Query 022305
Match_columns 299
No_of_seqs 363 out of 2521
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 02:32:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022305.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022305hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02396 hexaprenyldihydroxybe 99.8 1.3E-20 2.8E-25 174.7 8.2 156 139-298 133-318 (322)
2 COG2226 UbiE Methylase involve 99.8 2.2E-20 4.9E-25 165.3 7.8 99 137-238 51-160 (238)
3 PF01209 Ubie_methyltran: ubiE 99.8 1.1E-19 2.4E-24 161.6 7.0 99 136-237 46-156 (233)
4 COG2227 UbiG 2-polyprenyl-3-me 99.8 1.6E-19 3.6E-24 157.8 6.4 157 137-296 59-242 (243)
5 PLN02233 ubiquinone biosynthes 99.8 2.8E-18 6E-23 155.3 11.8 97 137-236 73-183 (261)
6 PF08241 Methyltransf_11: Meth 99.8 2.2E-19 4.9E-24 135.8 2.9 89 142-233 1-95 (95)
7 PLN02244 tocopherol O-methyltr 99.8 1.4E-17 3.1E-22 156.1 14.4 96 137-235 118-223 (340)
8 PRK10258 biotin biosynthesis p 99.7 6.2E-18 1.3E-22 151.8 8.9 125 123-250 27-155 (251)
9 PRK05785 hypothetical protein; 99.7 3.3E-18 7.2E-23 151.6 6.6 96 138-237 52-148 (226)
10 PF13489 Methyltransf_23: Meth 99.7 4E-18 8.7E-23 141.5 4.0 133 136-274 21-160 (161)
11 PLN02490 MPBQ/MSBQ methyltrans 99.7 1.2E-16 2.5E-21 149.0 12.5 155 137-298 113-283 (340)
12 PRK14103 trans-aconitate 2-met 99.7 8.4E-17 1.8E-21 144.9 8.3 104 130-237 21-128 (255)
13 TIGR02752 MenG_heptapren 2-hep 99.7 4E-16 8.8E-21 138.1 12.5 96 138-236 46-152 (231)
14 PTZ00098 phosphoethanolamine N 99.7 2E-16 4.4E-21 143.2 10.8 141 136-280 51-205 (263)
15 COG4976 Predicted methyltransf 99.7 6E-18 1.3E-22 146.1 0.6 198 91-297 75-287 (287)
16 PRK11036 putative S-adenosyl-L 99.7 2.9E-17 6.2E-22 148.0 4.9 107 130-239 37-153 (255)
17 KOG1540 Ubiquinone biosynthesi 99.7 1.2E-16 2.6E-21 140.2 8.1 107 129-238 91-218 (296)
18 TIGR02072 BioC biotin biosynth 99.6 7.5E-16 1.6E-20 136.1 10.4 103 139-244 36-144 (240)
19 PRK15068 tRNA mo(5)U34 methylt 99.6 2.4E-16 5.3E-21 146.6 7.6 138 138-280 123-277 (322)
20 PLN02336 phosphoethanolamine N 99.6 9.7E-16 2.1E-20 149.8 10.5 138 137-278 266-415 (475)
21 TIGR00452 methyltransferase, p 99.6 1.4E-15 3E-20 140.7 10.1 138 138-280 122-276 (314)
22 TIGR00740 methyltransferase, p 99.6 1.6E-15 3.5E-20 135.3 9.1 136 93-236 10-162 (239)
23 KOG1270 Methyltransferases [Co 99.6 8.3E-16 1.8E-20 135.6 6.8 137 139-282 91-254 (282)
24 KOG4300 Predicted methyltransf 99.6 2.7E-15 5.8E-20 127.9 9.1 137 139-279 78-234 (252)
25 PRK08317 hypothetical protein; 99.6 8.2E-15 1.8E-19 129.2 12.4 138 137-278 19-177 (241)
26 PRK01683 trans-aconitate 2-met 99.6 1.7E-15 3.6E-20 136.5 8.0 105 129-237 22-132 (258)
27 PF08242 Methyltransf_12: Meth 99.6 4.8E-16 1E-20 119.6 3.4 88 142-231 1-99 (99)
28 PF13847 Methyltransf_31: Meth 99.6 1.2E-15 2.6E-20 126.7 5.6 96 138-237 4-112 (152)
29 PRK11873 arsM arsenite S-adeno 99.6 1E-14 2.2E-19 132.5 11.4 138 137-278 77-231 (272)
30 PRK15451 tRNA cmo(5)U34 methyl 99.6 2.8E-15 6.2E-20 134.5 6.5 96 135-235 54-164 (247)
31 smart00138 MeTrc Methyltransfe 99.6 5E-15 1.1E-19 134.2 7.5 122 112-236 69-243 (264)
32 PF07021 MetW: Methionine bios 99.6 5.6E-15 1.2E-19 125.8 7.3 148 127-280 3-170 (193)
33 smart00828 PKS_MT Methyltransf 99.6 4.7E-15 1E-19 130.7 7.0 136 140-281 2-148 (224)
34 KOG1541 Predicted protein carb 99.6 5.3E-14 1.1E-18 121.2 12.1 176 94-293 10-202 (270)
35 PF12847 Methyltransf_18: Meth 99.5 2.7E-15 5.9E-20 117.5 2.1 94 139-235 3-111 (112)
36 PRK11088 rrmA 23S rRNA methylt 99.5 1.7E-14 3.7E-19 131.2 7.3 100 135-244 83-190 (272)
37 PRK11207 tellurite resistance 99.5 1.3E-14 2.9E-19 125.9 5.8 92 138-233 31-132 (197)
38 PF08003 Methyltransf_9: Prote 99.5 1.6E-14 3.6E-19 130.7 6.5 168 98-280 80-270 (315)
39 PLN02232 ubiquinone biosynthes 99.5 1.4E-13 3E-18 115.7 10.9 70 163-235 1-81 (160)
40 PRK00107 gidB 16S rRNA methylt 99.5 1.8E-13 4E-18 117.7 10.7 133 137-296 45-187 (187)
41 PF13649 Methyltransf_25: Meth 99.5 1.4E-14 3E-19 112.0 2.8 86 141-229 1-101 (101)
42 TIGR02081 metW methionine bios 99.5 2.9E-13 6.3E-18 117.0 11.1 137 137-279 13-169 (194)
43 PRK00216 ubiE ubiquinone/menaq 99.5 3.7E-13 8.1E-18 118.9 11.9 94 138-234 52-157 (239)
44 TIGR00477 tehB tellurite resis 99.5 3.8E-14 8.3E-19 122.8 5.0 92 138-233 31-131 (195)
45 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 7.1E-13 1.5E-17 116.0 12.1 95 137-234 39-142 (223)
46 COG4106 Tam Trans-aconitate me 99.4 7.1E-14 1.5E-18 120.1 4.7 99 136-238 29-132 (257)
47 PRK05134 bifunctional 3-demeth 99.4 1.7E-13 3.7E-18 121.5 7.4 155 138-296 49-232 (233)
48 PF05401 NodS: Nodulation prot 99.4 1.1E-13 2.4E-18 118.2 5.8 181 105-299 9-200 (201)
49 PRK12335 tellurite resistance 99.4 1.6E-13 3.5E-18 125.9 5.8 93 138-234 121-222 (287)
50 TIGR03587 Pse_Me-ase pseudamin 99.4 3.7E-13 7.9E-18 117.5 7.3 92 137-234 43-141 (204)
51 TIGR01983 UbiG ubiquinone bios 99.4 4.7E-13 1E-17 117.8 7.8 140 138-281 46-207 (224)
52 PRK00121 trmB tRNA (guanine-N( 99.4 1.9E-13 4.1E-18 119.1 4.9 114 131-246 34-167 (202)
53 PRK06922 hypothetical protein; 99.4 2.4E-13 5.3E-18 134.6 6.1 95 138-235 419-537 (677)
54 PLN03075 nicotianamine synthas 99.4 1.2E-12 2.6E-17 119.5 10.1 138 137-297 123-276 (296)
55 PRK04266 fibrillarin; Provisio 99.4 4.9E-12 1.1E-16 112.1 12.8 142 137-295 72-225 (226)
56 TIGR00138 gidB 16S rRNA methyl 99.4 2.6E-12 5.6E-17 110.1 10.6 91 138-236 43-143 (181)
57 PRK08287 cobalt-precorrin-6Y C 99.4 2.3E-12 4.9E-17 110.7 9.9 136 137-297 31-186 (187)
58 PRK06202 hypothetical protein; 99.4 1.2E-12 2.7E-17 116.2 8.1 95 137-236 60-167 (232)
59 TIGR02021 BchM-ChlM magnesium 99.3 2.1E-12 4.6E-17 113.6 7.6 90 138-233 56-156 (219)
60 PLN02336 phosphoethanolamine N 99.3 1.3E-12 2.9E-17 127.7 5.9 97 138-235 38-142 (475)
61 PF02353 CMAS: Mycolic acid cy 99.3 7.9E-13 1.7E-17 120.3 3.8 95 136-236 61-167 (273)
62 KOG2940 Predicted methyltransf 99.3 1.9E-12 4.1E-17 112.2 5.8 149 122-275 54-225 (325)
63 PRK11705 cyclopropane fatty ac 99.3 1.8E-12 3.8E-17 123.4 6.2 94 137-236 167-268 (383)
64 TIGR00091 tRNA (guanine-N(7)-) 99.3 1.5E-12 3.2E-17 112.8 5.2 104 138-244 17-141 (194)
65 TIGR03840 TMPT_Se_Te thiopurin 99.3 5.3E-12 1.1E-16 110.9 7.4 94 138-234 35-151 (213)
66 PRK11188 rrmJ 23S rRNA methylt 99.3 1.2E-11 2.7E-16 108.3 9.2 96 136-237 50-167 (209)
67 PRK00377 cbiT cobalt-precorrin 99.3 1.9E-11 4.2E-16 106.1 10.1 136 137-296 40-198 (198)
68 TIGR00537 hemK_rel_arch HemK-r 99.3 1.3E-11 2.8E-16 105.4 8.9 94 138-236 20-141 (179)
69 PTZ00146 fibrillarin; Provisio 99.3 3.7E-11 7.9E-16 109.4 12.0 147 122-280 113-274 (293)
70 KOG3010 Methyltransferase [Gen 99.3 3.8E-12 8.3E-17 111.2 5.3 94 139-233 35-135 (261)
71 TIGR02469 CbiT precorrin-6Y C5 99.3 6.8E-12 1.5E-16 99.5 6.3 93 138-236 20-123 (124)
72 PRK14967 putative methyltransf 99.3 2.7E-11 5.9E-16 107.0 10.5 97 138-238 37-162 (223)
73 COG2230 Cfa Cyclopropane fatty 99.3 1.1E-11 2.4E-16 112.0 7.6 136 136-278 71-224 (283)
74 PLN02585 magnesium protoporphy 99.2 2.5E-11 5.4E-16 112.5 9.0 92 138-237 145-251 (315)
75 PF03848 TehB: Tellurite resis 99.2 6.1E-12 1.3E-16 108.3 4.0 93 138-234 31-132 (192)
76 PRK07580 Mg-protoporphyrin IX 99.2 1.7E-11 3.6E-16 108.2 6.7 86 138-229 64-160 (230)
77 PRK13255 thiopurine S-methyltr 99.2 3.1E-11 6.7E-16 106.4 8.2 92 138-232 38-152 (218)
78 TIGR02716 C20_methyl_CrtF C-20 99.2 4.2E-11 9E-16 110.8 9.3 92 137-234 149-253 (306)
79 PRK13944 protein-L-isoaspartat 99.2 3.2E-11 6.9E-16 105.3 7.5 91 137-236 72-174 (205)
80 PRK00517 prmA ribosomal protei 99.2 4E-11 8.8E-16 107.8 6.6 131 136-296 118-250 (250)
81 TIGR01177 conserved hypothetic 99.2 7.9E-11 1.7E-15 110.1 7.8 100 137-239 182-298 (329)
82 TIGR03438 probable methyltrans 99.1 1.1E-10 2.3E-15 107.9 8.2 103 138-243 64-185 (301)
83 PRK09489 rsmC 16S ribosomal RN 99.1 7.3E-11 1.6E-15 110.7 7.2 103 130-237 188-305 (342)
84 PF05175 MTS: Methyltransferas 99.1 1E-10 2.2E-15 99.2 7.3 105 131-239 24-144 (170)
85 PRK07402 precorrin-6B methylas 99.1 2.4E-10 5.2E-15 98.9 9.7 96 137-238 40-145 (196)
86 KOG1975 mRNA cap methyltransfe 99.1 7.4E-11 1.6E-15 107.0 6.4 126 122-247 102-249 (389)
87 PRK14121 tRNA (guanine-N(7)-)- 99.1 8.6E-11 1.9E-15 111.1 6.8 104 138-244 123-244 (390)
88 TIGR03534 RF_mod_PrmC protein- 99.1 2.8E-10 6E-15 101.7 9.8 125 131-277 81-241 (251)
89 TIGR00406 prmA ribosomal prote 99.1 1.4E-10 3E-15 106.5 7.4 98 131-236 153-260 (288)
90 COG4123 Predicted O-methyltran 99.1 4.8E-10 1.1E-14 99.7 10.3 151 127-298 32-215 (248)
91 KOG2361 Predicted methyltransf 99.1 3.2E-10 6.8E-15 99.3 8.5 100 140-239 74-187 (264)
92 cd02440 AdoMet_MTases S-adenos 99.1 2.4E-10 5.1E-15 85.9 6.9 92 140-234 1-103 (107)
93 TIGR00438 rrmJ cell division p 99.1 8.2E-10 1.8E-14 94.9 11.1 95 137-237 32-148 (188)
94 PRK13942 protein-L-isoaspartat 99.1 2.3E-10 5E-15 100.4 7.1 98 130-236 68-177 (212)
95 PRK15001 SAM-dependent 23S rib 99.1 2.7E-10 5.8E-15 107.9 7.7 102 130-235 220-340 (378)
96 TIGR00080 pimt protein-L-isoas 99.1 2.3E-10 5E-15 100.5 6.4 92 136-236 76-178 (215)
97 PRK14968 putative methyltransf 99.1 3E-10 6.5E-15 96.9 6.7 96 137-236 23-149 (188)
98 PF13659 Methyltransf_26: Meth 99.0 2.7E-11 5.8E-16 95.6 -0.2 96 139-237 2-117 (117)
99 PF01739 CheR: CheR methyltran 99.0 3.6E-10 7.7E-15 98.0 6.1 120 114-236 3-176 (196)
100 PF05219 DREV: DREV methyltran 99.0 8E-10 1.7E-14 98.3 8.2 93 138-235 95-188 (265)
101 TIGR00536 hemK_fam HemK family 99.0 4.4E-10 9.4E-15 103.0 6.8 95 139-237 116-246 (284)
102 PF03291 Pox_MCEL: mRNA cappin 99.0 2.5E-10 5.5E-15 106.5 5.0 120 122-241 41-192 (331)
103 TIGR03533 L3_gln_methyl protei 99.0 6.5E-10 1.4E-14 101.9 6.0 96 138-237 122-253 (284)
104 PRK14901 16S rRNA methyltransf 99.0 3.5E-09 7.7E-14 102.6 10.6 145 137-297 252-434 (434)
105 PRK13256 thiopurine S-methyltr 99.0 1.4E-09 3E-14 96.2 7.0 94 138-234 44-162 (226)
106 PRK10611 chemotaxis methyltran 99.0 1.6E-09 3.4E-14 99.1 7.6 121 111-236 91-263 (287)
107 PRK10901 16S rRNA methyltransf 98.9 3.7E-09 7.9E-14 102.3 10.3 97 137-236 244-373 (427)
108 KOG2899 Predicted methyltransf 98.9 2.8E-09 6E-14 93.4 8.4 154 138-291 59-274 (288)
109 PRK00312 pcm protein-L-isoaspa 98.9 1.3E-09 2.8E-14 95.4 6.2 91 137-236 78-176 (212)
110 KOG1271 Methyltransferases [Ge 98.9 3E-10 6.6E-15 95.5 1.4 127 109-238 36-184 (227)
111 PRK11805 N5-glutamine S-adenos 98.9 1.1E-09 2.3E-14 101.5 4.7 95 139-237 135-265 (307)
112 TIGR00563 rsmB ribosomal RNA s 98.9 9.4E-09 2E-13 99.4 10.5 98 137-237 238-370 (426)
113 PRK14966 unknown domain/N5-glu 98.9 4E-09 8.7E-14 100.5 6.8 93 139-236 253-382 (423)
114 PRK09328 N5-glutamine S-adenos 98.9 1E-08 2.2E-13 92.9 9.1 96 137-236 108-239 (275)
115 COG2264 PrmA Ribosomal protein 98.8 1.3E-09 2.7E-14 99.6 2.6 100 129-234 154-262 (300)
116 PHA03411 putative methyltransf 98.8 6.1E-09 1.3E-13 94.1 6.8 96 138-237 65-185 (279)
117 PRK14904 16S rRNA methyltransf 98.8 1.7E-08 3.7E-13 98.1 10.4 96 138-237 251-379 (445)
118 PRK00811 spermidine synthase; 98.8 8.8E-09 1.9E-13 94.4 6.6 99 137-237 76-193 (283)
119 COG2242 CobL Precorrin-6B meth 98.8 3.9E-08 8.5E-13 83.6 9.8 101 131-238 27-138 (187)
120 COG1352 CheR Methylase of chem 98.8 3.4E-08 7.3E-13 89.4 10.1 122 112-236 67-242 (268)
121 PRK14902 16S rRNA methyltransf 98.8 3.1E-08 6.7E-13 96.3 9.8 96 137-236 250-380 (444)
122 TIGR03704 PrmC_rel_meth putati 98.8 1.4E-08 3.1E-13 91.4 6.9 97 139-237 88-218 (251)
123 PF06325 PrmA: Ribosomal prote 98.7 4.6E-09 1E-13 96.4 3.1 136 128-296 152-295 (295)
124 PRK14903 16S rRNA methyltransf 98.7 3.3E-08 7.1E-13 95.7 9.1 98 137-237 237-368 (431)
125 PRK04457 spermidine synthase; 98.7 7.9E-09 1.7E-13 93.7 4.3 98 137-236 66-178 (262)
126 PRK01581 speE spermidine synth 98.7 6.6E-08 1.4E-12 90.6 10.3 98 137-236 150-269 (374)
127 KOG1269 SAM-dependent methyltr 98.7 8.7E-09 1.9E-13 97.1 4.4 95 137-234 110-214 (364)
128 PRK01544 bifunctional N5-gluta 98.7 1.4E-08 2.9E-13 100.2 5.7 94 139-236 140-270 (506)
129 PRK03612 spermidine synthase; 98.7 2.4E-08 5.1E-13 98.9 6.0 99 136-237 296-417 (521)
130 PF06080 DUF938: Protein of un 98.7 2.2E-07 4.8E-12 80.4 10.7 148 140-295 28-204 (204)
131 PRK13943 protein-L-isoaspartat 98.7 1.7E-08 3.8E-13 93.9 4.1 90 137-235 80-180 (322)
132 PF05148 Methyltransf_8: Hypot 98.6 5.6E-08 1.2E-12 84.0 6.1 94 128-234 61-157 (219)
133 COG2519 GCD14 tRNA(1-methylade 98.6 3.2E-07 6.9E-12 81.5 10.9 137 136-298 93-254 (256)
134 KOG3045 Predicted RNA methylas 98.6 1.4E-07 3.1E-12 83.6 8.4 93 128-234 169-263 (325)
135 KOG1331 Predicted methyltransf 98.6 4.2E-08 9.1E-13 88.1 5.1 92 138-234 46-142 (293)
136 PF05724 TPMT: Thiopurine S-me 98.6 3.8E-08 8.2E-13 86.8 4.6 94 138-234 38-155 (218)
137 TIGR00417 speE spermidine synt 98.6 5.7E-08 1.2E-12 88.4 5.8 98 137-236 72-187 (270)
138 smart00650 rADc Ribosomal RNA 98.6 1.6E-07 3.4E-12 79.4 8.1 91 138-234 14-112 (169)
139 PHA03412 putative methyltransf 98.6 1.1E-07 2.3E-12 84.3 7.2 89 138-230 50-158 (241)
140 TIGR00446 nop2p NOL1/NOP2/sun 98.6 2.1E-07 4.6E-12 84.4 9.0 98 137-237 71-201 (264)
141 PF03141 Methyltransf_29: Puta 98.6 1.2E-08 2.7E-13 98.0 0.4 97 138-237 118-221 (506)
142 PF00891 Methyltransf_2: O-met 98.5 5.7E-08 1.2E-12 86.6 4.1 91 137-234 100-198 (241)
143 COG2890 HemK Methylase of poly 98.5 1.8E-07 4E-12 85.5 6.9 90 140-236 113-239 (280)
144 PLN02781 Probable caffeoyl-CoA 98.5 8.9E-08 1.9E-12 85.4 4.5 93 137-234 68-177 (234)
145 COG2813 RsmC 16S RNA G1207 met 98.5 6.1E-07 1.3E-11 81.8 9.5 102 130-236 150-267 (300)
146 PF05891 Methyltransf_PK: AdoM 98.5 2.7E-07 5.9E-12 80.4 6.8 144 138-289 56-213 (218)
147 PF02390 Methyltransf_4: Putat 98.5 1E-07 2.2E-12 82.6 4.2 102 140-244 20-142 (195)
148 COG2518 Pcm Protein-L-isoaspar 98.5 2E-07 4.2E-12 80.9 5.5 101 126-236 60-170 (209)
149 COG0500 SmtA SAM-dependent met 98.5 7.1E-07 1.5E-11 70.4 8.2 94 141-238 52-158 (257)
150 PRK11783 rlmL 23S rRNA m(2)G24 98.5 7.1E-08 1.5E-12 98.7 2.5 96 138-236 539-657 (702)
151 PRK13168 rumA 23S rRNA m(5)U19 98.4 2.2E-07 4.8E-12 90.3 5.3 107 126-236 285-401 (443)
152 PF01135 PCMT: Protein-L-isoas 98.4 6.7E-08 1.4E-12 84.6 1.5 100 128-236 62-173 (209)
153 KOG2904 Predicted methyltransf 98.4 7.2E-07 1.6E-11 79.8 7.6 97 139-237 150-287 (328)
154 COG1041 Predicted DNA modifica 98.4 8.7E-07 1.9E-11 82.2 7.9 97 137-236 197-311 (347)
155 PLN02366 spermidine synthase 98.4 5.1E-07 1.1E-11 83.6 6.2 96 136-235 90-206 (308)
156 PLN02672 methionine S-methyltr 98.4 5.6E-07 1.2E-11 94.9 7.1 95 139-237 120-280 (1082)
157 COG2521 Predicted archaeal met 98.4 6.1E-07 1.3E-11 78.6 5.6 138 137-296 134-287 (287)
158 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.3 4.6E-07 1E-11 81.4 4.2 145 139-295 58-256 (256)
159 PRK03522 rumB 23S rRNA methylu 98.3 8.4E-07 1.8E-11 82.5 5.7 95 138-238 174-277 (315)
160 PRK15128 23S rRNA m(5)C1962 me 98.3 4.5E-07 9.7E-12 86.8 3.8 94 138-234 221-338 (396)
161 TIGR00479 rumA 23S rRNA (uraci 98.2 1.5E-06 3.2E-11 84.3 4.3 96 138-236 293-397 (431)
162 PF11968 DUF3321: Putative met 98.1 8.7E-06 1.9E-10 70.9 8.0 90 139-239 53-153 (219)
163 KOG3420 Predicted RNA methylas 98.1 3.4E-06 7.3E-11 68.8 4.6 79 125-206 31-122 (185)
164 PRK10909 rsmD 16S rRNA m(2)G96 98.1 2.1E-06 4.6E-11 74.6 3.5 96 139-238 55-162 (199)
165 COG4627 Uncharacterized protei 98.1 9.8E-07 2.1E-11 72.5 1.1 57 190-246 39-97 (185)
166 PLN02476 O-methyltransferase 98.1 1.6E-06 3.5E-11 78.9 2.2 93 137-234 118-227 (278)
167 COG0220 Predicted S-adenosylme 98.1 2.8E-06 6.1E-11 75.2 3.6 102 139-243 50-172 (227)
168 COG4122 Predicted O-methyltran 98.1 2.7E-06 5.8E-11 74.8 3.3 93 137-234 59-165 (219)
169 PF10294 Methyltransf_16: Puta 98.0 2.2E-06 4.7E-11 72.9 2.2 98 138-238 46-159 (173)
170 TIGR02085 meth_trns_rumB 23S r 98.0 7.2E-06 1.6E-10 78.1 5.9 93 138-236 234-335 (374)
171 PF01596 Methyltransf_3: O-met 98.0 1.8E-06 4E-11 75.4 1.6 93 137-234 45-154 (205)
172 PF12147 Methyltransf_20: Puta 98.0 1.8E-05 3.8E-10 71.8 6.8 145 130-274 126-295 (311)
173 PRK01544 bifunctional N5-gluta 97.9 9.1E-06 2E-10 80.3 4.7 101 139-242 349-469 (506)
174 PLN02823 spermine synthase 97.9 1.3E-05 2.8E-10 75.2 5.2 97 137-236 103-221 (336)
175 PF07942 N2227: N2227-like pro 97.9 1.5E-05 3.2E-10 72.2 5.2 91 139-232 58-199 (270)
176 KOG3987 Uncharacterized conser 97.9 3.6E-06 7.8E-11 72.5 1.0 91 139-234 114-206 (288)
177 PRK14896 ksgA 16S ribosomal RN 97.9 7.9E-06 1.7E-10 73.9 3.3 67 137-208 29-101 (258)
178 KOG1499 Protein arginine N-met 97.9 5.7E-06 1.2E-10 76.6 2.3 90 139-232 62-164 (346)
179 PF08704 GCD14: tRNA methyltra 97.9 9.1E-06 2E-10 72.9 3.5 94 136-237 39-148 (247)
180 PRK00274 ksgA 16S ribosomal RN 97.9 9E-06 1.9E-10 74.1 3.4 67 137-206 42-113 (272)
181 PRK04338 N(2),N(2)-dimethylgua 97.9 1.4E-05 3.1E-10 76.2 4.5 91 139-236 59-159 (382)
182 PF01170 UPF0020: Putative RNA 97.9 5.1E-06 1.1E-10 71.1 1.2 98 137-238 28-153 (179)
183 COG2263 Predicted RNA methylas 97.8 9.2E-06 2E-10 69.2 2.5 61 139-205 47-115 (198)
184 KOG3191 Predicted N6-DNA-methy 97.8 0.00013 2.8E-09 61.8 9.2 105 138-246 44-179 (209)
185 KOG1661 Protein-L-isoaspartate 97.8 2.2E-05 4.8E-10 67.9 4.3 102 126-236 68-194 (237)
186 TIGR00478 tly hemolysin TlyA f 97.8 1.9E-05 4.2E-10 70.0 3.7 88 139-235 77-171 (228)
187 PF04672 Methyltransf_19: S-ad 97.8 5.1E-05 1.1E-09 68.4 6.3 160 137-296 68-267 (267)
188 PRK11933 yebU rRNA (cytosine-C 97.8 0.00011 2.4E-09 71.9 9.0 99 136-237 112-244 (470)
189 PLN02589 caffeoyl-CoA O-methyl 97.8 1.4E-05 3E-10 71.8 2.4 100 130-234 70-189 (247)
190 COG1092 Predicted SAM-dependen 97.7 1.7E-05 3.7E-10 75.5 2.2 98 138-237 218-338 (393)
191 PF05185 PRMT5: PRMT5 arginine 97.7 2.7E-05 5.9E-10 75.7 3.4 90 139-232 188-294 (448)
192 PF01564 Spermine_synth: Sperm 97.6 7.8E-05 1.7E-09 67.0 4.9 100 136-237 75-193 (246)
193 KOG3178 Hydroxyindole-O-methyl 97.6 0.00021 4.5E-09 66.4 7.5 89 138-234 178-274 (342)
194 PF02527 GidB: rRNA small subu 97.5 7E-05 1.5E-09 64.3 3.3 87 140-234 51-147 (184)
195 TIGR03439 methyl_EasF probable 97.5 0.00035 7.6E-09 65.0 8.1 106 139-244 78-206 (319)
196 TIGR00755 ksgA dimethyladenosi 97.5 0.00011 2.4E-09 66.1 4.7 66 137-207 29-103 (253)
197 TIGR00095 RNA methyltransferas 97.5 9.9E-05 2.2E-09 63.6 4.1 95 139-237 51-161 (189)
198 PRK04148 hypothetical protein; 97.5 8.4E-05 1.8E-09 60.4 3.1 88 139-234 18-108 (134)
199 PRK11727 23S rRNA mA1618 methy 97.5 6.4E-05 1.4E-09 70.0 2.8 69 138-206 115-197 (321)
200 PTZ00338 dimethyladenosine tra 97.5 5.2E-05 1.1E-09 69.9 1.8 65 137-206 36-109 (294)
201 COG3963 Phospholipid N-methylt 97.4 0.00024 5.3E-09 59.4 5.2 95 139-236 50-158 (194)
202 COG1889 NOP1 Fibrillarin-like 97.4 0.0034 7.3E-08 54.3 11.6 158 123-295 58-229 (231)
203 PRK00536 speE spermidine synth 97.4 0.00045 9.7E-09 62.5 6.6 90 136-237 71-173 (262)
204 PF06859 Bin3: Bicoid-interact 97.3 0.0003 6.5E-09 54.8 4.6 92 198-291 1-108 (110)
205 COG0144 Sun tRNA and rRNA cyto 97.3 0.0024 5.3E-08 60.4 11.7 99 136-237 155-290 (355)
206 PRK05031 tRNA (uracil-5-)-meth 97.3 0.00017 3.7E-09 68.4 3.7 91 139-237 208-322 (362)
207 COG0421 SpeE Spermidine syntha 97.3 0.0003 6.6E-09 64.3 4.9 95 138-237 77-192 (282)
208 PF09243 Rsm22: Mitochondrial 97.2 0.00027 5.8E-09 64.5 3.8 95 138-237 34-141 (274)
209 PF01269 Fibrillarin: Fibrilla 97.2 0.0018 3.9E-08 56.9 8.5 144 137-295 73-227 (229)
210 KOG2352 Predicted spermine/spe 97.2 0.00052 1.1E-08 66.3 5.7 93 140-235 51-162 (482)
211 TIGR02143 trmA_only tRNA (urac 97.2 0.00022 4.7E-09 67.5 3.0 90 139-236 199-312 (353)
212 PRK11783 rlmL 23S rRNA m(2)G24 97.2 0.00032 6.9E-09 72.1 4.4 73 161-238 258-350 (702)
213 KOG1500 Protein arginine N-met 97.2 0.00019 4E-09 66.2 2.3 92 139-235 179-282 (517)
214 PF02475 Met_10: Met-10+ like- 97.2 0.00018 3.8E-09 62.6 2.0 88 137-232 101-199 (200)
215 COG0357 GidB Predicted S-adeno 97.2 0.0022 4.9E-08 56.3 8.9 136 138-296 68-213 (215)
216 TIGR02987 met_A_Alw26 type II 97.2 0.00039 8.4E-09 69.2 4.3 90 116-205 6-119 (524)
217 PF01728 FtsJ: FtsJ-like methy 97.1 0.00013 2.8E-09 62.1 0.1 95 139-236 25-140 (181)
218 TIGR00308 TRM1 tRNA(guanine-26 97.1 0.00044 9.6E-09 65.8 3.5 90 139-234 46-146 (374)
219 PF02384 N6_Mtase: N-6 DNA Met 97.0 0.00059 1.3E-08 63.1 3.7 97 138-237 47-185 (311)
220 KOG1709 Guanidinoacetate methy 97.0 0.0011 2.3E-08 57.8 4.8 104 128-233 92-204 (271)
221 KOG1663 O-methyltransferase [S 96.9 0.00092 2E-08 58.7 4.1 91 139-234 75-182 (237)
222 PF10672 Methyltrans_SAM: S-ad 96.8 0.00019 4.1E-09 65.7 -1.1 96 138-236 124-239 (286)
223 COG0116 Predicted N6-adenine-s 96.8 0.0011 2.5E-08 62.5 3.5 72 161-236 256-345 (381)
224 PF03059 NAS: Nicotianamine sy 96.7 0.0012 2.6E-08 60.1 2.8 137 139-297 122-273 (276)
225 COG0293 FtsJ 23S rRNA methylas 96.6 0.011 2.4E-07 51.4 8.1 96 137-235 45-159 (205)
226 PF03602 Cons_hypoth95: Conser 96.5 0.00035 7.5E-09 60.0 -1.5 97 138-238 43-156 (183)
227 PF03141 Methyltransf_29: Puta 96.4 0.011 2.3E-07 57.7 7.8 93 137-234 365-466 (506)
228 KOG2730 Methylase [General fun 96.4 0.0022 4.8E-08 56.0 2.8 101 103-205 57-172 (263)
229 PF05958 tRNA_U5-meth_tr: tRNA 96.3 0.0014 2.9E-08 62.1 1.1 62 125-186 184-253 (352)
230 COG2520 Predicted methyltransf 96.3 0.008 1.7E-07 56.3 5.9 91 137-234 188-288 (341)
231 PF03269 DUF268: Caenorhabditi 96.2 0.0034 7.4E-08 52.3 2.6 76 196-279 61-147 (177)
232 PRK00050 16S rRNA m(4)C1402 me 96.2 0.0028 6E-08 58.4 2.3 75 128-205 9-97 (296)
233 COG4262 Predicted spermidine s 96.2 0.0079 1.7E-07 56.4 5.2 99 136-237 288-409 (508)
234 PF06962 rRNA_methylase: Putat 96.1 0.0093 2E-07 48.8 4.7 69 161-234 1-91 (140)
235 COG2265 TrmA SAM-dependent met 96.0 0.006 1.3E-07 59.2 3.8 109 122-236 277-397 (432)
236 KOG3201 Uncharacterized conser 95.9 0.0024 5.2E-08 53.3 0.4 99 139-238 31-143 (201)
237 PF09445 Methyltransf_15: RNA 95.9 0.00086 1.9E-08 56.4 -2.3 99 140-244 2-128 (163)
238 COG4076 Predicted RNA methylas 95.9 0.0098 2.1E-07 50.9 4.0 90 139-233 34-133 (252)
239 COG3897 Predicted methyltransf 95.9 0.0076 1.7E-07 51.9 3.2 97 138-241 80-185 (218)
240 PF08123 DOT1: Histone methyla 95.8 0.0019 4.1E-08 56.5 -0.6 95 137-236 42-158 (205)
241 KOG0820 Ribosomal RNA adenine 95.8 0.0044 9.5E-08 55.9 1.7 65 136-205 57-130 (315)
242 COG0030 KsgA Dimethyladenosine 95.7 0.0063 1.4E-07 54.9 2.2 66 138-206 31-103 (259)
243 KOG2798 Putative trehalase [Ca 95.3 0.0071 1.5E-07 55.5 1.3 92 139-232 152-293 (369)
244 COG0742 N6-adenine-specific me 95.3 0.015 3.2E-07 49.9 3.0 98 139-238 45-157 (187)
245 PRK11760 putative 23S rRNA C24 95.2 0.032 7E-07 52.2 5.1 90 137-234 211-304 (357)
246 PF13578 Methyltransf_24: Meth 95.0 0.0054 1.2E-07 47.2 -0.4 90 142-234 1-104 (106)
247 COG5459 Predicted rRNA methyla 94.7 0.04 8.6E-07 51.5 4.3 104 139-243 115-234 (484)
248 KOG2915 tRNA(1-methyladenosine 94.5 0.32 7E-06 44.1 9.5 94 135-236 103-210 (314)
249 PF01189 Nol1_Nop2_Fmu: NOL1/N 94.4 0.014 3E-07 53.5 0.5 98 136-236 84-220 (283)
250 KOG2187 tRNA uracil-5-methyltr 94.0 0.035 7.5E-07 54.2 2.4 48 139-186 385-440 (534)
251 PF04989 CmcI: Cephalosporin h 93.9 0.035 7.7E-07 48.4 2.2 133 137-271 32-184 (206)
252 COG1064 AdhP Zn-dependent alco 93.9 0.046 9.9E-07 51.3 3.0 87 137-234 166-258 (339)
253 COG1189 Predicted rRNA methyla 93.7 0.32 6.9E-06 43.3 7.6 152 139-297 81-244 (245)
254 PF07091 FmrO: Ribosomal RNA m 93.6 0.1 2.2E-06 46.7 4.5 108 128-240 93-213 (251)
255 PF13679 Methyltransf_32: Meth 93.6 0.093 2E-06 42.8 4.0 90 137-236 25-132 (141)
256 KOG1596 Fibrillarin and relate 93.6 1.2 2.5E-05 40.0 10.9 115 122-239 137-265 (317)
257 KOG2793 Putative N2,N2-dimethy 93.1 0.14 3E-06 46.0 4.6 102 137-238 86-202 (248)
258 KOG3115 Methyltransferase-like 93.1 0.34 7.4E-06 42.2 6.8 36 139-174 62-99 (249)
259 PF00398 RrnaAD: Ribosomal RNA 92.6 0.079 1.7E-06 47.9 2.3 85 137-227 30-123 (262)
260 KOG2920 Predicted methyltransf 92.5 0.054 1.2E-06 49.2 1.2 97 137-233 116-232 (282)
261 KOG4589 Cell division protein 92.4 1.9 4.2E-05 37.1 10.2 98 135-235 67-184 (232)
262 PRK09424 pntA NAD(P) transhydr 92.1 0.25 5.5E-06 49.0 5.4 96 138-233 165-283 (509)
263 TIGR01444 fkbM_fam methyltrans 92.0 0.068 1.5E-06 43.1 1.1 38 140-177 1-40 (143)
264 PF04816 DUF633: Family of unk 92.0 0.2 4.4E-06 43.7 4.1 114 141-279 1-126 (205)
265 PRK13699 putative methylase; P 91.7 0.13 2.8E-06 45.6 2.6 51 180-233 3-70 (227)
266 PRK11524 putative methyltransf 91.0 0.13 2.9E-06 47.0 2.0 53 180-235 10-80 (284)
267 COG4798 Predicted methyltransf 90.7 1.6 3.4E-05 37.9 8.0 96 137-236 48-167 (238)
268 KOG2539 Mitochondrial/chloropl 90.4 0.35 7.6E-06 46.9 4.3 97 138-234 201-314 (491)
269 COG1867 TRM1 N2,N2-dimethylgua 90.1 0.57 1.2E-05 44.3 5.3 115 115-235 28-154 (380)
270 PF05971 Methyltransf_10: Prot 89.9 0.098 2.1E-06 48.2 0.1 70 139-208 104-187 (299)
271 PF01555 N6_N4_Mtase: DNA meth 89.4 0.11 2.5E-06 44.8 0.2 50 127-176 181-230 (231)
272 PRK11524 putative methyltransf 88.4 0.2 4.3E-06 45.9 1.0 52 128-179 199-250 (284)
273 TIGR00561 pntA NAD(P) transhyd 87.0 0.41 8.9E-06 47.5 2.3 94 139-232 165-281 (511)
274 KOG1122 tRNA and rRNA cytosine 86.7 0.55 1.2E-05 45.0 2.9 98 136-237 240-373 (460)
275 cd08283 FDH_like_1 Glutathione 86.5 1.4 3E-05 41.8 5.7 96 138-234 185-305 (386)
276 TIGR00006 S-adenosyl-methyltra 85.1 0.66 1.4E-05 43.0 2.6 75 128-205 10-99 (305)
277 COG0286 HsdM Type I restrictio 84.8 2.3 5E-05 42.1 6.4 100 137-238 186-329 (489)
278 KOG1099 SAM-dependent methyltr 84.7 1.5 3.3E-05 38.9 4.5 93 138-234 42-162 (294)
279 PRK13699 putative methylase; P 84.6 0.41 9E-06 42.4 0.9 51 128-178 154-204 (227)
280 KOG2352 Predicted spermine/spe 84.5 3 6.5E-05 40.9 6.8 108 139-247 297-430 (482)
281 PF11899 DUF3419: Protein of u 84.4 1 2.2E-05 43.1 3.6 55 178-234 276-333 (380)
282 KOG1562 Spermidine synthase [A 83.6 2.1 4.6E-05 39.4 5.0 95 137-234 121-235 (337)
283 TIGR00027 mthyl_TIGR00027 meth 83.5 4.4 9.5E-05 36.6 7.2 107 130-238 74-200 (260)
284 KOG0822 Protein kinase inhibit 82.7 1.2 2.6E-05 44.0 3.3 90 139-232 369-475 (649)
285 PF14740 DUF4471: Domain of un 82.6 1.8 3.9E-05 39.8 4.2 36 196-236 220-255 (289)
286 PLN02668 indole-3-acetate carb 81.4 2.4 5.2E-05 40.6 4.8 46 193-238 157-240 (386)
287 PRK09880 L-idonate 5-dehydroge 81.2 1.5 3.3E-05 40.7 3.4 88 138-233 170-264 (343)
288 PF03492 Methyltransf_7: SAM d 81.2 1.5 3.2E-05 41.2 3.3 23 190-212 99-121 (334)
289 PF07757 AdoMet_MTase: Predict 80.7 0.54 1.2E-05 36.7 0.1 32 137-168 58-89 (112)
290 PHA01634 hypothetical protein 80.2 3.6 7.8E-05 33.3 4.6 66 138-203 29-97 (156)
291 PF04445 SAM_MT: Putative SAM- 79.8 0.36 7.8E-06 43.0 -1.2 69 139-209 77-162 (234)
292 PF11599 AviRa: RRNA methyltra 79.2 0.38 8.2E-06 42.2 -1.3 40 139-178 53-96 (246)
293 COG1063 Tdh Threonine dehydrog 78.3 2.6 5.7E-05 39.6 4.0 89 140-237 171-272 (350)
294 PF02005 TRM: N2,N2-dimethylgu 76.1 1.1 2.4E-05 42.8 0.8 93 139-237 51-156 (377)
295 COG3510 CmcI Cephalosporin hyd 74.7 7.6 0.00017 33.7 5.4 99 136-237 68-182 (237)
296 cd00315 Cyt_C5_DNA_methylase C 74.6 1.6 3.5E-05 39.7 1.4 64 140-206 2-70 (275)
297 COG4301 Uncharacterized conser 74.4 8.3 0.00018 34.8 5.7 97 138-236 79-194 (321)
298 cd08254 hydroxyacyl_CoA_DH 6-h 74.1 5.2 0.00011 36.5 4.7 88 138-233 166-261 (338)
299 PRK10742 putative methyltransf 73.7 2.4 5.3E-05 38.1 2.3 34 140-173 91-124 (250)
300 PF06016 Reovirus_L2: Reovirus 73.7 6.2 0.00013 43.0 5.6 97 138-237 823-929 (1289)
301 COG2384 Predicted SAM-dependen 71.8 15 0.00032 32.5 6.6 97 132-234 11-119 (226)
302 PF01555 N6_N4_Mtase: DNA meth 70.9 2 4.2E-05 36.9 1.0 29 210-238 31-59 (231)
303 COG3129 Predicted SAM-dependen 70.4 5.2 0.00011 35.7 3.5 89 121-209 59-164 (292)
304 KOG2671 Putative RNA methylase 70.3 4.9 0.00011 37.9 3.5 97 137-236 208-355 (421)
305 COG0686 Ald Alanine dehydrogen 69.9 3.6 7.9E-05 38.3 2.5 72 158-232 190-265 (371)
306 PF00107 ADH_zinc_N: Zinc-bind 69.7 9.9 0.00021 29.6 4.8 68 159-234 14-88 (130)
307 KOG0024 Sorbitol dehydrogenase 69.2 9.6 0.00021 35.7 5.1 92 137-234 169-272 (354)
308 COG1565 Uncharacterized conser 62.9 8 0.00017 36.6 3.4 62 116-177 48-127 (370)
309 cd05188 MDR Medium chain reduc 61.8 11 0.00025 32.7 4.1 90 137-234 134-231 (271)
310 PF10237 N6-adenineMlase: Prob 61.7 29 0.00063 29.1 6.3 95 137-236 25-124 (162)
311 KOG1269 SAM-dependent methyltr 61.2 17 0.00037 34.6 5.4 86 139-234 227-312 (364)
312 PF10354 DUF2431: Domain of un 60.7 16 0.00035 30.6 4.6 69 194-279 71-154 (166)
313 PF01795 Methyltransf_5: MraW 60.0 18 0.0004 33.6 5.2 50 128-177 10-62 (310)
314 KOG2198 tRNA cytosine-5-methyl 59.9 12 0.00026 35.6 3.9 101 137-237 155-298 (375)
315 COG5379 BtaA S-adenosylmethion 59.3 21 0.00046 33.0 5.3 74 173-249 303-386 (414)
316 TIGR01202 bchC 2-desacetyl-2-h 58.5 18 0.00038 33.1 4.9 81 138-233 145-229 (308)
317 KOG4058 Uncharacterized conser 58.4 7.1 0.00015 32.5 2.0 101 131-239 65-177 (199)
318 PF11312 DUF3115: Protein of u 57.8 5.4 0.00012 37.1 1.3 55 179-236 177-243 (315)
319 TIGR02822 adh_fam_2 zinc-bindi 55.5 19 0.00041 33.3 4.6 83 138-233 166-252 (329)
320 PF03514 GRAS: GRAS domain fam 55.2 29 0.00064 33.1 5.9 105 130-234 102-243 (374)
321 PF02636 Methyltransf_28: Puta 54.8 4 8.7E-05 36.5 -0.0 38 139-176 20-67 (252)
322 cd08237 ribitol-5-phosphate_DH 53.3 15 0.00033 34.1 3.6 86 138-233 164-254 (341)
323 PF01861 DUF43: Protein of unk 53.1 44 0.00096 29.9 6.3 96 139-239 46-153 (243)
324 cd08230 glucose_DH Glucose deh 53.1 12 0.00026 34.9 2.8 86 138-233 173-267 (355)
325 cd08232 idonate-5-DH L-idonate 51.6 13 0.00027 34.1 2.8 88 138-233 166-260 (339)
326 COG3315 O-Methyltransferase in 51.3 1.1E+02 0.0024 28.2 8.9 110 126-236 81-210 (297)
327 PHA03411 putative methyltransf 46.8 24 0.00052 32.3 3.7 52 120-171 187-242 (279)
328 COG0275 Predicted S-adenosylme 46.1 25 0.00054 32.6 3.6 26 212-237 221-247 (314)
329 cd00401 AdoHcyase S-adenosyl-L 42.7 27 0.00059 33.9 3.6 83 138-233 202-287 (413)
330 TIGR00006 S-adenosyl-methyltra 42.7 18 0.00039 33.6 2.3 25 213-237 218-243 (305)
331 TIGR03451 mycoS_dep_FDH mycoth 41.8 50 0.0011 30.7 5.2 87 138-233 177-274 (358)
332 KOG1253 tRNA methyltransferase 38.1 12 0.00025 37.0 0.3 94 138-235 110-216 (525)
333 cd01842 SGNH_hydrolase_like_5 37.4 78 0.0017 27.1 5.1 42 194-235 46-99 (183)
334 PF06460 NSP13: Coronavirus NS 36.8 41 0.00088 30.6 3.4 95 138-240 62-174 (299)
335 PLN03154 putative allyl alcoho 36.8 70 0.0015 29.7 5.3 88 138-233 159-256 (348)
336 PRK00050 16S rRNA m(4)C1402 me 36.4 26 0.00057 32.4 2.3 25 213-237 214-239 (296)
337 KOG2651 rRNA adenine N-6-methy 36.4 18 0.00039 34.7 1.2 40 138-177 154-194 (476)
338 PF02153 PDH: Prephenate dehyd 35.9 38 0.00083 30.3 3.3 68 158-236 10-79 (258)
339 KOG2078 tRNA modification enzy 35.7 31 0.00067 33.6 2.7 42 134-175 246-287 (495)
340 cd05213 NAD_bind_Glutamyl_tRNA 35.2 26 0.00056 32.4 2.1 97 138-242 178-279 (311)
341 PF01558 POR: Pyruvate ferredo 34.8 86 0.0019 25.9 5.1 39 191-237 49-88 (173)
342 cd08234 threonine_DH_like L-th 33.9 71 0.0015 28.9 4.8 87 138-233 160-255 (334)
343 PF08351 DUF1726: Domain of un 33.4 47 0.001 25.0 2.9 48 196-246 9-56 (92)
344 cd05278 FDH_like Formaldehyde 33.4 49 0.0011 30.2 3.6 86 139-233 169-265 (347)
345 cd08294 leukotriene_B4_DH_like 33.2 93 0.002 28.1 5.5 87 138-233 144-239 (329)
346 TIGR02825 B4_12hDH leukotriene 33.0 56 0.0012 29.7 3.9 89 138-233 139-235 (325)
347 PRK02318 mannitol-1-phosphate 32.8 3.3E+02 0.0072 25.8 9.3 134 140-280 2-163 (381)
348 cd08281 liver_ADH_like1 Zinc-d 32.5 72 0.0016 29.8 4.7 86 139-233 193-288 (371)
349 PF06557 DUF1122: Protein of u 32.0 3.1E+02 0.0066 23.2 7.6 75 215-296 66-140 (170)
350 TIGR00518 alaDH alanine dehydr 31.4 16 0.00035 34.7 0.1 94 139-232 168-264 (370)
351 cd08239 THR_DH_like L-threonin 30.7 65 0.0014 29.4 4.0 88 138-233 164-260 (339)
352 KOG2918 Carboxymethyl transfer 29.8 4.7E+02 0.01 24.5 9.3 142 136-278 86-278 (335)
353 COG1062 AdhC Zn-dependent alco 29.8 92 0.002 29.5 4.7 73 159-237 210-288 (366)
354 cd08293 PTGR2 Prostaglandin re 29.7 53 0.0012 30.0 3.2 86 139-233 156-252 (345)
355 TIGR00936 ahcY adenosylhomocys 29.3 48 0.001 32.1 2.9 83 138-234 195-281 (406)
356 PRK08306 dipicolinate synthase 29.2 40 0.00087 31.0 2.3 83 138-232 152-238 (296)
357 PF01795 Methyltransf_5: MraW 29.1 26 0.00056 32.6 1.0 25 213-237 219-244 (310)
358 COG1255 Uncharacterized protei 29.1 38 0.00083 26.9 1.8 86 138-234 14-101 (129)
359 PF06690 DUF1188: Protein of u 29.0 2.7E+02 0.006 25.0 7.2 88 137-240 41-131 (252)
360 cd08245 CAD Cinnamyl alcohol d 28.9 84 0.0018 28.4 4.4 87 139-233 164-254 (330)
361 PF08498 Sterol_MT_C: Sterol m 28.9 21 0.00045 25.4 0.3 12 286-297 56-67 (67)
362 PRK11064 wecC UDP-N-acetyl-D-m 28.3 99 0.0021 29.9 4.9 95 140-234 5-118 (415)
363 TIGR03366 HpnZ_proposed putati 27.7 81 0.0017 28.2 4.0 88 138-233 121-216 (280)
364 PRK05786 fabG 3-ketoacyl-(acyl 27.3 58 0.0013 27.9 2.9 96 139-234 6-134 (238)
365 PF03721 UDPG_MGDP_dh_N: UDP-g 27.2 53 0.0011 27.9 2.5 21 214-234 99-119 (185)
366 cd08295 double_bond_reductase_ 27.2 97 0.0021 28.4 4.5 89 138-233 152-249 (338)
367 COG0677 WecC UDP-N-acetyl-D-ma 26.8 3E+02 0.0066 26.7 7.6 80 156-235 29-128 (436)
368 cd08266 Zn_ADH_like1 Alcohol d 26.5 1.2E+02 0.0026 27.2 4.9 86 139-233 168-263 (342)
369 COG4017 Uncharacterized protei 26.5 1.5E+02 0.0032 26.0 4.9 88 137-238 44-132 (254)
370 COG0270 Dcm Site-specific DNA 26.4 1E+02 0.0022 28.6 4.5 92 139-234 4-115 (328)
371 COG0604 Qor NADPH:quinone redu 26.2 24 0.00051 32.9 0.2 87 138-233 143-239 (326)
372 PLN02740 Alcohol dehydrogenase 25.6 1.3E+02 0.0027 28.3 5.1 89 138-233 199-298 (381)
373 PRK07502 cyclohexadienyl dehyd 25.4 56 0.0012 29.9 2.5 84 139-231 7-96 (307)
374 COG1748 LYS9 Saccharopine dehy 25.1 31 0.00068 33.1 0.8 68 139-206 2-76 (389)
375 PF07101 DUF1363: Protein of u 24.9 30 0.00065 26.4 0.5 11 140-150 5-15 (124)
376 PRK10309 galactitol-1-phosphat 24.6 1.6E+02 0.0034 27.0 5.5 88 138-233 161-258 (347)
377 PHA03412 putative methyltransf 24.3 97 0.0021 27.8 3.7 41 131-171 186-230 (241)
378 PRK15057 UDP-glucose 6-dehydro 23.9 98 0.0021 29.7 3.9 19 159-177 22-40 (388)
379 PRK06853 indolepyruvate oxidor 23.5 1.1E+02 0.0025 26.0 3.9 32 196-235 66-97 (197)
380 KOG1227 Putative methyltransfe 23.2 68 0.0015 29.9 2.5 88 139-234 196-294 (351)
381 PF03686 UPF0146: Uncharacteri 23.0 33 0.00071 27.6 0.4 87 137-234 13-101 (127)
382 cd08238 sorbose_phosphate_red 23.0 1.2E+02 0.0027 28.8 4.5 89 139-233 177-286 (410)
383 PRK06274 indolepyruvate oxidor 22.9 1.4E+02 0.003 25.3 4.4 32 196-235 65-96 (197)
384 KOG1501 Arginine N-methyltrans 22.7 28 0.0006 34.1 -0.1 38 140-177 69-107 (636)
385 PF13602 ADH_zinc_N_2: Zinc-bi 22.0 34 0.00073 26.4 0.3 34 195-233 16-49 (127)
386 PRK05476 S-adenosyl-L-homocyst 22.0 74 0.0016 31.0 2.7 83 138-234 212-298 (425)
387 PRK05708 2-dehydropantoate 2-r 21.8 1.9E+02 0.0042 26.4 5.4 90 139-233 3-102 (305)
388 TIGR00675 dcm DNA-methyltransf 21.6 36 0.00078 31.5 0.5 62 141-205 1-66 (315)
389 PLN02349 glycerol-3-phosphate 21.6 1E+02 0.0022 29.7 3.5 36 202-237 256-302 (426)
390 cd08285 NADP_ADH NADP(H)-depen 20.9 2E+02 0.0043 26.4 5.3 85 139-233 168-264 (351)
391 COG1743 Adenine-specific DNA m 20.7 1.9E+02 0.0042 30.5 5.4 23 215-237 568-590 (875)
392 cd08255 2-desacetyl-2-hydroxye 20.7 2.4E+02 0.0053 24.6 5.7 85 138-233 98-188 (277)
393 PRK08324 short chain dehydroge 20.6 82 0.0018 32.5 2.8 96 139-234 423-556 (681)
394 COG0863 DNA modification methy 20.3 60 0.0013 29.2 1.6 48 131-178 216-263 (302)
395 PRK06035 3-hydroxyacyl-CoA deh 20.0 59 0.0013 29.5 1.5 92 139-232 4-118 (291)
No 1
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.82 E-value=1.3e-20 Score=174.66 Aligned_cols=156 Identities=17% Similarity=0.275 Sum_probs=117.7
Q ss_pred CceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
.+|||+|||+|.........+.+|+|||+|++|++.|++ +++++++|+ +++++++++||+|+|..+++
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~da---e~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTA---EKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCH---HHhhhccCCCCEEEEhhHHH
Confidence 479999999997444444467899999999999997753 367889998 88888889999999999999
Q ss_pred ccCCHHHHHHHHHhhccCCcEEEEEecCcchHH--------HHHHhhhhcCCCchh-----hhHHHHHHHhCCCCCCeee
Q 022305 210 YLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWT--------KAISIWTSTGDADHV-----MIVGAYFHYAGGYEPPQAV 276 (299)
Q Consensus 210 ~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~--------~~~~~~~~~~~~~~~-----~~~~~~~~~~aGF~~v~~~ 276 (299)
|+.|+..+++++.++|||||.+++++.+..... +.+..|...+..... .-+...+ +.+||+.+++.
T Consensus 210 Hv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL-~~aGf~i~~~~ 288 (322)
T PLN02396 210 HVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMIL-QRASVDVKEMA 288 (322)
T ss_pred hcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHH-HHcCCeEEEEe
Confidence 999999999999999999999999988865321 112233332211111 1122233 56999999998
Q ss_pred ecCCCC--------CCCCCeEEEEEEecCC
Q 022305 277 DISPNP--------GRSDPMYVVYSRKAST 298 (299)
Q Consensus 277 ~~~~~~--------~~~~p~~~v~arK~~~ 298 (299)
.+...| ...+-.|++.|.|+++
T Consensus 289 G~~~~p~~~~w~~~~~~~~ny~~~~~k~~~ 318 (322)
T PLN02396 289 GFVYNPITGRWLLSDDISVNYIAYGTKRKD 318 (322)
T ss_pred eeEEcCcCCeEEecCCCceeehhheecCcc
Confidence 886554 2356779999999876
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.82 E-value=2.2e-20 Score=165.28 Aligned_cols=99 Identities=31% Similarity=0.453 Sum_probs=85.3
Q ss_pred cCCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|...+ ....+.++|+|+|+|+.||+.++++ ++|+++|+ ++|||+|++||+|++.+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dA---e~LPf~D~sFD~vt~~f 127 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDA---ENLPFPDNSFDAVTISF 127 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEech---hhCCCCCCccCEEEeee
Confidence 46899999999997333 3333468999999999999988763 66999999 99999999999999999
Q ss_pred cccccCCHHHHHHHHHhhccCCcEE-EEEecCc
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLA-IVSFSNR 238 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~l-ii~~~~~ 238 (299)
+|++++|++++|+|++|||||||.+ ++++..+
T Consensus 128 glrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 128 GLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred hhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 9999999999999999999999955 5566553
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.79 E-value=1.1e-19 Score=161.61 Aligned_cols=99 Identities=27% Similarity=0.420 Sum_probs=71.7
Q ss_pred hcCCceeeccCcCCccc--cCCC-CCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEe
Q 022305 136 KYYSEVFPPSNTPGVSH--FPPG-YKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~--~~~~-~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
+...+|||+|||+|... +... .+..+|+|+|+|++||+.+++ +++++++|+ +++||++++||+|+|
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da---~~lp~~d~sfD~v~~ 122 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDA---EDLPFPDNSFDAVTC 122 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BT---TB--S-TT-EEEEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCH---HHhcCCCCceeEEEH
Confidence 34569999999999633 3332 245799999999999998765 478999999 999999999999999
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEE-EEecC
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAI-VSFSN 237 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~li-i~~~~ 237 (299)
.+++++++|+.++++|++|+|||||.++ +++..
T Consensus 123 ~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~ 156 (233)
T PF01209_consen 123 SFGLRNFPDRERALREMYRVLKPGGRLVILEFSK 156 (233)
T ss_dssp ES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred HhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence 9999999999999999999999999665 45544
No 4
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.78 E-value=1.6e-19 Score=157.77 Aligned_cols=157 Identities=16% Similarity=0.249 Sum_probs=117.2
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
...+|||+|||.|....+.+..+++|+|+|+|+.+++.|+.. +++..... +++....++||+|+|..+++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~---edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATV---EDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhH---HHHHhcCCCccEEEEhhHHH
Confidence 346899999999987777777789999999999999988753 55777777 67766668999999999999
Q ss_pred ccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHH--------HhhhhcCCCchhhhHHH--HHH--HhCCCCCCeeee
Q 022305 210 YLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAI--------SIWTSTGDADHVMIVGA--YFH--YAGGYEPPQAVD 277 (299)
Q Consensus 210 ~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~--~~~--~~aGF~~v~~~~ 277 (299)
|++||..+++++.+.+||||.+++++.|+.+..... -.|...+-...-.++.+ ... ..+|+...+...
T Consensus 136 Hv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g 215 (243)
T COG2227 136 HVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKG 215 (243)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecc
Confidence 999999999999999999999999999976543322 22433332221122222 111 446788777777
Q ss_pred cCCCC--------CCCCCeEEEEEEec
Q 022305 278 ISPNP--------GRSDPMYVVYSRKA 296 (299)
Q Consensus 278 ~~~~~--------~~~~p~~~v~arK~ 296 (299)
+..+| ...+-.|.+.++|+
T Consensus 216 ~~y~p~~~~~~l~~~~~vNy~~~~~~~ 242 (243)
T COG2227 216 LTYNPLTNSWKLSNDVSVNYMVHAQRP 242 (243)
T ss_pred eEeccccceEEecCCccceEEEEeecC
Confidence 76554 34567799999886
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.77 E-value=2.8e-18 Score=155.30 Aligned_cols=97 Identities=24% Similarity=0.350 Sum_probs=81.8
Q ss_pred cCCceeeccCcCCccccC--CCC-CCCeEEEEeCCHHHHHhcCC-----------CCcEEEeccCCCCCCCCCCCCeeEE
Q 022305 137 YYSEVFPPSNTPGVSHFP--PGY-KQDRIVGMGMNEEELKRNPV-----------LTEYVVQDLNLNPKLPFEDNSFDVI 202 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~--~~~-~~~~v~gvD~S~~ml~~a~~-----------~~~~~~~D~~~~~~lpf~~~~FD~V 202 (299)
...+|||+|||+|..... ... +..+|+|+|+|++|++.|++ +++++++|+ +.+|+++++||+|
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~---~~lp~~~~sfD~V 149 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA---TDLPFDDCYFDAI 149 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccc---ccCCCCCCCEeEE
Confidence 346899999999963332 222 34699999999999997743 367899999 8999999999999
Q ss_pred EecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 203 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 203 is~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+++++++|++|+.++++|++|+|||||.+++...
T Consensus 150 ~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 150 TMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred EEecccccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 9999999999999999999999999998877643
No 6
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.76 E-value=2.2e-19 Score=135.75 Aligned_cols=89 Identities=27% Similarity=0.418 Sum_probs=73.8
Q ss_pred eeccCcCCccccCC-CCCCCeEEEEeCCHHHHHhcCCC-----CcEEEeccCCCCCCCCCCCCeeEEEecccccccCCHH
Q 022305 142 FPPSNTPGVSHFPP-GYKQDRIVGMGMNEEELKRNPVL-----TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPI 215 (299)
Q Consensus 142 LDiGcG~G~~~~~~-~~~~~~v~gvD~S~~ml~~a~~~-----~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~ 215 (299)
||+|||.|...... ..++.+++|+|+|++|++.+++. +.+..+|. +.+|+++++||+|++..+++|++++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~---~~l~~~~~sfD~v~~~~~~~~~~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDA---EDLPFPDNSFDVVFSNSVLHHLEDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBT---TSSSS-TT-EEEEEEESHGGGSSHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehH---HhCccccccccccccccceeeccCHH
Confidence 79999999622222 22589999999999999987763 45999999 89999999999999999999999999
Q ss_pred HHHHHHHhhccCCcEEEE
Q 022305 216 EVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 216 ~~l~ei~rvLkpGG~lii 233 (299)
++++|++|+|||||.++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999886
No 7
>PLN02244 tocopherol O-methyltransferase
Probab=99.75 E-value=1.4e-17 Score=156.12 Aligned_cols=96 Identities=20% Similarity=0.261 Sum_probs=81.6
Q ss_pred cCCceeeccCcCCccccCCC-CCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFPPG-YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~-~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|....... ..+.+|+|+|+|+.|++.+++ +++++++|+ .++|+++++||+|++..
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~---~~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADA---LNQPFEDGQFDLVWSME 194 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc---ccCCCCCCCccEEEECC
Confidence 34689999999996333222 126899999999999987653 378999999 88999999999999999
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
+++|++|+.+++++++|+|||||.++|..
T Consensus 195 ~~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 195 SGEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred chhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 99999999999999999999999988864
No 8
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.74 E-value=6.2e-18 Score=151.81 Aligned_cols=125 Identities=16% Similarity=0.308 Sum_probs=99.2
Q ss_pred hccccHHHHHHhhh-cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC---CcEEEeccCCCCCCCCCCCC
Q 022305 123 VTHIDDPAIAALTK-YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFEDNS 198 (299)
Q Consensus 123 ~~~l~~~~~~~l~~-~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~---~~~~~~D~~~~~~lpf~~~~ 198 (299)
.....+.+++.+.. ...+|||+|||+|.........+.+++|+|+|+.|++.++++ ..++++|+ +.+|+++++
T Consensus 27 q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~---~~~~~~~~~ 103 (251)
T PRK10258 27 QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADHYLAGDI---ESLPLATAT 103 (251)
T ss_pred HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCCEEEcCc---ccCcCCCCc
Confidence 33344445555543 457899999999963332233468999999999999988765 57899999 889999999
Q ss_pred eeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhh
Q 022305 199 FDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTS 250 (299)
Q Consensus 199 FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~ 250 (299)
||+|+++.+++|++|+..+|+++.|+|||||.++++......+.+....|..
T Consensus 104 fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~ 155 (251)
T PRK10258 104 FDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQA 155 (251)
T ss_pred EEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHH
Confidence 9999999999999999999999999999999999987776666665555544
No 9
>PRK05785 hypothetical protein; Provisional
Probab=99.73 E-value=3.3e-18 Score=151.58 Aligned_cols=96 Identities=22% Similarity=0.303 Sum_probs=81.1
Q ss_pred CCceeeccCcCCccccCCCCC-CCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCCCCCCeeEEEecccccccCCHHH
Q 022305 138 YSEVFPPSNTPGVSHFPPGYK-QDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIE 216 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~-~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~~ 216 (299)
..+|||+|||+|......... +.+|+|+|+|++|++.|+++..++++|+ +.+|+++++||+|++.++++|++|+++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~---~~lp~~d~sfD~v~~~~~l~~~~d~~~ 128 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSF---EALPFRDKSFDVVMSSFALHASDNIEK 128 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccceEEech---hhCCCCCCCEEEEEecChhhccCCHHH
Confidence 579999999999633322212 5799999999999999988778899999 899999999999999999999999999
Q ss_pred HHHHHHhhccCCcEEEEEecC
Q 022305 217 VFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 217 ~l~ei~rvLkpGG~lii~~~~ 237 (299)
+++|++|+|||. ..++++..
T Consensus 129 ~l~e~~RvLkp~-~~ile~~~ 148 (226)
T PRK05785 129 VIAEFTRVSRKQ-VGFIAMGK 148 (226)
T ss_pred HHHHHHHHhcCc-eEEEEeCC
Confidence 999999999994 33555544
No 10
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.71 E-value=4e-18 Score=141.54 Aligned_cols=133 Identities=23% Similarity=0.306 Sum_probs=96.9
Q ss_pred hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCCCCCCeeEEEecccccccCCHH
Q 022305 136 KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPI 215 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~ 215 (299)
....+|||+|||.|.........+.+++|+|+|+.|++. ........+. ...+.++++||+|+|+.+++|++|+.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~--~~~~~~~~~~---~~~~~~~~~fD~i~~~~~l~~~~d~~ 95 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK--RNVVFDNFDA---QDPPFPDGSFDLIICNDVLEHLPDPE 95 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH--TTSEEEEEEC---HTHHCHSSSEEEEEEESSGGGSSHHH
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh--hhhhhhhhhh---hhhhccccchhhHhhHHHHhhcccHH
Confidence 456799999999996333223345699999999999998 4455555555 45567789999999999999999999
Q ss_pred HHHHHHHhhccCCcEEEEEecCcc-hHHHHHHhhhhcCCC-chhhhHH-----HHHHHhCCCCCCe
Q 022305 216 EVFKEMCQVLKPGGLAIVSFSNRC-FWTKAISIWTSTGDA-DHVMIVG-----AYFHYAGGYEPPQ 274 (299)
Q Consensus 216 ~~l~ei~rvLkpGG~lii~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~aGF~~v~ 274 (299)
.+|+++.++|||||++++++++.. ........|...... .|..++. ..+ +.+||+.++
T Consensus 96 ~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~~G~~iv~ 160 (161)
T PF13489_consen 96 EFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLL-EQAGFEIVE 160 (161)
T ss_dssp HHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHH-HHTTEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHH-HHCCCEEEE
Confidence 999999999999999999988753 344444555332211 3333322 233 669998765
No 11
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.70 E-value=1.2e-16 Score=149.04 Aligned_cols=155 Identities=18% Similarity=0.229 Sum_probs=111.1
Q ss_pred cCCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCC-----CCcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPV-----LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~-----~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
...+|||+|||+|...+ ....+..+++|+|+|++|++.+++ +++++.+|+ +.+++++++||+|+++.+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~---e~lp~~~~sFDvVIs~~~L~ 189 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDA---EDLPFPTDYADRYVSAGSIE 189 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccH---HhCCCCCCceeEEEEcChhh
Confidence 34689999999996332 233355799999999999998765 378899999 88999999999999999999
Q ss_pred ccCCHHHHHHHHHhhccCCcEEEEEec-CcchHHHHH--HhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCC----
Q 022305 210 YLTKPIEVFKEMCQVLKPGGLAIVSFS-NRCFWTKAI--SIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNP---- 282 (299)
Q Consensus 210 ~~~d~~~~l~ei~rvLkpGG~lii~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~---- 282 (299)
|++++..+|++++|+|||||.+++..+ ....+.... ..|... ....-+.+++ +++||+.+++.++.+.-
T Consensus 190 ~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~---~t~eEl~~lL-~~aGF~~V~i~~i~~~~~~~~ 265 (340)
T PLN02490 190 YWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLF---PKEEEYIEWF-TKAGFKDVKLKRIGPKWYRGV 265 (340)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccC---CCHHHHHHHH-HHCCCeEEEEEEcChhhcccc
Confidence 999999999999999999998876533 232222211 122211 1112233344 56999999998886542
Q ss_pred --CCCCCeEEEEEEecCC
Q 022305 283 --GRSDPMYVVYSRKAST 298 (299)
Q Consensus 283 --~~~~p~~~v~arK~~~ 298 (299)
.+.-.-+.|.++|++.
T Consensus 266 ~~~~~~~~~~v~~~k~~~ 283 (340)
T PLN02490 266 RRHGLIMGCSVTGVKPAS 283 (340)
T ss_pred ccccceeeEEEEEecccc
Confidence 1112237789999864
No 12
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.68 E-value=8.4e-17 Score=144.95 Aligned_cols=104 Identities=13% Similarity=0.161 Sum_probs=85.9
Q ss_pred HHHHhh-hcCCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCC-CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 130 AIAALT-KYYSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPV-LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 130 ~~~~l~-~~~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~-~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
+++.+. ....+|||+|||+|.. .+....++.+|+|+|+|+.|++.+++ .++++++|+ +.++ ++++||+|+|+
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~---~~~~-~~~~fD~v~~~ 96 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDV---RDWK-PKPDTDVVVSN 96 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcCh---hhCC-CCCCceEEEEe
Confidence 445543 3457899999999972 33333457899999999999998876 488999999 6664 56799999999
Q ss_pred ccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 206 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 206 ~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
.++||++|+.+++++++++|||||.+++.++.
T Consensus 97 ~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 97 AALQWVPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred hhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 99999999999999999999999999988654
No 13
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.68 E-value=4e-16 Score=138.12 Aligned_cols=96 Identities=23% Similarity=0.356 Sum_probs=80.6
Q ss_pred CCceeeccCcCCccc--cCCCC-CCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 138 YSEVFPPSNTPGVSH--FPPGY-KQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~--~~~~~-~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
..+|||+|||+|... +.... +..+++|+|+|++|++.+++ +++++.+|. +.+++++++||+|++.+
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNA---MELPFDDNSFDYVTIGF 122 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEech---hcCCCCCCCccEEEEec
Confidence 468999999999633 22222 45799999999999987654 367888998 78888889999999999
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+++|++++.++++++.++|||||.+++...
T Consensus 123 ~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 123 GLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred ccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 999999999999999999999998877543
No 14
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.68 E-value=2e-16 Score=143.25 Aligned_cols=141 Identities=18% Similarity=0.224 Sum_probs=101.0
Q ss_pred hcCCceeeccCcCCccccCC-CCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 136 KYYSEVFPPSNTPGVSHFPP-GYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~-~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
+...+|||+|||.|...... ...+++|+|+|+|+.|++.+++ ++.++.+|+ ...|+++++||+|++..++
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~---~~~~~~~~~FD~V~s~~~l 127 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDI---LKKDFPENTFDMIYSRDAI 127 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCc---ccCCCCCCCeEEEEEhhhH
Confidence 34568999999999633222 2236799999999999987664 377888998 7889999999999999999
Q ss_pred cccC--CHHHHHHHHHhhccCCcEEEEEecCc---chHHHHHHhhhhcC--CCchhhhHHHHHHHhCCCCCCeeeecCC
Q 022305 209 DYLT--KPIEVFKEMCQVLKPGGLAIVSFSNR---CFWTKAISIWTSTG--DADHVMIVGAYFHYAGGYEPPQAVDISP 280 (299)
Q Consensus 209 ~~~~--d~~~~l~ei~rvLkpGG~lii~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~aGF~~v~~~~~~~ 280 (299)
+|++ ++..++++++++|||||.+++..... ..+......+.... .......+.+.+ +++||+.++..++++
T Consensus 128 ~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~aGF~~v~~~d~~~ 205 (263)
T PTZ00098 128 LHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLI-KSCNFQNVVAKDISD 205 (263)
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHH-HHCCCCeeeEEeCcH
Confidence 9986 88999999999999999998875432 12222222221111 111222333444 569999999988754
No 15
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.68 E-value=6e-18 Score=146.10 Aligned_cols=198 Identities=20% Similarity=0.219 Sum_probs=132.3
Q ss_pred ccCCCCCCC--CChHHHhhccCCCccc-----ccCcchhhccccHHHHHHh-hhcCCceeeccCcCCccccCCCCCCCeE
Q 022305 91 DVQWPEQFP--FKEEDFQRFDESPDSL-----FYETPRFVTHIDDPAIAAL-TKYYSEVFPPSNTPGVSHFPPGYKQDRI 162 (299)
Q Consensus 91 ~~~w~~~~p--~~~~~~~~~d~~~~~~-----~y~~~~~~~~l~~~~~~~l-~~~~~~vLDiGcG~G~~~~~~~~~~~~v 162 (299)
...-|+..| |-+..|+.|.+..+.. -|+.|.+. .+.+... ...|.++||+|||+|..-....-...++
T Consensus 75 ~~e~p~~pP~aYVe~LFD~~Ae~Fd~~LVdkL~Y~vP~~l----~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~l 150 (287)
T COG4976 75 RGETPEKPPSAYVETLFDQYAERFDHILVDKLGYSVPELL----AEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRL 150 (287)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcCccHHHH----HHHHHhccCCccceeeecccCcCcccHhHHHHHhhc
Confidence 334444444 6788999998877654 22222221 2223333 2358899999999996444444345789
Q ss_pred EEEeCCHHHHHhcCCC---CcEEEeccCCCC-CCC-CCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 163 VGMGMNEEELKRNPVL---TEYVVQDLNLNP-KLP-FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 163 ~gvD~S~~ml~~a~~~---~~~~~~D~~~~~-~lp-f~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+|+|||++|+++|.++ -...++|+ . -++ ..++.||+|++..|+.|+.+++.++.-+...|+|||+|.|++-.
T Consensus 151 tGvDiS~nMl~kA~eKg~YD~L~~Aea---~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 151 TGVDISENMLAKAHEKGLYDTLYVAEA---VLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred cCCchhHHHHHHHHhccchHHHHHHHH---HHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecc
Confidence 9999999999999876 33455555 2 222 45678999999999999999999999999999999999999765
Q ss_pred cchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCCCCC--CCeEEEEEEecC
Q 022305 238 RCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRS--DPMYVVYSRKAS 297 (299)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~~~--~p~~~v~arK~~ 297 (299)
-+.+... .......+.|-.-+-+....+.||+.+++.+++-..... -|-..|+|||+.
T Consensus 228 l~~~~~f--~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~pv~G~L~iark~~ 287 (287)
T COG4976 228 LPDDGGF--VLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRDAGEPVPGILVIARKKA 287 (287)
T ss_pred cCCCCCe--ecchhhhhccchHHHHHHHHhcCceEEEeecccchhhcCCCCCCceEEEecCC
Confidence 3322110 011112223332222223366999999999987664333 455899999974
No 16
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.67 E-value=2.9e-17 Score=148.03 Aligned_cols=107 Identities=16% Similarity=0.269 Sum_probs=86.7
Q ss_pred HHHHhhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCC-CCCCCe
Q 022305 130 AIAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLP-FEDNSF 199 (299)
Q Consensus 130 ~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lp-f~~~~F 199 (299)
+++.+.....+|||+|||+|.........+.+|+|+|+|++|++.|++ +++++++|+ ..++ +.+++|
T Consensus 37 ~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~---~~l~~~~~~~f 113 (255)
T PRK11036 37 LLAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAA---QDIAQHLETPV 113 (255)
T ss_pred HHHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCH---HHHhhhcCCCC
Confidence 334444445689999999997544444457899999999999998764 257888888 5553 667899
Q ss_pred eEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecCcc
Q 022305 200 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 200 D~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~ 239 (299)
|+|++..+++|+.++..+++++.++|||||.+++.+.+..
T Consensus 114 D~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 114 DLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred CEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 9999999999999999999999999999999988877643
No 17
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.67 E-value=1.2e-16 Score=140.19 Aligned_cols=107 Identities=26% Similarity=0.378 Sum_probs=86.1
Q ss_pred HHHHHh-hhcCCceeeccCcCCccccCC--------CCCCCeEEEEeCCHHHHHhcCCC-----------CcEEEeccCC
Q 022305 129 PAIAAL-TKYYSEVFPPSNTPGVSHFPP--------GYKQDRIVGMGMNEEELKRNPVL-----------TEYVVQDLNL 188 (299)
Q Consensus 129 ~~~~~l-~~~~~~vLDiGcG~G~~~~~~--------~~~~~~v~gvD~S~~ml~~a~~~-----------~~~~~~D~~~ 188 (299)
.+...+ .....++||++||+|...+.. .....+|+.+|+|++||+.++++ +.|+++|+
T Consensus 91 ~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA-- 168 (296)
T KOG1540|consen 91 MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA-- 168 (296)
T ss_pred HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc--
Confidence 344555 234579999999999633321 11237999999999999866542 67899999
Q ss_pred CCCCCCCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEE-EEEecCc
Q 022305 189 NPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLA-IVSFSNR 238 (299)
Q Consensus 189 ~~~lpf~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~l-ii~~~~~ 238 (299)
+.|||++++||..++.+.+.++.|++++|+|++|||||||.| +++|+..
T Consensus 169 -E~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv 218 (296)
T KOG1540|consen 169 -EDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKV 218 (296)
T ss_pred -ccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 999999999999999999999999999999999999999965 5667653
No 18
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.65 E-value=7.5e-16 Score=136.08 Aligned_cols=103 Identities=22% Similarity=0.384 Sum_probs=86.5
Q ss_pred CceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC----CCcEEEeccCCCCCCCCCCCCeeEEEecccccccC
Q 022305 139 SEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV----LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 212 (299)
Q Consensus 139 ~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~----~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~ 212 (299)
.+|||+|||+|. ..+....+..+++|+|+|+.+++.+++ +++++.+|+ +.+++++++||+|++..+++|+.
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDA---EKLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecch---hhCCCCCCceeEEEEhhhhhhcc
Confidence 589999999995 333444456789999999999987655 368999999 78888889999999999999999
Q ss_pred CHHHHHHHHHhhccCCcEEEEEecCcchHHHH
Q 022305 213 KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKA 244 (299)
Q Consensus 213 d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~ 244 (299)
++..+++++.++|||||.+++..+......+.
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~ 144 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTFGPGTLHEL 144 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeCCccCHHHH
Confidence 99999999999999999999987765544443
No 19
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.64 E-value=2.4e-16 Score=146.62 Aligned_cols=138 Identities=14% Similarity=0.124 Sum_probs=94.9
Q ss_pred CCceeeccCcCCccccCCCC-CCCeEEEEeCCHHHHHhc---------CCCCcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGY-KQDRIVGMGMNEEELKRN---------PVLTEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~-~~~~v~gvD~S~~ml~~a---------~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
..+|||+|||+|........ ....|+|+|+|+.|+.++ ..+++++.+|+ +.+|+ +++||+|+|..+
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~---e~lp~-~~~FD~V~s~~v 198 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGI---EQLPA-LKAFDTVFSMGV 198 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCH---HHCCC-cCCcCEEEECCh
Confidence 36899999999974332222 234699999999988642 12478899999 88888 788999999999
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEEecC---cc---h-HHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCC
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSN---RC---F-WTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISP 280 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~~~~---~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~ 280 (299)
++|+.|+..+|++++++|||||.++++... .. . ....+..+....-......+...+ +++||+.+++++.++
T Consensus 199 l~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L-~~aGF~~i~~~~~~~ 277 (322)
T PRK15068 199 LYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWL-ERAGFKDVRIVDVSV 277 (322)
T ss_pred hhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHH-HHcCCceEEEEeCCC
Confidence 999999999999999999999999987421 11 1 111111111000000111223333 669999999988754
No 20
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.63 E-value=9.7e-16 Score=149.77 Aligned_cols=138 Identities=22% Similarity=0.268 Sum_probs=98.4
Q ss_pred cCCceeeccCcCCccccC-CCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 137 YYSEVFPPSNTPGVSHFP-PGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~-~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
...+|||+|||+|..... ....+.+++|+|+|+.|++.|++ ++++.++|+ ..+++++++||+|+|..++
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~I~s~~~l 342 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADC---TKKTYPDNSFDVIYSRDTI 342 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCc---ccCCCCCCCEEEEEECCcc
Confidence 346899999999963221 12236799999999999987754 367899999 7788888999999999999
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEEEecCcc--hHHHHHH-hhhhcC-CCchhhhHHHHHHHhCCCCCCeeeec
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC--FWTKAIS-IWTSTG-DADHVMIVGAYFHYAGGYEPPQAVDI 278 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~--~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~aGF~~v~~~~~ 278 (299)
+|++|+..++++++|+|||||.++++..... .....+. .+...+ .......+.+.+ ..+||+.+++.+.
T Consensus 343 ~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l-~~aGF~~i~~~d~ 415 (475)
T PLN02336 343 LHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQML-KDAGFDDVIAEDR 415 (475)
T ss_pred cccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHH-HHCCCeeeeeecc
Confidence 9999999999999999999999988754321 1111111 111111 112223333333 5699999877764
No 21
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.62 E-value=1.4e-15 Score=140.70 Aligned_cols=138 Identities=12% Similarity=0.028 Sum_probs=93.2
Q ss_pred CCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcC---------CCCcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNP---------VLTEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~---------~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
..+|||+|||+|.........+ ..|+|+|+|+.|+.+++ .++.+...++ +.++.. ++||+|+|+.+
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~i---e~lp~~-~~FD~V~s~gv 197 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGI---EQLHEL-YAFDTVFSMGV 197 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCH---HHCCCC-CCcCEEEEcch
Confidence 3689999999996333222223 47999999999986431 2356777888 777764 47999999999
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEEecCc------ch-HHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCC
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR------CF-WTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISP 280 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~ 280 (299)
++|++++..+|++++|+|||||.+++++... .. ....+.......-......+..++ +++||+.+++++...
T Consensus 198 L~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L-~~aGF~~V~i~~~~~ 276 (314)
T TIGR00452 198 LYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWL-EKVGFENFRILDVLK 276 (314)
T ss_pred hhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHH-HHCCCeEEEEEeccC
Confidence 9999999999999999999999999874311 00 011111111100001122233344 569999999988754
No 22
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.61 E-value=1.6e-15 Score=135.28 Aligned_cols=136 Identities=15% Similarity=0.252 Sum_probs=94.1
Q ss_pred CCCCCCCCChHHHhhccCCCcc--cccCcchhhccccHHHHHHhhhcCCceeeccCcCCcccc--CC--CCCCCeEEEEe
Q 022305 93 QWPEQFPFKEEDFQRFDESPDS--LFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSHF--PP--GYKQDRIVGMG 166 (299)
Q Consensus 93 ~w~~~~p~~~~~~~~~d~~~~~--~~y~~~~~~~~l~~~~~~~l~~~~~~vLDiGcG~G~~~~--~~--~~~~~~v~gvD 166 (299)
.|+..|-|.+.....|+..... -.|.. +...+ ..+.+.+.....+|||+|||+|.... .. ..++.+++|+|
T Consensus 10 ~~~~~~~~~~~~a~~y~~~~~~~~p~y~~--~~~~~-~~l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD 86 (239)
T TIGR00740 10 AKLGDFIFDENVAEVFPDMIQRSVPGYSN--IITAI-GMLAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGID 86 (239)
T ss_pred cccCCCccChHHHHhCcchhhccCCCHHH--HHHHH-HHHHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEe
Confidence 5666665665555566653321 11221 22222 11223333345689999999997332 22 23578999999
Q ss_pred CCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecccccccC--CHHHHHHHHHhhccCCcEEEEEe
Q 022305 167 MNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 167 ~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~--d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
+|+.|++.|++ +++++++|+ ..++++ .+|+|++..++||++ ++..++++++|+|||||.+++..
T Consensus 87 ~s~~ml~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 87 NSQPMVERCRQHIAAYHSEIPVEILCNDI---RHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred CCHHHHHHHHHHHHhcCCCCCeEEEECCh---hhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 99999987754 257889999 777765 489999999999996 46789999999999999998874
Q ss_pred c
Q 022305 236 S 236 (299)
Q Consensus 236 ~ 236 (299)
+
T Consensus 162 ~ 162 (239)
T TIGR00740 162 K 162 (239)
T ss_pred c
Confidence 3
No 23
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.61 E-value=8.3e-16 Score=135.60 Aligned_cols=137 Identities=17% Similarity=0.257 Sum_probs=100.4
Q ss_pred CceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC--------------CcEEEeccCCCCCCCCCCCCeeEEEe
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL--------------TEYVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~--------------~~~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
.+|||+|||+|....+....++.|+|||+++.|++.|++. +++...|+ +.+ .+.||+|+|
T Consensus 91 ~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~---E~~---~~~fDaVvc 164 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDV---EGL---TGKFDAVVC 164 (282)
T ss_pred ceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcch---hhc---ccccceeee
Confidence 4699999999987777777789999999999999988763 33444455 333 244999999
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEEEEecCcch--------HHHHHHhhhhcCCCchhhhHHH-----HHHHhCCCC
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCF--------WTKAISIWTSTGDADHVMIVGA-----YFHYAGGYE 271 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~aGF~ 271 (299)
+.+++|+.||..++..+.+.|||||.++|++.|+.. +.+....|...+......|+.. .+ ..+|+.
T Consensus 165 sevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l-~~~~~~ 243 (282)
T KOG1270|consen 165 SEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSIL-NANGAQ 243 (282)
T ss_pred HHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHH-HhcCcc
Confidence 999999999999999999999999999999888643 3444444444443322233332 33 446788
Q ss_pred CCeeeecCCCC
Q 022305 272 PPQAVDISPNP 282 (299)
Q Consensus 272 ~v~~~~~~~~~ 282 (299)
...+.+.-..|
T Consensus 244 v~~v~G~~y~p 254 (282)
T KOG1270|consen 244 VNDVVGEVYNP 254 (282)
T ss_pred hhhhhcccccc
Confidence 77776665554
No 24
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.61 E-value=2.7e-15 Score=127.95 Aligned_cols=137 Identities=20% Similarity=0.358 Sum_probs=97.9
Q ss_pred CceeeccCcCCccc-cCCCCCCCeEEEEeCCHHHHHhcCC--------CCc-EEEeccCCCCCCC-CCCCCeeEEEeccc
Q 022305 139 SEVFPPSNTPGVSH-FPPGYKQDRIVGMGMNEEELKRNPV--------LTE-YVVQDLNLNPKLP-FEDNSFDVITNVVS 207 (299)
Q Consensus 139 ~~vLDiGcG~G~~~-~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~-~~~~D~~~~~~lp-f~~~~FD~Vis~~~ 207 (299)
..+|++|||+|... +..-.++.+|+++|+|+.|-+.+.+ +++ |++++. +++| ++++++|+|++..+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~g---e~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADG---ENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeech---hcCcccccCCeeeEEEEEE
Confidence 45799999999732 3333478999999999999886543 244 899999 8998 89999999999999
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEEecCc---chHHHHHH-----hhhhcCCCchh-hhHHHHHHHhCCCCCCeeeec
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR---CFWTKAIS-----IWTSTGDADHV-MIVGAYFHYAGGYEPPQAVDI 278 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~---~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~aGF~~v~~~~~ 278 (299)
|+...|+.+.|+|+.|+|||||.+++-.... .+|..... .|.-..+-.+. +-.++.+ ..+-|+.++....
T Consensus 155 LCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd~~e~L-eda~f~~~~~kr~ 233 (252)
T KOG4300|consen 155 LCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRDTGELL-EDAEFSIDSCKRF 233 (252)
T ss_pred EeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEehhHHHHh-hhcccccchhhcc
Confidence 9999999999999999999999877754332 23333222 23332332332 2233444 3466887776555
Q ss_pred C
Q 022305 279 S 279 (299)
Q Consensus 279 ~ 279 (299)
+
T Consensus 234 ~ 234 (252)
T KOG4300|consen 234 N 234 (252)
T ss_pred c
Confidence 4
No 25
>PRK08317 hypothetical protein; Provisional
Probab=99.60 E-value=8.2e-15 Score=129.21 Aligned_cols=138 Identities=22% Similarity=0.340 Sum_probs=98.6
Q ss_pred cCCceeeccCcCCccc--cCCCC-CCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSH--FPPGY-KQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~--~~~~~-~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|... +.... +.++++|+|+|+.+++.++++ ++++..|+ ..+++++++||+|++..
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~~~~~~D~v~~~~ 95 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA---DGLPFPDGSFDAVRSDR 95 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc---ccCCCCCCCceEEEEec
Confidence 3468999999999632 22222 467999999999999876543 77888898 77888889999999999
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEecCc----------chHHHHHHhhhhcCCCch-hhhHHHHHHHhCCCCCCee
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR----------CFWTKAISIWTSTGDADH-VMIVGAYFHYAGGYEPPQA 275 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~aGF~~v~~ 275 (299)
+++|+.++..+++++.++|||||.+++..+.. ....+....|........ ...+.+.+ ..+||+.+++
T Consensus 96 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~aGf~~~~~ 174 (241)
T PRK08317 96 VLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLF-REAGLTDIEV 174 (241)
T ss_pred hhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHH-HHcCCCceeE
Confidence 99999999999999999999999988865431 123333444443221111 12223333 5699998766
Q ss_pred eec
Q 022305 276 VDI 278 (299)
Q Consensus 276 ~~~ 278 (299)
...
T Consensus 175 ~~~ 177 (241)
T PRK08317 175 EPY 177 (241)
T ss_pred EEE
Confidence 443
No 26
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.60 E-value=1.7e-15 Score=136.53 Aligned_cols=105 Identities=21% Similarity=0.358 Sum_probs=85.1
Q ss_pred HHHHHhh-hcCCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCCC---CcEEEeccCCCCCCCCCCCCeeEE
Q 022305 129 PAIAALT-KYYSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFEDNSFDVI 202 (299)
Q Consensus 129 ~~~~~l~-~~~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~~---~~~~~~D~~~~~~lpf~~~~FD~V 202 (299)
.++..+. ....+|||+|||+|.. .+....++.+|+|+|+|+.|++.++++ ++++.+|+ ..+. ++++||+|
T Consensus 22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~---~~~~-~~~~fD~v 97 (258)
T PRK01683 22 DLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADI---ASWQ-PPQALDLI 97 (258)
T ss_pred HHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECch---hccC-CCCCccEE
Confidence 3444442 3457899999999963 333445678999999999999988764 67888998 5554 45689999
Q ss_pred EecccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 203 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 203 is~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+++.+++|++|+..+++++.++|||||.+++.++.
T Consensus 98 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 98 FANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred EEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 99999999999999999999999999999998654
No 27
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.60 E-value=4.8e-16 Score=119.62 Aligned_cols=88 Identities=19% Similarity=0.302 Sum_probs=55.0
Q ss_pred eeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCCC------C--cEEEeccCCCCCCCC-CCCCeeEEEecccccc
Q 022305 142 FPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPVL------T--EYVVQDLNLNPKLPF-EDNSFDVITNVVSVDY 210 (299)
Q Consensus 142 LDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~------~--~~~~~D~~~~~~lpf-~~~~FD~Vis~~~l~~ 210 (299)
||+|||+|. ..+....+..+++|+|+|+.|++.++++ . .....+.. ..... ..++||+|++..++||
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVL--DLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SS--S---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecC--ChhhcccccccceehhhhhHhh
Confidence 799999996 3333344678999999999999888775 1 22333321 11111 2269999999999999
Q ss_pred cCCHHHHHHHHHhhccCCcEE
Q 022305 211 LTKPIEVFKEMCQVLKPGGLA 231 (299)
Q Consensus 211 ~~d~~~~l~ei~rvLkpGG~l 231 (299)
++++..++++++++|||||.|
T Consensus 79 l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 LEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999976
No 28
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.59 E-value=1.2e-15 Score=126.68 Aligned_cols=96 Identities=25% Similarity=0.435 Sum_probs=81.3
Q ss_pred CCceeeccCcCCcccc--C-CCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCC--CCCCCeeEEEe
Q 022305 138 YSEVFPPSNTPGVSHF--P-PGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP--FEDNSFDVITN 204 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~--~-~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lp--f~~~~FD~Vis 204 (299)
-.+|||+|||+|.... . ...++.+++|+|+|++|++.|++ +++++++|+ .+++ ++ +.||+|++
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~---~~l~~~~~-~~~D~I~~ 79 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDI---EDLPQELE-EKFDIIIS 79 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBT---TCGCGCSS-TTEEEEEE
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeeh---hccccccC-CCeeEEEE
Confidence 3689999999997332 2 23467899999999999998776 378999999 6676 66 88999999
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
..+++|+.++..+++++.++||+||.+++....
T Consensus 80 ~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 80 NGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp ESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999999999999999999999999999887665
No 29
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.58 E-value=1e-14 Score=132.52 Aligned_cols=138 Identities=22% Similarity=0.252 Sum_probs=97.4
Q ss_pred cCCceeeccCcCCcccc--CCC-CCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGVSHF--PPG-YKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~-~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
...+|||+|||+|...+ ... .+..+|+|+|+|+.|++.+++ ++++..+|+ +.+++++++||+|+++
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~---~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI---EALPVADNSVDVIISN 153 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch---hhCCCCCCceeEEEEc
Confidence 34699999999996322 211 234689999999999998765 367888999 8889988999999999
Q ss_pred ccccccCCHHHHHHHHHhhccCCcEEEEEec--Ccc---hHHHHHHhhhhc-CCCchhhhHHHHHHHhCCCCCCeeeec
Q 022305 206 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS--NRC---FWTKAISIWTST-GDADHVMIVGAYFHYAGGYEPPQAVDI 278 (299)
Q Consensus 206 ~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~--~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~aGF~~v~~~~~ 278 (299)
.+++|.++..+++++++|+|||||.+++... ... ........|... .......-+.+.+ +.+||..+++...
T Consensus 154 ~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l-~~aGf~~v~i~~~ 231 (272)
T PRK11873 154 CVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAML-AEAGFVDITIQPK 231 (272)
T ss_pred CcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHH-HHCCCCceEEEec
Confidence 9999999999999999999999998887532 111 112222233221 1111222233344 5589999877543
No 30
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.57 E-value=2.8e-15 Score=134.52 Aligned_cols=96 Identities=14% Similarity=0.252 Sum_probs=77.6
Q ss_pred hhcCCceeeccCcCCcccc--CC--CCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeE
Q 022305 135 TKYYSEVFPPSNTPGVSHF--PP--GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDV 201 (299)
Q Consensus 135 ~~~~~~vLDiGcG~G~~~~--~~--~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~ 201 (299)
.....+|||+|||+|.... .. ..++.+++|+|+|+.|++.|++ +++++++|+ ..++++ .+|+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~---~~~~~~--~~D~ 128 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDI---RDIAIE--NASM 128 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCCh---hhCCCC--CCCE
Confidence 3445789999999997432 22 3467899999999999998754 377888998 777764 4899
Q ss_pred EEecccccccCC--HHHHHHHHHhhccCCcEEEEEe
Q 022305 202 ITNVVSVDYLTK--PIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 202 Vis~~~l~~~~d--~~~~l~ei~rvLkpGG~lii~~ 235 (299)
|+++.++||+++ ...++++++++|||||.+++..
T Consensus 129 vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 129 VVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred EehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999999999964 4689999999999999988863
No 31
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.56 E-value=5e-15 Score=134.24 Aligned_cols=122 Identities=14% Similarity=0.301 Sum_probs=89.6
Q ss_pred CcccccCcchhhccccHHHHHHhhh-----cCCceeeccCcCCcc------ccCCC-----CCCCeEEEEeCCHHHHHhc
Q 022305 112 PDSLFYETPRFVTHIDDPAIAALTK-----YYSEVFPPSNTPGVS------HFPPG-----YKQDRIVGMGMNEEELKRN 175 (299)
Q Consensus 112 ~~~~~y~~~~~~~~l~~~~~~~l~~-----~~~~vLDiGcG~G~~------~~~~~-----~~~~~v~gvD~S~~ml~~a 175 (299)
..+.|+..+.....+.+.++..+.+ ...+|+|+|||+|.- .+... ..+.+|+|+|+|+.||+.|
T Consensus 69 ~~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~A 148 (264)
T smart00138 69 NETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKA 148 (264)
T ss_pred CCCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHH
Confidence 3445666655555554444444421 235899999999951 11111 1246899999999999977
Q ss_pred CC-----------------------------------CCcEEEeccCCCCCCCCCCCCeeEEEecccccccCCH--HHHH
Q 022305 176 PV-----------------------------------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP--IEVF 218 (299)
Q Consensus 176 ~~-----------------------------------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~--~~~l 218 (299)
++ .++|.+.|+ .+.++++++||+|+|.++++|++++ .+++
T Consensus 149 r~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl---~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l 225 (264)
T smart00138 149 RAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNL---LAESPPLGDFDLIFCRNVLIYFDEPTQRKLL 225 (264)
T ss_pred HcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccC---CCCCCccCCCCEEEechhHHhCCHHHHHHHH
Confidence 65 257888898 7777778899999999999999744 5799
Q ss_pred HHHHhhccCCcEEEEEec
Q 022305 219 KEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 219 ~ei~rvLkpGG~lii~~~ 236 (299)
++++++|||||++++...
T Consensus 226 ~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 226 NRFAEALKPGGYLFLGHS 243 (264)
T ss_pred HHHHHHhCCCeEEEEECc
Confidence 999999999999999743
No 32
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.56 E-value=5.6e-15 Score=125.81 Aligned_cols=148 Identities=24% Similarity=0.282 Sum_probs=110.6
Q ss_pred cHHHHHHhhhcCCceeeccCcCCc-cccCCCCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCCC-CCCCCeeEEE
Q 022305 127 DDPAIAALTKYYSEVFPPSNTPGV-SHFPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP-FEDNSFDVIT 203 (299)
Q Consensus 127 ~~~~~~~l~~~~~~vLDiGcG~G~-~~~~~~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~lp-f~~~~FD~Vi 203 (299)
+-..+..+.+...+|||+|||.|. .......++.+..|+|++++.+..+-++ +.++++|++ +.|+ |++++||.||
T Consensus 3 D~~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld--~gL~~f~d~sFD~VI 80 (193)
T PF07021_consen 3 DLQIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLD--EGLADFPDQSFDYVI 80 (193)
T ss_pred hHHHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHH--HhHhhCCCCCccEEe
Confidence 344567777778999999999997 2222333688999999999998877654 899999996 5665 9999999999
Q ss_pred ecccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhh---------------hhcCCCchhhhHHHH--HHH
Q 022305 204 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIW---------------TSTGDADHVMIVGAY--FHY 266 (299)
Q Consensus 204 s~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~--~~~ 266 (299)
.+.+|+++.+|.++|+||.|+ |...|++|||..+|....... ..+. .-|+--+.++ +.+
T Consensus 81 lsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTP-Nih~~Ti~DFe~lc~ 156 (193)
T PF07021_consen 81 LSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTP-NIHLCTIKDFEDLCR 156 (193)
T ss_pred hHhHHHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCC-CcccccHHHHHHHHH
Confidence 999999999999999999887 559999999988887765443 2221 1222223332 226
Q ss_pred hCCCCCCeeeecCC
Q 022305 267 AGGYEPPQAVDISP 280 (299)
Q Consensus 267 ~aGF~~v~~~~~~~ 280 (299)
..|++..+-.-+..
T Consensus 157 ~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 157 ELGIRIEERVFLDG 170 (193)
T ss_pred HCCCEEEEEEEEcC
Confidence 67888877666544
No 33
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.56 E-value=4.7e-15 Score=130.71 Aligned_cols=136 Identities=13% Similarity=0.136 Sum_probs=93.7
Q ss_pred ceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 140 EVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 140 ~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
+|||+|||.|.. .+...+++.+++|+|+|+++++.+++ +++++..|. ...+++ ++||+|++..++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~---~~~~~~-~~fD~I~~~~~l 77 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDS---AKDPFP-DTYDLVFGFEVI 77 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccc---ccCCCC-CCCCEeehHHHH
Confidence 699999999962 33334456899999999999987665 257888888 555664 579999999999
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCC
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPN 281 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~ 281 (299)
+|++++..+|+++.++|||||.+++.......+...-..+.... .....-+.+.+ ..+||+.++..++.+.
T Consensus 78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~l-~~~Gf~~~~~~~~~~~ 148 (224)
T smart00828 78 HHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSY-LVTREEWAELL-ARNNLRVVEGVDASLE 148 (224)
T ss_pred HhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccc-cCCHHHHHHHH-HHCCCeEEEeEECcHh
Confidence 99999999999999999999999887543221110000000000 00111122233 5589999988887653
No 34
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.55 E-value=5.3e-14 Score=121.16 Aligned_cols=176 Identities=16% Similarity=0.325 Sum_probs=118.8
Q ss_pred CCCCCCCChHHHhhccCCCcccccCcchhhccccHHHHHHhh---hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHH
Q 022305 94 WPEQFPFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALT---KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEE 170 (299)
Q Consensus 94 w~~~~p~~~~~~~~~d~~~~~~~y~~~~~~~~l~~~~~~~l~---~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ 170 (299)
.|+-| |++.+..+|..+.....++ ..+.+..++.+. ....-|||||||+|.+.-.....+...+|+|||+.
T Consensus 10 Ppelf-Ynd~eA~kYt~nsri~~IQ-----~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSps 83 (270)
T KOG1541|consen 10 PPELF-YNDTEAPKYTQNSRIVLIQ-----AEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPS 83 (270)
T ss_pred Cccee-echhhhhhccccceeeeeh-----HHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHH
Confidence 34555 6777777777755543222 223344444442 12456999999999866655567789999999999
Q ss_pred HHHhcCCC---CcEEEeccCCCCCCCCCCCCeeEEEecccccccC-------CH----HHHHHHHHhhccCCcEEEEEec
Q 022305 171 ELKRNPVL---TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT-------KP----IEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 171 ml~~a~~~---~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~-------d~----~~~l~ei~rvLkpGG~lii~~~ 236 (299)
||+.|.+. -+++.+|+. +-+||..++||.||+..+++|+- +| ..++..++.+|++|+..++.+-
T Consensus 84 ML~~a~~~e~egdlil~DMG--~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 84 MLEQAVERELEGDLILCDMG--EGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred HHHHHHHhhhhcCeeeeecC--CCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 99988753 468899986 88999999999999999998872 33 3578889999999999999864
Q ss_pred CcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCCCCCCCeEEEEE
Q 022305 237 NRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPMYVVYS 293 (299)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~~~~p~~~v~a 293 (299)
..+. +.+..+.+.- ..+||.-=-+++.+.. ....-+|+|..
T Consensus 162 pen~--------------~q~d~i~~~a-~~aGF~GGlvVd~Pes-~k~kK~yLVL~ 202 (270)
T KOG1541|consen 162 PENE--------------AQIDMIMQQA-MKAGFGGGLVVDWPES-TKNKKYYLVLM 202 (270)
T ss_pred ccch--------------HHHHHHHHHH-HhhccCCceeeecccc-cccceeEEEEe
Confidence 3221 1111222211 3478887666665432 23345566653
No 35
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.53 E-value=2.7e-15 Score=117.52 Aligned_cols=94 Identities=20% Similarity=0.282 Sum_probs=74.1
Q ss_pred CceeeccCcCCccccCCCC--CCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecc-
Q 022305 139 SEVFPPSNTPGVSHFPPGY--KQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV- 206 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~--~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~- 206 (299)
.+|||+|||+|...+.... ++.+++|+|+|++|++.+++ +++++++|+ ....-..+.||+|++..
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~~D~v~~~~~ 79 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA---EFDPDFLEPFDLVICSGF 79 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC---HGGTTTSSCEEEEEECSG
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc---ccCcccCCCCCEEEECCC
Confidence 6899999999975444433 88999999999999987654 377888887 22333345699999999
Q ss_pred ccccc---CCHHHHHHHHHhhccCCcEEEEEe
Q 022305 207 SVDYL---TKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 207 ~l~~~---~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
+++++ ++..++++++.+.|||||+++|+.
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 55544 456889999999999999999975
No 36
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.52 E-value=1.7e-14 Score=131.21 Aligned_cols=100 Identities=18% Similarity=0.305 Sum_probs=76.9
Q ss_pred hhcCCceeeccCcCCcc--ccCCCCC---CCeEEEEeCCHHHHHhcCC---CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 135 TKYYSEVFPPSNTPGVS--HFPPGYK---QDRIVGMGMNEEELKRNPV---LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 135 ~~~~~~vLDiGcG~G~~--~~~~~~~---~~~v~gvD~S~~ml~~a~~---~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
.....+|||+|||+|.. .+....+ ...++|+|+|+.|++.|++ ++.+.++|+ ..+|+++++||+|++..
T Consensus 83 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~---~~lp~~~~sfD~I~~~~ 159 (272)
T PRK11088 83 DEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASS---HRLPFADQSLDAIIRIY 159 (272)
T ss_pred CCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeec---ccCCCcCCceeEEEEec
Confidence 33446799999999962 2222222 2479999999999998865 378999999 88999999999999876
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHH
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKA 244 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~ 244 (299)
+. ..++|++|+|||||.+++..++.....+.
T Consensus 160 ~~-------~~~~e~~rvLkpgG~li~~~p~~~~l~el 190 (272)
T PRK11088 160 AP-------CKAEELARVVKPGGIVITVTPGPRHLFEL 190 (272)
T ss_pred CC-------CCHHHHHhhccCCCEEEEEeCCCcchHHH
Confidence 42 24689999999999999988776544443
No 37
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.52 E-value=1.3e-14 Score=125.86 Aligned_cols=92 Identities=17% Similarity=0.224 Sum_probs=74.9
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
..+|||+|||+|.........+.+|+|+|+|+.|++.+++ ++++.+.|+ ..++++ ++||+|+|+.++|
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~---~~~~~~-~~fD~I~~~~~~~ 106 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDL---NNLTFD-GEYDFILSTVVLM 106 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecCh---hhCCcC-CCcCEEEEecchh
Confidence 4689999999997544444457899999999999987654 267788888 666664 5799999999999
Q ss_pred ccC--CHHHHHHHHHhhccCCcEEEE
Q 022305 210 YLT--KPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 210 ~~~--d~~~~l~ei~rvLkpGG~lii 233 (299)
|++ +...+++++.++|||||++++
T Consensus 107 ~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 107 FLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 886 578999999999999998544
No 38
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.52 E-value=1.6e-14 Score=130.70 Aligned_cols=168 Identities=15% Similarity=0.237 Sum_probs=107.3
Q ss_pred CCCChHHHhhccCCCcccccCcchhhccccHHHHHHhhh-cCCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhc
Q 022305 98 FPFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTK-YYSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRN 175 (299)
Q Consensus 98 ~p~~~~~~~~~d~~~~~~~y~~~~~~~~l~~~~~~~l~~-~~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a 175 (299)
-|+.+.-|..++..-|+.|.+.-.+ +.+...+.. ...+|||||||.|.-.+.....+ ..|+|+|.++....+.
T Consensus 80 ~PWRKGPf~l~gi~IDtEWrSd~KW-----~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF 154 (315)
T PF08003_consen 80 MPWRKGPFSLFGIHIDTEWRSDWKW-----DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQF 154 (315)
T ss_pred CCcccCCcccCCEeecccccccchH-----HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHH
Confidence 3456667777777777665544211 112222211 23689999999997555444445 4799999998765432
Q ss_pred C-------CCCcEEE--eccCCCCCCCCCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecC---c---ch
Q 022305 176 P-------VLTEYVV--QDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN---R---CF 240 (299)
Q Consensus 176 ~-------~~~~~~~--~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~---~---~~ 240 (299)
. ....... .-+ +.+|. .+.||+|+|..||.|..+|...|++++..|+|||.+|+++.- . ..
T Consensus 155 ~~i~~~lg~~~~~~~lplgv---E~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L 230 (315)
T PF08003_consen 155 EAIKHFLGQDPPVFELPLGV---EDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVL 230 (315)
T ss_pred HHHHHHhCCCccEEEcCcch---hhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEE
Confidence 1 1122222 344 77777 789999999999999999999999999999999999987421 1 11
Q ss_pred HHHHHHhhhhcCCCchhhh------HHHHHHHhCCCCCCeeeecCC
Q 022305 241 WTKAISIWTSTGDADHVMI------VGAYFHYAGGYEPPQAVDISP 280 (299)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~aGF~~v~~~~~~~ 280 (299)
..+ ..+.....++| ...++ +.+||+.++++++++
T Consensus 231 ~P~-----~rYa~m~nv~FiPs~~~L~~wl-~r~gF~~v~~v~~~~ 270 (315)
T PF08003_consen 231 VPE-----DRYAKMRNVWFIPSVAALKNWL-ERAGFKDVRCVDVSP 270 (315)
T ss_pred ccC-----CcccCCCceEEeCCHHHHHHHH-HHcCCceEEEecCcc
Confidence 111 01111112222 22344 569999999999964
No 39
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.51 E-value=1.4e-13 Score=115.70 Aligned_cols=70 Identities=29% Similarity=0.476 Sum_probs=63.2
Q ss_pred EEEeCCHHHHHhcCC-----------CCcEEEeccCCCCCCCCCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEE
Q 022305 163 VGMGMNEEELKRNPV-----------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLA 231 (299)
Q Consensus 163 ~gvD~S~~ml~~a~~-----------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~l 231 (299)
+|+|+|++||+.|++ +++++++|+ +++|+++++||+|++.++++|++|+.++|+|++|+|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~---~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDA---IDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEech---hhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 589999999997732 268999999 899999999999999999999999999999999999999988
Q ss_pred EEEe
Q 022305 232 IVSF 235 (299)
Q Consensus 232 ii~~ 235 (299)
++..
T Consensus 78 ~i~d 81 (160)
T PLN02232 78 SILD 81 (160)
T ss_pred EEEE
Confidence 7653
No 40
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.49 E-value=1.8e-13 Score=117.74 Aligned_cols=133 Identities=14% Similarity=0.105 Sum_probs=93.6
Q ss_pred cCCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|...+ ....++.+|+|+|+|+.|++.+++ +++++.+|+ ..++. +++||+|++..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~---~~~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRA---EEFGQ-EEKFDVVTSRA 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccH---hhCCC-CCCccEEEEcc
Confidence 35789999999997333 334567899999999999987654 278899998 67776 77999999975
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCCCCCC
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSD 286 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~~~~ 286 (299)
+.++..++++++++|||||.+++...... ... +. ...+..|+...+.....-+ |-..
T Consensus 121 ----~~~~~~~l~~~~~~LkpGG~lv~~~~~~~-~~~----------------l~-~~~~~~~~~~~~~~~~~~~-~~~~ 177 (187)
T PRK00107 121 ----VASLSDLVELCLPLLKPGGRFLALKGRDP-EEE----------------IA-ELPKALGGKVEEVIELTLP-GLDG 177 (187)
T ss_pred ----ccCHHHHHHHHHHhcCCCeEEEEEeCCCh-HHH----------------HH-HHHHhcCceEeeeEEEecC-CCCC
Confidence 46789999999999999999887643211 000 01 1124457776666555443 3344
Q ss_pred CeEEEEEEec
Q 022305 287 PMYVVYSRKA 296 (299)
Q Consensus 287 p~~~v~arK~ 296 (299)
|-..++-||.
T Consensus 178 ~~~~~~~~~~ 187 (187)
T PRK00107 178 ERHLVIIRKK 187 (187)
T ss_pred cEEEEEEecC
Confidence 5566666663
No 41
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.48 E-value=1.4e-14 Score=112.04 Aligned_cols=86 Identities=22% Similarity=0.437 Sum_probs=66.5
Q ss_pred eeeccCcCCcccc--C---CCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCeeEEEec-cc
Q 022305 141 VFPPSNTPGVSHF--P---PGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNV-VS 207 (299)
Q Consensus 141 vLDiGcG~G~~~~--~---~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~FD~Vis~-~~ 207 (299)
|||+|||+|.... . ...+..+++|+|+|++|++.++++ ++++++|+ .++++.+++||+|++. .+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~---~~l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADA---RDLPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCT---TCHHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCH---hHCcccCCCeeEEEEcCCc
Confidence 7999999997221 1 111348999999999999977653 68999999 8899989999999994 55
Q ss_pred ccccC--CHHHHHHHHHhhccCCc
Q 022305 208 VDYLT--KPIEVFKEMCQVLKPGG 229 (299)
Q Consensus 208 l~~~~--d~~~~l~ei~rvLkpGG 229 (299)
++|+. +..++++++.++|||||
T Consensus 78 ~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCC
Confidence 99986 46789999999999998
No 42
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.48 E-value=2.9e-13 Score=117.03 Aligned_cols=137 Identities=22% Similarity=0.233 Sum_probs=95.4
Q ss_pred cCCceeeccCcCCccccCC-CCCCCeEEEEeCCHHHHHhcCC-CCcEEEeccCCCCC-C-CCCCCCeeEEEecccccccC
Q 022305 137 YYSEVFPPSNTPGVSHFPP-GYKQDRIVGMGMNEEELKRNPV-LTEYVVQDLNLNPK-L-PFEDNSFDVITNVVSVDYLT 212 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~-~~~~~~v~gvD~S~~ml~~a~~-~~~~~~~D~~~~~~-l-pf~~~~FD~Vis~~~l~~~~ 212 (299)
...+|||+|||+|...... ...+..++|+|+|++|++.+++ .++++.+|+ .. + ++++++||+|+++.+++|++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~---~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDL---DEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEh---hhcccccCCCCcCEEEEhhHhHcCc
Confidence 3468999999999633222 2235678999999999988754 488999998 43 4 47788999999999999999
Q ss_pred CHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhc------------CCCchhhh--HHHH--HHHhCCCCCCeee
Q 022305 213 KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTST------------GDADHVMI--VGAY--FHYAGGYEPPQAV 276 (299)
Q Consensus 213 d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~------------~~~~~~~~--~~~~--~~~~aGF~~v~~~ 276 (299)
|+..+++++.|+++ .+++++++...+......+... .+..+..+ ...+ +.+++||+.++..
T Consensus 90 d~~~~l~e~~r~~~---~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~ 166 (194)
T TIGR02081 90 NPEEILDEMLRVGR---HAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRA 166 (194)
T ss_pred CHHHHHHHHHHhCC---eEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEE
Confidence 99999999988765 5677888866555433322210 01111122 1221 2277999998876
Q ss_pred ecC
Q 022305 277 DIS 279 (299)
Q Consensus 277 ~~~ 279 (299)
...
T Consensus 167 ~~~ 169 (194)
T TIGR02081 167 AFD 169 (194)
T ss_pred Eec
Confidence 664
No 43
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.47 E-value=3.7e-13 Score=118.94 Aligned_cols=94 Identities=28% Similarity=0.407 Sum_probs=77.6
Q ss_pred CCceeeccCcCCccc--cCCCCC-CCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 138 YSEVFPPSNTPGVSH--FPPGYK-QDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~--~~~~~~-~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
..+|||+|||+|... +....+ ..+++|+|+++.+++.+++ .++++.+|+ ..+++++++||+|++.
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~D~I~~~ 128 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDA---EALPFPDNSFDAVTIA 128 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccc---ccCCCCCCCccEEEEe
Confidence 468999999999622 222223 5899999999999986654 267888888 7777878899999999
Q ss_pred ccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 206 VSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 206 ~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
.++++++++..+++++.++|+|||.+++.
T Consensus 129 ~~l~~~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 129 FGLRNVPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred cccccCCCHHHHHHHHHHhccCCcEEEEE
Confidence 99999999999999999999999987764
No 44
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.47 E-value=3.8e-14 Score=122.81 Aligned_cols=92 Identities=13% Similarity=0.184 Sum_probs=73.2
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCeeEEEecccccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 210 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~ 210 (299)
..+|||+|||+|.........+.+|+|+|+|+.|++.++++ +.+...|+ ...+++ ++||+|+++.+++|
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~---~~~~~~-~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDI---NAAALN-EDYDFIFSTVVFMF 106 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccc---hhcccc-CCCCEEEEeccccc
Confidence 47899999999975444444578999999999999876432 55667777 555554 57999999999999
Q ss_pred cC--CHHHHHHHHHhhccCCcEEEE
Q 022305 211 LT--KPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 211 ~~--d~~~~l~ei~rvLkpGG~lii 233 (299)
++ +...++++++|+|||||++++
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 85 567899999999999998544
No 45
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.46 E-value=7.1e-13 Score=115.95 Aligned_cols=95 Identities=27% Similarity=0.426 Sum_probs=78.9
Q ss_pred cCCceeeccCcCCccc--cCCCCCC-CeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 137 YYSEVFPPSNTPGVSH--FPPGYKQ-DRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~--~~~~~~~-~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
...+|||+|||.|... +....+. .+++|+|+++.+++.+++ +++++.+|+ .++++++++||+|+++.+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~~D~i~~~~~ 115 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADA---EALPFEDNSFDAVTIAFG 115 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecch---hcCCCCCCcEEEEEEeee
Confidence 3568999999999632 2223333 689999999999987654 368889998 778887889999999999
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
++|.+++..+++++.++|||||.+++.
T Consensus 116 ~~~~~~~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 116 LRNVTDIQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred eCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence 999999999999999999999988764
No 46
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.44 E-value=7.1e-14 Score=120.11 Aligned_cols=99 Identities=16% Similarity=0.277 Sum_probs=87.6
Q ss_pred hcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCCC---CcEEEeccCCCCCCCCCCCCeeEEEecccccc
Q 022305 136 KYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 210 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~---~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~ 210 (299)
....+|.|+|||+|. ..+...++++.++|+|.|++||+.|+++ ++|..+|+ .... ++..+|+++++.+++|
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl---~~w~-p~~~~dllfaNAvlqW 104 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADL---RTWK-PEQPTDLLFANAVLQW 104 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccH---hhcC-CCCccchhhhhhhhhh
Confidence 356789999999996 5667788999999999999999998764 88999999 6654 3567999999999999
Q ss_pred cCCHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 211 LTKPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 211 ~~d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
++|-.+.|..+...|.|||++.+.+|+.
T Consensus 105 lpdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 105 LPDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred ccccHHHHHHHHHhhCCCceEEEECCCc
Confidence 9999999999999999999999998863
No 47
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.44 E-value=1.7e-13 Score=121.50 Aligned_cols=155 Identities=20% Similarity=0.294 Sum_probs=104.3
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCC-CCCCCeeEEEeccccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLP-FEDNSFDVITNVVSVD 209 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lp-f~~~~FD~Vis~~~l~ 209 (299)
..+|||+|||+|.........+.+++|+|+++.+++.++++ +++...|. ..++ ..+++||+|++..+++
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTA---EELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCH---HHhhhhcCCCccEEEEhhHhh
Confidence 45799999999974333333467899999999999876542 56677776 4443 3457899999999999
Q ss_pred ccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHH--------HHhhhhcCCCchhhh-----HHHHHHHhCCCCCCeee
Q 022305 210 YLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKA--------ISIWTSTGDADHVMI-----VGAYFHYAGGYEPPQAV 276 (299)
Q Consensus 210 ~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~--------~~~~~~~~~~~~~~~-----~~~~~~~~aGF~~v~~~ 276 (299)
|++++..+++++.++|+|||.++++.++....... ...+.......+..+ +...+ ..+||+.++..
T Consensus 126 ~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gf~~v~~~ 204 (233)
T PRK05134 126 HVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWL-RQAGLEVQDIT 204 (233)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHH-HHCCCeEeeee
Confidence 99999999999999999999999987664332111 111111111111112 12222 67999999888
Q ss_pred ecCCCC--------CCCCCeEEEEEEec
Q 022305 277 DISPNP--------GRSDPMYVVYSRKA 296 (299)
Q Consensus 277 ~~~~~~--------~~~~p~~~v~arK~ 296 (299)
.....+ ...+-.|...+||+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (233)
T PRK05134 205 GLHYNPLTNRWKLSDDVDVNYMLAARKP 232 (233)
T ss_pred eEEechhhcceeeccCccchhhhheecC
Confidence 765433 12344466667765
No 48
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.44 E-value=1.1e-13 Score=118.18 Aligned_cols=181 Identities=18% Similarity=0.278 Sum_probs=108.4
Q ss_pred HhhccCCCcccccCcchhhccccHHHH-HHh-hhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC-----
Q 022305 105 FQRFDESPDSLFYETPRFVTHIDDPAI-AAL-TKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV----- 177 (299)
Q Consensus 105 ~~~~d~~~~~~~y~~~~~~~~l~~~~~-~~l-~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~----- 177 (299)
.+++=...|.|-|....|-..-....+ ..| ...|.++||+|||.|...........+++++|+|+.+++.|++
T Consensus 9 l~~~la~~DPW~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~ 88 (201)
T PF05401_consen 9 LNRELANDDPWGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGL 88 (201)
T ss_dssp HHHHHTSSSGGGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-
T ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC
Confidence 333333455555544334332222233 335 4578899999999996444433345789999999999998875
Q ss_pred -CCcEEEeccCCCCCCCCCCCCeeEEEecccccccCC---HHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCC
Q 022305 178 -LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK---PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGD 253 (299)
Q Consensus 178 -~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d---~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~ 253 (299)
+++|++.|+ ... .++++||+|+++.+++|+.+ ...+++.+...|+|||.+|+.... ......|....+
T Consensus 89 ~~V~~~~~dv---p~~-~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r----d~~c~~wgh~~g 160 (201)
T PF05401_consen 89 PHVEWIQADV---PEF-WPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR----DANCRRWGHAAG 160 (201)
T ss_dssp SSEEEEES-T---TT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-----HHHHHHTT-S--
T ss_pred CCeEEEECcC---CCC-CCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec----CCcccccCcccc
Confidence 388999998 443 46789999999999999975 457899999999999999997542 334456765443
Q ss_pred CchhhhHHHHHHHhCCCCCCeeeecCCCCCCCCCeEEEEEEecCCC
Q 022305 254 ADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPMYVVYSRKASTA 299 (299)
Q Consensus 254 ~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~~~~p~~~v~arK~~~~ 299 (299)
.+ -+.+.|.+ -|.+++.+.+.... ..+-..++-.|||.+|
T Consensus 161 a~---tv~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 200 (201)
T PF05401_consen 161 AE---TVLEMLQE--HLTEVERVECRGGS-PNEDCLLARFRNPVSA 200 (201)
T ss_dssp HH---HHHHHHHH--HSEEEEEEEEE-SS-TTSEEEEEEEE--SSS
T ss_pred hH---HHHHHHHH--HhhheeEEEEcCCC-CCCceEeeeecCCcCC
Confidence 32 34444542 26677766664322 2234566667776543
No 49
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.42 E-value=1.6e-13 Score=125.85 Aligned_cols=93 Identities=14% Similarity=0.224 Sum_probs=75.3
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCCCCCCCCeeEEEecccccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 210 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~ 210 (299)
..+|||+|||+|...+.....+.+|+|+|+|+.|++.+++ .+++...|+ ...++ +++||+|++..+++|
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~---~~~~~-~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDI---NSASI-QEEYDFILSTVVLMF 196 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEech---hcccc-cCCccEEEEcchhhh
Confidence 3589999999997554444457899999999999987654 266777888 55555 678999999999999
Q ss_pred cC--CHHHHHHHHHhhccCCcEEEEE
Q 022305 211 LT--KPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 211 ~~--d~~~~l~ei~rvLkpGG~lii~ 234 (299)
++ +...+++++.++|||||++++.
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 86 5678999999999999986653
No 50
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.41 E-value=3.7e-13 Score=117.53 Aligned_cols=92 Identities=14% Similarity=0.252 Sum_probs=74.4
Q ss_pred cCCceeeccCcCCccc--cCCCCCCCeEEEEeCCHHHHHhcCCC---CcEEEeccCCCCCCCCCCCCeeEEEeccccccc
Q 022305 137 YYSEVFPPSNTPGVSH--FPPGYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 211 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~--~~~~~~~~~v~gvD~S~~ml~~a~~~---~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~ 211 (299)
...+|||+|||+|... +....++.+++|+|+|++|++.|+++ +++.++|+ .. |+++++||+|+++.+++|+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~---~~-~~~~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSL---FD-PFKDNFFDLVLTKGVLIHI 118 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeec---cC-CCCCCCEEEEEECChhhhC
Confidence 3468999999999733 23333578999999999999998763 67888998 56 8889999999999999999
Q ss_pred C--CHHHHHHHHHhhccCCcEEEEE
Q 022305 212 T--KPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 212 ~--d~~~~l~ei~rvLkpGG~lii~ 234 (299)
+ +..++++++.|+++ ++++|.
T Consensus 119 ~p~~~~~~l~el~r~~~--~~v~i~ 141 (204)
T TIGR03587 119 NPDNLPTAYRELYRCSN--RYILIA 141 (204)
T ss_pred CHHHHHHHHHHHHhhcC--cEEEEE
Confidence 5 46789999999983 566554
No 51
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.41 E-value=4.7e-13 Score=117.75 Aligned_cols=140 Identities=20% Similarity=0.282 Sum_probs=96.5
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCC-CCCeeEEEecccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFE-DNSFDVITNVVSV 208 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~-~~~FD~Vis~~~l 208 (299)
..+|||+|||+|.........+.+++|+|+|+.+++.+++ ++++...|+ .+++.. +++||+|++..++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSV---EDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCH---HHhhcCCCCCccEEEehhHH
Confidence 4689999999997444333345679999999999886654 256677777 555544 4789999999999
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHH--------hhhhcCCCchhhh-----HHHHHHHhCCCCCCee
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAIS--------IWTSTGDADHVMI-----VGAYFHYAGGYEPPQA 275 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~--------~~~~~~~~~~~~~-----~~~~~~~~aGF~~v~~ 275 (299)
+|+.++..+++++.++|+|||.+++...+......... .|.......+..+ +.+.+ .++||+.+++
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~G~~i~~~ 201 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWL-ESAGLRVKDV 201 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHH-HHcCCeeeee
Confidence 99999999999999999999999988776543221111 1111111111111 12222 6799999988
Q ss_pred eecCCC
Q 022305 276 VDISPN 281 (299)
Q Consensus 276 ~~~~~~ 281 (299)
....-.
T Consensus 202 ~~~~~~ 207 (224)
T TIGR01983 202 KGLVYN 207 (224)
T ss_pred eeEEee
Confidence 766443
No 52
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.41 E-value=1.9e-13 Score=119.15 Aligned_cols=114 Identities=14% Similarity=0.087 Sum_probs=83.2
Q ss_pred HHHhhhcCCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCC--CCCCC
Q 022305 131 IAALTKYYSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP--FEDNS 198 (299)
Q Consensus 131 ~~~l~~~~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lp--f~~~~ 198 (299)
.+.+.+...+|||+|||+|.. .+....++.+++|+|+|++|++.+++ +++++++|+. +.++ +++++
T Consensus 34 ~~~~~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~--~~l~~~~~~~~ 111 (202)
T PRK00121 34 AELFGNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAV--EVLLDMFPDGS 111 (202)
T ss_pred HHHcCCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHH--HHHHHHcCccc
Confidence 333333456899999999963 33344567899999999999987653 3678888862 2444 67889
Q ss_pred eeEEEecccccccC--------CHHHHHHHHHhhccCCcEEEEEecCcchHHHHHH
Q 022305 199 FDVITNVVSVDYLT--------KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAIS 246 (299)
Q Consensus 199 FD~Vis~~~l~~~~--------d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~ 246 (299)
||+|++++...+.. ....++++++++|||||.+++...+.........
T Consensus 112 ~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~ 167 (202)
T PRK00121 112 LDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLE 167 (202)
T ss_pred cceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHH
Confidence 99999987655432 1478999999999999999998776555444433
No 53
>PRK06922 hypothetical protein; Provisional
Probab=99.40 E-value=2.4e-13 Score=134.63 Aligned_cols=95 Identities=22% Similarity=0.250 Sum_probs=78.8
Q ss_pred CCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCC--CCCCCeeEEEecc
Q 022305 138 YSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLP--FEDNSFDVITNVV 206 (299)
Q Consensus 138 ~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lp--f~~~~FD~Vis~~ 206 (299)
..+|||+|||+|.. .+....++.+++|+|+|+.|++.++++ ++++++|. .++| +++++||+|+++.
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa---~dLp~~fedeSFDvVVsn~ 495 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDA---INLSSSFEKESVDTIVYSS 495 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcch---HhCccccCCCCEEEEEEch
Confidence 47899999999963 344446788999999999999877642 46688898 6777 8889999999999
Q ss_pred ccccc-------------CCHHHHHHHHHhhccCCcEEEEEe
Q 022305 207 SVDYL-------------TKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 207 ~l~~~-------------~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
++||+ .++.++|++++|+|||||.+++..
T Consensus 496 vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 496 ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 99875 256899999999999999998864
No 54
>PLN03075 nicotianamine synthase; Provisional
Probab=99.40 E-value=1.2e-12 Score=119.51 Aligned_cols=138 Identities=12% Similarity=0.097 Sum_probs=96.9
Q ss_pred cCCceeeccCcCC--ccccC--CCCCCCeEEEEeCCHHHHHhcCC----------CCcEEEeccCCCCCCCCCCCCeeEE
Q 022305 137 YYSEVFPPSNTPG--VSHFP--PGYKQDRIVGMGMNEEELKRNPV----------LTEYVVQDLNLNPKLPFEDNSFDVI 202 (299)
Q Consensus 137 ~~~~vLDiGcG~G--~~~~~--~~~~~~~v~gvD~S~~ml~~a~~----------~~~~~~~D~~~~~~lpf~~~~FD~V 202 (299)
...+|+|+|||.| +..+. ...++++++|+|+++++++.|++ +++|..+|+ .+.+-..+.||+|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da---~~~~~~l~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADV---MDVTESLKEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECch---hhcccccCCcCEE
Confidence 4578999999977 43332 34578899999999999986654 388999998 5543235779999
Q ss_pred Eeccccccc--CCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCC
Q 022305 203 TNVVSVDYL--TKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISP 280 (299)
Q Consensus 203 is~~~l~~~--~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~ 280 (299)
++. +++++ +++.++++++.+.|||||++++..... ........-++. .-.||+...++.-.
T Consensus 200 F~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G-----~r~~LYp~v~~~----------~~~gf~~~~~~~P~- 262 (296)
T PLN03075 200 FLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHG-----ARAFLYPVVDPC----------DLRGFEVLSVFHPT- 262 (296)
T ss_pred EEe-cccccccccHHHHHHHHHHhcCCCcEEEEecccc-----hHhhcCCCCChh----------hCCCeEEEEEECCC-
Confidence 999 88888 689999999999999999999975321 011111111111 12389876665432
Q ss_pred CCCCCCCeEEEEEEecC
Q 022305 281 NPGRSDPMYVVYSRKAS 297 (299)
Q Consensus 281 ~~~~~~p~~~v~arK~~ 297 (299)
..--.-+|++||.+
T Consensus 263 ---~~v~Nsvi~~r~~~ 276 (296)
T PLN03075 263 ---DEVINSVIIARKPG 276 (296)
T ss_pred ---CCceeeEEEEEeec
Confidence 22355789999975
No 55
>PRK04266 fibrillarin; Provisional
Probab=99.39 E-value=4.9e-12 Score=112.09 Aligned_cols=142 Identities=18% Similarity=0.157 Sum_probs=88.3
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHH----hcC--CCCcEEEeccCCCC-CCCCCCCCeeEEEeccc
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELK----RNP--VLTEYVVQDLNLNP-KLPFEDNSFDVITNVVS 207 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~----~a~--~~~~~~~~D~~~~~-~lpf~~~~FD~Vis~~~ 207 (299)
...+|||+|||+|. ..+....+..+|+|+|++++|++ .++ .++.++.+|+.... ..++. ++||+|++.
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d-- 148 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIYQD-- 148 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEEEC--
Confidence 44689999999997 22233323468999999999887 333 24788888983100 01233 569999854
Q ss_pred ccccCCH---HHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCCCC
Q 022305 208 VDYLTKP---IEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGR 284 (299)
Q Consensus 208 l~~~~d~---~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~~ 284 (299)
+.++ ..+++++.|+|||||.++|.++... ..|.... ........+.+ .++||+.++.++..+-.
T Consensus 149 ---~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~------~d~~~~~-~~~~~~~~~~l-~~aGF~~i~~~~l~p~~-- 215 (226)
T PRK04266 149 ---VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARS------IDVTKDP-KEIFKEEIRKL-EEGGFEILEVVDLEPYH-- 215 (226)
T ss_pred ---CCChhHHHHHHHHHHHhcCCCcEEEEEEeccc------ccCcCCH-HHHHHHHHHHH-HHcCCeEEEEEcCCCCc--
Confidence 3333 3468999999999999999755321 0111100 01111111223 56899999998876432
Q ss_pred CCCeEEEEEEe
Q 022305 285 SDPMYVVYSRK 295 (299)
Q Consensus 285 ~~p~~~v~arK 295 (299)
...|.++++|
T Consensus 216 -~~h~~~v~~~ 225 (226)
T PRK04266 216 -KDHAAVVARK 225 (226)
T ss_pred -CCeEEEEEEc
Confidence 3567777776
No 56
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.39 E-value=2.6e-12 Score=110.14 Aligned_cols=91 Identities=16% Similarity=0.147 Sum_probs=70.8
Q ss_pred CCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 138 YSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
..+|||+|||+|...+ ....+..+|+|+|+|+.|++.+++ +++++.+|+ ++++ .+++||+|+|..
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~---~~~~-~~~~fD~I~s~~- 117 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRA---EDFQ-HEEQFDVITSRA- 117 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecch---hhcc-ccCCccEEEehh-
Confidence 4689999999997433 233456789999999998875532 378899998 6664 357899999975
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+.+...+++++.++|||||.+++...
T Consensus 118 ---~~~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 118 ---LASLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ---hhCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 34667888999999999999988643
No 57
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.38 E-value=2.3e-12 Score=110.74 Aligned_cols=136 Identities=13% Similarity=0.132 Sum_probs=94.2
Q ss_pred cCCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|.... ....++.+++++|+|+.|++.++++ ++++.+|. . .++ .++||+|++..
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~---~-~~~-~~~~D~v~~~~ 105 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEA---P-IEL-PGKADAIFIGG 105 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCc---h-hhc-CcCCCEEEECC
Confidence 44689999999997332 3344668999999999999877542 56666775 2 233 35799999986
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCC----
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNP---- 282 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~---- 282 (299)
..+ ....+++++.++|||||.+++........ ......+ ...||..+++..+.-..
T Consensus 106 ~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~----------------~~~~~~l-~~~g~~~~~~~~~~~~~~~~~ 165 (187)
T PRK08287 106 SGG---NLTAIIDWSLAHLHPGGRLVLTFILLENL----------------HSALAHL-EKCGVSELDCVQLQVSSLTPL 165 (187)
T ss_pred Ccc---CHHHHHHHHHHhcCCCeEEEEEEecHhhH----------------HHHHHHH-HHCCCCcceEEEEEEEeeeEc
Confidence 654 45678999999999999998865321111 1112233 45889888776653321
Q ss_pred ------CCCCCeEEEEEEecC
Q 022305 283 ------GRSDPMYVVYSRKAS 297 (299)
Q Consensus 283 ------~~~~p~~~v~arK~~ 297 (299)
+...|.+++++.|+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~ 186 (187)
T PRK08287 166 GAGHYFKPNNPTFIISCQKEE 186 (187)
T ss_pred CcceeeccCCCEEEEEEEcCC
Confidence 345799999999954
No 58
>PRK06202 hypothetical protein; Provisional
Probab=99.37 E-value=1.2e-12 Score=116.17 Aligned_cols=95 Identities=9% Similarity=0.039 Sum_probs=73.9
Q ss_pred cCCceeeccCcCCccccCC------CCCCCeEEEEeCCHHHHHhcCCC-----CcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGVSHFPP------GYKQDRIVGMGMNEEELKRNPVL-----TEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~------~~~~~~v~gvD~S~~ml~~a~~~-----~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
...+|||+|||+|...... ..++.+++|+|+|++|++.|+++ +++.+.+. ..+++++++||+|+|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~---~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVS---DELVAEGERFDVVTSN 136 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEec---ccccccCCCccEEEEC
Confidence 3468999999999632211 12346999999999999987764 56777777 6777778899999999
Q ss_pred ccccccCCH--HHHHHHHHhhccCCcEEEEEec
Q 022305 206 VSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 206 ~~l~~~~d~--~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.++||++++ ..++++++|++| |.+++...
T Consensus 137 ~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl 167 (232)
T PRK06202 137 HFLHHLDDAEVVRLLADSAALAR--RLVLHNDL 167 (232)
T ss_pred CeeecCChHHHHHHHHHHHHhcC--eeEEEecc
Confidence 999999875 579999999998 44555433
No 59
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.34 E-value=2.1e-12 Score=113.63 Aligned_cols=90 Identities=12% Similarity=0.140 Sum_probs=71.4
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
..++||+|||+|.........+.+++|+|+|++|++.+++ ++++.++|+ ..++ ++||+|++..++
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~---~~fD~ii~~~~l 129 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDL---LSLC---GEFDIVVCMDVL 129 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCh---hhCC---CCcCEEEEhhHH
Confidence 4689999999997444333346799999999999987654 367888888 6655 789999999999
Q ss_pred cccC--CHHHHHHHHHhhccCCcEEEE
Q 022305 209 DYLT--KPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 209 ~~~~--d~~~~l~ei~rvLkpGG~lii 233 (299)
+|++ ++..+++++.+++++++.+.+
T Consensus 130 ~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 130 IHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred HhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 9985 467899999999987655544
No 60
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.33 E-value=1.3e-12 Score=127.70 Aligned_cols=97 Identities=21% Similarity=0.252 Sum_probs=78.3
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCCCeeEEEeccccccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 211 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~ 211 (299)
..+|||+|||+|...........+|+|+|+|+.|++.+++ +++++++|+.. ..+++++++||+|++..+++|+
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~-~~~~~~~~~fD~I~~~~~l~~l 116 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTS-PDLNISDGSVDLIFSNWLLMYL 116 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccc-cccCCCCCCEEEEehhhhHHhC
Confidence 3589999999997433333335799999999999987642 36788899821 2467888999999999999999
Q ss_pred CC--HHHHHHHHHhhccCCcEEEEEe
Q 022305 212 TK--PIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 212 ~d--~~~~l~ei~rvLkpGG~lii~~ 235 (299)
++ ..+++++++|+|||||.+++..
T Consensus 117 ~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 117 SDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 86 5789999999999999998864
No 61
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.32 E-value=7.9e-13 Score=120.28 Aligned_cols=95 Identities=21% Similarity=0.243 Sum_probs=67.6
Q ss_pred hcCCceeeccCcCCccccCC-CCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 136 KYYSEVFPPSNTPGVSHFPP-GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~-~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
+...+|||+|||.|...+.. ...+++|+|+.+|+++.+.+++ ++++...|. .+++. +||.|+|.
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~---~~~~~---~fD~IvSi 134 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDY---RDLPG---KFDRIVSI 134 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-G---GG------S-SEEEEE
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeec---cccCC---CCCEEEEE
Confidence 34578999999988633322 2237899999999999987643 266788887 55543 89999999
Q ss_pred cccccc--CCHHHHHHHHHhhccCCcEEEEEec
Q 022305 206 VSVDYL--TKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 206 ~~l~~~--~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.+++|+ .+...+|+++.++|||||.+++...
T Consensus 135 ~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 135 EMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp SEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred echhhcChhHHHHHHHHHHHhcCCCcEEEEEec
Confidence 999999 4779999999999999999987643
No 62
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.32 E-value=1.9e-12 Score=112.21 Aligned_cols=149 Identities=20% Similarity=0.249 Sum_probs=106.6
Q ss_pred hhccccHHHHHHh---hhcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCCC------CcEEEeccCCCC
Q 022305 122 FVTHIDDPAIAAL---TKYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPVL------TEYVVQDLNLNP 190 (299)
Q Consensus 122 ~~~~l~~~~~~~l---~~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~------~~~~~~D~~~~~ 190 (299)
+.+.+...+.+++ ++.+..++|+||+-|. .++. ...-.+++-+|.|-.|++.++.- +.+.++|- +
T Consensus 54 lkeeig~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~-~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DE---E 129 (325)
T KOG2940|consen 54 LKEEIGDRLADRVFDCKKSFPTAFDIGCSLGAVKRHLR-GEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDE---E 129 (325)
T ss_pred HHHHHHHHHHHHHHHHhhhCcceeecccchhhhhHHHH-hcchhheeeeecchHHHHHhhccCCCceEEEEEecch---h
Confidence 4445555555554 5678899999999884 2222 22246899999999999987752 66788898 8
Q ss_pred CCCCCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHH------HhhhhcCCCchhhhHH---
Q 022305 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAI------SIWTSTGDADHVMIVG--- 261 (299)
Q Consensus 191 ~lpf~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~------~~~~~~~~~~~~~~~~--- 261 (299)
.++|.+++||+|+++.++||++|++..+.+++..|||+|.||-+.-....+.+.. ..-.+.+-..|+..+.
T Consensus 130 ~Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvr 209 (325)
T KOG2940|consen 130 FLDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVR 209 (325)
T ss_pred cccccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhh
Confidence 9999999999999999999999999999999999999999998755433332221 1112223334444333
Q ss_pred ---HHHHHhCCCCCCee
Q 022305 262 ---AYFHYAGGYEPPQA 275 (299)
Q Consensus 262 ---~~~~~~aGF~~v~~ 275 (299)
..+ ..+||..+.+
T Consensus 210 DiG~LL-~rAGF~m~tv 225 (325)
T KOG2940|consen 210 DIGNLL-TRAGFSMLTV 225 (325)
T ss_pred hhhhHH-hhcCccccee
Confidence 333 5599987644
No 63
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.32 E-value=1.8e-12 Score=123.44 Aligned_cols=94 Identities=21% Similarity=0.173 Sum_probs=74.3
Q ss_pred cCCceeeccCcCCcccc-CCCCCCCeEEEEeCCHHHHHhcCCC-----CcEEEeccCCCCCCCCCCCCeeEEEecccccc
Q 022305 137 YYSEVFPPSNTPGVSHF-PPGYKQDRIVGMGMNEEELKRNPVL-----TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 210 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~-~~~~~~~~v~gvD~S~~ml~~a~~~-----~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~ 210 (299)
...+|||+|||.|.... .....+.+|+|+|+|++|++.++++ +++...|. ..+ +++||+|++..+++|
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~---~~l---~~~fD~Ivs~~~~eh 240 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDY---RDL---NGQFDRIVSVGMFEH 240 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECch---hhc---CCCCCEEEEeCchhh
Confidence 44689999999996332 2222467999999999999987764 45666676 444 478999999999999
Q ss_pred cC--CHHHHHHHHHhhccCCcEEEEEec
Q 022305 211 LT--KPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 211 ~~--d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+. ++..+++++.++|||||.+++...
T Consensus 241 vg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 241 VGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred CChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 95 467999999999999999988754
No 64
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.32 E-value=1.5e-12 Score=112.77 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=79.8
Q ss_pred CCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCC---CCCCCeeEEEe
Q 022305 138 YSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP---FEDNSFDVITN 204 (299)
Q Consensus 138 ~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lp---f~~~~FD~Vis 204 (299)
..++||+|||+|.. .++...+..+++|+|+++.|++.+.+ +++++.+|+ ..++ +++++||.|++
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~---~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDA---NELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCH---HHHHHhhCCCCceeEEEE
Confidence 35899999999973 34455678899999999999987653 478899998 5543 55679999999
Q ss_pred cccccccCCH--------HHHHHHHHhhccCCcEEEEEecCcchHHHH
Q 022305 205 VVSVDYLTKP--------IEVFKEMCQVLKPGGLAIVSFSNRCFWTKA 244 (299)
Q Consensus 205 ~~~l~~~~d~--------~~~l~ei~rvLkpGG~lii~~~~~~~~~~~ 244 (299)
++...|.... ..+++++.|+|||||.+++.+.+.......
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~ 141 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDM 141 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHH
Confidence 8766554322 579999999999999999987665544443
No 65
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.30 E-value=5.3e-12 Score=110.91 Aligned_cols=94 Identities=15% Similarity=0.126 Sum_probs=74.9
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcC--------------------CCCcEEEeccCCCCCCCCC-C
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNP--------------------VLTEYVVQDLNLNPKLPFE-D 196 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~--------------------~~~~~~~~D~~~~~~lpf~-~ 196 (299)
..+|||+|||.|......+..+.+|+|+|+|+.+++.+. ..++++++|+ .+++.. .
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~---~~~~~~~~ 111 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDF---FALTAADL 111 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccC---CCCCcccC
Confidence 369999999999855555567899999999999998731 1367889999 666543 4
Q ss_pred CCeeEEEecccccccC--CHHHHHHHHHhhccCCcEEEEE
Q 022305 197 NSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 197 ~~FD~Vis~~~l~~~~--d~~~~l~ei~rvLkpGG~lii~ 234 (299)
+.||.|+-..+++|++ ....+++.+.++|||||++++.
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 5799999999999996 3467899999999999965443
No 66
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.29 E-value=1.2e-11 Score=108.32 Aligned_cols=96 Identities=17% Similarity=0.165 Sum_probs=71.1
Q ss_pred hcCCceeeccCcCCccc--cCCCC-CCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCC--------CCCCCCeeEEEe
Q 022305 136 KYYSEVFPPSNTPGVSH--FPPGY-KQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKL--------PFEDNSFDVITN 204 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~--~~~~~-~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~l--------pf~~~~FD~Vis 204 (299)
+...+|||+|||+|... +.... +...|+|||+++ |... ..++++++|+ ... ++.+++||+|+|
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~~~--~~v~~i~~D~---~~~~~~~~i~~~~~~~~~D~V~S 123 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MDPI--VGVDFLQGDF---RDELVLKALLERVGDSKVQVVMS 123 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-ccCC--CCcEEEecCC---CChHHHHHHHHHhCCCCCCEEec
Confidence 34468999999999632 22222 347999999998 4322 3488999999 554 266789999999
Q ss_pred cccccccCCH-----------HHHHHHHHhhccCCcEEEEEecC
Q 022305 205 VVSVDYLTKP-----------IEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 205 ~~~l~~~~d~-----------~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
..+.++..++ ..+|+++.++|||||.+++.+..
T Consensus 124 ~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 124 DMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred CCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 8877766432 46899999999999999986543
No 67
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.28 E-value=1.9e-11 Score=106.05 Aligned_cols=136 Identities=11% Similarity=0.082 Sum_probs=92.0
Q ss_pred cCCceeeccCcCCccccCC--C-CCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCC-CCCCCCCeeEEE
Q 022305 137 YYSEVFPPSNTPGVSHFPP--G-YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPK-LPFEDNSFDVIT 203 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~--~-~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~-lpf~~~~FD~Vi 203 (299)
...++||+|||+|...... . .+..+|+++|+|+.|++.+++ +++++.+|. .+ ++..++.||+|+
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~---~~~l~~~~~~~D~V~ 116 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEA---PEILFTINEKFDRIF 116 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEech---hhhHhhcCCCCCEEE
Confidence 3468999999999633321 1 245799999999999986543 356777787 44 333346899999
Q ss_pred ecccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCC-
Q 022305 204 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNP- 282 (299)
Q Consensus 204 s~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~- 282 (299)
+.. ...++..+++++.++|||||.+++......... -....+ +..|| .+++..+....
T Consensus 117 ~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~----------------~~~~~l-~~~g~-~~~~~~~~~~~~ 175 (198)
T PRK00377 117 IGG---GSEKLKEIISASWEIIKKGGRIVIDAILLETVN----------------NALSAL-ENIGF-NLEITEVIIAKG 175 (198)
T ss_pred ECC---CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHH----------------HHHHHH-HHcCC-CeEEEEEehhhc
Confidence 864 345788999999999999999998655322211 112222 34777 56666653321
Q ss_pred ---------CCCCCeEEEEEEec
Q 022305 283 ---------GRSDPMYVVYSRKA 296 (299)
Q Consensus 283 ---------~~~~p~~~v~arK~ 296 (299)
....|.++++++|+
T Consensus 176 ~~~~~~~~~~~~npv~~~~~~~~ 198 (198)
T PRK00377 176 MKTKVGTAMMTRNPIFIISGEKQ 198 (198)
T ss_pred ccccCCcEeecCCCEEEEEEecC
Confidence 13479999999884
No 68
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.28 E-value=1.3e-11 Score=105.35 Aligned_cols=94 Identities=22% Similarity=0.140 Sum_probs=71.4
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCeeEEEecccccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 210 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~ 210 (299)
..+|||+|||+|.........+.+++|+|+|++|++.++++ ++++.+|. ...+ .++||+|+++..+++
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDL---FKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccc---cccc--CCcccEEEECCCCCC
Confidence 36899999999974443333344899999999999877653 56677787 4433 458999999987766
Q ss_pred cCC---------------------HHHHHHHHHhhccCCcEEEEEec
Q 022305 211 LTK---------------------PIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 211 ~~d---------------------~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.++ ..++++++.|+|||||.+++..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 643 35679999999999999888654
No 69
>PTZ00146 fibrillarin; Provisional
Probab=99.28 E-value=3.7e-11 Score=109.43 Aligned_cols=147 Identities=18% Similarity=0.215 Sum_probs=90.2
Q ss_pred hhccccHHHHHHhh----hcCCceeeccCcCCc--cccCCCC-CCCeEEEEeCCHH----HHHhcCC--CCcEEEeccCC
Q 022305 122 FVTHIDDPAIAALT----KYYSEVFPPSNTPGV--SHFPPGY-KQDRIVGMGMNEE----ELKRNPV--LTEYVVQDLNL 188 (299)
Q Consensus 122 ~~~~l~~~~~~~l~----~~~~~vLDiGcG~G~--~~~~~~~-~~~~v~gvD~S~~----ml~~a~~--~~~~~~~D~~~ 188 (299)
+.+.|...++.-+. +.-.+|||+|||+|. .+++... +...|+++|+|+. |++.+++ ++.++..|+..
T Consensus 113 ~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~ 192 (293)
T PTZ00146 113 FRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARY 192 (293)
T ss_pred cccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccC
Confidence 34445444433332 334689999999997 3333332 2468999999986 5566543 58889999832
Q ss_pred CCCCCCCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHH--HHHHH
Q 022305 189 NPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVG--AYFHY 266 (299)
Q Consensus 189 ~~~lpf~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 266 (299)
...+....++||+|++... ..++...++.++.++|||||.|+|.+...+ . ....+.+..|-. +.+ +
T Consensus 193 p~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ika~~-------i--d~g~~pe~~f~~ev~~L-~ 260 (293)
T PTZ00146 193 PQKYRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIISIKANC-------I--DSTAKPEVVFASEVQKL-K 260 (293)
T ss_pred hhhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEEEeccc-------c--ccCCCHHHHHHHHHHHH-H
Confidence 1122333468999999864 233444666799999999999999644322 0 111111111111 223 6
Q ss_pred hCCCCCCeeeecCC
Q 022305 267 AGGYEPPQAVDISP 280 (299)
Q Consensus 267 ~aGF~~v~~~~~~~ 280 (299)
++||++++.+++.|
T Consensus 261 ~~GF~~~e~v~L~P 274 (293)
T PTZ00146 261 KEGLKPKEQLTLEP 274 (293)
T ss_pred HcCCceEEEEecCC
Confidence 68999999888754
No 70
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.28 E-value=3.8e-12 Score=111.23 Aligned_cols=94 Identities=18% Similarity=0.247 Sum_probs=70.0
Q ss_pred CceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC--CcEEEec--cCCCCCCCCC--CCCeeEEEecccccccC
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL--TEYVVQD--LNLNPKLPFE--DNSFDVITNVVSVDYLT 212 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~--~~~~~~D--~~~~~~lpf~--~~~FD~Vis~~~l~~~~ 212 (299)
..++|+|||+|......+-...+|+|+|+|+.||+.+++. +.+...- +..++..++. +++.|+|+|..++||+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF- 113 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF- 113 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh-
Confidence 4789999999965554444457999999999999999885 2221111 1011334444 8999999999999999
Q ss_pred CHHHHHHHHHhhccCCc-EEEE
Q 022305 213 KPIEVFKEMCQVLKPGG-LAIV 233 (299)
Q Consensus 213 d~~~~l~ei~rvLkpGG-~lii 233 (299)
|.++++++++|+||+.| .+.+
T Consensus 114 dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 114 DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred chHHHHHHHHHHcCCCCCEEEE
Confidence 89999999999998877 4444
No 71
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.28 E-value=6.8e-12 Score=99.50 Aligned_cols=93 Identities=17% Similarity=0.098 Sum_probs=70.7
Q ss_pred CCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCC-CCCCCCCeeEEEecc
Q 022305 138 YSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPK-LPFEDNSFDVITNVV 206 (299)
Q Consensus 138 ~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~-lpf~~~~FD~Vis~~ 206 (299)
..++||+|||+|.. .+....+..+++|+|+|+.+++.+++ +++++..|+ .. ++...++||+|++..
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDA---PEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccc---cccChhhcCCCCEEEECC
Confidence 46899999999973 33334456899999999999987654 256677776 33 334446899999977
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
..+ ...++++++++.|||||.+++.+.
T Consensus 97 ~~~---~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 97 SGG---LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred cch---hHHHHHHHHHHHcCCCCEEEEEec
Confidence 554 346899999999999999999764
No 72
>PRK14967 putative methyltransferase; Provisional
Probab=99.27 E-value=2.7e-11 Score=107.04 Aligned_cols=97 Identities=12% Similarity=0.130 Sum_probs=68.1
Q ss_pred CCceeeccCcCCccccCCCC-CCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGY-KQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~-~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
..+|||+|||+|........ ...+++|+|+|+.|++.++++ ++++.+|+ .. .+++++||+|+++--..
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~---~~-~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDW---AR-AVEFRPFDVVVSNPPYV 112 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECch---hh-hccCCCeeEEEECCCCC
Confidence 46899999999973332222 234999999999999866542 55677777 33 34567899999973221
Q ss_pred ccC---------------------CHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 210 YLT---------------------KPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 210 ~~~---------------------d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
... ....+++++.++|||||.+++..+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 110 14568889999999999988865554
No 73
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.26 E-value=1.1e-11 Score=112.05 Aligned_cols=136 Identities=18% Similarity=0.216 Sum_probs=92.7
Q ss_pred hcCCceeeccCcCCc-cccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 136 KYYSEVFPPSNTPGV-SHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~-~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
+...+|||+|||-|. ..+.....+.+|+|+++|+++.+.+++ ++++...|. ..+ ++.||-|+|.
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~---rd~---~e~fDrIvSv 144 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY---RDF---EEPFDRIVSV 144 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc---ccc---ccccceeeeh
Confidence 456799999999885 333333348999999999999987765 256777776 444 3449999999
Q ss_pred ccccccCC--HHHHHHHHHhhccCCcEEEEEe-cCcc----hHHHHHHhh-hhcCCCchhhhHHHHHHHhCCCCCCeeee
Q 022305 206 VSVDYLTK--PIEVFKEMCQVLKPGGLAIVSF-SNRC----FWTKAISIW-TSTGDADHVMIVGAYFHYAGGYEPPQAVD 277 (299)
Q Consensus 206 ~~l~~~~d--~~~~l~ei~rvLkpGG~lii~~-~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~aGF~~v~~~~ 277 (299)
..++|+.. .+.+|+.++++|+|||.+++.. ..+. .....+..+ ...+....+..+.... ..+||.......
T Consensus 145 gmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~-~~~~~~v~~~~~ 223 (283)
T COG2230 145 GMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELA-SEAGFVVLDVES 223 (283)
T ss_pred hhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHH-HhcCcEEehHhh
Confidence 99999964 8999999999999999777653 2222 222333332 2323333344444443 458888766544
Q ss_pred c
Q 022305 278 I 278 (299)
Q Consensus 278 ~ 278 (299)
.
T Consensus 224 ~ 224 (283)
T COG2230 224 L 224 (283)
T ss_pred h
Confidence 4
No 74
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.24 E-value=2.5e-11 Score=112.51 Aligned_cols=92 Identities=14% Similarity=0.187 Sum_probs=65.9
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC-------------CcEEEeccCCCCCCCCCCCCeeEEEe
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL-------------TEYVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~-------------~~~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
..+|||+|||+|...+.....+.+|+|+|+|+.|++.++++ ++|...|+ +.+ +++||+|+|
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl---~~l---~~~fD~Vv~ 218 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL---ESL---SGKYDTVTC 218 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch---hhc---CCCcCEEEE
Confidence 35899999999974444434478999999999999876553 34566666 433 578999999
Q ss_pred cccccccCCH--HHHHHHHHhhccCCcEEEEEecC
Q 022305 205 VVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 205 ~~~l~~~~d~--~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
..+++|+++. ..+++.+.+ +.+||. +|++..
T Consensus 219 ~~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~~p 251 (315)
T PLN02585 219 LDVLIHYPQDKADGMIAHLAS-LAEKRL-IISFAP 251 (315)
T ss_pred cCEEEecCHHHHHHHHHHHHh-hcCCEE-EEEeCC
Confidence 9999999763 346666665 455554 556544
No 75
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.23 E-value=6.1e-12 Score=108.26 Aligned_cols=93 Identities=16% Similarity=0.238 Sum_probs=72.9
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCCCCCCCCeeEEEecccccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 210 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~ 210 (299)
..++||+|||.|...+-.+..|..|+++|+|+..++...+ .++..+.|+ ....++ +.||+|++..+++|
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl---~~~~~~-~~yD~I~st~v~~f 106 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADL---NDFDFP-EEYDFIVSTVVFMF 106 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BG---CCBS-T-TTEEEEEEESSGGG
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecc---hhcccc-CCcCEEEEEEEecc
Confidence 4799999999998555555568999999999999986543 277888999 666665 67999999999999
Q ss_pred cC--CHHHHHHHHHhhccCCcEEEEE
Q 022305 211 LT--KPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 211 ~~--d~~~~l~ei~rvLkpGG~lii~ 234 (299)
++ ..+++++.|...++|||++++.
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 95 4578999999999999987774
No 76
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.22 E-value=1.7e-11 Score=108.25 Aligned_cols=86 Identities=9% Similarity=0.112 Sum_probs=64.6
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
..+|||+|||+|.........+.+++|+|+|+.|++.+++ ++++..+|+ + ..+++||+|++..++
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~---~~~~~fD~v~~~~~l 137 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL---E---SLLGRFDTVVCLDVL 137 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc---h---hccCCcCEEEEcchh
Confidence 4689999999997443333345679999999999987765 256666665 3 346889999999999
Q ss_pred cccC--CHHHHHHHHHhhccCCc
Q 022305 209 DYLT--KPIEVFKEMCQVLKPGG 229 (299)
Q Consensus 209 ~~~~--d~~~~l~ei~rvLkpGG 229 (299)
+|++ +...+++++.+.+++++
T Consensus 138 ~~~~~~~~~~~l~~l~~~~~~~~ 160 (230)
T PRK07580 138 IHYPQEDAARMLAHLASLTRGSL 160 (230)
T ss_pred hcCCHHHHHHHHHHHHhhcCCeE
Confidence 9986 44678899988775443
No 77
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.22 E-value=3.1e-11 Score=106.43 Aligned_cols=92 Identities=12% Similarity=0.089 Sum_probs=73.7
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcC--------------------CCCcEEEeccCCCCCCCCC-C
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNP--------------------VLTEYVVQDLNLNPKLPFE-D 196 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~--------------------~~~~~~~~D~~~~~~lpf~-~ 196 (299)
..+|||+|||.|.........+.+|+|||+|+.+++.+. ..+++.++|+ ..++.. .
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~---~~l~~~~~ 114 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDF---FALTAADL 114 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcc---cCCCcccC
Confidence 368999999999865555557899999999999998641 1367788998 666433 2
Q ss_pred CCeeEEEecccccccC--CHHHHHHHHHhhccCCcEEE
Q 022305 197 NSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAI 232 (299)
Q Consensus 197 ~~FD~Vis~~~l~~~~--d~~~~l~ei~rvLkpGG~li 232 (299)
..||+|+-..+++|++ ...++++.+.++|||||.++
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEE
Confidence 5899999999999996 44689999999999999543
No 78
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.22 E-value=4.2e-11 Score=110.75 Aligned_cols=92 Identities=8% Similarity=0.055 Sum_probs=72.9
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
...++||+|||+|. ..+...+++.+++++|+ +.+++.+++ +++++.+|+ .+.++++ +|+|++.
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~---~~~~~~~--~D~v~~~ 222 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDI---YKESYPE--ADAVLFC 222 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCc---cCCCCCC--CCEEEeE
Confidence 44689999999997 33455567889999997 788886643 377899998 5555543 6999999
Q ss_pred ccccccCCH--HHHHHHHHhhccCCcEEEEE
Q 022305 206 VSVDYLTKP--IEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 206 ~~l~~~~d~--~~~l~ei~rvLkpGG~lii~ 234 (299)
.++|+.++. .++|++++++|||||.++|.
T Consensus 223 ~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 223 RILYSANEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred hhhhcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999988654 57999999999999988765
No 79
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.21 E-value=3.2e-11 Score=105.31 Aligned_cols=91 Identities=12% Similarity=0.143 Sum_probs=69.3
Q ss_pred cCCceeeccCcCCccc--cCCCC-CCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEEe
Q 022305 137 YYSEVFPPSNTPGVSH--FPPGY-KQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~--~~~~~-~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
...+|||+|||+|... +.... +..+|+++|++++|++.++++ ++++.+|. ......+++||+|++
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~---~~~~~~~~~fD~Ii~ 148 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDG---KRGLEKHAPFDAIIV 148 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCc---ccCCccCCCccEEEE
Confidence 4468999999999632 22222 246999999999999876542 56788888 544445678999999
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
..++++++ .++.++|||||.+++.+.
T Consensus 149 ~~~~~~~~------~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 149 TAAASTIP------SALVRQLKDGGVLVIPVE 174 (205)
T ss_pred ccCcchhh------HHHHHhcCcCcEEEEEEc
Confidence 99988775 478899999999988654
No 80
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.17 E-value=4e-11 Score=107.82 Aligned_cols=131 Identities=15% Similarity=0.156 Sum_probs=82.5
Q ss_pred hcCCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCCCCcEEEe-ccCCCCCCCCCCCCeeEEEecccccccCC
Q 022305 136 KYYSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPVLTEYVVQ-DLNLNPKLPFEDNSFDVITNVVSVDYLTK 213 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~~~~~~~~-D~~~~~~lpf~~~~FD~Vis~~~l~~~~d 213 (299)
....+|||+|||+|...+.....+ .+|+|+|+|+.|++.++++...... +. ..++..+.+||+|+++...+ .
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~---~~~~~~~~~fD~Vvani~~~---~ 191 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELN---VYLPQGDLKADVIVANILAN---P 191 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCce---EEEccCCCCcCEEEEcCcHH---H
Confidence 345789999999996433322233 4699999999999988765321111 11 11222233799999975433 2
Q ss_pred HHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCCCCCCCeEEEEE
Q 022305 214 PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPMYVVYS 293 (299)
Q Consensus 214 ~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~~~~p~~~v~a 293 (299)
...+++++.++|||||.++++..... ....+...+ ...||+.+++.. ...+..+++
T Consensus 192 ~~~l~~~~~~~LkpgG~lilsgi~~~----------------~~~~v~~~l-~~~Gf~~~~~~~-------~~~W~~~~~ 247 (250)
T PRK00517 192 LLELAPDLARLLKPGGRLILSGILEE----------------QADEVLEAY-EEAGFTLDEVLE-------RGEWVALVG 247 (250)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECcHh----------------hHHHHHHHH-HHCCCEEEEEEE-------eCCEEEEEE
Confidence 46788999999999999998733211 111223333 448898776544 235667777
Q ss_pred Eec
Q 022305 294 RKA 296 (299)
Q Consensus 294 rK~ 296 (299)
+|+
T Consensus 248 ~~~ 250 (250)
T PRK00517 248 KKK 250 (250)
T ss_pred EeC
Confidence 763
No 81
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.15 E-value=7.9e-11 Score=110.09 Aligned_cols=100 Identities=19% Similarity=0.209 Sum_probs=77.4
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCCCCeeEEEeccc-
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVS- 207 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~- 207 (299)
....+||+|||+|+..+.....+.+++|+|+++.|++.++.+ +++..+|+ .++|+.+++||+|+++--
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~---~~l~~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDA---TKLPLSSESVDAIATDPPY 258 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecch---hcCCcccCCCCEEEECCCC
Confidence 345799999999985555555678999999999999866543 57888999 788888899999999621
Q ss_pred -----cc-c-cCC-HHHHHHHHHhhccCCcEEEEEecCcc
Q 022305 208 -----VD-Y-LTK-PIEVFKEMCQVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 208 -----l~-~-~~d-~~~~l~ei~rvLkpGG~lii~~~~~~ 239 (299)
.. + ..+ ..++++++.|+|||||.+++.+++..
T Consensus 259 g~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 259 GRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred cCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 11 1 112 47899999999999999988877643
No 82
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.14 E-value=1.1e-10 Score=107.93 Aligned_cols=103 Identities=13% Similarity=0.149 Sum_probs=72.9
Q ss_pred CCceeeccCcCCcc--ccCCCCC-CCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCC-CCCCCC----Cee
Q 022305 138 YSEVFPPSNTPGVS--HFPPGYK-QDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPK-LPFEDN----SFD 200 (299)
Q Consensus 138 ~~~vLDiGcG~G~~--~~~~~~~-~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~-lpf~~~----~FD 200 (299)
..+|||+|||+|.. .+....+ +.+++|+|+|++||+.+.++ +.++++|+ .+ +++... ...
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~---~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADF---TQPLALPPEPAAGRRL 140 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcc---cchhhhhcccccCCeE
Confidence 46799999999973 2333333 57899999999999876442 45678998 43 333332 334
Q ss_pred EEEecccccccC--CHHHHHHHHHhhccCCcEEEEEecCcchHHH
Q 022305 201 VITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTK 243 (299)
Q Consensus 201 ~Vis~~~l~~~~--d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~ 243 (299)
++++..++++++ +...+|++++++|+|||.++|.+........
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~~~~~ 185 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKDPAV 185 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCCCHHH
Confidence 555667788885 4567999999999999999998765444333
No 83
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.14 E-value=7.3e-11 Score=110.73 Aligned_cols=103 Identities=14% Similarity=0.110 Sum_probs=75.5
Q ss_pred HHHHhhh-cCCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCe
Q 022305 130 AIAALTK-YYSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSF 199 (299)
Q Consensus 130 ~~~~l~~-~~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~F 199 (299)
+++.+.. ...+|||+|||+|.. .+....+..+|+++|+|+.|++.++++ .+++..|. .. ..++.|
T Consensus 188 Ll~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~---~~--~~~~~f 262 (342)
T PRK09489 188 LLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNV---FS--DIKGRF 262 (342)
T ss_pred HHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccc---cc--ccCCCc
Confidence 3444432 346899999999963 334444667999999999999977652 44566665 22 235789
Q ss_pred eEEEeccccccc-----CCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 200 DVITNVVSVDYL-----TKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 200 D~Vis~~~l~~~-----~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
|+|+|+-.+|+. ....++++++.+.|||||.++|....
T Consensus 263 DlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 263 DMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred cEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 999999888763 24578999999999999999886543
No 84
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.14 E-value=1e-10 Score=99.18 Aligned_cols=105 Identities=19% Similarity=0.238 Sum_probs=73.8
Q ss_pred HHHhhh-cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCCCCe
Q 022305 131 IAALTK-YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSF 199 (299)
Q Consensus 131 ~~~l~~-~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~~~F 199 (299)
++.+.. ...++||+|||+|. ..+....+..+|+++|+|+.+++.++++ ++++..|.. + +.++++|
T Consensus 24 ~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~--~--~~~~~~f 99 (170)
T PF05175_consen 24 LDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLF--E--ALPDGKF 99 (170)
T ss_dssp HHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTT--T--TCCTTCE
T ss_pred HHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccc--c--cccccce
Confidence 344433 55789999999996 3333444556799999999999977652 557777762 2 3347899
Q ss_pred eEEEecccccccCC-----HHHHHHHHHhhccCCcEEEEEecCcc
Q 022305 200 DVITNVVSVDYLTK-----PIEVFKEMCQVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 200 D~Vis~~~l~~~~d-----~~~~l~ei~rvLkpGG~lii~~~~~~ 239 (299)
|+|+|+-=++.-.+ ..+++++..+.|||||.+++......
T Consensus 100 D~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~ 144 (170)
T PF05175_consen 100 DLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHL 144 (170)
T ss_dssp EEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred eEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCC
Confidence 99999865444433 47889999999999998877655433
No 85
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.14 E-value=2.4e-10 Score=98.93 Aligned_cols=96 Identities=17% Similarity=0.081 Sum_probs=68.1
Q ss_pred cCCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|...+ ....++.+|+++|+|++|++.+++ +++++.+|+. +.++.....+|.++...
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~--~~~~~~~~~~d~v~~~~ 117 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAP--ECLAQLAPAPDRVCIEG 117 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchH--HHHhhCCCCCCEEEEEC
Confidence 34689999999997332 223456899999999999987654 2567777772 12222223467665432
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
..+...+++++.++|||||.+++...+.
T Consensus 118 ----~~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 118 ----GRPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred ----CcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 2466899999999999999999987653
No 86
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.13 E-value=7.4e-11 Score=107.01 Aligned_cols=126 Identities=18% Similarity=0.260 Sum_probs=95.4
Q ss_pred hhccccHHHHHHhhhcCCceeeccCcCCccccCCCCC-CCeEEEEeCCHHHHHhcCCC--------------CcEEEecc
Q 022305 122 FVTHIDDPAIAALTKYYSEVFPPSNTPGVSHFPPGYK-QDRIVGMGMNEEELKRNPVL--------------TEYVVQDL 186 (299)
Q Consensus 122 ~~~~l~~~~~~~l~~~~~~vLDiGcG~G~~~~~~~~~-~~~v~gvD~S~~ml~~a~~~--------------~~~~~~D~ 186 (299)
+...+...+|...++....++++|||-|...+-.... -..++|+||++..+++|+++ +.|+.+|.
T Consensus 102 fNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc 181 (389)
T KOG1975|consen 102 FNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADC 181 (389)
T ss_pred hhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEecc
Confidence 4444555667777888889999999987655443333 36899999999999988763 56888886
Q ss_pred CC---CCCCCCCCCCeeEEEeccccccc----CCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHh
Q 022305 187 NL---NPKLPFEDNSFDVITNVVSVDYL----TKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISI 247 (299)
Q Consensus 187 ~~---~~~lpf~~~~FD~Vis~~~l~~~----~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~ 247 (299)
.. .+.+++.+.+||+|-|-+++||. .....+|+++.+.|||||+||-++|+.....+.+..
T Consensus 182 ~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~ 249 (389)
T KOG1975|consen 182 FKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRA 249 (389)
T ss_pred chhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHh
Confidence 32 13346667779999999999986 245678999999999999999999997766554433
No 87
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.13 E-value=8.6e-11 Score=111.08 Aligned_cols=104 Identities=16% Similarity=0.173 Sum_probs=80.2
Q ss_pred CCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCC--CCCCCCeeEEEec
Q 022305 138 YSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKL--PFEDNSFDVITNV 205 (299)
Q Consensus 138 ~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~l--pf~~~~FD~Vis~ 205 (299)
...+||+|||+|. ..++...+...++|+|+++.|++.+.+ ++.++.+|+ ..+ .++++++|.|+++
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA---~~ll~~~~~~s~D~I~ln 199 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDA---RLLLELLPSNSVEKIFVH 199 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH---HHhhhhCCCCceeEEEEe
Confidence 3579999999997 444555678899999999999876543 377888898 443 4788999999987
Q ss_pred ccccccCCH------HHHHHHHHhhccCCcEEEEEecCcchHHHH
Q 022305 206 VSVDYLTKP------IEVFKEMCQVLKPGGLAIVSFSNRCFWTKA 244 (299)
Q Consensus 206 ~~l~~~~d~------~~~l~ei~rvLkpGG~lii~~~~~~~~~~~ 244 (299)
+...|.... ..+++++.|+|||||.+.+.+.+.......
T Consensus 200 FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~ 244 (390)
T PRK14121 200 FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFS 244 (390)
T ss_pred CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHH
Confidence 655554332 589999999999999999987765544443
No 88
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.12 E-value=2.8e-10 Score=101.65 Aligned_cols=125 Identities=19% Similarity=0.272 Sum_probs=83.6
Q ss_pred HHHhhhcCCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCee
Q 022305 131 IAALTKYYSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFD 200 (299)
Q Consensus 131 ~~~l~~~~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD 200 (299)
++.+.....+|||+|||+|.. .+....+..+++|+|+|+.+++.+++ +++++.+|+ .. ++++++||
T Consensus 81 l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~---~~-~~~~~~fD 156 (251)
T TIGR03534 81 LERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDW---FE-PLPGGKFD 156 (251)
T ss_pred HHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch---hc-cCcCCcee
Confidence 333333345899999999973 23333456799999999999997764 267788887 43 45678999
Q ss_pred EEEeccccc------ccC--------------------CHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCC
Q 022305 201 VITNVVSVD------YLT--------------------KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDA 254 (299)
Q Consensus 201 ~Vis~~~l~------~~~--------------------d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~ 254 (299)
+|+++--.. .+. ....+++++.++|||||.+++....
T Consensus 157 ~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~----------------- 219 (251)
T TIGR03534 157 LIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY----------------- 219 (251)
T ss_pred EEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc-----------------
Confidence 999853211 111 1246789999999999999987532
Q ss_pred chhhhHHHHHHHhCCCCCCeeee
Q 022305 255 DHVMIVGAYFHYAGGYEPPQAVD 277 (299)
Q Consensus 255 ~~~~~~~~~~~~~aGF~~v~~~~ 277 (299)
.+...+.+++. .+||+.+++..
T Consensus 220 ~~~~~~~~~l~-~~gf~~v~~~~ 241 (251)
T TIGR03534 220 DQGEAVRALFE-AAGFADVETRK 241 (251)
T ss_pred cHHHHHHHHHH-hCCCCceEEEe
Confidence 11123344453 47898777643
No 89
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.11 E-value=1.4e-10 Score=106.49 Aligned_cols=98 Identities=16% Similarity=0.214 Sum_probs=69.1
Q ss_pred HHHhhhcCCceeeccCcCCccccCC-CCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCee
Q 022305 131 IAALTKYYSEVFPPSNTPGVSHFPP-GYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFD 200 (299)
Q Consensus 131 ~~~l~~~~~~vLDiGcG~G~~~~~~-~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD 200 (299)
++.+.....+|||+|||+|...+.. .....+|+|+|+|+.|++.++++ +.+...+. .+..+++||
T Consensus 153 l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~-----~~~~~~~fD 227 (288)
T TIGR00406 153 LEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL-----EQPIEGKAD 227 (288)
T ss_pred HHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc-----ccccCCCce
Confidence 3333344578999999999643332 22345899999999999987764 12222222 234467899
Q ss_pred EEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 201 VITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 201 ~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+|+++...++ ...++.++.++|||||+++++..
T Consensus 228 lVvan~~~~~---l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 228 VIVANILAEV---IKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred EEEEecCHHH---HHHHHHHHHHHcCCCcEEEEEeC
Confidence 9999865443 46789999999999999998743
No 90
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.11 E-value=4.8e-10 Score=99.74 Aligned_cols=151 Identities=17% Similarity=0.197 Sum_probs=106.4
Q ss_pred cHHHHHHhhh--cCCceeeccCcCCcc-cc-CCCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCC
Q 022305 127 DDPAIAALTK--YYSEVFPPSNTPGVS-HF-PPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLP 193 (299)
Q Consensus 127 ~~~~~~~l~~--~~~~vLDiGcG~G~~-~~-~~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lp 193 (299)
|.-++..+.. ...+|||+|||+|.. .+ +......+++|||+.++|.+.|+++ ++++++|+ .++.
T Consensus 32 DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di---~~~~ 108 (248)
T COG4123 32 DAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADI---KEFL 108 (248)
T ss_pred HHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhH---HHhh
Confidence 4445555532 357899999999973 33 3333558999999999999988763 88899999 4443
Q ss_pred --CCCCCeeEEEeccc----------------cccc--CCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCC
Q 022305 194 --FEDNSFDVITNVVS----------------VDYL--TKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGD 253 (299)
Q Consensus 194 --f~~~~FD~Vis~~~----------------l~~~--~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~ 253 (299)
....+||+|+|+== -+|. -+.+.+++...++|||||.+.+..+...
T Consensus 109 ~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~er-------------- 174 (248)
T COG4123 109 KALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPER-------------- 174 (248)
T ss_pred hcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHH--------------
Confidence 34457999999811 1121 2467899999999999999988644211
Q ss_pred CchhhhHHHHHHHhCCCCCCeeeecCCCCCCCCCeEEEEEEecCC
Q 022305 254 ADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPMYVVYSRKAST 298 (299)
Q Consensus 254 ~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~~~~p~~~v~arK~~~ 298 (299)
..-+-+.+ ...+|.+-++..+-|.++...-..+|.++|.+.
T Consensus 175 ---l~ei~~~l-~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~~~ 215 (248)
T COG4123 175 ---LAEIIELL-KSYNLEPKRIQFVYPKIGKAANRVLVEAIKGGK 215 (248)
T ss_pred ---HHHHHHHH-HhcCCCceEEEEecCCCCCcceEEEEEEecCCC
Confidence 11111122 446899999999999888887888888888764
No 91
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.10 E-value=3.2e-10 Score=99.31 Aligned_cols=100 Identities=23% Similarity=0.268 Sum_probs=77.6
Q ss_pred ceeeccCcCCccccCCCC--CC--CeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCC-CCCCCCCCeeEEEeccc
Q 022305 140 EVFPPSNTPGVSHFPPGY--KQ--DRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNP-KLPFEDNSFDVITNVVS 207 (299)
Q Consensus 140 ~vLDiGcG~G~~~~~~~~--~~--~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~-~lpf~~~~FD~Vis~~~ 207 (299)
+||++|||.|...++... ++ -.++++|.|+.+++..+++ +...+.|+.... .-|.+.+++|+|++.++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 799999999986665433 22 6899999999999976653 445566663322 33577899999999999
Q ss_pred ccccC--CHHHHHHHHHhhccCCcEEEEEecCcc
Q 022305 208 VDYLT--KPIEVFKEMCQVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 208 l~~~~--d~~~~l~ei~rvLkpGG~lii~~~~~~ 239 (299)
|.-++ ....++.+++++|||||.+++-.-...
T Consensus 154 LSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~ 187 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRY 187 (264)
T ss_pred EeccChHHHHHHHHHHHHHhCCCcEEEEeecccc
Confidence 98874 678999999999999999998754433
No 92
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.10 E-value=2.4e-10 Score=85.93 Aligned_cols=92 Identities=23% Similarity=0.328 Sum_probs=73.4
Q ss_pred ceeeccCcCCccccCCC-CCCCeEEEEeCCHHHHHhcC--------CCCcEEEeccCCCCCCCC-CCCCeeEEEeccccc
Q 022305 140 EVFPPSNTPGVSHFPPG-YKQDRIVGMGMNEEELKRNP--------VLTEYVVQDLNLNPKLPF-EDNSFDVITNVVSVD 209 (299)
Q Consensus 140 ~vLDiGcG~G~~~~~~~-~~~~~v~gvD~S~~ml~~a~--------~~~~~~~~D~~~~~~lpf-~~~~FD~Vis~~~l~ 209 (299)
+++|+|||.|....... ....+++++|+++.+++.++ ..++++..|. ..... ..++||+|++..+++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDA---EELPPEADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcCh---hhhccccCCceEEEEEcccee
Confidence 47999999996332222 35689999999999987665 1367888888 44442 567899999999999
Q ss_pred c-cCCHHHHHHHHHhhccCCcEEEEE
Q 022305 210 Y-LTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 210 ~-~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
+ ..+...+++.+.+.|||||.++++
T Consensus 78 ~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 9 778899999999999999999876
No 93
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.10 E-value=8.2e-10 Score=94.93 Aligned_cols=95 Identities=16% Similarity=0.165 Sum_probs=67.0
Q ss_pred cCCceeeccCcCCccc--cCCCC-CCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCC--------CCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGVSH--FPPGY-KQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLP--------FEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~--~~~~~-~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lp--------f~~~~FD~Vis~ 205 (299)
...+|||+|||+|... +.... +..+++|+|+|+.+ ....++++.+|+ .+.+ +++++||+|++.
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---~~~~i~~~~~d~---~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---PIENVDFIRGDF---TDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---cCCCceEEEeeC---CChhHHHHHHHHhCCCCccEEEcC
Confidence 3468999999999622 22222 34689999999976 223578888898 4432 456789999986
Q ss_pred cccc--------cc---CCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 206 VSVD--------YL---TKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 206 ~~l~--------~~---~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
.+.+ |. .+...+++++.++|||||.+++....
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 4321 21 12368999999999999999986543
No 94
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.08 E-value=2.3e-10 Score=100.44 Aligned_cols=98 Identities=18% Similarity=0.134 Sum_probs=71.8
Q ss_pred HHHHhh-hcCCceeeccCcCCcccc--CCC-CCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCC
Q 022305 130 AIAALT-KYYSEVFPPSNTPGVSHF--PPG-YKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDN 197 (299)
Q Consensus 130 ~~~~l~-~~~~~vLDiGcG~G~~~~--~~~-~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~ 197 (299)
+++.+. +...+|||+|||+|.... ... .+..+|+++|++++|++.+++ +++++.+|. .....+++
T Consensus 68 ~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~---~~~~~~~~ 144 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDG---TLGYEENA 144 (212)
T ss_pred HHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc---ccCCCcCC
Confidence 344442 345789999999997332 222 134799999999999987765 377889998 55555678
Q ss_pred CeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 198 SFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 198 ~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.||+|++..+.++++ +++.+.|||||.+++...
T Consensus 145 ~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 145 PYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred CcCEEEECCCcccch------HHHHHhhCCCcEEEEEEc
Confidence 999999988766553 467779999999888654
No 95
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.07 E-value=2.7e-10 Score=107.93 Aligned_cols=102 Identities=15% Similarity=0.136 Sum_probs=73.1
Q ss_pred HHHHhhh-cCCceeeccCcCCccc--cCCCCCCCeEEEEeCCHHHHHhcCCC-----------CcEEEeccCCCCCCCCC
Q 022305 130 AIAALTK-YYSEVFPPSNTPGVSH--FPPGYKQDRIVGMGMNEEELKRNPVL-----------TEYVVQDLNLNPKLPFE 195 (299)
Q Consensus 130 ~~~~l~~-~~~~vLDiGcG~G~~~--~~~~~~~~~v~gvD~S~~ml~~a~~~-----------~~~~~~D~~~~~~lpf~ 195 (299)
+++.+.. ...+|||+|||+|... +....+..+|+++|+|+.|++.++++ ++++..|. .. .++
T Consensus 220 lL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~---l~-~~~ 295 (378)
T PRK15001 220 FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA---LS-GVE 295 (378)
T ss_pred HHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccc---cc-cCC
Confidence 3444433 2358999999999733 34455778999999999999977642 35666665 22 234
Q ss_pred CCCeeEEEeccccccc---C--CHHHHHHHHHhhccCCcEEEEEe
Q 022305 196 DNSFDVITNVVSVDYL---T--KPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 196 ~~~FD~Vis~~~l~~~---~--d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
+++||+|+|+--+|.. . ...+++++++++|||||.++|..
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 5689999998555543 2 23578999999999999988874
No 96
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.06 E-value=2.3e-10 Score=100.52 Aligned_cols=92 Identities=14% Similarity=0.064 Sum_probs=68.1
Q ss_pred hcCCceeeccCcCCccccC--CCC-CCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEe
Q 022305 136 KYYSEVFPPSNTPGVSHFP--PGY-KQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~--~~~-~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
+...+|||+|||+|..... ... ...+|+++|++++|++.|++ +++++.+|. .......++||+|++
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~---~~~~~~~~~fD~Ii~ 152 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDG---TQGWEPLAPYDRIYV 152 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCc---ccCCcccCCCCEEEE
Confidence 3457899999999973322 221 23579999999999987764 367888888 444444578999998
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.....+++ +.+.+.|||||.+++.+.
T Consensus 153 ~~~~~~~~------~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 153 TAAGPKIP------EALIDQLKEGGILVMPVG 178 (215)
T ss_pred cCCccccc------HHHHHhcCcCcEEEEEEc
Confidence 87665553 567889999999988654
No 97
>PRK14968 putative methyltransferase; Provisional
Probab=99.06 E-value=3e-10 Score=96.85 Aligned_cols=96 Identities=22% Similarity=0.266 Sum_probs=69.9
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC----------CcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~----------~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...++||+|||+|.........+.+++|+|+|++|++.++++ +.++.+|. .+ ++.+++||+|+++.
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~---~~-~~~~~~~d~vi~n~ 98 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDL---FE-PFRGDKFDVILFNP 98 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccc---cc-cccccCceEEEECC
Confidence 346899999999974333333378999999999999876331 66778887 33 34556899999875
Q ss_pred ccccc---------------------CCHHHHHHHHHhhccCCcEEEEEec
Q 022305 207 SVDYL---------------------TKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 207 ~l~~~---------------------~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.+.+. .....+++++.++|||||.+++..+
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 44321 1245689999999999998887654
No 98
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.05 E-value=2.7e-11 Score=95.55 Aligned_cols=96 Identities=21% Similarity=0.340 Sum_probs=70.7
Q ss_pred CceeeccCcCCccccCCCCC-CCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCC--CCCCCeeEEEecc
Q 022305 139 SEVFPPSNTPGVSHFPPGYK-QDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLP--FEDNSFDVITNVV 206 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~-~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lp--f~~~~FD~Vis~~ 206 (299)
.+|||+|||+|+..+..... ..+++|+|+++..++.++. +++++++|. .... +++++||+|+++-
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~---~~~~~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDA---RDLPEPLPDGKFDLIVTNP 78 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHH---HHHHHTCTTT-EEEEEE--
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECch---hhchhhccCceeEEEEECC
Confidence 47999999999833332222 4899999999999986654 368899998 5554 7789999999985
Q ss_pred cccccC--------CHHHHHHHHHhhccCCcEEEEEecC
Q 022305 207 SVDYLT--------KPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 207 ~l~~~~--------d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
-..... ....+++++.++|||||.+++.+++
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 443221 2357899999999999999887653
No 99
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.03 E-value=3.6e-10 Score=97.96 Aligned_cols=120 Identities=18% Similarity=0.318 Sum_probs=73.7
Q ss_pred ccccCcchhhccccHHHHHHhh-----hcCCceeeccCcCCc-----c-cc----CCCCC-CCeEEEEeCCHHHHHhcCC
Q 022305 114 SLFYETPRFVTHIDDPAIAALT-----KYYSEVFPPSNTPGV-----S-HF----PPGYK-QDRIVGMGMNEEELKRNPV 177 (299)
Q Consensus 114 ~~~y~~~~~~~~l~~~~~~~l~-----~~~~~vLDiGcG~G~-----~-~~----~~~~~-~~~v~gvD~S~~ml~~a~~ 177 (299)
+.|+..+.....+.+.++..+. ...-+|+.+||++|. . .+ ....+ ..+|+|+|+|+.+|++|++
T Consensus 3 T~FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 3 TYFFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp --TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 3466666566666555553222 134589999999996 1 11 11111 4699999999999997753
Q ss_pred ------------------------------------CCcEEEeccCCCCCCCCCCCCeeEEEecccccccCCH--HHHHH
Q 022305 178 ------------------------------------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP--IEVFK 219 (299)
Q Consensus 178 ------------------------------------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~--~~~l~ 219 (299)
.+.|...|+ .+.+...+.||+|+|.++|-|+++. .++++
T Consensus 83 G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL---~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~ 159 (196)
T PF01739_consen 83 GIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNL---LDPDPPFGRFDLIFCRNVLIYFDPETQQRVLR 159 (196)
T ss_dssp TEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--T---T-S------EEEEEE-SSGGGS-HHHHHHHHH
T ss_pred CCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEeccc---CCCCcccCCccEEEecCEEEEeCHHHHHHHHH
Confidence 167888888 4534456789999999999999754 68999
Q ss_pred HHHhhccCCcEEEEEec
Q 022305 220 EMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 220 ei~rvLkpGG~lii~~~ 236 (299)
.+++.|+|||++++...
T Consensus 160 ~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 160 RLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp HHGGGEEEEEEEEE-TT
T ss_pred HHHHHcCCCCEEEEecC
Confidence 99999999999999743
No 100
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.03 E-value=8e-10 Score=98.31 Aligned_cols=93 Identities=17% Similarity=0.190 Sum_probs=73.7
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCCCCCCCCeeEEEecccccccCCHHH
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIE 216 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~~ 216 (299)
..++||+|.|.|.-+...+..-.+|++.++|+.|..+-+++ .+ +.|. .++.-.+.+||+|.|.++|....+|..
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg~~--vl~~---~~w~~~~~~fDvIscLNvLDRc~~P~~ 169 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKGFT--VLDI---DDWQQTDFKFDVISCLNVLDRCDRPLT 169 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCCCe--EEeh---hhhhccCCceEEEeehhhhhccCCHHH
Confidence 35799999999974444444457899999999998876553 44 3344 334444678999999999999999999
Q ss_pred HHHHHHhhccCCcEEEEEe
Q 022305 217 VFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 217 ~l~ei~rvLkpGG~lii~~ 235 (299)
.|++|++.|+|+|.+++.+
T Consensus 170 LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 170 LLRDIRRALKPNGRLILAV 188 (265)
T ss_pred HHHHHHHHhCCCCEEEEEE
Confidence 9999999999999888863
No 101
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.03 E-value=4.4e-10 Score=102.99 Aligned_cols=95 Identities=14% Similarity=0.286 Sum_probs=70.8
Q ss_pred CceeeccCcCCccc--cCCCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEEec--
Q 022305 139 SEVFPPSNTPGVSH--FPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNV-- 205 (299)
Q Consensus 139 ~~vLDiGcG~G~~~--~~~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vis~-- 205 (299)
.+|||+|||+|... +....++.+++|+|+|+.+++.++++ ++++.+|+ .. ++++++||+|+|+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~---~~-~~~~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNL---FE-PLAGQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch---hc-cCcCCCccEEEECCC
Confidence 58999999999733 33334568999999999999876652 67888887 32 3445589999986
Q ss_pred -----------ccccccC------------CHHHHHHHHHhhccCCcEEEEEecC
Q 022305 206 -----------VSVDYLT------------KPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 206 -----------~~l~~~~------------d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
.++.|-+ ....+++++.+.|+|||.+++++.+
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 1233322 3457889999999999999998764
No 102
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.02 E-value=2.5e-10 Score=106.45 Aligned_cols=120 Identities=23% Similarity=0.276 Sum_probs=77.6
Q ss_pred hhccccHHHHHHhhh------cCCceeeccCcCCcccc-CCCCCCCeEEEEeCCHHHHHhcCCC----------------
Q 022305 122 FVTHIDDPAIAALTK------YYSEVFPPSNTPGVSHF-PPGYKQDRIVGMGMNEEELKRNPVL---------------- 178 (299)
Q Consensus 122 ~~~~l~~~~~~~l~~------~~~~vLDiGcG~G~~~~-~~~~~~~~v~gvD~S~~ml~~a~~~---------------- 178 (299)
+..++...+|..+.+ ...+|||+|||-|.... .....-..++|+|||...|+.|+++
T Consensus 41 fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~ 120 (331)
T PF03291_consen 41 FNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFD 120 (331)
T ss_dssp HHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEEC
T ss_pred HhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhcccccccccccc
Confidence 333444445666655 56789999999664222 1222347899999999999876542
Q ss_pred --CcEEEeccCCC---CCCCCCCCCeeEEEeccccccc-C---CHHHHHHHHHhhccCCcEEEEEecCcchH
Q 022305 179 --TEYVVQDLNLN---PKLPFEDNSFDVITNVVSVDYL-T---KPIEVFKEMCQVLKPGGLAIVSFSNRCFW 241 (299)
Q Consensus 179 --~~~~~~D~~~~---~~lpf~~~~FD~Vis~~~l~~~-~---d~~~~l~ei~rvLkpGG~lii~~~~~~~~ 241 (299)
..++.+|.... ..++.....||+|-|.++|||. . ....+|+++.+.|||||+||.++++...+
T Consensus 121 f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i 192 (331)
T PF03291_consen 121 FIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI 192 (331)
T ss_dssp CEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred chhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence 34566765210 1122333599999999999998 2 34569999999999999999999886544
No 103
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.98 E-value=6.5e-10 Score=101.89 Aligned_cols=96 Identities=11% Similarity=0.214 Sum_probs=69.6
Q ss_pred CCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEEec-
Q 022305 138 YSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNV- 205 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vis~- 205 (299)
..+|||+|||+|...+ ....++.+++|+|+|+.+++.|+++ ++++.+|+ .. ++++++||+|+++
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~---~~-~~~~~~fD~Iv~NP 197 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL---FA-ALPGRKYDLIVSNP 197 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch---hh-ccCCCCccEEEECC
Confidence 4689999999997333 3334568999999999999877642 56888887 22 2345689999986
Q ss_pred -----cccc-------ccC------------CHHHHHHHHHhhccCCcEEEEEecC
Q 022305 206 -----VSVD-------YLT------------KPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 206 -----~~l~-------~~~------------d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
..+. |-+ ....+++++.++|||||.+++++.+
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 1111 111 1256789999999999999998764
No 104
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.96 E-value=3.5e-09 Score=102.60 Aligned_cols=145 Identities=17% Similarity=0.186 Sum_probs=91.6
Q ss_pred cCCceeeccCcCCccc--cCCCC-CCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCC----CCCCCeeE
Q 022305 137 YYSEVFPPSNTPGVSH--FPPGY-KQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP----FEDNSFDV 201 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~--~~~~~-~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lp----f~~~~FD~ 201 (299)
...+|||+|||+|... +.... ..++|+++|+++.+++.+++ +++++.+|. ..++ +.+++||.
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~---~~~~~~~~~~~~~fD~ 328 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADS---RNLLELKPQWRGYFDR 328 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCCh---hhcccccccccccCCE
Confidence 3468999999999633 33222 24699999999999987654 267788888 5554 44678999
Q ss_pred EEec------ccccccCC----------------HHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhh
Q 022305 202 ITNV------VSVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMI 259 (299)
Q Consensus 202 Vis~------~~l~~~~d----------------~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (299)
|++. .++.+-++ ..++|.++.++|||||.++.++..-.. .+....
T Consensus 329 Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~-------------~Ene~~ 395 (434)
T PRK14901 329 ILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP-------------AENEAQ 395 (434)
T ss_pred EEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh-------------hhHHHH
Confidence 9952 34444443 357899999999999998887543111 011122
Q ss_pred HHHHHHHhCCCCCCeeee-cCCCCCCCCCeEEEEEEecC
Q 022305 260 VGAYFHYAGGYEPPQAVD-ISPNPGRSDPMYVVYSRKAS 297 (299)
Q Consensus 260 ~~~~~~~~aGF~~v~~~~-~~~~~~~~~p~~~v~arK~~ 297 (299)
+..++++..+|+...... +-|...+.|-+|+..-+|.+
T Consensus 396 v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l~k~~ 434 (434)
T PRK14901 396 IEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVLRKKS 434 (434)
T ss_pred HHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEEEeCC
Confidence 233333333454332111 23334467888888888753
No 105
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.96 E-value=1.4e-09 Score=96.15 Aligned_cols=94 Identities=17% Similarity=0.060 Sum_probs=75.3
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------------------CCcEEEeccCCCCCCCCC--
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------------------LTEYVVQDLNLNPKLPFE-- 195 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------------------~~~~~~~D~~~~~~lpf~-- 195 (299)
..+||.+|||.|.........+.+|+|+|+|+..++.+.+ .+++.++|+ .+++..
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~---f~l~~~~~ 120 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADI---FNLPKIAN 120 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccC---cCCCcccc
Confidence 4699999999997555555568899999999999987411 378999999 666532
Q ss_pred -CCCeeEEEecccccccC--CHHHHHHHHHhhccCCcEEEEE
Q 022305 196 -DNSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 196 -~~~FD~Vis~~~l~~~~--d~~~~l~ei~rvLkpGG~lii~ 234 (299)
.+.||+|+-..++++++ ...++.+.+.++|+|||.+++.
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 26899999999999996 3468999999999999966544
No 106
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.96 E-value=1.6e-09 Score=99.09 Aligned_cols=121 Identities=14% Similarity=0.228 Sum_probs=83.6
Q ss_pred CCcccccCcchhhccccHHHHHHhhhcCCceeeccCcCCc------cccCC----CCCCCeEEEEeCCHHHHHhcCCC--
Q 022305 111 SPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGV------SHFPP----GYKQDRIVGMGMNEEELKRNPVL-- 178 (299)
Q Consensus 111 ~~~~~~y~~~~~~~~l~~~~~~~l~~~~~~vLDiGcG~G~------~~~~~----~~~~~~v~gvD~S~~ml~~a~~~-- 178 (299)
...+.|+..+.....+.+.+... ...-+|+..||++|. ..+.. .....+|+|+|+|+.+|++|++.
T Consensus 91 ineT~FFRd~~~f~~L~~~~~~~--~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y 168 (287)
T PRK10611 91 TNLTAFFREAHHFPILAEHARRR--SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIY 168 (287)
T ss_pred CCCCCccCCcHHHHHHHHHHHhc--CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCC
Confidence 34566777765555554332211 123589999999996 11111 11146899999999999966431
Q ss_pred -------------------------------------CcEEEeccCCCCCCCCC-CCCeeEEEecccccccC--CHHHHH
Q 022305 179 -------------------------------------TEYVVQDLNLNPKLPFE-DNSFDVITNVVSVDYLT--KPIEVF 218 (299)
Q Consensus 179 -------------------------------------~~~~~~D~~~~~~lpf~-~~~FD~Vis~~~l~~~~--d~~~~l 218 (299)
+.|...|+ ...+++ .+.||+|+|.+++.|++ ...+++
T Consensus 169 ~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL---~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl 245 (287)
T PRK10611 169 RQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNL---LAKQWAVPGPFDAIFCRNVMIYFDKTTQERIL 245 (287)
T ss_pred CHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccC---CCCCCccCCCcceeeHhhHHhcCCHHHHHHHH
Confidence 45666666 343332 57899999999999995 467899
Q ss_pred HHHHhhccCCcEEEEEec
Q 022305 219 KEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 219 ~ei~rvLkpGG~lii~~~ 236 (299)
+.+++.|+|||++++...
T Consensus 246 ~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 246 RRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred HHHHHHhCCCcEEEEeCc
Confidence 999999999999988743
No 107
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.95 E-value=3.7e-09 Score=102.28 Aligned_cols=97 Identities=21% Similarity=0.353 Sum_probs=69.1
Q ss_pred cCCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCC--CCCCCeeEEEe-
Q 022305 137 YYSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLP--FEDNSFDVITN- 204 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lp--f~~~~FD~Vis- 204 (299)
...+|||+|||+|.. ++....++.+|+++|+|+.|++.++++ ++++++|+ ..++ +.+++||.|++
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~---~~~~~~~~~~~fD~Vl~D 320 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDA---RDPAQWWDGQPFDRILLD 320 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCc---ccchhhcccCCCCEEEEC
Confidence 456899999999963 333333447999999999999877553 56788888 5543 34678999994
Q ss_pred ---cc--ccc------ccCC----------HHHHHHHHHhhccCCcEEEEEec
Q 022305 205 ---VV--SVD------YLTK----------PIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 205 ---~~--~l~------~~~d----------~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+. ++. |... ..++|+++.++|||||.+++++.
T Consensus 321 ~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 321 APCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 22 111 2111 13689999999999999998764
No 108
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.95 E-value=2.8e-09 Score=93.44 Aligned_cols=154 Identities=14% Similarity=0.240 Sum_probs=96.7
Q ss_pred CCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCCCCcEEE------e-------------------------
Q 022305 138 YSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPVLTEYVV------Q------------------------- 184 (299)
Q Consensus 138 ~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~~~~~~~------~------------------------- 184 (299)
...+|||||.+|.. .++.......+.|+||.+..++.|++.+++.. .
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t 138 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFT 138 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccccc
Confidence 35799999999973 33334445679999999999998876422111 0
Q ss_pred -ccC-------------CCCCCCCCCCCeeEEEecccccccC------CHHHHHHHHHhhccCCcEEEEEecCcchHHHH
Q 022305 185 -DLN-------------LNPKLPFEDNSFDVITNVVSVDYLT------KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKA 244 (299)
Q Consensus 185 -D~~-------------~~~~lpf~~~~FD~Vis~~~l~~~~------d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~ 244 (299)
|+- .++-+.+....||+|+|..+-.|+. -+..+|+.+.+.|.|||++|++-..+..+.+.
T Consensus 139 ~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWksY~ka 218 (288)
T KOG2899|consen 139 TDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKSYKKA 218 (288)
T ss_pred ccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHHHHHH
Confidence 000 0012234557899999987766652 36789999999999999999986555555554
Q ss_pred HHhhhh-cCCCch----hhhHHHHHH-HhCCCCCCeeeecCC---CCCCCCCeEEE
Q 022305 245 ISIWTS-TGDADH----VMIVGAYFH-YAGGYEPPQAVDISP---NPGRSDPMYVV 291 (299)
Q Consensus 245 ~~~~~~-~~~~~~----~~~~~~~~~-~~aGF~~v~~~~~~~---~~~~~~p~~~v 291 (299)
...-.. ...+.. ...+++++. ..-||+.++-..... ..+...|+|+.
T Consensus 219 ar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~~~~~~~skgf~R~i~~y 274 (288)
T KOG2899|consen 219 ARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVEDLGLIVSAASKGFDRPILLY 274 (288)
T ss_pred HHHHHHhhcCccceecCHHHHHhhhhhhhhheeeeccccccccccCccccceeeee
Confidence 433311 122222 233445554 337898887666432 23556666654
No 109
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.94 E-value=1.3e-09 Score=95.42 Aligned_cols=91 Identities=13% Similarity=-0.015 Sum_probs=66.8
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
...+|||+|||+|...........+++++|+++++++.+++ +++++.+|. .......++||+|++...+
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~I~~~~~~ 154 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDG---WKGWPAYAPFDRILVTAAA 154 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCc---ccCCCcCCCcCEEEEccCc
Confidence 45789999999996332221223589999999999987754 267788887 3322234789999998877
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+++ .+++.+.|||||.+++.+.
T Consensus 155 ~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 155 PEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred hhh------hHHHHHhcCCCcEEEEEEc
Confidence 665 3567899999999998765
No 110
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.92 E-value=3e-10 Score=95.46 Aligned_cols=127 Identities=18% Similarity=0.311 Sum_probs=83.7
Q ss_pred cCCCcccccCcc--hhhccccHHH-HHHhhhcCCceeeccCcCCccccCCCC--CCCeEEEEeCCHHHHHhcCC------
Q 022305 109 DESPDSLFYETP--RFVTHIDDPA-IAALTKYYSEVFPPSNTPGVSHFPPGY--KQDRIVGMGMNEEELKRNPV------ 177 (299)
Q Consensus 109 d~~~~~~~y~~~--~~~~~l~~~~-~~~l~~~~~~vLDiGcG~G~~~~~~~~--~~~~v~gvD~S~~ml~~a~~------ 177 (299)
...-+-||-+.. +++..+.+.. +-++.+.-.+|||+|||.|-..+.... -...++|+|.|+.+++.|+.
T Consensus 36 gd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~ 115 (227)
T KOG1271|consen 36 GDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG 115 (227)
T ss_pred CCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC
Confidence 333445555432 4444442222 223334445999999999953322221 23569999999999987654
Q ss_pred ---CCcEEEeccCCCCCCCCCCCCeeEEEeccccccc---C-----CHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 178 ---LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL---T-----KPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 178 ---~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~---~-----d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
.++|.+.|+ ..-.+..++||+|+--.++.-+ + .+..++..+.++|+|||.|+|.-.|.
T Consensus 116 ~~n~I~f~q~DI---~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 116 FSNEIRFQQLDI---TDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred CCcceeEEEeec---cCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 289999999 5557788999999965554443 1 23457888999999999999975543
No 111
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.91 E-value=1.1e-09 Score=101.47 Aligned_cols=95 Identities=12% Similarity=0.203 Sum_probs=69.5
Q ss_pred CceeeccCcCCccc--cCCCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEEecc-
Q 022305 139 SEVFPPSNTPGVSH--FPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVV- 206 (299)
Q Consensus 139 ~~vLDiGcG~G~~~--~~~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vis~~- 206 (299)
.+|||+|||+|... +....+..+|+|+|+|+.+++.|+++ ++++.+|+ .. ++++++||+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~---~~-~l~~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDL---FA-ALPGRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECch---hh-hCCCCCccEEEECCC
Confidence 58999999999733 33344678999999999999876542 67888887 32 23456899999871
Q ss_pred -----c-------ccccCC------------HHHHHHHHHhhccCCcEEEEEecC
Q 022305 207 -----S-------VDYLTK------------PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 207 -----~-------l~~~~d------------~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
. ++|-+. ...+++++.++|||||.+++++.+
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 1 112111 247789999999999999998764
No 112
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.88 E-value=9.4e-09 Score=99.41 Aligned_cols=98 Identities=19% Similarity=0.203 Sum_probs=68.8
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCCC-----C--cE--EEeccCCCCCCCC--CCCCeeEEE
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPVL-----T--EY--VVQDLNLNPKLPF--EDNSFDVIT 203 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~-----~--~~--~~~D~~~~~~lpf--~~~~FD~Vi 203 (299)
...+|||+|||+|. .++....+.++|+|+|+|+++++.++++ + .+ ..+|. ...++ ++++||.|+
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~---~~~~~~~~~~~fD~Vl 314 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG---RGPSQWAENEQFDRIL 314 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc---ccccccccccccCEEE
Confidence 44689999999996 3333333467999999999999876553 2 22 34454 33333 567899999
Q ss_pred ec------ccccccCC----------------HHHHHHHHHhhccCCcEEEEEecC
Q 022305 204 NV------VSVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 204 s~------~~l~~~~d----------------~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+. .++++.++ ..++|.++.++|||||.++.++..
T Consensus 315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 42 34555444 257999999999999999988654
No 113
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.86 E-value=4e-09 Score=100.51 Aligned_cols=93 Identities=11% Similarity=0.161 Sum_probs=68.0
Q ss_pred CceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCC-CCCCeeEEEecccc
Q 022305 139 SEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPF-EDNSFDVITNVVSV 208 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf-~~~~FD~Vis~~~l 208 (299)
.++||+|||+|...+ ....+..+++|+|+|+.|++.++++ ++++.+|+ .+..+ .+++||+|+|+-
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl---~e~~l~~~~~FDLIVSNP-- 327 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSW---FDTDMPSEGKWDIIVSNP-- 327 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcch---hccccccCCCccEEEECC--
Confidence 589999999997433 3345678999999999999977653 67888887 33322 245799999963
Q ss_pred cccC-----------------------C----HHHHHHHHHhhccCCcEEEEEec
Q 022305 209 DYLT-----------------------K----PIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 209 ~~~~-----------------------d----~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.|++ | ..++++++.+.|+|||.++++..
T Consensus 328 PYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 328 PYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred CCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 1211 1 23667777889999999988765
No 114
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.85 E-value=1e-08 Score=92.95 Aligned_cols=96 Identities=17% Similarity=0.241 Sum_probs=68.2
Q ss_pred cCCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|.. .+....+..+++|+|+|+.+++.+++ +++++.+|+ .. ++.+++||+|+++-
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~---~~-~~~~~~fD~Iv~np 183 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW---FE-PLPGGRFDLIVSNP 183 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc---cC-cCCCCceeEEEECC
Confidence 346899999999963 23333456899999999999987654 367788887 22 23367899999852
Q ss_pred cc------c--------c------------cCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 207 SV------D--------Y------------LTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 207 ~l------~--------~------------~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
-. + | +.....+++++.++|||||.++++..
T Consensus 184 Py~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g 239 (275)
T PRK09328 184 PYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG 239 (275)
T ss_pred CcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 11 1 1 01235688889999999999999753
No 115
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=1.3e-09 Score=99.56 Aligned_cols=100 Identities=23% Similarity=0.324 Sum_probs=70.7
Q ss_pred HHHHHhhhcCCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCCC-----CcE-EEeccCCCCCCCCCC-CCee
Q 022305 129 PAIAALTKYYSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPVL-----TEY-VVQDLNLNPKLPFED-NSFD 200 (299)
Q Consensus 129 ~~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~~-----~~~-~~~D~~~~~~lpf~~-~~FD 200 (299)
..++.+.+...++||+|||+|...++....+ .+++|+|+.|.+++.++++ ++- ...-.. ..+.... ++||
T Consensus 154 ~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~--~~~~~~~~~~~D 231 (300)
T COG2264 154 EALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGF--LLLEVPENGPFD 231 (300)
T ss_pred HHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccc--cchhhcccCccc
Confidence 3455555677899999999998776665555 4699999999999988775 221 011110 1122333 5899
Q ss_pred EEEecccccccCCH-HHHHHHHHhhccCCcEEEEE
Q 022305 201 VITNVVSVDYLTKP-IEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 201 ~Vis~~~l~~~~d~-~~~l~ei~rvLkpGG~lii~ 234 (299)
+|+++- +.++ ..+..++++.|||||++|++
T Consensus 232 vIVANI----LA~vl~~La~~~~~~lkpgg~lIlS 262 (300)
T COG2264 232 VIVANI----LAEVLVELAPDIKRLLKPGGRLILS 262 (300)
T ss_pred EEEehh----hHHHHHHHHHHHHHHcCCCceEEEE
Confidence 999995 2233 46778999999999999997
No 116
>PHA03411 putative methyltransferase; Provisional
Probab=98.83 E-value=6.1e-09 Score=94.09 Aligned_cols=96 Identities=20% Similarity=0.269 Sum_probs=72.8
Q ss_pred CCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCCC---CcEEEeccCCCCCCCCCCCCeeEEEecccccccC
Q 022305 138 YSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 212 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~~---~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~ 212 (299)
..+|||+|||+|...+ ....+..+|+|+|+|+.|++.++++ ++++.+|+ ..+.. +++||+|+++--+.|.+
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~---~e~~~-~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDV---FEFES-NEKFDVVISNPPFGKIN 140 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECch---hhhcc-cCCCcEEEEcCCccccC
Confidence 4689999999996433 2223357999999999999988763 78899998 55543 46899999987777753
Q ss_pred C--------------------HHHHHHHHHhhccCCcEEEEEecC
Q 022305 213 K--------------------PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 213 d--------------------~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
. ..+.++...++|+|+|.+++-+..
T Consensus 141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss 185 (279)
T PHA03411 141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSG 185 (279)
T ss_pred chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEec
Confidence 1 246778889999999977776554
No 117
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.83 E-value=1.7e-08 Score=98.12 Aligned_cols=96 Identities=17% Similarity=0.227 Sum_probs=68.0
Q ss_pred CCceeeccCcCCcc--ccCCCC-CCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCCCCeeEEEec-
Q 022305 138 YSEVFPPSNTPGVS--HFPPGY-KQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNV- 205 (299)
Q Consensus 138 ~~~vLDiGcG~G~~--~~~~~~-~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~~~FD~Vis~- 205 (299)
..+|||+|||+|.. ++.... ...+|+++|+|+.|++.++++ ++++.+|+ ..++ ++++||+|++-
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da---~~~~-~~~~fD~Vl~D~ 326 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDA---RSFS-PEEQPDAILLDA 326 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcc---cccc-cCCCCCEEEEcC
Confidence 46899999999962 222222 346999999999999876542 57788888 5554 46789999942
Q ss_pred ---c--ccc------ccCC----------HHHHHHHHHhhccCCcEEEEEecC
Q 022305 206 ---V--SVD------YLTK----------PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 206 ---~--~l~------~~~d----------~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
. ++. |..+ ..++|.++.++|||||.+++++..
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 1 111 1111 236899999999999999998654
No 118
>PRK00811 spermidine synthase; Provisional
Probab=98.80 E-value=8.8e-09 Score=94.36 Aligned_cols=99 Identities=17% Similarity=0.102 Sum_probs=70.4
Q ss_pred cCCceeeccCcCCcccc-CCCC-CCCeEEEEeCCHHHHHhcCC-------------CCcEEEeccCCCCCCCCCCCCeeE
Q 022305 137 YYSEVFPPSNTPGVSHF-PPGY-KQDRIVGMGMNEEELKRNPV-------------LTEYVVQDLNLNPKLPFEDNSFDV 201 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~-~~~~-~~~~v~gvD~S~~ml~~a~~-------------~~~~~~~D~~~~~~lpf~~~~FD~ 201 (299)
...+||++|||.|.... .... ...+|++||+++++++.+++ +++++.+|.. .-+...+++||+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~--~~l~~~~~~yDv 153 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGI--KFVAETENSFDV 153 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchH--HHHhhCCCcccE
Confidence 45789999999886322 2233 34689999999999987764 2567778862 122334678999
Q ss_pred EEecccccccCC----HHHHHHHHHhhccCCcEEEEEecC
Q 022305 202 ITNVVSVDYLTK----PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 202 Vis~~~l~~~~d----~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
|++...-.+.+. ..++++++++.|||||.+++...+
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 998754443322 267889999999999999886443
No 119
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.79 E-value=3.9e-08 Score=83.59 Aligned_cols=101 Identities=20% Similarity=0.157 Sum_probs=75.9
Q ss_pred HHHh-hhcCCceeeccCcCCccccC--CCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCe
Q 022305 131 IAAL-TKYYSEVFPPSNTPGVSHFP--PGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSF 199 (299)
Q Consensus 131 ~~~l-~~~~~~vLDiGcG~G~~~~~--~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~F 199 (299)
+..| .+.-+.++|+|||+|.-.+. ...+.++++++|-++++++..++ +++.+.+|+- +.|+-.+ +|
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap--~~L~~~~-~~ 103 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAP--EALPDLP-SP 103 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccch--HhhcCCC-CC
Confidence 3444 34567899999999973333 44678999999999999885544 3677888872 3333222 79
Q ss_pred eEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 200 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 200 D~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
|.|+...+ .+.+.+|+.+...|||||.+++.....
T Consensus 104 daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 104 DAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred CEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecH
Confidence 99999887 467899999999999999999976543
No 120
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.79 E-value=3.4e-08 Score=89.39 Aligned_cols=122 Identities=16% Similarity=0.256 Sum_probs=88.2
Q ss_pred CcccccCcchhhccccHHHHHHhhh----cCCceeeccCcCCc----------cccC-CCCCCCeEEEEeCCHHHHHhcC
Q 022305 112 PDSLFYETPRFVTHIDDPAIAALTK----YYSEVFPPSNTPGV----------SHFP-PGYKQDRIVGMGMNEEELKRNP 176 (299)
Q Consensus 112 ~~~~~y~~~~~~~~l~~~~~~~l~~----~~~~vLDiGcG~G~----------~~~~-~~~~~~~v~gvD~S~~ml~~a~ 176 (299)
..++|+..|.....+.+.++..+.+ ..-+|+.+||++|. -.+. ......+|+|+|||..+|+.|+
T Consensus 67 n~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~ 146 (268)
T COG1352 67 NVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKAR 146 (268)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHh
Confidence 4455677766666666666766632 24589999999996 1111 1123579999999999999775
Q ss_pred CC-------------------------------------CcEEEeccCCCCCCCCCCCCeeEEEecccccccCCH--HHH
Q 022305 177 VL-------------------------------------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP--IEV 217 (299)
Q Consensus 177 ~~-------------------------------------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~--~~~ 217 (299)
.. +.|...|+ ..-++..+.||+|+|.+||-|++.+ .++
T Consensus 147 ~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NL---l~~~~~~~~fD~IfCRNVLIYFd~~~q~~i 223 (268)
T COG1352 147 AGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNL---LDDSPFLGKFDLIFCRNVLIYFDEETQERI 223 (268)
T ss_pred cCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCC---CCCccccCCCCEEEEcceEEeeCHHHHHHH
Confidence 41 55666666 3333245669999999999999754 679
Q ss_pred HHHHHhhccCCcEEEEEec
Q 022305 218 FKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 218 l~ei~rvLkpGG~lii~~~ 236 (299)
++.++..|+|||++++...
T Consensus 224 l~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 224 LRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred HHHHHHHhCCCCEEEEccC
Confidence 9999999999999999744
No 121
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.77 E-value=3.1e-08 Score=96.33 Aligned_cols=96 Identities=22% Similarity=0.288 Sum_probs=67.2
Q ss_pred cCCceeeccCcCCccc--cCCCC-CCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCC--CCCCCeeEEE
Q 022305 137 YYSEVFPPSNTPGVSH--FPPGY-KQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP--FEDNSFDVIT 203 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~--~~~~~-~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lp--f~~~~FD~Vi 203 (299)
...+|||+|||+|... +.... +.++|+++|+++.+++.+++ +++++++|+ ..++ ++ ++||+|+
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~---~~~~~~~~-~~fD~Vl 325 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDA---RKVHEKFA-EKFDKIL 325 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCc---ccccchhc-ccCCEEE
Confidence 3468999999999633 22222 45799999999999987654 267888888 5542 33 7899999
Q ss_pred ecc------cccccCC----------------HHHHHHHHHhhccCCcEEEEEec
Q 022305 204 NVV------SVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 204 s~~------~l~~~~d----------------~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+.- ++.+-++ ...+|+++.++|||||.++.++.
T Consensus 326 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred EcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 641 1221111 13579999999999999987653
No 122
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.77 E-value=1.4e-08 Score=91.37 Aligned_cols=97 Identities=14% Similarity=0.123 Sum_probs=68.0
Q ss_pred CceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCCC-----CcEEEeccCCCCCCCC-CCCCeeEEEecc----
Q 022305 139 SEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPVL-----TEYVVQDLNLNPKLPF-EDNSFDVITNVV---- 206 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~~-----~~~~~~D~~~~~~lpf-~~~~FD~Vis~~---- 206 (299)
.++||+|||+|...+ ....++.+++|+|+|+.+++.++++ .+++.+|+. ..++- ..++||+|+++-
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~--~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLY--DALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeech--hhcchhcCCCEeEEEECCCCCC
Confidence 479999999997333 3334567999999999999987764 578888872 12221 135799999872
Q ss_pred --ccccc----------------CC----HHHHHHHHHhhccCCcEEEEEecC
Q 022305 207 --SVDYL----------------TK----PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 207 --~l~~~----------------~d----~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
.+..+ .| ..++++.+.++|||||.+++++..
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~ 218 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE 218 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 11111 01 246778888999999999998653
No 123
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.75 E-value=4.6e-09 Score=96.39 Aligned_cols=136 Identities=15% Similarity=0.185 Sum_probs=86.2
Q ss_pred HHHHHHhhhcCCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCe
Q 022305 128 DPAIAALTKYYSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSF 199 (299)
Q Consensus 128 ~~~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~F 199 (299)
-.+++.+.....+|||+|||+|...+.....+ .+|+|+|+++.+++.|+++ ..+.+... .. .....|
T Consensus 152 l~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~---~~--~~~~~~ 226 (295)
T PF06325_consen 152 LELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS---ED--LVEGKF 226 (295)
T ss_dssp HHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT---SC--TCCS-E
T ss_pred HHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe---cc--cccccC
Confidence 34455555566799999999998555444444 5799999999999987764 22322221 22 234889
Q ss_pred eEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecC
Q 022305 200 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDIS 279 (299)
Q Consensus 200 D~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~ 279 (299)
|+|+++-..+- +...+..+.+.|||||++|++=.-. +....+.+.+. . ||..++...
T Consensus 227 dlvvANI~~~v---L~~l~~~~~~~l~~~G~lIlSGIl~----------------~~~~~v~~a~~-~-g~~~~~~~~-- 283 (295)
T PF06325_consen 227 DLVVANILADV---LLELAPDIASLLKPGGYLILSGILE----------------EQEDEVIEAYK-Q-GFELVEERE-- 283 (295)
T ss_dssp EEEEEES-HHH---HHHHHHHCHHHEEEEEEEEEEEEEG----------------GGHHHHHHHHH-T-TEEEEEEEE--
T ss_pred CEEEECCCHHH---HHHHHHHHHHhhCCCCEEEEccccH----------------HHHHHHHHHHH-C-CCEEEEEEE--
Confidence 99999864432 3567788999999999999972100 11122333343 3 898766543
Q ss_pred CCCCCCCCeEEEEEEec
Q 022305 280 PNPGRSDPMYVVYSRKA 296 (299)
Q Consensus 280 ~~~~~~~p~~~v~arK~ 296 (299)
.+-+..++++|+
T Consensus 284 -----~~~W~~l~~~Kk 295 (295)
T PF06325_consen 284 -----EGEWVALVFKKK 295 (295)
T ss_dssp -----ETTEEEEEEEE-
T ss_pred -----ECCEEEEEEEeC
Confidence 246777777774
No 124
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.75 E-value=3.3e-08 Score=95.71 Aligned_cols=98 Identities=16% Similarity=0.268 Sum_probs=70.0
Q ss_pred cCCceeeccCcCCc--cccCCCC-CCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCC-CCCCCeeEEEe
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGY-KQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLP-FEDNSFDVITN 204 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~-~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lp-f~~~~FD~Vis 204 (299)
...+|||+|||+|. .++.... ...+|+++|+|+.+++.++++ ++++++|. ..++ +.+++||.|++
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da---~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADA---ERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch---hhhhhhhhccCCEEEE
Confidence 34689999999996 3333322 357999999999999876543 56788888 5665 45678999995
Q ss_pred c------ccccccCC----------------HHHHHHHHHhhccCCcEEEEEecC
Q 022305 205 V------VSVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 205 ~------~~l~~~~d----------------~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
. .++..-++ ..++|.++.+.|||||.++.++..
T Consensus 314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 2 11221121 246789999999999999888654
No 125
>PRK04457 spermidine synthase; Provisional
Probab=98.74 E-value=7.9e-09 Score=93.65 Aligned_cols=98 Identities=13% Similarity=0.057 Sum_probs=70.3
Q ss_pred cCCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
...+|||+|||+|.. .+....+..+++++|+++++++.|++ +++++.+|.. +.+.-..++||+|++.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~--~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGA--EYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHH--HHHHhCCCCCCEEEEe
Confidence 456899999999973 33445578899999999999987654 2567888862 1223234689999975
Q ss_pred cc-ccccC---CHHHHHHHHHhhccCCcEEEEEec
Q 022305 206 VS-VDYLT---KPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 206 ~~-l~~~~---d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.. -...+ ...++++++.++|+|||.+++...
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 21 11111 136899999999999999998643
No 126
>PRK01581 speE spermidine synthase; Validated
Probab=98.73 E-value=6.6e-08 Score=90.65 Aligned_cols=98 Identities=13% Similarity=0.066 Sum_probs=68.0
Q ss_pred cCCceeeccCcCCccc--cCCCCCCCeEEEEeCCHHHHHhcCC---------------CCcEEEeccCCCCCCCCCCCCe
Q 022305 137 YYSEVFPPSNTPGVSH--FPPGYKQDRIVGMGMNEEELKRNPV---------------LTEYVVQDLNLNPKLPFEDNSF 199 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~--~~~~~~~~~v~gvD~S~~ml~~a~~---------------~~~~~~~D~~~~~~lpf~~~~F 199 (299)
...+||++|||.|... +....+..+|++||++++|++.|++ +++++.+|.. .-+.-.++.|
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~--~fL~~~~~~Y 227 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAK--EFLSSPSSLY 227 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHH--HHHHhcCCCc
Confidence 4569999999988522 2222234799999999999998774 2667778872 2234446789
Q ss_pred eEEEeccccc---ccCC--HHHHHHHHHhhccCCcEEEEEec
Q 022305 200 DVITNVVSVD---YLTK--PIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 200 D~Vis~~~l~---~~~d--~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
|+|++...-. .... -.++++.+++.|+|||.+++...
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 9999874211 0111 15689999999999999888633
No 127
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.73 E-value=8.7e-09 Score=97.06 Aligned_cols=95 Identities=35% Similarity=0.472 Sum_probs=82.4
Q ss_pred cCCceeeccCcCC-ccccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPG-VSHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G-~~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+++|+|||-| ...+......+.++|+|.++..+.++.. +..++.+|+ .+.||+++.||.+-+..
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~---~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADF---GKMPFEDNTFDGVRFLE 186 (364)
T ss_pred ccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhh---hcCCCCccccCcEEEEe
Confidence 4457999999944 5666667778999999999998887654 255688899 88999999999999999
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
+.+|.+++..+++|++|++||||+++..
T Consensus 187 ~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 187 VVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred ecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 9999999999999999999999999885
No 128
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.72 E-value=1.4e-08 Score=100.23 Aligned_cols=94 Identities=13% Similarity=0.219 Sum_probs=67.2
Q ss_pred CceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEEecc-
Q 022305 139 SEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVV- 206 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vis~~- 206 (299)
.+|||+|||+|...+ ....++.+++|+|+|+.+++.|+++ ++++.+|+ .. ++++++||+|+|+-
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~---~~-~~~~~~fDlIvsNPP 215 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW---FE-NIEKQKFDFIVSNPP 215 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecch---hh-hCcCCCccEEEECCC
Confidence 479999999997333 3345678999999999999977653 56677776 22 23456899999852
Q ss_pred -------------cccccC--------C----HHHHHHHHHhhccCCcEEEEEec
Q 022305 207 -------------SVDYLT--------K----PIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 207 -------------~l~~~~--------d----~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+..|-+ | ...+++++.++|||||.+++++.
T Consensus 216 Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 216 YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 111211 1 23567888999999999999865
No 129
>PRK03612 spermidine synthase; Provisional
Probab=98.68 E-value=2.4e-08 Score=98.94 Aligned_cols=99 Identities=16% Similarity=0.156 Sum_probs=71.4
Q ss_pred hcCCceeeccCcCCcccc-CCCCCC-CeEEEEeCCHHHHHhcCC---------------CCcEEEeccCCCCC-CCCCCC
Q 022305 136 KYYSEVFPPSNTPGVSHF-PPGYKQ-DRIVGMGMNEEELKRNPV---------------LTEYVVQDLNLNPK-LPFEDN 197 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~-~~~~~~-~~v~gvD~S~~ml~~a~~---------------~~~~~~~D~~~~~~-lpf~~~ 197 (299)
+..++|||+|||+|.... ..+++. .+++++|++++|++.+++ +++++.+|. .+ +...++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da---~~~l~~~~~ 372 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDA---FNWLRKLAE 372 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChH---HHHHHhCCC
Confidence 345789999999996222 223344 799999999999998776 256677777 33 233457
Q ss_pred CeeEEEecccccccCCH-----HHHHHHHHhhccCCcEEEEEecC
Q 022305 198 SFDVITNVVSVDYLTKP-----IEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 198 ~FD~Vis~~~l~~~~d~-----~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+||+|++...-.+.+.. .++++++++.|||||.+++...+
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~ 417 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTS 417 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCC
Confidence 89999998554333222 46899999999999999987543
No 130
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.66 E-value=2.2e-07 Score=80.43 Aligned_cols=148 Identities=18% Similarity=0.183 Sum_probs=94.7
Q ss_pred ceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHh-------cC-CC-CcEEEeccCCCCCCC------CCCCCeeEE
Q 022305 140 EVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKR-------NP-VL-TEYVVQDLNLNPKLP------FEDNSFDVI 202 (299)
Q Consensus 140 ~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~-------a~-~~-~~~~~~D~~~~~~lp------f~~~~FD~V 202 (299)
+||+||||+|. .+++..++.....-.|+.+..+.. +. .+ ..-+..|+.. ...+ +..++||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~-~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSA-PPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCC-CCCccccccccCCCCccee
Confidence 49999999997 777778888888888988877531 11 11 2234556521 1122 235689999
Q ss_pred EecccccccC--CHHHHHHHHHhhccCCcEEEEEecC----c--chHHHHHHhhhhcC----CCchhhhHHHHHHHhCCC
Q 022305 203 TNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFSN----R--CFWTKAISIWTSTG----DADHVMIVGAYFHYAGGY 270 (299)
Q Consensus 203 is~~~l~~~~--d~~~~l~ei~rvLkpGG~lii~~~~----~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~aGF 270 (299)
+|.+++|-.+ ..+.+|+.+.++|+|||.+++==|- . ..-...++.+.... +...+..+.. +..+.|+
T Consensus 107 ~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~-lA~~~GL 185 (204)
T PF06080_consen 107 FCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEA-LAAAHGL 185 (204)
T ss_pred eehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHH-HHHHCCC
Confidence 9999998775 4578999999999999988873111 0 11123334444332 2233333333 3367999
Q ss_pred CCCeeeecCCCCCCCCCeEEEEEEe
Q 022305 271 EPPQAVDISPNPGRSDPMYVVYSRK 295 (299)
Q Consensus 271 ~~v~~~~~~~~~~~~~p~~~v~arK 295 (299)
+..+.++.+.+ ...++.||
T Consensus 186 ~l~~~~~MPAN------N~~Lvfrk 204 (204)
T PF06080_consen 186 ELEEDIDMPAN------NLLLVFRK 204 (204)
T ss_pred ccCcccccCCC------CeEEEEeC
Confidence 99988887753 45566655
No 131
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.66 E-value=1.7e-08 Score=93.86 Aligned_cols=90 Identities=20% Similarity=0.105 Sum_probs=65.2
Q ss_pred cCCceeeccCcCCcccc--CCCCC-CCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGYK-QDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~~-~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
...+|||+|||+|.... ..... ...|+++|++++|++.|++ ++.++.+|. ...+...++||+|++.
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~---~~~~~~~~~fD~Ii~~ 156 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDG---YYGVPEFAPYDVIFVT 156 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCh---hhcccccCCccEEEEC
Confidence 34689999999996322 22222 2479999999999987654 367788887 5555455789999998
Q ss_pred ccccccCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 206 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 206 ~~l~~~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
..+++++ ..+.+.|||||.+++..
T Consensus 157 ~g~~~ip------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 157 VGVDEVP------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CchHHhH------HHHHHhcCCCCEEEEEe
Confidence 7666543 34678999999887753
No 132
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.63 E-value=5.6e-08 Score=84.01 Aligned_cols=94 Identities=20% Similarity=0.235 Sum_probs=59.0
Q ss_pred HHHHHHhhhcC--CceeeccCcCCccccCCCCC-CCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCCCCCCeeEEEe
Q 022305 128 DPAIAALTKYY--SEVFPPSNTPGVSHFPPGYK-QDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 128 ~~~~~~l~~~~--~~vLDiGcG~G~~~~~~~~~-~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
+.+++.+.+.. ..|-|+|||.+. ++...+ ..+|...|+-.. +-.++.+|+ .++|+++++.|++++
T Consensus 61 d~iI~~l~~~~~~~viaD~GCGdA~--la~~~~~~~~V~SfDLva~-------n~~Vtacdi---a~vPL~~~svDv~Vf 128 (219)
T PF05148_consen 61 DVIIEWLKKRPKSLVIADFGCGDAK--LAKAVPNKHKVHSFDLVAP-------NPRVTACDI---ANVPLEDESVDVAVF 128 (219)
T ss_dssp HHHHHHHCTS-TTS-EEEES-TT-H--HHHH--S---EEEEESS-S-------STTEEES-T---TS-S--TT-EEEEEE
T ss_pred HHHHHHHHhcCCCEEEEECCCchHH--HHHhcccCceEEEeeccCC-------CCCEEEecC---ccCcCCCCceeEEEE
Confidence 44566665433 468999998774 222222 357999998653 346889999 899999999999999
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
+.+|.-. |...+++|.+|+|||||.+.|.
T Consensus 129 cLSLMGT-n~~~fi~EA~RvLK~~G~L~IA 157 (219)
T PF05148_consen 129 CLSLMGT-NWPDFIREANRVLKPGGILKIA 157 (219)
T ss_dssp ES---SS--HHHHHHHHHHHEEEEEEEEEE
T ss_pred EhhhhCC-CcHHHHHHHHheeccCcEEEEE
Confidence 9888764 8999999999999999987765
No 133
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=3.2e-07 Score=81.46 Aligned_cols=137 Identities=19% Similarity=0.227 Sum_probs=96.2
Q ss_pred hcCCceeeccCcCCc--cccCC-CCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEE
Q 022305 136 KYYSEVFPPSNTPGV--SHFPP-GYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVIT 203 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~-~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vi 203 (299)
....+|||.|.|+|. ..++. ..+.++|+..|+-++.++.|+++ +++..+|+ .+.-+++ .||+|+
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv---~~~~~~~-~vDav~ 168 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDV---REGIDEE-DVDAVF 168 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccc---ccccccc-ccCEEE
Confidence 456899999999996 22232 33568999999999999998874 56677887 4554544 799997
Q ss_pred ecccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCC--
Q 022305 204 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPN-- 281 (299)
Q Consensus 204 s~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~-- 281 (299)
.- ++||.++++.++.+|||||.+++=.|+-+...+.... + ++.||..++.+++-..
T Consensus 169 LD-----mp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~----------------l-~~~g~~~ie~~E~l~R~~ 226 (256)
T COG2519 169 LD-----LPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEA----------------L-RERGFVDIEAVETLVRRW 226 (256)
T ss_pred Ec-----CCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHH----------------H-HhcCccchhhheeeehee
Confidence 64 6899999999999999999988866654322222111 1 3346777766665322
Q ss_pred --------C---CCCCCeEEEEEEecCC
Q 022305 282 --------P---GRSDPMYVVYSRKAST 298 (299)
Q Consensus 282 --------~---~~~~p~~~v~arK~~~ 298 (299)
| .-...-|++.+||.++
T Consensus 227 ~v~~~~~RP~~~~v~HTgyivf~R~~~~ 254 (256)
T COG2519 227 EVRKEATRPETRMVGHTGYIVFARKLGG 254 (256)
T ss_pred eecccccCcccccccceeEEEEEeeccC
Confidence 1 1234569999999864
No 134
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.62 E-value=1.4e-07 Score=83.57 Aligned_cols=93 Identities=22% Similarity=0.287 Sum_probs=70.5
Q ss_pred HHHHHHhhhcC--CceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 128 DPAIAALTKYY--SEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 128 ~~~~~~l~~~~--~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
+.+++.|.... ..|-|+|||.+.... . ....|+..|+-+ .+-+++.+|+ .++|++|++.|+++++
T Consensus 169 d~ii~~ik~r~~~~vIaD~GCGEakiA~--~-~~~kV~SfDL~a-------~~~~V~~cDm---~~vPl~d~svDvaV~C 235 (325)
T KOG3045|consen 169 DVIIRKIKRRPKNIVIADFGCGEAKIAS--S-ERHKVHSFDLVA-------VNERVIACDM---RNVPLEDESVDVAVFC 235 (325)
T ss_pred HHHHHHHHhCcCceEEEecccchhhhhh--c-cccceeeeeeec-------CCCceeeccc---cCCcCccCcccEEEee
Confidence 44555554333 458899998763222 1 235788888744 2357889999 8999999999999998
Q ss_pred ccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 206 VSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 206 ~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
.+|.- .|+..+++|++|+|||||.+.|.
T Consensus 236 LSLMg-tn~~df~kEa~RiLk~gG~l~IA 263 (325)
T KOG3045|consen 236 LSLMG-TNLADFIKEANRILKPGGLLYIA 263 (325)
T ss_pred Hhhhc-ccHHHHHHHHHHHhccCceEEEE
Confidence 88764 58999999999999999988875
No 135
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.61 E-value=4.2e-08 Score=88.14 Aligned_cols=92 Identities=24% Similarity=0.288 Sum_probs=77.8
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC-C-cEEEeccCCCCCCCCCCCCeeEEEecccccccC---
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL-T-EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT--- 212 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~-~-~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~--- 212 (299)
-.-++|+|||.|- +.-..+.+-++|.|++...+..+++. . ....+|+ .++|+.+.+||.+++..++||+.
T Consensus 46 gsv~~d~gCGngk--y~~~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~---l~~p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 46 GSVGLDVGCGNGK--YLGVNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADA---LKLPFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred cceeeecccCCcc--cCcCCCcceeeecchhhhhccccccCCCceeehhhh---hcCCCCCCccccchhhhhhhhhhhHH
Confidence 3578999999884 33333778899999999999988875 3 5888999 89999999999999999999995
Q ss_pred CHHHHHHHHHhhccCCcEEEEE
Q 022305 213 KPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 213 d~~~~l~ei~rvLkpGG~lii~ 234 (299)
....+++|+.|+|||||...+-
T Consensus 121 RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 121 RRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred HHHHHHHHHHHHhcCCCceEEE
Confidence 4578999999999999976554
No 136
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.61 E-value=3.8e-08 Score=86.79 Aligned_cols=94 Identities=20% Similarity=0.295 Sum_probs=70.4
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------------------CCcEEEeccCCCCCCCCCC-
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------------------LTEYVVQDLNLNPKLPFED- 196 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------------------~~~~~~~D~~~~~~lpf~~- 196 (299)
..+||.+|||.|.........+.+|+|+|+|+.+++.+.+ ++++.++|+ ..++-..
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDf---F~l~~~~~ 114 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDF---FELPPEDV 114 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-T---TTGGGSCH
T ss_pred CCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEccc---ccCChhhc
Confidence 3589999999997555444457899999999999987511 146788998 6665443
Q ss_pred CCeeEEEecccccccC--CHHHHHHHHHhhccCCcEE-EEE
Q 022305 197 NSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLA-IVS 234 (299)
Q Consensus 197 ~~FD~Vis~~~l~~~~--d~~~~l~ei~rvLkpGG~l-ii~ 234 (299)
++||+|+=..+++-++ ...++.+.+.++|||||.+ ++.
T Consensus 115 g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~ 155 (218)
T PF05724_consen 115 GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLIT 155 (218)
T ss_dssp HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEE
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 5899999777777774 5678999999999999973 444
No 137
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.61 E-value=5.7e-08 Score=88.38 Aligned_cols=98 Identities=13% Similarity=0.115 Sum_probs=66.8
Q ss_pred cCCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCCC------------CcEEEeccCCCCCCCCCCCCeeEE
Q 022305 137 YYSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPVL------------TEYVVQDLNLNPKLPFEDNSFDVI 202 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~~------------~~~~~~D~~~~~~lpf~~~~FD~V 202 (299)
...+||++|||.|.. .+....+..+++++|+++++++.+++. ++++.+|.. .-+...+++||+|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~--~~l~~~~~~yDvI 149 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGF--KFLADTENTFDVI 149 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchH--HHHHhCCCCccEE
Confidence 346999999998862 222222357899999999999877652 345555541 1122225789999
Q ss_pred EecccccccC--C--HHHHHHHHHhhccCCcEEEEEec
Q 022305 203 TNVVSVDYLT--K--PIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 203 is~~~l~~~~--d--~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
++......-+ + ..++++.+.+.|+|||.+++...
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 9865432222 2 36889999999999999988644
No 138
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.60 E-value=1.6e-07 Score=79.38 Aligned_cols=91 Identities=8% Similarity=0.001 Sum_probs=64.6
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCCCeeEEEeccccccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 211 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~ 211 (299)
..++||+|||.|...........+++++|+++.|++.+++ +++++.+|+ .++++++++||.|+++.-. |+
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~---~~~~~~~~~~d~vi~n~Py-~~ 89 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDA---LKFDLPKLQPYKVVGNLPY-NI 89 (169)
T ss_pred cCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECch---hcCCccccCCCEEEECCCc-cc
Confidence 3589999999997433333336799999999999987654 367899999 7888877789999987543 33
Q ss_pred CCHHHHHHHHHhh--ccCCcEEEEE
Q 022305 212 TKPIEVFKEMCQV--LKPGGLAIVS 234 (299)
Q Consensus 212 ~d~~~~l~ei~rv--LkpGG~lii~ 234 (299)
. ...+..+.+. +.++|.+++.
T Consensus 90 ~--~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 90 S--TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred H--HHHHHHHHhcCCCcceEEEEEE
Confidence 2 2333333322 4578888886
No 139
>PHA03412 putative methyltransferase; Provisional
Probab=98.60 E-value=1.1e-07 Score=84.31 Aligned_cols=89 Identities=19% Similarity=0.217 Sum_probs=63.7
Q ss_pred CCceeeccCcCCccccCC-----CCCCCeEEEEeCCHHHHHhcCCC---CcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 138 YSEVFPPSNTPGVSHFPP-----GYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~-----~~~~~~v~gvD~S~~ml~~a~~~---~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
..+|||+|||+|...+.. ..+..+|+|+|+++.|++.|+++ +.++.+|+ ...++ +++||+||++==..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~---~~~~~-~~~FDlIIsNPPY~ 125 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADA---LTTEF-DTLFDMAISNPPFG 125 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcch---hcccc-cCCccEEEECCCCC
Confidence 469999999999733321 11346999999999999999875 68899998 55554 56899999882111
Q ss_pred ----------cc--CCHHHHHHHHHhhccCCcE
Q 022305 210 ----------YL--TKPIEVFKEMCQVLKPGGL 230 (299)
Q Consensus 210 ----------~~--~d~~~~l~ei~rvLkpGG~ 230 (299)
|- .-...+++...++++||+.
T Consensus 126 ~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 126 KIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 10 1135688888897777775
No 140
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.59 E-value=2.1e-07 Score=84.38 Aligned_cols=98 Identities=17% Similarity=0.110 Sum_probs=68.1
Q ss_pred cCCceeeccCcCCccc--cCCCC-CCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGVSH--FPPGY-KQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~--~~~~~-~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
...+|||+|||+|... +.... ....|+++|+++.+++.++++ ++++..|. ..++...+.||.|++.
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~---~~~~~~~~~fD~Vl~D 147 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDG---RVFGAAVPKFDAILLD 147 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH---HHhhhhccCCCEEEEc
Confidence 4468999999999633 22222 236899999999999866542 56777787 5555555679999952
Q ss_pred ----c--cccccCC----------------HHHHHHHHHhhccCCcEEEEEecC
Q 022305 206 ----V--SVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 206 ----~--~l~~~~d----------------~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
. ++.+-++ ..++|+++.+.|||||.++.++..
T Consensus 148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 1 1221111 235899999999999999888654
No 141
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.57 E-value=1.2e-08 Score=97.96 Aligned_cols=97 Identities=18% Similarity=0.213 Sum_probs=64.4
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEE-----eCCHHHHHhcCCC-CcEEEeccCCCCCCCCCCCCeeEEEeccccc-c
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGM-----GMNEEELKRNPVL-TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD-Y 210 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gv-----D~S~~ml~~a~~~-~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~-~ 210 (299)
...+||+|||.|+ +...+...+|+.+ |..+.+++.|-++ +-...+-+ ....|||++++||+|.|+.++. |
T Consensus 118 iR~~LDvGcG~aS--F~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~-~s~rLPfp~~~fDmvHcsrc~i~W 194 (506)
T PF03141_consen 118 IRTALDVGCGVAS--FGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVL-GSQRLPFPSNAFDMVHCSRCLIPW 194 (506)
T ss_pred eEEEEeccceeeh--hHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhh-ccccccCCccchhhhhcccccccc
Confidence 4568999998875 2222222334443 4445566666543 22222221 0178999999999999987754 4
Q ss_pred cCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 211 LTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 211 ~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
..+-..+|-|+.|+|||||+++++-+.
T Consensus 195 ~~~~g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 195 HPNDGFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred hhcccceeehhhhhhccCceEEecCCc
Confidence 555567899999999999999998654
No 142
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.55 E-value=5.7e-08 Score=86.63 Aligned_cols=91 Identities=18% Similarity=0.253 Sum_probs=70.7
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC--CCcEEEeccCCCCCCCCCCCCeeEEEecccccccC
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV--LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 212 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~--~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~ 212 (299)
...+|+|+|+|.|. ..+...+|+.+++..|+ |+.++.+++ +++++.+|+ . -+++. +|+++..++||+++
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~~~rv~~~~gd~---f-~~~P~--~D~~~l~~vLh~~~ 172 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKEADRVEFVPGDF---F-DPLPV--ADVYLLRHVLHDWS 172 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHHTTTEEEEES-T---T-TCCSS--ESEEEEESSGGGS-
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-HhhhhccccccccccccccH---H-hhhcc--ccceeeehhhhhcc
Confidence 45689999999996 45566778899999999 778775543 689999998 4 45554 99999999999997
Q ss_pred CH--HHHHHHHHhhccCC--cEEEEE
Q 022305 213 KP--IEVFKEMCQVLKPG--GLAIVS 234 (299)
Q Consensus 213 d~--~~~l~ei~rvLkpG--G~lii~ 234 (299)
|. .++|+++++.|+|| |.++|.
T Consensus 173 d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 173 DEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 54 57899999999999 977664
No 143
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=1.8e-07 Score=85.51 Aligned_cols=90 Identities=19% Similarity=0.334 Sum_probs=63.8
Q ss_pred ceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 140 EVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 140 ~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
+|||+|||+|...+ ....+..+|+|+|+|+.+++.|+++ +.++..|.. + +. .++||+|+||= .
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf--~--~~-~~~fDlIVsNP--P 185 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLF--E--PL-RGKFDLIVSNP--P 185 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecc--c--cc-CCceeEEEeCC--C
Confidence 69999999997444 4444567999999999999988764 223444541 1 22 23899999881 1
Q ss_pred ccC-------------C--------------HHHHHHHHHhhccCCcEEEEEec
Q 022305 210 YLT-------------K--------------PIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 210 ~~~-------------d--------------~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
|++ + ..+++.++.+.|+|||.++++..
T Consensus 186 Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 186 YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 111 1 23678889999999999999865
No 144
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.52 E-value=8.9e-08 Score=85.38 Aligned_cols=93 Identities=13% Similarity=0.198 Sum_probs=68.3
Q ss_pred cCCceeeccCcCCcccc--CCCC-CCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCC-----CCCCCe
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGY-KQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLP-----FEDNSF 199 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~-~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lp-----f~~~~F 199 (299)
...+|||+|||+|.+.+ .... ..++++++|+++++++.|+++ ++++.+|+. +.++ .++++|
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~--~~L~~l~~~~~~~~f 145 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDAL--SALDQLLNNDPKPEF 145 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHH--HHHHHHHhCCCCCCC
Confidence 35789999999997443 3233 357999999999999877652 678888872 2222 124689
Q ss_pred eEEEecccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 200 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 200 D~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
|+|+.-.- -+....++.++.+.|||||.++++
T Consensus 146 D~VfiDa~---k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 146 DFAFVDAD---KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CEEEECCC---HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 99987532 134568899999999999998886
No 145
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=6.1e-07 Score=81.78 Aligned_cols=102 Identities=20% Similarity=0.208 Sum_probs=73.5
Q ss_pred HHHHhhh-cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCCCC
Q 022305 130 AIAALTK-YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNS 198 (299)
Q Consensus 130 ~~~~l~~-~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~~~ 198 (299)
+++.+.. ...+|||+|||.|. ..+....|..+++.+|+|..+++.++++ ..++..|. ..+.++ +
T Consensus 150 Ll~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~----~~~v~~-k 224 (300)
T COG2813 150 LLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNL----YEPVEG-K 224 (300)
T ss_pred HHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecc----cccccc-c
Confidence 4555543 34589999999997 4445566788999999999999988874 23455554 334444 8
Q ss_pred eeEEEecccccccCC-----HHHHHHHHHhhccCCcEEEEEec
Q 022305 199 FDVITNVVSVDYLTK-----PIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 199 FD~Vis~~~l~~~~d-----~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
||+|+|+==+|-=.+ -.+++++..+.|++||.+.|...
T Consensus 225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 999999965553322 24789999999999997766533
No 146
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.50 E-value=2.7e-07 Score=80.38 Aligned_cols=144 Identities=15% Similarity=0.117 Sum_probs=83.4
Q ss_pred CCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC-----C---CcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 138 YSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV-----L---TEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~-----~---~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
..+.||.|+|-|. ..++.. ...+|.-||+++..++.|++ . .++.+.-+ +++..++++||+|++-++
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~-~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gL---Q~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLP-VFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGL---QDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCC-C-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-G---GG----TT-EEEEEEES-
T ss_pred cceEEecccccchhHHHHHHH-hcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCH---hhccCCCCcEeEEEehHh
Confidence 4679999999885 223322 25789999999999998873 1 45556666 555445679999999999
Q ss_pred ccccC--CHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcC--CCchhhhHHHHHHHhCCCCCCeeeecCCCCC
Q 022305 208 VDYLT--KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTG--DADHVMIVGAYFHYAGGYEPPQAVDISPNPG 283 (299)
Q Consensus 208 l~~~~--d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~ 283 (299)
+.|+. |..++|+.+...|+|+|.+++-......- ...+.... -......+.+.|+ .||++.++...-..-|.
T Consensus 132 lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~---~~~~D~~DsSvTRs~~~~~~lF~-~AGl~~v~~~~Q~~fP~ 207 (218)
T PF05891_consen 132 LGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSG---FDEFDEEDSSVTRSDEHFRELFK-QAGLRLVKEEKQKGFPK 207 (218)
T ss_dssp GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSS---EEEEETTTTEEEEEHHHHHHHHH-HCT-EEEEEEE-TT--T
T ss_pred hccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCC---CcccCCccCeeecCHHHHHHHHH-HcCCEEEEeccccCCCc
Confidence 99997 56799999999999999999863321100 00111110 0112234555564 49999887655544444
Q ss_pred CCCCeE
Q 022305 284 RSDPMY 289 (299)
Q Consensus 284 ~~~p~~ 289 (299)
..-|.+
T Consensus 208 ~L~pV~ 213 (218)
T PF05891_consen 208 ELYPVR 213 (218)
T ss_dssp TS-EEE
T ss_pred cceEEE
Confidence 444443
No 147
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.49 E-value=1e-07 Score=82.63 Aligned_cols=102 Identities=16% Similarity=0.183 Sum_probs=71.8
Q ss_pred ceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCC-CC--CCCCCeeEEEecc
Q 022305 140 EVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPK-LP--FEDNSFDVITNVV 206 (299)
Q Consensus 140 ~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~-lp--f~~~~FD~Vis~~ 206 (299)
-+||+|||.|. ..++...|+..++|+|++...+..+.+ ++.++.+|+ .. +. ++++++|.|+.++
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da---~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDA---RELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-C---TTHHHHHSTTTSEEEEEEES
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccH---HHHHhhcccCCchheEEEeC
Confidence 68999999996 445567788999999999998876543 478889998 44 32 5679999999876
Q ss_pred cccccCC--------HHHHHHHHHhhccCCcEEEEEecCcchHHHH
Q 022305 207 SVDYLTK--------PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKA 244 (299)
Q Consensus 207 ~l~~~~d--------~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~ 244 (299)
-=.|... -..++.++.++|||||.+.+.+.+.......
T Consensus 97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~ 142 (195)
T PF02390_consen 97 PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWM 142 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHH
T ss_pred CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHH
Confidence 5444431 1489999999999999999887665544433
No 148
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=2e-07 Score=80.94 Aligned_cols=101 Identities=17% Similarity=0.158 Sum_probs=74.1
Q ss_pred ccHHHHHHh-hhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCC-C
Q 022305 126 IDDPAIAAL-TKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPF-E 195 (299)
Q Consensus 126 l~~~~~~~l-~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf-~ 195 (299)
+...+++.| .+...+||+||||+|...-..+.-..+|+.+|..++..+.|++ ++.++++|.. ..+ +
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~----~G~~~ 135 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGS----KGWPE 135 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcc----cCCCC
Confidence 334456666 3566899999999996222222223499999999999998876 3778889973 333 3
Q ss_pred CCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 196 DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 196 ~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
...||.|+...+...++ +.+.+-|||||.+++-+.
T Consensus 136 ~aPyD~I~Vtaaa~~vP------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 136 EAPYDRIIVTAAAPEVP------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCcCEEEEeeccCCCC------HHHHHhcccCCEEEEEEc
Confidence 47899999998888776 346778999999988655
No 149
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.47 E-value=7.1e-07 Score=70.44 Aligned_cols=94 Identities=30% Similarity=0.449 Sum_probs=68.9
Q ss_pred eeeccCcCCccc-cCCCCC-CCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCC--CCCCC-CCeeEEEeccc
Q 022305 141 VFPPSNTPGVSH-FPPGYK-QDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPK--LPFED-NSFDVITNVVS 207 (299)
Q Consensus 141 vLDiGcG~G~~~-~~~~~~-~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~--lpf~~-~~FD~Vis~~~ 207 (299)
++|+|||.|... +..... ...++|+|+++.|++.++.. +.+...|. .. +++.+ ..||++.+...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADA---LGGVLPFEDSASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEecc---ccCCCCCCCCCceeEEeeeee
Confidence 999999999632 222212 24899999999999874432 36777777 44 78877 58999944444
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
.++.. +...+.++.++|+|+|.+++.....
T Consensus 129 ~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 129 LHLLP-PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred hhcCC-HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 44444 8999999999999999998886653
No 150
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.45 E-value=7.1e-08 Score=98.74 Aligned_cols=96 Identities=17% Similarity=0.166 Sum_probs=69.1
Q ss_pred CCceeeccCcCCccccCCCCCCC-eEEEEeCCHHHHHhcCCC----------CcEEEeccCCCCC-CCCCCCCeeEEEec
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQD-RIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPK-LPFEDNSFDVITNV 205 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~-~v~gvD~S~~ml~~a~~~----------~~~~~~D~~~~~~-lpf~~~~FD~Vis~ 205 (299)
..+|||+|||+|...+.....++ +|+++|+|+.+++.++++ ++++++|+ .+ +.-..++||+|++.
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~---~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADC---LAWLKEAREQFDLIFID 615 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccH---HHHHHHcCCCcCEEEEC
Confidence 46899999999985554444444 699999999999977652 56788887 32 21115689999985
Q ss_pred -----------ccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 206 -----------VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 206 -----------~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.+.....+...++..+.++|+|||.++++..
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 1122233556788899999999999888643
No 151
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.44 E-value=2.2e-07 Score=90.34 Aligned_cols=107 Identities=18% Similarity=0.186 Sum_probs=72.1
Q ss_pred ccHHHHHHhh-hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCC-CCCCCC
Q 022305 126 IDDPAIAALT-KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLN-PKLPFE 195 (299)
Q Consensus 126 l~~~~~~~l~-~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~-~~lpf~ 195 (299)
+.+.+++.+. ....+|||+|||+|...+.......+|+|+|+|++|++.|++ +++++.+|+... ..+++.
T Consensus 285 l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~ 364 (443)
T PRK13168 285 MVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWA 364 (443)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhh
Confidence 3334444442 234689999999998555444445799999999999987764 367899998310 123455
Q ss_pred CCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 196 DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 196 ~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+++||+|++.- .+. ...+.++.+.+ ++|++.++++..
T Consensus 365 ~~~fD~Vi~dP--Pr~-g~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 365 LGGFDKVLLDP--PRA-GAAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred cCCCCEEEECc--CCc-ChHHHHHHHHh-cCCCeEEEEEeC
Confidence 67899998752 222 23455666655 699999999864
No 152
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.43 E-value=6.7e-08 Score=84.64 Aligned_cols=100 Identities=23% Similarity=0.200 Sum_probs=65.9
Q ss_pred HHHHHHh-hhcCCceeeccCcCCcccc--CCC-CCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCC
Q 022305 128 DPAIAAL-TKYYSEVFPPSNTPGVSHF--PPG-YKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFE 195 (299)
Q Consensus 128 ~~~~~~l-~~~~~~vLDiGcG~G~~~~--~~~-~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~ 195 (299)
..+++.+ .+.-.+|||+|||+|...- ... -+...|+++|+.+.+.+.|+++ +.++++|. ..---+
T Consensus 62 a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg---~~g~~~ 138 (209)
T PF01135_consen 62 ARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDG---SEGWPE 138 (209)
T ss_dssp HHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-G---GGTTGG
T ss_pred HHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcch---hhcccc
Confidence 3345555 3456799999999995211 111 1335799999999999988763 67899997 322224
Q ss_pred CCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 196 DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 196 ~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
...||.|++......++ ..+.+.||+||.+++-+.
T Consensus 139 ~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 139 EAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp G-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEES
T ss_pred CCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEEc
Confidence 56899999998876553 346778999999988654
No 153
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.42 E-value=7.2e-07 Score=79.78 Aligned_cols=97 Identities=12% Similarity=0.277 Sum_probs=68.7
Q ss_pred CceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCC--CCCCCCCCCCeeEEEec
Q 022305 139 SEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNL--NPKLPFEDNSFDVITNV 205 (299)
Q Consensus 139 ~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~--~~~lpf~~~~FD~Vis~ 205 (299)
..+||+|||+|. ..+...++.+.+++||.|+.+++.|.++ +..+.-++.. ....+..++.+|+++|+
T Consensus 150 ~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsN 229 (328)
T KOG2904|consen 150 THILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSN 229 (328)
T ss_pred ceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecC
Confidence 369999999997 3445566789999999999999877664 4444333311 13334567899999988
Q ss_pred ccccccC----------------------------CHHHHHHHHHhhccCCcEEEEEecC
Q 022305 206 VSVDYLT----------------------------KPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 206 ~~l~~~~----------------------------d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
= .|+. ....++.-+.|.|+|||.+.+++..
T Consensus 230 P--PYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 230 P--PYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE 287 (328)
T ss_pred C--CcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence 2 2221 1235667789999999999998764
No 154
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.40 E-value=8.7e-07 Score=82.24 Aligned_cols=97 Identities=25% Similarity=0.337 Sum_probs=76.8
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCCCc--------EEE-eccCCCCCCCCCCCCeeEEEecc-
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVLTE--------YVV-QDLNLNPKLPFEDNSFDVITNVV- 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~~~--------~~~-~D~~~~~~lpf~~~~FD~Vis~~- 206 (299)
....+||+=||+|...+...+-+++++|.|++..|++-++.+.+ +.. +|+ .++|+++++||.|++--
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da---~~lpl~~~~vdaIatDPP 273 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDA---TNLPLRDNSVDAIATDPP 273 (347)
T ss_pred cCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEeccc---ccCCCCCCccceEEecCC
Confidence 34589999999999888888889999999999999998887622 233 388 89999999999999531
Q ss_pred ----c---ccccCC-HHHHHHHHHhhccCCcEEEEEec
Q 022305 207 ----S---VDYLTK-PIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 207 ----~---l~~~~d-~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+ ..-+++ ..++|+.+.++||+||.+++..+
T Consensus 274 YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 274 YGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 1 111122 36899999999999999998755
No 155
>PLN02366 spermidine synthase
Probab=98.39 E-value=5.1e-07 Score=83.58 Aligned_cols=96 Identities=13% Similarity=0.124 Sum_probs=67.8
Q ss_pred hcCCceeeccCcCCc--cccCCCCC-CCeEEEEeCCHHHHHhcCC------------CCcEEEeccCCCCCC-C-CCCCC
Q 022305 136 KYYSEVFPPSNTPGV--SHFPPGYK-QDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKL-P-FEDNS 198 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~~~~-~~~v~gvD~S~~ml~~a~~------------~~~~~~~D~~~~~~l-p-f~~~~ 198 (299)
....+||++|||.|. ..+. .++ ..+|+.+|+++.+++.+++ +++++.+|. ... . .++++
T Consensus 90 ~~pkrVLiIGgG~G~~~rell-k~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da---~~~l~~~~~~~ 165 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIA-RHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDG---VEFLKNAPEGT 165 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHH-hCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChH---HHHHhhccCCC
Confidence 346799999999886 2222 333 3689999999999987654 366778886 221 1 23568
Q ss_pred eeEEEecccccccCC----HHHHHHHHHhhccCCcEEEEEe
Q 022305 199 FDVITNVVSVDYLTK----PIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 199 FD~Vis~~~l~~~~d----~~~~l~ei~rvLkpGG~lii~~ 235 (299)
||+|++-..-.+.+. -.++++.+++.|+|||.+++..
T Consensus 166 yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 166 YDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred CCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 999998654333221 2478999999999999987753
No 156
>PLN02672 methionine S-methyltransferase
Probab=98.38 E-value=5.6e-07 Score=94.88 Aligned_cols=95 Identities=18% Similarity=0.228 Sum_probs=67.2
Q ss_pred CceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCC------------------------CCcEEEeccCCCCCC
Q 022305 139 SEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPV------------------------LTEYVVQDLNLNPKL 192 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~------------------------~~~~~~~D~~~~~~l 192 (299)
.+|||+|||+|...+ ....+..+|+|+|+|+.+++.|++ +++++++|+ ...
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl---~~~ 196 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDL---LGY 196 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECch---hhh
Confidence 479999999997433 334456799999999999986622 367888887 322
Q ss_pred CCCC--CCeeEEEec--------------ccccc------------c--------CC----HHHHHHHHHhhccCCcEEE
Q 022305 193 PFED--NSFDVITNV--------------VSVDY------------L--------TK----PIEVFKEMCQVLKPGGLAI 232 (299)
Q Consensus 193 pf~~--~~FD~Vis~--------------~~l~~------------~--------~d----~~~~l~ei~rvLkpGG~li 232 (299)
+.+ ..||+|+|+ .+.+| . .| ..+++++..++|||||.++
T Consensus 197 -~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~ 275 (1082)
T PLN02672 197 -CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI 275 (1082)
T ss_pred -ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 222 369999987 11111 0 11 1567888899999999999
Q ss_pred EEecC
Q 022305 233 VSFSN 237 (299)
Q Consensus 233 i~~~~ 237 (299)
+++..
T Consensus 276 lEiG~ 280 (1082)
T PLN02672 276 FNMGG 280 (1082)
T ss_pred EEECc
Confidence 99764
No 157
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.36 E-value=6.1e-07 Score=78.55 Aligned_cols=138 Identities=18% Similarity=0.174 Sum_probs=90.5
Q ss_pred cCCceeeccCcCCccccCCCCCCC-eEEEEeCCHHHHHhcCCC----------CcEEEeccCCCCCC--CCCCCCeeEEE
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQD-RIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKL--PFEDNSFDVIT 203 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~-~v~gvD~S~~ml~~a~~~----------~~~~~~D~~~~~~l--pf~~~~FD~Vi 203 (299)
...+|||.+.|-|...+.....++ .|+-++-+++.|+.|.-+ ++.+.+|. .++ .|+|.+||+|+
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~---~e~V~~~~D~sfDaIi 210 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDA---YEVVKDFDDESFDAII 210 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccH---HHHHhcCCccccceEe
Confidence 457899999988876665555677 999999999999877653 68888998 444 48899999998
Q ss_pred ec---ccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCC
Q 022305 204 NV---VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISP 280 (299)
Q Consensus 204 s~---~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~ 280 (299)
-- +++------+++.+|++|+|||||.++==+.++... +.+.+-..-+.+.+ +.+||+.++...
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r---------yrG~d~~~gVa~RL-r~vGF~~v~~~~--- 277 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR---------YRGLDLPKGVAERL-RRVGFEVVKKVR--- 277 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc---------cccCChhHHHHHHH-HhcCceeeeeeh---
Confidence 21 111100023678899999999999876545544311 11111112233334 559999776532
Q ss_pred CCCCCCCeEEEEEEec
Q 022305 281 NPGRSDPMYVVYSRKA 296 (299)
Q Consensus 281 ~~~~~~p~~~v~arK~ 296 (299)
..+.|+|.|+
T Consensus 278 ------~~~gv~A~k~ 287 (287)
T COG2521 278 ------EALGVVAVKP 287 (287)
T ss_pred ------hccceEEecC
Confidence 3455677664
No 158
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.33 E-value=4.6e-07 Score=81.45 Aligned_cols=145 Identities=14% Similarity=0.215 Sum_probs=83.7
Q ss_pred CceeeccCcCCccccC-CCCCCCeEEEEeCCHHHHHhcC------------------------------------CC-Cc
Q 022305 139 SEVFPPSNTPGVSHFP-PGYKQDRIVGMGMNEEELKRNP------------------------------------VL-TE 180 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~-~~~~~~~v~gvD~S~~ml~~a~------------------------------------~~-~~ 180 (299)
.++||+|||+-.-... ......+|+..|.++.-++.-+ +. -.
T Consensus 58 ~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~ 137 (256)
T PF01234_consen 58 ETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVKQ 137 (256)
T ss_dssp EEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEEE
T ss_pred CEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhce
Confidence 4789999998543222 2222357999999987654110 00 23
Q ss_pred EEEeccCCCCCCCCCC-----CCeeEEEeccccccc-CCH---HHHHHHHHhhccCCcEEEEEec-CcchHHHHHHhhhh
Q 022305 181 YVVQDLNLNPKLPFED-----NSFDVITNVVSVDYL-TKP---IEVFKEMCQVLKPGGLAIVSFS-NRCFWTKAISIWTS 250 (299)
Q Consensus 181 ~~~~D~~~~~~lpf~~-----~~FD~Vis~~~l~~~-~d~---~~~l~ei~rvLkpGG~lii~~~-~~~~~~~~~~~~~~ 250 (299)
++.+|+... -|+.. .+||+|++.++++.. +|+ .++++++.++|||||+||+... +... ..
T Consensus 138 Vv~cDV~~~--~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~--------Y~ 207 (256)
T PF01234_consen 138 VVPCDVTQP--NPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY--------YM 207 (256)
T ss_dssp EEE--TTSS--STTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE--------EE
T ss_pred EEEeeccCC--CCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee--------EE
Confidence 677898422 23332 359999999999987 354 5789999999999998887532 2211 11
Q ss_pred cCCC------chhhhHHHHHHHhCCCCCCeeeecCCCCCCCCCeEEEEEEe
Q 022305 251 TGDA------DHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPMYVVYSRK 295 (299)
Q Consensus 251 ~~~~------~~~~~~~~~~~~~aGF~~v~~~~~~~~~~~~~p~~~v~arK 295 (299)
.++. -...++.+-+ +++||.+.+... ......-+-++.++|||
T Consensus 208 vG~~~F~~l~l~ee~v~~al-~~aG~~i~~~~~-~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 208 VGGHKFPCLPLNEEFVREAL-EEAGFDIEDLEK-QSKVSDYEGMFFLVARK 256 (256)
T ss_dssp ETTEEEE---B-HHHHHHHH-HHTTEEEEEEEG--TTTB---EEEEEEEEE
T ss_pred ECCEecccccCCHHHHHHHH-HHcCCEEEeccc-ccCcCCCCcEEEEEEeC
Confidence 1111 1112333334 569998777763 22333456789999998
No 159
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.31 E-value=8.4e-07 Score=82.51 Aligned_cols=95 Identities=7% Similarity=-0.002 Sum_probs=65.5
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCC-CCCCeeEEEecccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPF-EDNSFDVITNVVSV 208 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf-~~~~FD~Vis~~~l 208 (299)
..+|||+|||+|...+....++.+|+|+|+|+.|++.|++ +++++.+|+ ..+.. .+++||+|++.--
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~---~~~~~~~~~~~D~Vv~dPP- 249 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDS---TQFATAQGEVPDLVLVNPP- 249 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCH---HHHHHhcCCCCeEEEECCC-
Confidence 4689999999998555555567899999999999987654 267999998 55432 3457999998721
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
.- ...+.+.++...++|++.++++....
T Consensus 250 -r~-G~~~~~~~~l~~~~~~~ivyvsc~p~ 277 (315)
T PRK03522 250 -RR-GIGKELCDYLSQMAPRFILYSSCNAQ 277 (315)
T ss_pred -CC-CccHHHHHHHHHcCCCeEEEEECCcc
Confidence 11 12223333344478888888875543
No 160
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.30 E-value=4.5e-07 Score=86.83 Aligned_cols=94 Identities=20% Similarity=0.213 Sum_probs=64.1
Q ss_pred CCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCCC----------CcEEEeccCCCCCC-C-C--CCCCeeEE
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKL-P-F--EDNSFDVI 202 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~~----------~~~~~~D~~~~~~l-p-f--~~~~FD~V 202 (299)
..+|||+|||+|...+.....+ .+|+++|+|+.+++.++++ ++++.+|+ ... . + ..++||+|
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~---~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDV---FKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccH---HHHHHHHHhcCCCCCEE
Confidence 4689999999997544433333 5899999999999876542 46788887 332 1 1 35689999
Q ss_pred Eecccc---------cccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 203 TNVVSV---------DYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 203 is~~~l---------~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
++.-=. ....+...+++...++|||||.++..
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~ 338 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTF 338 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 977210 00113445566788999999987753
No 161
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.18 E-value=1.5e-06 Score=84.31 Aligned_cols=96 Identities=21% Similarity=0.264 Sum_probs=66.1
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCC-CCCCCCCCCCeeEEEecccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNL-NPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~-~~~lpf~~~~FD~Vis~~~l 208 (299)
..+|||+|||+|...+.......+|+|+|+|+.|++.|++ +++++.+|+.. ...+++.+++||+|+..--
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPP- 371 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPP- 371 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcC-
Confidence 3689999999998655554445789999999999987765 37789999721 0112344568999986421
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
...-...+++.+.+ ++|++.++++..
T Consensus 372 -r~G~~~~~l~~l~~-l~~~~ivyvsc~ 397 (431)
T TIGR00479 372 -RKGCAAEVLRTIIE-LKPERIVYVSCN 397 (431)
T ss_pred -CCCCCHHHHHHHHh-cCCCEEEEEcCC
Confidence 11113566666554 899998888643
No 162
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.15 E-value=8.7e-06 Score=70.89 Aligned_cols=90 Identities=19% Similarity=0.349 Sum_probs=69.1
Q ss_pred CceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCC---CCCCeeEEEecccccccCCHH
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPF---EDNSFDVITNVVSVDYLTKPI 215 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf---~~~~FD~Vis~~~l~~~~d~~ 215 (299)
-++|||||=+....+.. ..--+|+.||+++. .-...++|+ .+.|. +++.||+|.++.+|.+++++.
T Consensus 53 lrlLEVGals~~N~~s~-~~~fdvt~IDLns~-------~~~I~qqDF---m~rplp~~~~e~FdvIs~SLVLNfVP~p~ 121 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST-SGWFDVTRIDLNSQ-------HPGILQQDF---MERPLPKNESEKFDVISLSLVLNFVPDPK 121 (219)
T ss_pred ceEEeecccCCCCcccc-cCceeeEEeecCCC-------CCCceeecc---ccCCCCCCcccceeEEEEEEEEeeCCCHH
Confidence 48999998533222221 22346999999882 255778888 66665 467999999999999999885
Q ss_pred ---HHHHHHHhhccCCcE-----EEEEecCcc
Q 022305 216 ---EVFKEMCQVLKPGGL-----AIVSFSNRC 239 (299)
Q Consensus 216 ---~~l~ei~rvLkpGG~-----lii~~~~~~ 239 (299)
++++.+.+.|+|+|. +++..|.++
T Consensus 122 ~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C 153 (219)
T PF11968_consen 122 QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC 153 (219)
T ss_pred HHHHHHHHHHHHhCCCCccCcceEEEEeCchH
Confidence 689999999999999 888888765
No 163
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=3.4e-06 Score=68.79 Aligned_cols=79 Identities=14% Similarity=0.207 Sum_probs=59.6
Q ss_pred cccHHHHHHhhhcC-----CceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCC
Q 022305 125 HIDDPAIAALTKYY-----SEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPK 191 (299)
Q Consensus 125 ~l~~~~~~~l~~~~-----~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~ 191 (299)
|++..++.-+.+.+ .+++|+|||+|...+...++. ..|+|+||.|++|+.++++ +++.++|+ ..
T Consensus 31 ~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdi---ld 107 (185)
T KOG3420|consen 31 HIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDI---LD 107 (185)
T ss_pred HHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeec---cc
Confidence 34444444443332 579999999997665555544 6799999999999988775 78899999 77
Q ss_pred CCCCCCCeeEEEecc
Q 022305 192 LPFEDNSFDVITNVV 206 (299)
Q Consensus 192 lpf~~~~FD~Vis~~ 206 (299)
+.+..+.||.++.+-
T Consensus 108 le~~~g~fDtaviNp 122 (185)
T KOG3420|consen 108 LELKGGIFDTAVINP 122 (185)
T ss_pred hhccCCeEeeEEecC
Confidence 777789999998774
No 164
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.11 E-value=2.1e-06 Score=74.61 Aligned_cols=96 Identities=9% Similarity=-0.043 Sum_probs=65.0
Q ss_pred CceeeccCcCCccccC-CCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 139 SEVFPPSNTPGVSHFP-PGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~-~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
.++||+|||+|...+. ......+|+++|+++.+++.++++ ++++.+|+. ..++...++||+|++.==
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~--~~l~~~~~~fDlV~~DPP-- 130 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNAL--SFLAQPGTPHNVVFVDPP-- 130 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHH--HHHhhcCCCceEEEECCC--
Confidence 5899999999975542 233346999999999998866542 667888872 223323457999998732
Q ss_pred ccCC-HHHHHHHHHh--hccCCcEEEEEecCc
Q 022305 210 YLTK-PIEVFKEMCQ--VLKPGGLAIVSFSNR 238 (299)
Q Consensus 210 ~~~d-~~~~l~ei~r--vLkpGG~lii~~~~~ 238 (299)
|... ...+++.+.. +|+|+|.++++....
T Consensus 131 y~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 131 FRKGLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred CCCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 2222 3345555544 479999999986653
No 165
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.09 E-value=9.8e-07 Score=72.54 Aligned_cols=57 Identities=28% Similarity=0.352 Sum_probs=49.4
Q ss_pred CCCCCCCCCeeEEEecccccccC--CHHHHHHHHHhhccCCcEEEEEecCcchHHHHHH
Q 022305 190 PKLPFEDNSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAIS 246 (299)
Q Consensus 190 ~~lpf~~~~FD~Vis~~~l~~~~--d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~ 246 (299)
...+|.+++.|+|.+.++++|+. ....++++++|+|||||++-+.+|...+....+.
T Consensus 39 ~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~ 97 (185)
T COG4627 39 NESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQ 97 (185)
T ss_pred hhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHh
Confidence 56789999999999999999995 5668999999999999999999998766655543
No 166
>PLN02476 O-methyltransferase
Probab=98.07 E-value=1.6e-06 Score=78.89 Aligned_cols=93 Identities=13% Similarity=0.103 Sum_probs=69.2
Q ss_pred cCCceeeccCcCCccccCC--CC-CCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCC-C----CCCCe
Q 022305 137 YYSEVFPPSNTPGVSHFPP--GY-KQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLP-F----EDNSF 199 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~--~~-~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lp-f----~~~~F 199 (299)
...+|||+|+++|.+.+.. .. ++.+++.+|.++++.+.|++ +++++.+|+. +.|+ + .+++|
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~--e~L~~l~~~~~~~~F 195 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAA--ESLKSMIQNGEGSSY 195 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH--HHHHHHHhcccCCCC
Confidence 3578999999999755533 22 35689999999999987765 3778888873 2232 1 24689
Q ss_pred eEEEecccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 200 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 200 D~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
|+|+.-.- -.+...+++.+.+.|+|||.++++
T Consensus 196 D~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 196 DFAFVDAD---KRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEe
Confidence 99997642 235678899999999999999986
No 167
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.07 E-value=2.8e-06 Score=75.25 Aligned_cols=102 Identities=17% Similarity=0.185 Sum_probs=76.7
Q ss_pred CceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCC---CCCCCCeeEEEec
Q 022305 139 SEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKL---PFEDNSFDVITNV 205 (299)
Q Consensus 139 ~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~l---pf~~~~FD~Vis~ 205 (299)
..+||||||.|. ..++...|...++|||+....+..+-+ ++.+++.|+ ..+ -+++++.|-|..+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA---~~~l~~~~~~~sl~~I~i~ 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDA---VEVLDYLIPDGSLDKIYIN 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCH---HHHHHhcCCCCCeeEEEEE
Confidence 368999999997 555677788999999999887765432 466777787 333 2456699999988
Q ss_pred ccccccCC--------HHHHHHHHHhhccCCcEEEEEecCcchHHH
Q 022305 206 VSVDYLTK--------PIEVFKEMCQVLKPGGLAIVSFSNRCFWTK 243 (299)
Q Consensus 206 ~~l~~~~d--------~~~~l~ei~rvLkpGG~lii~~~~~~~~~~ 243 (299)
+-=.|... -..+++.+.++|||||.+.+.+.+......
T Consensus 127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~ 172 (227)
T COG0220 127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW 172 (227)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence 76666532 247999999999999999998776554443
No 168
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.07 E-value=2.7e-06 Score=74.76 Aligned_cols=93 Identities=19% Similarity=0.230 Sum_probs=70.1
Q ss_pred cCCceeeccCcCCcccc--CCCCC-CCeEEEEeCCHHHHHhcCCC---------CcEEE-eccCCCCCCC-CCCCCeeEE
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGYK-QDRIVGMGMNEEELKRNPVL---------TEYVV-QDLNLNPKLP-FEDNSFDVI 202 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~~-~~~v~gvD~S~~ml~~a~~~---------~~~~~-~D~~~~~~lp-f~~~~FD~V 202 (299)
..++||++|.+.|.+.+ +...+ +.+++.+|+++++.+.|+++ ++.+. +|.- +.+. ...++||+|
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal--~~l~~~~~~~fDli 136 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDAL--DVLSRLLDGSFDLV 136 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHH--HHHHhccCCCccEE
Confidence 45789999999997444 44445 67999999999999988774 55566 3541 2222 457899999
Q ss_pred EecccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 203 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 203 is~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
+.-. .-.+.+++|+.+.+.|+|||.++++
T Consensus 137 FIDa---dK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 137 FIDA---DKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred EEeC---ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 9653 2235688999999999999999986
No 169
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.04 E-value=2.2e-06 Score=72.91 Aligned_cols=98 Identities=20% Similarity=0.211 Sum_probs=60.7
Q ss_pred CCceeeccCcCCcccc-CCCC-CCCeEEEEeCCHHHHHhcCC-----------CCcEEEeccCCCCCC--C-CCCCCeeE
Q 022305 138 YSEVFPPSNTPGVSHF-PPGY-KQDRIVGMGMNEEELKRNPV-----------LTEYVVQDLNLNPKL--P-FEDNSFDV 201 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~-~~~~-~~~~v~gvD~S~~ml~~a~~-----------~~~~~~~D~~~~~~l--p-f~~~~FD~ 201 (299)
..+||++|||+|...+ .... ...+|+..|.++ .++..+. .+.+...|-. +.. . ...++||+
T Consensus 46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg--~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 46 GKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWG--DELDSDLLEPHSFDV 122 (173)
T ss_dssp TSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TT--S-HHHHHHS-SSBSE
T ss_pred CceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEec--CcccccccccccCCE
Confidence 3689999999997222 2222 568999999998 6653222 2555666652 111 1 34568999
Q ss_pred EEecccccccCCHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 202 ITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 202 Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
|+++.++..-...+.+++-+.++|+|+|.+++....+
T Consensus 123 IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 9999999988788899999999999999888877654
No 170
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.03 E-value=7.2e-06 Score=78.09 Aligned_cols=93 Identities=9% Similarity=0.043 Sum_probs=65.1
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCC-CCCCCeeEEEecccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLP-FEDNSFDVITNVVSV 208 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lp-f~~~~FD~Vis~~~l 208 (299)
..++||++||+|...+.....+.+|+|+|+|+.+++.++++ ++++.+|+ .++. -..++||+|+..==
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~---~~~~~~~~~~~D~vi~DPP- 309 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDS---AKFATAQMSAPELVLVNPP- 309 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH---HHHHHhcCCCCCEEEECCC-
Confidence 36899999999985555555668999999999999876642 67888888 4322 12246999987621
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.-.-..++++.+. .++|++.++++..
T Consensus 310 -r~G~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 310 -RRGIGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred -CCCCcHHHHHHHH-hcCCCeEEEEEeC
Confidence 2112245555554 4799999999854
No 171
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.03 E-value=1.8e-06 Score=75.36 Aligned_cols=93 Identities=20% Similarity=0.288 Sum_probs=68.3
Q ss_pred cCCceeeccCcCCcccc--CCCC-CCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCC-----CCCCCe
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGY-KQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLP-----FEDNSF 199 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~-~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lp-----f~~~~F 199 (299)
...+||++|+++|.+.+ +... .+++|+.+|++++..+.|++ +++++.+|.. +.++ .+.++|
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~--~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDAL--EVLPELANDGEEGQF 122 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HH--HHHHHHHHTTTTTSE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccH--hhHHHHHhccCCCce
Confidence 45799999999997444 3333 36899999999999987754 3788998872 2222 113589
Q ss_pred eEEEecccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 200 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 200 D~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
|+|+.-.- -.+...++..+.+.|+|||.++++
T Consensus 123 D~VFiDa~---K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 123 DFVFIDAD---KRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp EEEEEEST---GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEccc---ccchhhHHHHHhhhccCCeEEEEc
Confidence 99997642 235678889999999999999997
No 172
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.97 E-value=1.8e-05 Score=71.81 Aligned_cols=145 Identities=17% Similarity=0.082 Sum_probs=92.8
Q ss_pred HHHHhh--hcCCceeeccCcCCcccc--CCCCC--CCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCC
Q 022305 130 AIAALT--KYYSEVFPPSNTPGVSHF--PPGYK--QDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPF 194 (299)
Q Consensus 130 ~~~~l~--~~~~~vLDiGcG~G~~~~--~~~~~--~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf 194 (299)
.+.+|. ...-+||||.||.|.-.+ ....+ ..+|.-.|.|+.-++..++. ++|.++|+....++.-
T Consensus 126 ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~ 205 (311)
T PF12147_consen 126 AIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAA 205 (311)
T ss_pred HHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhc
Confidence 344453 245689999999996322 12223 26899999999998865541 4899999843334433
Q ss_pred CCCCeeEEEecccccccCC---HHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhh-hhcCC-Cchh---hhH--HHHH
Q 022305 195 EDNSFDVITNVVSVDYLTK---PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIW-TSTGD-ADHV---MIV--GAYF 264 (299)
Q Consensus 195 ~~~~FD~Vis~~~l~~~~d---~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~-~~~~~-~~~~---~~~--~~~~ 264 (299)
-+-..|+++.+..++.++| ....|+.+.+.+.|||++|.+-..+..-.+.+..- .++.+ ...+ +-. .+.+
T Consensus 206 l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~L 285 (311)
T PF12147_consen 206 LDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQL 285 (311)
T ss_pred cCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHH
Confidence 3445799999999999987 35679999999999999998754433333333332 22211 1111 111 1233
Q ss_pred HHhCCCCCCe
Q 022305 265 HYAGGYEPPQ 274 (299)
Q Consensus 265 ~~~aGF~~v~ 274 (299)
-+.+||+.++
T Consensus 286 v~~aGF~K~~ 295 (311)
T PF12147_consen 286 VEAAGFEKID 295 (311)
T ss_pred HHHcCCchhh
Confidence 3779999664
No 173
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.93 E-value=9.1e-06 Score=80.32 Aligned_cols=101 Identities=12% Similarity=0.067 Sum_probs=74.4
Q ss_pred CceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCC--CCCCCCeeEEEecc
Q 022305 139 SEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKL--PFEDNSFDVITNVV 206 (299)
Q Consensus 139 ~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~l--pf~~~~FD~Vis~~ 206 (299)
..+||||||.|. ..++...|...++|+|++..-+.++.+ ++.++..|+ ..+ -++++++|.|+.++
T Consensus 349 p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~---~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 349 KVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNL---DLILNDLPNNSLDGIYILF 425 (506)
T ss_pred ceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCH---HHHHHhcCcccccEEEEEC
Confidence 458999999996 555667788999999999886654322 245566665 322 26789999999887
Q ss_pred cccccCC--------HHHHHHHHHhhccCCcEEEEEecCcchHH
Q 022305 207 SVDYLTK--------PIEVFKEMCQVLKPGGLAIVSFSNRCFWT 242 (299)
Q Consensus 207 ~l~~~~d--------~~~~l~ei~rvLkpGG~lii~~~~~~~~~ 242 (299)
-=.|... -..+++++.++|||||.+.+.+.+.....
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~ 469 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFY 469 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHH
Confidence 6666532 25799999999999999988766544333
No 174
>PLN02823 spermine synthase
Probab=97.92 E-value=1.3e-05 Score=75.16 Aligned_cols=97 Identities=19% Similarity=0.255 Sum_probs=66.7
Q ss_pred cCCceeeccCcCCccc--cCCCCCCCeEEEEeCCHHHHHhcCC------------CCcEEEeccCCCCCCCCCCCCeeEE
Q 022305 137 YYSEVFPPSNTPGVSH--FPPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKLPFEDNSFDVI 202 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~--~~~~~~~~~v~gvD~S~~ml~~a~~------------~~~~~~~D~~~~~~lpf~~~~FD~V 202 (299)
...+||.+|+|.|... +....+..+++.||+++++++.+++ +++++.+|.. .-+...+++||+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~--~~L~~~~~~yDvI 180 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDAR--AELEKRDEKFDVI 180 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhH--HHHhhCCCCccEE
Confidence 3568999999988522 2222235789999999999997764 2566777762 2233446789999
Q ss_pred Eeccccccc-CC------HHHHHH-HHHhhccCCcEEEEEec
Q 022305 203 TNVVSVDYL-TK------PIEVFK-EMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 203 is~~~l~~~-~d------~~~~l~-ei~rvLkpGG~lii~~~ 236 (299)
++-.. ... .. -.++++ .+.+.|+|||.+++...
T Consensus 181 i~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 181 IGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred EecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 97632 111 01 246787 89999999999887643
No 175
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.91 E-value=1.5e-05 Score=72.23 Aligned_cols=91 Identities=22% Similarity=0.215 Sum_probs=67.7
Q ss_pred CceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHh-------cCC----------------------------------
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKR-------NPV---------------------------------- 177 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~-------a~~---------------------------------- 177 (299)
.+||-+|||.|...+..+..+..+.|.|.|--|+-. ..+
T Consensus 58 ~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~ 137 (270)
T PF07942_consen 58 IRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPS 137 (270)
T ss_pred cEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCcc
Confidence 579999999997666666668899999999999641 000
Q ss_pred -------CCcEEEeccCCCCCCCCCC---CCeeEEEecccccccCCHHHHHHHHHhhccCCcEEE
Q 022305 178 -------LTEYVVQDLNLNPKLPFED---NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAI 232 (299)
Q Consensus 178 -------~~~~~~~D~~~~~~lpf~~---~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~li 232 (299)
+.....+|+ ..+..++ ++||+|++.+-+.-.++..++|+.|.++|||||+.|
T Consensus 138 ~~~~~~~~~sm~aGDF---~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 138 SELPSPSNLSMCAGDF---LEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred cccCCCCceeEecCcc---EEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEE
Confidence 022344454 3333333 799999999888888899999999999999999543
No 176
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.90 E-value=3.6e-06 Score=72.49 Aligned_cols=91 Identities=14% Similarity=0.178 Sum_probs=70.7
Q ss_pred CceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCCCCCCCCeeEEEecccccccCCHHHH
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEV 217 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~~~ 217 (299)
.++||+|.|.|......+..-.+|++.++|..|..+-+++ .+++. .+ +..-.+-+||+|.|.+.|.-..+|-+.
T Consensus 114 ~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynVl~-~~----ew~~t~~k~dli~clNlLDRc~~p~kL 188 (288)
T KOG3987|consen 114 VTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVLT-EI----EWLQTDVKLDLILCLNLLDRCFDPFKL 188 (288)
T ss_pred eeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCceee-eh----hhhhcCceeehHHHHHHHHhhcChHHH
Confidence 5899999999976665554457899999999999987763 22222 11 122234569999999999999999999
Q ss_pred HHHHHhhccC-CcEEEEE
Q 022305 218 FKEMCQVLKP-GGLAIVS 234 (299)
Q Consensus 218 l~ei~rvLkp-GG~lii~ 234 (299)
|+.++.+|+| .|.+|+.
T Consensus 189 L~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 189 LEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHHHHHhccCCCcEEEE
Confidence 9999999999 8877775
No 177
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.89 E-value=7.9e-06 Score=73.86 Aligned_cols=67 Identities=9% Similarity=0.044 Sum_probs=51.1
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
....|||+|||+|...........+++|+|+++.|++.+++ +++++.+|+ .+++++ .||.|+++.-.
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~---~~~~~~--~~d~Vv~NlPy 101 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDA---LKVDLP--EFNKVVSNLPY 101 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEecc---ccCCch--hceEEEEcCCc
Confidence 34689999999997444433345789999999999986654 377899999 777764 48999998543
No 178
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.89 E-value=5.7e-06 Score=76.57 Aligned_cols=90 Identities=14% Similarity=0.151 Sum_probs=64.9
Q ss_pred CceeeccCcCCc-cccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 139 SEVFPPSNTPGV-SHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 139 ~~vLDiGcG~G~-~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
+.|||+|||+|. +.+.......+|++||.|.-+ +.|.+ .++++.+.+ +++.+|.+..|+|+|-+.-
T Consensus 62 K~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkv---Edi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKV---EDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecce---EEEecCccceeEEeehhhh
Confidence 579999999997 444444445689999988754 44433 277888888 6666667889999987654
Q ss_pred ccc---CCHHHHHHHHHhhccCCcEEE
Q 022305 209 DYL---TKPIEVFKEMCQVLKPGGLAI 232 (299)
Q Consensus 209 ~~~---~d~~~~l~ei~rvLkpGG~li 232 (299)
.++ .-+..+|-.=-+.|+|||.++
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 443 234556666678999999774
No 179
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.89 E-value=9.1e-06 Score=72.87 Aligned_cols=94 Identities=17% Similarity=0.188 Sum_probs=67.5
Q ss_pred hcCCceeeccCcCCcccc--C-CCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCC---CCCee
Q 022305 136 KYYSEVFPPSNTPGVSHF--P-PGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFE---DNSFD 200 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~--~-~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~---~~~FD 200 (299)
+...+||+.|.|+|.... + ...+.++|+..|+.++..+.|+++ +++.+.|+ .+-.|. ++.||
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv---~~~g~~~~~~~~~D 115 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDV---CEEGFDEELESDFD 115 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-G---GCG--STT-TTSEE
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecce---ecccccccccCccc
Confidence 456899999999996222 2 123678999999999999988763 67888998 333332 36799
Q ss_pred EEEecccccccCCHHHHHHHHHhhc-cCCcEEEEEecC
Q 022305 201 VITNVVSVDYLTKPIEVFKEMCQVL-KPGGLAIVSFSN 237 (299)
Q Consensus 201 ~Vis~~~l~~~~d~~~~l~ei~rvL-kpGG~lii~~~~ 237 (299)
.|+.- +++|..++..+.++| ||||.+++=.|+
T Consensus 116 avfLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~ 148 (247)
T PF08704_consen 116 AVFLD-----LPDPWEAIPHAKRALKKPGGRICCFSPC 148 (247)
T ss_dssp EEEEE-----SSSGGGGHHHHHHHE-EEEEEEEEEESS
T ss_pred EEEEe-----CCCHHHHHHHHHHHHhcCCceEEEECCC
Confidence 98754 689999999999999 899988776554
No 180
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.88 E-value=9e-06 Score=74.09 Aligned_cols=67 Identities=7% Similarity=-0.035 Sum_probs=49.9
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC-----CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV-----LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~-----~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|...........+|+|+|+++.|++.+++ +++++++|+ .++++++-.+|.|+++.
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~---~~~~~~~~~~~~vv~Nl 113 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAEDNLTIIEGDA---LKVDLSELQPLKVVANL 113 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccCceEEEEChh---hcCCHHHcCcceEEEeC
Confidence 34689999999997443333334599999999999997654 477899999 77776543358888874
No 181
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.86 E-value=1.4e-05 Score=76.22 Aligned_cols=91 Identities=16% Similarity=0.229 Sum_probs=66.5
Q ss_pred CceeeccCcCCccccCCC--CCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 139 SEVFPPSNTPGVSHFPPG--YKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~--~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
.+|||++||+|...+... ....+|+++|+++.+++.++++ +++...|+ ..+....+.||+|+..-
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da---~~~l~~~~~fD~V~lDP-- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDA---NALLHEERKFDVVDIDP-- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhH---HHHHhhcCCCCEEEECC--
Confidence 479999999998555432 2235899999999999877653 34777887 33221146799999853
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
...+..++....+.+++||.+.++..
T Consensus 134 --~Gs~~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 134 --FGSPAPFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred --CCCcHHHHHHHHHHhcCCCEEEEEec
Confidence 14567888887888999999999843
No 182
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.85 E-value=5.1e-06 Score=71.06 Aligned_cols=98 Identities=21% Similarity=0.303 Sum_probs=62.2
Q ss_pred cCCceeeccCcCCccccCC-----CCC------CCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCC
Q 022305 137 YYSEVFPPSNTPGVSHFPP-----GYK------QDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFED 196 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~-----~~~------~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~ 196 (299)
....+||+-||+|+..+.. ... ..+++|.|+++++++.++++ +.+...|+ .++++.+
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~---~~l~~~~ 104 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA---RELPLPD 104 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G---GGGGGTT
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch---hhccccc
Confidence 3457999999999833211 111 12489999999999877653 67888999 8889888
Q ss_pred CCeeEEEecccccc-cC---C----HHHHHHHHHhhccCCcEEEEEecCc
Q 022305 197 NSFDVITNVVSVDY-LT---K----PIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 197 ~~FD~Vis~~~l~~-~~---d----~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
+++|+|+++-=.-- +. + ..++++++.|+|++ ..+++...+.
T Consensus 105 ~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~ 153 (179)
T PF01170_consen 105 GSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNR 153 (179)
T ss_dssp SBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCC
T ss_pred CCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCH
Confidence 89999998721111 11 1 14678999999999 4444443433
No 183
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=9.2e-06 Score=69.20 Aligned_cols=61 Identities=18% Similarity=0.323 Sum_probs=48.2
Q ss_pred CceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
..|+|+|||+|...+...+.+ .+|+|+|+.+++++.++++ ++|+++|+ ..+ ...||.|+++
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv---~~~---~~~~dtvimN 115 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADV---SDF---RGKFDTVIMN 115 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcch---hhc---CCccceEEEC
Confidence 359999999998555544444 7999999999999987764 78899998 554 3568888876
No 184
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=0.00013 Score=61.82 Aligned_cols=105 Identities=18% Similarity=0.155 Sum_probs=69.9
Q ss_pred CCceeeccCcCCc-ccc--CCCCCCCeEEEEeCCHHHHHh-------cCCCCcEEEeccCCCCCCCCCCCCeeEEEecc-
Q 022305 138 YSEVFPPSNTPGV-SHF--PPGYKQDRIVGMGMNEEELKR-------NPVLTEYVVQDLNLNPKLPFEDNSFDVITNVV- 206 (299)
Q Consensus 138 ~~~vLDiGcG~G~-~~~--~~~~~~~~v~gvD~S~~ml~~-------a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~- 206 (299)
..-++++|||+|. ..+ ....++....++|+|+.+++. ++.+++.+..|+. -....++.|+++-+=
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~----~~l~~~~VDvLvfNPP 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLL----SGLRNESVDVLVFNPP 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHH----hhhccCCccEEEECCC
Confidence 3458999999996 222 222266789999999999885 3335778888873 223448899888551
Q ss_pred -cc--------c-----cc--CC----HHHHHHHHHhhccCCcEEEEEecCcchHHHHHH
Q 022305 207 -SV--------D-----YL--TK----PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAIS 246 (299)
Q Consensus 207 -~l--------~-----~~--~d----~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~ 246 (299)
+. + |. .| ..+++.++-.+|.|.|.+++-....+...+.+.
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k 179 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILK 179 (209)
T ss_pred cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHH
Confidence 11 1 11 11 346777788889999999887666665555443
No 185
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=2.2e-05 Score=67.87 Aligned_cols=102 Identities=21% Similarity=0.229 Sum_probs=70.8
Q ss_pred ccHHHHHHh---hhcCCceeeccCcCCc--cccC--CCCCCCeEEEEeCCHHHHHhcCCC------------------Cc
Q 022305 126 IDDPAIAAL---TKYYSEVFPPSNTPGV--SHFP--PGYKQDRIVGMGMNEEELKRNPVL------------------TE 180 (299)
Q Consensus 126 l~~~~~~~l---~~~~~~vLDiGcG~G~--~~~~--~~~~~~~v~gvD~S~~ml~~a~~~------------------~~ 180 (299)
+...+++.| .....+.||+|+|+|. ..+. ...++...+|||.-++.++.++++ ..
T Consensus 68 mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ 147 (237)
T KOG1661|consen 68 MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS 147 (237)
T ss_pred HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence 334445555 3456789999999995 1111 122345669999999998866543 45
Q ss_pred EEEeccCCCCCCCCCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 181 YVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 181 ~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
++++|. ...--+.++||.|.+... ..+..+++...|||||.++|-..
T Consensus 148 ivvGDg---r~g~~e~a~YDaIhvGAa------a~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 148 IVVGDG---RKGYAEQAPYDAIHVGAA------ASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred EEeCCc---cccCCccCCcceEEEccC------ccccHHHHHHhhccCCeEEEeec
Confidence 778888 666667789999999843 34455778889999998888543
No 186
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.78 E-value=1.9e-05 Score=70.00 Aligned_cols=88 Identities=14% Similarity=0.096 Sum_probs=54.4
Q ss_pred CceeeccCcCCccccCCCCC-CCeEEEEeCCHHHHHh-cCCCCc---EEEeccCC--CCCCCCCCCCeeEEEeccccccc
Q 022305 139 SEVFPPSNTPGVSHFPPGYK-QDRIVGMGMNEEELKR-NPVLTE---YVVQDLNL--NPKLPFEDNSFDVITNVVSVDYL 211 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~-~~~v~gvD~S~~ml~~-a~~~~~---~~~~D~~~--~~~lpf~~~~FD~Vis~~~l~~~ 211 (299)
..+||+|||+|......... ..+|+|+|++++|+.. .++... +...|+.. .+.++.+-..+|+++++.++
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~~--- 153 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLIS--- 153 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehHh---
Confidence 46999999999743333223 4689999999988874 333322 33334410 01122222367877766543
Q ss_pred CCHHHHHHHHHhhccCCcEEEEEe
Q 022305 212 TKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 212 ~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
.|..+.+.|+| |.+++-+
T Consensus 154 -----~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 154 -----ILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred -----HHHHHHHHhCc-CeEEEEc
Confidence 47889999999 8666544
No 187
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.77 E-value=5.1e-05 Score=68.42 Aligned_cols=160 Identities=17% Similarity=0.179 Sum_probs=84.3
Q ss_pred cCCceeeccCc---CCccccC--CCCCCCeEEEEeCCHHHHHhcCC------C--CcEEEeccCCCCCC---CCCCCCee
Q 022305 137 YYSEVFPPSNT---PGVSHFP--PGYKQDRIVGMGMNEEELKRNPV------L--TEYVVQDLNLNPKL---PFEDNSFD 200 (299)
Q Consensus 137 ~~~~vLDiGcG---~G~~~~~--~~~~~~~v~gvD~S~~ml~~a~~------~--~~~~~~D~~~~~~l---pf~~~~FD 200 (299)
-+...||+||| .|..|-. ...+.++|+.+|..|-.+..++. . ..++.+|+...+.+ |--.+-+|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 35689999999 3332221 22478999999999988886654 2 67899998321111 00112333
Q ss_pred -----EEEecccccccC---CHHHHHHHHHhhccCCcEEEEEecCcch----HHHHHHhhhhcCCCchhhhHHHHHHHhC
Q 022305 201 -----VITNVVSVDYLT---KPIEVFKEMCQVLKPGGLAIVSFSNRCF----WTKAISIWTSTGDADHVMIVGAYFHYAG 268 (299)
Q Consensus 201 -----~Vis~~~l~~~~---d~~~~l~ei~rvLkpGG~lii~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~a 268 (299)
.|+...+|||++ ++..+++.+...|-||.+++|+...... .......+.......+.+-..+.-..-.
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~ 227 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSREEIAAFFD 227 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-HHHHHHCCT
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCHHHHHHHcC
Confidence 577788899995 5889999999999999999998654322 2333445555555555554444444446
Q ss_pred CCCCCe--eeecC---CCCC-------CCCCeEEEEEEec
Q 022305 269 GYEPPQ--AVDIS---PNPG-------RSDPMYVVYSRKA 296 (299)
Q Consensus 269 GF~~v~--~~~~~---~~~~-------~~~p~~~v~arK~ 296 (299)
||+.++ ++.++ |... ..-.+|.-+||||
T Consensus 228 g~elvePGlv~~~~WrP~~~~~~~~~~~~~~~~~gVarKp 267 (267)
T PF04672_consen 228 GLELVEPGLVPVPRWRPDGPEPDPPDPARVWMYGGVARKP 267 (267)
T ss_dssp TSEE-TT-SEEGGGSS-STTTTTT--GGGGSEEEEEEE--
T ss_pred CCccCCCceecccccCCCCCCcCCCCccceEEEEEEEeCC
Confidence 787643 33332 1111 1235699999996
No 188
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.76 E-value=0.00011 Score=71.85 Aligned_cols=99 Identities=19% Similarity=0.175 Sum_probs=66.8
Q ss_pred hcCCceeeccCcCCc--cccCCCCC-CCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCC-CCCCCeeEEE
Q 022305 136 KYYSEVFPPSNTPGV--SHFPPGYK-QDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLP-FEDNSFDVIT 203 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~~~~-~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lp-f~~~~FD~Vi 203 (299)
+...+|||+++|+|. .+++..+. .+.|+++|+++.-++..+++ +.....|. ..+. ...+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~---~~~~~~~~~~fD~IL 188 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDG---RVFGAALPETFDAIL 188 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCch---hhhhhhchhhcCeEE
Confidence 355789999999996 44444332 36899999999887755442 44555666 4442 2346799999
Q ss_pred ----ecccccccCCH------------------HHHHHHHHhhccCCcEEEEEecC
Q 022305 204 ----NVVSVDYLTKP------------------IEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 204 ----s~~~l~~~~d~------------------~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
|+..-..-.+| .++|.+..+.|||||.++-++-.
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 55322211222 46888999999999998887654
No 189
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.76 E-value=1.4e-05 Score=71.83 Aligned_cols=100 Identities=18% Similarity=0.190 Sum_probs=70.9
Q ss_pred HHHHhhh--cCCceeeccCcCCccccC--CCC-CCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCC-
Q 022305 130 AIAALTK--YYSEVFPPSNTPGVSHFP--PGY-KQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPF- 194 (299)
Q Consensus 130 ~~~~l~~--~~~~vLDiGcG~G~~~~~--~~~-~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf- 194 (299)
++..+.+ ...+||++|+++|.+.+. ... ++++++.+|++++..+.|++ +++++.+|.. +.++-
T Consensus 70 lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~--e~L~~l 147 (247)
T PLN02589 70 FLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL--PVLDQM 147 (247)
T ss_pred HHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHH--HHHHHH
Confidence 3444433 356899999999975442 222 46799999999999887654 3788888873 23331
Q ss_pred -----CCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 195 -----EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 195 -----~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
..++||+|+.-.- -.+...+++.+.+.|+|||.++++
T Consensus 148 ~~~~~~~~~fD~iFiDad---K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 148 IEDGKYHGTFDFIFVDAD---KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HhccccCCcccEEEecCC---HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 1368999997632 234567888889999999999886
No 190
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.69 E-value=1.7e-05 Score=75.47 Aligned_cols=98 Identities=14% Similarity=0.137 Sum_probs=73.9
Q ss_pred CCceeeccCcCCccccCCCCCCC-eEEEEeCCHHHHHhcCCC----------CcEEEeccCCCCCCC---CCCCCeeEEE
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQD-RIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKLP---FEDNSFDVIT 203 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~-~v~gvD~S~~ml~~a~~~----------~~~~~~D~~~~~~lp---f~~~~FD~Vi 203 (299)
.++||++=|=+|...+.....++ +||+||+|...|+.|+++ .+|+++|+- +-+. -...+||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf--~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVF--KWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHH--HHHHHHHhcCCcccEEE
Confidence 57899999989987777777777 999999999999988764 578999972 2222 2335899999
Q ss_pred ec---------ccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 204 NV---------VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 204 s~---------~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
.- ....-..|..+.+..+.++|+|||.+++....
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 32 11222346778999999999999998887544
No 191
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.69 E-value=2.7e-05 Score=75.69 Aligned_cols=90 Identities=13% Similarity=0.152 Sum_probs=58.3
Q ss_pred CceeeccCcCCcccc-CC-----CCCCCeEEEEeCCHHHHHhc---------CCCCcEEEeccCCCCCCCCCCCCeeEEE
Q 022305 139 SEVFPPSNTPGVSHF-PP-----GYKQDRIVGMGMNEEELKRN---------PVLTEYVVQDLNLNPKLPFEDNSFDVIT 203 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~-~~-----~~~~~~v~gvD~S~~ml~~a---------~~~~~~~~~D~~~~~~lpf~~~~FD~Vi 203 (299)
..|+|+|||+|.... .. .....+|++|+-|+.+.... ..+++++.+|+ +++..+. .+|+||
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~---r~v~lpe-kvDIIV 263 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDM---REVELPE-KVDIIV 263 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-T---TTSCHSS--EEEEE
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcc---cCCCCCC-ceeEEE
Confidence 459999999996211 11 11236999999998765321 12489999999 7877654 799999
Q ss_pred eccccccc--CCHHHHHHHHHhhccCCcEEE
Q 022305 204 NVVSVDYL--TKPIEVFKEMCQVLKPGGLAI 232 (299)
Q Consensus 204 s~~~l~~~--~d~~~~l~ei~rvLkpGG~li 232 (299)
|=..-... +-..+.|....|.|||||.+|
T Consensus 264 SElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 264 SELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp E---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 85432222 234678999999999999664
No 192
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.60 E-value=7.8e-05 Score=66.97 Aligned_cols=100 Identities=14% Similarity=0.102 Sum_probs=66.3
Q ss_pred hcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC------------CCcEEEeccCCCCCCCCCCC-Cee
Q 022305 136 KYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKLPFEDN-SFD 200 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~------------~~~~~~~D~~~~~~lpf~~~-~FD 200 (299)
....+||=+|.|.|. ..+....+..+++.||+++.+++.+++ +++++.+|.. .-+.-..+ +||
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~--~~l~~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGR--KFLKETQEEKYD 152 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHH--HHHHTSSST-EE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhH--HHHHhccCCccc
Confidence 356899999998875 333333335799999999999997654 3567888862 11222234 899
Q ss_pred EEEecccccccCC----HHHHHHHHHhhccCCcEEEEEecC
Q 022305 201 VITNVVSVDYLTK----PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 201 ~Vis~~~l~~~~d----~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+|+.-..-...+. -.++++.+.+.|+|||.+++...+
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~ 193 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGS 193 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccC
Confidence 9997543222222 268999999999999999987643
No 193
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.59 E-value=0.00021 Score=66.43 Aligned_cols=89 Identities=22% Similarity=0.238 Sum_probs=64.6
Q ss_pred CCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHh-cCCC---CcEEEeccCCCCCCCCCCCCeeEEEeccccccc
Q 022305 138 YSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKR-NPVL---TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 211 (299)
Q Consensus 138 ~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~-a~~~---~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~ 211 (299)
....+|+|.|.|. ..+...++ ++-|+++....+.. ++.. ++.+.+|+- .+.|- -|+|++-++|||+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~~gV~~v~gdmf--q~~P~----~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLAPGVEHVAGDMF--QDTPK----GDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhcCCcceeccccc--ccCCC----cCeEEEEeecccC
Confidence 4568999999886 44444443 47777777666543 3333 688888873 23443 2599999999999
Q ss_pred CC--HHHHHHHHHhhccCCcEEEEE
Q 022305 212 TK--PIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 212 ~d--~~~~l~ei~rvLkpGG~lii~ 234 (299)
.| ..++|++++..|+|||.+++-
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEE
Confidence 74 579999999999999977764
No 194
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.52 E-value=7e-05 Score=64.33 Aligned_cols=87 Identities=16% Similarity=0.149 Sum_probs=64.7
Q ss_pred ceeeccCcCCccc--cCCCCCCCeEEEEeCCHHHHHhcC--------CCCcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 140 EVFPPSNTPGVSH--FPPGYKQDRIVGMGMNEEELKRNP--------VLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 140 ~vLDiGcG~G~~~--~~~~~~~~~v~gvD~S~~ml~~a~--------~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
+++|+|+|.|.-- ++..+|..+++.+|.+..-...-+ .+++++...+ ++ +....+||+|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~---E~-~~~~~~fd~v~aRAv-- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRA---EE-PEYRESFDVVTARAV-- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-H---HH-TTTTT-EEEEEEESS--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeee---cc-cccCCCccEEEeehh--
Confidence 7999999999622 234457789999999986654322 2477888888 55 556788999999864
Q ss_pred ccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 210 YLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 210 ~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
..+...++-+.+.||+||.+++-
T Consensus 125 --~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 125 --APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp --SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred --cCHHHHHHHHHHhcCCCCEEEEE
Confidence 46788899999999999988774
No 195
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.51 E-value=0.00035 Score=65.04 Aligned_cols=106 Identities=11% Similarity=0.063 Sum_probs=69.1
Q ss_pred CceeeccCcCCcc------ccCCCCCCCeEEEEeCCHHHHHhcCCC--------Cc--EEEeccCCCCC-CCC--CCCCe
Q 022305 139 SEVFPPSNTPGVS------HFPPGYKQDRIVGMGMNEEELKRNPVL--------TE--YVVQDLNLNPK-LPF--EDNSF 199 (299)
Q Consensus 139 ~~vLDiGcG~G~~------~~~~~~~~~~v~gvD~S~~ml~~a~~~--------~~--~~~~D~~~~~~-lpf--~~~~F 199 (299)
..++|+|||.|.- .+........++++|+|.++|+.+.+. ++ -+++|...... ++- ..+..
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~ 157 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRP 157 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCc
Confidence 4799999999962 232222357899999999999865432 22 36676631111 221 12345
Q ss_pred eEEEec-ccccccCCH--HHHHHHHHh-hccCCcEEEEEecCcchHHHH
Q 022305 200 DVITNV-VSVDYLTKP--IEVFKEMCQ-VLKPGGLAIVSFSNRCFWTKA 244 (299)
Q Consensus 200 D~Vis~-~~l~~~~d~--~~~l~ei~r-vLkpGG~lii~~~~~~~~~~~ 244 (299)
.+++.. .++.+++.. ..+|+++.+ .|+|||.++|.+-........
T Consensus 158 r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l 206 (319)
T TIGR03439 158 TTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKV 206 (319)
T ss_pred cEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHH
Confidence 666654 578888644 478999999 999999999987544333333
No 196
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.51 E-value=0.00011 Score=66.07 Aligned_cols=66 Identities=11% Similarity=0.051 Sum_probs=48.0
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCCCee---EEEeccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFD---VITNVVS 207 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~~FD---~Vis~~~ 207 (299)
...+|||+|||+|............++++|+++.|++.+++ +++++.+|+ ..++++ .|| +|+++.-
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~---~~~~~~--~~d~~~~vvsNlP 103 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGDA---LKVDLP--DFPKQLKVVSNLP 103 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECch---hcCChh--HcCCcceEEEcCC
Confidence 34689999999997443333334679999999999987654 367888898 777764 466 7777654
No 197
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.51 E-value=9.9e-05 Score=63.65 Aligned_cols=95 Identities=8% Similarity=-0.106 Sum_probs=60.5
Q ss_pred CceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCC-C-C-CCC-CeeEEEe
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKL-P-F-EDN-SFDVITN 204 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~l-p-f-~~~-~FD~Vis 204 (299)
.++||++||+|...+.....+ ..|+++|.++.+++.++++ ++++.+|+ ... . + ..+ .||+|+.
T Consensus 51 ~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~---~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSA---LRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhH---HHHHHHhhccCCCceEEEE
Confidence 579999999997544443334 4899999999998765542 56777887 221 1 1 122 4787776
Q ss_pred cccccccCCHHHHHHHH--HhhccCCcEEEEEecC
Q 022305 205 VVSVDYLTKPIEVFKEM--CQVLKPGGLAIVSFSN 237 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei--~rvLkpGG~lii~~~~ 237 (299)
-=-.. -....+.++.+ ..+|+++|.++++...
T Consensus 128 DPPy~-~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFF-NGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CcCCC-CCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 42111 12234444444 3479999999998654
No 198
>PRK04148 hypothetical protein; Provisional
Probab=97.49 E-value=8.4e-05 Score=60.36 Aligned_cols=88 Identities=11% Similarity=0.052 Sum_probs=59.3
Q ss_pred CceeeccCcCCc-cccCCCCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCCCCC-CCCeeEEEecccccccCCHH
Q 022305 139 SEVFPPSNTPGV-SHFPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLPFE-DNSFDVITNVVSVDYLTKPI 215 (299)
Q Consensus 139 ~~vLDiGcG~G~-~~~~~~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~lpf~-~~~FD~Vis~~~l~~~~d~~ 215 (299)
.++||+|||.|. -.......+.+|+++|+++..++.+++. ++++++|+ .+-.++ -+.+|+|.+..- -++..
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDl---f~p~~~~y~~a~liysirp---p~el~ 91 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDL---FNPNLEIYKNAKLIYSIRP---PRDLQ 91 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcC---CCCCHHHHhcCCEEEEeCC---CHHHH
Confidence 579999999884 2222233578999999999999988775 78899998 443332 356899988742 23445
Q ss_pred HHHHHHHhhccCCcEEEEE
Q 022305 216 EVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 216 ~~l~ei~rvLkpGG~lii~ 234 (299)
..+.++.+-+. .-++|.
T Consensus 92 ~~~~~la~~~~--~~~~i~ 108 (134)
T PRK04148 92 PFILELAKKIN--VPLIIK 108 (134)
T ss_pred HHHHHHHHHcC--CCEEEE
Confidence 55555555443 455554
No 199
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.48 E-value=6.4e-05 Score=69.98 Aligned_cols=69 Identities=12% Similarity=0.072 Sum_probs=44.6
Q ss_pred CCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCCC----------CcEEE-eccCC-CCCCCCCCCCeeEEE
Q 022305 138 YSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPVL----------TEYVV-QDLNL-NPKLPFEDNSFDVIT 203 (299)
Q Consensus 138 ~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~----------~~~~~-~D~~~-~~~lpf~~~~FD~Vi 203 (299)
..++||||||+|. ..+....++.+++|+|+++.+++.|+++ +++.. .|... ...+..+++.||+|+
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDliv 194 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATL 194 (321)
T ss_pred CceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEE
Confidence 4689999999884 2333444578999999999999987653 23332 22200 011112467899999
Q ss_pred ecc
Q 022305 204 NVV 206 (299)
Q Consensus 204 s~~ 206 (299)
|+=
T Consensus 195 cNP 197 (321)
T PRK11727 195 CNP 197 (321)
T ss_pred eCC
Confidence 983
No 200
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.45 E-value=5.2e-05 Score=69.85 Aligned_cols=65 Identities=15% Similarity=0.078 Sum_probs=48.1
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
....|||+|||.|...........+|+++|+++.|++.+++ +++++.+|+ ...++ ..||.|+++.
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da---l~~~~--~~~d~VvaNl 109 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA---LKTEF--PYFDVCVANV 109 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH---hhhcc--cccCEEEecC
Confidence 34689999999997443333345789999999999986543 377889998 55544 4689998864
No 201
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.42 E-value=0.00024 Score=59.41 Aligned_cols=95 Identities=13% Similarity=0.215 Sum_probs=73.1
Q ss_pred CceeeccCcCCc---cccCCCCCCCeEEEEeCCHHHHHhcCC---CCcEEEeccCCCCCCC-----CCCCCeeEEEeccc
Q 022305 139 SEVFPPSNTPGV---SHFPPGYKQDRIVGMGMNEEELKRNPV---LTEYVVQDLNLNPKLP-----FEDNSFDVITNVVS 207 (299)
Q Consensus 139 ~~vLDiGcG~G~---~~~~~~~~~~~v~gvD~S~~ml~~a~~---~~~~~~~D~~~~~~lp-----f~~~~FD~Vis~~~ 207 (299)
.-||++|.|+|. ..+....+...++.++.|++....-.+ .++++.+|. ..+. +.+..||.|+|..=
T Consensus 50 lpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda---~~l~~~l~e~~gq~~D~viS~lP 126 (194)
T COG3963 50 LPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDA---FDLRTTLGEHKGQFFDSVISGLP 126 (194)
T ss_pred CeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccch---hhHHHHHhhcCCCeeeeEEeccc
Confidence 469999999996 444555567899999999998876554 377888887 4442 66788999999987
Q ss_pred ccccC--CHHHHHHHHHhhccCCcEEE-EEec
Q 022305 208 VDYLT--KPIEVFKEMCQVLKPGGLAI-VSFS 236 (299)
Q Consensus 208 l~~~~--d~~~~l~ei~rvLkpGG~li-i~~~ 236 (299)
+-.++ .-.+.|+++...|.+||.++ |+..
T Consensus 127 ll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 127 LLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 77775 44678999999999999654 5544
No 202
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.0034 Score=54.26 Aligned_cols=158 Identities=18% Similarity=0.212 Sum_probs=95.5
Q ss_pred hccccHHHHHHhh----hcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHH----hcCC--CCcEEEeccCCCC
Q 022305 123 VTHIDDPAIAALT----KYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELK----RNPV--LTEYVVQDLNLNP 190 (299)
Q Consensus 123 ~~~l~~~~~~~l~----~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~----~a~~--~~~~~~~D~~~~~ 190 (299)
...+...++..|. +.-.+||=+|..+|| +|.........++||++|+.+.. .+++ ++--+..|++..+
T Consensus 58 RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~ 137 (231)
T COG1889 58 RSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPE 137 (231)
T ss_pred hhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcH
Confidence 3445555555553 345789999998887 78877777789999999987754 4444 4556778874322
Q ss_pred CCCCCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHH--HhC
Q 022305 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFH--YAG 268 (299)
Q Consensus 191 ~lpf~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~a 268 (299)
...+--+..|+|+.--+ --++..-+..++..-||+||.+++.+-.++- ..+. +.-..+.+... +..
T Consensus 138 ~Y~~~Ve~VDviy~DVA--Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSI--------dvT~--dp~~vf~~ev~kL~~~ 205 (231)
T COG1889 138 KYRHLVEKVDVIYQDVA--QPNQAEILADNAEFFLKKGGYVVIAIKARSI--------DVTA--DPEEVFKDEVEKLEEG 205 (231)
T ss_pred HhhhhcccccEEEEecC--CchHHHHHHHHHHHhcccCCeEEEEEEeecc--------cccC--CHHHHHHHHHHHHHhc
Confidence 22223355888876421 0112344678889999999988776543321 1111 11223333222 668
Q ss_pred CCCCCeeeecCCCCCCCCCeEEEEEEe
Q 022305 269 GYEPPQAVDISPNPGRSDPMYVVYSRK 295 (299)
Q Consensus 269 GF~~v~~~~~~~~~~~~~p~~~v~arK 295 (299)
||++.+..++.| ..+| .+.|++++
T Consensus 206 ~f~i~e~~~LeP--ye~D-H~~i~~~~ 229 (231)
T COG1889 206 GFEILEVVDLEP--YEKD-HALIVAKY 229 (231)
T ss_pred CceeeEEeccCC--cccc-eEEEEEee
Confidence 999999877764 3333 34555544
No 203
>PRK00536 speE spermidine synthase; Provisional
Probab=97.36 E-value=0.00045 Score=62.55 Aligned_cols=90 Identities=17% Similarity=0.122 Sum_probs=63.2
Q ss_pred hcCCceeeccCcCCc-cccCCCCCCCeEEEEeCCHHHHHhcCCC------------CcEEEeccCCCCCCCCCCCCeeEE
Q 022305 136 KYYSEVFPPSNTPGV-SHFPPGYKQDRIVGMGMNEEELKRNPVL------------TEYVVQDLNLNPKLPFEDNSFDVI 202 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~-~~~~~~~~~~~v~gvD~S~~ml~~a~~~------------~~~~~~D~~~~~~lpf~~~~FD~V 202 (299)
...++||=+|.|-|. ..-..+++ .+|+-|||.+++++.+++. ++++. .+ . .-..++||+|
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~---~--~~~~~~fDVI 143 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QL---L--DLDIKKYDLI 143 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hh---h--hccCCcCCEE
Confidence 456899999999664 33333434 4999999999999988772 22222 11 1 1123689999
Q ss_pred EecccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 203 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 203 is~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
|+-.. ....+.+.++|.|+|||.++..-.+
T Consensus 144 IvDs~-----~~~~fy~~~~~~L~~~Gi~v~Qs~s 173 (262)
T PRK00536 144 ICLQE-----PDIHKIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_pred EEcCC-----CChHHHHHHHHhcCCCcEEEECCCC
Confidence 97643 4478889999999999999886443
No 204
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=97.35 E-value=0.0003 Score=54.84 Aligned_cols=92 Identities=18% Similarity=0.344 Sum_probs=46.7
Q ss_pred CeeEEEecccccccC------CHHHHHHHHHhhccCCcEEEEEecCcchHHH-------HHHhhhhcCCCchhhhHHHHH
Q 022305 198 SFDVITNVVSVDYLT------KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTK-------AISIWTSTGDADHVMIVGAYF 264 (299)
Q Consensus 198 ~FD~Vis~~~l~~~~------d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 264 (299)
.||+|+|..+..|+. -+..+|+.+++.|+|||.+|++-.++..+.+ ....+.... -+...+.+++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~--lrP~~F~~~L 78 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIK--LRPDQFEDYL 78 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH------GGGHHHHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceE--EChHHHHHHH
Confidence 499999999988772 3568999999999999999998654333221 112222211 0111345566
Q ss_pred HH-hCCCCCCeeeecCCC--CCCCCCeEEE
Q 022305 265 HY-AGGYEPPQAVDISPN--PGRSDPMYVV 291 (299)
Q Consensus 265 ~~-~aGF~~v~~~~~~~~--~~~~~p~~~v 291 (299)
.. .-||..++....... .|...|.++.
T Consensus 79 ~~~evGF~~~e~~~~~~~~~~gF~RpI~lf 108 (110)
T PF06859_consen 79 LEPEVGFSSVEELGVPENSSKGFDRPIYLF 108 (110)
T ss_dssp TSTTT---EEEEE-------------EEEE
T ss_pred HhcccceEEEEEcccCCCCCCCCCCcEEEE
Confidence 54 479999987777543 3555676654
No 205
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.0024 Score=60.43 Aligned_cols=99 Identities=22% Similarity=0.259 Sum_probs=65.4
Q ss_pred hcCCceeeccCcCCc--cccCCCCCC--CeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCC---CCCCCee
Q 022305 136 KYYSEVFPPSNTPGV--SHFPPGYKQ--DRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP---FEDNSFD 200 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~~~~~--~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lp---f~~~~FD 200 (299)
+...+|||+++++|. .+++....+ ..|+++|+++.=++..++ ++..+..|. ..++ ...+.||
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~---~~~~~~~~~~~~fD 231 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA---RRLAELLPGGEKFD 231 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc---ccccccccccCcCc
Confidence 455799999999885 666555543 567999999976654333 245666776 3333 2233699
Q ss_pred EEE----ec--ccccccCC----------------HHHHHHHHHhhccCCcEEEEEecC
Q 022305 201 VIT----NV--VSVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 201 ~Vi----s~--~~l~~~~d----------------~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
.|+ |+ .++.--++ -.++|....++|||||.++-++-.
T Consensus 232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 999 22 23321111 136888999999999999888654
No 206
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.33 E-value=0.00017 Score=68.41 Aligned_cols=91 Identities=8% Similarity=0.021 Sum_probs=59.8
Q ss_pred CceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCC-CC-CC-------------
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPK-LP-FE------------- 195 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~-lp-f~------------- 195 (299)
.++||++||+|+..+.......+|+|+|+|+.|++.++++ ++++.+|+ .+ ++ +.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~---~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSA---EEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCH---HHHHHHHhhcccccccccccc
Confidence 4799999999985555554456899999999999876653 66888887 33 11 10
Q ss_pred -CCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 196 -DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 196 -~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
...||+|+.-== ...-..++++.+. +|++.++++...
T Consensus 285 ~~~~~D~v~lDPP--R~G~~~~~l~~l~---~~~~ivyvSC~p 322 (362)
T PRK05031 285 KSYNFSTIFVDPP--RAGLDDETLKLVQ---AYERILYISCNP 322 (362)
T ss_pred cCCCCCEEEECCC--CCCCcHHHHHHHH---ccCCEEEEEeCH
Confidence 225899886411 1111244555554 478888888543
No 207
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.31 E-value=0.0003 Score=64.32 Aligned_cols=95 Identities=16% Similarity=0.179 Sum_probs=68.1
Q ss_pred CCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCCC------------CcEEEeccCCCCCC-CCCCCCeeEE
Q 022305 138 YSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPVL------------TEYVVQDLNLNPKL-PFEDNSFDVI 202 (299)
Q Consensus 138 ~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~------------~~~~~~D~~~~~~l-pf~~~~FD~V 202 (299)
..+||-+|.|.|. ..+.......+++.|||++..++.+++. ++.+..|. .+. .-..++||+|
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg---~~~v~~~~~~fDvI 153 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDG---VEFLRDCEEKFDVI 153 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccH---HHHHHhCCCcCCEE
Confidence 3699999999774 3333343468999999999999987652 46666776 222 2223489999
Q ss_pred EecccccccCCH------HHHHHHHHhhccCCcEEEEEecC
Q 022305 203 TNVVSVDYLTKP------IEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 203 is~~~l~~~~d~------~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
++-.+=. . .| ..+++.++|.|+++|.++....+
T Consensus 154 i~D~tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 154 IVDSTDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred EEcCCCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 9765433 2 23 78999999999999999887333
No 208
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.24 E-value=0.00027 Score=64.54 Aligned_cols=95 Identities=15% Similarity=0.184 Sum_probs=59.1
Q ss_pred CCceeeccCcCCccccCCC--C-CCCeEEEEeCCHHHHHhcCCCCcEE--------EeccCCCCCCCCCCCCeeEEEecc
Q 022305 138 YSEVFPPSNTPGVSHFPPG--Y-KQDRIVGMGMNEEELKRNPVLTEYV--------VQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~--~-~~~~v~gvD~S~~ml~~a~~~~~~~--------~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
..+|||+|||+|++.++.. + ...+++++|.|+.|++.++...+-. ..+. ..+..++. ..|+|++++
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~--~~DLvi~s~ 110 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVL-YRDFLPFP--PDDLVIASY 110 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhh-hcccccCC--CCcEEEEeh
Confidence 3589999999998544321 1 2358999999999999766531100 0111 00112232 239999999
Q ss_pred cccccCC--HHHHHHHHHhhccCCcEEEEEecC
Q 022305 207 SVDYLTK--PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 207 ~l~~~~d--~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+|..+++ ...+++.+.+.+.+ .+||..+.
T Consensus 111 ~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpG 141 (274)
T PF09243_consen 111 VLNELPSAARAELVRSLWNKTAP--VLVLVEPG 141 (274)
T ss_pred hhhcCCchHHHHHHHHHHHhccC--cEEEEcCC
Confidence 9999976 34566667666665 55554443
No 209
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.23 E-value=0.0018 Score=56.88 Aligned_cols=144 Identities=19% Similarity=0.209 Sum_probs=84.2
Q ss_pred cCCceeeccCcCCc--cccCCCC-CCCeEEEEeCCHHH----HHhcCCC--CcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGY-KQDRIVGMGMNEEE----LKRNPVL--TEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~-~~~~v~gvD~S~~m----l~~a~~~--~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
...+||-+|..+|+ +|+.... +.+.|++|++|+.. ++.|+++ +--+..|+...+....--+.+|+|++--+
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DVa 152 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQDVA 152 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE-S
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEecCC
Confidence 44689999999997 6665433 36899999999955 4555554 44567887322222222357999998743
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHH--HhCCCCCCeeeecCCCCCCC
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFH--YAGGYEPPQAVDISPNPGRS 285 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~aGF~~v~~~~~~~~~~~~ 285 (299)
+-++..-++.++...||+||.+++.+..++ .....+++ ..+..... ++.||++.+...+.|= .
T Consensus 153 --Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~s--------iD~t~~p~--~vf~~e~~~L~~~~~~~~e~i~LePy--~- 217 (229)
T PF01269_consen 153 --QPDQARIAALNARHFLKPGGHLIISIKARS--------IDSTADPE--EVFAEEVKKLKEEGFKPLEQITLEPY--E- 217 (229)
T ss_dssp --STTHHHHHHHHHHHHEEEEEEEEEEEEHHH--------H-SSSSHH--HHHHHHHHHHHCTTCEEEEEEE-TTT--S-
T ss_pred --ChHHHHHHHHHHHhhccCCcEEEEEEecCc--------ccCcCCHH--HHHHHHHHHHHHcCCChheEeccCCC--C-
Confidence 334455677888899999999998764221 11111111 12222222 5578999998887642 2
Q ss_pred CCeEEEEEEe
Q 022305 286 DPMYVVYSRK 295 (299)
Q Consensus 286 ~p~~~v~arK 295 (299)
.-..+|+++.
T Consensus 218 ~dH~~vv~~y 227 (229)
T PF01269_consen 218 RDHAMVVGRY 227 (229)
T ss_dssp TTEEEEEEEE
T ss_pred CCcEEEEEEe
Confidence 2345555543
No 210
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.22 E-value=0.00052 Score=66.33 Aligned_cols=93 Identities=22% Similarity=0.271 Sum_probs=69.6
Q ss_pred ceeeccCcCCcccc-CCCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCCCCCCCCeeEEEeccccccc
Q 022305 140 EVFPPSNTPGVSHF-PPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 211 (299)
Q Consensus 140 ~vLDiGcG~G~~~~-~~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~ 211 (299)
++|-+|||.-..+. ........|+.+|+|+..++.... ...+...|+ ..+.|++++||+|+--.+++++
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~---~~l~fedESFdiVIdkGtlDal 127 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDM---DQLVFEDESFDIVIDKGTLDAL 127 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecc---hhccCCCcceeEEEecCccccc
Confidence 89999998543222 222234689999999987764322 277889999 8999999999999999999887
Q ss_pred C-C---------HHHHHHHHHhhccCCcEE-EEEe
Q 022305 212 T-K---------PIEVFKEMCQVLKPGGLA-IVSF 235 (299)
Q Consensus 212 ~-d---------~~~~l~ei~rvLkpGG~l-ii~~ 235 (299)
- | ....+.++.|+|+|||.+ .++.
T Consensus 128 ~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 128 FEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 2 1 235678999999999954 4554
No 211
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.22 E-value=0.00022 Score=67.49 Aligned_cols=90 Identities=7% Similarity=0.020 Sum_probs=58.0
Q ss_pred CceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCC-C-------C---C----
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKL-P-------F---E---- 195 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~l-p-------f---~---- 195 (299)
.++||++||+|+..+.......+|+|+|+|++|++.++++ ++++.+|+ .++ + + .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~---~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSA---EEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCH---HHHHHHHhhcccccccccccc
Confidence 4799999999985555544446899999999999977653 56888887 332 1 1 0
Q ss_pred -CCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 196 -DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 196 -~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
...||+|+.-== .-.-..++++.+. +|++.++++..
T Consensus 276 ~~~~~d~v~lDPP--R~G~~~~~l~~l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 276 KSYNCSTIFVDPP--RAGLDPDTCKLVQ---AYERILYISCN 312 (353)
T ss_pred ccCCCCEEEECCC--CCCCcHHHHHHHH---cCCcEEEEEcC
Confidence 123788775310 1111234445443 47889999854
No 212
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.21 E-value=0.00032 Score=72.14 Aligned_cols=73 Identities=12% Similarity=0.121 Sum_probs=49.0
Q ss_pred eEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCC--CCCeeEEEeccccccc------CCHHHHHHH---
Q 022305 161 RIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFE--DNSFDVITNVVSVDYL------TKPIEVFKE--- 220 (299)
Q Consensus 161 ~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~--~~~FD~Vis~~~l~~~------~d~~~~l~e--- 220 (299)
+++|+|+++.|++.|+.+ +++.++|+ .+++.+ .++||+|+++= .|. .+.....++
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~---~~~~~~~~~~~~d~IvtNP--PYg~r~~~~~~l~~lY~~lg~ 332 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDV---ADLKNPLPKGPTGLVISNP--PYGERLGEEPALIALYSQLGR 332 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCCh---hhcccccccCCCCEEEECC--CCcCccCchHHHHHHHHHHHH
Confidence 699999999999987663 57888898 666543 45899999982 221 123334344
Q ss_pred HHhhccCCcEEEEEecCc
Q 022305 221 MCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 221 i~rvLkpGG~lii~~~~~ 238 (299)
..+...+|+.+++-.++.
T Consensus 333 ~lk~~~~g~~~~llt~~~ 350 (702)
T PRK11783 333 RLKQQFGGWNAALFSSSP 350 (702)
T ss_pred HHHHhCCCCeEEEEeCCH
Confidence 344444888777765553
No 213
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.20 E-value=0.00019 Score=66.24 Aligned_cols=92 Identities=14% Similarity=0.178 Sum_probs=60.4
Q ss_pred CceeeccCcCCcc-ccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 139 SEVFPPSNTPGVS-HFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 139 ~~vLDiGcG~G~~-~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
+-|||+|||+|.. .++..-...+|++|+-|+ |.+.|++ ++.++.+.+ +++.++ ++.|+||+--.-
T Consensus 179 kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKi---EdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 179 KIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKI---EDIELP-EKVDVIISEPMG 253 (517)
T ss_pred cEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCcc---ccccCc-hhccEEEeccch
Confidence 3589999999984 444443446899999875 6666554 267777888 777775 459999975321
Q ss_pred ccc--CCHHHHHHHHHhhccCCcEEEEEe
Q 022305 209 DYL--TKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 209 ~~~--~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
.-+ +...+..--..|.|||.|.++=++
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 111 222233334569999999876543
No 214
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.19 E-value=0.00018 Score=62.64 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=58.3
Q ss_pred cCCceeeccCcCCccccCCCC--CCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGVSHFPPGY--KQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~--~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
....|+|+-||-|...++.+. +...|+++|++|..++..++ .+..+.+|. ..+.. .+.||.|++.
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~---~~~~~-~~~~drvim~ 176 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDA---REFLP-EGKFDRVIMN 176 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-G---GG----TT-EEEEEE-
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCH---HHhcC-ccccCEEEEC
Confidence 456899999999976665544 56789999999999875433 267788998 55544 7889999987
Q ss_pred ccccccCCHHHHHHHHHhhccCCcEEE
Q 022305 206 VSVDYLTKPIEVFKEMCQVLKPGGLAI 232 (299)
Q Consensus 206 ~~l~~~~d~~~~l~ei~rvLkpGG~li 232 (299)
.- ..-..+|..+.+++|+||.+-
T Consensus 177 lp----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 177 LP----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -T----SSGGGGHHHHHHHEEEEEEEE
T ss_pred Ch----HHHHHHHHHHHHHhcCCcEEE
Confidence 42 233467788999999999764
No 215
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.19 E-value=0.0022 Score=56.25 Aligned_cols=136 Identities=13% Similarity=0.101 Sum_probs=83.7
Q ss_pred CCceeeccCcCCccccC--CCCCCCeEEEEeCCHHHHH---hcC-----CCCcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 138 YSEVFPPSNTPGVSHFP--PGYKQDRIVGMGMNEEELK---RNP-----VLTEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~--~~~~~~~v~gvD~S~~ml~---~a~-----~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
..+++|+|+|.|.--++ ...+..+++-+|....=+. .+. .+++++++.+ +++.-....||+|+|..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~Ra---E~~~~~~~~~D~vtsRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRA---EEFGQEKKQYDVVTSRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhH---hhcccccccCcEEEeehc
Confidence 47999999999974443 4557788999998865433 222 2478888888 666532222999999864
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCCCCCCC
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDP 287 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~~~~p 287 (299)
.+....+.-+...+|+||.+++-.. ... .+...-..... ...||....+.....+. ...+
T Consensus 145 ----a~L~~l~e~~~pllk~~g~~~~~k~------------~~~--~~e~~e~~~a~-~~~~~~~~~~~~~~~p~-~~~~ 204 (215)
T COG0357 145 ----ASLNVLLELCLPLLKVGGGFLAYKG------------LAG--KDELPEAEKAI-LPLGGQVEKVFSLTVPE-LDGE 204 (215)
T ss_pred ----cchHHHHHHHHHhcccCCcchhhhH------------Hhh--hhhHHHHHHHH-HhhcCcEEEEEEeecCC-CCCc
Confidence 4667777888999999997754100 000 01111111111 33667777776665443 3446
Q ss_pred eEEEEEEec
Q 022305 288 MYVVYSRKA 296 (299)
Q Consensus 288 ~~~v~arK~ 296 (299)
..+++.+|.
T Consensus 205 r~l~ii~~~ 213 (215)
T COG0357 205 RHLVIIRKR 213 (215)
T ss_pred eEEEEEecc
Confidence 667776664
No 216
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.16 E-value=0.00039 Score=69.16 Aligned_cols=90 Identities=13% Similarity=0.097 Sum_probs=49.8
Q ss_pred ccCcchhhccccHHHHHHhhh----cCCceeeccCcCCccccCC--------C--CCCCeEEEEeCCHHHHHhcCCC---
Q 022305 116 FYETPRFVTHIDDPAIAALTK----YYSEVFPPSNTPGVSHFPP--------G--YKQDRIVGMGMNEEELKRNPVL--- 178 (299)
Q Consensus 116 ~y~~~~~~~~l~~~~~~~l~~----~~~~vLDiGcG~G~~~~~~--------~--~~~~~v~gvD~S~~ml~~a~~~--- 178 (299)
||..+.++..+.+.+...... ...+|||++||+|...... . ....+++|+|+++..++.++.+
T Consensus 6 fyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~ 85 (524)
T TIGR02987 6 FFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGE 85 (524)
T ss_pred cCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhh
Confidence 566666655554433222111 2358999999999722211 0 0135799999999999876543
Q ss_pred -----CcEEEeccCCCCC--CCCCCCCeeEEEec
Q 022305 179 -----TEYVVQDLNLNPK--LPFEDNSFDVITNV 205 (299)
Q Consensus 179 -----~~~~~~D~~~~~~--lpf~~~~FD~Vis~ 205 (299)
.+....|...... ..-..+.||+|+++
T Consensus 86 ~~~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgN 119 (524)
T TIGR02987 86 FALLEINVINFNSLSYVLLNIESYLDLFDIVITN 119 (524)
T ss_pred cCCCCceeeecccccccccccccccCcccEEEeC
Confidence 2233333210000 01112579999977
No 217
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.09 E-value=0.00013 Score=62.13 Aligned_cols=95 Identities=15% Similarity=0.240 Sum_probs=50.8
Q ss_pred CceeeccCcCCc--cccCCC-CCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCC---CCC----CCCCCCeeEEEecccc
Q 022305 139 SEVFPPSNTPGV--SHFPPG-YKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLN---PKL----PFEDNSFDVITNVVSV 208 (299)
Q Consensus 139 ~~vLDiGcG~G~--~~~~~~-~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~---~~l----pf~~~~FD~Vis~~~l 208 (299)
..+||+||++|. ..+... .+..+|+|+|+.+.- -.+.+.++.+|+... ..+ +-..+.||+|+|-.+.
T Consensus 25 ~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~---~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~ 101 (181)
T PF01728_consen 25 FTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD---PLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSDMAP 101 (181)
T ss_dssp EEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG---S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE----
T ss_pred cEEEEcCCcccceeeeeeecccccceEEEEeccccc---cccceeeeecccchhhHHHhhhhhccccccCcceecccccc
Confidence 579999999996 222222 235899999999861 112233333333110 111 1122689999987633
Q ss_pred cccC----C-------HHHHHHHHHhhccCCcEEEEEec
Q 022305 209 DYLT----K-------PIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 209 ~~~~----d-------~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.... | ....+.-+...|||||.+++-+-
T Consensus 102 ~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 102 NVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp ---SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 3222 1 12344555678999998888654
No 218
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.06 E-value=0.00044 Score=65.78 Aligned_cols=90 Identities=14% Similarity=0.167 Sum_probs=65.3
Q ss_pred CceeeccCcCCccccCCCC---CCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 139 SEVFPPSNTPGVSHFPPGY---KQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~---~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
.++||+-||+|...+.... ...+|+++|+|+..++..+++ ++++..|++ .-+....+.||+|..--
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~--~~l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAA--NVLRYRNRKFHVIDIDP- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHH--HHHHHhCCCCCEEEeCC-
Confidence 3799999999985544332 226899999999999866543 456777772 11222246799998743
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
...+..++..+.+.+++||++.++
T Consensus 123 ---fGs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 123 ---FGTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred ---CCCcHHHHHHHHHhcccCCEEEEE
Confidence 246678999999999999999997
No 219
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.01 E-value=0.00059 Score=63.10 Aligned_cols=97 Identities=22% Similarity=0.301 Sum_probs=59.9
Q ss_pred CCceeeccCcCCccccCCC---------CCCCeEEEEeCCHHHHHhcCCC----------CcEEEeccCCCCCCC-CC-C
Q 022305 138 YSEVFPPSNTPGVSHFPPG---------YKQDRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKLP-FE-D 196 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~---------~~~~~v~gvD~S~~ml~~a~~~----------~~~~~~D~~~~~~lp-f~-~ 196 (299)
..+|+|+.||+|....... ....+++|+|+++.+...++-+ .....+|. -..+ +. .
T Consensus 47 ~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~---l~~~~~~~~ 123 (311)
T PF02384_consen 47 GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDS---LENDKFIKN 123 (311)
T ss_dssp TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-T---TTSHSCTST
T ss_pred cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccc---ccccccccc
Confidence 3479999999997332211 2467899999999998765421 34666675 2222 22 5
Q ss_pred CCeeEEEec--cccc-c----c-CC-------------HHHHHHHHHhhccCCcEEEEEecC
Q 022305 197 NSFDVITNV--VSVD-Y----L-TK-------------PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 197 ~~FD~Vis~--~~l~-~----~-~d-------------~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+.||+|+++ +... + . .+ ...++..+.+.||+||.+.+.+|+
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 789999986 2222 1 0 00 124788899999999998887774
No 220
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.99 E-value=0.0011 Score=57.82 Aligned_cols=104 Identities=16% Similarity=0.125 Sum_probs=72.0
Q ss_pred HHHHHHhhhcCCceeeccCcCCc-cccCCCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCC-CCCCCC
Q 022305 128 DPAIAALTKYYSEVFPPSNTPGV-SHFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKL-PFEDNS 198 (299)
Q Consensus 128 ~~~~~~l~~~~~~vLDiGcG~G~-~~~~~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~l-pf~~~~ 198 (299)
....+.+.....+||.+|-|-|. ..+....+..+=+-|+.+++.+++-+. ++....+--. .-+ .++|+.
T Consensus 92 ha~A~ai~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~We--Dvl~~L~d~~ 169 (271)
T KOG1709|consen 92 HALAEAISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWE--DVLNTLPDKH 169 (271)
T ss_pred HHHHHHHhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchH--hhhccccccC
Confidence 33344444556899999999886 444444455666778999999887654 2333333220 112 256889
Q ss_pred eeEEEecccccccCCHHHHHHHHHhhccCCcEEEE
Q 022305 199 FDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 199 FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
||-|+---.-++.+|...+.+.+.|+|||+|.+-+
T Consensus 170 FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 170 FDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred cceeEeechhhHHHHHHHHHHHHhhhcCCCceEEE
Confidence 99998765557888999999999999999997643
No 221
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.95 E-value=0.00092 Score=58.75 Aligned_cols=91 Identities=13% Similarity=0.201 Sum_probs=65.8
Q ss_pred CceeeccCcCCccccC--CCC-CCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCC-----CCCCCeeE
Q 022305 139 SEVFPPSNTPGVSHFP--PGY-KQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLP-----FEDNSFDV 201 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~--~~~-~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lp-----f~~~~FD~ 201 (299)
++.||+|.=+|.+.+. ... .+++|+++|++++..+.+.+ ++++++++.. +.|+ .+.++||.
T Consensus 75 k~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~--esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 75 KRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPAL--ESLDELLADGESGTFDF 152 (237)
T ss_pred ceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchh--hhHHHHHhcCCCCceeE
Confidence 6899999767764443 222 36899999999988876543 4788888763 2332 35789999
Q ss_pred EEecccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 202 ITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 202 Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
++.-. +-.+-...+.++.++||+||.++++
T Consensus 153 aFvDa---dK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 153 AFVDA---DKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEEcc---chHHHHHHHHHHHhhcccccEEEEe
Confidence 98542 2234457889999999999999886
No 222
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.83 E-value=0.00019 Score=65.74 Aligned_cols=96 Identities=18% Similarity=0.217 Sum_probs=62.6
Q ss_pred CCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCCC----------CcEEEeccCCCCC-CC--CCCCCeeEEE
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPK-LP--FEDNSFDVIT 203 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~~----------~~~~~~D~~~~~~-lp--f~~~~FD~Vi 203 (299)
..+|||+=|=+|...+.....+ .+|++||.|..+++.++++ ++++..|+ .+ +. -..++||+||
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dv---f~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDV---FKFLKRLKKGGRFDLII 200 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-H---HHHHHHHHHTT-EEEEE
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCH---HHHHHHHhcCCCCCEEE
Confidence 4689999887776444333345 4799999999999977653 67888887 22 21 1346899999
Q ss_pred ec------ccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 204 NV------VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 204 s~------~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+- ....-..+..+.+..+.++|+|||.+++...
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 42 1111123667889999999999998876543
No 223
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.76 E-value=0.0011 Score=62.53 Aligned_cols=72 Identities=14% Similarity=0.109 Sum_probs=50.1
Q ss_pred eEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEEecc--cccccCC---H----HHHHHHHH
Q 022305 161 RIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVV--SVDYLTK---P----IEVFKEMC 222 (299)
Q Consensus 161 ~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vis~~--~l~~~~d---~----~~~l~ei~ 222 (299)
.++|+|+++.|++.|+.+ ++|.++|+ ..++-+-+.+|+|||+- ..- +.+ . ..+.+.++
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~---~~l~~~~~~~gvvI~NPPYGeR-lg~~~~v~~LY~~fg~~lk 331 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADA---TDLKEPLEEYGVVISNPPYGER-LGSEALVAKLYREFGRTLK 331 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcch---hhCCCCCCcCCEEEeCCCcchh-cCChhhHHHHHHHHHHHHH
Confidence 377999999999988764 88999999 66654437899999982 111 112 1 23445666
Q ss_pred hhccCCcEEEEEec
Q 022305 223 QVLKPGGLAIVSFS 236 (299)
Q Consensus 223 rvLkpGG~lii~~~ 236 (299)
+.++--+.++|+..
T Consensus 332 ~~~~~ws~~v~tt~ 345 (381)
T COG0116 332 RLLAGWSRYVFTTS 345 (381)
T ss_pred HHhcCCceEEEEcc
Confidence 77776677777644
No 224
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.67 E-value=0.0012 Score=60.15 Aligned_cols=137 Identities=17% Similarity=0.184 Sum_probs=69.0
Q ss_pred CceeeccCcCC--ccccC--CCCCCCeEEEEeCCHHHHHhcCC----------CCcEEEeccCCCCCCCCCCCCeeEEEe
Q 022305 139 SEVFPPSNTPG--VSHFP--PGYKQDRIVGMGMNEEELKRNPV----------LTEYVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 139 ~~vLDiGcG~G--~~~~~--~~~~~~~v~gvD~S~~ml~~a~~----------~~~~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
.+|+=+|||+= +.... ....+..++++|++++..+.+++ +++|+.+|. ...+..-..||+|+.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~---~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADV---LDVTYDLKEYDVVFL 198 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-G---GGG-GG----SEEEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecch---hccccccccCCEEEE
Confidence 48999999833 21221 12246789999999999987654 378888898 555555578999886
Q ss_pred ccccc-ccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCCC
Q 022305 205 VVSVD-YLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPG 283 (299)
Q Consensus 205 ~~~l~-~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~ 283 (299)
..... --.+..++|.++.+.++||..+++-..+.. .......-++. .-.||+...+..-.
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~Gl-----R~~LYp~vd~~----------~l~gf~~~~~~hP~---- 259 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGL-----RSFLYPVVDPE----------DLRGFEVLAVVHPT---- 259 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GG-----GGGSS----TG----------GGTTEEEEEEE-------
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEEEecchhh-----HHHcCCCCChH----------HCCCeEEEEEECCC----
Confidence 54333 334788999999999999999988643211 00111101110 11389876664433
Q ss_pred CCCCeEEEEEEecC
Q 022305 284 RSDPMYVVYSRKAS 297 (299)
Q Consensus 284 ~~~p~~~v~arK~~ 297 (299)
..--.-+|++||..
T Consensus 260 ~~ViNSvv~~rk~~ 273 (276)
T PF03059_consen 260 DEVINSVVFARKKQ 273 (276)
T ss_dssp TT---EEEEE----
T ss_pred CCceeEEEEEEecc
Confidence 22345789999975
No 225
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.58 E-value=0.011 Score=51.41 Aligned_cols=96 Identities=18% Similarity=0.131 Sum_probs=58.8
Q ss_pred cCCceeeccCcCCc-cccCC--CCCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCC-----CCCCCCeeEEEecccc
Q 022305 137 YYSEVFPPSNTPGV-SHFPP--GYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKL-----PFEDNSFDVITNVVSV 208 (299)
Q Consensus 137 ~~~~vLDiGcG~G~-~~~~~--~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~l-----pf~~~~FD~Vis~~~l 208 (299)
....|+|+|+-+|. +.++. ..+...|+|+|+-|--.- ..+.++++|+.....+ .+....+|+|+|-..-
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~---~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap 121 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI---PGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAP 121 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC---CCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCC
Confidence 34689999998885 11111 113356999999873221 1288999998432221 1344557999964322
Q ss_pred --------cccC--CH-HHHHHHHHhhccCCcEEEEEe
Q 022305 209 --------DYLT--KP-IEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 209 --------~~~~--d~-~~~l~ei~rvLkpGG~lii~~ 235 (299)
+|.. .+ ..++.-...+|+|||.+++-+
T Consensus 122 ~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 122 NTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred CcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 3322 12 245556677999999998864
No 226
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.53 E-value=0.00035 Score=59.98 Aligned_cols=97 Identities=18% Similarity=0.145 Sum_probs=62.8
Q ss_pred CCceeeccCcCCcccc-CCCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCC---CCCCCeeEEEe
Q 022305 138 YSEVFPPSNTPGVSHF-PPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLP---FEDNSFDVITN 204 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~-~~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lp---f~~~~FD~Vis 204 (299)
..++||+-||+|.--+ +......+|+.||.|+..++..+++ ++.+..|.. ..++ -....||+|+.
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~--~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAF--KFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHH--HHHHHHHHCTS-EEEEEE
T ss_pred CCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHH--HHHHhhcccCCCceEEEE
Confidence 4689999999997333 3343446999999999988765543 456667741 2222 24688999997
Q ss_pred cccccccCC--HHHHHHHHH--hhccCCcEEEEEecCc
Q 022305 205 VVSVDYLTK--PIEVFKEMC--QVLKPGGLAIVSFSNR 238 (299)
Q Consensus 205 ~~~l~~~~d--~~~~l~ei~--rvLkpGG~lii~~~~~ 238 (299)
- -.|-.+ ..++++.+. .+|+++|.++++....
T Consensus 121 D--PPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 D--PPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp ----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred C--CCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 6 223222 367777776 8999999999997654
No 227
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.44 E-value=0.011 Score=57.66 Aligned_cols=93 Identities=17% Similarity=0.172 Sum_probs=59.7
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHH----HHHh--cCCCCcEEEeccCCCCCCCCCCCCeeEEEecccccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEE----ELKR--NPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 210 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~----ml~~--a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~ 210 (299)
.+.+|+|...|.|...-++. ...|.-+-.-+. .|.. .+..+- +..|-. |.++.-+.+||+|.+..++..
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~--~~~VWVMNVVP~~~~ntL~vIydRGLIG-~yhDWC--E~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALI--DDPVWVMNVVPVSGPNTLPVIYDRGLIG-VYHDWC--EAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred ceeeeeeecccccHHHHHhc--cCCceEEEecccCCCCcchhhhhcccch-hccchh--hccCCCCcchhheehhhhhhh
Confidence 45689999998774332222 222333322222 1211 111121 223433 667777899999999988887
Q ss_pred cC---CHHHHHHHHHhhccCCcEEEEE
Q 022305 211 LT---KPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 211 ~~---d~~~~l~ei~rvLkpGG~lii~ 234 (299)
.. +...+|-||-|+|+|||.+||.
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEe
Confidence 64 5788999999999999999996
No 228
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.42 E-value=0.0022 Score=56.02 Aligned_cols=101 Identities=15% Similarity=0.243 Sum_probs=64.7
Q ss_pred HHHhhccC----CCcccccCcc-hhhccccHHHHHHhhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC
Q 022305 103 EDFQRFDE----SPDSLFYETP-RFVTHIDDPAIAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV 177 (299)
Q Consensus 103 ~~~~~~d~----~~~~~~y~~~-~~~~~l~~~~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~ 177 (299)
..|.++|. ..+.||.-.| ....|++.....-. ....|+|.-||.|.........+..|++||++|.-+..|++
T Consensus 57 rlfsrfd~gi~md~e~wfsvTpe~ia~~iA~~v~~~~--~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~Akh 134 (263)
T KOG2730|consen 57 RLFSRFDSGIYMDREGWFSVTPEKIAEHIANRVVACM--NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARH 134 (263)
T ss_pred HHHHhhccceeecccceEEeccHHHHHHHHHHHHHhc--CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhc
Confidence 34555554 2233443333 44455544433332 34679999888777777777778999999999999988877
Q ss_pred C---------CcEEEeccCC-CCCCCCCCCCeeEEEec
Q 022305 178 L---------TEYVVQDLNL-NPKLPFEDNSFDVITNV 205 (299)
Q Consensus 178 ~---------~~~~~~D~~~-~~~lpf~~~~FD~Vis~ 205 (299)
+ ++|+++|.-+ ...+.+....+|+|+.+
T Consensus 135 NaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 135 NAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred cceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 4 7899999721 02234555557777754
No 229
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.34 E-value=0.0014 Score=62.06 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=42.9
Q ss_pred cccHHHHHHhhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEecc
Q 022305 125 HIDDPAIAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDL 186 (299)
Q Consensus 125 ~l~~~~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~ 186 (299)
.+.+.+++.+.....++||+-||.|+..++.+....+|+|||+++++++.|++ +++|+.++.
T Consensus 184 ~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 184 KLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 33344455554333479999999999888777777899999999999998765 367887665
No 230
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.29 E-value=0.008 Score=56.34 Aligned_cols=91 Identities=16% Similarity=0.103 Sum_probs=70.5
Q ss_pred cCCceeeccCcCCccccCCCCCCCe-EEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDR-IVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~-v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
....|+|.=+|-|-..++.+..+.. |+++|+||..++..+++ ++.+.+|. ......-+.||-|++++
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~---rev~~~~~~aDrIim~~ 264 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDA---REVAPELGVADRIIMGL 264 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccH---HHhhhccccCCEEEeCC
Confidence 3578999999999877776655544 99999999998865442 67889998 66665558899999885
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
- .+-.+++....+.+|+||.+..-
T Consensus 265 p----~~a~~fl~~A~~~~k~~g~iHyy 288 (341)
T COG2520 265 P----KSAHEFLPLALELLKDGGIIHYY 288 (341)
T ss_pred C----CcchhhHHHHHHHhhcCcEEEEE
Confidence 3 35567888888999999977663
No 231
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=96.21 E-value=0.0034 Score=52.31 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=50.0
Q ss_pred CCCeeEEEecccccccC-----C---H---HHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHH
Q 022305 196 DNSFDVITNVVSVDYLT-----K---P---IEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYF 264 (299)
Q Consensus 196 ~~~FD~Vis~~~l~~~~-----d---~---~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (299)
.++||.+.|.++++|+. | | .+.+.++.++|||||.+++++|-... .-.|..+..+.+.+ ..
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d----~i~fNahRiYg~~r----L~ 132 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD----AIQFNAHRIYGPIR----LA 132 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc----ceEEecceeecHhH----HH
Confidence 57899999999999982 3 2 47888999999999999999875320 01122222222222 22
Q ss_pred HHhCCCCCCeeeecC
Q 022305 265 HYAGGYEPPQAVDIS 279 (299)
Q Consensus 265 ~~~aGF~~v~~~~~~ 279 (299)
..-.||+.+..+.-.
T Consensus 133 mm~~gfe~i~tfs~~ 147 (177)
T PF03269_consen 133 MMFYGFEWIDTFSGD 147 (177)
T ss_pred HHhCCcEEEeeeccC
Confidence 244788888776653
No 232
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.20 E-value=0.0028 Score=58.42 Aligned_cols=75 Identities=13% Similarity=0.109 Sum_probs=52.2
Q ss_pred HHHHHHhh-hcCCceeeccCcCCc--cccCCCCC-CCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCC--CC
Q 022305 128 DPAIAALT-KYYSEVFPPSNTPGV--SHFPPGYK-QDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLP--FE 195 (299)
Q Consensus 128 ~~~~~~l~-~~~~~vLDiGcG~G~--~~~~~~~~-~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lp--f~ 195 (299)
+++++.+. +....++|.+||.|. ..++...+ .++|+|+|.++.|++.+++ +++++++|. .++. .+
T Consensus 9 ~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f---~~l~~~l~ 85 (296)
T PRK00050 9 DEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNF---SNLKEVLA 85 (296)
T ss_pred HHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCH---HHHHHHHH
Confidence 45566664 444689999999886 33344443 5899999999999988764 367788887 4442 12
Q ss_pred CC--CeeEEEec
Q 022305 196 DN--SFDVITNV 205 (299)
Q Consensus 196 ~~--~FD~Vis~ 205 (299)
++ ++|.|+..
T Consensus 86 ~~~~~vDgIl~D 97 (296)
T PRK00050 86 EGLGKVDGILLD 97 (296)
T ss_pred cCCCccCEEEEC
Confidence 22 79999965
No 233
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.19 E-value=0.0079 Score=56.37 Aligned_cols=99 Identities=14% Similarity=0.149 Sum_probs=67.1
Q ss_pred hcCCceeeccCcCCc-cccCCCCC-CCeEEEEeCCHHHHHhcCCC---------------CcEEEeccCCCCCC-CCCCC
Q 022305 136 KYYSEVFPPSNTPGV-SHFPPGYK-QDRIVGMGMNEEELKRNPVL---------------TEYVVQDLNLNPKL-PFEDN 197 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~-~~~~~~~~-~~~v~gvD~S~~ml~~a~~~---------------~~~~~~D~~~~~~l-pf~~~ 197 (299)
+...++|-+|.|.|. ..-..++| ..+++-+|+.|+|++.+++. ++.+..|. .+. .-..+
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDA---f~wlr~a~~ 364 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDA---FQWLRTAAD 364 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccH---HHHHHhhcc
Confidence 345789999999886 23344556 47999999999999988742 55666665 332 23456
Q ss_pred CeeEEEecccccccC-----CHHHHHHHHHhhccCCcEEEEEecC
Q 022305 198 SFDVITNVVSVDYLT-----KPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 198 ~FD~Vis~~~l~~~~-----d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
.||.||.-.-=..-+ --.++..-+.|.|+++|.+++.-..
T Consensus 365 ~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags 409 (508)
T COG4262 365 MFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS 409 (508)
T ss_pred cccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCC
Confidence 899998542100000 1136777889999999999997544
No 234
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.11 E-value=0.0093 Score=48.81 Aligned_cols=69 Identities=17% Similarity=0.452 Sum_probs=45.8
Q ss_pred eEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCC-C-CCCCeeEEEecccccccC--C------H---HHHH
Q 022305 161 RIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLP-F-EDNSFDVITNVVSVDYLT--K------P---IEVF 218 (299)
Q Consensus 161 ~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lp-f-~~~~FD~Vis~~~l~~~~--d------~---~~~l 218 (299)
+|+|.||-+++++..++ +++++..+= +++. + +++.+|+|+-+. -|+| | + ..++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sH---e~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al 75 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSH---ENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKAL 75 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-G---GGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCH---HHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHH
Confidence 58999999999987654 266666654 4453 2 335899998774 4554 2 2 4788
Q ss_pred HHHHhhccCCcEEEEE
Q 022305 219 KEMCQVLKPGGLAIVS 234 (299)
Q Consensus 219 ~ei~rvLkpGG~lii~ 234 (299)
+.+.++|+|||.+++.
T Consensus 76 ~~al~lL~~gG~i~iv 91 (140)
T PF06962_consen 76 EAALELLKPGGIITIV 91 (140)
T ss_dssp HHHHHHEEEEEEEEEE
T ss_pred HHHHHhhccCCEEEEE
Confidence 8999999999987765
No 235
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.03 E-value=0.006 Score=59.17 Aligned_cols=109 Identities=18% Similarity=0.197 Sum_probs=73.5
Q ss_pred hhccccHHHHHHhhh-cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCC
Q 022305 122 FVTHIDDPAIAALTK-YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKL 192 (299)
Q Consensus 122 ~~~~l~~~~~~~l~~-~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~l 192 (299)
....+...+.+.+.. ...++||+=||.|+..+..+....+|+|+|+++++++.|+++ ++|+.+|. +++
T Consensus 277 ~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~a---e~~ 353 (432)
T COG2265 277 VAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDA---EEF 353 (432)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCH---HHH
Confidence 333444445555543 335799999999998888888889999999999999977653 67888888 555
Q ss_pred CC---CCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 193 PF---EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 193 pf---~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.. ....+|+|+.-= .--.-...+++.+. -++|-..++++..
T Consensus 354 ~~~~~~~~~~d~VvvDP--PR~G~~~~~lk~l~-~~~p~~IvYVSCN 397 (432)
T COG2265 354 TPAWWEGYKPDVVVVDP--PRAGADREVLKQLA-KLKPKRIVYVSCN 397 (432)
T ss_pred hhhccccCCCCEEEECC--CCCCCCHHHHHHHH-hcCCCcEEEEeCC
Confidence 43 235789888530 00000124555555 4578888888854
No 236
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.92 E-value=0.0024 Score=53.29 Aligned_cols=99 Identities=14% Similarity=0.154 Sum_probs=66.2
Q ss_pred CceeeccCc-CCcc-c-cCCCCCCCeEEEEeCCHHHHHhcCCC---------Cc--EEEeccCCCCCCCCCCCCeeEEEe
Q 022305 139 SEVFPPSNT-PGVS-H-FPPGYKQDRIVGMGMNEEELKRNPVL---------TE--YVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 139 ~~vLDiGcG-~G~~-~-~~~~~~~~~v~gvD~S~~ml~~a~~~---------~~--~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
.+||++|.| +|.. . ++..-+...|.-.|-+++.++..++. .+ ....+... .+...+.++||.|+|
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~-aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWG-AQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhh-hHHHHhhCcccEEEe
Confidence 479999988 5542 2 23333567899999999998754431 11 11112110 122345679999999
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
..++-.-+.....++-|++.|+|.|..++.-|.+
T Consensus 110 ADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 110 ADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred ccchhHHHHHHHHHHHHHHHhCcccceeEecCcc
Confidence 9988766666788899999999999876655553
No 237
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=95.89 E-value=0.00086 Score=56.36 Aligned_cols=99 Identities=13% Similarity=0.210 Sum_probs=56.1
Q ss_pred ceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCC-C-CCCCC-eeEEEec--
Q 022305 140 EVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKL-P-FEDNS-FDVITNV-- 205 (299)
Q Consensus 140 ~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~l-p-f~~~~-FD~Vis~-- 205 (299)
.|+|+.||.|...+..+....+|++||+++..++.++. +++++++|. .++ + +..+. ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~---~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDF---FELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-H---HHHGGGB------SEEEE---
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCH---HHHHhhccccccccEEEECCC
Confidence 58999999987555555556799999999999987765 378999998 333 2 22222 8999954
Q ss_pred -----------ccc-cccC--CHHHHHHHHHhhccCCcEEEEEecCcchHHHH
Q 022305 206 -----------VSV-DYLT--KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKA 244 (299)
Q Consensus 206 -----------~~l-~~~~--d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~ 244 (299)
+-| .++. +..+.++...++-+ .+++-.|......+.
T Consensus 79 WGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t~---nv~l~LPRn~dl~ql 128 (163)
T PF09445_consen 79 WGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKITP---NVVLFLPRNSDLNQL 128 (163)
T ss_dssp BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-S----EEEEEETTB-HHHH
T ss_pred CCCccccccCccCHHHccCCCCHHHHHHHHHhhCC---CEEEEeCCCCCHHHH
Confidence 122 2222 34566666555543 455556655544444
No 238
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=95.88 E-value=0.0098 Score=50.91 Aligned_cols=90 Identities=14% Similarity=0.139 Sum_probs=67.3
Q ss_pred CceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCCCCeeEEEeccc--c
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVS--V 208 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~--l 208 (299)
+.+.|+|.|+|...+..+....+|++++.+|.-.+.|.++ ++.+++|+ ....| ..-|+|+|-.. .
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA---~~y~f--e~ADvvicEmlDTa 108 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDA---RDYDF--ENADVVICEMLDTA 108 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccc---ccccc--cccceeHHHHhhHH
Confidence 6789999999986665555578999999999988887775 56788888 66777 44799998532 2
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEE
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
--.+....+++.+...||-++.+|=
T Consensus 109 Li~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 109 LIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hhcccccHHHHHHHHHhhcCCcccc
Confidence 2223445678888888999998753
No 239
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.86 E-value=0.0076 Score=51.86 Aligned_cols=97 Identities=12% Similarity=0.104 Sum_probs=66.9
Q ss_pred CCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
.++|||+|+|+|.-.+.....+ ..|+..|+.+..++..+-+ +.+...|. +. .+..||+|+...++.
T Consensus 80 gkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~-----~g-~~~~~Dl~LagDlfy 153 (218)
T COG3897 80 GKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADL-----IG-SPPAFDLLLAGDLFY 153 (218)
T ss_pred cceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccc-----cC-CCcceeEEEeeceec
Confidence 3689999999998666555444 5788999998777644332 55566665 22 677899999998876
Q ss_pred ccCCHHHHHHHHHhhccCCc-EEEEEecCcchH
Q 022305 210 YLTKPIEVFKEMCQVLKPGG-LAIVSFSNRCFW 241 (299)
Q Consensus 210 ~~~d~~~~l~ei~rvLkpGG-~lii~~~~~~~~ 241 (299)
.-+.-.+.+. +.+.|+-.| .+++..|.+..+
T Consensus 154 ~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 154 NHTEADRLIP-WKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred CchHHHHHHH-HHHHHHhCCCEEEEeCCCCCCC
Confidence 6555667777 666666656 566666665433
No 240
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=95.83 E-value=0.0019 Score=56.47 Aligned_cols=95 Identities=18% Similarity=0.112 Sum_probs=52.7
Q ss_pred cCCceeeccCcCCccccC--CCCCCCeEEEEeCCHHHHHhcCC-----------------CCcEEEeccCCCCCCCCCC-
Q 022305 137 YYSEVFPPSNTPGVSHFP--PGYKQDRIVGMGMNEEELKRNPV-----------------LTEYVVQDLNLNPKLPFED- 196 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~--~~~~~~~v~gvD~S~~ml~~a~~-----------------~~~~~~~D~~~~~~lpf~~- 196 (299)
.-+..+|+|||.|...+. ....-.+.+||++.+...+.|.. .+++..+|+ .+.++.+
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf---l~~~~~~~ 118 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF---LDPDFVKD 118 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T---TTHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc---cccHhHhh
Confidence 346799999999963332 12223459999999987664432 145566665 3322111
Q ss_pred --CCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 197 --NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 197 --~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
..-|+|++++.. +-++....|.++..-||+|-.+| +..
T Consensus 119 ~~s~AdvVf~Nn~~-F~~~l~~~L~~~~~~lk~G~~II-s~~ 158 (205)
T PF08123_consen 119 IWSDADVVFVNNTC-FDPDLNLALAELLLELKPGARII-STK 158 (205)
T ss_dssp HGHC-SEEEE--TT-T-HHHHHHHHHHHTTS-TT-EEE-ESS
T ss_pred hhcCCCEEEEeccc-cCHHHHHHHHHHHhcCCCCCEEE-ECC
Confidence 235899998764 33466778888889999887765 443
No 241
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=95.83 E-value=0.0044 Score=55.88 Aligned_cols=65 Identities=12% Similarity=0.012 Sum_probs=49.2
Q ss_pred hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 136 KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
+..+.||++|.|+|..+......+.+|+++++.+.|+..-.+ +.+++++|. ...+ .-.||.+|++
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~---lK~d--~P~fd~cVsN 130 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDF---LKTD--LPRFDGCVSN 130 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccc---ccCC--Ccccceeecc
Confidence 455789999999997666555578999999999999974332 367888998 4433 3459999986
No 242
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=95.67 E-value=0.0063 Score=54.89 Aligned_cols=66 Identities=11% Similarity=0.003 Sum_probs=52.2
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCC-CeeEEEecc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDN-SFDVITNVV 206 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~-~FD~Vis~~ 206 (299)
.+.||+||+|.|..+........+|+++++.+.+++.-++ +++.+.+|+ ...++++. .++.|+++.
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~Da---Lk~d~~~l~~~~~vVaNl 103 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDA---LKFDFPSLAQPYKVVANL 103 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCch---hcCcchhhcCCCEEEEcC
Confidence 4789999999997666655567889999999999875443 477899999 77777654 688888873
No 243
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=95.34 E-value=0.0071 Score=55.54 Aligned_cols=92 Identities=17% Similarity=0.178 Sum_probs=60.6
Q ss_pred CceeeccCcCCccccCCCCCCCeEEEEeCCHHHHH-------hcCCC---------------------------------
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELK-------RNPVL--------------------------------- 178 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~-------~a~~~--------------------------------- 178 (299)
.+||-+|||.|...+.....+..+-|-++|--|+- ..+..
T Consensus 152 i~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~ 231 (369)
T KOG2798|consen 152 IRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPA 231 (369)
T ss_pred ceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccccc
Confidence 46999999988765555555667777788877753 11110
Q ss_pred --------CcEEEeccCCCCCCC--CCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEE
Q 022305 179 --------TEYVVQDLNLNPKLP--FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAI 232 (299)
Q Consensus 179 --------~~~~~~D~~~~~~lp--f~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~li 232 (299)
.+...+|+. +-.+ -..++||+|+.++-+.--.+..+++..|..+|||||+.|
T Consensus 232 ~~~~~~~~fsicaGDF~--evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 232 SSNGNTGSFSICAGDFL--EVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWI 293 (369)
T ss_pred ccCCCCCCcccccccee--EEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEE
Confidence 011223331 1011 122479999988777777889999999999999999765
No 244
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=95.30 E-value=0.015 Score=49.93 Aligned_cols=98 Identities=16% Similarity=0.070 Sum_probs=63.3
Q ss_pred CceeeccCcCCc-cccCCCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCC--CCeeEEEecc
Q 022305 139 SEVFPPSNTPGV-SHFPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFED--NSFDVITNVV 206 (299)
Q Consensus 139 ~~vLDiGcG~G~-~~~~~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~--~~FD~Vis~~ 206 (299)
.++||+=+|+|. +.-+.......++.||.+.......+++ .+.+..|.. .-++-.. ++||+|+.-=
T Consensus 45 ~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~--~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 45 ARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL--RALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH--HHHHhcCCCCcccEEEeCC
Confidence 589999999997 3334444457899999999998765543 556667762 1222222 2599999752
Q ss_pred ccc-ccCCHHHHHHH--HHhhccCCcEEEEEecCc
Q 022305 207 SVD-YLTKPIEVFKE--MCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 207 ~l~-~~~d~~~~l~e--i~rvLkpGG~lii~~~~~ 238 (299)
=.+ -+-+....+.. -..+|+|+|.++++....
T Consensus 123 Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 123 PYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred CCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 222 11222333333 567899999999987654
No 245
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=95.17 E-value=0.032 Score=52.23 Aligned_cols=90 Identities=17% Similarity=0.040 Sum_probs=60.9
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHH--hcCCCCcEEEeccCCCCCCCCCCCCeeEEEecccccccCCH
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELK--RNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP 214 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~--~a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~ 214 (299)
....+||+||++|.-.......+.+|++||..+ |-. ....+++....|. ....-+.+.+|.++|-.+ ..|
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~~~L~~~~~V~h~~~d~---fr~~p~~~~vDwvVcDmv----e~P 282 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MAQSLMDTGQVEHLRADG---FKFRPPRKNVDWLVCDMV----EKP 282 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cCHhhhCCCCEEEEeccC---cccCCCCCCCCEEEEecc----cCH
Confidence 346899999999864333333477999999665 322 2233477777776 333222678999998754 578
Q ss_pred HHHHHHHHhhccCCc--EEEEE
Q 022305 215 IEVFKEMCQVLKPGG--LAIVS 234 (299)
Q Consensus 215 ~~~l~ei~rvLkpGG--~lii~ 234 (299)
.++.+-|.+.|..|= .+|+.
T Consensus 283 ~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 283 ARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred HHHHHHHHHHHhcCcccEEEEE
Confidence 888888999987772 55654
No 246
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.04 E-value=0.0054 Score=47.22 Aligned_cols=90 Identities=14% Similarity=0.184 Sum_probs=40.5
Q ss_pred eeccCcCCccc--cCCCCCC---CeEEEEeCCHH---HHHhcC-----CCCcEEEeccCCCCCCC-CCCCCeeEEEeccc
Q 022305 142 FPPSNTPGVSH--FPPGYKQ---DRIVGMGMNEE---ELKRNP-----VLTEYVVQDLNLNPKLP-FEDNSFDVITNVVS 207 (299)
Q Consensus 142 LDiGcG~G~~~--~~~~~~~---~~v~gvD~S~~---ml~~a~-----~~~~~~~~D~~~~~~lp-f~~~~FD~Vis~~~ 207 (299)
|++|+..|.+. +....+. .+++++|..+. ..+..+ .+++++.++.. +.++ +..++||+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~--~~l~~~~~~~~dli~iDg- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSP--DFLPSLPDGPIDLIFIDG- 77 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-TH--HHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcH--HHHHHcCCCCEEEEEECC-
Confidence 57887666533 3333222 37999999993 333332 23777887762 2222 3357899998654
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
-|-.+.....++.+.+.|+|||.+++.
T Consensus 78 ~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 78 DHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 222345667889999999999999885
No 247
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.69 E-value=0.04 Score=51.55 Aligned_cols=104 Identities=11% Similarity=0.159 Sum_probs=61.4
Q ss_pred CceeeccCcCCccccCCC--CCC-CeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCC-CCCeeEEEecc
Q 022305 139 SEVFPPSNTPGVSHFPPG--YKQ-DRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFE-DNSFDVITNVV 206 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~--~~~-~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~-~~~FD~Vis~~ 206 (299)
.+|||+|.|+|++.++.. +|. ..++-++.|+..-+.... ...+...|+.. +.++++ ...|++|+..+
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~-dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTE-DRLSLPAADLYTLAIVLD 193 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccch-hccCCCccceeehhhhhh
Confidence 579999999998776542 233 356666777765443211 12233333311 223332 24577777766
Q ss_pred cccccCC---HHHHHHHHHhhccCCcEEEEEecC-cchHHH
Q 022305 207 SVDYLTK---PIEVFKEMCQVLKPGGLAIVSFSN-RCFWTK 243 (299)
Q Consensus 207 ~l~~~~d---~~~~l~ei~rvLkpGG~lii~~~~-~~~~~~ 243 (299)
-|-+... ....++.++.++.|||+++|..+. +..|..
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~ 234 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFER 234 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHH
Confidence 6555532 345789999999999988775443 444433
No 248
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=94.54 E-value=0.32 Score=44.10 Aligned_cols=94 Identities=19% Similarity=0.182 Sum_probs=68.2
Q ss_pred hhcCCceeeccCcCCc-ccc-C-CCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCC--CCCCee
Q 022305 135 TKYYSEVFPPSNTPGV-SHF-P-PGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPF--EDNSFD 200 (299)
Q Consensus 135 ~~~~~~vLDiGcG~G~-~~~-~-~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf--~~~~FD 200 (299)
.+....|++-|.|+|. ++. + ..-|.++++-.|+.+.-.++|.+ ++++.+-|+ ....| .+..+|
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDV---c~~GF~~ks~~aD 179 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDV---CGSGFLIKSLKAD 179 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeec---ccCCccccccccc
Confidence 3456789999999986 222 1 12256899999998877776654 378888998 44444 457788
Q ss_pred EEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 201 VITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 201 ~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.|+.- ++.|..++--++.+||.+|.-+++|.
T Consensus 180 aVFLD-----lPaPw~AiPha~~~lk~~g~r~csFS 210 (314)
T KOG2915|consen 180 AVFLD-----LPAPWEAIPHAAKILKDEGGRLCSFS 210 (314)
T ss_pred eEEEc-----CCChhhhhhhhHHHhhhcCceEEecc
Confidence 88754 57888888889999999986555554
No 249
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=94.35 E-value=0.014 Score=53.55 Aligned_cols=98 Identities=22% Similarity=0.278 Sum_probs=64.7
Q ss_pred hcCCceeeccCcCCc--cccCCCCC-CCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCC-C-CCCCCeeEE
Q 022305 136 KYYSEVFPPSNTPGV--SHFPPGYK-QDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKL-P-FEDNSFDVI 202 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~~~~-~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~l-p-f~~~~FD~V 202 (299)
.....|||.++++|. .+++.... .+.+++.|+++.=++..++ .+.....|. ..+ + .....||.|
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~---~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADA---RKLDPKKPESKFDRV 160 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHH---HHHHHHHHTTTEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecc---ccccccccccccchh
Confidence 345689999999996 44444433 5899999999987764433 244455666 333 1 233469999
Q ss_pred E----eccc--ccccCC----------------HHHHHHHHHhhc----cCCcEEEEEec
Q 022305 203 T----NVVS--VDYLTK----------------PIEVFKEMCQVL----KPGGLAIVSFS 236 (299)
Q Consensus 203 i----s~~~--l~~~~d----------------~~~~l~ei~rvL----kpGG~lii~~~ 236 (299)
+ |+.. +..-++ -.+.|+...+.+ ||||.++-++-
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 9 3322 222222 136888999999 99999888764
No 250
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=94.00 E-value=0.035 Score=54.24 Aligned_cols=48 Identities=8% Similarity=0.214 Sum_probs=41.4
Q ss_pred CceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEecc
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDL 186 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~ 186 (299)
..+||+.||+|+.-+..+.+-.+|+||+++++.++-|+.+ .+|+++-.
T Consensus 385 k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqa 440 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQA 440 (534)
T ss_pred cEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecch
Confidence 5689999999998888888889999999999999877763 77888844
No 251
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=93.94 E-value=0.035 Score=48.36 Aligned_cols=133 Identities=11% Similarity=0.103 Sum_probs=59.9
Q ss_pred cCCceeeccCcCCccc------cCCCCCCCeEEEEeCCHHHH-----Hh--cCCCCcEEEeccCCCCCC-CC--CCCCee
Q 022305 137 YYSEVFPPSNTPGVSH------FPPGYKQDRIVGMGMNEEEL-----KR--NPVLTEYVVQDLNLNPKL-PF--EDNSFD 200 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~------~~~~~~~~~v~gvD~S~~ml-----~~--a~~~~~~~~~D~~~~~~l-pf--~~~~FD 200 (299)
..+.|+++|.-.|.+. +......++|+|||+..... +. ...+++++++|.+..+.+ +. .....+
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 4578999998665422 22222568999999954333 22 114699999998432111 11 111123
Q ss_pred -EEEecccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHH---HHhhhhcCCCchhhhHHHHHHHhCCCC
Q 022305 201 -VITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKA---ISIWTSTGDADHVMIVGAYFHYAGGYE 271 (299)
Q Consensus 201 -~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~aGF~ 271 (299)
++++-.+-|.-.+..+.|+....+++||+++|++......+... -..|...+ .....+.+|++....|+
T Consensus 112 ~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~--~p~~av~~fL~~~~~f~ 184 (206)
T PF04989_consen 112 PVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGPGN--NPKTAVKEFLAEHPDFE 184 (206)
T ss_dssp SEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS---------------HHHHHHHHHTTTTEE
T ss_pred ceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhhhh--HHHHHHHHHHHHCCCcE
Confidence 23333444444677888899999999999999975543333222 12233221 23445666776433344
No 252
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.92 E-value=0.046 Score=51.27 Aligned_cols=87 Identities=18% Similarity=0.230 Sum_probs=59.8
Q ss_pred cCCceeeccCcCCccccCCCC---CCCeEEEEeCCHHHHHhcCCC-Cc-EEEe-ccCCCCCCCCCCCCeeEEEecccccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGY---KQDRIVGMGMNEEELKRNPVL-TE-YVVQ-DLNLNPKLPFEDNSFDVITNVVSVDY 210 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~---~~~~v~gvD~S~~ml~~a~~~-~~-~~~~-D~~~~~~lpf~~~~FD~Vis~~~l~~ 210 (299)
.-++|+=.|+| |.+++..++ .+++|+++|.|++-++.|++. .+ ++.. |. ...+--.+.||+|+..-.
T Consensus 166 pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~---~~~~~~~~~~d~ii~tv~--- 238 (339)
T COG1064 166 PGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDS---DALEAVKEIADAIIDTVG--- 238 (339)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCc---hhhHHhHhhCcEEEECCC---
Confidence 34678888998 887775443 358999999999999988886 22 2221 12 222222234999998754
Q ss_pred cCCHHHHHHHHHhhccCCcEEEEE
Q 022305 211 LTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 211 ~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
...+.+..+.||+||.+++.
T Consensus 239 ----~~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 239 ----PATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred ----hhhHHHHHHHHhcCCEEEEE
Confidence 45677888899999977653
No 253
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.67 E-value=0.32 Score=43.28 Aligned_cols=152 Identities=12% Similarity=0.100 Sum_probs=83.7
Q ss_pred CceeeccCcCCc-cccCCCCCCCeEEEEeCCHHHHHhc-CCC---CcEEEeccCCCCCCC---CCCCCeeEEEecccccc
Q 022305 139 SEVFPPSNTPGV-SHFPPGYKQDRIVGMGMNEEELKRN-PVL---TEYVVQDLNLNPKLP---FEDNSFDVITNVVSVDY 210 (299)
Q Consensus 139 ~~vLDiGcG~G~-~~~~~~~~~~~v~gvD~S~~ml~~a-~~~---~~~~~~D~~~~~~lp---f~~~~FD~Vis~~~l~~ 210 (299)
..+||+|+.+|. ...+.......|+|+|..-.++..- +.. +.+...|+ ..+. +.+ ..|+++|-.++-
T Consensus 81 kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~---r~l~~~~~~~-~~d~~v~DvSFI- 155 (245)
T COG1189 81 KVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNV---RYLTPEDFTE-KPDLIVIDVSFI- 155 (245)
T ss_pred CEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCCh---hhCCHHHccc-CCCeEEEEeehh-
Confidence 579999999885 2333333457899999998877532 222 22333444 2221 333 678999876654
Q ss_pred cCCHHHHHHHHHhhccCCcEEEEEecC-cchHHHHHHhhh-hcCCCchhhhHHHH--HHHhCCCCCCeeeecCCCCCCCC
Q 022305 211 LTKPIEVFKEMCQVLKPGGLAIVSFSN-RCFWTKAISIWT-STGDADHVMIVGAY--FHYAGGYEPPQAVDISPNPGRSD 286 (299)
Q Consensus 211 ~~d~~~~l~ei~rvLkpGG~lii~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~aGF~~v~~~~~~~~~~~~~ 286 (299)
....+|..+..+|+|+|.++.-+-+ -..-.+....-. -.....|.....+. +....||....+...+-..+..+
T Consensus 156 --SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~Spi~G~~GN 233 (245)
T COG1189 156 --SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKSPIKGGKGN 233 (245)
T ss_pred --hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEccCccCCCCc
Confidence 5678899999999999977664432 111111111000 11222343444442 22456898665543322222223
Q ss_pred CeEEEEEEecC
Q 022305 287 PMYVVYSRKAS 297 (299)
Q Consensus 287 p~~~v~arK~~ 297 (299)
-=|.+..+|.+
T Consensus 234 iE~l~~~~k~~ 244 (245)
T COG1189 234 IEFLLLLKKSG 244 (245)
T ss_pred EeeeeeeeccC
Confidence 34666666653
No 254
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=93.59 E-value=0.1 Score=46.74 Aligned_cols=108 Identities=13% Similarity=0.079 Sum_probs=61.5
Q ss_pred HHHHHHhhh---cCCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCCCCC
Q 022305 128 DPAIAALTK---YYSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFE 195 (299)
Q Consensus 128 ~~~~~~l~~---~~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~lpf~ 195 (299)
+.+.+.+.. ...+|+|+|||---..+ ....++..++|.||+..+++.... ..+....|+ ..- -+
T Consensus 93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl---~~~-~~ 168 (251)
T PF07091_consen 93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDL---LSD-PP 168 (251)
T ss_dssp HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-T---TTS-HT
T ss_pred HHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeee---ecc-CC
Confidence 334444433 35789999998543222 122245799999999999986443 356777787 332 24
Q ss_pred CCCeeEEEecccccccCCHHH-HHHHHHhhccCCcEEEEEecCcch
Q 022305 196 DNSFDVITNVVSVDYLTKPIE-VFKEMCQVLKPGGLAIVSFSNRCF 240 (299)
Q Consensus 196 ~~~FD~Vis~~~l~~~~d~~~-~l~ei~rvLkpGG~lii~~~~~~~ 240 (299)
....|+.+..=+++.++.... .--++...++ .=+++++||.+..
T Consensus 169 ~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL 213 (251)
T PF07091_consen 169 KEPADLALLLKTLPCLERQRRGAGLELLDALR-SPHVVVSFPTRSL 213 (251)
T ss_dssp TSEESEEEEET-HHHHHHHSTTHHHHHHHHSC-ESEEEEEEES---
T ss_pred CCCcchhhHHHHHHHHHHHhcchHHHHHHHhC-CCeEEEecccccc
Confidence 567999999888887753322 2223333333 1278889987543
No 255
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=93.59 E-value=0.093 Score=42.77 Aligned_cols=90 Identities=12% Similarity=0.147 Sum_probs=51.7
Q ss_pred cCCceeeccCcCCc-cccCCC-----CCCCeEEEEeCCHHHHHhcCCC-----------CcEEEeccCCCCCCCCCCCCe
Q 022305 137 YYSEVFPPSNTPGV-SHFPPG-----YKQDRIVGMGMNEEELKRNPVL-----------TEYVVQDLNLNPKLPFEDNSF 199 (299)
Q Consensus 137 ~~~~vLDiGcG~G~-~~~~~~-----~~~~~v~gvD~S~~ml~~a~~~-----------~~~~~~D~~~~~~lpf~~~~F 199 (299)
....|+|+|||.|. +.+... .++.+|+|||.++..++.+.++ .++..++. .... ..+..
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~ 100 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDI---ADES-SSDPP 100 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccch---hhhc-ccCCC
Confidence 35689999999995 222111 3678999999999998866543 22333332 1111 14456
Q ss_pred eEEEecccccccCCHH-HHHHHHHhhccCCcEEEEEec
Q 022305 200 DVITNVVSVDYLTKPI-EVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 200 D~Vis~~~l~~~~d~~-~~l~ei~rvLkpGG~lii~~~ 236 (299)
++++..+ -..++- .+|+-..+ |+-.+++.+|
T Consensus 101 ~~~vgLH---aCG~Ls~~~l~~~~~---~~~~~l~~vp 132 (141)
T PF13679_consen 101 DILVGLH---ACGDLSDRALRLFIR---PNARFLVLVP 132 (141)
T ss_pred eEEEEee---cccchHHHHHHHHHH---cCCCEEEEcC
Confidence 6666554 344443 34444444 5555555444
No 256
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=93.56 E-value=1.2 Score=39.96 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=69.6
Q ss_pred hhccccHHHHHHh----hhcCCceeeccCcCCc--cccCCCC-CCCeEEEEeCCH----HHHHhcCCC--CcEEEeccCC
Q 022305 122 FVTHIDDPAIAAL----TKYYSEVFPPSNTPGV--SHFPPGY-KQDRIVGMGMNE----EELKRNPVL--TEYVVQDLNL 188 (299)
Q Consensus 122 ~~~~l~~~~~~~l----~~~~~~vLDiGcG~G~--~~~~~~~-~~~~v~gvD~S~----~ml~~a~~~--~~~~~~D~~~ 188 (299)
|...|+..++.-+ .+.-.+||=+|.++|+ +|..... +..-|++++.|+ +.+..|+++ +--+..|+..
T Consensus 137 frSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArh 216 (317)
T KOG1596|consen 137 FRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARH 216 (317)
T ss_pred HHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCC
Confidence 4445544444333 3455789999999887 5665433 457899999996 445666665 4445667621
Q ss_pred CCCCCCCCCCeeEEEecccccccCCH-HHHHHHHHhhccCCcEEEEEecCcc
Q 022305 189 NPKLPFEDNSFDVITNVVSVDYLTKP-IEVFKEMCQVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 189 ~~~lpf~~~~FD~Vis~~~l~~~~d~-~~~l~ei~rvLkpGG~lii~~~~~~ 239 (299)
..+.-..-.-.|+|++-.. + +|. .-+.-+..-.||+||+++|++...|
T Consensus 217 P~KYRmlVgmVDvIFaDva--q-pdq~RivaLNA~~FLk~gGhfvisikanc 265 (317)
T KOG1596|consen 217 PAKYRMLVGMVDVIFADVA--Q-PDQARIVALNAQYFLKNGGHFVISIKANC 265 (317)
T ss_pred chheeeeeeeEEEEeccCC--C-chhhhhhhhhhhhhhccCCeEEEEEeccc
Confidence 1111122335677766421 1 233 3344577889999999999876544
No 257
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=93.14 E-value=0.14 Score=46.02 Aligned_cols=102 Identities=16% Similarity=0.113 Sum_probs=65.7
Q ss_pred cCCceeeccCcCCc-cccCCCCCCCeEEEEeCCHHHHH--hcCC-------C--CcEEEecc--CCCCCCCCCCCC-eeE
Q 022305 137 YYSEVFPPSNTPGV-SHFPPGYKQDRIVGMGMNEEELK--RNPV-------L--TEYVVQDL--NLNPKLPFEDNS-FDV 201 (299)
Q Consensus 137 ~~~~vLDiGcG~G~-~~~~~~~~~~~v~gvD~S~~ml~--~a~~-------~--~~~~~~D~--~~~~~lpf~~~~-FD~ 201 (299)
.+.++|++|+|+|. +.........+++-.|+...+.. .+.+ + .+..+..+ .......+.... ||+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 35689999999997 44444446788888888765543 2211 0 12333222 100111122233 999
Q ss_pred EEecccccccCCHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 202 ITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 202 Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
|+++.++.+-..+..++.-+...|-.+|.+++.++-+
T Consensus 166 ilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 166 ILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred EEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 9999999988888888888889998888777766543
No 258
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=93.13 E-value=0.34 Score=42.16 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=26.5
Q ss_pred CceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHh
Q 022305 139 SEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKR 174 (299)
Q Consensus 139 ~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~ 174 (299)
-.+.|||||=|. -.+...+|..-+.|++|-...-+.
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdY 99 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDY 99 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHH
Confidence 368999999664 445566688899999987665543
No 259
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=92.56 E-value=0.079 Score=47.91 Aligned_cols=85 Identities=13% Similarity=0.145 Sum_probs=56.6
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCC---CCeeEEEeccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFED---NSFDVITNVVS 207 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~---~~FD~Vis~~~ 207 (299)
.-..|||+|.|.|..+......+.+++++|+++.+.+.-++ +++++.+|+ ..+...+ +.-..|+++.
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~---l~~~~~~~~~~~~~~vv~Nl- 105 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDF---LKWDLYDLLKNQPLLVVGNL- 105 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-T---TTSCGGGHCSSSEEEEEEEE-
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecch---hccccHHhhcCCceEEEEEe-
Confidence 45689999999997444333334899999999999875433 578999999 6776544 4566777763
Q ss_pred ccccCCHHHHHHHHHhhccC
Q 022305 208 VDYLTKPIEVFKEMCQVLKP 227 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkp 227 (299)
.+ .--...+.++...-+.
T Consensus 106 -Py-~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 106 -PY-NISSPILRKLLELYRF 123 (262)
T ss_dssp -TG-TGHHHHHHHHHHHGGG
T ss_pred -cc-cchHHHHHHHhhcccc
Confidence 33 2234566666654344
No 260
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=92.55 E-value=0.054 Score=49.23 Aligned_cols=97 Identities=13% Similarity=0.081 Sum_probs=57.9
Q ss_pred cCCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCC-C--CcEE----EeccC-----CCC---C--CCCCC-C
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPV-L--TEYV----VQDLN-----LNP---K--LPFED-N 197 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~-~--~~~~----~~D~~-----~~~---~--lpf~~-~ 197 (299)
..++|||+|||+|.-.+.....+ ..+...|+|.+.++.-.- + +.+. ..|.. ... + +.+.. -
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~~ 195 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTERT 195 (282)
T ss_pred cCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcccc
Confidence 34689999999887333333233 788889999888742111 0 0000 00000 001 0 11111 2
Q ss_pred CeeEEEecccccccCCHHHH-HHHHHhhccCCcEEEE
Q 022305 198 SFDVITNVVSVDYLTKPIEV-FKEMCQVLKPGGLAIV 233 (299)
Q Consensus 198 ~FD~Vis~~~l~~~~d~~~~-l~ei~rvLkpGG~lii 233 (299)
.||+|.++.++.-.+..... .......++++|.+++
T Consensus 196 ~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 196 HYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred chhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhh
Confidence 79999999888877766666 6677778899997755
No 261
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=92.38 E-value=1.9 Score=37.14 Aligned_cols=98 Identities=12% Similarity=0.165 Sum_probs=56.4
Q ss_pred hhcCCceeeccCcCCc---cccCCCCCCCeEEEEeCCHHHHHhcCCCCcEEEe-ccCCCCCC-----CCCCCCeeEEEec
Q 022305 135 TKYYSEVFPPSNTPGV---SHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQ-DLNLNPKL-----PFEDNSFDVITNV 205 (299)
Q Consensus 135 ~~~~~~vLDiGcG~G~---~~~~~~~~~~~v~gvD~S~~ml~~a~~~~~~~~~-D~~~~~~l-----pf~~~~FD~Vis~ 205 (299)
.+...+|||+||.+|. -......|.+.|.|||+-+-. ..+.+.++.+ |+.+.+.. ..++...|+|+|-
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~---p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSD 143 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE---PPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSD 143 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc---CCCCcccccccccCCHHHHHHHHHhCCCCcccEEEec
Confidence 3445799999999886 111223377899999985421 1222455554 55321110 1356789999976
Q ss_pred cccc----ccCCHH-------HHHHHHHhhccCCcEEEEEe
Q 022305 206 VSVD----YLTKPI-------EVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 206 ~~l~----~~~d~~-------~~l~ei~rvLkpGG~lii~~ 235 (299)
..-. -+.|.. .++.-....++|+|.++.-+
T Consensus 144 MapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 144 MAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred cCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 4321 112222 34444456778999998864
No 262
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.09 E-value=0.25 Score=48.96 Aligned_cols=96 Identities=16% Similarity=0.259 Sum_probs=61.7
Q ss_pred CCceeeccCc-CCcccc-CCCCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCCC--------CC--C--------CCC
Q 022305 138 YSEVFPPSNT-PGVSHF-PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNP--------KL--P--------FED 196 (299)
Q Consensus 138 ~~~vLDiGcG-~G~~~~-~~~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~--------~l--p--------f~~ 196 (299)
..+|+=+||| .|.... .....+++|+++|.+++-++++++. .++...|..... .+ . +.+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~ 244 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAE 244 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHh
Confidence 4678899998 554222 1222467899999999999988774 454433321000 00 0 111
Q ss_pred --CCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEE
Q 022305 197 --NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 197 --~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
+.+|+||.......-+.|.-+.+++.+.+||||.++.
T Consensus 245 ~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVd 283 (509)
T PRK09424 245 QAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVD 283 (509)
T ss_pred ccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEE
Confidence 4699999887655444565556999999999997654
No 263
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=92.04 E-value=0.068 Score=43.09 Aligned_cols=38 Identities=8% Similarity=0.030 Sum_probs=28.1
Q ss_pred ceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCC
Q 022305 140 EVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPV 177 (299)
Q Consensus 140 ~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~ 177 (299)
.++|+|||.|...+ ....+..+++++|+++.+.+.+++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~ 40 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEE 40 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHH
Confidence 37999999997322 333345689999999999876544
No 264
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=91.99 E-value=0.2 Score=43.74 Aligned_cols=114 Identities=15% Similarity=0.113 Sum_probs=63.8
Q ss_pred eeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCC-CeeEEEecccc
Q 022305 141 VFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDN-SFDVITNVVSV 208 (299)
Q Consensus 141 vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~-~FD~Vis~~~l 208 (299)
|.|+||--|. ..+.......+++++|+++..++.|++ ++++..+|.- .. ++.+ ..|+|+...+-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL--~~--l~~~e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGL--EV--LKPGEDVDTIVIAGMG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGG--GG----GGG---EEEEEEE-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcc--cc--cCCCCCCCEEEEecCC
Confidence 5799998774 222223234589999999999998765 2778888851 22 3333 36877755332
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecC
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDIS 279 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~ 279 (299)
-. -..+.|++....++..-.||+.-.+ +...+.+++ ...||...+-.-+.
T Consensus 77 G~--lI~~ILe~~~~~~~~~~~lILqP~~------------------~~~~LR~~L-~~~gf~I~~E~lv~ 126 (205)
T PF04816_consen 77 GE--LIIEILEAGPEKLSSAKRLILQPNT------------------HAYELRRWL-YENGFEIIDEDLVE 126 (205)
T ss_dssp HH--HHHHHHHHTGGGGTT--EEEEEESS-------------------HHHHHHHH-HHTTEEEEEEEEEE
T ss_pred HH--HHHHHHHhhHHHhccCCeEEEeCCC------------------ChHHHHHHH-HHCCCEEEEeEEEe
Confidence 11 2456677777777766677775221 122334444 45889877665555
No 265
>PRK13699 putative methylase; Provisional
Probab=91.69 E-value=0.13 Score=45.59 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=31.5
Q ss_pred cEEEeccCCCCCC--CCCCCCeeEEEec--cc--ccc-----c--C---C-HHHHHHHHHhhccCCcEEEE
Q 022305 180 EYVVQDLNLNPKL--PFEDNSFDVITNV--VS--VDY-----L--T---K-PIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 180 ~~~~~D~~~~~~l--pf~~~~FD~Vis~--~~--l~~-----~--~---d-~~~~l~ei~rvLkpGG~lii 233 (299)
+++.+|. .++ .++++++|+|+.. +. ..+ + . + ...+++|++|+|||||.+++
T Consensus 3 ~l~~gD~---le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 3 RFILGNC---IDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred eEEechH---HHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3455565 222 4677888888754 10 010 0 0 1 25789999999999998776
No 266
>PRK11524 putative methyltransferase; Provisional
Probab=90.98 E-value=0.13 Score=46.99 Aligned_cols=53 Identities=19% Similarity=0.190 Sum_probs=33.5
Q ss_pred cEEEeccCCCCCC--CCCCCCeeEEEec--ccc--c------------ccCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 180 EYVVQDLNLNPKL--PFEDNSFDVITNV--VSV--D------------YLTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 180 ~~~~~D~~~~~~l--pf~~~~FD~Vis~--~~l--~------------~~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
.++++|. .+. .+++++||+|++. +-+ . |..-....+.++.|+|||||.+++..
T Consensus 10 ~i~~gD~---~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 10 TIIHGDA---LTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred EEEeccH---HHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 4556665 332 3556778888873 111 0 11113578999999999999888753
No 267
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=90.70 E-value=1.6 Score=37.95 Aligned_cols=96 Identities=16% Similarity=0.113 Sum_probs=52.7
Q ss_pred cCCceeeccCcCCc--cccC-CCCCCCeEEEEeCCHHHH----------HhcCC----CCcEEEeccCCCCCCCCCCCCe
Q 022305 137 YYSEVFPPSNTPGV--SHFP-PGYKQDRIVGMGMNEEEL----------KRNPV----LTEYVVQDLNLNPKLPFEDNSF 199 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~-~~~~~~~v~gvD~S~~ml----------~~a~~----~~~~~~~D~~~~~~lpf~~~~F 199 (299)
.-..|+|+=.|.|. ..+. ..-+...|++.-..+... ..+++ +.+.+-.+. ..++ +.+..
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~---~A~~-~pq~~ 123 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPL---VALG-APQKL 123 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcc---cccC-CCCcc
Confidence 34678898777773 2222 122345777765444321 11211 233333333 3344 44556
Q ss_pred eEEEeccccc-------ccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 200 DVITNVVSVD-------YLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 200 D~Vis~~~l~-------~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
|+++....-| |-....++.+++++.|||||.+++...
T Consensus 124 d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 124 DLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred cccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 6666532222 123457899999999999998777643
No 268
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=90.43 E-value=0.35 Score=46.93 Aligned_cols=97 Identities=12% Similarity=0.172 Sum_probs=60.1
Q ss_pred CCceeeccCcCCccccCC--CCC--CCeEEEEeCCHHHHHhcCCC-------CcEEEec-cCCCCCCCC-CCCCeeEEEe
Q 022305 138 YSEVFPPSNTPGVSHFPP--GYK--QDRIVGMGMNEEELKRNPVL-------TEYVVQD-LNLNPKLPF-EDNSFDVITN 204 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~--~~~--~~~v~gvD~S~~ml~~a~~~-------~~~~~~D-~~~~~~lpf-~~~~FD~Vis 204 (299)
++.++|+|.|.|.+..+. .++ ...++.||.|..|++..... -...+.. .-....+|. ..+.||+|++
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ 280 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC 280 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEe
Confidence 456889999877633332 222 35799999999999865432 1111111 100134454 3456999999
Q ss_pred cccccccCCH---HHHHHHHH-hhccCCcEEEEE
Q 022305 205 VVSVDYLTKP---IEVFKEMC-QVLKPGGLAIVS 234 (299)
Q Consensus 205 ~~~l~~~~d~---~~~l~ei~-rvLkpGG~lii~ 234 (299)
.+.++++.+. ..+.++.+ +..++||.+++.
T Consensus 281 ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViI 314 (491)
T KOG2539|consen 281 AHKLHELGSKFSRLDVPESLWRKTDRSGYFLVII 314 (491)
T ss_pred eeeeeccCCchhhhhhhHHHHHhccCCCceEEEE
Confidence 9999999754 34455554 456888866654
No 269
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=90.13 E-value=0.57 Score=44.27 Aligned_cols=115 Identities=19% Similarity=0.270 Sum_probs=72.4
Q ss_pred cccCcc-hhhccccHHHHHHhhhc-CCceeeccCcCCccccCCCC--CCCeEEEEeCCHHHHHhcCCC--------CcEE
Q 022305 115 LFYETP-RFVTHIDDPAIAALTKY-YSEVFPPSNTPGVSHFPPGY--KQDRIVGMGMNEEELKRNPVL--------TEYV 182 (299)
Q Consensus 115 ~~y~~~-~~~~~l~~~~~~~l~~~-~~~vLDiGcG~G~~~~~~~~--~~~~v~gvD~S~~ml~~a~~~--------~~~~ 182 (299)
.||... ++...+.-.++..+.+. ..+|+|.=+|+|..-+.... ...+++.-|+||++.+..+++ ...+
T Consensus 28 VFYNP~m~~NRDlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~ 107 (380)
T COG1867 28 VFYNPAMEFNRDLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVI 107 (380)
T ss_pred ceeCchhhhccchhHHHHHHhhccCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceee
Confidence 344432 34444544455555543 57899999999984443332 334899999999999876654 2333
Q ss_pred EeccCCCCCCCCCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 183 VQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 183 ~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
..|.| .-+--....||+|= +.-+..|.-++....+.+|.||++.++-
T Consensus 108 n~DAN--~lm~~~~~~fd~ID----iDPFGSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 108 NKDAN--ALLHELHRAFDVID----IDPFGSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred cchHH--HHHHhcCCCccEEe----cCCCCCCchHHHHHHHHhhcCCEEEEEe
Confidence 34542 11111125566652 2334467889999999999999998873
No 270
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=89.92 E-value=0.098 Score=48.25 Aligned_cols=70 Identities=9% Similarity=-0.051 Sum_probs=35.5
Q ss_pred CceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCCC----------CcEEEeccCC--CCCCCCCCCCeeEEEe
Q 022305 139 SEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPVL----------TEYVVQDLNL--NPKLPFEDNSFDVITN 204 (299)
Q Consensus 139 ~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~----------~~~~~~D~~~--~~~lpf~~~~FD~Vis 204 (299)
-++||||+|... ..+.....+.+++|+|+++..++.|+++ ++++...-.. ...+..+++.||+.+|
T Consensus 104 v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmC 183 (299)
T PF05971_consen 104 VRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMC 183 (299)
T ss_dssp -EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE
T ss_pred eEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEec
Confidence 469999998553 2222233478999999999999977652 5555443210 0112234568999999
Q ss_pred cccc
Q 022305 205 VVSV 208 (299)
Q Consensus 205 ~~~l 208 (299)
+==+
T Consensus 184 NPPF 187 (299)
T PF05971_consen 184 NPPF 187 (299)
T ss_dssp ----
T ss_pred CCcc
Confidence 8433
No 271
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=89.45 E-value=0.11 Score=44.81 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=37.1
Q ss_pred cHHHHHHhhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcC
Q 022305 127 DDPAIAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNP 176 (299)
Q Consensus 127 ~~~~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~ 176 (299)
.+.++....+..+.|||.=||+|+...+....+.+.+|+|++++..+.|+
T Consensus 181 ~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 181 IERLIKASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp HHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHH
T ss_pred HHHHHHhhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhc
Confidence 34455555667788999999999977776667889999999999988764
No 272
>PRK11524 putative methyltransferase; Provisional
Probab=88.36 E-value=0.2 Score=45.90 Aligned_cols=52 Identities=15% Similarity=0.063 Sum_probs=42.9
Q ss_pred HHHHHHhhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCCC
Q 022305 128 DPAIAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVLT 179 (299)
Q Consensus 128 ~~~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~~ 179 (299)
+.++....+..+.|||.=||+|+..++....+.+.+|+|++++..+.|.+++
T Consensus 199 erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl 250 (284)
T PRK11524 199 KRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRL 250 (284)
T ss_pred HHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHH
Confidence 4445555667788999999999988877777899999999999999888764
No 273
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=86.96 E-value=0.41 Score=47.48 Aligned_cols=94 Identities=13% Similarity=0.221 Sum_probs=61.0
Q ss_pred CceeeccCc-CCcccc-CCCCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCC--------C----C--------CCCC
Q 022305 139 SEVFPPSNT-PGVSHF-PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLN--------P----K--------LPFE 195 (299)
Q Consensus 139 ~~vLDiGcG-~G~~~~-~~~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~--------~----~--------lpf~ 195 (299)
.+++=+|+| .|.... .....++.|+.+|.+++-++.++.. .+++..|.... . . ++-.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~ 244 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQ 244 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHH
Confidence 578888887 554222 1122367899999999988877763 34444333100 0 0 1111
Q ss_pred CCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEE
Q 022305 196 DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAI 232 (299)
Q Consensus 196 ~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~li 232 (299)
-..+|+|++.-.+.--+.|.-+.+++.+.+|||+.++
T Consensus 245 ~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 245 AKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred hCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 2569999988766666667668899999999999765
No 274
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=86.69 E-value=0.55 Score=45.05 Aligned_cols=98 Identities=21% Similarity=0.231 Sum_probs=63.4
Q ss_pred hcCCceeeccCcCCc--cccCCCCCC-CeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCC---CCCCCeeE
Q 022305 136 KYYSEVFPPSNTPGV--SHFPPGYKQ-DRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLP---FEDNSFDV 201 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~~~~~-~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lp---f~~~~FD~ 201 (299)
+...+|||.++.+|. .+++..+.+ +.|++.|.+.+-++.-..+ ......|. ..+| |+. +||-
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~---~ef~~~~~~~-~fDR 315 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDG---REFPEKEFPG-SFDR 315 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCc---ccccccccCc-ccce
Confidence 345789999998774 555554443 7899999998877654332 33444555 4443 444 8999
Q ss_pred EE----ecc--ccc------ccC---C-------HHHHHHHHHhhccCCcEEEEEecC
Q 022305 202 IT----NVV--SVD------YLT---K-------PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 202 Vi----s~~--~l~------~~~---d-------~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
|+ |+. ++. +.. | ..+.|......+|+||+++-++-.
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 98 443 211 111 1 236777888999999999887543
No 275
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=86.52 E-value=1.4 Score=41.84 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=57.0
Q ss_pred CCceeeccCcC-Ccc--ccCCCCCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCC-----C-CC-CCCCeeEEEeccc
Q 022305 138 YSEVFPPSNTP-GVS--HFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPK-----L-PF-EDNSFDVITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~-G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~-----l-pf-~~~~FD~Vis~~~ 207 (299)
-.+||..|||. |.. .++......+++++|.++++++.+++.......+... .. + .+ ..+.+|+|+....
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~-~~~~~~~l~~~~~~~~~D~vld~vg 263 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEE-VDDVVEALRELTGGRGPDVCIDAVG 263 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCc-chHHHHHHHHHcCCCCCCEEEECCC
Confidence 35788888863 432 2222222236999999999998876641111112100 11 1 12 2346999987532
Q ss_pred c-----------cc----cCCHHHHHHHHHhhccCCcEEEEE
Q 022305 208 V-----------DY----LTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 208 l-----------~~----~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
- .| ..+....+.++.+.|+|+|.+++-
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 264 MEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred CcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 1 11 245677899999999999977653
No 276
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=85.11 E-value=0.66 Score=43.00 Aligned_cols=75 Identities=11% Similarity=0.056 Sum_probs=49.3
Q ss_pred HHHHHHhh-hcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCCC----
Q 022305 128 DPAIAALT-KYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLP---- 193 (299)
Q Consensus 128 ~~~~~~l~-~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~lp---- 193 (299)
+++++.|. +....++|.-+|.|. ..+....+.++|+|+|.++.+++.+++ +++++.++. .++.
T Consensus 10 ~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF---~~l~~~l~ 86 (305)
T TIGR00006 10 DEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNF---ANFFEHLD 86 (305)
T ss_pred HHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCH---HHHHHHHH
Confidence 44566663 344579999999775 333444445899999999999987754 355666665 3332
Q ss_pred -CCCCCeeEEEec
Q 022305 194 -FEDNSFDVITNV 205 (299)
Q Consensus 194 -f~~~~FD~Vis~ 205 (299)
...+++|.|+..
T Consensus 87 ~~~~~~vDgIl~D 99 (305)
T TIGR00006 87 ELLVTKIDGILVD 99 (305)
T ss_pred hcCCCcccEEEEe
Confidence 133568888743
No 277
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=84.84 E-value=2.3 Score=42.09 Aligned_cols=100 Identities=16% Similarity=0.222 Sum_probs=61.4
Q ss_pred cCCceeeccCcCCc------cccCCCCCCCeEEEEeCCHHHHHhcCCC-----Cc----EEEeccCCCCCCCC----CCC
Q 022305 137 YYSEVFPPSNTPGV------SHFPPGYKQDRIVGMGMNEEELKRNPVL-----TE----YVVQDLNLNPKLPF----EDN 197 (299)
Q Consensus 137 ~~~~vLDiGcG~G~------~~~~~~~~~~~v~gvD~S~~ml~~a~~~-----~~----~~~~D~~~~~~lpf----~~~ 197 (299)
...+|.|+.||+|. ..+........++|.|+++.+...++-+ ++ ...+|-. .+... ..+
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl--~~~~~~~~~~~~ 263 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTL--SNPKHDDKDDKG 263 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccc--cCCcccccCCcc
Confidence 55689999999995 1111111136799999999998877643 32 2233321 11112 447
Q ss_pred CeeEEEec--cc-ccccC---------------------C-HHHHHHHHHhhccCCcEEEEEecCc
Q 022305 198 SFDVITNV--VS-VDYLT---------------------K-PIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 198 ~FD~Vis~--~~-l~~~~---------------------d-~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
.||.|+++ ++ -.|.. . ...+++.+.+.|+|||..-|.+++.
T Consensus 264 ~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 264 KFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred ceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 79999976 11 11110 1 1578899999999999766666653
No 278
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=84.68 E-value=1.5 Score=38.90 Aligned_cols=93 Identities=17% Similarity=0.253 Sum_probs=55.7
Q ss_pred CCceeeccCcCCc--c----ccCC--C---CCCCeEEEEeCCHHHHHhcCC-CCcEEEeccCCCCCC-----CCCCCCee
Q 022305 138 YSEVFPPSNTPGV--S----HFPP--G---YKQDRIVGMGMNEEELKRNPV-LTEYVVQDLNLNPKL-----PFEDNSFD 200 (299)
Q Consensus 138 ~~~vLDiGcG~G~--~----~~~~--~---~~~~~v~gvD~S~~ml~~a~~-~~~~~~~D~~~~~~l-----pf~~~~FD 200 (299)
..+++|++..+|. . .+.. . .....+++||+-+ | |.- .+.-+++|++....+ -|..+.-|
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-M---aPI~GV~qlq~DIT~~stae~Ii~hfggekAd 117 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-M---APIEGVIQLQGDITSASTAEAIIEHFGGEKAD 117 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-C---CccCceEEeecccCCHhHHHHHHHHhCCCCcc
Confidence 4678999887775 1 1111 1 1112599999865 2 221 255677887322111 25667899
Q ss_pred EEEeccc-----ccccCC------HHHHHHHHHhhccCCcEEEEE
Q 022305 201 VITNVVS-----VDYLTK------PIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 201 ~Vis~~~-----l~~~~d------~~~~l~ei~rvLkpGG~lii~ 234 (299)
+|+|-.. +|-+++ +..+|.-...+|||||.|+--
T Consensus 118 lVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 118 LVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred EEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 9998644 443332 234566678999999999865
No 279
>PRK13699 putative methylase; Provisional
Probab=84.59 E-value=0.41 Score=42.40 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=41.1
Q ss_pred HHHHHHhhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC
Q 022305 128 DPAIAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL 178 (299)
Q Consensus 128 ~~~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~ 178 (299)
+.++....+..+.|||.=||+|+...+....+.+.+|+|++++..+.+.++
T Consensus 154 ~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r 204 (227)
T PRK13699 154 QPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQR 204 (227)
T ss_pred HHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHH
Confidence 444555566677899999999997777766788999999999998877664
No 280
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=84.51 E-value=3 Score=40.85 Aligned_cols=108 Identities=17% Similarity=0.166 Sum_probs=66.6
Q ss_pred CceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCCCCcEEEeccC---CCCCCC---------CCCCCeeEEEe
Q 022305 139 SEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLN---LNPKLP---------FEDNSFDVITN 204 (299)
Q Consensus 139 ~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~---~~~~lp---------f~~~~FD~Vis 204 (299)
.++|-+|-|+|. ..+-...+...+++|++.|+|++.+++...|.+.|-+ ....++ -++..||+++.
T Consensus 297 ~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~ 376 (482)
T KOG2352|consen 297 GKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLMV 376 (482)
T ss_pred CcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEEE
Confidence 345555555553 4445566778999999999999999886544443310 001111 24667998872
Q ss_pred ----cccccccCC------HHHHHHHHHhhccCCcEEEEEe--cCcchHHHHHHh
Q 022305 205 ----VVSVDYLTK------PIEVFKEMCQVLKPGGLAIVSF--SNRCFWTKAISI 247 (299)
Q Consensus 205 ----~~~l~~~~d------~~~~l~ei~rvLkpGG~lii~~--~~~~~~~~~~~~ 247 (299)
.. .|-+.- -..+|..++.+|.|.|.++|-. .+..+..+....
T Consensus 377 dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~ 430 (482)
T KOG2352|consen 377 DVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMN 430 (482)
T ss_pred ECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHh
Confidence 23 233321 2467888999999999998864 334444444433
No 281
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=84.39 E-value=1 Score=43.07 Aligned_cols=55 Identities=16% Similarity=0.289 Sum_probs=44.2
Q ss_pred CCcEEEeccCCCCCCC-CCCCCeeEEEecccccccC--CHHHHHHHHHhhccCCcEEEEE
Q 022305 178 LTEYVVQDLNLNPKLP-FEDNSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 178 ~~~~~~~D~~~~~~lp-f~~~~FD~Vis~~~l~~~~--d~~~~l~ei~rvLkpGG~lii~ 234 (299)
+++++.+++. +-+. .+++++|.++.+..+.|++ +..+.++++.|.++|||.+++-
T Consensus 276 rv~i~t~si~--~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~R 333 (380)
T PF11899_consen 276 RVRIHTDSIE--EVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWR 333 (380)
T ss_pred eEEEEeccHH--HHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 4777777772 2222 5689999999999999996 4568899999999999998884
No 282
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=83.61 E-value=2.1 Score=39.40 Aligned_cols=95 Identities=17% Similarity=0.125 Sum_probs=61.3
Q ss_pred cCCceeeccCcCC-ccccC-CCCCCCeEEEEeCCHHHHHhcCC------------CCcEEEeccCCCCCC--CCCCCCee
Q 022305 137 YYSEVFPPSNTPG-VSHFP-PGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKL--PFEDNSFD 200 (299)
Q Consensus 137 ~~~~vLDiGcG~G-~~~~~-~~~~~~~v~gvD~S~~ml~~a~~------------~~~~~~~D~~~~~~l--pf~~~~FD 200 (299)
.++++|-+|.|-| ....- ....-.++.-+|+.+..++..++ ++....+|. -.+ ....++||
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG---~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDG---FLFLEDLKENPFD 197 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccH---HHHHHHhccCCce
Confidence 3578999998855 32222 22223578888998888875443 366777776 222 23478999
Q ss_pred EEEecccccccC----CHHHHHHHHHhhccCCcEEEEE
Q 022305 201 VITNVVSVDYLT----KPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 201 ~Vis~~~l~~~~----d~~~~l~ei~rvLkpGG~lii~ 234 (299)
+|+.-.+=.-.+ -...++.-+.+.||+||++++.
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 998543211111 1246778899999999988775
No 283
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=83.51 E-value=4.4 Score=36.63 Aligned_cols=107 Identities=13% Similarity=0.091 Sum_probs=68.4
Q ss_pred HHHHhhhcCCceeeccCcCCccccCCCCC-CCeEEEEeCCHHHHH------h----cCCCCcEEEeccCCCCCC------
Q 022305 130 AIAALTKYYSEVFPPSNTPGVSHFPPGYK-QDRIVGMGMNEEELK------R----NPVLTEYVVQDLNLNPKL------ 192 (299)
Q Consensus 130 ~~~~l~~~~~~vLDiGcG~G~~~~~~~~~-~~~v~gvD~S~~ml~------~----a~~~~~~~~~D~~~~~~l------ 192 (299)
+.+.+.+....|+.+|||-=+..+....+ +..++=+|.-+.+-. . ...+..++.+|++ ..+
T Consensus 74 i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~--~~w~~~L~~ 151 (260)
T TIGR00027 74 LLAAVAAGIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR--QDWPAALAA 151 (260)
T ss_pred HHHHHhcCCcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch--hhHHHHHHh
Confidence 33344444567999999865544444333 467777776553321 1 1223667778874 222
Q ss_pred -CCCCCCeeEEEecccccccC--CHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 193 -PFEDNSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 193 -pf~~~~FD~Vis~~~l~~~~--d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
.|..+.--++++-.++.|++ +..++|+.+.+...||+.++++..++
T Consensus 152 ~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 152 AGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred CCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 13233344788888899996 45679999999888999999997654
No 284
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=82.71 E-value=1.2 Score=44.03 Aligned_cols=90 Identities=13% Similarity=0.204 Sum_probs=62.2
Q ss_pred CceeeccCcCCc---ccc---CCCCCCCeEEEEeCCHHHHHhcC--------CCCcEEEeccCCCCCCCCCCCCeeEEEe
Q 022305 139 SEVFPPSNTPGV---SHF---PPGYKQDRIVGMGMNEEELKRNP--------VLTEYVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 139 ~~vLDiGcG~G~---~~~---~~~~~~~~v~gvD~S~~ml~~a~--------~~~~~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
..|+-+|.|-|- ..+ .......++++|+-+|+++-.-. .+++.+..|+ ..++-+..+.|+++|
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DM---R~w~ap~eq~DI~VS 445 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDM---RKWNAPREQADIIVS 445 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccc---cccCCchhhccchHH
Confidence 346777888773 111 11113568999999998865322 2488999999 788755688999987
Q ss_pred cccccccCC---HHHHHHHHHhhccCCcEEE
Q 022305 205 VVSVDYLTK---PIEVFKEMCQVLKPGGLAI 232 (299)
Q Consensus 205 ~~~l~~~~d---~~~~l~ei~rvLkpGG~li 232 (299)
-. |-.+.| -++.|.-+.+.|||+|..|
T Consensus 446 EL-LGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 446 EL-LGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred Hh-hccccCccCCHHHHHHHHhhcCCCceEc
Confidence 54 333332 2688999999999998654
No 285
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=82.59 E-value=1.8 Score=39.82 Aligned_cols=36 Identities=31% Similarity=0.411 Sum_probs=27.4
Q ss_pred CCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 196 DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 196 ~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.+.||+|+..+..-|+=.|. +.++++|||.++++..
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEta 255 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETA 255 (289)
T ss_pred cCCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcc
Confidence 47799999776655553443 7779999999999865
No 286
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=81.40 E-value=2.4 Score=40.60 Aligned_cols=46 Identities=24% Similarity=0.381 Sum_probs=34.5
Q ss_pred CCCCCCeeEEEecccccccCCHH--------------------------------------HHHHHHHhhccCCcEEEEE
Q 022305 193 PFEDNSFDVITNVVSVDYLTKPI--------------------------------------EVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 193 pf~~~~FD~Vis~~~l~~~~d~~--------------------------------------~~l~ei~rvLkpGG~lii~ 234 (299)
-|++++.++++|++++||+.+.+ .+|+-=.+-|.|||.+++.
T Consensus 157 LfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 157 LFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred ccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence 48899999999999999996311 2333345668999999998
Q ss_pred ecCc
Q 022305 235 FSNR 238 (299)
Q Consensus 235 ~~~~ 238 (299)
+..+
T Consensus 237 ~~Gr 240 (386)
T PLN02668 237 CLGR 240 (386)
T ss_pred EecC
Confidence 7553
No 287
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=81.23 E-value=1.5 Score=40.70 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=51.8
Q ss_pred CCceeeccCcCCccccCC---CCCCC-eEEEEeCCHHHHHhcCCC-CcEEEeccCC--CCCCCCCCCCeeEEEecccccc
Q 022305 138 YSEVFPPSNTPGVSHFPP---GYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNL--NPKLPFEDNSFDVITNVVSVDY 210 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~---~~~~~-~v~gvD~S~~ml~~a~~~-~~~~~~D~~~--~~~lpf~~~~FD~Vis~~~l~~ 210 (299)
-++||=.||| |.+.+.. ...+. +|+++|.+++-++.+++. .+.+ .|... ...+....+.||+|+-...
T Consensus 170 g~~VlV~G~G-~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~v-i~~~~~~~~~~~~~~g~~D~vid~~G--- 244 (343)
T PRK09880 170 GKRVFVSGVG-PIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKL-VNPQNDDLDHYKAEKGYFDVSFEVSG--- 244 (343)
T ss_pred CCEEEEECCC-HHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEE-ecCCcccHHHHhccCCCCCEEEECCC---
Confidence 3577878875 3433321 12344 799999999999888764 2221 12100 0111111235898876533
Q ss_pred cCCHHHHHHHHHhhccCCcEEEE
Q 022305 211 LTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 211 ~~d~~~~l~ei~rvLkpGG~lii 233 (299)
. ...+....+.|++||.+++
T Consensus 245 --~-~~~~~~~~~~l~~~G~iv~ 264 (343)
T PRK09880 245 --H-PSSINTCLEVTRAKGVMVQ 264 (343)
T ss_pred --C-HHHHHHHHHHhhcCCEEEE
Confidence 1 3467888899999997765
No 288
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=81.20 E-value=1.5 Score=41.23 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=14.9
Q ss_pred CCCCCCCCCeeEEEecccccccC
Q 022305 190 PKLPFEDNSFDVITNVVSVDYLT 212 (299)
Q Consensus 190 ~~lpf~~~~FD~Vis~~~l~~~~ 212 (299)
..--|++++.|+++|.+++||+.
T Consensus 99 y~rLfP~~Svh~~~Ss~alHWLS 121 (334)
T PF03492_consen 99 YGRLFPSNSVHFGHSSYALHWLS 121 (334)
T ss_dssp TS--S-TT-EEEEEEES-TTB-S
T ss_pred hhccCCCCceEEEEEechhhhcc
Confidence 34448999999999999999994
No 289
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=80.71 E-value=0.54 Score=36.70 Aligned_cols=32 Identities=6% Similarity=-0.024 Sum_probs=22.1
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCC
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMN 168 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S 168 (299)
.+...+|+|||.|........-+..-.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence 34579999999997433333346677888864
No 290
>PHA01634 hypothetical protein
Probab=80.19 E-value=3.6 Score=33.29 Aligned_cols=66 Identities=12% Similarity=0.034 Sum_probs=43.9
Q ss_pred CCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCCCCc-EEEeccC-CCCCCCCCCCCeeEEE
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPVLTE-YVVQDLN-LNPKLPFEDNSFDVIT 203 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~~~~-~~~~D~~-~~~~lpf~~~~FD~Vi 203 (299)
-.+|+|+|.+.|.+.+-..+.+ ..|+++++++...+..++.+. +...|-. .....+-.-+.||+.+
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~ 97 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFV 97 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEE
Confidence 3689999999998777666666 479999999999887766432 2222210 0123443446688765
No 291
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=79.79 E-value=0.36 Score=42.96 Aligned_cols=69 Identities=17% Similarity=0.095 Sum_probs=38.6
Q ss_pred CceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHh-------cC----------CCCcEEEeccCCCCCCCCCCCCeeE
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKR-------NP----------VLTEYVVQDLNLNPKLPFEDNSFDV 201 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~-------a~----------~~~~~~~~D~~~~~~lpf~~~~FD~ 201 (299)
.+|||.-+|-|...+.....+++|++++-||-+-.. +. ++++++.+|.. +-|..++++||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~--~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDAL--EYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CC--CHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHH--HHHhhcCCCCCE
Confidence 489999999998555444457899999999876431 11 13788888873 345667899999
Q ss_pred EEeccccc
Q 022305 202 ITNVVSVD 209 (299)
Q Consensus 202 Vis~~~l~ 209 (299)
|..-=.+.
T Consensus 155 VY~DPMFp 162 (234)
T PF04445_consen 155 VYFDPMFP 162 (234)
T ss_dssp EEE--S--
T ss_pred EEECCCCC
Confidence 99654333
No 292
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=79.16 E-value=0.38 Score=42.24 Aligned_cols=40 Identities=13% Similarity=0.185 Sum_probs=26.4
Q ss_pred CceeeccCcCCc----cccCCCCCCCeEEEEeCCHHHHHhcCCC
Q 022305 139 SEVFPPSNTPGV----SHFPPGYKQDRIVGMGMNEEELKRNPVL 178 (299)
Q Consensus 139 ~~vLDiGcG~G~----~~~~~~~~~~~v~gvD~S~~ml~~a~~~ 178 (299)
-.+.|.+||+|. .-+.....-..|+|-|+++++|+.|+++
T Consensus 53 ~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kN 96 (246)
T PF11599_consen 53 YTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKN 96 (246)
T ss_dssp EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHH
T ss_pred eeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHh
Confidence 479999999984 1111111236899999999999987663
No 293
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=78.32 E-value=2.6 Score=39.65 Aligned_cols=89 Identities=17% Similarity=0.233 Sum_probs=57.5
Q ss_pred ceeeccCc-CCccc--cCCCCCCCeEEEEeCCHHHHHhcCCC--CcEEEeccCCCCC------CCCCC-CCeeEEEeccc
Q 022305 140 EVFPPSNT-PGVSH--FPPGYKQDRIVGMGMNEEELKRNPVL--TEYVVQDLNLNPK------LPFED-NSFDVITNVVS 207 (299)
Q Consensus 140 ~vLDiGcG-~G~~~--~~~~~~~~~v~gvD~S~~ml~~a~~~--~~~~~~D~~~~~~------lpf~~-~~FD~Vis~~~ 207 (299)
+++=+||| -|... ........+|+.+|.+++=++.|++. .+.+.... +. +.... ..||+|+=...
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~---~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPS---EDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCc---cccHHHHHHHHhCCCCCCEEEECCC
Confidence 68999998 45422 23333457999999999999999873 22222221 11 01112 36999985544
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEE-EEecC
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAI-VSFSN 237 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~li-i~~~~ 237 (299)
...++.++.+++||||.++ +.+..
T Consensus 248 ------~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 248 ------SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred ------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 3448899999999999665 45554
No 294
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=76.14 E-value=1.1 Score=42.79 Aligned_cols=93 Identities=23% Similarity=0.251 Sum_probs=58.7
Q ss_pred CceeeccCcCCccccCC--C-CCCCeEEEEeCCHHHHHhcCCC----------CcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 139 SEVFPPSNTPGVSHFPP--G-YKQDRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~--~-~~~~~v~gvD~S~~ml~~a~~~----------~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
.++||.=+|+|...+.. . ....+|+.-|+|+++++..+++ ++....|++ .-+....+.||+|=
T Consensus 51 ~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn--~ll~~~~~~fD~ID-- 126 (377)
T PF02005_consen 51 IRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDAN--VLLYSRQERFDVID-- 126 (377)
T ss_dssp EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HH--HHHCHSTT-EEEEE--
T ss_pred ceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHH--HHhhhccccCCEEE--
Confidence 37999999999743322 2 1236899999999988755442 345566763 22223567899884
Q ss_pred ccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 206 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 206 ~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+.-+..|..+|....+.+|.||++.++-..
T Consensus 127 --lDPfGSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 127 --LDPFGSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp --E--SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred --eCCCCCccHhHHHHHHHhhcCCEEEEeccc
Confidence 334457789999999999999999997433
No 295
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=74.72 E-value=7.6 Score=33.69 Aligned_cols=99 Identities=13% Similarity=0.102 Sum_probs=66.6
Q ss_pred hcCCceeeccCcCCccccCCCC------CCCeEEEEeCCHHHHHhcCC---CCcEEEeccCCCCCCC-------CCCCCe
Q 022305 136 KYYSEVFPPSNTPGVSHFPPGY------KQDRIVGMGMNEEELKRNPV---LTEYVVQDLNLNPKLP-------FEDNSF 199 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~~~------~~~~v~gvD~S~~ml~~a~~---~~~~~~~D~~~~~~lp-------f~~~~F 199 (299)
.....|++.|.--|.+.+..+. ...+|+++||+-..++.+.. .+.|+.++- .... .+++.-
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss---~dpai~eqi~~~~~~y~ 144 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSS---TDPAIAEQIRRLKNEYP 144 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCC---CCHHHHHHHHHHhcCCC
Confidence 3457899999875543332211 22689999999777654332 488888876 2221 122322
Q ss_pred eEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 200 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 200 D~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
-+-+|..+-|+.+.....|+-..+.|.-|-++++...+
T Consensus 145 kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~ 182 (237)
T COG3510 145 KIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSN 182 (237)
T ss_pred cEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEeccc
Confidence 45567777788877888888889999999999887655
No 296
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=74.61 E-value=1.6 Score=39.74 Aligned_cols=64 Identities=9% Similarity=0.017 Sum_probs=43.2
Q ss_pred ceeeccCcCCccccCCCCCCC-eEEEEeCCHHHHHhcCCC--CcEEEeccCCCCCCCCC--CCCeeEEEecc
Q 022305 140 EVFPPSNTPGVSHFPPGYKQD-RIVGMGMNEEELKRNPVL--TEYVVQDLNLNPKLPFE--DNSFDVITNVV 206 (299)
Q Consensus 140 ~vLDiGcG~G~~~~~~~~~~~-~v~gvD~S~~ml~~a~~~--~~~~~~D~~~~~~lpf~--~~~FD~Vis~~ 206 (299)
+++|+-||+|...+.....+. .+.++|+++.+++..+.+ ...+.+|+ .++... ...+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di---~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNKLIEGDI---TKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCCCccCcc---ccCchhhcCCCCCEEEeCC
Confidence 689999998875444333343 578899999998865554 23567787 555322 35699999653
No 297
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=74.41 E-value=8.3 Score=34.83 Aligned_cols=97 Identities=10% Similarity=0.107 Sum_probs=60.1
Q ss_pred CCceeeccCcCCc--cccCCCC----CCCeEEEEeCCHHHHHhcCC-----C----CcEEEeccCCCCCCC-CCCCCe-e
Q 022305 138 YSEVFPPSNTPGV--SHFPPGY----KQDRIVGMGMNEEELKRNPV-----L----TEYVVQDLNLNPKLP-FEDNSF-D 200 (299)
Q Consensus 138 ~~~vLDiGcG~G~--~~~~~~~----~~~~v~gvD~S~~ml~~a~~-----~----~~~~~~D~~~~~~lp-f~~~~F-D 200 (299)
...++|+|+|+.+ ..+...+ .-.+.+.+|+|...|....+ . +.-+++|.. ..+. .+...- =
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~--~~La~~~~~~~Rl 156 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYE--LALAELPRGGRRL 156 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHH--HHHhcccCCCeEE
Confidence 4578999998665 2222222 23689999999999864322 1 344556652 1121 122222 2
Q ss_pred EEEecccccccC--CHHHHHHHHHhhccCCcEEEEEec
Q 022305 201 VITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 201 ~Vis~~~l~~~~--d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.++...++-.+. +-..+|.++..+|+||-++++.+.
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 344456677763 346789999999999999999764
No 298
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=74.10 E-value=5.2 Score=36.48 Aligned_cols=88 Identities=22% Similarity=0.297 Sum_probs=52.6
Q ss_pred CCceeeccCc-CCcccc-CCCCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCC-----CCCCCCeeEEEeccccc
Q 022305 138 YSEVFPPSNT-PGVSHF-PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL-----PFEDNSFDVITNVVSVD 209 (299)
Q Consensus 138 ~~~vLDiGcG-~G~~~~-~~~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~l-----pf~~~~FD~Vis~~~l~ 209 (299)
..+||..|+| .|.... .....+.+|++++.+++..+.+++. ++.+..+.+ ... ....+.+|+|+.....
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~D~vid~~g~- 242 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLD--DSPKDKKAAGLGGGFDVIFDFVGT- 242 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCC--cCHHHHHHHhcCCCceEEEECCCC-
Confidence 3567777765 232111 1222467899999999988876542 233222220 111 1234579998865321
Q ss_pred ccCCHHHHHHHHHhhccCCcEEEE
Q 022305 210 YLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 210 ~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
...++++.+.|+++|.++.
T Consensus 243 -----~~~~~~~~~~l~~~G~~v~ 261 (338)
T cd08254 243 -----QPTFEDAQKAVKPGGRIVV 261 (338)
T ss_pred -----HHHHHHHHHHhhcCCEEEE
Confidence 3578899999999998775
No 299
>PRK10742 putative methyltransferase; Provisional
Probab=73.67 E-value=2.4 Score=38.08 Aligned_cols=34 Identities=15% Similarity=0.042 Sum_probs=28.7
Q ss_pred ceeeccCcCCccccCCCCCCCeEEEEeCCHHHHH
Q 022305 140 EVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELK 173 (299)
Q Consensus 140 ~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~ 173 (299)
+|||.-+|.|...+.....+++|+++|-|+.+..
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaa 124 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAA 124 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHH
Confidence 7999999999866666666889999999987754
No 300
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=73.67 E-value=6.2 Score=42.96 Aligned_cols=97 Identities=9% Similarity=0.042 Sum_probs=61.5
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcC--CCCcEEEeccCCCCCCC-CCCCCeeEEEeccccccc---
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNP--VLTEYVVQDLNLNPKLP-FEDNSFDVITNVVSVDYL--- 211 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~--~~~~~~~~D~~~~~~lp-f~~~~FD~Vis~~~l~~~--- 211 (299)
...+||+|.|+-...+...-+...|+.+|.-|-..-.+. -...|++.|. .... .....+|.+.|.++|---
T Consensus 823 ~~~~lDLGTGPE~RiLsliP~~~pvtmvD~RP~ae~m~~w~t~T~y~~~DY---l~~~~~~~~~~D~vtailSLGAAaA~ 899 (1289)
T PF06016_consen 823 PDHWLDLGTGPECRILSLIPPDTPVTMVDTRPFAEPMNCWNTQTQYIQADY---LSDAWWNGTPFDAVTAILSLGAAAAS 899 (1289)
T ss_dssp C-CEEEET--TT-CHHHCS-TTSEEEEEESS--SSSCCCCSTTEEEEES-T---TSCCGGCC---SEEEECTCHHHHHHH
T ss_pred cceEEEccCCccceeeeccCCCCceEEEecCCcccccchhhhcceeeeecc---ccceeEecCCCCEEEEEeeehhhhhc
Confidence 367999999987777766667789999999875432221 2378999997 3333 235679999999888744
Q ss_pred --CCHHHHHHHHHhhccCCc--EEEEEecC
Q 022305 212 --TKPIEVFKEMCQVLKPGG--LAIVSFSN 237 (299)
Q Consensus 212 --~d~~~~l~ei~rvLkpGG--~lii~~~~ 237 (299)
-+....++++.+.+++.| ++++....
T Consensus 900 a~~tl~~~l~~~l~~~~~~~~~~l~lQLNc 929 (1289)
T PF06016_consen 900 ANVTLDAGLQQFLSQCVQANVKRLWLQLNC 929 (1289)
T ss_dssp CT--HHHHHHHHHHHHHCTT-SEEEEE-B-
T ss_pred CCCcHHHHHHHHHHHHHhCCccEEEEEecC
Confidence 378899999999999988 78887543
No 301
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=71.76 E-value=15 Score=32.49 Aligned_cols=97 Identities=15% Similarity=0.004 Sum_probs=58.2
Q ss_pred HHhhhcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCC-CCCe
Q 022305 132 AALTKYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFE-DNSF 199 (299)
Q Consensus 132 ~~l~~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~-~~~F 199 (299)
..+-+...++.|+||--+. ..+....+...+++.|+++..++.|.++ ++...+|. -.+++ +..+
T Consensus 11 a~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg----l~~l~~~d~~ 86 (226)
T COG2384 11 ANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG----LAVLELEDEI 86 (226)
T ss_pred HHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC----ccccCccCCc
Confidence 3343444569999997664 3334445667899999999999877653 33444443 12343 3378
Q ss_pred eEEEecccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 200 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 200 D~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
|+|+....--. -....|++-..-|+.==.+|+.
T Consensus 87 d~ivIAGMGG~--lI~~ILee~~~~l~~~~rlILQ 119 (226)
T COG2384 87 DVIVIAGMGGT--LIREILEEGKEKLKGVERLILQ 119 (226)
T ss_pred CEEEEeCCcHH--HHHHHHHHhhhhhcCcceEEEC
Confidence 98775532211 2356667777766633356554
No 302
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=70.93 E-value=2 Score=36.94 Aligned_cols=29 Identities=41% Similarity=0.589 Sum_probs=22.3
Q ss_pred ccCCHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 210 YLTKPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 210 ~~~d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
|+.-....+.++.|+|||||.+++.....
T Consensus 31 y~~~~~~~~~~~~rvLk~~g~~~i~~~~~ 59 (231)
T PF01555_consen 31 YLEWMEEWLKECYRVLKPGGSIFIFIDDR 59 (231)
T ss_dssp HHHHHHHHHHHHHHHEEEEEEEEEEE-CC
T ss_pred HHHHHHHHHHHHHhhcCCCeeEEEEecch
Confidence 33446789999999999999988876543
No 303
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=70.35 E-value=5.2 Score=35.72 Aligned_cols=89 Identities=10% Similarity=0.073 Sum_probs=50.2
Q ss_pred hhhccccHHHHHHh---hhcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCCC----------CcEEEe-
Q 022305 121 RFVTHIDDPAIAAL---TKYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPVL----------TEYVVQ- 184 (299)
Q Consensus 121 ~~~~~l~~~~~~~l---~~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~----------~~~~~~- 184 (299)
.|+.|+.+.+..-- .....++||||-|.-. -.+-....+.+.+|.|+++..++.|+.. ++....
T Consensus 59 dYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk 138 (292)
T COG3129 59 DYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQK 138 (292)
T ss_pred HHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEecc
Confidence 46666644332211 1233478999987443 2223334567999999999998866541 333322
Q ss_pred ccCC-CCCCCCCCCCeeEEEeccccc
Q 022305 185 DLNL-NPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 185 D~~~-~~~lpf~~~~FD~Vis~~~l~ 209 (299)
|-.. -..+--.++.||+++|+--+|
T Consensus 139 ~~~~if~giig~nE~yd~tlCNPPFh 164 (292)
T COG3129 139 DSDAIFNGIIGKNERYDATLCNPPFH 164 (292)
T ss_pred CccccccccccccceeeeEecCCCcc
Confidence 2100 011112367899999996655
No 304
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=70.33 E-value=4.9 Score=37.87 Aligned_cols=97 Identities=13% Similarity=0.168 Sum_probs=69.0
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC-----------------CCcEEEeccCCCCCCCCC-CCC
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV-----------------LTEYVVQDLNLNPKLPFE-DNS 198 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~-----------------~~~~~~~D~~~~~~lpf~-~~~ 198 (299)
..+-|+|.=-|+|...++.+.-++-|+|.||+=.|+...+. ...+..+|. .+-|.. ...
T Consensus 208 pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~---sn~~~rsn~~ 284 (421)
T KOG2671|consen 208 PGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADF---SNPPLRSNLK 284 (421)
T ss_pred CCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecc---cCcchhhcce
Confidence 34568899889998888888888999999999988873322 156778888 555543 458
Q ss_pred eeEEEec------------------------ccccccCCH---------HHHHHHHHhhccCCcEEEEEec
Q 022305 199 FDVITNV------------------------VSVDYLTKP---------IEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 199 FD~Vis~------------------------~~l~~~~d~---------~~~l~ei~rvLkpGG~lii~~~ 236 (299)
||+|+|- ....|++.. ...|.=..|+|.-||++++=.|
T Consensus 285 fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 285 FDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred eeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 9999964 122344321 2456667899999999988554
No 305
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=69.92 E-value=3.6 Score=38.26 Aligned_cols=72 Identities=17% Similarity=0.232 Sum_probs=52.6
Q ss_pred CCCeEEEEeCCHHHHHhcCCC----CcEEEeccCCCCCCCCCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEE
Q 022305 158 KQDRIVGMGMNEEELKRNPVL----TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAI 232 (299)
Q Consensus 158 ~~~~v~gvD~S~~ml~~a~~~----~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~li 232 (299)
.+++|+-+|+|..-|.+-... ++...... .++...-...|+||..-.+.--..|.-+.+|+...+|||+.++
T Consensus 190 lgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~---~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 190 LGADVTILDLNIDRLRQLDDLFGGRVHTLYSTP---SNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred cCCeeEEEecCHHHHhhhhHhhCceeEEEEcCH---HHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEE
Confidence 468999999998877665442 33333333 3333334678999998777777889999999999999999764
No 306
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=69.75 E-value=9.9 Score=29.57 Aligned_cols=68 Identities=22% Similarity=0.368 Sum_probs=45.9
Q ss_pred CCeEEEEeCCHHHHHhcCCCC-cEEEeccCCCCCC-----C-CCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEE
Q 022305 159 QDRIVGMGMNEEELKRNPVLT-EYVVQDLNLNPKL-----P-FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLA 231 (299)
Q Consensus 159 ~~~v~gvD~S~~ml~~a~~~~-~~~~~D~~~~~~l-----p-f~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~l 231 (299)
+.+|+++|.++.-++.+++.- +.+ .|... .++ . ...+.+|+|+-... -...+++...+|+|||.+
T Consensus 14 G~~vi~~~~~~~k~~~~~~~Ga~~~-~~~~~-~~~~~~i~~~~~~~~~d~vid~~g------~~~~~~~~~~~l~~~G~~ 85 (130)
T PF00107_consen 14 GAKVIATDRSEEKLELAKELGADHV-IDYSD-DDFVEQIRELTGGRGVDVVIDCVG------SGDTLQEAIKLLRPGGRI 85 (130)
T ss_dssp TSEEEEEESSHHHHHHHHHTTESEE-EETTT-SSHHHHHHHHTTTSSEEEEEESSS------SHHHHHHHHHHEEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHhhccccc-ccccc-cccccccccccccccceEEEEecC------cHHHHHHHHHHhccCCEE
Confidence 489999999999888887752 222 22200 111 1 23357999986543 256889999999999977
Q ss_pred EEE
Q 022305 232 IVS 234 (299)
Q Consensus 232 ii~ 234 (299)
++-
T Consensus 86 v~v 88 (130)
T PF00107_consen 86 VVV 88 (130)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 307
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=69.21 E-value=9.6 Score=35.66 Aligned_cols=92 Identities=11% Similarity=0.108 Sum_probs=59.9
Q ss_pred cCCceeeccCc-CCc--cccCCCCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCC--CCC------CCCCCCeeEEEe
Q 022305 137 YYSEVFPPSNT-PGV--SHFPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLN--PKL------PFEDNSFDVITN 204 (299)
Q Consensus 137 ~~~~vLDiGcG-~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~--~~l------pf~~~~FD~Vis 204 (299)
...++|=+|+| .|. +..+..+...+|+.+|++++-|+.|++. .+.+..+.... ..+ .+.+..||+++.
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~d 248 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFD 248 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEE
Confidence 44689999998 453 4445566668999999999999999983 22222211100 000 123456898887
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
...+ +..++.....+|+||.+++.
T Consensus 249 CsG~------~~~~~aai~a~r~gGt~vlv 272 (354)
T KOG0024|consen 249 CSGA------EVTIRAAIKATRSGGTVVLV 272 (354)
T ss_pred ccCc------hHHHHHHHHHhccCCEEEEe
Confidence 6544 34566778899999987664
No 308
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=62.91 E-value=8 Score=36.65 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=38.9
Q ss_pred ccCcchhhccc----cHHHHHHhhhcC----CceeeccCcCCc------ccc----CCCCCCCeEEEEeCCHHHHHhcCC
Q 022305 116 FYETPRFVTHI----DDPAIAALTKYY----SEVFPPSNTPGV------SHF----PPGYKQDRIVGMGMNEEELKRNPV 177 (299)
Q Consensus 116 ~y~~~~~~~~l----~~~~~~~l~~~~----~~vLDiGcG~G~------~~~----~~~~~~~~v~gvD~S~~ml~~a~~ 177 (299)
|+..|.+-..+ ...+++.+.+.. -.++++|.|.|+ ..+ +..+...++.-|++|++..++-++
T Consensus 48 FiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~ 127 (370)
T COG1565 48 FITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKE 127 (370)
T ss_pred eeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHH
Confidence 77777544433 333444444322 369999999997 222 222346799999999998875443
No 309
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=61.80 E-value=11 Score=32.69 Aligned_cols=90 Identities=20% Similarity=0.202 Sum_probs=52.3
Q ss_pred cCCceeeccCcCCccccC---CCCCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCC-----CCCCCCeeEEEecccc
Q 022305 137 YYSEVFPPSNTPGVSHFP---PGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKL-----PFEDNSFDVITNVVSV 208 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~---~~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~l-----pf~~~~FD~Vis~~~l 208 (299)
...+||-.|+|+ .+... ....+.++++++.+++..+.+++.-.-...+... ... ....+.+|+|+....-
T Consensus 134 ~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~d~vi~~~~~ 211 (271)
T cd05188 134 PGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKE-EDLEEELRLTGGGGADVVIDAVGG 211 (271)
T ss_pred CCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCc-CCHHHHHHHhcCCCCCEEEECCCC
Confidence 346789889875 42222 1224579999999988777654421101112100 011 1124569999865432
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
...+..+.+.|+++|.++.-
T Consensus 212 ------~~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 212 ------PETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred ------HHHHHHHHHhcccCCEEEEE
Confidence 14567788899999987753
No 310
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=61.74 E-value=29 Score=29.08 Aligned_cols=95 Identities=18% Similarity=0.197 Sum_probs=58.8
Q ss_pred cCCceeeccCcCCccccCC-CCCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCC--CCCCCeeEEEecccccccC-
Q 022305 137 YYSEVFPPSNTPGVSHFPP-GYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLP--FEDNSFDVITNVVSVDYLT- 212 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~-~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lp--f~~~~FD~Vis~~~l~~~~- 212 (299)
...+|+-+||=+--..+.. ..+..+++-.|+...--....+ +|+.-|.+..+.+| + .++||+|++-== ++.
T Consensus 25 ~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~~~--~F~fyD~~~p~~~~~~l-~~~~d~vv~DPP--Fl~~ 99 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFGGD--EFVFYDYNEPEELPEEL-KGKFDVVVIDPP--FLSE 99 (162)
T ss_pred CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcCCc--ceEECCCCChhhhhhhc-CCCceEEEECCC--CCCH
Confidence 3467888877533222222 3356788999998877664433 58888886555555 3 578999997521 232
Q ss_pred CHH-HHHHHHHhhccCCcEEEEEec
Q 022305 213 KPI-EVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 213 d~~-~~l~ei~rvLkpGG~lii~~~ 236 (299)
+.. ++.+-+.-++|+++.+++.++
T Consensus 100 ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 100 ECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred HHHHHHHHHHHHHhCccceEEEecH
Confidence 222 344445555588888888655
No 311
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=61.21 E-value=17 Score=34.61 Aligned_cols=86 Identities=15% Similarity=0.023 Sum_probs=53.1
Q ss_pred CceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCCCCCCeeEEEecccccccCCHHHHH
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVF 218 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~~~l 218 (299)
...+|++||.+.+... ......+|....++..+-..+ ...-|+. ..-+++.+++|. ..++.|+++-..++
T Consensus 227 ~~~~~i~~~i~~gd~~----~~~~~~~d~~~~~~~~~~~~~-~~~~dl~--~~~s~~w~~~~~---~~~~~~~~~~~~~f 296 (364)
T KOG1269|consen 227 SEHVDILLEIEGGDAL----PAETFNTDVFDLLKSFGFEHL-KLEKDLA--LKSSFPWNTPLT---RDTITHWQDKSALF 296 (364)
T ss_pred cccccccCceeccccc----cceeccccHHHHHhhccchhh-hhccccc--CCCccccccccc---hhheeecccccHHH
Confidence 4678888875543211 123344444444433332211 1133442 112367788888 78888999999999
Q ss_pred HHHHhhccCCcEEEEE
Q 022305 219 KEMCQVLKPGGLAIVS 234 (299)
Q Consensus 219 ~ei~rvLkpGG~lii~ 234 (299)
......++|+|.+++.
T Consensus 297 ~~~~~~~~~~~~v~~~ 312 (364)
T KOG1269|consen 297 RGRVATLKPGGKVLIL 312 (364)
T ss_pred HhHhhccCcCceEEeh
Confidence 9999999999988775
No 312
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=60.71 E-value=16 Score=30.63 Aligned_cols=69 Identities=20% Similarity=0.252 Sum_probs=45.2
Q ss_pred CCCCCeeEEEecccccccC--------C-------HHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhh
Q 022305 194 FEDNSFDVITNVVSVDYLT--------K-------PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVM 258 (299)
Q Consensus 194 f~~~~FD~Vis~~~l~~~~--------d-------~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (299)
...+.||.|+-++ .|.. + ...+|+.+.++|+++|.+.|+...... +..|..
T Consensus 71 ~~~~~FDrIiFNF--PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p----y~~W~i-------- 136 (166)
T PF10354_consen 71 LKNQRFDRIIFNF--PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP----YDSWNI-------- 136 (166)
T ss_pred ccCCcCCEEEEeC--CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC----CccccH--------
Confidence 4668899999773 4443 0 247889999999999999998655332 122322
Q ss_pred hHHHHHHHhCCCCCCeeeecC
Q 022305 259 IVGAYFHYAGGYEPPQAVDIS 279 (299)
Q Consensus 259 ~~~~~~~~~aGF~~v~~~~~~ 279 (299)
. .+.+.+||..++...-.
T Consensus 137 --~-~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 137 --E-ELAAEAGLVLVRKVPFD 154 (166)
T ss_pred --H-HHHHhcCCEEEEEecCC
Confidence 1 34455788877665544
No 313
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=60.02 E-value=18 Score=33.59 Aligned_cols=50 Identities=18% Similarity=0.168 Sum_probs=32.3
Q ss_pred HHHHHHhh-hcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC
Q 022305 128 DPAIAALT-KYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV 177 (299)
Q Consensus 128 ~~~~~~l~-~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~ 177 (299)
.++++.|. +.-..++|.--|.|. ..++...++++++|+|-.+.+++.+++
T Consensus 10 ~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~ 62 (310)
T PF01795_consen 10 KEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKE 62 (310)
T ss_dssp HHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHC
T ss_pred HHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHH
Confidence 45566664 344578897667663 555656677999999999999988764
No 314
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=59.90 E-value=12 Score=35.59 Aligned_cols=101 Identities=16% Similarity=0.146 Sum_probs=56.5
Q ss_pred cCCceeeccCcCCcccc--CCCCC----CCeEEEEeCCHHHHHh----cCC----CCcEEEeccCCCCCC------CCCC
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGYK----QDRIVGMGMNEEELKR----NPV----LTEYVVQDLNLNPKL------PFED 196 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~~----~~~v~gvD~S~~ml~~----a~~----~~~~~~~D~~~~~~l------pf~~ 196 (299)
.-.+|||.+..+|.... ..... ...|++-|.++.=+.. ... +..+...|+...... +.+.
T Consensus 155 p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~ 234 (375)
T KOG2198|consen 155 PGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQ 234 (375)
T ss_pred CCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhhh
Confidence 45689999998886332 11111 3479999998753331 111 122233333111111 2334
Q ss_pred CCeeEEEec-----c-cccccCCH-----------------HHHHHHHHhhccCCcEEEEEecC
Q 022305 197 NSFDVITNV-----V-SVDYLTKP-----------------IEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 197 ~~FD~Vis~-----~-~l~~~~d~-----------------~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
..||-|+|- . ++.+.++. .+.|..-.+.||+||.++-++-.
T Consensus 235 ~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS 298 (375)
T KOG2198|consen 235 LKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS 298 (375)
T ss_pred hhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 579988842 1 22222221 25788889999999999988654
No 315
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=59.33 E-value=21 Score=33.04 Aligned_cols=74 Identities=15% Similarity=0.178 Sum_probs=53.8
Q ss_pred HhcCCCCcEEEeccCCCCCCC--CCCCCeeEEEecccccccCC--HHHHHHHHHhhccCCcEEEEEecC------cchHH
Q 022305 173 KRNPVLTEYVVQDLNLNPKLP--FEDNSFDVITNVVSVDYLTK--PIEVFKEMCQVLKPGGLAIVSFSN------RCFWT 242 (299)
Q Consensus 173 ~~a~~~~~~~~~D~~~~~~lp--f~~~~FD~Vis~~~l~~~~d--~~~~l~ei~rvLkpGG~lii~~~~------~~~~~ 242 (299)
..+-+++..+.+|+ .++- -+.+..|.++...+-.|++| ...++.++.|-+.||.++|+-..- .....
T Consensus 303 r~n~~RV~ihha~~---iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRtaae~s~~~gR~s~ 379 (414)
T COG5379 303 RQNLRRVAIHHADI---IELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRTAAEVSRLPGRLST 379 (414)
T ss_pred HhhhhheeeecccH---HHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEecccceecCCCCCcH
Confidence 33444578888888 3332 35688999999999999974 678999999999999999996432 23344
Q ss_pred HHHHhhh
Q 022305 243 KAISIWT 249 (299)
Q Consensus 243 ~~~~~~~ 249 (299)
...+.|.
T Consensus 380 ~irdqw~ 386 (414)
T COG5379 380 QIRDQWA 386 (414)
T ss_pred HHHHHHH
Confidence 5556665
No 316
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=58.48 E-value=18 Score=33.09 Aligned_cols=81 Identities=10% Similarity=0.021 Sum_probs=49.0
Q ss_pred CCceeeccCcCCccccC---CCCCCC-eEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCCCCCCeeEEEecccccccCC
Q 022305 138 YSEVFPPSNTPGVSHFP---PGYKQD-RIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 213 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~---~~~~~~-~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d 213 (299)
..++|=+||| |.+.+. ....++ .++.+|.+++.++.+... ...|. ... ..+.||+|+-...-
T Consensus 145 ~~~vlV~G~G-~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---~~i~~---~~~--~~~g~Dvvid~~G~----- 210 (308)
T TIGR01202 145 VLPDLIVGHG-TLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---EVLDP---EKD--PRRDYRAIYDASGD----- 210 (308)
T ss_pred CCcEEEECCC-HHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---cccCh---hhc--cCCCCCEEEECCCC-----
Confidence 3567877876 332322 122355 477889999888877642 11222 111 23468988865331
Q ss_pred HHHHHHHHHhhccCCcEEEE
Q 022305 214 PIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 214 ~~~~l~ei~rvLkpGG~lii 233 (299)
...+.++.+.|++||.+++
T Consensus 211 -~~~~~~~~~~l~~~G~iv~ 229 (308)
T TIGR01202 211 -PSLIDTLVRRLAKGGEIVL 229 (308)
T ss_pred -HHHHHHHHHhhhcCcEEEE
Confidence 3467888899999997764
No 317
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.42 E-value=7.1 Score=32.46 Aligned_cols=101 Identities=14% Similarity=0.092 Sum_probs=57.9
Q ss_pred HHHhhh-cCCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcC---------CCCcEEEeccCCCCCCCCCCCCe
Q 022305 131 IAALTK-YYSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNP---------VLTEYVVQDLNLNPKLPFEDNSF 199 (299)
Q Consensus 131 ~~~l~~-~~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~---------~~~~~~~~D~~~~~~lpf~~~~F 199 (299)
+..+.. ...+.+|+|+|.|..-+....-+ ..-+|+++++-.+..++ +.+.|..-|+ -+..+.|-.+
T Consensus 65 LSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rkdl---wK~dl~dy~~ 141 (199)
T KOG4058|consen 65 LSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDL---WKVDLRDYRN 141 (199)
T ss_pred HHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhh---hhccccccce
Confidence 444433 44799999999997555544333 47899999998877543 2366777777 5555545444
Q ss_pred eEEEecccccccCCHHHHHHHHHhhccCCcEEE-EEecCcc
Q 022305 200 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAI-VSFSNRC 239 (299)
Q Consensus 200 D~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~li-i~~~~~~ 239 (299)
=+|+-.. .-++|++.-|. .-|..+-.++ .-||-+.
T Consensus 142 vviFgae--s~m~dLe~KL~---~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 142 VVIFGAE--SVMPDLEDKLR---TELPANTRVVACRFPLPT 177 (199)
T ss_pred EEEeehH--HHHhhhHHHHH---hhCcCCCeEEEEecCCCc
Confidence 4444333 33445443332 2233444443 3455544
No 318
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=57.76 E-value=5.4 Score=37.05 Aligned_cols=55 Identities=27% Similarity=0.396 Sum_probs=39.2
Q ss_pred CcEEEeccCCCCCCCCCC-------CCeeEEEeccccccc-----CCHHHHHHHHHhhccCCcEEEEEec
Q 022305 179 TEYVVQDLNLNPKLPFED-------NSFDVITNVVSVDYL-----TKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 179 ~~~~~~D~~~~~~lpf~~-------~~FD~Vis~~~l~~~-----~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
++|.+.|+ -.+..++ .+-|+|+..+++.-+ ..-.++|..+..+++||-+++|..+
T Consensus 177 ~~F~~~Dv---L~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 177 VSFTQQDV---LSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred eeEEeccc---ccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 67888888 4443321 357888877776543 4556899999999999997777543
No 319
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=55.48 E-value=19 Score=33.25 Aligned_cols=83 Identities=11% Similarity=0.016 Sum_probs=50.5
Q ss_pred CCceeeccCcCCccccC---CCCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCCCCCCCCeeEEEecccccccCC
Q 022305 138 YSEVFPPSNTPGVSHFP---PGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 213 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~---~~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d 213 (299)
..+||=.|+| |.+.+. ....+.+++++|.+++-++.+++. .+.+ .|. ... ..+.+|+++-....
T Consensus 166 g~~VlV~G~g-~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~v-i~~---~~~--~~~~~d~~i~~~~~----- 233 (329)
T TIGR02822 166 GGRLGLYGFG-GSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASA-GGA---YDT--PPEPLDAAILFAPA----- 233 (329)
T ss_pred CCEEEEEcCC-HHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCcee-ccc---ccc--CcccceEEEECCCc-----
Confidence 4578888875 333222 122467899999999888877764 2222 221 111 12458876543322
Q ss_pred HHHHHHHHHhhccCCcEEEE
Q 022305 214 PIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 214 ~~~~l~ei~rvLkpGG~lii 233 (299)
...+.+..+.|++||.+++
T Consensus 234 -~~~~~~~~~~l~~~G~~v~ 252 (329)
T TIGR02822 234 -GGLVPPALEALDRGGVLAV 252 (329)
T ss_pred -HHHHHHHHHhhCCCcEEEE
Confidence 2478889999999997765
No 320
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=55.24 E-value=29 Score=33.07 Aligned_cols=105 Identities=17% Similarity=0.215 Sum_probs=58.2
Q ss_pred HHHHhhh-cCCceeeccCcCCc------cccCC---CCCCCeEEEEeC----CHHHHHhcCCC-----------CcEEEe
Q 022305 130 AIAALTK-YYSEVFPPSNTPGV------SHFPP---GYKQDRIVGMGM----NEEELKRNPVL-----------TEYVVQ 184 (299)
Q Consensus 130 ~~~~l~~-~~~~vLDiGcG~G~------~~~~~---~~~~~~v~gvD~----S~~ml~~a~~~-----------~~~~~~ 184 (299)
+++.+.. ..-.|+|+|.|.|. ..+.. ..|.-++|||+. +..-++...++ .+|...
T Consensus 102 IleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v 181 (374)
T PF03514_consen 102 ILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPV 181 (374)
T ss_pred HHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEec
Confidence 3444432 33468999999886 11222 224459999999 66666544331 333332
Q ss_pred ccCCCCCC-----CCCCCCeeEEEecccccccC-------CHHHHHHHHHhhccCCcEEEEE
Q 022305 185 DLNLNPKL-----PFEDNSFDVITNVVSVDYLT-------KPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 185 D~~~~~~l-----pf~~~~FD~Vis~~~l~~~~-------d~~~~l~ei~rvLkpGG~lii~ 234 (299)
-....+.+ ...++-.=+|-|.+.|||+. ++...+=...|-|+|.-.++.+
T Consensus 182 ~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 182 VVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred ccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 11000222 22333333444677789885 2444555667789999777665
No 321
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=54.79 E-value=4 Score=36.48 Aligned_cols=38 Identities=13% Similarity=0.037 Sum_probs=25.2
Q ss_pred CceeeccCcCCc------cccCCC----CCCCeEEEEeCCHHHHHhcC
Q 022305 139 SEVFPPSNTPGV------SHFPPG----YKQDRIVGMGMNEEELKRNP 176 (299)
Q Consensus 139 ~~vLDiGcG~G~------~~~~~~----~~~~~v~gvD~S~~ml~~a~ 176 (299)
-+|+++|.|.|+ ..+... +...+++-||+|+.+.+..+
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~ 67 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQK 67 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHH
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHH
Confidence 489999999997 222222 23479999999998876433
No 322
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=53.30 E-value=15 Score=34.10 Aligned_cols=86 Identities=14% Similarity=0.184 Sum_probs=50.9
Q ss_pred CCceeeccCcCCcccc----CCC-CCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCCCCCCeeEEEecccccccC
Q 022305 138 YSEVFPPSNTPGVSHF----PPG-YKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 212 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~----~~~-~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~ 212 (299)
-++||=.||| |.+.+ ... ....+|+++|.+++-++.+++. .... .. +.+. ++..+|+|+-.-.- .
T Consensus 164 g~~VlV~G~G-~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~-~~~~-~~---~~~~-~~~g~d~viD~~G~---~ 233 (341)
T cd08237 164 RNVIGVWGDG-NLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFA-DETY-LI---DDIP-EDLAVDHAFECVGG---R 233 (341)
T ss_pred CCEEEEECCC-HHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhc-Ccee-eh---hhhh-hccCCcEEEECCCC---C
Confidence 4678888986 33332 222 2346899999999888777641 1111 11 1111 11248988854321 0
Q ss_pred CHHHHHHHHHhhccCCcEEEE
Q 022305 213 KPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 213 d~~~~l~ei~rvLkpGG~lii 233 (299)
.....+.+..++|++||.+++
T Consensus 234 ~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 234 GSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred ccHHHHHHHHHhCcCCcEEEE
Confidence 124578889999999997764
No 323
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=53.09 E-value=44 Score=29.93 Aligned_cols=96 Identities=20% Similarity=0.137 Sum_probs=50.5
Q ss_pred CceeeccCcCCcc-ccCCCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCCCCC-CCCeeEEEec--cc
Q 022305 139 SEVFPPSNTPGVS-HFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFE-DNSFDVITNV--VS 207 (299)
Q Consensus 139 ~~vLDiGcG~G~~-~~~~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~lpf~-~~~FD~Vis~--~~ 207 (299)
++||-+|=.--++ .+.......+|+.+|+.+.+++.-++ .++....|+. ..+|-+ .++||++++- ++
T Consensus 46 k~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR--~~LP~~~~~~fD~f~TDPPyT 123 (243)
T PF01861_consen 46 KRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLR--DPLPEELRGKFDVFFTDPPYT 123 (243)
T ss_dssp -EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TT--S---TTTSS-BSEEEE---SS
T ss_pred CEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEeccc--ccCCHHHhcCCCEEEeCCCCC
Confidence 5788887542221 11112245799999999999975332 2778888884 344421 4789999975 22
Q ss_pred ccccCCHHHHHHHHHhhccCCc-EEEEEecCcc
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGG-LAIVSFSNRC 239 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG-~lii~~~~~~ 239 (299)
+ +-..-++..-...||..| ..++++....
T Consensus 124 ~---~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~ 153 (243)
T PF01861_consen 124 P---EGLKLFLSRGIEALKGEGCAGYFGFTHKE 153 (243)
T ss_dssp H---HHHHHHHHHHHHTB-STT-EEEEEE-TTT
T ss_pred H---HHHHHHHHHHHHHhCCCCceEEEEEecCc
Confidence 2 234567888888998766 7777776643
No 324
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=53.08 E-value=12 Score=34.88 Aligned_cols=86 Identities=13% Similarity=0.112 Sum_probs=49.7
Q ss_pred CCceeeccCcCCccccC---CCCCCCeEEEEeC---CHHHHHhcCCC-CcEEEeccCCCCCC--CCCCCCeeEEEecccc
Q 022305 138 YSEVFPPSNTPGVSHFP---PGYKQDRIVGMGM---NEEELKRNPVL-TEYVVQDLNLNPKL--PFEDNSFDVITNVVSV 208 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~---~~~~~~~v~gvD~---S~~ml~~a~~~-~~~~~~D~~~~~~l--pf~~~~FD~Vis~~~l 208 (299)
..+||=.|+| +.+.+. ....+.+|++++. ++.-++.+++. .+++ +... +.+ ....+.||+|+-...
T Consensus 173 g~~vlI~G~G-~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~-~~~~~~~~~~~~d~vid~~g- 247 (355)
T cd08230 173 PRRALVLGAG-PIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV--NSSK-TPVAEVKLVGEFDLIIEATG- 247 (355)
T ss_pred CCEEEEECCC-HHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe--cCCc-cchhhhhhcCCCCEEEECcC-
Confidence 4578888875 333332 1224568999986 66666666543 3332 2210 110 011246898886543
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEE
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
. ...+.+..++|++||.+++
T Consensus 248 ----~-~~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 248 ----V-PPLAFEALPALAPNGVVIL 267 (355)
T ss_pred ----C-HHHHHHHHHHccCCcEEEE
Confidence 1 2367889999999997654
No 325
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=51.64 E-value=13 Score=34.15 Aligned_cols=88 Identities=14% Similarity=0.222 Sum_probs=49.8
Q ss_pred CCceeeccCcCCccccC---CCCCCC-eEEEEeCCHHHHHhcCCC-CcEEEeccCC--CCCCCCCCCCeeEEEecccccc
Q 022305 138 YSEVFPPSNTPGVSHFP---PGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNL--NPKLPFEDNSFDVITNVVSVDY 210 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~---~~~~~~-~v~gvD~S~~ml~~a~~~-~~~~~~D~~~--~~~lpf~~~~FD~Vis~~~l~~ 210 (299)
..+||-.||| +.+... ....+. ++++++.++...+.+++. .+. ..|... ...+....+.+|+|+.....
T Consensus 166 ~~~VLI~g~g-~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~-vi~~~~~~~~~~~~~~~~vd~vld~~g~-- 241 (339)
T cd08232 166 GKRVLVTGAG-PIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADE-TVNLARDPLAAYAADKGDFDVVFEASGA-- 241 (339)
T ss_pred CCEEEEECCC-HHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCE-EEcCCchhhhhhhccCCCccEEEECCCC--
Confidence 3567777765 332222 112355 799999998887755442 111 112100 01122122459999865432
Q ss_pred cCCHHHHHHHHHhhccCCcEEEE
Q 022305 211 LTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 211 ~~d~~~~l~ei~rvLkpGG~lii 233 (299)
...++++.+.|+++|.++.
T Consensus 242 ----~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 242 ----PAALASALRVVRPGGTVVQ 260 (339)
T ss_pred ----HHHHHHHHHHHhcCCEEEE
Confidence 3457889999999998764
No 326
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=51.25 E-value=1.1e+02 Score=28.19 Aligned_cols=110 Identities=16% Similarity=0.181 Sum_probs=73.0
Q ss_pred ccHHHHHHhhhcCCceeeccCcCCccccCCCCC-CCeEEEEeCCHHHHHhcCC----------CCcEEEeccCCCCCCC-
Q 022305 126 IDDPAIAALTKYYSEVFPPSNTPGVSHFPPGYK-QDRIVGMGMNEEELKRNPV----------LTEYVVQDLNLNPKLP- 193 (299)
Q Consensus 126 l~~~~~~~l~~~~~~vLDiGcG~G~~~~~~~~~-~~~v~gvD~S~~ml~~a~~----------~~~~~~~D~~~~~~lp- 193 (299)
+++.+...+.+....|+-+|||-=+..+....+ +.+|+-+|.=+.+--+.+. ..+++..|+.. +.++
T Consensus 81 fD~~~~~~~~~g~~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~-~dw~~ 159 (297)
T COG3315 81 FDDFVRAALDAGIRQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLRE-DDWPQ 159 (297)
T ss_pred HHHHHHHHHHhcccEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccc-cchHH
Confidence 344455555555678999999866656655555 4788888875544322211 26678888831 1111
Q ss_pred ------CCCCCeeEEEecccccccC--CHHHHHHHHHhhccCCcEEEEEec
Q 022305 194 ------FEDNSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 194 ------f~~~~FD~Vis~~~l~~~~--d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
|..+.-=++++-.++.|++ ...++|..|...+.||-.+++...
T Consensus 160 ~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 160 ALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred HHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 3344445788888999996 446799999999999999988875
No 327
>PHA03411 putative methyltransferase; Provisional
Probab=46.80 E-value=24 Score=32.30 Aligned_cols=52 Identities=13% Similarity=0.124 Sum_probs=39.9
Q ss_pred chhhccccHHHHHHhhhcCCceeeccCcCCccccCCCCCC----CeEEEEeCCHHH
Q 022305 120 PRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSHFPPGYKQ----DRIVGMGMNEEE 171 (299)
Q Consensus 120 ~~~~~~l~~~~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~----~~v~gvD~S~~m 171 (299)
|-|..-+.......+.+...-+++.|||--++.+...+.+ ++|+.+|..+.-
T Consensus 187 ~~y~~sl~~~~y~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PHA03411 187 PYYDGTMKSNKYLKWSKQTGLVTYAGCGIDTSIYRDEWHSTNVLTEVVEVRYYEKE 242 (279)
T ss_pred ccccccCCHHHHHHHHHhcCcEecCCCCcccceehhhccCCCccceEEEEEecccc
Confidence 4555666666677777767889999999888888777755 689999998754
No 328
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=46.10 E-value=25 Score=32.63 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHhhccCCcEE-EEEecC
Q 022305 212 TKPIEVFKEMCQVLKPGGLA-IVSFSN 237 (299)
Q Consensus 212 ~d~~~~l~ei~rvLkpGG~l-ii~~~~ 237 (299)
..++.+|..+.++|||||.+ ||+|..
T Consensus 221 ~~L~~~L~~a~~~L~~gGRl~VIsFHS 247 (314)
T COG0275 221 EELEEALEAALDLLKPGGRLAVISFHS 247 (314)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEecc
Confidence 45688999999999999955 566664
No 329
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=42.71 E-value=27 Score=33.86 Aligned_cols=83 Identities=10% Similarity=0.081 Sum_probs=49.8
Q ss_pred CCceeeccCc-CCcccc-CCCCCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCCCCCCeeEEEecccccccCCHH
Q 022305 138 YSEVFPPSNT-PGVSHF-PPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPI 215 (299)
Q Consensus 138 ~~~vLDiGcG-~G~~~~-~~~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~ 215 (299)
.++|+=+|+| .|.... .....+++|+.+|.++.-++.|... -+...+. ++. . ..+|+|+..-. . .
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~-G~~~~~~---~e~-v--~~aDVVI~atG-----~-~ 268 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME-GYEVMTM---EEA-V--KEGDIFVTTTG-----N-K 268 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc-CCEEccH---HHH-H--cCCCEEEECCC-----C-H
Confidence 4678888988 453222 1223467899999999877776653 1111122 111 1 34799986532 2 3
Q ss_pred HHHH-HHHhhccCCcEEEE
Q 022305 216 EVFK-EMCQVLKPGGLAIV 233 (299)
Q Consensus 216 ~~l~-ei~rvLkpGG~lii 233 (299)
.++. +..+.+|+||.++.
T Consensus 269 ~~i~~~~l~~mk~Ggilvn 287 (413)
T cd00401 269 DIITGEHFEQMKDGAIVCN 287 (413)
T ss_pred HHHHHHHHhcCCCCcEEEE
Confidence 3455 45889999997755
No 330
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=42.68 E-value=18 Score=33.56 Aligned_cols=25 Identities=32% Similarity=0.483 Sum_probs=19.9
Q ss_pred CHHHHHHHHHhhccCCcEE-EEEecC
Q 022305 213 KPIEVFKEMCQVLKPGGLA-IVSFSN 237 (299)
Q Consensus 213 d~~~~l~ei~rvLkpGG~l-ii~~~~ 237 (299)
.+..+|..+..+|||||.+ ||+|..
T Consensus 218 ~L~~~L~~~~~~L~~gGrl~VISfHS 243 (305)
T TIGR00006 218 ELEEALQFAPNLLAPGGRLSIISFHS 243 (305)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 4578899999999999955 566664
No 331
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=41.83 E-value=50 Score=30.72 Aligned_cols=87 Identities=13% Similarity=0.157 Sum_probs=49.7
Q ss_pred CCceeeccCcCCccccC---CCCCCC-eEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCC-----C-CCCCCeeEEEecc
Q 022305 138 YSEVFPPSNTPGVSHFP---PGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL-----P-FEDNSFDVITNVV 206 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~---~~~~~~-~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~l-----p-f~~~~FD~Vis~~ 206 (299)
..+||=.|+| +.+.+. ....+. +|+++|.+++-++.+++. .+.+ .|... +.. . .....+|+|+-..
T Consensus 177 g~~VlV~G~g-~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~-i~~~~-~~~~~~i~~~~~~~g~d~vid~~ 253 (358)
T TIGR03451 177 GDSVAVIGCG-GVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHT-VNSSG-TDPVEAIRALTGGFGADVVIDAV 253 (358)
T ss_pred CCEEEEECCC-HHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceE-EcCCC-cCHHHHHHHHhCCCCCCEEEECC
Confidence 4577777875 332222 122355 599999999888877653 2211 12100 111 0 1223589887543
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEE
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
. . ...+.+..+.|++||.+++
T Consensus 254 g-----~-~~~~~~~~~~~~~~G~iv~ 274 (358)
T TIGR03451 254 G-----R-PETYKQAFYARDLAGTVVL 274 (358)
T ss_pred C-----C-HHHHHHHHHHhccCCEEEE
Confidence 2 2 2467788899999998765
No 332
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=38.08 E-value=12 Score=36.97 Aligned_cols=94 Identities=21% Similarity=0.273 Sum_probs=62.8
Q ss_pred CCceeeccCcCCccccC--CCCCC-CeEEEEeCCHHHHHhcCCC---------CcEEEeccCCC-CCCCCCCCCeeEEEe
Q 022305 138 YSEVFPPSNTPGVSHFP--PGYKQ-DRIVGMGMNEEELKRNPVL---------TEYVVQDLNLN-PKLPFEDNSFDVITN 204 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~--~~~~~-~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~-~~lpf~~~~FD~Vis 204 (299)
..+|||.=|++|...+. ...++ .+|++-|.++..++..+++ ++-...|++.. ..-+-.+..||+|-
T Consensus 110 ~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID- 188 (525)
T KOG1253|consen 110 SLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID- 188 (525)
T ss_pred cchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe-
Confidence 35789988888874443 23333 5899999999999855544 33344555321 11133457788874
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
|.-+..+..+|....+.++.||++.++-
T Consensus 189 ---LDPyGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 189 ---LDPYGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ---cCCCCCccHHHHHHHHHhhcCCEEEEEe
Confidence 2333456788999999999999999874
No 333
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=37.36 E-value=78 Score=27.10 Aligned_cols=42 Identities=17% Similarity=0.167 Sum_probs=32.1
Q ss_pred CCCCCeeEEEecccccccC------------CHHHHHHHHHhhccCCcEEEEEe
Q 022305 194 FEDNSFDVITNVVSVDYLT------------KPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 194 f~~~~FD~Vis~~~l~~~~------------d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
...+..|+|+.+.+|+-+. ++++.+..+..+|+|+-.+|..+
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~t 99 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNT 99 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEec
Confidence 4567789999998887552 45677778888888998887754
No 334
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=36.76 E-value=41 Score=30.62 Aligned_cols=95 Identities=13% Similarity=0.141 Sum_probs=46.5
Q ss_pred CCceeeccCc------CCccccCCCC-CCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCCCCCCeeEEEeccc---
Q 022305 138 YSEVFPPSNT------PGVSHFPPGY-KQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVS--- 207 (299)
Q Consensus 138 ~~~vLDiGcG------~G~~~~~~~~-~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~--- 207 (299)
-.+||.+|.| +|+.-+..-+ .++-++-.|+.+-. .+-...+.+|. ..+.. +..||+|+|-.-
T Consensus 62 nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v----SDa~~~~~~Dc---~t~~~-~~k~DlIiSDmYd~~ 133 (299)
T PF06460_consen 62 NMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV----SDADQSIVGDC---RTYMP-PDKFDLIISDMYDGR 133 (299)
T ss_dssp T-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-----SSSEEEES-G---GGEEE-SS-EEEEEE----TT
T ss_pred CcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc----cccCCceeccc---cccCC-CCcccEEEEeccccc
Confidence 3689999987 3332222222 35678888887632 22234567776 44443 567999998643
Q ss_pred cccc----CCHHH----HHHHHHhhccCCcEEEEEecCcch
Q 022305 208 VDYL----TKPIE----VFKEMCQVLKPGGLAIVSFSNRCF 240 (299)
Q Consensus 208 l~~~----~d~~~----~l~ei~rvLkpGG~lii~~~~~~~ 240 (299)
..++ ...+. +..-+..-|+-||.+.|-+....+
T Consensus 134 ~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw 174 (299)
T PF06460_consen 134 TKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSW 174 (299)
T ss_dssp S-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS-
T ss_pred ccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccc
Confidence 1122 11222 334456778899999887655443
No 335
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=36.75 E-value=70 Score=29.73 Aligned_cols=88 Identities=15% Similarity=0.167 Sum_probs=51.4
Q ss_pred CCceeeccCcCCccccC---CCCCCCeEEEEeCCHHHHHhcC-CC-CcEEEeccCCCCCC-----CCCCCCeeEEEeccc
Q 022305 138 YSEVFPPSNTPGVSHFP---PGYKQDRIVGMGMNEEELKRNP-VL-TEYVVQDLNLNPKL-----PFEDNSFDVITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~---~~~~~~~v~gvD~S~~ml~~a~-~~-~~~~~~D~~~~~~l-----pf~~~~FD~Vis~~~ 207 (299)
..+||=.|++.|.+.+. .+..+.++++++.+++-++.++ +. .+.+. |......+ ....+.+|+|+-...
T Consensus 159 g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi-~~~~~~~~~~~i~~~~~~gvD~v~d~vG 237 (348)
T PLN03154 159 GDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAF-NYKEEPDLDAALKRYFPEGIDIYFDNVG 237 (348)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEE-ECCCcccHHHHHHHHCCCCcEEEEECCC
Confidence 45788888755554442 2234678999999988777654 22 22221 11000011 111246899885532
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEE
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
...+.+..+.|++||.+++
T Consensus 238 -------~~~~~~~~~~l~~~G~iv~ 256 (348)
T PLN03154 238 -------GDMLDAALLNMKIHGRIAV 256 (348)
T ss_pred -------HHHHHHHHHHhccCCEEEE
Confidence 2467888999999998764
No 336
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=36.40 E-value=26 Score=32.36 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=19.7
Q ss_pred CHHHHHHHHHhhccCCcEE-EEEecC
Q 022305 213 KPIEVFKEMCQVLKPGGLA-IVSFSN 237 (299)
Q Consensus 213 d~~~~l~ei~rvLkpGG~l-ii~~~~ 237 (299)
.+..+|..+..+|||||.+ ||+|..
T Consensus 214 ~L~~~L~~~~~~L~~gGrl~visfHS 239 (296)
T PRK00050 214 ELERALEAALDLLKPGGRLAVISFHS 239 (296)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 4578899999999999965 566654
No 337
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=36.39 E-value=18 Score=34.66 Aligned_cols=40 Identities=13% Similarity=0.032 Sum_probs=28.5
Q ss_pred CCceeeccCcCCc-cccCCCCCCCeEEEEeCCHHHHHhcCC
Q 022305 138 YSEVFPPSNTPGV-SHFPPGYKQDRIVGMGMNEEELKRNPV 177 (299)
Q Consensus 138 ~~~vLDiGcG~G~-~~~~~~~~~~~v~gvD~S~~ml~~a~~ 177 (299)
...++|+|.|.|- +.+.....+..|.+||-|....++|++
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 4679999999884 222333346899999999877665543
No 338
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=35.85 E-value=38 Score=30.32 Aligned_cols=68 Identities=21% Similarity=0.342 Sum_probs=40.0
Q ss_pred CCCeEEEEeCCHHHHHhcCCC--CcEEEeccCCCCCCCCCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 158 KQDRIVGMGMNEEELKRNPVL--TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 158 ~~~~v~gvD~S~~ml~~a~~~--~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
+..+|+|.|.++..++.+.+. +.-...+. +.+ ..+|+|+..--+ .....+++++...+++|+ +++++
T Consensus 10 ~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~---~~~----~~~DlvvlavP~---~~~~~~l~~~~~~~~~~~-iv~Dv 78 (258)
T PF02153_consen 10 PDVEVYGYDRDPETLEAALELGIIDEASTDI---EAV----EDADLVVLAVPV---SAIEDVLEEIAPYLKPGA-IVTDV 78 (258)
T ss_dssp TTSEEEEE-SSHHHHHHHHHTTSSSEEESHH---HHG----GCCSEEEE-S-H---HHHHHHHHHHHCGS-TTS-EEEE-
T ss_pred CCeEEEEEeCCHHHHHHHHHCCCeeeccCCH---hHh----cCCCEEEEcCCH---HHHHHHHHHhhhhcCCCc-EEEEe
Confidence 357999999999999988543 22222212 111 336998876433 345778888888888875 44544
Q ss_pred c
Q 022305 236 S 236 (299)
Q Consensus 236 ~ 236 (299)
.
T Consensus 79 ~ 79 (258)
T PF02153_consen 79 G 79 (258)
T ss_dssp -
T ss_pred C
Confidence 3
No 339
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=35.73 E-value=31 Score=33.58 Aligned_cols=42 Identities=24% Similarity=0.123 Sum_probs=35.7
Q ss_pred hhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhc
Q 022305 134 LTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRN 175 (299)
Q Consensus 134 l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a 175 (299)
+.+....|-|+-||.|-..++....+++|++-|++++|++.-
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~L 287 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWL 287 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHH
Confidence 444556788999999998888888899999999999999853
No 340
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=35.18 E-value=26 Score=32.38 Aligned_cols=97 Identities=12% Similarity=-0.062 Sum_probs=52.5
Q ss_pred CCceeeccCc-CCcccc--CCCCCCCeEEEEeCCHHHH-HhcCCC-CcEEEeccCCCCCCCCCCCCeeEEEecccccccC
Q 022305 138 YSEVFPPSNT-PGVSHF--PPGYKQDRIVGMGMNEEEL-KRNPVL-TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 212 (299)
Q Consensus 138 ~~~vLDiGcG-~G~~~~--~~~~~~~~v~gvD~S~~ml-~~a~~~-~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~ 212 (299)
..+|+=+|+| .|.... .......+|+.+|.+++-. +.+.+. ... .+. +.+.-.-...|+|++.-.-.+.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~--~~~---~~~~~~l~~aDvVi~at~~~~~- 251 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNA--VPL---DELLELLNEADVVISATGAPHY- 251 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeE--EeH---HHHHHHHhcCCEEEECCCCCch-
Confidence 4679999998 443211 1122346899999997643 444432 222 122 1111111347999987654443
Q ss_pred CHHHHHHHHHhhccCCcEEEEEecCcchHH
Q 022305 213 KPIEVFKEMCQVLKPGGLAIVSFSNRCFWT 242 (299)
Q Consensus 213 d~~~~l~ei~rvLkpGG~lii~~~~~~~~~ 242 (299)
...++.+....+.+|.++++...+....
T Consensus 252 --~~~~~~~~~~~~~~~~~viDlavPrdi~ 279 (311)
T cd05213 252 --AKIVERAMKKRSGKPRLIVDLAVPRDIE 279 (311)
T ss_pred --HHHHHHHHhhCCCCCeEEEEeCCCCCCc
Confidence 3444444433333678999887654433
No 341
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=34.83 E-value=86 Score=25.95 Aligned_cols=39 Identities=28% Similarity=0.483 Sum_probs=27.6
Q ss_pred CCCCCC-CCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 191 KLPFED-NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 191 ~lpf~~-~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
..+... +.+|++++.. + ..+.....-|||||.+++....
T Consensus 49 ~~~~~~~~~~Dilv~l~-------~-~~~~~~~~~l~~~g~vi~ns~~ 88 (173)
T PF01558_consen 49 IIPSPPVGEADILVALD-------P-EALERHLKGLKPGGVVIINSSL 88 (173)
T ss_dssp -SSSS-TSSESEEEESS-------H-HHHHHCGTTCETTEEEEEETTT
T ss_pred CccCcccCCCCEEEEcC-------H-HHHHHHhcCcCcCeEEEEECCC
Confidence 334333 7899999983 4 4445778889999999998643
No 342
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=33.94 E-value=71 Score=28.94 Aligned_cols=87 Identities=16% Similarity=0.155 Sum_probs=49.8
Q ss_pred CCceeeccCc-CCc--cccCCCCCCCe-EEEEeCCHHHHHhcCCC-CcEEEeccCCCCCC----CCCCCCeeEEEecccc
Q 022305 138 YSEVFPPSNT-PGV--SHFPPGYKQDR-IVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL----PFEDNSFDVITNVVSV 208 (299)
Q Consensus 138 ~~~vLDiGcG-~G~--~~~~~~~~~~~-v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~l----pf~~~~FD~Vis~~~l 208 (299)
..++|-.|+| .|. ..++.. .+.+ ++.++.+++..+.+++. ...+....+ ... ....+.+|+|+....
T Consensus 160 g~~vlI~g~g~vg~~~~~la~~-~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~vd~v~~~~~- 235 (334)
T cd08234 160 GDSVLVFGAGPIGLLLAQLLKL-NGASRVTVAEPNEEKLELAKKLGATETVDPSR--EDPEAQKEDNPYGFDVVIEATG- 235 (334)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-cCCcEEEEECCCHHHHHHHHHhCCeEEecCCC--CCHHHHHHhcCCCCcEEEECCC-
Confidence 3577777754 222 112222 3455 89999998888766432 222221110 111 113456999986532
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEE
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
....+.++.+.|+++|.++.
T Consensus 236 -----~~~~~~~~~~~l~~~G~~v~ 255 (334)
T cd08234 236 -----VPKTLEQAIEYARRGGTVLV 255 (334)
T ss_pred -----ChHHHHHHHHHHhcCCEEEE
Confidence 13567888999999998764
No 343
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=33.45 E-value=47 Score=24.96 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=27.9
Q ss_pred CCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHH
Q 022305 196 DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAIS 246 (299)
Q Consensus 196 ~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~ 246 (299)
.+.||++|.... + .=-...|..+.-.++-||.+++-.|+...|.....
T Consensus 9 G~e~~~~i~d~~-~--g~~pnal~a~~gtv~gGGllill~p~~~~w~~~~d 56 (92)
T PF08351_consen 9 GQEFDLLIFDAF-E--GFDPNALAALAGTVRGGGLLILLLPPWESWPQLPD 56 (92)
T ss_dssp T--BSSEEEE-S-S-----HHHHHHHHTTB-TT-EEEEEES-GGGTTTS-B
T ss_pred CCccCEEEEEcc-C--CCCHHHHHHHhcceecCeEEEEEcCCHHHhhhcch
Confidence 355787775531 1 11357788899999999999998888666655443
No 344
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=33.36 E-value=49 Score=30.22 Aligned_cols=86 Identities=19% Similarity=0.207 Sum_probs=46.9
Q ss_pred CceeeccCcCCccccC---CCCCC-CeEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCC------CCCCCCeeEEEeccc
Q 022305 139 SEVFPPSNTPGVSHFP---PGYKQ-DRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL------PFEDNSFDVITNVVS 207 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~---~~~~~-~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~l------pf~~~~FD~Vis~~~ 207 (299)
.+||-.|+| +.+... ....+ ..+++++.++...+.+++. .+. ..+... ..+ -...+.+|+|+....
T Consensus 169 ~~VlI~g~g-~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~-vi~~~~-~~~~~~i~~~~~~~~~d~vld~~g 245 (347)
T cd05278 169 STVAVIGAG-PVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATD-IINPKN-GDIVEQILELTGGRGVDCVIEAVG 245 (347)
T ss_pred CEEEEECCC-HHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcE-EEcCCc-chHHHHHHHHcCCCCCcEEEEccC
Confidence 466665653 222221 11234 4788998888777665442 111 111100 111 012356999986532
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEE
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
- ...+.+..+.|+++|.++.
T Consensus 246 ~------~~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 246 F------EETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred C------HHHHHHHHHHhhcCCEEEE
Confidence 1 2477888999999998764
No 345
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=33.18 E-value=93 Score=28.05 Aligned_cols=87 Identities=14% Similarity=0.103 Sum_probs=50.6
Q ss_pred CCceeeccCcCCccccC---CCCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCC-----CCCCCCeeEEEecccc
Q 022305 138 YSEVFPPSNTPGVSHFP---PGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL-----PFEDNSFDVITNVVSV 208 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~---~~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~l-----pf~~~~FD~Vis~~~l 208 (299)
..++|=.|.+.|.+... ....+.++++++.+++-.+.+++. .+.+. |... +.+ ....+.+|+|+....
T Consensus 144 g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi-~~~~-~~~~~~v~~~~~~gvd~vld~~g- 220 (329)
T cd08294 144 GETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVF-NYKT-VSLEEALKEAAPDGIDCYFDNVG- 220 (329)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEE-eCCC-ccHHHHHHHHCCCCcEEEEECCC-
Confidence 35677667544443332 122467899999998877766543 22211 1100 111 112346898885432
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEE
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
...+.+..+.|+++|.++.
T Consensus 221 ------~~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 221 ------GEFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred ------HHHHHHHHHhhccCCEEEE
Confidence 2457889999999998764
No 346
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=33.01 E-value=56 Score=29.75 Aligned_cols=89 Identities=15% Similarity=0.100 Sum_probs=50.3
Q ss_pred CCceeeccCcCCccccC---CCCCCCeEEEEeCCHHHHHhcCCC-CcEEE-ecc-CCCCC-C-CCCCCCeeEEEeccccc
Q 022305 138 YSEVFPPSNTPGVSHFP---PGYKQDRIVGMGMNEEELKRNPVL-TEYVV-QDL-NLNPK-L-PFEDNSFDVITNVVSVD 209 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~---~~~~~~~v~gvD~S~~ml~~a~~~-~~~~~-~D~-~~~~~-l-pf~~~~FD~Vis~~~l~ 209 (299)
..+||=.|.+.|.+.+. ....+.++++++.+++-.+.+++. .+.+. .+- ..... + ....+.+|+|+-...
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G-- 216 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVG-- 216 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCC--
Confidence 35677777544443332 223467899999998887776543 22211 111 00000 0 012346898885432
Q ss_pred ccCCHHHHHHHHHhhccCCcEEEE
Q 022305 210 YLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 210 ~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
...+.+..++|++||.++.
T Consensus 217 -----~~~~~~~~~~l~~~G~iv~ 235 (325)
T TIGR02825 217 -----GEFSNTVIGQMKKFGRIAI 235 (325)
T ss_pred -----HHHHHHHHHHhCcCcEEEE
Confidence 1245788999999998874
No 347
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=32.76 E-value=3.3e+02 Score=25.81 Aligned_cols=134 Identities=14% Similarity=0.043 Sum_probs=65.7
Q ss_pred ceeeccCc-CCcccc--CCCCCCCeEEEEeCCHHHHHhcCCCC--cEEEeccC-CC------CCCC-CC-------CCCe
Q 022305 140 EVFPPSNT-PGVSHF--PPGYKQDRIVGMGMNEEELKRNPVLT--EYVVQDLN-LN------PKLP-FE-------DNSF 199 (299)
Q Consensus 140 ~vLDiGcG-~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~~~--~~~~~D~~-~~------~~lp-f~-------~~~F 199 (299)
+|+-+|+| -|.+++ .....+..|+++|..+.+++.-+++- +....+.. .. ..+. .. -...
T Consensus 2 ki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~ 81 (381)
T PRK02318 2 KAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAEA 81 (381)
T ss_pred ceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcCC
Confidence 67888888 444332 12224678999999888887544431 11121110 00 1110 01 1256
Q ss_pred eEEEecccccccCCHHHHHHHHHhhccC-------CcEEEEEecCcchHHHHHHhh-hhcCCCchhhhHHHHHHHhCCCC
Q 022305 200 DVITNVVSVDYLTKPIEVFKEMCQVLKP-------GGLAIVSFSNRCFWTKAISIW-TSTGDADHVMIVGAYFHYAGGYE 271 (299)
Q Consensus 200 D~Vis~~~l~~~~d~~~~l~ei~rvLkp-------GG~lii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~aGF~ 271 (299)
|+|+..-...+. ..++..+...|++ ++..+++.-|-..-...+... ....+ .-+..++....||.
T Consensus 82 dlvt~~v~~~~~---~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~~ng~~L~~~V~~~~~----~~~~~wi~~~~~f~ 154 (381)
T PRK02318 82 DLVTTAVGPNIL---PFIAPLIAKGLKKRKAQGNTKPLNIIACENMIRGTSFLKKHVLKALS----EDEKAWLEEHVGFV 154 (381)
T ss_pred CEEEeCCCcccc---hhHHHHHHHHHHHHHHcCCCCCCEEEecCChhhHHHHHHHHHHHhCC----HHHHHHHHhcCCCC
Confidence 777655444443 3444444444432 335677766643322222221 11111 12455666678888
Q ss_pred CCeeeecCC
Q 022305 272 PPQAVDISP 280 (299)
Q Consensus 272 ~v~~~~~~~ 280 (299)
..-+-.+.|
T Consensus 155 ~t~VDrI~P 163 (381)
T PRK02318 155 DSAVDRIVP 163 (381)
T ss_pred CcHHhcCCC
Confidence 766655655
No 348
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=32.47 E-value=72 Score=29.82 Aligned_cols=86 Identities=14% Similarity=0.208 Sum_probs=49.6
Q ss_pred CceeeccCcCCccccC---CCCCCC-eEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCC-----CCCCCCeeEEEecccc
Q 022305 139 SEVFPPSNTPGVSHFP---PGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL-----PFEDNSFDVITNVVSV 208 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~---~~~~~~-~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~l-----pf~~~~FD~Vis~~~l 208 (299)
.+||=.|+| +.+.+. ....+. +|+++|.+++-++.+++. .+.+ .+... +.+ ....+.+|+|+-...
T Consensus 193 ~~VlV~G~G-~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~-i~~~~-~~~~~~i~~~~~~g~d~vid~~G- 268 (371)
T cd08281 193 QSVAVVGLG-GVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATAT-VNAGD-PNAVEQVRELTGGGVDYAFEMAG- 268 (371)
T ss_pred CEEEEECCC-HHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceE-eCCCc-hhHHHHHHHHhCCCCCEEEECCC-
Confidence 567777865 333332 122355 699999999988877653 2211 11100 111 011235898885432
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEE
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
-...+.+..+.|++||.+++
T Consensus 269 -----~~~~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 269 -----SVPALETAYEITRRGGTTVT 288 (371)
T ss_pred -----ChHHHHHHHHHHhcCCEEEE
Confidence 12467788899999997765
No 349
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=32.02 E-value=3.1e+02 Score=23.16 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=31.6
Q ss_pred HHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCCCCCCCeEEEEEE
Q 022305 215 IEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPMYVVYSR 294 (299)
Q Consensus 215 ~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~~~~p~~~v~ar 294 (299)
..+++-+++.|.|||.++++.-... +. ..-...+-+......+..+ ..+||+-.+---.+ .|+.+--.=+.|-
T Consensus 66 ~~l~~~~~~~l~pg~~lfVeY~~D~---eT-~~~L~~G~pp~~TrLG~~L-l~~GFtwfKdWYfP--EG~~EGg~KlQa~ 138 (170)
T PF06557_consen 66 DELYKLFSRYLEPGGRLFVEYVEDR---ET-RRQLQRGVPPAETRLGFSL-LKAGFTWFKDWYFP--EGGMEGGPKLQAE 138 (170)
T ss_dssp HHHHHHHHTT----SEEEEE-TT-H---HH-HHHHHTT--GGGSHHHHHH-HTTT--EEEEEE----TTTSTT-EEEEEE
T ss_pred HHHHHHHHHHhhhcCeEEEEEecCH---HH-HHHHHcCCCcccchhHHHH-HhCCcEEEeeeecc--CccccCCceeeee
Confidence 4678889999999999999865421 11 1111222222223344433 45889876644333 2344444445555
Q ss_pred ec
Q 022305 295 KA 296 (299)
Q Consensus 295 K~ 296 (299)
||
T Consensus 139 Kp 140 (170)
T PF06557_consen 139 KP 140 (170)
T ss_dssp --
T ss_pred cC
Confidence 54
No 350
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=31.40 E-value=16 Score=34.71 Aligned_cols=94 Identities=12% Similarity=0.100 Sum_probs=47.2
Q ss_pred CceeeccCc-CCccccC-CCCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCCCCCCCCeeEEEecccccccCCHH
Q 022305 139 SEVFPPSNT-PGVSHFP-PGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPI 215 (299)
Q Consensus 139 ~~vLDiGcG-~G~~~~~-~~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~ 215 (299)
.+++=+|+| .|..... ....+.+|+.+|.+++-++..... ...+..+....+.+.-.-..+|+|++.-.+.--+.+.
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p~ 247 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAPK 247 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCCCc
Confidence 457777877 3431111 112356899999998766554322 1112121100011111114589999764222122232
Q ss_pred HHHHHHHhhccCCcEEE
Q 022305 216 EVFKEMCQVLKPGGLAI 232 (299)
Q Consensus 216 ~~l~ei~rvLkpGG~li 232 (299)
-+-+++.+.+|||+.++
T Consensus 248 lit~~~l~~mk~g~vIv 264 (370)
T TIGR00518 248 LVSNSLVAQMKPGAVIV 264 (370)
T ss_pred CcCHHHHhcCCCCCEEE
Confidence 23366777789998655
No 351
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=30.70 E-value=65 Score=29.44 Aligned_cols=88 Identities=13% Similarity=0.169 Sum_probs=49.4
Q ss_pred CCceeeccCcCCccccC---CCCCCCe-EEEEeCCHHHHHhcCCC-CcEEEeccCCC--CCC-CC-CCCCeeEEEecccc
Q 022305 138 YSEVFPPSNTPGVSHFP---PGYKQDR-IVGMGMNEEELKRNPVL-TEYVVQDLNLN--PKL-PF-EDNSFDVITNVVSV 208 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~---~~~~~~~-v~gvD~S~~ml~~a~~~-~~~~~~D~~~~--~~l-pf-~~~~FD~Vis~~~l 208 (299)
..+||=.|+| +.+.+. ....+.+ |+++|.+++-++.+++. .+.+ .|.... +.+ .. ....+|+|+-...
T Consensus 164 g~~vlV~G~G-~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~-i~~~~~~~~~~~~~~~~~~~d~vid~~g- 240 (339)
T cd08239 164 RDTVLVVGAG-PVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFV-INSGQDDVQEIRELTSGAGADVAIECSG- 240 (339)
T ss_pred CCEEEEECCC-HHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEE-EcCCcchHHHHHHHhCCCCCCEEEECCC-
Confidence 4567777765 333332 1224566 99999999888876553 2221 121000 111 11 2346999885432
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEE
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
-...+.+..+.|+++|.+++
T Consensus 241 -----~~~~~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 241 -----NTAARRLALEAVRPWGRLVL 260 (339)
T ss_pred -----CHHHHHHHHHHhhcCCEEEE
Confidence 12355777889999997764
No 352
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=29.84 E-value=4.7e+02 Score=24.53 Aligned_cols=142 Identities=12% Similarity=0.096 Sum_probs=71.2
Q ss_pred hcCCceeeccCcCCccccCCC----CCCCeEEEEeCCHHHHHhcCCC-----------------------------CcEE
Q 022305 136 KYYSEVFPPSNTPGVSHFPPG----YKQDRIVGMGMNEEELKRNPVL-----------------------------TEYV 182 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~~----~~~~~v~gvD~S~~ml~~a~~~-----------------------------~~~~ 182 (299)
.....|+.+|||.-+..+... .....++=||.++....+...+ ...+
T Consensus 86 ~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~ 165 (335)
T KOG2918|consen 86 DGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHLI 165 (335)
T ss_pred CCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceeee
Confidence 344578999998555333221 2346788888887765544110 1223
Q ss_pred EeccCCCCCCC-------CCCCCeeEEEecccccccC--CHHHHHHHHHhhccCCcEEEEEecC--cchHHHHHHhhhhc
Q 022305 183 VQDLNLNPKLP-------FEDNSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFSN--RCFWTKAISIWTST 251 (299)
Q Consensus 183 ~~D~~~~~~lp-------f~~~~FD~Vis~~~l~~~~--d~~~~l~ei~rvLkpGG~lii~~~~--~~~~~~~~~~~~~~ 251 (299)
-+|+++..++. ...+-.-++++-.+|.|++ .-...++.+...-...+.++.+-.+ ..|-.-..+.+..-
T Consensus 166 g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv~YEQi~~~D~Fg~vM~~nlk~r 245 (335)
T KOG2918|consen 166 GCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFVNYEQINPNDRFGKVMLANLKRR 245 (335)
T ss_pred ccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEEEEeccCCCChHHHHHHHHHHhc
Confidence 34442111110 1112223455666777774 2346778887777777766666433 22222222333222
Q ss_pred C----CCc---hhhhHHHHHHHhCCCCCCeeeec
Q 022305 252 G----DAD---HVMIVGAYFHYAGGYEPPQAVDI 278 (299)
Q Consensus 252 ~----~~~---~~~~~~~~~~~~aGF~~v~~~~~ 278 (299)
+ +-+ -+.-..+.| ..+||+.+.+.|+
T Consensus 246 ~~~L~gle~y~s~Esq~~Rf-~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 246 GCPLHGLETYNSIESQRSRF-LKAGWEYVIAVDM 278 (335)
T ss_pred CCCCchhhhcccHHHHHHHH-HhcCCceeehhhH
Confidence 1 111 112122222 3499999988876
No 353
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=29.79 E-value=92 Score=29.53 Aligned_cols=73 Identities=19% Similarity=0.331 Sum_probs=41.8
Q ss_pred CCeEEEEeCCHHHHHhcCCC--CcEEEeccC--CCCC-CCCCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEE-E
Q 022305 159 QDRIVGMGMNEEELKRNPVL--TEYVVQDLN--LNPK-LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLA-I 232 (299)
Q Consensus 159 ~~~v~gvD~S~~ml~~a~~~--~~~~~~D~~--~~~~-lpf~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~l-i 232 (299)
..+++++|++++-++.|++. .+++...-. ..+. ....+...|.++ +...+. +++++....+.++|.. +
T Consensus 210 A~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~-----e~~G~~-~~~~~al~~~~~~G~~v~ 283 (366)
T COG1062 210 AGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAF-----ECVGNV-EVMRQALEATHRGGTSVI 283 (366)
T ss_pred CceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEE-----EccCCH-HHHHHHHHHHhcCCeEEE
Confidence 35899999999999999885 333332110 0000 012233455543 223233 3778888888889955 4
Q ss_pred EEecC
Q 022305 233 VSFSN 237 (299)
Q Consensus 233 i~~~~ 237 (299)
+.+++
T Consensus 284 iGv~~ 288 (366)
T COG1062 284 IGVAG 288 (366)
T ss_pred EecCC
Confidence 55554
No 354
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=29.66 E-value=53 Score=30.05 Aligned_cols=86 Identities=12% Similarity=0.123 Sum_probs=48.9
Q ss_pred CceeeccCcCCccccCC---CCCCC-eEEEEeCCHHHHHhcCC-C-CcEEEeccCCCCCC-----CCCCCCeeEEEeccc
Q 022305 139 SEVFPPSNTPGVSHFPP---GYKQD-RIVGMGMNEEELKRNPV-L-TEYVVQDLNLNPKL-----PFEDNSFDVITNVVS 207 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~---~~~~~-~v~gvD~S~~ml~~a~~-~-~~~~~~D~~~~~~l-----pf~~~~FD~Vis~~~ 207 (299)
.+||=.|++.|.+.... ...+. +|++++.+++-.+.+.+ . .+.+...-. +.+ ...++.+|+|+....
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~--~~~~~~i~~~~~~gvd~vid~~g 233 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKT--DNVAERLRELCPEGVDVYFDNVG 233 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCC--CCHHHHHHHHCCCCceEEEECCC
Confidence 57777776545433321 22456 79999999877665543 1 222211110 111 112246999986432
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEE
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
. ..+.+..+.|+++|.++.
T Consensus 234 -----~--~~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 234 -----G--EISDTVISQMNENSHIIL 252 (345)
T ss_pred -----c--HHHHHHHHHhccCCEEEE
Confidence 1 235788899999998764
No 355
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=29.33 E-value=48 Score=32.11 Aligned_cols=83 Identities=11% Similarity=0.056 Sum_probs=48.1
Q ss_pred CCceeeccCc-CCc--cccCCCCCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCCCCCCeeEEEecccccccCCH
Q 022305 138 YSEVFPPSNT-PGV--SHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP 214 (299)
Q Consensus 138 ~~~vLDiGcG-~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~ 214 (299)
..+|+=+|+| .|. ..... ..+.+|+.+|.++.-...+... -+...++ ++. . ...|+|++.- ..
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak-~~Ga~ViV~d~dp~r~~~A~~~-G~~v~~l---eea-l--~~aDVVItaT------G~ 260 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRAR-GMGARVIVTEVDPIRALEAAMD-GFRVMTM---EEA-A--KIGDIFITAT------GN 260 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHh-hCcCEEEEEeCChhhHHHHHhc-CCEeCCH---HHH-H--hcCCEEEECC------CC
Confidence 4578888888 443 22222 2467899999888654433322 1222232 111 1 3469987643 22
Q ss_pred HHHHH-HHHhhccCCcEEEEE
Q 022305 215 IEVFK-EMCQVLKPGGLAIVS 234 (299)
Q Consensus 215 ~~~l~-ei~rvLkpGG~lii~ 234 (299)
..++. +....+|+|+.++..
T Consensus 261 ~~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 261 KDVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred HHHHHHHHHhcCCCCcEEEEE
Confidence 44454 488899999977764
No 356
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=29.23 E-value=40 Score=30.97 Aligned_cols=83 Identities=19% Similarity=0.177 Sum_probs=48.0
Q ss_pred CCceeeccCc-CCcc--ccCCCCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCCCCCCCCeeEEEecccccccCC
Q 022305 138 YSEVFPPSNT-PGVS--HFPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 213 (299)
Q Consensus 138 ~~~vLDiGcG-~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d 213 (299)
..+++=+|.| .|.. ..... .+++|+.+|.++...+.+... .++ .+. ..+.-.-+.+|+|+..-..
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~-~Ga~V~v~~r~~~~~~~~~~~G~~~--~~~---~~l~~~l~~aDiVI~t~p~----- 220 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKA-LGANVTVGARKSAHLARITEMGLSP--FHL---SELAEEVGKIDIIFNTIPA----- 220 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHcCCee--ecH---HHHHHHhCCCCEEEECCCh-----
Confidence 4678889987 4431 11222 367999999998876665442 222 122 1222112468999986311
Q ss_pred HHHHHHHHHhhccCCcEEE
Q 022305 214 PIEVFKEMCQVLKPGGLAI 232 (299)
Q Consensus 214 ~~~~l~ei~rvLkpGG~li 232 (299)
.-.-+++.+.++||+.++
T Consensus 221 -~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 221 -LVLTKEVLSKMPPEALII 238 (296)
T ss_pred -hhhhHHHHHcCCCCcEEE
Confidence 123356777889987554
No 357
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=29.14 E-value=26 Score=32.65 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=19.4
Q ss_pred CHHHHHHHHHhhccCCcEE-EEEecC
Q 022305 213 KPIEVFKEMCQVLKPGGLA-IVSFSN 237 (299)
Q Consensus 213 d~~~~l~ei~rvLkpGG~l-ii~~~~ 237 (299)
.+...|..+..+|+|||.+ ||+|..
T Consensus 219 ~L~~~L~~a~~~L~~gGrl~VISFHS 244 (310)
T PF01795_consen 219 ELERGLEAAPDLLKPGGRLVVISFHS 244 (310)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEESSH
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEecc
Confidence 4678899999999999965 555553
No 358
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.09 E-value=38 Score=26.89 Aligned_cols=86 Identities=12% Similarity=0.132 Sum_probs=49.1
Q ss_pred CCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCCCCCCeeEEEecccccccCCHH
Q 022305 138 YSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPI 215 (299)
Q Consensus 138 ~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~ 215 (299)
.++|+++|-|-=. .... ...+..++++|+++. .+++.+++++.|+.. .++..- ..-|+|.|. .--++..
T Consensus 14 ~gkVvEVGiG~~~~VA~~L-~e~g~dv~atDI~~~---~a~~g~~~v~DDitn-P~~~iY-~~A~lIYSi---RpppEl~ 84 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRL-AERGFDVLATDINEK---TAPEGLRFVVDDITN-PNISIY-EGADLIYSI---RPPPELQ 84 (129)
T ss_pred CCcEEEEccchHHHHHHHH-HHcCCcEEEEecccc---cCcccceEEEccCCC-ccHHHh-hCccceeec---CCCHHHH
Confidence 3589999876221 1111 224689999999998 666778999999821 122221 235777664 2223444
Q ss_pred HHHHHHHhhccCCcEEEEE
Q 022305 216 EVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 216 ~~l~ei~rvLkpGG~lii~ 234 (299)
..+-++.+.++ .-++|.
T Consensus 85 ~~ildva~aVg--a~l~I~ 101 (129)
T COG1255 85 SAILDVAKAVG--APLYIK 101 (129)
T ss_pred HHHHHHHHhhC--CCEEEE
Confidence 44444444433 345553
No 359
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=28.96 E-value=2.7e+02 Score=24.97 Aligned_cols=88 Identities=8% Similarity=0.039 Sum_probs=57.0
Q ss_pred cCCceeecc---CcCCccccCCCCCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCCCCCCeeEEEecccccccCC
Q 022305 137 YYSEVFPPS---NTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 213 (299)
Q Consensus 137 ~~~~vLDiG---cG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d 213 (299)
.+.++|=+| ||.+....... .++|+-+|+.|.+.+.-..+++|...- ..+ ...+|+|+-.-.+--+.
T Consensus 41 ~~k~~lI~G~YltG~~iA~~L~~--~~eV~lvDI~p~lk~ll~~~i~F~~~~----~~~---~~~~DlIID~TGlGGv~- 110 (252)
T PF06690_consen 41 EFKQALIFGAYLTGNFIASALSK--KCEVTLVDIHPHLKELLNENIKFMEFR----NGL---EGNPDLIIDTTGLGGVD- 110 (252)
T ss_pred ccceEEEEEEEeehHHHHHHhcc--CceEEEEeCcHHHHHHhcCCCceeecc----CCC---CCCCCEEEECCCCCCCC-
Confidence 456888888 34444333333 249999999999999887778887332 122 23699999877776662
Q ss_pred HHHHHHHHHhhccCCcEEEEEecCcch
Q 022305 214 PIEVFKEMCQVLKPGGLAIVSFSNRCF 240 (299)
Q Consensus 214 ~~~~l~ei~rvLkpGG~lii~~~~~~~ 240 (299)
| +..+-+.| ..||++.|....
T Consensus 111 ~-----~~Ls~~~p-~v~IVEdP~~~~ 131 (252)
T PF06690_consen 111 P-----DFLSKFNP-KVFIVEDPKGDG 131 (252)
T ss_pred H-----HHHhccCC-CEEEEECCCccC
Confidence 2 23344553 478888776444
No 360
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=28.94 E-value=84 Score=28.45 Aligned_cols=87 Identities=15% Similarity=-0.005 Sum_probs=49.2
Q ss_pred CceeeccCc-CCcccc-CCCCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCCC-CCCCCeeEEEecccccccCCH
Q 022305 139 SEVFPPSNT-PGVSHF-PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP-FEDNSFDVITNVVSVDYLTKP 214 (299)
Q Consensus 139 ~~vLDiGcG-~G~~~~-~~~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~lp-f~~~~FD~Vis~~~l~~~~d~ 214 (299)
.+||-.|+| .|.... .....+.++++++.+++.++..++. .+.+..+.. .... -..+.+|+++....-
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~d~vi~~~~~------ 235 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGA--ELDEQAAAGGADVILVTVVS------ 235 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCC--cchHHhccCCCCEEEECCCc------
Confidence 467777776 332111 1122457899999999888776432 111111110 0100 012458988865321
Q ss_pred HHHHHHHHhhccCCcEEEE
Q 022305 215 IEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 215 ~~~l~ei~rvLkpGG~lii 233 (299)
...+.++.+.|+++|.++.
T Consensus 236 ~~~~~~~~~~l~~~G~~i~ 254 (330)
T cd08245 236 GAAAEAALGGLRRGGRIVL 254 (330)
T ss_pred HHHHHHHHHhcccCCEEEE
Confidence 2467888999999997765
No 361
>PF08498 Sterol_MT_C: Sterol methyltransferase C-terminal; InterPro: IPR013705 This domain is found to the C terminus of a methyltransferase domain (IPR013216 from INTERPRO) in fungal and plant sterol methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006694 steroid biosynthetic process
Probab=28.93 E-value=21 Score=25.37 Aligned_cols=12 Identities=42% Similarity=0.833 Sum_probs=10.7
Q ss_pred CCeEEEEEEecC
Q 022305 286 DPMYVVYSRKAS 297 (299)
Q Consensus 286 ~p~~~v~arK~~ 297 (299)
.|+|.+++|||.
T Consensus 56 TPMyl~v~RKP~ 67 (67)
T PF08498_consen 56 TPMYLFVARKPE 67 (67)
T ss_pred CchhheeeccCC
Confidence 599999999984
No 362
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=28.27 E-value=99 Score=29.86 Aligned_cols=95 Identities=20% Similarity=0.199 Sum_probs=48.1
Q ss_pred ceeeccCc-CCc-cccCCCCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCC-------CCCCCC--CCCCeeEEEeccc
Q 022305 140 EVFPPSNT-PGV-SHFPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNL-------NPKLPF--EDNSFDVITNVVS 207 (299)
Q Consensus 140 ~vLDiGcG-~G~-~~~~~~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~-------~~~lpf--~~~~FD~Vis~~~ 207 (299)
+|-=+|.| -|. ........+.+|+++|++++-++..+.. ..+...++.. ...+.+ ..+.-|+|+.+.-
T Consensus 5 kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~vp 84 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAVP 84 (415)
T ss_pred EEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEcC
Confidence 45556776 332 1112223468999999999988753321 1111111100 000000 1124677765432
Q ss_pred cc-------ccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 208 VD-------YLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 208 l~-------~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
-. .+.....+++++.+.|++|-.+|+.
T Consensus 85 tp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ 118 (415)
T PRK11064 85 TPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILE 118 (415)
T ss_pred CCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEe
Confidence 21 2223456678889999988766654
No 363
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=27.70 E-value=81 Score=28.16 Aligned_cols=88 Identities=9% Similarity=0.100 Sum_probs=49.1
Q ss_pred CCceeeccCcCCccccC---CCCCCCe-EEEEeCCHHHHHhcCCC-CcEEEeccCC-CCCC-CC-CCCCeeEEEeccccc
Q 022305 138 YSEVFPPSNTPGVSHFP---PGYKQDR-IVGMGMNEEELKRNPVL-TEYVVQDLNL-NPKL-PF-EDNSFDVITNVVSVD 209 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~---~~~~~~~-v~gvD~S~~ml~~a~~~-~~~~~~D~~~-~~~l-pf-~~~~FD~Vis~~~l~ 209 (299)
-.+||=.|+| +.+.+. .+..+.+ |+.+|.+++-++.+++. .+.+. |... ...+ .. ....+|+|+-...
T Consensus 121 g~~VlV~G~G-~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i-~~~~~~~~~~~~~~~~g~d~vid~~G-- 196 (280)
T TIGR03366 121 GRRVLVVGAG-MLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALA-EPEVLAERQGGLQNGRGVDVALEFSG-- 196 (280)
T ss_pred CCEEEEECCC-HHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEec-CchhhHHHHHHHhCCCCCCEEEECCC--
Confidence 3567777775 233322 1223554 99999998888776653 21111 1100 0000 01 1235888875432
Q ss_pred ccCCHHHHHHHHHhhccCCcEEEE
Q 022305 210 YLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 210 ~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
-...+++..+.|+|+|.+++
T Consensus 197 ----~~~~~~~~~~~l~~~G~iv~ 216 (280)
T TIGR03366 197 ----ATAAVRACLESLDVGGTAVL 216 (280)
T ss_pred ----ChHHHHHHHHHhcCCCEEEE
Confidence 13467888999999997764
No 364
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.26 E-value=58 Score=27.87 Aligned_cols=96 Identities=19% Similarity=0.139 Sum_probs=53.0
Q ss_pred CceeeccCcCCccccC---CCCCCCeEEEEeCCHHHHHhc----C--CCCcEEEeccCCCCCCC--C-----CCCCeeEE
Q 022305 139 SEVFPPSNTPGVSHFP---PGYKQDRIVGMGMNEEELKRN----P--VLTEYVVQDLNLNPKLP--F-----EDNSFDVI 202 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~---~~~~~~~v~gvD~S~~ml~~a----~--~~~~~~~~D~~~~~~lp--f-----~~~~FD~V 202 (299)
+++|=.|++.|.+... ....+.+|++++-+++-++.. . ..+.++.+|+...+.+. + .-+..|.+
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~i 85 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAIDGL 85 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 4678888876653221 112467999999988755432 1 13677788873211110 0 01346888
Q ss_pred EecccccccC---C--------------HHHHHHHHHhhccCCcEEEEE
Q 022305 203 TNVVSVDYLT---K--------------PIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 203 is~~~l~~~~---d--------------~~~~l~ei~rvLkpGG~lii~ 234 (299)
+.+....... + +..+++.+.+.++++|.+++.
T Consensus 86 i~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ 134 (238)
T PRK05786 86 VVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLV 134 (238)
T ss_pred EEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEE
Confidence 7665432111 1 123355666677788876654
No 365
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=27.22 E-value=53 Score=27.95 Aligned_cols=21 Identities=24% Similarity=0.570 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhccCCcEEEEE
Q 022305 214 PIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 214 ~~~~l~ei~rvLkpGG~lii~ 234 (299)
...+++++.+.|++|-.+++.
T Consensus 99 v~~a~~~i~~~l~~~~lvV~~ 119 (185)
T PF03721_consen 99 VESAIESIAPVLRPGDLVVIE 119 (185)
T ss_dssp HHHHHHHHHHHHCSCEEEEES
T ss_pred HHHHHHHHHHHHhhcceEEEc
Confidence 578899999999997777775
No 366
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=27.19 E-value=97 Score=28.35 Aligned_cols=89 Identities=16% Similarity=0.147 Sum_probs=50.9
Q ss_pred CCceeeccCcCCccccCC---CCCCCeEEEEeCCHHHHHhcCC-C-CcE-EEecc--CCCCCC-CCCCCCeeEEEecccc
Q 022305 138 YSEVFPPSNTPGVSHFPP---GYKQDRIVGMGMNEEELKRNPV-L-TEY-VVQDL--NLNPKL-PFEDNSFDVITNVVSV 208 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~---~~~~~~v~gvD~S~~ml~~a~~-~-~~~-~~~D~--~~~~~l-pf~~~~FD~Vis~~~l 208 (299)
..+||=.|++.|.+.+.. ...+.++++++.+++-.+.+++ . .+. +..+- ...+.+ ....+.+|+|+-...
T Consensus 152 g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g- 230 (338)
T cd08295 152 GETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVG- 230 (338)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCC-
Confidence 356777776444444321 2246789999999887776654 2 222 21110 000000 111256899886432
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEE
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
...+.+..+.|+++|.++.
T Consensus 231 ------~~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 231 ------GKMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred ------HHHHHHHHHHhccCcEEEE
Confidence 2567888999999998764
No 367
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=26.83 E-value=3e+02 Score=26.74 Aligned_cols=80 Identities=20% Similarity=0.196 Sum_probs=44.6
Q ss_pred CCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccC-------CCCCC----CCC-CCCeeEEE-eccc-c--cccCCH---H
Q 022305 156 GYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLN-------LNPKL----PFE-DNSFDVIT-NVVS-V--DYLTKP---I 215 (299)
Q Consensus 156 ~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~-------~~~~l----pf~-~~~FD~Vi-s~~~-l--~~~~d~---~ 215 (299)
...+.+|+|+||++.-++.-++. .....-+.. ....| .++ -..-|+++ |.=+ + ++-+|+ .
T Consensus 29 A~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~iI~VPTPl~~~~~pDls~v~ 108 (436)
T COG0677 29 ASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFIICVPTPLKKYREPDLSYVE 108 (436)
T ss_pred HHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEEEEecCCcCCCCCCChHHHH
Confidence 33578999999999988865442 111111110 00011 111 11346544 3221 1 233443 5
Q ss_pred HHHHHHHhhccCCcEEEEEe
Q 022305 216 EVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 216 ~~l~ei~rvLkpGG~lii~~ 235 (299)
++.+.+.++||+|-+++++-
T Consensus 109 ~aa~sIa~~L~kG~LVIlES 128 (436)
T COG0677 109 SAARSIAPVLKKGDLVILES 128 (436)
T ss_pred HHHHHHHHhcCCCCEEEEec
Confidence 78899999999999999873
No 368
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=26.47 E-value=1.2e+02 Score=27.16 Aligned_cols=86 Identities=19% Similarity=0.288 Sum_probs=48.3
Q ss_pred CceeeccCcCCccccC---CCCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCC------CCCCCCeeEEEecccc
Q 022305 139 SEVFPPSNTPGVSHFP---PGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL------PFEDNSFDVITNVVSV 208 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~---~~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~l------pf~~~~FD~Vis~~~l 208 (299)
..+|-.|.+.+.+... ....+.+++.++.+++..+.++.. ...+ .+... ... ......+|+++....-
T Consensus 168 ~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~d~~i~~~g~ 245 (342)
T cd08266 168 ETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGADYV-IDYRK-EDFVREVRELTGKRGVDVVVEHVGA 245 (342)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCeE-EecCC-hHHHHHHHHHhCCCCCcEEEECCcH
Confidence 4677677665543322 122467899999988776655332 1111 12200 000 0123468998876432
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEE
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
..+.++.+.|+++|.++.
T Consensus 246 -------~~~~~~~~~l~~~G~~v~ 263 (342)
T cd08266 246 -------ATWEKSLKSLARGGRLVT 263 (342)
T ss_pred -------HHHHHHHHHhhcCCEEEE
Confidence 346778889999997765
No 369
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.47 E-value=1.5e+02 Score=25.98 Aligned_cols=88 Identities=17% Similarity=0.154 Sum_probs=56.2
Q ss_pred cCCceeeccCc-CCccccCCCCCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCCCCCCeeEEEecccccccCCHH
Q 022305 137 YYSEVFPPSNT-PGVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPI 215 (299)
Q Consensus 137 ~~~~vLDiGcG-~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~ 215 (299)
.+.++|=+|.= +|...-...-..++|+-+|+.|.|-...+..++|... +.+..+.+|+|+-.-.+--+. |
T Consensus 44 E~~~vli~G~YltG~~~a~~Ls~~~~vtv~Di~p~~r~~lp~~v~Fr~~-------~~~~~G~~DlivDlTGlGG~~-P- 114 (254)
T COG4017 44 EFKEVLIFGVYLTGNYTAQMLSKADKVTVVDIHPFMRGFLPNNVKFRNL-------LKFIRGEVDLIVDLTGLGGIE-P- 114 (254)
T ss_pred CcceEEEEEeeehhHHHHHHhcccceEEEecCCHHHHhcCCCCccHhhh-------cCCCCCceeEEEeccccCCCC-H-
Confidence 45678888753 3431111111368999999999998888877666443 445678899999877666552 2
Q ss_pred HHHHHHHhhccCCcEEEEEecCc
Q 022305 216 EVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 216 ~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
|..+-+.|+ .||++.|..
T Consensus 115 ----e~L~~fnp~-vfiVEdP~g 132 (254)
T COG4017 115 ----EFLAKFNPK-VFIVEDPKG 132 (254)
T ss_pred ----HHHhccCCc-eEEEECCCC
Confidence 334455664 566766543
No 370
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=26.39 E-value=1e+02 Score=28.64 Aligned_cols=92 Identities=11% Similarity=0.151 Sum_probs=56.4
Q ss_pred CceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCCC---CcEEEeccCCCCCCC---CCCCCeeEEEeccccccc
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLP---FEDNSFDVITNVVSVDYL 211 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~~---~~~~~~D~~~~~~lp---f~~~~FD~Vis~~~l~~~ 211 (299)
.+++|+=||+|...+.....+ .-+.++|+++..++.-+.+ ...+..|+ ..+. +....+|+++...=.+.+
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~~~~~~~di---~~~~~~~~~~~~~DvligGpPCQ~F 80 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPHGDIILGDI---KELDGEALRKSDVDVLIGGPPCQDF 80 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCCCceeechH---hhcChhhccccCCCEEEeCCCCcch
Confidence 478999999886445444444 4577899999998754332 45666777 3332 222279999965333322
Q ss_pred ---------CCHH----HHHHHHHhhccCCcEEEEE
Q 022305 212 ---------TKPI----EVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 212 ---------~d~~----~~l~ei~rvLkpGG~lii~ 234 (299)
.|+. -.+.++...++| -.|+++
T Consensus 81 S~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~E 115 (328)
T COG0270 81 SIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLE 115 (328)
T ss_pred hhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEe
Confidence 3443 344566667788 555665
No 371
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=26.17 E-value=24 Score=32.94 Aligned_cols=87 Identities=20% Similarity=0.260 Sum_probs=52.9
Q ss_pred CCceeeccCcCCccccCCCC---CCCeEEEEeCCHHHHHhcCCC-----CcEEEeccCCCCCC-CC-CCCCeeEEEeccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGY---KQDRIVGMGMNEEELKRNPVL-----TEYVVQDLNLNPKL-PF-EDNSFDVITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~---~~~~v~gvD~S~~ml~~a~~~-----~~~~~~D~~~~~~l-pf-~~~~FD~Vis~~~ 207 (299)
-.+||=.|...|.+.+...+ .+..++++--+++-.+.+++. +++...|+. +.. .+ ....+|+|+....
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~--~~v~~~t~g~gvDvv~D~vG 220 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFV--EQVRELTGGKGVDVVLDTVG 220 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHH--HHHHHHcCCCCceEEEECCC
Confidence 46788888777776554332 344777777777666666654 222222221 111 12 2346999998754
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEE
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
- ..+.+..+.|+++|.++.
T Consensus 221 ~-------~~~~~~l~~l~~~G~lv~ 239 (326)
T COG0604 221 G-------DTFAASLAALAPGGRLVS 239 (326)
T ss_pred H-------HHHHHHHHHhccCCEEEE
Confidence 3 445778889999997665
No 372
>PLN02740 Alcohol dehydrogenase-like
Probab=25.61 E-value=1.3e+02 Score=28.33 Aligned_cols=89 Identities=16% Similarity=0.263 Sum_probs=49.3
Q ss_pred CCceeeccCcCCccccC---CCCCCC-eEEEEeCCHHHHHhcCCC-Cc-EEEeccC---CCCCC-CCCCCCeeEEEeccc
Q 022305 138 YSEVFPPSNTPGVSHFP---PGYKQD-RIVGMGMNEEELKRNPVL-TE-YVVQDLN---LNPKL-PFEDNSFDVITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~---~~~~~~-~v~gvD~S~~ml~~a~~~-~~-~~~~D~~---~~~~l-pf~~~~FD~Vis~~~ 207 (299)
-++||=.|+| +.+.+. ....+. +|+++|.+++-++.+++. .+ ++..+-. ..+.+ ....+.+|+|+-...
T Consensus 199 g~~VlV~G~G-~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G 277 (381)
T PLN02740 199 GSSVAIFGLG-AVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECAG 277 (381)
T ss_pred CCEEEEECCC-HHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence 3567777875 333322 122355 699999999988887653 22 2211100 00000 011226898886543
Q ss_pred ccccCCHHHHHHHHHhhccCC-cEEEE
Q 022305 208 VDYLTKPIEVFKEMCQVLKPG-GLAIV 233 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpG-G~lii 233 (299)
-...+.+..+.+++| |.+++
T Consensus 278 ------~~~~~~~a~~~~~~g~G~~v~ 298 (381)
T PLN02740 278 ------NVEVLREAFLSTHDGWGLTVL 298 (381)
T ss_pred ------ChHHHHHHHHhhhcCCCEEEE
Confidence 124677778889997 86554
No 373
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=25.39 E-value=56 Score=29.92 Aligned_cols=84 Identities=21% Similarity=0.162 Sum_probs=46.8
Q ss_pred CceeeccCc-CCc---cccCCCCCCCeEEEEeCCHHHHHhcCCC-C-cEEEeccCCCCCCCCCCCCeeEEEecccccccC
Q 022305 139 SEVFPPSNT-PGV---SHFPPGYKQDRIVGMGMNEEELKRNPVL-T-EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 212 (299)
Q Consensus 139 ~~vLDiGcG-~G~---~~~~~~~~~~~v~gvD~S~~ml~~a~~~-~-~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~ 212 (299)
.+|.=+|+| -|. ..+...-...+|+++|.+++.++.+.+. . .....+. .. .-...|+|+..--...
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~---~~---~~~~aDvViiavp~~~-- 78 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSA---AE---AVKGADLVILCVPVGA-- 78 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCH---HH---HhcCCCEEEECCCHHH--
Confidence 467778887 332 1121111124899999999887766542 1 1111111 11 1134798887653322
Q ss_pred CHHHHHHHHHhhccCCcEE
Q 022305 213 KPIEVFKEMCQVLKPGGLA 231 (299)
Q Consensus 213 d~~~~l~ei~rvLkpGG~l 231 (299)
...+++++...+++|..+
T Consensus 79 -~~~v~~~l~~~l~~~~iv 96 (307)
T PRK07502 79 -SGAVAAEIAPHLKPGAIV 96 (307)
T ss_pred -HHHHHHHHHhhCCCCCEE
Confidence 356677777788888744
No 374
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=25.07 E-value=31 Score=33.13 Aligned_cols=68 Identities=15% Similarity=0.067 Sum_probs=43.0
Q ss_pred CceeeccCc-CCc--cccCCCCCCCeEEEEeCCHHHHHhcCC----CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 139 SEVFPPSNT-PGV--SHFPPGYKQDRIVGMGMNEEELKRNPV----LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 139 ~~vLDiGcG-~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~----~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
.+||=+||| -|. .+........+|+..|-|.+..+++.. +++..+.|+.....+----+.+|+||+..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 478999997 332 222223234799999999888877644 48889999832222211123459999764
No 375
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=24.89 E-value=30 Score=26.36 Aligned_cols=11 Identities=9% Similarity=-0.091 Sum_probs=8.8
Q ss_pred ceeeccCcCCc
Q 022305 140 EVFPPSNTPGV 150 (299)
Q Consensus 140 ~vLDiGcG~G~ 150 (299)
.-+|||||.|.
T Consensus 5 gNIDIGcG~GN 15 (124)
T PF07101_consen 5 GNIDIGCGAGN 15 (124)
T ss_pred CccccccCCCc
Confidence 34799999885
No 376
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=24.64 E-value=1.6e+02 Score=27.04 Aligned_cols=88 Identities=11% Similarity=0.132 Sum_probs=46.8
Q ss_pred CCceeeccCcCCccccC---CCCCCCe-EEEEeCCHHHHHhcCCC-CcEEEeccCCC--CCC--CCCCCCee-EEEeccc
Q 022305 138 YSEVFPPSNTPGVSHFP---PGYKQDR-IVGMGMNEEELKRNPVL-TEYVVQDLNLN--PKL--PFEDNSFD-VITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~---~~~~~~~-v~gvD~S~~ml~~a~~~-~~~~~~D~~~~--~~l--pf~~~~FD-~Vis~~~ 207 (299)
..+||=.|+| +.+.+. ....+.+ |+++|.+++-++.+++. .+.+ .|.... +.+ ......+| +|+-...
T Consensus 161 g~~vlV~G~g-~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~-i~~~~~~~~~~~~~~~~~~~d~~v~d~~G 238 (347)
T PRK10309 161 GKNVIIIGAG-TIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQT-FNSREMSAPQIQSVLRELRFDQLILETAG 238 (347)
T ss_pred CCEEEEECCC-HHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceE-ecCcccCHHHHHHHhcCCCCCeEEEECCC
Confidence 3567777765 222222 1223454 78999999888776542 1111 111000 000 01223577 5553221
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEE
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
. ...+.+..+.|++||.+++
T Consensus 239 -----~-~~~~~~~~~~l~~~G~iv~ 258 (347)
T PRK10309 239 -----V-PQTVELAIEIAGPRAQLAL 258 (347)
T ss_pred -----C-HHHHHHHHHHhhcCCEEEE
Confidence 1 3577888999999997765
No 377
>PHA03412 putative methyltransferase; Provisional
Probab=24.28 E-value=97 Score=27.77 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=29.7
Q ss_pred HHHhhhcCCceeeccCcCCccccCCCCCC----CeEEEEeCCHHH
Q 022305 131 IAALTKYYSEVFPPSNTPGVSHFPPGYKQ----DRIVGMGMNEEE 171 (299)
Q Consensus 131 ~~~l~~~~~~vLDiGcG~G~~~~~~~~~~----~~v~gvD~S~~m 171 (299)
...+.+.-.-+++.|||--++.+...+.+ ++|+.+|..+.-
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (241)
T PHA03412 186 CKKFLDETGLEMNPGCGIDTGYYLEDWKGVKPLCEVVCMEFNEPE 230 (241)
T ss_pred HHHHHHhcCeeecCCCCccceeehhhccCCCccceEEEEeecCcC
Confidence 33444445678999999777777777654 689999987643
No 378
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=23.91 E-value=98 Score=29.67 Aligned_cols=19 Identities=5% Similarity=0.071 Sum_probs=16.1
Q ss_pred CCeEEEEeCCHHHHHhcCC
Q 022305 159 QDRIVGMGMNEEELKRNPV 177 (299)
Q Consensus 159 ~~~v~gvD~S~~ml~~a~~ 177 (299)
+.+|+|+|++++-++..++
T Consensus 22 G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 22 NHEVVALDILPSRVAMLND 40 (388)
T ss_pred CCcEEEEECCHHHHHHHHc
Confidence 6889999999999886554
No 379
>PRK06853 indolepyruvate oxidoreductase subunit beta; Reviewed
Probab=23.46 E-value=1.1e+02 Score=25.96 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=23.6
Q ss_pred CCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 196 DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 196 ~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
.++.|++++.+- .. +.+...-|||||.+++..
T Consensus 66 ~~~~D~lva~d~-------~~-~~~~~~~lk~gg~ii~n~ 97 (197)
T PRK06853 66 EGKADLLLAFEP-------LE-ALRYLPYLKKGGKVVVNT 97 (197)
T ss_pred CCCCCEEEEeCH-------HH-HHHHHHhcCCCcEEEEEC
Confidence 347999999863 22 345666789999999874
No 380
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=23.21 E-value=68 Score=29.89 Aligned_cols=88 Identities=14% Similarity=0.062 Sum_probs=54.7
Q ss_pred CceeeccCcCCccccCC--CCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 139 SEVFPPSNTPGVSHFPP--GYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~--~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
..|+|+=.|-|...++. ......|+++|.+|..++.-++. ...+.+| .+.+-+++..|-|....
T Consensus 196 eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd----~R~~~~~~~AdrVnLGL- 270 (351)
T KOG1227|consen 196 EVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGD----NRNPKPRLRADRVNLGL- 270 (351)
T ss_pred chhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcc----ccccCccccchheeecc-
Confidence 46788888888655532 22336899999999998855442 2334455 34444566677776443
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
+|.-++-.--...+|||.|.=++.
T Consensus 271 ---lPSse~~W~~A~k~Lk~eggsilH 294 (351)
T KOG1227|consen 271 ---LPSSEQGWPTAIKALKPEGGSILH 294 (351)
T ss_pred ---ccccccchHHHHHHhhhcCCcEEE
Confidence 444455555667789997753343
No 381
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=23.05 E-value=33 Score=27.59 Aligned_cols=87 Identities=13% Similarity=0.104 Sum_probs=42.8
Q ss_pred cCCceeeccCcCCc-cccCCCCCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCCC-CCCeeEEEecccccccCCH
Q 022305 137 YYSEVFPPSNTPGV-SHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFE-DNSFDVITNVVSVDYLTKP 214 (299)
Q Consensus 137 ~~~~vLDiGcG~G~-~~~~~~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf~-~~~FD~Vis~~~l~~~~d~ 214 (299)
.+.+++++|-|.-. -.......+..|+++|+++. .++..+.++..|+ .+-..+ -...|+|.|.. --+++
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~~g~~~v~DDi---f~P~l~iY~~a~lIYSiR---PP~El 83 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAPEGVNFVVDDI---FNPNLEIYEGADLIYSIR---PPPEL 83 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S-------STTEE---S---SS--HHHHTTEEEEEEES-----TTS
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccccCcceeeecc---cCCCHHHhcCCcEEEEeC---CChHH
Confidence 45699999987332 11111223579999999998 4556689999998 332111 13578888764 23455
Q ss_pred HHHHHHHHhhccCCcEEEEE
Q 022305 215 IEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 215 ~~~l~ei~rvLkpGG~lii~ 234 (299)
...+.++.+.+. .-++|.
T Consensus 84 ~~~il~lA~~v~--adlii~ 101 (127)
T PF03686_consen 84 QPPILELAKKVG--ADLIIR 101 (127)
T ss_dssp HHHHHHHHHHHT---EEEEE
T ss_pred hHHHHHHHHHhC--CCEEEE
Confidence 666666666543 556664
No 382
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=23.02 E-value=1.2e+02 Score=28.78 Aligned_cols=89 Identities=18% Similarity=0.119 Sum_probs=48.6
Q ss_pred CceeeccCcCCccccC----CCC-CC-CeEEEEeCCHHHHHhcCCCC---------cEEEeccCCCCCC-----C-CCCC
Q 022305 139 SEVFPPSNTPGVSHFP----PGY-KQ-DRIVGMGMNEEELKRNPVLT---------EYVVQDLNLNPKL-----P-FEDN 197 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~----~~~-~~-~~v~gvD~S~~ml~~a~~~~---------~~~~~D~~~~~~l-----p-f~~~ 197 (299)
.+||=+|++.+.+.+. ... .+ .+|+++|.+++-++.+++.. +....|......+ . ....
T Consensus 177 ~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g~ 256 (410)
T cd08238 177 GNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTGGQ 256 (410)
T ss_pred CEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhCCC
Confidence 4677776433332222 221 12 37999999999888876631 1122222100011 0 1224
Q ss_pred CeeEEEecccccccCCHHHHHHHHHhhccCCcEEEE
Q 022305 198 SFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 198 ~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
.||+|+.... ....+.+..+.|+++|.+++
T Consensus 257 g~D~vid~~g------~~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 257 GFDDVFVFVP------VPELVEEADTLLAPDGCLNF 286 (410)
T ss_pred CCCEEEEcCC------CHHHHHHHHHHhccCCeEEE
Confidence 6898876422 13577888999998886544
No 383
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=22.88 E-value=1.4e+02 Score=25.33 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=23.4
Q ss_pred CCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 196 DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 196 ~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
.+..|++++.+- ..+ .....-|||||.+++..
T Consensus 65 ~~~~D~lva~d~-------~~~-~~~~~~l~~gg~ii~ns 96 (197)
T PRK06274 65 EGQADLLLALEP-------AEV-ARNLHFLKKGGKIIVNA 96 (197)
T ss_pred CCCCCEEEEcCH-------HHH-HHHHhhcCCCcEEEEEC
Confidence 577999999853 232 34456799999999874
No 384
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=22.68 E-value=28 Score=34.09 Aligned_cols=38 Identities=11% Similarity=0.036 Sum_probs=28.0
Q ss_pred ceeeccCcCCc-cccCCCCCCCeEEEEeCCHHHHHhcCC
Q 022305 140 EVFPPSNTPGV-SHFPPGYKQDRIVGMGMNEEELKRNPV 177 (299)
Q Consensus 140 ~vLDiGcG~G~-~~~~~~~~~~~v~gvD~S~~ml~~a~~ 177 (299)
-+||+|.|+|. +..+.......|++++.=..|.+.|++
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~ark 107 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARK 107 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHH
Confidence 48999998886 333333334579999999999987765
No 385
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=22.04 E-value=34 Score=26.38 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=22.2
Q ss_pred CCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEE
Q 022305 195 EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 195 ~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
..+.||+|+-... .....++..+.++| |||.++.
T Consensus 16 ~~~~~D~ViD~~g----~~~~~~~~~~~~~l-~~G~~v~ 49 (127)
T PF13602_consen 16 GPGGVDVVIDTVG----QTGESLLDASRKLL-PGGRVVS 49 (127)
T ss_dssp TTS-EEEEEESS-----CCHHHCGGGCCCTE-EEEEEEE
T ss_pred CCCCceEEEECCC----CccHHHHHHHHHHC-CCCEEEE
Confidence 3578999997754 22344456778888 9998643
No 386
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=21.96 E-value=74 Score=31.02 Aligned_cols=83 Identities=12% Similarity=0.087 Sum_probs=48.2
Q ss_pred CCceeeccCc-CCc--cccCCCCCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCCCCCCeeEEEecccccccCCH
Q 022305 138 YSEVFPPSNT-PGV--SHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP 214 (299)
Q Consensus 138 ~~~vLDiGcG-~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~ 214 (299)
..+++=+|+| .|. ...... .+.+|+.+|+++.-...+... .+...++ +.. -...|+|+..- ..
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~-~Ga~ViV~d~dp~ra~~A~~~-G~~v~~l---~ea---l~~aDVVI~aT------G~ 277 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRG-LGARVIVTEVDPICALQAAMD-GFRVMTM---EEA---AELGDIFVTAT------GN 277 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-CCCEEEEEcCCchhhHHHHhc-CCEecCH---HHH---HhCCCEEEECC------CC
Confidence 3568888887 443 222222 367899999998665443321 1112222 111 13589998753 22
Q ss_pred HHHHH-HHHhhccCCcEEEEE
Q 022305 215 IEVFK-EMCQVLKPGGLAIVS 234 (299)
Q Consensus 215 ~~~l~-ei~rvLkpGG~lii~ 234 (299)
..++. +..+.+|+|+.++..
T Consensus 278 ~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 278 KDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred HHHHHHHHHhcCCCCCEEEEc
Confidence 33554 788899999977654
No 387
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=21.84 E-value=1.9e+02 Score=26.40 Aligned_cols=90 Identities=7% Similarity=-0.033 Sum_probs=49.2
Q ss_pred CceeeccCc-CCc---cccCCCCCCCeEEEEeCCHHHHHhcCC-C-CcEEE-ecc-C--CCCCCCCCCCCeeEEEecccc
Q 022305 139 SEVFPPSNT-PGV---SHFPPGYKQDRIVGMGMNEEELKRNPV-L-TEYVV-QDL-N--LNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 139 ~~vLDiGcG-~G~---~~~~~~~~~~~v~gvD~S~~ml~~a~~-~-~~~~~-~D~-~--~~~~lpf~~~~FD~Vis~~~l 208 (299)
.+|+=+|+| -|. ..+. ..+.+|+.++-+++.++.-++ . +.... ++. . .....+-+...||+|+...=-
T Consensus 3 m~I~IiGaGaiG~~~a~~L~--~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~ 80 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLA--RAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKA 80 (305)
T ss_pred ceEEEECCCHHHHHHHHHHH--hCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCH
Confidence 467888988 332 2222 236789999998765553322 1 21111 000 0 000011123579988755322
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEE
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
+ +...+++.+...+.++..++.
T Consensus 81 ~---~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 81 Y---DAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred H---hHHHHHHHHHhhCCCCCEEEE
Confidence 2 467888999999999886544
No 388
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.62 E-value=36 Score=31.54 Aligned_cols=62 Identities=10% Similarity=0.019 Sum_probs=38.9
Q ss_pred eeeccCcCCccccCCCCCCCe-EEEEeCCHHHHHhcCCC--CcEEEeccCCCCCCCCC-CCCeeEEEec
Q 022305 141 VFPPSNTPGVSHFPPGYKQDR-IVGMGMNEEELKRNPVL--TEYVVQDLNLNPKLPFE-DNSFDVITNV 205 (299)
Q Consensus 141 vLDiGcG~G~~~~~~~~~~~~-v~gvD~S~~ml~~a~~~--~~~~~~D~~~~~~lpf~-~~~FD~Vis~ 205 (299)
|+|+-||.|...+.....+.+ +.++|+++...+.-+.+ -..+.+|+ .++... -..+|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~~~~~~Di---~~~~~~~~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGNKVPFGDI---TKISPSDIPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCCCCCccCh---hhhhhhhCCCcCEEEec
Confidence 578888888644444444555 45799999988754433 14556787 444321 1248999854
No 389
>PLN02349 glycerol-3-phosphate acyltransferase
Probab=21.58 E-value=1e+02 Score=29.74 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=27.0
Q ss_pred EEecccccccCCHH-----------HHHHHHHhhccCCcEEEEEecC
Q 022305 202 ITNVVSVDYLTKPI-----------EVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 202 Vis~~~l~~~~d~~-----------~~l~ei~rvLkpGG~lii~~~~ 237 (299)
.+|.++=-|+.|++ +.|+++...|+.||.+|..+|.
T Consensus 256 LlCVySKKhm~d~Pelke~K~~~N~kslk~~~~lL~~Gg~~iwIaPs 302 (426)
T PLN02349 256 LICVHSKKHMNDDPELKEMKRKANTRTLKEMALLLREGGQLIWIAPS 302 (426)
T ss_pred eEEEEeccccCCChhhHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 45666667776432 6888999999999988876654
No 390
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=20.86 E-value=2e+02 Score=26.36 Aligned_cols=85 Identities=16% Similarity=0.193 Sum_probs=48.2
Q ss_pred CceeeccCcCCcccc----CCCCCCC-eEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCC-----CC-CCCCeeEEEecc
Q 022305 139 SEVFPPSNTPGVSHF----PPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL-----PF-EDNSFDVITNVV 206 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~----~~~~~~~-~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~l-----pf-~~~~FD~Vis~~ 206 (299)
.+||=.|+| +.+.. +.. .+. .++++|.+++-++.+++. .+.+ .+... ..+ .+ ....+|+|+...
T Consensus 168 ~~vlI~g~g-~iG~~~~~lak~-~G~~~v~~~~~~~~~~~~~~~~g~~~~-v~~~~-~~~~~~i~~~~~~~~~d~vld~~ 243 (351)
T cd08285 168 DTVAVFGIG-PVGLMAVAGARL-RGAGRIIAVGSRPNRVELAKEYGATDI-VDYKN-GDVVEQILKLTGGKGVDAVIIAG 243 (351)
T ss_pred CEEEEECCC-HHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHcCCceE-ecCCC-CCHHHHHHHHhCCCCCcEEEECC
Confidence 566666764 22222 222 344 699999998877776553 2111 12100 111 11 234689888543
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEE
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
. -...+.++.+.|+++|.++.
T Consensus 244 g------~~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 244 G------GQDTFEQALKVLKPGGTISN 264 (351)
T ss_pred C------CHHHHHHHHHHhhcCCEEEE
Confidence 2 13567899999999997763
No 391
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=20.75 E-value=1.9e+02 Score=30.48 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=18.8
Q ss_pred HHHHHHHHhhccCCcEEEEEecC
Q 022305 215 IEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 215 ~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
.++|+++..+|+++|.+++-+.+
T Consensus 568 ~~a~~~~rEll~ddg~lv~y~ah 590 (875)
T COG1743 568 REAFQAVRELLKDDGRLVTYYAH 590 (875)
T ss_pred HHHHHHHHHhcCCCCeEEEEEec
Confidence 37889999999999988776554
No 392
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=20.72 E-value=2.4e+02 Score=24.60 Aligned_cols=85 Identities=14% Similarity=0.177 Sum_probs=47.6
Q ss_pred CCceeeccCc-CCcc--ccCCCCCCCe-EEEEeCCHHHHHhcCCCC--cEEEeccCCCCCCCCCCCCeeEEEeccccccc
Q 022305 138 YSEVFPPSNT-PGVS--HFPPGYKQDR-IVGMGMNEEELKRNPVLT--EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 211 (299)
Q Consensus 138 ~~~vLDiGcG-~G~~--~~~~~~~~~~-v~gvD~S~~ml~~a~~~~--~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~ 211 (299)
..++|=.|+| .|.. .++.. .+.+ +++++.+++.++.+++.- +-+.... +.. ...+.+|+|+....-
T Consensus 98 g~~vlI~g~g~vg~~~i~~a~~-~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~---~~~-~~~~~~d~vl~~~~~--- 169 (277)
T cd08255 98 GERVAVVGLGLVGLLAAQLAKA-AGAREVVGVDPDAARRELAEALGPADPVAADT---ADE-IGGRGADVVIEASGS--- 169 (277)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-cCCCcEEEECCCHHHHHHHHHcCCCccccccc---hhh-hcCCCCCEEEEccCC---
Confidence 3566666765 1221 11222 3455 999999988887665431 1100000 111 123468988864221
Q ss_pred CCHHHHHHHHHhhccCCcEEEE
Q 022305 212 TKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 212 ~d~~~~l~ei~rvLkpGG~lii 233 (299)
...+.+..+.|+++|.++.
T Consensus 170 ---~~~~~~~~~~l~~~g~~~~ 188 (277)
T cd08255 170 ---PSALETALRLLRDRGRVVL 188 (277)
T ss_pred ---hHHHHHHHHHhcCCcEEEE
Confidence 2367888999999998764
No 393
>PRK08324 short chain dehydrogenase; Validated
Probab=20.57 E-value=82 Score=32.49 Aligned_cols=96 Identities=15% Similarity=0.186 Sum_probs=54.8
Q ss_pred CceeeccCcCCccccC---CCCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCC--CC-----CCCeeEE
Q 022305 139 SEVFPPSNTPGVSHFP---PGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLP--FE-----DNSFDVI 202 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~---~~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lp--f~-----~~~FD~V 202 (299)
+.+|=.|++.|.+... ....+.+|+.+|.++.-++...+ .+.++.+|+...+.+. +. -+.+|+|
T Consensus 423 k~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iDvv 502 (681)
T PRK08324 423 KVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVDIV 502 (681)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 4677778765553221 12246799999999876653322 4567788873211111 11 2368999
Q ss_pred EecccccccCC-------------------HHHHHHHHHhhccC---CcEEEEE
Q 022305 203 TNVVSVDYLTK-------------------PIEVFKEMCQVLKP---GGLAIVS 234 (299)
Q Consensus 203 is~~~l~~~~d-------------------~~~~l~ei~rvLkp---GG~lii~ 234 (299)
+.+........ ...+++.+.+.+++ ||.+++.
T Consensus 503 I~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~v 556 (681)
T PRK08324 503 VSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFI 556 (681)
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 97765432210 23456667777776 6766654
No 394
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=20.31 E-value=60 Score=29.17 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=38.2
Q ss_pred HHHhhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC
Q 022305 131 IAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL 178 (299)
Q Consensus 131 ~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~ 178 (299)
+.........|||.=+|+|+........+...+|+|++++..+.+.++
T Consensus 216 i~~~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r 263 (302)
T COG0863 216 IRDYSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKR 263 (302)
T ss_pred HHhcCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHH
Confidence 333445567899999999997777777788999999999998876653
No 395
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=20.00 E-value=59 Score=29.50 Aligned_cols=92 Identities=16% Similarity=0.089 Sum_probs=47.6
Q ss_pred CceeeccCc-CCcc-ccCCCCCCCeEEEEeCCHHHHHhcCCCCcE---------EEec------------cCCCCCCCCC
Q 022305 139 SEVFPPSNT-PGVS-HFPPGYKQDRIVGMGMNEEELKRNPVLTEY---------VVQD------------LNLNPKLPFE 195 (299)
Q Consensus 139 ~~vLDiGcG-~G~~-~~~~~~~~~~v~gvD~S~~ml~~a~~~~~~---------~~~D------------~~~~~~lpf~ 195 (299)
.+|.=+|+| -|.+ .......+.+|+.+|.+++.++.+.+.++- ..+. +.....+. .
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE-S 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH-H
Confidence 466777887 3321 111222467899999999988754321000 0000 00000111 1
Q ss_pred CCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEE
Q 022305 196 DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAI 232 (299)
Q Consensus 196 ~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~li 232 (299)
-...|+|+-.- .+.......+++++.+.++|+..++
T Consensus 83 ~~~aDlVieav-~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 83 LSDADFIVEAV-PEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred hCCCCEEEEcC-cCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 13367777652 2222234678888988888876543
Done!