNVTHKDEAIRSMLRVLKPGGRLLVLEFS 177
>sp|Q02EV4|UBIE_PSEAB Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=ubiE
PE=3 SV=1
Length = 256
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFS 236
KLPF DN FD +T + +T E + M +VLKPGG L ++ FS
Sbjct: 131 KLPFPDNHFDCVTIAFGLRNVTHKDEAIRSMLRVLKPGGRLLVLEFS 177
>sp|B7V3F6|UBIE_PSEA8 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Pseudomonas aeruginosa (strain LESB58) GN=ubiE PE=3
SV=1
Length = 256
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFS 236
KLPF DN FD +T + +T E + M +VLKPGG L ++ FS
Sbjct: 131 KLPFPDNHFDCVTIAFGLRNVTHKDEAIRSMLRVLKPGGRLLVLEFS 177
>sp|A8FEK9|UBIE_BACP2 Demethylmenaquinone methyltransferase OS=Bacillus pumilus (strain
SAFR-032) GN=ubiE PE=3 SV=1
Length = 234
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 8/46 (17%)
Query: 191 KLPFEDNSFDVITNVVSV----DYLTKPIEVFKEMCQVLKPGGLAI 232
+LPFEDN+FD +T + DYLT V KEM +V+KPGG+ +
Sbjct: 109 ELPFEDNTFDYVTIGFGLRNVPDYLT----VLKEMTRVVKPGGMVV 150
>sp|A1R990|UBIE_ARTAT Demethylmenaquinone methyltransferase OS=Arthrobacter aurescens
(strain TC1) GN=ubiE PE=3 SV=1
Length = 253
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 165 MGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQV 224
+GM + +R P + +++ D LPF DNSFD T + + +P + +EM +V
Sbjct: 83 LGMLKVGKRRRPDI-DFIAGDAT---NLPFADNSFDASTISFGLRNVVEPRKALEEMLRV 138
Query: 225 LKPGG-LAIVSFSN 237
KPGG L I FS+
Sbjct: 139 TKPGGRLVIAEFSH 152
>sp|Q3KJC5|UBIE_PSEPF Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Pseudomonas fluorescens (strain Pf0-1) GN=ubiE PE=3
SV=1
Length = 256
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 15/107 (14%)
Query: 134 LTKYYSEVFPPSNTPGVSHFPPGY---KQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNP 190
LTK +S + P+ ++ +DR++ +G++ E+V D
Sbjct: 82 LTKKFSHLVGPTGQVVLADINESMLKVGRDRLLDVGVSGN--------VEFVQADAE--- 130
Query: 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFS 236
KLPF DN FD +T + +T + + M +VLKPGG L ++ FS
Sbjct: 131 KLPFPDNHFDCVTIAFGLRNVTHKEDALRSMLRVLKPGGRLLVLEFS 177
>sp|Q4ZZG3|UBIE_PSEU2 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Pseudomonas syringae pv. syringae (strain B728a)
GN=ubiE PE=3 SV=1
Length = 256
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 12/79 (15%)
Query: 159 QDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVF 218
+DR++ +G++ E+V D KLPF DN FD +T + +T +
Sbjct: 110 RDRLLDLGVSGN--------VEFVQADAE---KLPFPDNHFDCVTIAFGLRNVTHKEDAL 158
Query: 219 KEMCQVLKPGG-LAIVSFS 236
+ M +VLKPGG L ++ FS
Sbjct: 159 RSMLRVLKPGGRLLVLEFS 177
>sp|Q48PJ4|UBIE_PSE14 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Pseudomonas syringae pv. phaseolicola (strain 1448A /
Race 6) GN=ubiE PE=3 SV=1
Length = 256
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 12/79 (15%)
Query: 159 QDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVF 218
+DR++ +G++ E+V D KLPF DN FD +T + +T +
Sbjct: 110 RDRLLDLGVSGN--------VEFVQADAE---KLPFPDNHFDCVTIAFGLRNVTHKEDAL 158
Query: 219 KEMCQVLKPGG-LAIVSFS 236
+ M +VLKPGG L ++ FS
Sbjct: 159 RSMLRVLKPGGRLLVLEFS 177
>sp|Q87UZ2|UBIE_PSESM Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Pseudomonas syringae pv. tomato (strain DC3000)
GN=ubiE PE=3 SV=1
Length = 256
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 12/79 (15%)
Query: 159 QDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVF 218
+DR++ +G++ E+V D KLPF DN FD +T + +T +
Sbjct: 110 RDRLLDLGVSGN--------VEFVQADAE---KLPFPDNHFDCVTIAFGLRNVTHKEDAL 158
Query: 219 KEMCQVLKPGG-LAIVSFS 236
+ M +VLKPGG L ++ FS
Sbjct: 159 RSMLRVLKPGGRLLVLEFS 177
>sp|A5TYU9|Y232_MYCTA Uncharacterized methyltransferase MRA_0232 OS=Mycobacterium
tuberculosis (strain ATCC 25177 / H37Ra) GN=MRA_0232
PE=3 SV=1
Length = 254
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 30/45 (66%)
Query: 192 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236
LPF D+S D+ + +++ +P ++ EM +V KPGGL ++S++
Sbjct: 115 LPFADDSVDICLSSNVAEHVPRPWQLGTEMLRVTKPGGLVVLSYT 159
>sp|P96406|Y224_MYCTU Uncharacterized methyltransferase Rv0224c/MT0234 OS=Mycobacterium
tuberculosis GN=Rv0224c PE=3 SV=2
Length = 254
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 30/45 (66%)
Query: 192 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236
LPF D+S D+ + +++ +P ++ EM +V KPGGL ++S++
Sbjct: 115 LPFADDSVDICLSSNVAEHVPRPWQLGTEMLRVTKPGGLVVLSYT 159
>sp|Q9JV83|UBIE_NEIMA Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Neisseria meningitidis serogroup A / serotype 4A
(strain Z2491) GN=ubiE PE=3 SV=1
Length = 245
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 174 RNPVLTEYVVQDLNLN--PKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-L 230
R+ +L E ++ ++L KLPF DN F++++ + +T KEM +VLKPGG L
Sbjct: 102 RDRLLNEGMILPVSLADAEKLPFPDNYFNLVSVAFGLRNMTHKDAALKEMYRVLKPGGTL 161
Query: 231 AIVSFS 236
++ FS
Sbjct: 162 LVLEFS 167
>sp|A4VGE5|UBIE_PSEU5 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Pseudomonas stutzeri (strain A1501) GN=ubiE PE=3 SV=1
Length = 256
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFS---NRCF 240
KLPF DN FDV+T + +T + M +VLKPGG L ++ FS N+ F
Sbjct: 131 KLPFPDNYFDVVTIAFGLRNVTHKEDAIASMLRVLKPGGRLLVLEFSKPTNQLF 184
>sp|C5BMZ8|BIOHC_TERTT Biotin biosynthesis bifunctional protein BioHC OS=Teredinibacter
turnerae (strain ATCC 39867 / T7901) GN=bioC PE=3 SV=1
Length = 570
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 192 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234
LPF D SFD + ++V + P+++F EM + LKPGG +S
Sbjct: 403 LPFVDESFDGCISSLTVQWSENPLQLFSEMYRALKPGGWFALS 445
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,828,335
Number of Sequences: 539616
Number of extensions: 5264931
Number of successful extensions: 11557
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 11114
Number of HSP's gapped (non-prelim): 506
length of query: 299
length of database: 191,569,459
effective HSP length: 117
effective length of query: 182
effective length of database: 128,434,387
effective search space: 23375058434
effective search space used: 23375058434
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)