BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022306
(299 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A3MWX6|SRP54_PYRCJ Signal recognition particle 54 kDa protein OS=Pyrobaculum
calidifontis (strain JCM 11548 / VA1) GN=srp54 PE=3 SV=1
Length = 431
Score = 38.5 bits (88), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 65/125 (52%), Gaps = 12/125 (9%)
Query: 78 KNANSNQDSDSFSIFSSRALVSEK-EIEELVALREQVEDLQRKMFEKDELLKSLESSKSQ 136
K +D D F +F+ R V+ + +L AL E++ + +FE+D++L+ LES +
Sbjct: 266 KFIGVGEDVDEFELFNPRKFVARVLGMGDLDALVEKI----KAVFEEDKVLEELESGRLD 321
Query: 137 VNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKS---QWEAMTVSRKA 193
+ ++D L +L L K QL S+ IK++++Q L + +W+A+ S
Sbjct: 322 LLTFKKQIDSLLKLG----PLSKVFQLLPSNFAIKVSEEQIELSQKNLRKWKAILSSMTM 377
Query: 194 EKLQE 198
E+L+
Sbjct: 378 EELKH 382
>sp|P13538|MYSS_CHICK Myosin heavy chain, skeletal muscle, adult OS=Gallus gallus PE=1 SV=4
Length = 1939
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 123 KDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKS 182
++E L+ + + +N + ++L R+AAE +++TQ L D +I L D E
Sbjct: 1611 RNEALRLKKKMEGDLNEMEIQLSHANRMAAEAQKNLRNTQGTLKDTQIHLDDALRTQEDL 1670
Query: 183 QWEAMTVSRKAEKLQEEVESMQGEM 207
+ + V R+A LQ EVE ++G +
Sbjct: 1671 KEQVAMVERRANLLQAEVEELRGAL 1695
>sp|Q9VJE5|CL190_DROME Restin homolog OS=Drosophila melanogaster GN=CLIP-190 PE=1 SV=1
Length = 1690
Score = 35.0 bits (79), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 68/125 (54%), Gaps = 19/125 (15%)
Query: 104 EELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQL 163
E+L +++ +++LQ + +K+EL+++LE E S+I++
Sbjct: 1217 EKLTEIQQSLQELQDSVKQKEELVQNLEEK-----------------VRESSSIIEAQNT 1259
Query: 164 QLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKNDST 223
+L+++ ++L +K + L+++Q + + +K ++LQEE + GE+ +Q G IK DS
Sbjct: 1260 KLNESNVQLENKTSCLKETQDQLLESQKKEKQLQEEAAKLSGELQQ-VQEANGDIK-DSL 1317
Query: 224 VNADD 228
V ++
Sbjct: 1318 VKVEE 1322
>sp|P13541|MYH3_MOUSE Myosin-3 OS=Mus musculus GN=Myh3 PE=2 SV=2
Length = 1940
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 137 VNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKL 196
+N + ++L R AAE ++S Q QL D ++ L D E + + V R+A L
Sbjct: 1623 LNEIEIQLSHANRQAAETIKHLRSVQGQLKDTQLHLDDALRGQEDLKEQLAIVERRANLL 1682
Query: 197 QEEVESMQGEM 207
Q EVE ++ +
Sbjct: 1683 QAEVEELRATL 1693
>sp|P12847|MYH3_RAT Myosin-3 OS=Rattus norvegicus GN=Myh3 PE=2 SV=1
Length = 1940
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 137 VNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKL 196
+N + ++L R AAE ++S Q QL D ++ L D E + + V R+A L
Sbjct: 1623 LNEIEIQLSHANRQAAETIKHLRSVQGQLKDTQLHLDDALRGQEDLKEQLAIVERRANLL 1682
Query: 197 QEEVESMQGEM 207
Q EVE ++ +
Sbjct: 1683 QAEVEELRATL 1693
>sp|P11055|MYH3_HUMAN Myosin-3 OS=Homo sapiens GN=MYH3 PE=1 SV=3
Length = 1940
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 137 VNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKL 196
+N + ++L R AAE ++S Q QL D ++ L D E + + V R+A L
Sbjct: 1623 LNEIEIQLSHANRQAAETLKHLRSVQGQLKDTQLHLDDALRGQEDLKEQLAIVERRANLL 1682
Query: 197 QEEVESMQGEM 207
Q EVE ++ +
Sbjct: 1683 QAEVEELRATL 1693
>sp|Q4I7N9|BRE1_GIBZE E3 ubiquitin-protein ligase BRE1 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=BRE1 PE=3
SV=1
Length = 703
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 67/120 (55%), Gaps = 8/120 (6%)
Query: 101 KEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKS 160
+E+E + LR+Q DL R +DELL K++++ ++++K LA+ K+ I +
Sbjct: 355 QELESEIILRDQ--DLARVRSARDELLAETTQHKARLDQERASVEQVKALASAKEDRITA 412
Query: 161 TQLQLSDAKIKLADKQAALEKSQWEAMTVSR---KAEKLQEEVESMQGEMSSFMQIFEGL 217
+ QLS +++ ++ Q A+ EA+TV K KLQ++ +S+ E+ + + ++ +
Sbjct: 413 LESQLS--RLQQSETQQAV-SPDIEALTVEELRLKYTKLQQDFDSINMELPAIEKAYKKM 469
>sp|Q7Z7B0|FLIP1_HUMAN Filamin-A-interacting protein 1 OS=Homo sapiens GN=FILIP1 PE=2 SV=1
Length = 1213
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 109 LREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDA 168
LR +VE LQ++M E ++L ++ SKS+ +HL L++ K L KD L +L++ +
Sbjct: 421 LRLEVEKLQKRMSELEKLEEAFSKSKSECTQLHLNLEKEKNLT--KDLL---NELEVVKS 475
Query: 169 KIK-LADKQAALEKSQW 184
++K L ++ LEK++
Sbjct: 476 RVKELECSESRLEKAEL 492
>sp|Q9BE40|MYH1_BOVIN Myosin-1 OS=Bos taurus GN=MYH1 PE=2 SV=2
Length = 1938
Score = 32.0 bits (71), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 137 VNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKL 196
+N + ++L+ R+AAE +STQ L D +I L D E + + V R+A L
Sbjct: 1625 LNEMEIQLNHANRMAAEALKNYRSTQAILKDTQIHLDDALRGQEDLKEQLAMVERRANLL 1684
Query: 197 QEEVESMQGEM 207
Q E+E ++ +
Sbjct: 1685 QAEIEELRATL 1695
>sp|Q8K4T4|FLIP1_RAT Filamin-A-interacting protein 1 OS=Rattus norvegicus GN=Filip1 PE=1
SV=1
Length = 1212
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 109 LREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDA 168
LR +VE LQ++M E ++L ++ SKS+ +HL L++ K L KD L +L++ +
Sbjct: 420 LRLEVEKLQKRMSELEKLEEAFSRSKSECTQLHLNLEKEKNLT--KDLL---NELEVVKS 474
Query: 169 KIK-LADKQAALEKSQW 184
++K L ++ LEK++
Sbjct: 475 RVKELECSESRLEKAEL 491
>sp|Q14203|DCTN1_HUMAN Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=1 SV=3
Length = 1278
Score = 32.0 bits (71), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 122/312 (39%), Gaps = 53/312 (16%)
Query: 17 SSPSLYDRKASSSFTRRGSMIYTKT-------PSRESLLKKTTD--PKGR--------NA 59
+SP D AS R G+ KT P + +KTT PK A
Sbjct: 104 TSPETPDSSASKVLKREGTDTTAKTSKLRGLKPKKAPTARKTTTRRPKPTRPASTGVAGA 163
Query: 60 AQSLPPKRKKDNGDKDLGKNANSNQDSDSFSIFSSRALVSEKEIEELV-------ALREQ 112
+ SL P G+ + + Q + I + L S + L LR Q
Sbjct: 164 SSSLGPSGSASAGELSSSEPSTPAQTPLAAPIIPTPVLTSPGAVPPLPSPSKEEEGLRAQ 223
Query: 113 VEDLQRKM-------FEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQL 165
V DL+ K+ E LK LE K Q+ V +++ A+ +K + +
Sbjct: 224 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283
Query: 166 SDA-------KIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQ---GEMSSFMQIFE 215
+A ++AD A+E + + +AE LQ+EVE+++ E+++ ++I +
Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343
Query: 216 GLIKNDSTVNADDDYDIKPY------YSDYLSDIDDL------DDVEMQRMEEAREAYIT 263
I+ + A Y +K D L + DL + V++Q++ E + +
Sbjct: 344 AEIEEKGSDGAASSYQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELE 403
Query: 264 AVAMAKEKQDEE 275
V +E+ EE
Sbjct: 404 VVRQQRERLQEE 415
>sp|P02565|MYH3_CHICK Myosin-3 OS=Gallus gallus GN=MYH3 PE=2 SV=3
Length = 1940
Score = 32.0 bits (71), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%)
Query: 123 KDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKS 182
++E L+ + + +N + ++L R AAE +++TQ L D +I L D + E
Sbjct: 1613 RNEALRLKKKMEGDLNEIEIQLSHANRQAAEAQKNLRNTQGVLKDTQIHLDDALRSQEDL 1672
Query: 183 QWEAMTVSRKAEKLQEEVESMQGEM 207
+ + V R+A LQ E+E ++ +
Sbjct: 1673 KEQVAMVERRANLLQAEIEELRAAL 1697
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.121 0.308
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,275,864
Number of Sequences: 539616
Number of extensions: 3738723
Number of successful extensions: 24046
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 1578
Number of HSP's that attempted gapping in prelim test: 20747
Number of HSP's gapped (non-prelim): 4344
length of query: 299
length of database: 191,569,459
effective HSP length: 117
effective length of query: 182
effective length of database: 128,434,387
effective search space: 23375058434
effective search space used: 23375058434
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)